Query 015469
Match_columns 406
No_of_seqs 335 out of 2938
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 13:10:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015469.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015469hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fc6_A Photosystem II D1 prote 100.0 3E-64 1E-68 495.4 45.4 364 18-385 2-374 (388)
2 1k32_A Tricorn protease; prote 100.0 2.6E-50 8.8E-55 443.5 26.5 345 15-390 654-1027(1045)
3 3k50_A Putative S41 protease; 100.0 2.9E-47 9.8E-52 372.7 25.1 342 26-399 17-395 (403)
4 3dor_A Protein CT_858, CPAF; m 100.0 1E-35 3.5E-40 295.6 33.1 348 21-390 7-556 (583)
5 1j7x_A IRBP, interphotorecepto 100.0 6.9E-34 2.3E-38 269.8 28.9 274 22-390 5-293 (302)
6 2kom_A Partitioning defective 99.4 3.3E-13 1.1E-17 109.9 9.0 105 74-178 14-120 (121)
7 2koj_A Partitioning defective 99.4 9.5E-13 3.3E-17 105.4 9.1 100 80-179 1-102 (111)
8 2r4h_A Membrane-associated gua 99.2 2.6E-11 8.8E-16 97.2 9.0 101 73-179 9-110 (112)
9 2byg_A Channel associated prot 99.2 2.7E-11 9.2E-16 97.8 8.4 101 76-179 12-115 (117)
10 2edz_A PDZ domain-containing p 99.2 1.2E-12 4E-17 105.5 0.1 96 69-181 5-100 (114)
11 4fgm_A Aminopeptidase N family 99.2 2.2E-11 7.4E-16 124.9 8.2 165 12-189 388-565 (597)
12 2vz5_A TAX1-binding protein 3; 99.2 1E-10 3.6E-15 97.3 10.7 70 117-186 63-132 (139)
13 2jre_A C60-1 PDZ domain peptid 99.2 4.1E-11 1.4E-15 95.3 7.2 100 79-180 2-106 (108)
14 1qau_A Neuronal nitric oxide s 99.2 2.1E-10 7.3E-15 91.7 10.6 86 99-188 11-97 (112)
15 2jxo_A Ezrin-radixin-moesin-bi 99.1 3.7E-11 1.3E-15 93.8 5.8 92 78-179 3-94 (98)
16 2dm8_A INAD-like protein; PDZ 99.1 3.1E-11 1.1E-15 97.3 5.5 99 77-180 6-105 (116)
17 1wfv_A Membrane associated gua 99.1 1.7E-11 5.9E-16 96.6 3.5 95 81-179 2-97 (103)
18 2pkt_A PDZ and LIM domain prot 99.1 1.2E-10 4E-15 89.6 7.3 76 102-181 14-89 (91)
19 2v90_A PDZ domain-containing p 99.1 7.9E-11 2.7E-15 91.5 6.3 79 101-181 14-92 (96)
20 3b76_A E3 ubiquitin-protein li 99.1 1.7E-10 5.7E-15 93.2 8.4 100 76-177 12-112 (118)
21 1x5q_A LAP4 protein; PDZ domai 99.1 2E-10 6.8E-15 91.6 8.6 83 98-181 23-108 (110)
22 1wg6_A Hypothetical protein (r 99.1 3.3E-11 1.1E-15 98.8 3.9 103 77-179 10-123 (127)
23 2he4_A Na(+)/H(+) exchange reg 99.1 4.5E-10 1.5E-14 86.1 10.1 74 101-179 15-88 (90)
24 2w4f_A Protein LAP4; structura 99.1 1.8E-10 6.1E-15 89.6 7.8 80 100-180 13-95 (97)
25 2yuy_A RHO GTPase activating p 99.1 2.3E-11 8E-16 99.6 2.3 95 78-179 26-121 (126)
26 2pa1_A PDZ and LIM domain prot 99.1 4E-10 1.4E-14 85.8 8.8 74 102-179 13-86 (87)
27 2vsp_A PDZ domain-containing p 99.1 1.3E-10 4.4E-15 89.4 5.5 74 102-180 15-88 (91)
28 1g9o_A NHE-RF; PDZ domain, com 99.1 5.6E-10 1.9E-14 85.7 8.9 75 101-179 14-88 (91)
29 2eaq_A LIM domain only protein 99.1 1.9E-10 6.6E-15 88.1 6.2 72 101-178 17-89 (90)
30 3l4f_D SH3 and multiple ankyri 99.1 6.1E-10 2.1E-14 91.8 9.6 100 75-178 16-124 (132)
31 2iwq_A Multiple PDZ domain pro 99.1 3.7E-10 1.3E-14 91.9 8.1 99 75-178 14-119 (123)
32 1n7e_A AMPA receptor interacti 99.1 4.7E-10 1.6E-14 87.3 8.4 75 102-180 17-92 (97)
33 2uzc_A Human pdlim5, PDZ and L 99.0 6.9E-10 2.4E-14 84.6 8.7 74 102-179 14-87 (88)
34 1v6b_A Harmonin isoform A1; st 99.0 2.9E-10 9.9E-15 91.9 6.9 98 77-177 3-106 (118)
35 3sfj_A TAX1-binding protein 3; 99.0 1.1E-09 3.9E-14 86.2 10.1 60 117-176 44-103 (104)
36 2awx_A Synapse associated prot 99.0 6.7E-10 2.3E-14 87.7 8.7 86 101-187 14-102 (105)
37 2opg_A Multiple PDZ domain pro 99.0 8.5E-10 2.9E-14 85.9 9.2 78 101-181 15-93 (98)
38 3i18_A LMO2051 protein; alpha- 99.0 1.1E-09 3.9E-14 85.6 9.8 70 117-189 6-76 (100)
39 1uep_A Membrane associated gua 99.0 1.5E-10 5E-15 91.3 4.7 78 99-179 18-97 (103)
40 2djt_A Unnamed protein product 99.0 3E-10 1E-14 89.6 6.5 79 99-179 20-99 (104)
41 2db5_A INAD-like protein; PDZ 99.0 3.6E-10 1.2E-14 92.7 7.1 78 101-179 37-116 (128)
42 2qkv_A Inactivation-NO-after-p 99.0 5.5E-10 1.9E-14 86.7 7.8 72 99-177 18-90 (96)
43 1d5g_A Human phosphatase HPTP1 99.0 1.1E-09 3.8E-14 84.9 9.4 78 101-179 16-94 (96)
44 2l97_A HTRA, putative serine p 99.0 8.3E-10 2.8E-14 91.3 9.1 70 117-189 56-126 (134)
45 2q3g_A PDZ and LIM domain prot 99.0 6.3E-10 2.2E-14 85.0 7.7 75 101-179 13-87 (89)
46 2iwo_A Multiple PDZ domain pro 99.0 1.2E-10 4.1E-15 94.4 3.8 80 101-181 36-116 (120)
47 1wh1_A KIAA1095 protein; PDZ d 99.0 7.8E-10 2.7E-14 90.1 8.5 82 97-181 28-110 (124)
48 2jil_A GRIP1 protein, glutamat 99.0 5.5E-10 1.9E-14 86.8 7.1 79 101-180 14-94 (97)
49 1ihj_A INAD; intermolecular di 99.0 6.8E-10 2.3E-14 86.5 7.6 78 101-179 17-98 (98)
50 1kwa_A Hcask/LIN-2 protein; PD 99.0 5.7E-10 2E-14 85.2 7.0 73 101-179 13-86 (88)
51 2kjp_A Uncharacterized protein 99.0 1.3E-10 4.3E-15 89.4 3.2 69 119-190 2-71 (91)
52 1r6j_A Syntenin 1; PDZ, membra 99.0 6.4E-10 2.2E-14 83.3 6.9 65 101-176 16-80 (82)
53 2dls_A PDZ-rhogef, RHO guanine 99.0 1.4E-09 4.8E-14 83.9 8.9 70 101-179 19-88 (93)
54 2f5y_A Regulator of G-protein 99.0 1.3E-09 4.3E-14 83.7 8.6 71 101-179 14-84 (91)
55 3bpu_A Membrane-associated gua 99.0 1E-09 3.6E-14 83.6 8.0 73 101-179 14-87 (88)
56 2dmz_A INAD-like protein; PDZ 99.0 3.9E-10 1.3E-14 92.6 5.9 80 100-180 26-108 (129)
57 4amh_A Disks large homolog 1; 99.0 3.7E-09 1.3E-13 83.6 11.2 62 117-179 31-93 (106)
58 2iwn_A Multiple PDZ domain pro 99.0 7.7E-10 2.6E-14 85.9 7.1 80 99-179 13-94 (97)
59 2vwr_A Ligand of NUMB protein 99.0 1.5E-09 5.1E-14 84.0 8.5 74 101-179 16-90 (95)
60 2kl1_A YLBL protein; structure 99.0 8.8E-10 3E-14 85.2 7.1 70 117-189 4-74 (94)
61 2i04_A Membrane-associated gua 99.0 2.1E-09 7.1E-14 81.3 9.1 73 101-176 11-85 (85)
62 1b8q_A Protein (neuronal nitri 99.0 2.4E-10 8.3E-15 93.6 4.1 86 98-187 17-103 (127)
63 2vsv_A Rhophilin-2; scaffold p 99.0 1.7E-09 5.7E-14 85.9 8.8 71 101-178 34-104 (109)
64 1um1_A KIAA1849 protein, RSGI 99.0 3E-10 1E-14 90.5 4.6 81 101-182 19-100 (110)
65 3cyy_A Tight junction protein 99.0 1.4E-09 4.7E-14 83.6 8.1 66 119-185 24-90 (92)
66 1i16_A Interleukin 16, LCF; cy 99.0 3.4E-10 1.2E-14 93.1 4.9 79 100-178 39-118 (130)
67 1uez_A KIAA1526 protein; PDZ d 99.0 1E-09 3.4E-14 86.1 7.4 76 99-179 19-94 (101)
68 3ngh_A PDZ domain-containing p 99.0 4.4E-10 1.5E-14 89.0 5.3 62 117-179 25-86 (106)
69 1wi4_A Synip, syntaxin binding 99.0 1.6E-09 5.5E-14 86.2 8.4 78 101-179 25-106 (109)
70 3axa_A Afadin, nectin-3, prote 99.0 1.6E-09 5.4E-14 85.7 8.1 79 101-180 21-100 (106)
71 1m5z_A GRIP, AMPA receptor int 99.0 3E-09 1E-13 81.6 9.3 71 102-177 20-90 (91)
72 3r68_A Na(+)/H(+) exchange reg 99.0 1.7E-09 5.7E-14 83.7 7.8 73 101-178 16-88 (95)
73 1rgw_A ZAsp protein; PDZ, cyph 99.0 2.1E-09 7.3E-14 81.3 8.2 73 102-178 12-84 (85)
74 1whd_A RGS3, regulator of G-pr 98.9 2.7E-10 9.1E-15 89.3 3.1 74 98-179 23-96 (100)
75 3qik_A Phosphatidylinositol 3, 98.9 1.2E-09 4.1E-14 84.4 6.6 69 101-175 28-98 (101)
76 2zpm_A Regulator of sigma E pr 98.9 9.4E-10 3.2E-14 84.4 6.0 67 119-187 5-71 (91)
77 2i6v_A General secretion pathw 98.9 1.6E-09 5.4E-14 82.5 7.2 66 119-186 20-86 (87)
78 1w9e_A Syntenin 1; cell adhesi 98.9 2.6E-09 8.9E-14 91.6 9.5 82 100-187 15-96 (166)
79 2jik_A Synaptojanin-2 binding 98.9 2.6E-09 9E-14 83.6 8.7 78 101-179 18-98 (101)
80 2fne_A Multiple PDZ domain pro 98.9 1.5E-09 5.1E-14 87.5 7.3 79 101-180 36-115 (117)
81 3tsv_A Tight junction protein 98.9 1.8E-09 6.1E-14 88.0 7.8 74 101-179 39-113 (124)
82 1ujv_A Membrane associated gua 98.9 2E-09 6.8E-14 83.5 7.7 74 98-179 18-92 (96)
83 1wif_A RSGI RUH-020, riken cDN 98.9 9.2E-10 3.1E-14 89.6 6.0 74 98-177 35-110 (126)
84 2ejy_A 55 kDa erythrocyte memb 98.9 1.6E-09 5.4E-14 84.1 7.0 71 101-177 24-95 (97)
85 2d90_A PDZ domain containing p 98.9 1.2E-09 4E-14 85.9 6.4 74 101-179 17-90 (102)
86 2fe5_A Presynaptic protein SAP 98.9 2.9E-09 9.8E-14 82.2 8.5 76 102-178 15-93 (94)
87 3id1_A Regulator of sigma E pr 98.9 1.9E-09 6.3E-14 83.5 7.4 69 120-190 4-75 (95)
88 2pzd_A Serine protease HTRA2; 98.9 3.7E-09 1.3E-13 84.6 9.1 69 117-189 34-102 (113)
89 2g5m_B Neurabin-2; spinophilin 98.9 4.6E-10 1.6E-14 89.9 3.7 81 101-182 15-99 (113)
90 1va8_A Maguk P55 subfamily mem 98.9 2.1E-09 7.1E-14 86.1 7.5 72 102-180 38-110 (113)
91 2kjd_A Sodium/hydrogen exchang 98.9 2.7E-10 9.3E-15 93.4 2.3 85 100-188 19-105 (128)
92 2kpk_A Membrane-associated gua 98.9 2.8E-09 9.7E-14 87.4 8.5 74 102-178 30-105 (129)
93 1ujd_A KIAA0559 protein; PDZ d 98.9 2.6E-09 8.9E-14 86.1 7.8 79 101-180 30-111 (117)
94 2o2t_A Multiple PDZ domain pro 98.9 3.8E-10 1.3E-14 91.0 2.8 63 118-181 49-113 (117)
95 2qg1_A Multiple PDZ domain pro 98.9 3.4E-09 1.2E-13 81.4 8.1 73 101-178 16-89 (92)
96 2i1n_A Discs, large homolog 3; 98.9 1.7E-09 5.8E-14 84.9 6.4 79 101-180 15-96 (102)
97 3cbz_A Dishevelled-2; PDZ doma 98.9 4E-09 1.4E-13 83.7 8.4 78 101-179 17-97 (108)
98 2eeh_A PDZ domain-containing p 98.9 3.9E-09 1.3E-13 82.5 8.2 73 102-179 23-95 (100)
99 2yub_A LIMK-2, LIM domain kina 98.9 1.3E-09 4.4E-14 88.0 5.5 78 102-182 30-109 (118)
100 1vb7_A PDZ and LIM domain 2; P 98.9 1.3E-09 4.5E-14 84.2 5.4 62 118-180 30-91 (94)
101 2eeg_A PDZ and LIM domain prot 98.9 2.7E-09 9.3E-14 82.4 7.0 74 102-179 19-92 (94)
102 1ueq_A Membrane associated gua 98.9 5.6E-09 1.9E-13 84.9 9.2 76 100-178 29-106 (123)
103 3o46_A Maguk P55 subfamily mem 98.9 4.6E-09 1.6E-13 80.9 8.2 72 102-178 16-88 (93)
104 1wf7_A Enigma homologue protei 98.9 7.2E-10 2.5E-14 87.2 3.5 66 119-185 30-95 (103)
105 2yt7_A Amyloid beta A4 precurs 98.9 4.9E-09 1.7E-13 82.1 8.3 76 101-177 21-98 (101)
106 2p3w_A Probable serine proteas 98.9 6.3E-09 2.2E-13 83.1 8.9 68 117-188 34-101 (112)
107 1uit_A Human discs large 5 pro 98.9 4.2E-09 1.4E-13 84.8 7.9 75 101-181 30-104 (117)
108 3r0h_A INAD, inactivation-NO-a 98.9 1.1E-08 3.8E-13 90.7 11.4 103 76-181 6-111 (206)
109 3suz_A Amyloid beta A4 precurs 98.9 1.5E-09 5.2E-14 105.9 6.2 151 18-185 148-301 (388)
110 2kv8_A RGS12, regulator of G-p 98.9 1.7E-09 5.8E-14 81.5 5.1 69 101-177 13-81 (83)
111 2d92_A INAD-like protein; PDZ 98.9 3.1E-09 1.1E-13 84.4 6.9 77 101-177 26-104 (108)
112 1wha_A KIAA0147 protein, scrib 98.9 4.6E-09 1.6E-13 82.9 7.8 77 101-178 18-98 (105)
113 1wi2_A Riken cDNA 2700099C19; 98.9 4.8E-09 1.6E-13 82.6 7.8 74 101-179 27-100 (104)
114 3khf_A Microtubule-associated 98.9 3.7E-09 1.3E-13 82.4 7.1 60 119-179 35-94 (99)
115 1q3o_A Shank1; PDZ, GKAP, pept 98.9 6.4E-09 2.2E-13 82.6 8.6 57 119-176 46-102 (109)
116 2edp_A Fragment, shroom family 98.9 2.2E-09 7.5E-14 84.0 5.8 73 102-179 22-95 (100)
117 1v5q_A GRIP1 homolog, glutamat 98.9 3.7E-09 1.3E-13 85.9 7.3 81 99-179 25-108 (122)
118 1wfg_A Regulating synaptic mem 98.9 4.3E-09 1.5E-13 86.6 7.4 61 119-179 66-128 (131)
119 3i4w_A Disks large homolog 4; 98.9 9.5E-09 3.3E-13 80.8 8.9 73 101-178 22-95 (104)
120 2q9v_A Membrane-associated gua 98.8 5.5E-09 1.9E-13 79.9 7.3 74 101-177 13-88 (90)
121 1uew_A Membrane associated gua 98.8 5.5E-09 1.9E-13 83.7 7.5 79 101-180 22-105 (114)
122 2e7k_A Maguk P55 subfamily mem 98.8 7.4E-09 2.5E-13 79.4 7.9 69 101-177 18-87 (91)
123 2i4s_A General secretion pathw 98.8 6.9E-09 2.4E-13 81.9 7.9 66 119-186 38-104 (105)
124 1q7x_A PDZ2B domain of PTP-BAS 98.8 3.5E-09 1.2E-13 84.0 6.3 79 101-180 20-104 (108)
125 1y7n_A Amyloid beta A4 precurs 98.8 5.5E-09 1.9E-13 79.9 7.1 56 121-177 34-89 (90)
126 1uf1_A KIAA1526 protein; PDZ d 98.8 4.1E-09 1.4E-13 86.4 6.7 81 102-187 33-113 (128)
127 2dlu_A INAD-like protein; PDZ 98.8 4.6E-09 1.6E-13 83.8 6.8 73 101-179 26-99 (111)
128 1wf8_A Neurabin-I; PDZ domain, 98.8 4.1E-09 1.4E-13 83.5 6.4 77 101-178 20-100 (107)
129 1qav_A Alpha-1 syntrophin (res 98.8 9.8E-09 3.3E-13 78.5 8.3 72 101-176 16-88 (90)
130 1x6d_A Interleukin-16; PDZ dom 98.8 2.5E-09 8.5E-14 86.5 5.0 80 100-181 26-106 (119)
131 3egg_C Spinophilin; PP1, serin 98.8 7.1E-09 2.4E-13 89.1 8.1 76 101-177 91-170 (170)
132 2la8_A Inactivation-NO-after-p 98.8 6.9E-09 2.4E-13 82.0 7.4 70 101-177 14-84 (106)
133 1v5l_A PDZ and LIM domain 3; a 98.8 3.1E-09 1.1E-13 83.5 5.4 61 119-180 30-90 (103)
134 2h2b_A Tight junction protein 98.8 1.2E-08 3.9E-13 80.8 8.7 77 101-179 19-98 (107)
135 2fcf_A Multiple PDZ domain pro 98.8 8.3E-09 2.8E-13 81.0 7.7 61 118-179 39-100 (103)
136 1nf3_C PAR-6B; semi-CRIB motif 98.8 7.5E-09 2.6E-13 84.8 7.6 61 118-179 65-126 (128)
137 3kzd_A TIAM-1, T-lymphoma inva 98.8 1.5E-08 5E-13 77.8 8.5 70 101-175 20-89 (94)
138 1v62_A KIAA1719 protein; struc 98.8 7E-09 2.4E-13 83.5 7.0 76 101-179 27-103 (117)
139 2dkr_A LIN-7 homolog B; LIN-7B 98.8 8E-09 2.7E-13 79.5 7.0 74 101-178 16-90 (93)
140 2rcz_A Tight junction protein 98.8 1.2E-08 4E-13 76.2 7.7 59 119-178 22-81 (81)
141 3qe1_A Sorting nexin-27, G pro 98.8 1.2E-08 4.3E-13 80.6 8.1 59 120-179 45-103 (107)
142 2eno_A Synaptojanin-2-binding 98.8 9.4E-09 3.2E-13 83.2 7.1 78 101-179 28-108 (120)
143 2ego_A General receptor for ph 98.8 1.2E-08 4.1E-13 79.1 7.4 59 118-177 37-95 (96)
144 2csj_A TJP2 protein; PDZ domai 98.8 3.6E-09 1.2E-13 85.3 4.1 98 80-179 4-105 (117)
145 1mfg_A ERB-B2 interacting prot 98.8 1.9E-08 6.5E-13 77.7 8.0 60 117-178 34-93 (95)
146 3soe_A Membrane-associated gua 98.8 3.3E-08 1.1E-12 78.5 9.4 73 101-181 23-96 (113)
147 1tp5_A Presynaptic density pro 98.8 1.9E-08 6.6E-13 81.1 8.1 73 101-178 25-98 (119)
148 2z17_A Pleckstrin homology SEC 98.8 8.5E-09 2.9E-13 81.2 5.8 91 78-174 9-103 (104)
149 1uhp_A Hypothetical protein KI 98.8 2.3E-08 7.8E-13 79.1 8.3 77 101-178 19-101 (107)
150 3k1r_A Harmonin; protein-prote 98.8 2.1E-08 7.2E-13 88.1 8.8 74 101-179 96-169 (192)
151 1y8t_A Hypothetical protein RV 98.8 3.3E-08 1.1E-12 94.2 10.8 84 100-189 228-313 (324)
152 3e17_A Tight junction protein 98.8 1.3E-08 4.6E-13 77.5 6.5 57 119-176 22-79 (88)
153 4e34_A Golgi-associated PDZ an 98.7 2.6E-08 8.7E-13 75.6 7.6 71 101-175 14-85 (87)
154 2eei_A PDZ domain-containing p 98.7 6.6E-09 2.2E-13 82.1 4.3 74 101-179 19-92 (106)
155 2daz_A INAD-like protein; PDZ 98.7 2.4E-08 8.2E-13 81.2 7.8 76 101-179 36-112 (124)
156 1n7t_A 99-MER peptide of densi 98.7 1.5E-08 5.2E-13 79.5 6.3 59 117-177 42-100 (103)
157 1te0_A Protease DEGS; two doma 98.7 3.9E-08 1.3E-12 93.4 9.9 70 117-188 243-313 (318)
158 3hpk_A Protein interacting wit 98.7 4.2E-08 1.4E-12 79.9 8.5 72 101-176 31-103 (125)
159 3stj_A Protease DEGQ; serine p 98.7 4.4E-08 1.5E-12 94.0 10.1 71 117-189 262-333 (345)
160 2dc2_A GOPC, golgi associated 98.7 3.7E-08 1.3E-12 77.3 7.9 74 101-178 21-95 (103)
161 2qbw_A PDZ-fibronectin fusion 98.7 7.8E-08 2.7E-12 84.5 10.3 69 117-187 23-94 (195)
162 2ehr_A INAD-like protein; PDZ 98.7 4.2E-08 1.4E-12 78.9 7.7 60 118-178 50-110 (117)
163 3nfk_A Tyrosine-protein phosph 98.7 4.3E-08 1.5E-12 77.5 7.4 74 101-177 29-107 (107)
164 1p1d_A PDZ45, glutamate recept 98.7 6.1E-08 2.1E-12 85.4 8.9 80 100-179 17-99 (196)
165 1vae_A Rhophilin 2, rhophilin, 98.7 1.2E-08 4.1E-13 81.3 3.8 59 118-176 36-94 (111)
166 2hga_A Conserved protein MTH13 98.7 7E-08 2.4E-12 78.5 8.5 64 117-185 24-88 (125)
167 2cs5_A Tyrosine-protein phosph 98.7 2.1E-08 7.1E-13 81.0 5.3 76 101-179 27-107 (119)
168 1x5n_A Harmonin; PDZ domain, u 98.7 5.1E-08 1.7E-12 78.0 7.5 76 100-180 26-102 (114)
169 1ufx_A KIAA1526 protein; PDZ d 98.7 2E-08 7E-13 78.8 5.0 76 101-178 17-97 (103)
170 2d8i_A T-cell lymphoma invasio 98.6 3.8E-08 1.3E-12 78.7 6.4 57 118-177 44-100 (114)
171 2gzv_A PRKCA-binding protein; 98.6 6.9E-08 2.4E-12 77.2 7.9 72 101-176 36-108 (114)
172 3gsl_A Disks large homolog 4; 98.6 1.8E-07 6E-12 82.0 11.1 77 101-178 16-95 (196)
173 3gge_A PDZ domain-containing p 98.6 1.4E-07 4.6E-12 72.2 8.4 71 101-176 16-88 (95)
174 2edv_A FERM and PDZ domain-con 98.6 2.2E-08 7.6E-13 77.6 4.1 59 118-178 31-89 (96)
175 3qo6_A Protease DO-like 1, chl 98.6 8.5E-08 2.9E-12 92.2 9.0 71 118-190 251-333 (348)
176 2krg_A Na(+)/H(+) exchange reg 98.6 2.3E-09 7.8E-14 95.7 -1.9 87 100-191 19-108 (216)
177 2qt5_A Glutamate receptor-inte 98.6 1.9E-07 6.6E-12 82.4 10.3 74 101-178 19-93 (200)
178 3tsz_A Tight junction protein 98.6 7E-08 2.4E-12 94.0 7.6 72 102-178 20-92 (391)
179 1lcy_A HTRA2 serine protease; 98.6 1.8E-07 6.2E-12 89.0 10.3 68 117-188 255-322 (325)
180 1uju_A Scribble; PDZ domain, c 98.6 3E-08 1E-12 79.0 4.0 77 101-178 21-104 (111)
181 1um7_A Synapse-associated prot 98.6 4.1E-08 1.4E-12 78.3 4.4 73 101-178 26-99 (113)
182 2lob_A Golgi-associated PDZ an 98.0 8.1E-09 2.8E-13 82.4 0.0 70 101-174 39-109 (112)
183 3gsl_A Disks large homolog 4; 98.5 1.4E-07 4.9E-12 82.6 7.4 79 102-181 112-193 (196)
184 3rle_A Golgi reassembly-stacki 98.5 1.4E-07 4.7E-12 84.0 6.9 68 117-185 15-85 (209)
185 3r0h_A INAD, inactivation-NO-a 98.5 2.4E-07 8.1E-12 82.1 8.4 70 101-177 125-195 (206)
186 3pv2_A DEGQ; trypsin fold, PDZ 98.5 2.8E-07 9.7E-12 91.5 9.6 69 118-188 282-351 (451)
187 4a8c_A Periplasmic PH-dependen 98.5 4.9E-07 1.7E-11 89.5 10.2 72 117-190 262-334 (436)
188 1z87_A Alpha-1-syntrophin; pro 98.5 1.5E-07 5.1E-12 86.2 6.0 76 100-179 88-164 (263)
189 3rle_A Golgi reassembly-stacki 98.5 2.6E-07 8.7E-12 82.2 7.2 67 118-187 112-181 (209)
190 3shw_A Tight junction protein 98.5 2.3E-07 7.9E-12 91.8 7.5 74 101-179 11-85 (468)
191 2qt5_A Glutamate receptor-inte 98.5 2.8E-07 9.6E-12 81.3 7.3 63 118-181 135-198 (200)
192 2xkx_A Disks large homolog 4; 98.4 7.7E-07 2.6E-11 93.6 9.7 86 101-187 70-162 (721)
193 4a8c_A Periplasmic PH-dependen 98.4 1.2E-06 4.1E-11 86.7 9.9 68 118-188 363-430 (436)
194 1p1d_A PDZ45, glutamate recept 98.3 6.6E-07 2.3E-11 78.6 6.6 75 102-178 120-195 (196)
195 3pv2_A DEGQ; trypsin fold, PDZ 98.3 1.1E-06 3.8E-11 87.2 8.9 65 118-185 386-450 (451)
196 3num_A Serine protease HTRA1; 98.3 6.6E-08 2.2E-12 92.4 0.0 70 117-190 253-322 (332)
197 1ky9_A Protease DO, DEGP, HTRA 98.2 5.1E-07 1.8E-11 89.6 3.3 67 118-186 286-353 (448)
198 4fln_A Protease DO-like 2, chl 98.0 1.4E-05 4.8E-10 80.4 10.1 72 117-189 276-356 (539)
199 2xkx_A Disks large homolog 4; 97.9 2.9E-05 1E-09 81.6 9.2 73 101-178 318-391 (721)
200 1ky9_A Protease DO, DEGP, HTRA 97.9 1.8E-06 6.3E-11 85.6 0.0 65 118-185 383-447 (448)
201 1w9e_A Syntenin 1; cell adhesi 97.7 6.7E-06 2.3E-10 70.1 1.1 38 121-158 110-147 (166)
202 3suz_A Amyloid beta A4 precurs 97.4 2E-05 7E-10 76.6 0.0 55 121-176 318-372 (388)
203 4fln_A Protease DO-like 2, chl 96.4 0.006 2.1E-07 61.3 7.9 57 117-175 414-470 (539)
204 3viv_A 441AA long hypothetical 90.5 0.93 3.2E-05 40.1 8.3 83 209-318 7-93 (230)
205 1y7o_A ATP-dependent CLP prote 87.4 0.91 3.1E-05 39.8 6.0 81 211-319 46-127 (218)
206 1yg6_A ATP-dependent CLP prote 84.9 2 6.7E-05 36.8 6.7 82 210-319 26-108 (193)
207 2cby_A ATP-dependent CLP prote 83.2 1.3 4.6E-05 38.4 5.0 71 222-319 38-109 (208)
208 2f6i_A ATP-dependent CLP prote 80.0 2 7E-05 37.5 4.9 81 211-319 40-120 (215)
209 3qwd_A ATP-dependent CLP prote 75.3 3.5 0.00012 35.6 5.0 80 211-318 28-108 (203)
210 3p2l_A ATP-dependent CLP prote 72.5 4.5 0.00015 34.9 5.0 80 211-318 31-111 (201)
211 1tg6_A Putative ATP-dependent 63.8 10 0.00036 34.3 5.7 80 211-318 83-163 (277)
212 3rst_A Signal peptide peptidas 56.4 11 0.00038 33.2 4.5 70 225-317 31-101 (240)
213 3bl4_A Uncharacterized protein 48.2 30 0.001 27.1 5.3 42 209-250 18-62 (124)
214 2kln_A Probable sulphate-trans 43.4 45 0.0015 25.7 5.8 65 210-274 14-85 (130)
215 3bf0_A Protease 4; bacterial, 41.1 11 0.00037 38.2 2.1 85 209-317 300-393 (593)
216 4f47_A Enoyl-COA hydratase ECH 33.1 65 0.0022 28.8 5.8 103 210-317 28-137 (278)
217 2ka5_A Putative anti-sigma fac 32.7 1.5E+02 0.0052 22.4 7.3 47 210-256 20-68 (125)
218 2j3t_D Trafficking protein par 31.2 75 0.0026 27.5 5.5 52 117-174 44-98 (219)
219 3t6o_A Sulfate transporter/ant 30.6 69 0.0024 24.2 4.9 46 210-255 13-63 (121)
220 1th8_B Anti-sigma F factor ant 29.8 50 0.0017 24.5 3.9 45 211-255 12-58 (116)
221 3qre_A Enoyl-COA hydratase, EC 27.2 1E+02 0.0036 27.8 6.2 104 211-317 39-152 (298)
222 4dgh_A Sulfate permease family 26.6 2.1E+02 0.0072 21.7 7.9 46 210-256 19-65 (130)
223 3lao_A Enoyl-COA hydratase/iso 26.2 2.5E+02 0.0086 24.4 8.4 97 210-317 20-127 (258)
224 2lti_A Astexin1; sidechain-TO- 24.9 22 0.00076 18.7 0.6 11 366-376 4-14 (26)
225 3ny7_A YCHM protein, sulfate t 23.5 1.8E+02 0.006 21.8 6.0 47 209-256 15-62 (118)
226 1sbo_A Putative anti-sigma fac 23.2 65 0.0022 23.5 3.4 46 211-256 13-60 (110)
227 3swx_A Probable enoyl-COA hydr 22.9 3.3E+02 0.011 23.7 8.6 97 210-317 17-124 (265)
228 2c4w_A 3-dehydroquinate dehydr 22.5 49 0.0017 27.5 2.6 50 216-269 55-104 (176)
No 1
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=100.00 E-value=3e-64 Score=495.40 Aligned_cols=364 Identities=53% Similarity=0.931 Sum_probs=318.2
Q ss_pred cchhhHHHHHHHHHHHHhccccccCCcchHHHHHhhhhcCCCCCHHHHHHHHHHHHHhCCCCCCCccChhhhccccccCc
Q 015469 18 LSEENRLFLEAWRTIDRAYVDKTFNGQSWFRYRENALRNEPMNTREETYMAIRKMLATLDDPFTRFLEPEKFNSLRSGTQ 97 (406)
Q Consensus 18 ~~~~~~~f~~~w~~i~~~y~~~~~~~~dW~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~D~ht~~~~~~~~~~~~~~~~ 97 (406)
.++++++|+++|+.++++|+++.++++||++++++|++...+++.++++.++..|+++|+|||+.|++++++..+.....
T Consensus 2 ~~~~~~~f~~~w~~i~~~y~~~~~~~~dW~~~~~~y~~~~~~~~~~~~~~~i~~ml~~L~D~hs~~~~~~~~~~~~~~~~ 81 (388)
T 1fc6_A 2 VTSEQLLFLEAWRAVDRAYVDKSFNGQSWFKLRETYLKKEPMDRRAQTYDAIRKMLAVLDDPFTRFLEPSRLAALRRGTA 81 (388)
T ss_dssp CCHHHHHHHHHHHHHHHHCSCTTGGGCCHHHHHHHHHHHSCCSSHHHHHHHHHHHHHTTCCTTCEEECHHHHHHHHHCSS
T ss_pred CccHHHHHHHHHHHHHHHHhcccccCccHHHHHHHhhhccCCCCHHHHHHHHHHHHHhcCCCcceecCHHHHHHHHHhhc
Confidence 46789999999999999999999999999999999986445678899999999999999999999999999888776677
Q ss_pred ceeeeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeC
Q 015469 98 GALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 177 (406)
Q Consensus 98 ~~~~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~ 177 (406)
+.+.|+|+.+.... ..+++++|..|.++|||+++||++||+|++|||+++.++...++..++++..|++++|+|.|+
T Consensus 82 g~~~giG~~~~~~~---~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~ 158 (388)
T 1fc6_A 82 GSVTGVGLEITYDG---GSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAP 158 (388)
T ss_dssp SSCBBCSEEEEECT---TCSSCEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEET
T ss_pred CceEEEEEEEEEee---cCCCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeC
Confidence 88899999987531 014689999999999999999999999999999999998778888999988999999999999
Q ss_pred Ce---eEEEEEEeeccccCceeeeeeec-----CCCCCCCCceEEEEcCccccchHHHHHHHHHHHhcCCCCeEEEEeCC
Q 015469 178 AE---IRHLALTREKVSLNPVKSRLCVV-----PGPGKSSPRIGYIKLTSFNQNASGAVREAIDTLRSNSVNAFVLDLRD 249 (406)
Q Consensus 178 g~---~~~~~v~~~~~~~~~v~~~~~~~-----~~~~~~~~~igyl~i~~f~~~~~~~~~~~~~~~~~~~~~~lIiDlR~ 249 (406)
++ .+++++++..+..+++.+..++. ......+++||||+|++|.....+++.+++.+++++++++||||||+
T Consensus 159 g~~~~~~~~~l~r~~i~~~~v~~~~~~~~~~~~~~~~~~~~~igYi~i~~F~~~~~~~~~~~l~~l~~~~~~~lIlDLR~ 238 (388)
T 1fc6_A 159 GAPSNTRTLQLTRQKVTINPVTFTTCSNVAAAALPPGAAKQQLGYVRLATFNSNTTAAAQQAFTELSKQGVAGLVLDIRN 238 (388)
T ss_dssp TEEEEEEEEEEECBCCCCCCEEEEEECSCCGGGSCTTCSSSCEEEEEECCBSTTHHHHHHHHHHHHHHTTCSEEEEECTT
T ss_pred CCCcceEEEEEEEceeecCceeeeeeccccccccccccCCCCEEEEEeCccCcchHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 87 78999999988888887665420 00123457999999999998888999999999988899999999999
Q ss_pred CCCCChHHHHHHHHhhccCCcEEEEEcCCCceeeeecCCCCccCCCCCEEEEEcCCCccHHHHHHHHHhcCCCeEEEccc
Q 015469 250 NSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGTDALAASEPLAVLVNKGTASASEILAGALKDNKRAVLFGEP 329 (406)
Q Consensus 250 N~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vLvd~~t~SaaE~~a~~lk~~~~~~ivG~~ 329 (406)
|+||++..+..++++|++++.++++..+.+....+...+ ....+++|++||||++|+||||+|+++||+++++++||++
T Consensus 239 N~GG~~~~~~~~~~~f~~~~~i~~~~~r~~~~~~~~~~~-~~~~~~~pv~VLvn~~taSasEi~a~al~~~~~~~~vG~~ 317 (388)
T 1fc6_A 239 NGGGLFPAGVNVARMLVDRGDLVLIADSQGIRDIYSADG-NSIDSATPLVVLVNRGTASASEVLAGALKDSKRGLIAGER 317 (388)
T ss_dssp CCCBCHHHHHHHHHHHCSSSEEEEEEETTEEEEEEECCS-CCSCSSSCEEEEECTTCCTHHHHHHHHHHHTTSEEEEESC
T ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCceeEEecCC-ccccCCCCEEEEeCCCCccHHHHHHHHHhhCCCEEEEeec
Confidence 999999999999999999998888777777655554432 2234899999999999999999999999999999999999
Q ss_pred CCCCceeeeEEECCCCCeEEEEEeEEEcCCCCccCCCCcccCeecCCCC-CCCcchh
Q 015469 330 TYGKGKIQSVFQLSDGSGLAVTVARYETPAHTDIDKVGVIPDHPLPKTF-PKDEDGF 385 (406)
Q Consensus 330 T~G~~~~~~~~~L~~g~~~~~~~~~~~~~~g~~~e~~Gv~PDi~v~~~~-~~~~~~~ 385 (406)
|+|++.++..++||+|+.+.+|++++++|+|+.+|+.||.|||+|+.+- +...+.+
T Consensus 318 T~Gkg~~~~~~~L~~g~~l~~t~~~~~~p~G~~~~~~Gi~PDi~v~~~~~~~~~~~~ 374 (388)
T 1fc6_A 318 TFGKGLIQTVVDLSDGSGVAVTVARYQTPAGVDINKIGVSPDVQLDPEVLPTDLEGV 374 (388)
T ss_dssp CCCCCEEEEEEECTTSCEEEEEEEEEECTTSCBCTTTCCCCSEECCTTSSCSSHHHH
T ss_pred CCCCCeeeeEEEcCCCCEEEEEEEEEEcCCCCCccCCCcCCCEEeCCcccchhhhhh
Confidence 9999999999999999999999999999999999999999999998763 4334444
No 2
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=2.6e-50 Score=443.52 Aligned_cols=345 Identities=19% Similarity=0.202 Sum_probs=280.6
Q ss_pred CcccchhhHHHHHHHHHHHHhccccccCCcch-HHHHHhhhhc-CCCCCHHHHHHHHHHHHHhCCCCCCCccChhhhccc
Q 015469 15 SLALSEENRLFLEAWRTIDRAYVDKTFNGQSW-FRYRENALRN-EPMNTREETYMAIRKMLATLDDPFTRFLEPEKFNSL 92 (406)
Q Consensus 15 ~~~~~~~~~~f~~~w~~i~~~y~~~~~~~~dW-~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~L~D~ht~~~~~~~~~~~ 92 (406)
..+.++++++|+++|+.|+++|+++. +++|| ++++++|++. ....+..+++.++.+|+++|+|+|+.+. ++++..
T Consensus 654 i~~~~~~~~~~~~~~~~~~~~y~~~~-~~~d~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~d~ht~~~-~~~~~~- 730 (1045)
T 1k32_A 654 SSIHEEFLQMYDEAWKLARDNYWNEA-VAKEISERIYEKYRNLVPLCKTRYDLSNVIVEMQGEYRTSHSYEM-GGTFTD- 730 (1045)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHCSCHH-HHHHHHHHHHHHHHTTGGGCCSHHHHHHHHHHHHHTTCCSCCCEE-CCCCCS-
T ss_pred EChhHHHHHHHHHHHHHHHHhhcCCC-CCCChHHHHHHHHHHhhcccCCHHHHHHHHHHHHHhcCCCcceEC-hhHhcc-
Confidence 45668889999999999999999998 99999 9999999865 4577889999999999999999999664 445443
Q ss_pred cccCcceeeeeEEEEeeccCCCCCCCcEEEEEeCCC--------ChhhhcC--CCCCCEEEEECCEecCCCCHHHHHHHh
Q 015469 93 RSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPG--------GPANRAG--ILSGDVILAIDDTSTESMGIYDAAERL 162 (406)
Q Consensus 93 ~~~~~~~~~g~g~~~~~~~~~~~~~~~~~V~~v~~~--------spA~~aG--l~~GD~I~~Ing~~v~~~~~~~~~~~l 162 (406)
...+.+.|+|+.+... +++++|..|+++ |||+++| |+ ||+|++|||+++..+ .++..++
T Consensus 731 --~~~~~~~g~G~~~~~~------~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~--~~~~~~~ 799 (1045)
T 1k32_A 731 --KDPFRSGRIACDFKLD------GDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAG--SNIYRVL 799 (1045)
T ss_dssp --CCCCCCCBCSEEEEEE------TTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTT--BCHHHHH
T ss_pred --ccccccceecEEEEEe------CCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccch--hhHHHhh
Confidence 2356677899988765 578999999998 9999999 99 999999999999986 4778889
Q ss_pred CCCCCCcEEEEEEeCC-eeEEEEEEeeccccCceeee---------eeecCCCCCCCCceEEEEcCccccchHHHHHHHH
Q 015469 163 QGPEGSPVELTVRSGA-EIRHLALTREKVSLNPVKSR---------LCVVPGPGKSSPRIGYIKLTSFNQNASGAVREAI 232 (406)
Q Consensus 163 ~~~~g~~v~l~v~r~g-~~~~~~v~~~~~~~~~v~~~---------~~~~~~~~~~~~~igyl~i~~f~~~~~~~~~~~~ 232 (406)
+++.|++++|+|.|++ +.+++++++.. ...++.++ ..+ ..+++||||+|++|.....+++.+++
T Consensus 800 ~~~~g~~v~l~v~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~igyi~~~~f~~~~~~~~~~~~ 873 (1045)
T 1k32_A 800 SEKAGTSARIRLSGKGGDKRDLMIDILD-DDRFIRYRSWVEANRRYVHE-----RSKGTIGYIHIPDMGMMGLNEFYRLF 873 (1045)
T ss_dssp HTTTTSEEEEEEECSSSCEEEEEEECBS-CCHHHHHHHHHHHHHHHHHH-----HTTTSEEEEECCCBSHHHHHHHHHHH
T ss_pred cCCCCCEEEEEEECCCCceEEEEEEEcc-cccchhhhhhhhhcceeEEE-----ecCCCEEEEEECccCchHHHHHHHHH
Confidence 9999999999999976 55677777532 11122110 011 23568999999999987788888888
Q ss_pred HHHhcCCCCeEEEEeCCCCCCChHHHHHHHHhhccCCcEEEEEcCCCceeeeecCCCCccCCCCCEEEEEcCCCccHHHH
Q 015469 233 DTLRSNSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGTDALAASEPLAVLVNKGTASASEI 312 (406)
Q Consensus 233 ~~~~~~~~~~lIiDlR~N~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vLvd~~t~SaaE~ 312 (406)
.++ +++++||||||+|+||++..+ ++.+| +++.++++..+.+....+.. ..+++|++||||++|+||||+
T Consensus 874 ~~~--~~~~~liiDlR~N~GG~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~vL~~~~taSa~e~ 943 (1045)
T 1k32_A 874 INE--SSYQGLIVDVRFNGGGFVSQL--IIEKL-MNKRIGYDNPRRGTLSPYPT-----NSVRGKIIAITNEYAGSDGDI 943 (1045)
T ss_dssp HHH--TTSSEEEEECTTCCCBSCHHH--HHHHH-TCBCCEEEEESSSCCEEEST-----TCBCSEEEEEECTTCCTHHHH
T ss_pred HHh--CCCCEEEEEcCcCCCCCHHHH--HHhhc-cCCcEEEEecCCCceeeccc-----cCCCCCEEEEECCCCccHHHH
Confidence 765 489999999999999999865 47765 56677777777776554432 247899999999999999999
Q ss_pred HHHHHhcCCCeEEEcccCCCCceee--eEEECCCCCeEEEE-EeEEEcCCCCccCCCCcccCeecCCCCC----CCcchh
Q 015469 313 LAGALKDNKRAVLFGEPTYGKGKIQ--SVFQLSDGSGLAVT-VARYETPAHTDIDKVGVIPDHPLPKTFP----KDEDGF 385 (406)
Q Consensus 313 ~a~~lk~~~~~~ivG~~T~G~~~~~--~~~~L~~g~~~~~~-~~~~~~~~g~~~e~~Gv~PDi~v~~~~~----~~~~~~ 385 (406)
|+.+||+++++++||++|+| +.++ ..++|++|+.+.+| .+++++|+|+.+|+.||+|||+|+.+.. ..|.+|
T Consensus 944 ~~~~l~~~~~~~~vG~~t~G-g~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~Gi~Pdi~v~~~~~~~~~~~d~~l 1022 (1045)
T 1k32_A 944 FSFSFKKLGLGKLIGTRTWG-GVVGITPKRRLIDGTVLTQPEFAFWFRDAGFGVENYGVDPDVEIEYAPHDYLSGKDPQI 1022 (1045)
T ss_dssp HHHHHHHTTSEEEEESCCCC-CCEECCCCCBCTTSCEECCCCEEEEETTTBTTTTTTCCCCSEECCCCHHHHHTTCCHHH
T ss_pred HHHHHhhcCCEEEEccCCCC-CccccCceEEcCCCCeEEEeeEEEEECCCCCccCCCCccCCEEeCCChHHhccCccHHH
Confidence 99999999999999999999 5443 56899999999998 7899999999999999999999998653 234444
Q ss_pred hhhcc
Q 015469 386 CGCLQ 390 (406)
Q Consensus 386 ~~~~~ 390 (406)
.+|++
T Consensus 1023 ~~a~~ 1027 (1045)
T 1k32_A 1023 DYAID 1027 (1045)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 3
>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=100.00 E-value=2.9e-47 Score=372.69 Aligned_cols=342 Identities=17% Similarity=0.181 Sum_probs=241.7
Q ss_pred HHHHHHHHHhcccc-ccCCcchHHHHHhhhhcCCCCCHHHHHHHHHHHHHhCCCCCCCccChhhhccccccCcceeeeeE
Q 015469 26 LEAWRTIDRAYVDK-TFNGQSWFRYRENALRNEPMNTREETYMAIRKMLATLDDPFTRFLEPEKFNSLRSGTQGALTGVG 104 (406)
Q Consensus 26 ~~~w~~i~~~y~~~-~~~~~dW~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~D~ht~~~~~~~~~~~~~~~~~~~~g~g 104 (406)
+-+|..|++.|+-. ++...+ ......+.++|+..+. .. .|+|.+|+.+..- .. ....|+|
T Consensus 17 ~~i~~~m~~~Ylw~~~ip~~~---------~~~~~~~p~~~f~~l~---~~-~D~~fS~i~~~~~----~~--~~~~G~~ 77 (403)
T 3k50_A 17 IWIDSVMRQEYLWYRDMPSPA---------APDYFQKPEAFLKKAV---AS-MDNGFSKIDSLLD----EP--IPSYGFD 77 (403)
T ss_dssp CHHHHHHHHHCTTGGGSCCCC---------CCCSSSCHHHHHHHHS---CT-TCSSCSEEEECCS----SC--CCBCSEE
T ss_pred HHHHHHHHHhccchhhccCcc---------CccccCCHHHHHHHhC---cc-cCCCceeEccccc----cC--ccccceE
Confidence 35677788887432 221100 0112234456665543 33 3884444433221 11 1366777
Q ss_pred EEEeeccCCCCCCC--cEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCeeE-
Q 015469 105 LSIGYPTASDGSSA--GLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIR- 181 (406)
Q Consensus 105 ~~~~~~~~~~~~~~--~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~~~- 181 (406)
+.+..... .+. .++|..|.++|||++|||++||+|++|||+++.++. +..++++ +|++++|++.|+++..
T Consensus 78 ~~l~~~~~---~~~~~~~~V~~V~~gsPA~~AGL~~GD~I~~InG~~v~~~~---~~~~l~~-~g~~v~l~v~R~g~~~~ 150 (403)
T 3k50_A 78 YTLYKVLD---NDTAYNALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKV---ESELLQG-STRQLQIGVYKEVVGED 150 (403)
T ss_dssp EEEEECTT---CSSCEEEEEEEECTTSHHHHTTCCTTCEEEEETTBCBCTTT---GGGGTSC-SCEEEEEEEEEEEC---
T ss_pred EEEEEcCC---CCcceeEEEEEeCCCChHHHcCCCCCCEEEEECCEEccchh---HHHHhhC-CCCEEEEEEEeCCcccc
Confidence 77654321 011 378999999999999999999999999999999973 5567777 8999999998876432
Q ss_pred -----------EEEEE-eeccccCce-eeeeeecCCCCCCCCceEEEEcCccccc-------hHHHHHHHHHHHhcCCCC
Q 015469 182 -----------HLALT-REKVSLNPV-KSRLCVVPGPGKSSPRIGYIKLTSFNQN-------ASGAVREAIDTLRSNSVN 241 (406)
Q Consensus 182 -----------~~~v~-~~~~~~~~v-~~~~~~~~~~~~~~~~igyl~i~~f~~~-------~~~~~~~~~~~~~~~~~~ 241 (406)
++++. ++.+...|+ ..++++ ..+++||||++++|..+ ..+++.++|++|++++++
T Consensus 151 ~~~~~~~i~~~~~~l~~~r~~~~~pv~~~~v~~-----~~~~~iGYI~i~~F~~~t~~~~~~~~~~l~~al~~l~~~~~~ 225 (403)
T 3k50_A 151 GEVTGGVVPIGETTMPASRSLVDKPVHRFEIIP-----WNGKKVGYLMYNEFKAGPTTDSQAYNDDLRRAFRDFQTGGVN 225 (403)
T ss_dssp --CEEEEEEEEEEEECCCBCCCCCSEEEEEEEE-----ETTEEEEEEEECCBCCCSSTTCCHHHHHHHHHHHHHHHTTCC
T ss_pred cccccccccccceEEEeeeeeeeccceeeeeee-----eCCCcEEEEEEccccCcccccchhhHHHHHHHHHHHHHCCCc
Confidence 23332 122333444 334443 23468999999999763 458999999999999999
Q ss_pred eEEEEeCCCCCCChHHHHHHHHhhccCCc----EEEEE--cCCCce-eeeecCC----CCccCCCCCEEEEEcCCCccHH
Q 015469 242 AFVLDLRDNSGGLFPEGIEIAKIWLDKGV----IVYIC--DSRGVR-DIYDTDG----TDALAASEPLAVLVNKGTASAS 310 (406)
Q Consensus 242 ~lIiDlR~N~GG~~~~~~~l~~~~~~~~~----~~~~~--~~~~~~-~~~~~~~----~~~~~~~~~v~vLvd~~t~Saa 310 (406)
+||||||+|+||.+..+..++++|++++. +++.+ .+.+.. ..+.... .......+|++||||+.|+|||
T Consensus 226 ~lIlDLR~N~GG~l~~a~~la~~f~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vL~~~~taSa~ 305 (403)
T 3k50_A 226 EFVLDLRYNTGGSLDCAQLLCTMLAPADKMNQLLALLRYSDKRVEANQDLTFNPELIQSGANLNLSTVYVLTTNATRGAA 305 (403)
T ss_dssp EEEEECTTCCCBCHHHHHHHHHHHSCGGGTTSEEEEEECCTTCGGGCEEEECCGGGTTTSCCCCCSEEEEEECTTCCTHH
T ss_pred EEEEEcCCCCCCCHHHHHHHHHHhcCCCccceeEEEEEEcCCCCcceeEEeccccccccccccCCCCEEEEECCCCccHH
Confidence 99999999999999999999999999876 45554 333332 2232221 1122345799999999999999
Q ss_pred HHHHHHHhcCCCeEEEcccCCCCceeeeEEE-CCCCCeEEEEEeEEEcCCCCccCCCCcccCeecCCCCCC-Ccchhhhh
Q 015469 311 EILAGALKDNKRAVLFGEPTYGKGKIQSVFQ-LSDGSGLAVTVARYETPAHTDIDKVGVIPDHPLPKTFPK-DEDGFCGC 388 (406)
Q Consensus 311 E~~a~~lk~~~~~~ivG~~T~G~~~~~~~~~-L~~g~~~~~~~~~~~~~~g~~~e~~Gv~PDi~v~~~~~~-~~~~~~~~ 388 (406)
|+|+++||+++++++||++|+|++.++..+. +++|+.+++++.++++|+|+.+++.||+|||+|+.+... .... ...
T Consensus 306 E~~~~~l~~~~~~~~iG~~T~G~~~~~~~~~~~~~g~~l~~t~~~~~~~~G~~~~~~Gi~PDi~v~~~~~~~~~~~-~~~ 384 (403)
T 3k50_A 306 EMVINCLNPYMKVVLIGTKTAGEYVATKPFVHPTDRFILNLVVCNVYNAEEKSDYATGFKPTYEYNEDSYLSTYLP-FGN 384 (403)
T ss_dssp HHHHHHHTTTSEEEEEESCCCCCCEEEEEEECSSSCEEEEEEEEEEECTTSCCCCTTCCCCSEECCGGGCGGGCCC-TTC
T ss_pred HHHHHHHhhCCCEEEEeecCCCCCeeeeEEEeCCCCcEEEEEEEEEECCCCCCccCCCcCceEEeCCCcccccccc-cCC
Confidence 9999999999999999999999998888876 678999999999999999999999999999999875320 0001 112
Q ss_pred cccccchhhcc
Q 015469 389 LQDSASTCNMN 399 (406)
Q Consensus 389 ~~~~~~~~~~~ 399 (406)
.+|+.++.|+.
T Consensus 385 ~~D~~L~~Al~ 395 (403)
T 3k50_A 385 TNETLLNAALK 395 (403)
T ss_dssp TTSHHHHHHHH
T ss_pred CccHHHHHHHH
Confidence 45666666654
No 4
>3dor_A Protein CT_858, CPAF; mature CPAF, dimer, transferase; 2.20A {Chlamydia trachomatis} PDB: 3dpm_A* 3dpn_A 3dja_A
Probab=100.00 E-value=1e-35 Score=295.60 Aligned_cols=348 Identities=17% Similarity=0.221 Sum_probs=234.7
Q ss_pred hhHHHHHHHHHHHHhccccccCC--cchH--H----HHHhhhhcCCCCCHHHHHHHHHHHHHhCCCCCCCccChhhhccc
Q 015469 21 ENRLFLEAWRTIDRAYVDKTFNG--QSWF--R----YRENALRNEPMNTREETYMAIRKMLATLDDPFTRFLEPEKFNSL 92 (406)
Q Consensus 21 ~~~~f~~~w~~i~~~y~~~~~~~--~dW~--~----~~~~~~~~~~~~~~~~~~~~i~~~~~~L~D~ht~~~~~~~~~~~ 92 (406)
.-+.|+.+-++++.+|....++. ..|+ . .+.++. .....+..+|+..+..+++.++|+|+.+..+..
T Consensus 7 ~~~d~~~l~~l~~~kYap~~wK~~~~g~Dl~~~l~~ir~kl~-~e~~~Te~dFq~~L~~~fasl~DGHt~l~~~s~---- 81 (583)
T 3dor_A 7 ALQDLSFLEHLLQVKYAPKTWKEQYLGWDLVQSSVSAQQKLR-TQENPSTSFCQQVLADFIGGLNDFHAGVTFFAI---- 81 (583)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHSCCCHHHHHHHHHHHHH-HSSSCCHHHHHHHHHHHHHTTCCSSCEEEESCC----
T ss_pred HHHHHHHHHHHHhcccCCchhhhccCCcCchhHHHHHHHHHH-ccCCCCHHHHHHHHHHHHhhcCCCceeEeeccc----
Confidence 34678999999999997654332 4443 2 222222 234577899999999999999999999865421
Q ss_pred cccCcceeeeeEEEEe-eccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCC--------------HHH
Q 015469 93 RSGTQGALTGVGLSIG-YPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMG--------------IYD 157 (406)
Q Consensus 93 ~~~~~~~~~g~g~~~~-~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~--------------~~~ 157 (406)
.+..+|+.+. .. ++.++|..+.... ++++.||+|++|||+++..+- ...
T Consensus 82 ------~~a~~Pf~vki~i------DG~i~V~dv~~~~----s~I~vGdEIlsING~pv~e~Lek~~~~~Gsn~~a~~~~ 145 (583)
T 3dor_A 82 ------ESAYLPYTVQKSS------DGRFYFVDIMTFS----SEIRVGDELLEVDGAPVQDVLATLYGSNHKGTAAEESA 145 (583)
T ss_dssp ------CEEECSEEEEECT------TSCEEEEEECSSC----CSSCTTCEEEEETTEEHHHHHHTTSCTTCCCCHHHHHH
T ss_pred ------ccccCCeEEEEEE------CCcEEEEeccccc----cCCCCCCEEEEECCccHHHHHHHHHHhcCCCcHHHHHH
Confidence 1223455554 32 5678887763322 269999999999999986641 011
Q ss_pred HHHHh-------CC-CCCCcEEEEEEe-CCeeEEEEEE----eecccc----Cc------e-----------e-----e-
Q 015469 158 AAERL-------QG-PEGSPVELTVRS-GAEIRHLALT----REKVSL----NP------V-----------K-----S- 197 (406)
Q Consensus 158 ~~~~l-------~~-~~g~~v~l~v~r-~g~~~~~~v~----~~~~~~----~~------v-----------~-----~- 197 (406)
+.+.| .. .+...+++++.+ +|..++++++ ++.+.. .| + + .
T Consensus 146 Al~~Lt~R~~~l~~~~p~~~~tlk~~~~~G~~~~v~~pW~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (583)
T 3dor_A 146 ALRTLFSRMASLGHKVPSGRTTLKIRRPFGTTREVRVKWRYVPEGVGDLATIAPSIRAPQLQKSMRSFFPKKDDAFHRSS 225 (583)
T ss_dssp HHHHHTEEEGGGTCCCCCSEEEEEEECTTSCEEEEEEECEEECCCSCCHHHHGGGCCCCCC-------------------
T ss_pred HHHHHhhhHHhhccCCCCCceEEEEECCCCcEEEEEeeeEEcccccccccccCcchhhccccccchhhccccccccccCc
Confidence 11211 11 133478888854 6777777654 111100 00 0 0 0
Q ss_pred ---------------------eeee-----------cCCC-------------------CCCCC--ceEEEEcCccccch
Q 015469 198 ---------------------RLCV-----------VPGP-------------------GKSSP--RIGYIKLTSFNQNA 224 (406)
Q Consensus 198 ---------------------~~~~-----------~~~~-------------------~~~~~--~igyl~i~~f~~~~ 224 (406)
+.++ +|.. +..+. +||||||++|....
T Consensus 226 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~f~~~~g~~~w~~~~~~~a~i~~~~~~~~~~~~ig~~ri~~~~~~~ 305 (583)
T 3dor_A 226 SLFYSPMVPHFWAELRNHYATSGLKSGYNIGSTDGFLPVIGPVIWESEGLFRAYISSVTDGDGKSHKVGFLRIPTYSWQD 305 (583)
T ss_dssp --------------------------CCSTTCSSCSCCCSSCCSEECCSSSEEEEEEEECSSSCEEEEEEEECCCBCGGG
T ss_pred cccccccChHHHHHHHhhhhccccccccCccccccccCCCCCcccccCCceeeEEEeccccCCCcceeeEEEccccCCcc
Confidence 0000 0000 11233 89999999997432
Q ss_pred -----------HHHHHHHHHHHhcCCCCeEEEEeCCCCCCChHHHHHHHHhhccCCcEEEEE--cC--------------
Q 015469 225 -----------SGAVREAIDTLRSNSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYIC--DS-------------- 277 (406)
Q Consensus 225 -----------~~~~~~~~~~~~~~~~~~lIiDlR~N~GG~~~~~~~l~~~~~~~~~~~~~~--~~-------------- 277 (406)
-.+|.+.++.+. .++++||||+|+||||+......++++|.+++.-.... -.
T Consensus 306 ~~~~~~~~~~~~~~f~~~~~~~~-~~~~~liid~~~n~gg~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~a~~~~~~ 384 (583)
T 3dor_A 306 MEDFDPSGPPPWEEFAKIIQVFS-SNTEALIIDQTNNPGGSVLYLYALLSMLTDRPLELPKHRMILTQDEVVDALDWLTL 384 (583)
T ss_dssp STTCCTTSCCHHHHHHHHHHHHH-HHCSEEEEECCSBCCBCHHHHHHHHHTTCSSCEECCEEEECCCHHHHHHHHHHHHH
T ss_pred cccccccCCcHHHHHHHHHHHhh-cCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCCCcceeeEEecHHHHHHHHHHHH
Confidence 256666666665 38999999999999999999999999999876321110 00
Q ss_pred -------------------------------------------CCceee------e---ecCCCCccCCCCCEEEEEcCC
Q 015469 278 -------------------------------------------RGVRDI------Y---DTDGTDALAASEPLAVLVNKG 305 (406)
Q Consensus 278 -------------------------------------------~~~~~~------~---~~~~~~~~~~~~~v~vLvd~~ 305 (406)
.|.... . ...+.....|++|++||||++
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~l~~~~~G~~t~s~p~pl~g~~~i~p~~~~~~~gPvvVLVN~~ 464 (583)
T 3dor_A 385 LENVDTNVESRLALGDNMEGYTVDLQVAEYLKSFGRQVLNCWSKGDIELSTPIPLFGFEKIHPHPRVQYSKPICVLINEQ 464 (583)
T ss_dssp HTTCCSHHHHHHHHCSEETTEECCHHHHHHHHHHHHHHHHHHHTTCCSSCSCBCGGGCCEECCCSSCCCCSCEEEEECTT
T ss_pred HHhhhhhhhhhhhccccccccCccHHHHHHHHHHHHHHHHHHhCCCceecCCcccccceeeccCCCccCCCCEEEEECCC
Confidence 000000 0 001223457999999999999
Q ss_pred CccHHHHHHHHHhcCCCeEEEcccCCCCceeeeEEECCCCCeE---EEEEeEEEcCCCCccCCCCcccCeecCCCCC---
Q 015469 306 TASASEILAGALKDNKRAVLFGEPTYGKGKIQSVFQLSDGSGL---AVTVARYETPAHTDIDKVGVIPDHPLPKTFP--- 379 (406)
Q Consensus 306 t~SaaE~~a~~lk~~~~~~ivG~~T~G~~~~~~~~~L~~g~~~---~~~~~~~~~~~g~~~e~~Gv~PDi~v~~~~~--- 379 (406)
|+||||+|+++||+++++++||++|+|+++.+..+.||+|+.+ .+|+.++++|+|+.+|+.||.|||+|+.+.+
T Consensus 465 SASASEifA~aLKd~~ra~lVGe~T~Gkg~vq~~~~Lpdg~~l~~lklT~a~~~tp~G~~ie~~GV~PDI~V~~t~~dl~ 544 (583)
T 3dor_A 465 DFSCADFFPVVLKDNDRALIVGTRTAGAGGFVFNVQFPNRTGIKTCSLTGSLAVREHGAFIENIGVEPHIDLPFTANDIR 544 (583)
T ss_dssp BCTHHHHHHHHHHHTTCEEEEESCCCCCCSCEEEECCCCSSCEEEEEEECEEEECTTSCBCTTTCCCCSEECCCCHHHHH
T ss_pred CccHHHHHHHHHHhCCCEEEEeeCCCCCCceeeEEEcCCCCeEEEEEeeeEEEECCCCCCcCCCCcCCcEEeCCCHHHHH
Confidence 9999999999999999999999999999999999999998865 5999999999999999999999999998764
Q ss_pred -CCcchhhhhcc
Q 015469 380 -KDEDGFCGCLQ 390 (406)
Q Consensus 380 -~~~~~~~~~~~ 390 (406)
..|.++++|+.
T Consensus 545 ~GrD~ql~~AV~ 556 (583)
T 3dor_A 545 YKGYSEYLDKVK 556 (583)
T ss_dssp TTCCHHHHHHHH
T ss_pred cCCCHHHHHHHH
Confidence 23444444443
No 5
>1j7x_A IRBP, interphotoreceptor retinoid-binding protein; beta BETA alpha spiral, transport protein; 1.80A {Xenopus laevis} SCOP: c.14.1.2
Probab=100.00 E-value=6.9e-34 Score=269.83 Aligned_cols=274 Identities=16% Similarity=0.173 Sum_probs=192.0
Q ss_pred hHHHHHHHHHHHHhccccccCCcchHHHHHhhhh--cCCCCCHHHHHHHHHHHHHhC-CCCCCCccChhhhccccccCcc
Q 015469 22 NRLFLEAWRTIDRAYVDKTFNGQSWFRYRENALR--NEPMNTREETYMAIRKMLATL-DDPFTRFLEPEKFNSLRSGTQG 98 (406)
Q Consensus 22 ~~~f~~~w~~i~~~y~~~~~~~~dW~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~L-~D~ht~~~~~~~~~~~~~~~~~ 98 (406)
..+++.+|..++++|++++ +. .++.+.+.. .....+.+++...+.+++..+ +|+|..+....+..
T Consensus 5 ~~vv~~~~~~l~~~Y~f~~-~~---~a~~~~l~~~~~~~i~~~~~La~~Lt~~lq~~~~D~hl~v~~~~~~~-------- 72 (302)
T 1j7x_A 5 THVLHQLCDILANNYAFSE-RI---PTLLQHLPNLDYSTVISEEDIAAKLNYELQSLTEDPRLVLKSKTDTL-------- 72 (302)
T ss_dssp HHHHHHHHHHHHHHCSCGG-GH---HHHHHHGGGSCCSSCCSHHHHHHHHHHHHHHHHCCTTCEEEEGGGSC--------
T ss_pred HHHHHHHHHHHHHhCCCHH-HH---HHHHHHHhcCCcccCCCHHHHHHHHHhhhhhccCCCcEEEEeCCccc--------
Confidence 4678999999999999987 22 255555432 235778899999999999995 99998653211100
Q ss_pred eeeeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCC
Q 015469 99 ALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 178 (406)
Q Consensus 99 ~~~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g 178 (406)
.. + ..+|+... + + .........+
T Consensus 73 --------~~-p----------------~~~~~~~~-~------------p---~~~~~~~~~~---------------- 95 (302)
T 1j7x_A 73 --------VM-P----------------GDSIQAEN-I------------P---EDEAMLQALV---------------- 95 (302)
T ss_dssp --------CC-C----------------CCCCCGGG-C------------C---SSHHHHHHHH----------------
T ss_pred --------cC-c----------------cccccCCC-C------------C---ccHHHHHHhh----------------
Confidence 00 0 00010000 0 0 0000011111
Q ss_pred eeEEEEEEeeccccCceeeeeeecCCCCCCCCceEEEEcCccccc-hHHHHHHHHHHHh---cCCCCeEEEEeCCCCCCC
Q 015469 179 EIRHLALTREKVSLNPVKSRLCVVPGPGKSSPRIGYIKLTSFNQN-ASGAVREAIDTLR---SNSVNAFVLDLRDNSGGL 254 (406)
Q Consensus 179 ~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~igyl~i~~f~~~-~~~~~~~~~~~~~---~~~~~~lIiDlR~N~GG~ 254 (406)
. +++..++++ ++||||+|++|... ..+++.+++.+.. -+++++||||||+|+||+
T Consensus 96 ------------~-~~~~~~~l~--------~~igYi~i~~F~~~~~~~~~~~~l~~~~~~~~~~~~~LIiDLR~N~GG~ 154 (302)
T 1j7x_A 96 ------------N-TVFKVSILP--------GNIGYLRFDQFADVSVIAKLAPFIVNTVWEPITITENLIIDLRYNVGGS 154 (302)
T ss_dssp ------------H-HHCEEEEET--------TTEEEEECCCBCCHHHHHHHHHHHHHHTHHHHTTCSEEEEECTTCCCBC
T ss_pred ------------c-CceEEEEeC--------CCEEEEEEcccCChhhHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 0 223444442 48999999999875 3566777763321 148999999999999999
Q ss_pred hHHHHHHHHhhccCCc---EEEEEcCCCce-eeeecCCC---CccCCCCCEEEEEcCCCccHHHHHHHHHhcCCCeEEEc
Q 015469 255 FPEGIEIAKIWLDKGV---IVYICDSRGVR-DIYDTDGT---DALAASEPLAVLVNKGTASASEILAGALKDNKRAVLFG 327 (406)
Q Consensus 255 ~~~~~~l~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~---~~~~~~~~v~vLvd~~t~SaaE~~a~~lk~~~~~~ivG 327 (406)
+..+..++++|++++. +++...+.+.. ..+...+. ....+++|++||||++|+||||+|+++||+++++++||
T Consensus 155 ~~~~~~l~~~f~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~~~~~~~pvvVLvn~~TaSAsE~~a~alq~~~~a~vVG 234 (302)
T 1j7x_A 155 STAVPLLLSYFLDPETKIHLFTLHNRQQNSTDEVYSHPKVLGKPYGSKKGVYVLTSHQTATAAEEFAYLMQSLSRATIIG 234 (302)
T ss_dssp STTHHHHHHTTSCSSCCCEEEEEEETTTTCCEEEECCSCCSSCCCCSSSEEEEEECTTCCTHHHHHHHHHHHTTCCEEEE
T ss_pred hhHHHHHHHHhcCCCcceeeEEEEccCCCCceeecccccccCCccCCCCCEEEEeCCCcCcHHHHHHHHHHhCCCEEEEc
Confidence 9999999999998864 45555555542 22222211 12237899999999999999999999999999999999
Q ss_pred ccCCCCceeeeEEECCCC-CeEEEEEeEEEcCCCCccCCCCcccCeecCCCCCCCcchhhhhcc
Q 015469 328 EPTYGKGKIQSVFQLSDG-SGLAVTVARYETPAHTDIDKVGVIPDHPLPKTFPKDEDGFCGCLQ 390 (406)
Q Consensus 328 ~~T~G~~~~~~~~~L~~g-~~~~~~~~~~~~~~g~~~e~~Gv~PDi~v~~~~~~~~~~~~~~~~ 390 (406)
++|+|++..+..++||+| ..+.+|+.++++|+|+.+++.||.|||+|+. ++.|++|++
T Consensus 235 ~~T~Gk~~~~~~~~L~~g~~~lt~p~~~~~~p~G~~~~~~Gi~PDi~v~~-----d~~L~~A~~ 293 (302)
T 1j7x_A 235 EITSGNLMHSKVFPFGDTQLSVTVPIINFIDSNGDYWLGGGVVPDAIVLA-----DEALDKAKE 293 (302)
T ss_dssp SCCCCCCSCEEEEECTTSSEEEEEECEEEEETTSCBCCCSCCCCSEECCG-----GGHHHHHHH
T ss_pred ccCCCCCCCceEEEeCCCcEEEEEEEEEEECCCCCccCCcCcCCCeeeCH-----HHHHHHHHH
Confidence 999999999999999997 4556666899999999999999999999986 456666654
No 6
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=99.43 E-value=3.3e-13 Score=109.91 Aligned_cols=105 Identities=18% Similarity=0.180 Sum_probs=79.2
Q ss_pred HhCCCCCCCccChhhhccccccCcceeeeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCC
Q 015469 74 ATLDDPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTES 152 (406)
Q Consensus 74 ~~L~D~ht~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~ 152 (406)
..+.|+|+.|+++.+++.+.....+...++|+.+...........+++|..|.++|||+++| |++||+|++|||+++.+
T Consensus 14 ~~~~D~~~~y~~~~~~~~~~v~l~~~~~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~ 93 (121)
T 2kom_A 14 SENLYFQGSYNTKKIGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVG 93 (121)
T ss_dssp -------CCCCCCCSCEEEEEEEECCTTCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTT
T ss_pred ccccCccccccCccCCeEEEEEEEcCCCcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCC
Confidence 45679999999999888776555566678898886542111112579999999999999999 99999999999999999
Q ss_pred CCHHHHHHHhCCC-CCCcEEEEEEeCC
Q 015469 153 MGIYDAAERLQGP-EGSPVELTVRSGA 178 (406)
Q Consensus 153 ~~~~~~~~~l~~~-~g~~v~l~v~r~g 178 (406)
++..++.++++.. .++++.|+|.|++
T Consensus 94 ~~~~~~~~~l~~~~~g~~v~l~v~R~g 120 (121)
T 2kom_A 94 KSQEEVVSLLRSTKMEGTVSLLVFRQE 120 (121)
T ss_dssp SCHHHHHHHHHHCCSSCEEEEEEEECC
T ss_pred CCHHHHHHHHhcCCCCCEEEEEEEeCC
Confidence 8778888888764 5889999998876
No 7
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=99.39 E-value=9.5e-13 Score=105.43 Aligned_cols=100 Identities=20% Similarity=0.244 Sum_probs=81.1
Q ss_pred CCCccChhhhccccccCcceeeeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHH
Q 015469 80 FTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDA 158 (406)
Q Consensus 80 ht~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~ 158 (406)
||.|+++++++.+.........++|+.+...........+++|..|.++|||+++| |++||+|++|||+++.+++..++
T Consensus 1 ~s~y~~~~~~~~~~~~l~~~~~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~ 80 (111)
T 2koj_A 1 GSVYNTKKVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEV 80 (111)
T ss_dssp CCCCCCSSSCEEEEEEEECBTTBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHH
T ss_pred CCcccCcccCcEEEEEEEECCCccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHH
Confidence 89999999888776555556678999887542111112579999999999999999 99999999999999998878888
Q ss_pred HHHhCCC-CCCcEEEEEEeCCe
Q 015469 159 AERLQGP-EGSPVELTVRSGAE 179 (406)
Q Consensus 159 ~~~l~~~-~g~~v~l~v~r~g~ 179 (406)
..+++.. .++++.|+|.|+++
T Consensus 81 ~~~l~~~~~g~~v~l~v~R~~~ 102 (111)
T 2koj_A 81 VSLLRSTKMEGTVSLLVFRQEE 102 (111)
T ss_dssp HHHHHHCCCSSEEEEEEEECCC
T ss_pred HHHHHhCCCCCeEEEEEEeCCC
Confidence 8888764 58899999988775
No 8
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=99.24 E-value=2.6e-11 Score=97.21 Aligned_cols=101 Identities=24% Similarity=0.334 Sum_probs=66.9
Q ss_pred HHhCCCCCCCccChhhhccccccCcceeeeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecC
Q 015469 73 LATLDDPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTE 151 (406)
Q Consensus 73 ~~~L~D~ht~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~ 151 (406)
...+.|+|+.|+++.+.....-. ....++|+.+..... ...+++|..|.++|||+++| |++||+|++|||+++.
T Consensus 9 ~~~~~d~~t~~~~~~~~~~v~l~--~~~~glG~~l~~~~~---~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~ 83 (112)
T 2r4h_A 9 SGVDLGTENLYFQSMDFYTVELE--RGAKGFGFSLRGGRE---YNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTK 83 (112)
T ss_dssp --------------CCEEEEEEE--CBTTBTSEEEEECGG---GTCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECT
T ss_pred ccCCCCCcccccCCCceEEEEEE--cCCCccCEEEecccc---CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECC
Confidence 34578999999998876644322 122468888754211 13578999999999999999 9999999999999999
Q ss_pred CCCHHHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 152 SMGIYDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 152 ~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
++...++..+++. .++++.|+|.|++.
T Consensus 84 ~~~~~~~~~~l~~-~g~~v~l~v~R~~~ 110 (112)
T 2r4h_A 84 NMKHSRAIELIKN-GGRRVRLFLKRGET 110 (112)
T ss_dssp TCCHHHHHHHHHT-TTTEEEEEEECCEE
T ss_pred CCCHHHHHHHHHc-CCCeEEEEEEeCCc
Confidence 9877888877765 67889999988765
No 9
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=99.22 E-value=2.7e-11 Score=97.85 Aligned_cols=101 Identities=20% Similarity=0.263 Sum_probs=71.4
Q ss_pred CCCCCCCccChhhhccccccCcceeeeeEEEEeeccCC--CCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCC
Q 015469 76 LDDPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTAS--DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTES 152 (406)
Q Consensus 76 L~D~ht~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~--~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~ 152 (406)
..|||+.|+.++++....-. .+. .++|+.+...... .....+++|..|.++|||+++| |++||+|++|||+++.+
T Consensus 12 ~~dp~s~y~~~~~~~~v~l~-k~~-~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~ 89 (117)
T 2byg_A 12 DLGTENLYFQSMTVVEIKLF-KGP-KGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEE 89 (117)
T ss_dssp --------CEEEEEEEEEEE-CBT-TBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTT
T ss_pred CCCCcccccCCCceEEEEEE-eCC-CCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCC
Confidence 45999999999887654332 222 6888888642110 0113479999999999999999 99999999999999998
Q ss_pred CCHHHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 153 MGIYDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 153 ~~~~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
.+..++..+++. .++++.|+|.|+++
T Consensus 90 ~~~~~~~~~l~~-~g~~v~l~v~R~~~ 115 (117)
T 2byg_A 90 VTHEEAVAILKN-TSEVVYLKVGKPTT 115 (117)
T ss_dssp CCHHHHHHHHHT-CCSEEEEEEEEEEE
T ss_pred CCHHHHHHHHHc-CCCeEEEEEEeCCc
Confidence 878888888875 47899999988654
No 10
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=99.22 E-value=1.2e-12 Score=105.46 Aligned_cols=96 Identities=23% Similarity=0.338 Sum_probs=74.8
Q ss_pred HHHHHHhCCCCCCCccChhhhccccccCcceeeeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCE
Q 015469 69 IRKMLATLDDPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDT 148 (406)
Q Consensus 69 i~~~~~~L~D~ht~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~ 148 (406)
+..|+..| |+|+.++.++.... +|+.+.... ...+++|..|.++|||+++||++||+|++|||+
T Consensus 5 ~~~~~~~l-dp~~~~l~~~~~~~-----------~G~~l~~~~----~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~ 68 (114)
T 2edz_A 5 SSGMASTF-NPRECKLSKQEGQN-----------YGFFLRIEK----DTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGV 68 (114)
T ss_dssp CCCCCCCC-CCEEEEEECCTTCC-----------CSCEEECCT----TCCSCEEECCCTTCTTGGGTCCTTCEEEEESSS
T ss_pred hhhHhhcC-CCEEEEEeCCCCCc-----------ccEEEEEec----CCCCeEEEEeCCCChHHHcCCCCCCEEEEECCE
Confidence 44577788 89998887755432 333333221 145789999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHhCCCCCCcEEEEEEeCCeeE
Q 015469 149 STESMGIYDAAERLQGPEGSPVELTVRSGAEIR 181 (406)
Q Consensus 149 ~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~~~ 181 (406)
++.++...++...++. .|+++.++|.|+++..
T Consensus 69 ~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~~~ 100 (114)
T 2edz_A 69 FVDKEEHAQVVELVRK-SGNSVTLLVLDGDSYE 100 (114)
T ss_dssp BCSSSCHHHHHHHHHH-TCSEEEEEEECHHHHH
T ss_pred ECCCCCHHHHHHHHHc-CCCEEEEEEEECCcce
Confidence 9999877888888875 4889999999877644
No 11
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=99.19 E-value=2.2e-11 Score=124.95 Aligned_cols=165 Identities=16% Similarity=0.115 Sum_probs=109.0
Q ss_pred CCCCcccchhhHHHHHHHHHHHHhccccccCCcchHHHHHhhhhcCCCCCHHHHHHHHHHHHHhCCCCCCCccChhhhcc
Q 015469 12 ETPSLALSEENRLFLEAWRTIDRAYVDKTFNGQSWFRYRENALRNEPMNTREETYMAIRKMLATLDDPFTRFLEPEKFNS 91 (406)
Q Consensus 12 ~~~~~~~~~~~~~f~~~w~~i~~~y~~~~~~~~dW~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~D~ht~~~~~~~~~~ 91 (406)
+..++..+..++.|+++++.+.+.|.. +.++++++.+.+.+.+....+ ..+|++....-...+ +...++.....+.
T Consensus 388 D~~lR~~s~g~~sldd~mr~l~~~~~~-~~~~~t~~d~~~~~e~~sG~d-l~~ff~~~l~~t~~~--p~~~~l~~~G~~l 463 (597)
T 4fgm_A 388 DLMLRLQSDHKLTLARVMKELWHEFGK-TSIGTADDTVINWLNQYPGID-ISDFLKDALYNKESL--SLVELLQNFGVMV 463 (597)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHTT-TTCCBCTTHHHHHHHTSTTCC-CHHHHHHHHHSCSCC--CCHHHHHTTTEEE
T ss_pred HHHHHhhcCCchHHHHHHHHHHHHhCc-CCCCCCHHHHHHHHHHhcCcC-HHHHHHHHHhCCCCc--chhHHHhhcceEE
Confidence 344455555566788888888877754 235778888877776655443 355555443322222 3322332222211
Q ss_pred cccc------------CcceeeeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHH
Q 015469 92 LRSG------------TQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAA 159 (406)
Q Consensus 92 ~~~~------------~~~~~~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~ 159 (406)
-... ......++|+.+... .++++|..|.++|||+++||++||+|++|||+++.. .++.
T Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~------~~gv~V~~V~~~spA~~AGL~~GD~I~aInG~~v~~---~~l~ 534 (597)
T 4fgm_A 464 QKQVPVDDNSVGGKASEQPARVNFGAKYKAS------PQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQATE---QSVK 534 (597)
T ss_dssp EEECCSSTTCCCSCCCSCCCSCCCSEEEEEE------TTEEEEEEECTTSHHHHHTCCTTCEEEEETTEECCT---TTHH
T ss_pred EeccCCccccccccccccCCccccceEEecc------CCeEEEEEeCCCChHHHCCCCCCCEEEEECCEECCH---HHHH
Confidence 0000 111234677777543 458999999999999999999999999999999953 4566
Q ss_pred HHhCC-CCCCcEEEEEEeCCeeEEEEEEeec
Q 015469 160 ERLQG-PEGSPVELTVRSGAEIRHLALTREK 189 (406)
Q Consensus 160 ~~l~~-~~g~~v~l~v~r~g~~~~~~v~~~~ 189 (406)
+.+.. ++|++++++|.|+|+.++++++...
T Consensus 535 ~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~ 565 (597)
T 4fgm_A 535 RILERYIPGDTVTIHAFRRDELMTLELTWQE 565 (597)
T ss_dssp HHHTTCCTTCEEEEEEEETTEEEEEEEECCC
T ss_pred HHHHhcCCCCEEEEEEEECCEEEEEEEEecC
Confidence 66654 5789999999999999988887654
No 12
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=99.19 E-value=1e-10 Score=97.33 Aligned_cols=70 Identities=24% Similarity=0.320 Sum_probs=58.1
Q ss_pred CCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCeeEEEEEE
Q 015469 117 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLALT 186 (406)
Q Consensus 117 ~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~~~~~~v~ 186 (406)
..+++|..|.++|||+++||++||+|++|||+++.+++..++..+++...|+++.++|.|+++..++.+.
T Consensus 63 ~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~v~~~ 132 (139)
T 2vz5_A 63 DKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQQS 132 (139)
T ss_dssp CCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHCCTTCSEEEEEEEECC-------C
T ss_pred CCCEEEEEECCCCHHHHCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCEEEEEEEECCEEEEEEEe
Confidence 4689999999999999999999999999999999987778999999887889999999999887666543
No 13
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=99.17 E-value=4.1e-11 Score=95.30 Aligned_cols=100 Identities=26% Similarity=0.410 Sum_probs=75.5
Q ss_pred CCCCccChhhhccccccC--cceeeeeEEEEeeccCC--CCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCC
Q 015469 79 PFTRFLEPEKFNSLRSGT--QGALTGVGLSIGYPTAS--DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESM 153 (406)
Q Consensus 79 ~ht~~~~~~~~~~~~~~~--~~~~~g~g~~~~~~~~~--~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~ 153 (406)
+|+ |+.+++++.+.... .....++|+.+...... .....+++|..|.++|||+++| |++||+|++|||+++.++
T Consensus 2 s~~-~~~~~~~~~~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~ 80 (108)
T 2jre_A 2 SHG-YSDASGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGM 80 (108)
T ss_dssp CCC-CCSSSSCEEEEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTS
T ss_pred Ccc-cccccCcEEEEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCC
Confidence 454 44566666555444 45667889888542110 0124579999999999999999 999999999999999998
Q ss_pred CHHHHHHHhCCCCCCcEEEEEEeCCee
Q 015469 154 GIYDAAERLQGPEGSPVELTVRSGAEI 180 (406)
Q Consensus 154 ~~~~~~~~l~~~~g~~v~l~v~r~g~~ 180 (406)
...++..+++. .+.++.|+|.|+++.
T Consensus 81 ~~~~~~~~l~~-~g~~v~l~v~R~~~~ 106 (108)
T 2jre_A 81 AQSDVVEVLRN-AGNPVRLLLIRRLPL 106 (108)
T ss_dssp CHHHHHHHHHH-HCSEEEEEEEECCCC
T ss_pred CHHHHHHHHHc-CCCeEEEEEEeCCcC
Confidence 77888888875 678999999887753
No 14
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=99.15 E-value=2.1e-10 Score=91.73 Aligned_cols=86 Identities=23% Similarity=0.373 Sum_probs=72.0
Q ss_pred eeeeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCC-CCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeC
Q 015469 99 ALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGI-LSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 177 (406)
Q Consensus 99 ~~~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl-~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~ 177 (406)
.+.++|+.+.... ...+++|..|.++|||+++|| ++||+|++|||+++.++...++..+++...|+++.+++.|+
T Consensus 11 ~~~glG~~~~~~~----~~~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~ 86 (112)
T 1qau_A 11 KVGGLGFLVKERV----SKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRG 86 (112)
T ss_dssp TTTBTSEEEEECS----SSSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEEEEEC
T ss_pred CCCceeEEEEecC----CCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCcEEEEEEeC
Confidence 3457888876542 134799999999999999998 99999999999999997778888888777789999999999
Q ss_pred CeeEEEEEEee
Q 015469 178 AEIRHLALTRE 188 (406)
Q Consensus 178 g~~~~~~v~~~ 188 (406)
++..++++...
T Consensus 87 g~~~~~~~~~~ 97 (112)
T 1qau_A 87 PEGFTTHLETT 97 (112)
T ss_dssp CTTSEEEEEEE
T ss_pred CcccceEeeee
Confidence 98887777654
No 15
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=99.15 E-value=3.7e-11 Score=93.80 Aligned_cols=92 Identities=21% Similarity=0.312 Sum_probs=70.7
Q ss_pred CCCCCccChhhhccccccCcceeeeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHH
Q 015469 78 DPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYD 157 (406)
Q Consensus 78 D~ht~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~ 157 (406)
|||+.+.+... .+ .....++|+.+.... ...+++|..|.++|||+++||++||+|++|||+++.+++..+
T Consensus 3 Dp~~~~~~~~~--~l----~~~~~g~G~~~~~~~----~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~ 72 (98)
T 2jxo_A 3 DPFTMLRPRLC--TM----KKGPSGYGFNLHSDK----SKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGD 72 (98)
T ss_dssp CSSCSSCCEEE--EE----ECTTTCCCEEEECCC----SSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHH
T ss_pred CCCccCCcEEE--EE----EeCCCcccEEEEecC----CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHH
Confidence 78887765422 11 112357888876431 134799999999999999999999999999999999977789
Q ss_pred HHHHhCCCCCCcEEEEEEeCCe
Q 015469 158 AAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 158 ~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
+..+++...++.+.+++.|+++
T Consensus 73 ~~~~l~~~~~~~~~l~v~R~g~ 94 (98)
T 2jxo_A 73 VVSAIRAGGDETKLLVVDRETD 94 (98)
T ss_dssp HHHHHHTTTTEEEEEECCHHHH
T ss_pred HHHHHHhCCCcEEEEEEECCch
Confidence 9888887777777888877654
No 16
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.15 E-value=3.1e-11 Score=97.32 Aligned_cols=99 Identities=22% Similarity=0.264 Sum_probs=75.5
Q ss_pred CCCCCCccChhhhccccccCcceeeeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCH
Q 015469 77 DDPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGI 155 (406)
Q Consensus 77 ~D~ht~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~ 155 (406)
.|||+.|+.+.+..... ......++|+.+..... ...++++|..|.++|||+++| |++||+|++|||+++.++..
T Consensus 6 ~Dp~s~~~~~~~~~~v~--l~~~~~glG~~l~~~~~--~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~ 81 (116)
T 2dm8_A 6 SGPATCPIVPGQEMIIE--ISKGRSGLGLSIVGGKD--TPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSH 81 (116)
T ss_dssp CCSSSCCCCTTSCEEEE--EECCSSCCCCCCBCCTT--SSCSSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCH
T ss_pred CCcccCccCCCCEEEEE--EEECCCcccEEEeCCCC--CCcCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCH
Confidence 39999999987754332 12334577877653211 011489999999999999999 99999999999999999877
Q ss_pred HHHHHHhCCCCCCcEEEEEEeCCee
Q 015469 156 YDAAERLQGPEGSPVELTVRSGAEI 180 (406)
Q Consensus 156 ~~~~~~l~~~~g~~v~l~v~r~g~~ 180 (406)
.++..+++.. ++++.|+|.|++..
T Consensus 82 ~~~~~~l~~~-~~~v~l~v~R~~~~ 105 (116)
T 2dm8_A 82 EEAITALRQT-PQKVRLVVYRDEAH 105 (116)
T ss_dssp HHHHHHHHTC-CSEEEEEEECCSSC
T ss_pred HHHHHHHHhC-CCeEEEEEEeCCcc
Confidence 8888888754 47899999887754
No 17
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.14 E-value=1.7e-11 Score=96.57 Aligned_cols=95 Identities=26% Similarity=0.356 Sum_probs=72.9
Q ss_pred CCccChhhhccccccCcceeeeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHH
Q 015469 81 TRFLEPEKFNSLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAA 159 (406)
Q Consensus 81 t~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~ 159 (406)
+.|+++++++.+.........++|+.+..... ...+++|..|.++|||+++| |++||+|++|||+++.++...++.
T Consensus 2 S~~~~~~~~~~~~v~l~~~~~g~G~~~~~~~~---~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~ 78 (103)
T 1wfv_A 2 SSGSSGQDFDYFTVDMEKGAKGFGFSIRGGRE---YKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAI 78 (103)
T ss_dssp CCCCSCCCSCCEECCEECCTTSSSBCCEEETT---TTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHH
T ss_pred CCCCCccCceEEEEEEecCCCcCCEEEecccc---CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence 55777777665544444444567877654311 12378999999999999999 999999999999999998778887
Q ss_pred HHhCCCCCCcEEEEEEeCCe
Q 015469 160 ERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 160 ~~l~~~~g~~v~l~v~r~g~ 179 (406)
.+++ ..++++.|+|.|+++
T Consensus 79 ~~~~-~~g~~v~l~v~R~~~ 97 (103)
T 1wfv_A 79 ELIK-SGGRRVRLLLKRGTG 97 (103)
T ss_dssp HHHH-HHCSEECEEEECTTC
T ss_pred HHHH-cCCCeEEEEEEECCC
Confidence 7776 567899999988765
No 18
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=99.12 E-value=1.2e-10 Score=89.60 Aligned_cols=76 Identities=28% Similarity=0.321 Sum_probs=62.2
Q ss_pred eeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCeeE
Q 015469 102 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIR 181 (406)
Q Consensus 102 g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~~~ 181 (406)
++|+.+..... ...+++|..|.++|||+++||++||+|++|||+++.++...++..++.. .++++.+++.|+++..
T Consensus 14 ~~G~~l~~~~~---~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~g~~~ 89 (91)
T 2pkt_A 14 PWGFRLVGGKD---FEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKG-CTDNLTLTVARSEHES 89 (91)
T ss_dssp CCSEEEEEEGG---GTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHT-CSSEEEEEEEEECCCC
T ss_pred CCCEEEEccCC---CCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECCccc
Confidence 46666643210 1247899999999999999999999999999999999877788888876 8899999999987643
No 19
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=99.12 E-value=7.9e-11 Score=91.53 Aligned_cols=79 Identities=32% Similarity=0.480 Sum_probs=63.8
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCee
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEI 180 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~~ 180 (406)
.++|+.+...... ....+++|..|.++|||+++||++||+|++|||+++.++...++..+++.. |+++.|+|.|+++.
T Consensus 14 ~~~G~~l~~~~~~-~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~~ 91 (96)
T 2v90_A 14 QGFGFLLREEKGL-DGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQ-GSCVSLTVVDPEAD 91 (96)
T ss_dssp TBSCEEEEEEECT-TSCEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHTT-TTEEEEEEECCCTT
T ss_pred CcccEEEEeccCC-CCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEECCCCc
Confidence 3678777543110 112368999999999999999999999999999999998778888888765 89999999998764
Q ss_pred E
Q 015469 181 R 181 (406)
Q Consensus 181 ~ 181 (406)
.
T Consensus 92 ~ 92 (96)
T 2v90_A 92 R 92 (96)
T ss_dssp S
T ss_pred c
Confidence 3
No 20
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=99.12 E-value=1.7e-10 Score=93.22 Aligned_cols=100 Identities=18% Similarity=0.238 Sum_probs=70.0
Q ss_pred CCCCCCCccChhhhccccccCcceeeeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCC
Q 015469 76 LDDPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMG 154 (406)
Q Consensus 76 L~D~ht~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~ 154 (406)
.+|+|+.|+.+...+...-. +....++|+.+...........+++|..|.++|||+++| |++||+|++|||+++.+++
T Consensus 12 ~~~~~~~~~~~~~~~~v~l~-k~~~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~ 90 (118)
T 3b76_A 12 DLGTENLYFQSMHEKVVNIQ-KDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVS 90 (118)
T ss_dssp ------CCCEEEEEEEEEEE-CCTTCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSC
T ss_pred CCCccccccCCCCcEEEEEE-eCCCCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC
Confidence 35788888887665433221 233457888876432111123468999999999999999 9999999999999999887
Q ss_pred HHHHHHHhCCCCCCcEEEEEEeC
Q 015469 155 IYDAAERLQGPEGSPVELTVRSG 177 (406)
Q Consensus 155 ~~~~~~~l~~~~g~~v~l~v~r~ 177 (406)
..++..+++.. +.++.|+|.|.
T Consensus 91 ~~~~~~~l~~~-~~~v~L~v~R~ 112 (118)
T 3b76_A 91 RSEAVALLKRT-SSSIVLKALEV 112 (118)
T ss_dssp HHHHHHHHHSC-CSEEEEEEEEE
T ss_pred HHHHHHHHHcC-CCeEEEEEEEC
Confidence 88998888854 67888888763
No 21
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.11 E-value=2e-10 Score=91.63 Aligned_cols=83 Identities=27% Similarity=0.449 Sum_probs=64.9
Q ss_pred ceeeeeEEEEeeccC---CCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEE
Q 015469 98 GALTGVGLSIGYPTA---SDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTV 174 (406)
Q Consensus 98 ~~~~g~g~~~~~~~~---~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 174 (406)
....++|+.+..... ......+++|..|.++|||+++||++||+|++|||+++.+....++...+.. .++++.|+|
T Consensus 23 ~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v 101 (110)
T 1x5q_A 23 RQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRG-AGTAVQMRV 101 (110)
T ss_dssp CSSSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHS-CCSEEEEEE
T ss_pred cCCCeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHhhC-CCCeEEEEE
Confidence 346788888863111 0112468999999999999999999999999999999999866666666654 789999999
Q ss_pred EeCCeeE
Q 015469 175 RSGAEIR 181 (406)
Q Consensus 175 ~r~g~~~ 181 (406)
.|+++..
T Consensus 102 ~R~g~~~ 108 (110)
T 1x5q_A 102 WRESGPS 108 (110)
T ss_dssp EECSSCC
T ss_pred EECCccC
Confidence 9987643
No 22
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=99.11 E-value=3.3e-11 Score=98.82 Aligned_cols=103 Identities=19% Similarity=0.281 Sum_probs=77.2
Q ss_pred CCCCCCccChhhhcccc--ccCc-ceeeeeEEEEeeccCC-CCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecC
Q 015469 77 DDPFTRFLEPEKFNSLR--SGTQ-GALTGVGLSIGYPTAS-DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTE 151 (406)
Q Consensus 77 ~D~ht~~~~~~~~~~~~--~~~~-~~~~g~g~~~~~~~~~-~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~ 151 (406)
.|+|+.|+++++.+... .... ....++|+.+...... .....+++|..|.++|||+++| |++||+|++|||+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~ 89 (127)
T 1wg6_A 10 GEPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLL 89 (127)
T ss_dssp SCSSSCCSSCCCCEEEEEEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEEST
T ss_pred CCCcccccCCCCCCceEEEEEEeeCCCCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECC
Confidence 47999999987765322 2222 4466788877542110 0001368999999999999999 9999999999999999
Q ss_pred CCCHHHHHHHhCCC------CCCcEEEEEEeCCe
Q 015469 152 SMGIYDAAERLQGP------EGSPVELTVRSGAE 179 (406)
Q Consensus 152 ~~~~~~~~~~l~~~------~g~~v~l~v~r~g~ 179 (406)
++...++..+++.. .++++.|+|.|++.
T Consensus 90 ~~~~~~~~~~l~~~~~~~g~~~~~v~l~v~R~~~ 123 (127)
T 1wg6_A 90 GKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSG 123 (127)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECSC
T ss_pred CCCHHHHHHHHHHhhccccCCCCEEEEEEEeCCC
Confidence 98888898888743 57899999988754
No 23
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=99.10 E-value=4.5e-10 Score=86.09 Aligned_cols=74 Identities=19% Similarity=0.368 Sum_probs=62.4
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
.++|+.+..... ..+++|..|.++|||+++||++||+|++|||+++.++...++..+++.. ++++.+++.|.+.
T Consensus 15 ~g~G~~~~~~~~----~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~~ 88 (90)
T 2he4_A 15 QGYGFNLHSDKS----RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR-EDEARLLVVGPST 88 (90)
T ss_dssp TBCCEEEEECSS----SSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTSCHHHHHHHHTTS-SSEEEEEEECCCC
T ss_pred CCccEEEEccCC----CCCEEEEEECCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCcEEEEEEccCC
Confidence 467887764321 3479999999999999999999999999999999998778898888865 8899999988653
No 24
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=99.10 E-value=1.8e-10 Score=89.63 Aligned_cols=80 Identities=30% Similarity=0.508 Sum_probs=62.2
Q ss_pred eeeeEEEEeeccCC---CCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEe
Q 015469 100 LTGVGLSIGYPTAS---DGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 176 (406)
Q Consensus 100 ~~g~g~~~~~~~~~---~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r 176 (406)
..++|+.+...... .....+++|..|.++|||+++||++||+|++|||+++.++...+....+.. .++++.++|.|
T Consensus 13 ~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R 91 (97)
T 2w4f_A 13 TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRG-AGTAVQMRVWR 91 (97)
T ss_dssp TTBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT-SCSEEEEEEEC
T ss_pred CCceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhC-CCCeEEEEEEe
Confidence 45788887632110 012468999999999999999999999999999999999865555555554 68999999999
Q ss_pred CCee
Q 015469 177 GAEI 180 (406)
Q Consensus 177 ~g~~ 180 (406)
+++.
T Consensus 92 ~g~~ 95 (97)
T 2w4f_A 92 ERET 95 (97)
T ss_dssp CSSC
T ss_pred CCcc
Confidence 8764
No 25
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=2.3e-11 Score=99.60 Aligned_cols=95 Identities=20% Similarity=0.269 Sum_probs=74.3
Q ss_pred CCCCCccChhhhc-cccccCcceeeeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHH
Q 015469 78 DPFTRFLEPEKFN-SLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIY 156 (406)
Q Consensus 78 D~ht~~~~~~~~~-~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~ 156 (406)
|+|+.|++++++. .+.....+.+.|.... . .....+++|..|.++|||+++||++||+|++|||+++..++..
T Consensus 26 ~~~t~y~~~~~~~~~~~~~~~G~~~G~~~~-~-----~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~ 99 (126)
T 2yuy_A 26 RHFIVYPPESAIQFSYKDEENGNRGGKQRN-R-----LEPMDTIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYS 99 (126)
T ss_dssp CCCCCCCCSSCCCSCSSSCCCCSCCCTTSC-C-----CCCCCCCCBCCCCSSSHHHHHTCCSSCCCCEETTEECSSCCHH
T ss_pred cCccccCCHHHHHHHHHhhcCcceeceeee-c-----ccCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHH
Confidence 7999999998886 5655555655541100 0 0113578899999999999999999999999999999977788
Q ss_pred HHHHHhCCCCCCcEEEEEEeCCe
Q 015469 157 DAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 157 ~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
++..+++.. ++++.|+|.|+++
T Consensus 100 ~~~~~l~~~-g~~v~l~v~r~~~ 121 (126)
T 2yuy_A 100 QVIALIQNS-DTTLELSVMPKDS 121 (126)
T ss_dssp HHHHHHHTC-TTEEEEECCCCCC
T ss_pred HHHHHHHcC-CCEEEEEEEECCC
Confidence 998888864 8899999988664
No 26
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=99.08 E-value=4e-10 Score=85.76 Aligned_cols=74 Identities=24% Similarity=0.313 Sum_probs=61.0
Q ss_pred eeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 102 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 102 g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
++|+.+..... ...+++|..|.++|||+++||++||+|++|||+++.+++..++..+++... +++.++|.|+++
T Consensus 13 ~lG~~l~~~~~---~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~~~ 86 (87)
T 2pa1_A 13 PWGFRITGGRD---FHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSP-SPLRLQLDRITS 86 (87)
T ss_dssp CCSEEEEEEGG---GTEEEEEEEECSSSHHHHTTCCTTCEEEEETTEESTTCCHHHHHHHHHTCC-SSEEEEEEECCC
T ss_pred ccCEEEecccC---CCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEecCC
Confidence 56777653210 124789999999999999999999999999999999987789988888665 899999998764
No 27
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=99.07 E-value=1.3e-10 Score=89.39 Aligned_cols=74 Identities=24% Similarity=0.371 Sum_probs=57.8
Q ss_pred eeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCee
Q 015469 102 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEI 180 (406)
Q Consensus 102 g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~~ 180 (406)
++|+.+.... ...+++|..|.++|||+++||++||+|++|||+++..++..++..++... ++++.|+|.|++..
T Consensus 15 ~~G~~l~~~~----~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~~ 88 (91)
T 2vsp_A 15 GYGFHLNAIR----GLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSS-GKNVTLLVCGKKAQ 88 (91)
T ss_dssp BTSCCCBCCT----TCSCCBC-CCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHTTS-CSEEEEEEEC----
T ss_pred cccEEEEecc----CCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEeCCcc
Confidence 4666654321 13478999999999999999999999999999999976678999999876 89999999987654
No 28
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=99.06 E-value=5.6e-10 Score=85.70 Aligned_cols=75 Identities=21% Similarity=0.380 Sum_probs=60.1
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
.++|+.+.... ...+++|..|.++|||+++||++||+|++|||+++.+++..++..+++...++.+.+.++|+++
T Consensus 14 ~g~G~~~~~~~----~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~~r~~~ 88 (91)
T 1g9o_A 14 NGYGFHLHGEK----GKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETD 88 (91)
T ss_dssp TBCCEEEEECT----TCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECCCCS
T ss_pred CcccEEEEecC----CCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEcCCcc
Confidence 36788775432 1358999999999999999999999999999999999888888888887666555556666554
No 29
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=99.06 E-value=1.9e-10 Score=88.12 Aligned_cols=72 Identities=24% Similarity=0.307 Sum_probs=58.2
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCC-CCCCcEEEEEEeCC
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGA 178 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~-~~g~~v~l~v~r~g 178 (406)
.++|+.+... ..+++|..|.++|||+++||++||+|++|||+++...+..++..++.. ..++++.++|.|+|
T Consensus 17 ~~lG~~~~~~------~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g 89 (90)
T 2eaq_A 17 LDFGFTIKWD------IPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRRYG 89 (90)
T ss_dssp SCCSEEEEEE------TTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred CcccEEEEec------CCCEEEEEECCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCEEEEEEEeCC
Confidence 3567766543 458999999999999999999999999999999954446787777764 35788999998876
No 30
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=99.06 E-value=6.1e-10 Score=91.81 Aligned_cols=100 Identities=19% Similarity=0.216 Sum_probs=72.6
Q ss_pred hCCCCCCCccChhhhccccccCcceeeeeEEEEeeccCCC---------CCCCcEEEEEeCCCChhhhcCCCCCCEEEEE
Q 015469 75 TLDDPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTASD---------GSSAGLVVISSMPGGPANRAGILSGDVILAI 145 (406)
Q Consensus 75 ~L~D~ht~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~---------~~~~~~~V~~v~~~spA~~aGl~~GD~I~~I 145 (406)
.+.|+|+.|..+...-.+.. ....++||.+....... ....+++|..|.++|||+++||++||+|++|
T Consensus 16 ~~~~~~s~~~~~~r~v~l~r---~~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aGL~~GD~Il~V 92 (132)
T 3l4f_D 16 VPRGSGSDYIIKEKTVLLQK---KDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEV 92 (132)
T ss_dssp ---CCSCCCCCCCCEEEEEC---CTTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGTCCTTCEEEEE
T ss_pred ccCCCCCCcCCCCEEEEEEE---CCCCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEE
Confidence 35689999887765443322 12246788776542100 0112589999999999999999999999999
Q ss_pred CCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCC
Q 015469 146 DDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 178 (406)
Q Consensus 146 ng~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g 178 (406)
||+++..+...++..+++. .+.++.|+|.+..
T Consensus 93 ng~~v~~~~~~~~~~~l~~-~g~~v~l~v~~~~ 124 (132)
T 3l4f_D 93 NGQNVVKVGHRQVVNMIRQ-GGNTLMVKVVMVT 124 (132)
T ss_dssp SSSBCTTSCHHHHHHHHHH-TTTEEEEEEECCC
T ss_pred CCEECCCCCHHHHHHHHHc-CCCEEEEEEEECC
Confidence 9999998888888888875 6778888887654
No 31
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=99.06 E-value=3.7e-10 Score=91.94 Aligned_cols=99 Identities=20% Similarity=0.353 Sum_probs=65.2
Q ss_pred hCCCCCCCccChhhhccccccCcceeeeeEEEEeeccC------CCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECC
Q 015469 75 TLDDPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTA------SDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDD 147 (406)
Q Consensus 75 ~L~D~ht~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~------~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing 147 (406)
++.|+|+.|+.|........ ...++|+.+..... ......+++|..|.++|||+++| |++||+|++|||
T Consensus 14 ~~~d~~s~~~~p~~v~l~k~----~~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng 89 (123)
T 2iwq_A 14 GTENLYFQSMQPRRVELWRE----PSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDG 89 (123)
T ss_dssp ---------CCCEEEEECCC----TTSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETT
T ss_pred ccccCCcccCCCEEEEEEec----CCCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECC
Confidence 45688999988876553322 12345665532110 00113579999999999999999 999999999999
Q ss_pred EecCCCCHHHHHHHhCCCCCCcEEEEEEeCC
Q 015469 148 TSTESMGIYDAAERLQGPEGSPVELTVRSGA 178 (406)
Q Consensus 148 ~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g 178 (406)
+++.+++..++..+++.. +.++.++|.|..
T Consensus 90 ~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~ 119 (123)
T 2iwq_A 90 MDLRDASHEQAVEAIRKA-GNPVVFMVQSII 119 (123)
T ss_dssp EECTTCCHHHHHHHHHHC-CSSEEEEEECCC
T ss_pred EECCCCCHHHHHHHHHcC-CCeEEEEEEECC
Confidence 999998778888888765 458999988754
No 32
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=99.06 E-value=4.7e-10 Score=87.26 Aligned_cols=75 Identities=29% Similarity=0.426 Sum_probs=62.4
Q ss_pred eeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCee
Q 015469 102 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEI 180 (406)
Q Consensus 102 g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~~ 180 (406)
++|+.+.... ...++++|..|.++|||+++| |++||+|++|||+++.+++..++..+++ ..++++.|+|.|+++.
T Consensus 17 ~lG~~i~~~~---~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~-~~g~~v~l~v~R~~~~ 92 (97)
T 1n7e_A 17 PLGITISGTE---EPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQ-MAGETVTLKIKKQTDA 92 (97)
T ss_dssp CCCEEEECCS---STTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHH-TCCSEEEEEEECCCCC
T ss_pred CcCEEEEccc---CCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEeCCCC
Confidence 4788875431 112579999999999999999 9999999999999999887888888887 5788999999887753
No 33
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=99.04 E-value=6.9e-10 Score=84.62 Aligned_cols=74 Identities=23% Similarity=0.376 Sum_probs=60.0
Q ss_pred eeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 102 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 102 g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
++|+.+..... ...+++|..|.++|||+++||++||+|++|||+++.++...++..+++.. ++++.++|.|++.
T Consensus 14 ~~G~~l~~g~~---~~~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~g~ 87 (88)
T 2uzc_A 14 PWGFRLQGGKD---FNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGC-TGSLNMTLQRESD 87 (88)
T ss_dssp CCCEEEEEEGG---GTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEECCCC
T ss_pred cccEEEECcCC---CCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEeCCC
Confidence 46776643210 13468999999999999999999999999999999998778888888754 8899999988764
No 34
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.04 E-value=2.9e-10 Score=91.90 Aligned_cols=98 Identities=22% Similarity=0.294 Sum_probs=68.6
Q ss_pred CCCCCCccChhhhcc--ccccCcceeeeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhc-CCCCCCEEEEECCEecCCC
Q 015469 77 DDPFTRFLEPEKFNS--LRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRA-GILSGDVILAIDDTSTESM 153 (406)
Q Consensus 77 ~D~ht~~~~~~~~~~--~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~a-Gl~~GD~I~~Ing~~v~~~ 153 (406)
.|||+.|.++ ++.. ..........|+|+.+..... ...+.++|..|.++|||+++ ||++||+|++|||+++..+
T Consensus 3 ~dP~s~~~~~-~~~~~~~~~~~~~~~~glG~~i~gg~~--~~~~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~ 79 (118)
T 1v6b_A 3 EGAATMFSPE-QIAGKDVRLLRIKKEGSLDLALEGGVD--SPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDY 79 (118)
T ss_dssp CCCCSSSCHH-HHSSCCEEEEEEESCSCCCCEEEEBTT--SSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTC
T ss_pred CCCcceeccc-ccCCceEEEEEECCCCccCEEEEcccC--CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCC
Confidence 4899988544 3211 110000112377877753211 11345999999999999999 9999999999999999998
Q ss_pred CHHHHHHHhCCC---CCCcEEEEEEeC
Q 015469 154 GIYDAAERLQGP---EGSPVELTVRSG 177 (406)
Q Consensus 154 ~~~~~~~~l~~~---~g~~v~l~v~r~ 177 (406)
..+++.++++.. .|++++|+|.|.
T Consensus 80 ~~~~~~~~l~~~~~~~g~~v~l~v~r~ 106 (118)
T 1v6b_A 80 TLAEAEAALQKAWNQGGDWIDLVVAVC 106 (118)
T ss_dssp BHHHHHHHHHHHHHHTCSEEEEEEECC
T ss_pred CHHHHHHHHHHhhhcCCCeEEEEEEeC
Confidence 878887777643 378899998774
No 35
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=99.04 E-value=1.1e-09 Score=86.20 Aligned_cols=60 Identities=28% Similarity=0.380 Sum_probs=54.8
Q ss_pred CCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEe
Q 015469 117 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 176 (406)
Q Consensus 117 ~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r 176 (406)
..+++|..|.++|||+++||++||+|++|||+++.+....++...++...|+++.++|.|
T Consensus 44 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R 103 (104)
T 3sfj_A 44 DKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTR 103 (104)
T ss_dssp CCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHTCTTCSEEEEEEEE
T ss_pred CCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEc
Confidence 457999999999999999999999999999999998877889999987788899999876
No 36
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=99.04 E-value=6.7e-10 Score=87.74 Aligned_cols=86 Identities=23% Similarity=0.308 Sum_probs=62.1
Q ss_pred eeeEEEEeeccCC--CCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeC
Q 015469 101 TGVGLSIGYPTAS--DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 177 (406)
Q Consensus 101 ~g~g~~~~~~~~~--~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~ 177 (406)
.++|+.+...... .....+++|..|.++|||+++| |++||+|++|||+++.+....++...++.. ++.+.|+|.|+
T Consensus 14 ~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~ 92 (105)
T 2awx_A 14 KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNT-SDFVYLKVAKP 92 (105)
T ss_dssp TBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHSC-CSEEEEEEECC
T ss_pred CCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEcC
Confidence 3678877532110 0113479999999999999999 999999999999999987777877777654 78999999998
Q ss_pred CeeEEEEEEe
Q 015469 178 AEIRHLALTR 187 (406)
Q Consensus 178 g~~~~~~v~~ 187 (406)
+......+++
T Consensus 93 ~~~~~~~~~p 102 (105)
T 2awx_A 93 TSMYISRHHH 102 (105)
T ss_dssp CC--------
T ss_pred CCCCCccccc
Confidence 8776666544
No 37
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=99.04 E-value=8.5e-10 Score=85.94 Aligned_cols=78 Identities=23% Similarity=0.287 Sum_probs=62.3
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
.++|+.+..... ...++++|..|.++|||+++| |++||+|++|||+++.++...++...++.. ++++.++|.|++.
T Consensus 15 ~~lG~~l~~~~~--~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~~~ 91 (98)
T 2opg_A 15 TGLGLSIVGGSD--TLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQT-PQRVRLTLYRDEA 91 (98)
T ss_dssp TBTCEEEEECTT--STTCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEEECSS
T ss_pred CcccEEEecCCC--CCCCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEcCCC
Confidence 467887764321 111589999999999999999 999999999999999998777888777654 4889999998876
Q ss_pred eE
Q 015469 180 IR 181 (406)
Q Consensus 180 ~~ 181 (406)
..
T Consensus 92 ~~ 93 (98)
T 2opg_A 92 PY 93 (98)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 38
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=99.03 E-value=1.1e-09 Score=85.64 Aligned_cols=70 Identities=20% Similarity=0.302 Sum_probs=60.0
Q ss_pred CCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCC-CCCCcEEEEEEeCCeeEEEEEEeec
Q 015469 117 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAEIRHLALTREK 189 (406)
Q Consensus 117 ~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~-~~g~~v~l~v~r~g~~~~~~v~~~~ 189 (406)
..+++|..|.++|||+. ||++||+|++|||+++.++ .++...+.. ..|+++.+++.|+|+..+++++...
T Consensus 6 ~~Gv~V~~V~~~spA~~-GL~~GD~I~~Ing~~v~~~--~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~ 76 (100)
T 3i18_A 6 YDGVYVMSVKDDVPAAD-VLHAGDLITEIDGNAFKSS--QEFIDYIHSKKVGDTVKINYKHGDKNEQADIKLTA 76 (100)
T ss_dssp CCCEEEEEECTTSGGGG-TCCTTCEEEEETTBCCSSH--HHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECEE
T ss_pred CCCEEEEEeCCCCchHH-CCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEec
Confidence 46899999999999995 9999999999999999985 677777765 4689999999999998888776543
No 39
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.03 E-value=1.5e-10 Score=91.28 Aligned_cols=78 Identities=19% Similarity=0.261 Sum_probs=63.0
Q ss_pred eeeeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCC-CCcEEEEEEe
Q 015469 99 ALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPE-GSPVELTVRS 176 (406)
Q Consensus 99 ~~~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~-g~~v~l~v~r 176 (406)
...++|+.+.... ....+++|..|.++|||+++| |++||+|++|||+++.++...++..+++... ++++.|+|.|
T Consensus 18 ~~~g~G~~i~~g~---~~~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R 94 (103)
T 1uep_A 18 MESGFGFRILGGD---EPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRR 94 (103)
T ss_dssp SSSSCCEEECCCC---STTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred CCCccCEEEeeec---CCCCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCcEEEEEEe
Confidence 4457888875421 013568999999999999999 9999999999999998887888888887543 7899999987
Q ss_pred CCe
Q 015469 177 GAE 179 (406)
Q Consensus 177 ~g~ 179 (406)
++.
T Consensus 95 ~~~ 97 (103)
T 1uep_A 95 KVL 97 (103)
T ss_dssp ECC
T ss_pred CCC
Confidence 653
No 40
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=3e-10 Score=89.56 Aligned_cols=79 Identities=29% Similarity=0.506 Sum_probs=63.0
Q ss_pred eeeeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeC
Q 015469 99 ALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 177 (406)
Q Consensus 99 ~~~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~ 177 (406)
...++|+.+...... ....+++|..|.++|||+++| |++||+|++|||+++.++...++..+++. .++++.|+|.|+
T Consensus 20 ~~~g~G~~l~~~~~~-~~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~ 97 (104)
T 2djt_A 20 GYAGFGLTLGGGRDV-AGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRA-GGPQLHLVIRRP 97 (104)
T ss_dssp CSSSCCEEEECCEET-TEECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHH-TCSEEEEEECCC
T ss_pred CCCCccEEEEeccCC-CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEEC
Confidence 346788888642110 003478999999999999999 99999999999999999877888777765 678999999887
Q ss_pred Ce
Q 015469 178 AE 179 (406)
Q Consensus 178 g~ 179 (406)
++
T Consensus 98 g~ 99 (104)
T 2djt_A 98 LS 99 (104)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 41
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=99.03 E-value=3.6e-10 Score=92.71 Aligned_cols=78 Identities=24% Similarity=0.316 Sum_probs=61.1
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecC-CCCHHHHHHHhCCCCCCcEEEEEEeCC
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTE-SMGIYDAAERLQGPEGSPVELTVRSGA 178 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~-~~~~~~~~~~l~~~~g~~v~l~v~r~g 178 (406)
.++|+.+...........+++|..|.++|||+++| |++||+|++|||+++. .+...++..+++. .+..+.|+|.|+.
T Consensus 37 ~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~-~~~~v~l~v~r~~ 115 (128)
T 2db5_A 37 GGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQ-TTGSLRLIVAREP 115 (128)
T ss_dssp SCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHH-CCSEEEEEEEECC
T ss_pred CccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHc-CCCeEEEEEEcCC
Confidence 46777764321111112379999999999999999 9999999999999997 7778898888876 6788999998864
Q ss_pred e
Q 015469 179 E 179 (406)
Q Consensus 179 ~ 179 (406)
.
T Consensus 116 ~ 116 (128)
T 2db5_A 116 V 116 (128)
T ss_dssp C
T ss_pred C
Confidence 3
No 42
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=99.03 E-value=5.5e-10 Score=86.74 Aligned_cols=72 Identities=18% Similarity=0.266 Sum_probs=58.2
Q ss_pred eeeeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeC
Q 015469 99 ALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 177 (406)
Q Consensus 99 ~~~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~ 177 (406)
...++|+.+... ..+++|..|.++|||+++| |++||+|++|||+++.+....++..+++. .+.++.|+|.|.
T Consensus 18 ~~~glG~~~~~~------~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~ 90 (96)
T 2qkv_A 18 AGKELGLSLSPN------EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKG-ANGKVSMEVTRP 90 (96)
T ss_dssp TTBCCCEEEEEC------SSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHT-CSSEEEEEEECC
T ss_pred CCCCccEEEEeC------CCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCCcEEEEEEeC
Confidence 345678776542 3579999999999999999 99999999999999998766777777765 445788888774
No 43
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=99.03 E-value=1.1e-09 Score=84.91 Aligned_cols=78 Identities=28% Similarity=0.439 Sum_probs=61.9
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
.++|+.+...........+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++. .++++.++|.|++.
T Consensus 16 ~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~ 94 (96)
T 1d5g_A 16 NSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN-TGQVVHLLLEKGQS 94 (96)
T ss_dssp SSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHS-CCSEEEEEEECCSC
T ss_pred CCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEcCCC
Confidence 46777775321111123579999999999999999 99999999999999998877888888875 67889999988654
No 44
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=99.02 E-value=8.3e-10 Score=91.26 Aligned_cols=70 Identities=24% Similarity=0.300 Sum_probs=60.4
Q ss_pred CCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCC-CCCcEEEEEEeCCeeEEEEEEeec
Q 015469 117 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGP-EGSPVELTVRSGAEIRHLALTREK 189 (406)
Q Consensus 117 ~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~-~g~~v~l~v~r~g~~~~~~v~~~~ 189 (406)
..+++|..|.++|||+ +||++||+|++|||+++.++ .++...+... .|++++++|.|+|+..+++++...
T Consensus 56 ~~g~~V~~V~~~spA~-aGL~~GD~I~~inG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~ 126 (134)
T 2l97_A 56 TSGVIVRSVQSNMPAN-GHLEKYDVITKVDDKEIASS--TDLQSALYNHSIGDTIKITYYRNGKEETTSIKLNK 126 (134)
T ss_dssp CSCEEEEECSTTSGGG-TTSCSSCEEEEETTEECCCH--HHHHHHHHHSSTTCEEEEEEEETTEEEEEEEECCC
T ss_pred CCCEEEEEECCCCchH-HCCCCCCEEEEECCEEcCCH--HHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEcc
Confidence 3578999999999999 99999999999999999985 6776666543 689999999999999888887643
No 45
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=99.02 E-value=6.3e-10 Score=85.05 Aligned_cols=75 Identities=23% Similarity=0.365 Sum_probs=59.8
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
.++|+.+..... ...+++|..|.++|||+++||++||+|++|||+++.+++..++..++... ++++.++|.|++.
T Consensus 13 ~~~G~~l~gg~~---~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~~~ 87 (89)
T 2q3g_A 13 APWGFRLQGGKD---FNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRAC-GERLSLGLSRAIT 87 (89)
T ss_dssp SCCCEEEEEEGG---GTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHTC-TTEEEEEEEEECC
T ss_pred CcccEEEECcCC---CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCEEEEEEEeCCC
Confidence 456777643210 13468899999999999999999999999999999988778888777654 7889999988664
No 46
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=99.02 E-value=1.2e-10 Score=94.43 Aligned_cols=80 Identities=26% Similarity=0.359 Sum_probs=61.5
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhc-CCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRA-GILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~a-Gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
.++|+.+...........+++|..|.++|||+++ ||++||+|++|||+++.++...++..+++.. +.+++|+|.|+++
T Consensus 36 ~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~g~ 114 (120)
T 2iwo_A 36 DSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNA-SGSIEMQVVAGGD 114 (120)
T ss_dssp -CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHC-CSEEEEEEECCTT
T ss_pred CCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEECCc
Confidence 4777776532100001236899999999999999 9999999999999999998888888888754 5679999998876
Q ss_pred eE
Q 015469 180 IR 181 (406)
Q Consensus 180 ~~ 181 (406)
..
T Consensus 115 ~~ 116 (120)
T 2iwo_A 115 VS 116 (120)
T ss_dssp SS
T ss_pred cc
Confidence 44
No 47
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.01 E-value=7.8e-10 Score=90.15 Aligned_cols=82 Identities=21% Similarity=0.294 Sum_probs=65.9
Q ss_pred cceeeeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEE
Q 015469 97 QGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVR 175 (406)
Q Consensus 97 ~~~~~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~ 175 (406)
.+.+.++|+.+...... ....+++|..|.++|||+++| |++||+|++|||+++.+ ..++..+++...|+++.|+|.
T Consensus 28 ~~~~~~lG~~~~~~~~~-~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~--~~~~~~~l~~~~g~~v~l~v~ 104 (124)
T 1wh1_A 28 MNSQDKLGLTVCYRTDD-EDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN--REEAVALLTSEENKNFSLLIA 104 (124)
T ss_dssp SSTTCCCCEEEECCCCC-SSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCS--HHHHHHHHTCSSCCSCCEEEE
T ss_pred cCCCCcccEEEEecCCC-CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCEEEEEEE
Confidence 34455788887643211 112579999999999999999 99999999999999997 578888898777899999999
Q ss_pred eCCeeE
Q 015469 176 SGAEIR 181 (406)
Q Consensus 176 r~g~~~ 181 (406)
|+++..
T Consensus 105 R~g~~~ 110 (124)
T 1wh1_A 105 RPELQL 110 (124)
T ss_dssp ECSSCC
T ss_pred ECCEEe
Confidence 988654
No 48
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=99.01 E-value=5.5e-10 Score=86.85 Aligned_cols=79 Identities=27% Similarity=0.362 Sum_probs=62.7
Q ss_pred eeeEEEEeeccCC-CCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCC
Q 015469 101 TGVGLSIGYPTAS-DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 178 (406)
Q Consensus 101 ~g~g~~~~~~~~~-~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g 178 (406)
.++|+.+...... .....+++|..|.++|||+++| |++||+|++|||+++.++...++..+++. .++++.|+|.|++
T Consensus 14 ~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~ 92 (97)
T 2jil_A 14 NTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQ-CGQEAALLIEYDV 92 (97)
T ss_dssp TBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH-SCSEEEEEEEEEC
T ss_pred CccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence 3677776542110 0113478999999999999999 99999999999999999877888888876 7889999998876
Q ss_pred ee
Q 015469 179 EI 180 (406)
Q Consensus 179 ~~ 180 (406)
..
T Consensus 93 ~~ 94 (97)
T 2jil_A 93 SE 94 (97)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 49
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=99.01 E-value=6.8e-10 Score=86.49 Aligned_cols=78 Identities=18% Similarity=0.337 Sum_probs=60.3
Q ss_pred eeeEEEEeeccCCC---CCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEe
Q 015469 101 TGVGLSIGYPTASD---GSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 176 (406)
Q Consensus 101 ~g~g~~~~~~~~~~---~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r 176 (406)
.++|+.+....... ....+++|..|.++|||+++| |++||+|++|||+++.++...++..++.. .++++.|+|.|
T Consensus 17 ~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R 95 (98)
T 1ihj_A 17 KSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKE-ADFKIELEIQT 95 (98)
T ss_dssp SSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHH-SCSEEEEEEEE
T ss_pred CCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCCeEEEEEEe
Confidence 36777764321100 012378999999999999999 99999999999999999877888887775 78899999998
Q ss_pred CCe
Q 015469 177 GAE 179 (406)
Q Consensus 177 ~g~ 179 (406)
+++
T Consensus 96 ~g~ 98 (98)
T 1ihj_A 96 FDK 98 (98)
T ss_dssp C--
T ss_pred CCC
Confidence 763
No 50
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=99.01 E-value=5.7e-10 Score=85.17 Aligned_cols=73 Identities=18% Similarity=0.278 Sum_probs=61.0
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhh-cCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANR-AGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~-aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
.++|+.+... ..++++|..|.++|||++ +||++||+|++|||+++..++.+++.++++...+ ++.|++.|.+.
T Consensus 13 ~~lG~~i~~~-----~~~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~r~~~ 86 (88)
T 1kwa_A 13 EPMGITLKMN-----ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRG-SITFKIVPSYR 86 (88)
T ss_dssp SCCCEEEECS-----CGGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCE-EEEEEEECCCC
T ss_pred CceeEEEEeC-----CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCC-cEEEEEECCcC
Confidence 4578877642 135799999999999999 8899999999999999997778999999987666 88888887654
No 51
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=99.01 E-value=1.3e-10 Score=89.38 Aligned_cols=69 Identities=22% Similarity=0.319 Sum_probs=59.4
Q ss_pred cEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCC-CCCcEEEEEEeCCeeEEEEEEeecc
Q 015469 119 GLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGP-EGSPVELTVRSGAEIRHLALTREKV 190 (406)
Q Consensus 119 ~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~-~g~~v~l~v~r~g~~~~~~v~~~~~ 190 (406)
+++|..|.++|||++ ||++||+|++|||+++.++ .++..++... +|+++.++|.|+|+..++++++...
T Consensus 2 Gv~V~~V~~~spA~~-GL~~GD~I~~InG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~ 71 (91)
T 2kjp_A 2 GIYASSVVENMPAKG-KIEVGDKIISADGKNYQSA--EKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQF 71 (91)
T ss_dssp CSSCCCCCCSSCCSS-CCCSSCEEEEETTBCCSSH--HHHHHHHSSCCSSCEECEEEESSSCEECCCEECCCC
T ss_pred ceEEEEECCCChHHH-cCCCCCEEEEECCEECCCH--HHHHHHHHcCCCCCEEEEEEEECCEEEEEEEEEecc
Confidence 467888999999999 9999999999999999984 7888888765 6999999999999988877766443
No 52
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=99.00 E-value=6.4e-10 Score=83.33 Aligned_cols=65 Identities=22% Similarity=0.301 Sum_probs=56.9
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEe
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 176 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r 176 (406)
.++||.+. .+ .|..+.++|||+++||++||+|++|||+++..++.+++.++++ ..|++++|+|.+
T Consensus 16 g~~Gf~i~--------~g--~I~~v~~gspA~~aGl~~GD~Il~VNG~~v~~~~~~evv~llr-~~g~~V~L~v~p 80 (82)
T 1r6j_A 16 GHVGFIFK--------NG--KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILS-TSGTVVTITIMP 80 (82)
T ss_dssp SCCCEEEE--------TT--EEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEEEE
T ss_pred CCeEEEEE--------CC--EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHh-cCCCEEEEEEEe
Confidence 45788874 22 4789999999999999999999999999999999999999999 788899998854
No 53
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=99.00 E-value=1.4e-09 Score=83.86 Aligned_cols=70 Identities=26% Similarity=0.442 Sum_probs=59.2
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
.++|+.+.. +.+++|..|.++|||+++||++||+|++|||+++.++...++...++ .++++.|+|.|++.
T Consensus 19 ~~~G~~l~~-------~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~--~g~~v~l~v~R~~~ 88 (93)
T 2dls_A 19 HGFGFTVSG-------DRIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIK--SGAYVALTLLGSSS 88 (93)
T ss_dssp SSCCEEEEC-------SSSCEEEEECSSSTTTTTTCCSSCEEEEETTEECSSSCHHHHHHHHT--SSSEEEEEEECCCC
T ss_pred CceeEEEeC-------CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhc--CCCEEEEEEEECCC
Confidence 467877753 34789999999999999999999999999999999987677777776 58999999988653
No 54
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=99.00 E-value=1.3e-09 Score=83.75 Aligned_cols=71 Identities=25% Similarity=0.367 Sum_probs=58.5
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
.++|+.+.. ..+++|..|.++|||+++||++||+|++|||+++.+++..++..+++. .+.++.++|.|++.
T Consensus 14 ~g~G~~l~~-------~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~ 84 (91)
T 2f5y_A 14 DGFGFTICC-------DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRS-CPSEIILLVWRMVP 84 (91)
T ss_dssp TBTSEEEEC-------SSSCEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT-CSSEEEEEEEECC-
T ss_pred CCccEEEec-------CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Confidence 356777643 246899999999999999999999999999999999877888888875 45678999988764
No 55
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=99.00 E-value=1e-09 Score=83.62 Aligned_cols=73 Identities=23% Similarity=0.436 Sum_probs=56.8
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhC-CCCCCcEEEEEEeCCe
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQ-GPEGSPVELTVRSGAE 179 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~-~~~g~~v~l~v~r~g~ 179 (406)
.++|+.+.... ...+++|..+ ++|||+ +||++||+|++|||+++.++...++...++ .+.|+++.++|.|+++
T Consensus 14 ~g~G~~~~~~~----~~~~~~v~~v-~~spA~-aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~ 87 (88)
T 3bpu_A 14 MGFGFTIADSP----GGGGQRVKQI-VDSPRS-RGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQTR 87 (88)
T ss_dssp TBSSCEEEECT----TSSSEEEEEC-CC--CC-TTCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEEECC
T ss_pred CceeEEEEecC----CCCcEEEEEe-cCChhH-hCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCCEEEEEEEeCCc
Confidence 46787776431 1346777776 999999 999999999999999999987788888876 4578899999988764
No 56
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.99 E-value=3.9e-10 Score=92.62 Aligned_cols=80 Identities=28% Similarity=0.387 Sum_probs=64.9
Q ss_pred eeeeEEEEeeccCCC--CCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEe
Q 015469 100 LTGVGLSIGYPTASD--GSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 176 (406)
Q Consensus 100 ~~g~g~~~~~~~~~~--~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r 176 (406)
..++|+.+....... ....+++|..|.++|||+++| |++||+|++|||+++.++...++..+++. .++.+.|+|.|
T Consensus 26 ~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R 104 (129)
T 2dmz_A 26 GQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRN-AGQVVHLTLVR 104 (129)
T ss_dssp TCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHH-CCSSEEEEEEE
T ss_pred CCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEe
Confidence 456788775421110 124579999999999999999 99999999999999999888899888887 78999999998
Q ss_pred CCee
Q 015469 177 GAEI 180 (406)
Q Consensus 177 ~g~~ 180 (406)
+++.
T Consensus 105 ~~~~ 108 (129)
T 2dmz_A 105 RKTS 108 (129)
T ss_dssp ESSS
T ss_pred CCcc
Confidence 7754
No 57
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=98.99 E-value=3.7e-09 Score=83.59 Aligned_cols=62 Identities=24% Similarity=0.381 Sum_probs=54.6
Q ss_pred CCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 117 SAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 117 ~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
..+++|..|.++|||+++| |++||+|++|||+++.++...++..+++. .+.++.++|.|+++
T Consensus 31 ~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~ 93 (106)
T 4amh_A 31 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKN-TSDFVYLKVAKPGS 93 (106)
T ss_dssp BCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHS-CCSEEEEEEECCSS
T ss_pred CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhC-CCCeEEEEEEeCCC
Confidence 3479999999999999999 99999999999999998877888888865 46699999998764
No 58
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=98.99 E-value=7.7e-10 Score=85.87 Aligned_cols=80 Identities=28% Similarity=0.373 Sum_probs=62.6
Q ss_pred eeeeeEEEEeeccCC-CCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEe
Q 015469 99 ALTGVGLSIGYPTAS-DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 176 (406)
Q Consensus 99 ~~~g~g~~~~~~~~~-~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r 176 (406)
...++|+.+...... .....+++|..|.++|||+++| |++||+|++|||+++.++...++..+++. .+.++.|+|.|
T Consensus 13 ~~~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r 91 (97)
T 2iwn_A 13 NVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRH-TGQTVLLTLMR 91 (97)
T ss_dssp BTTBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHT-CCSEEEEEEEE
T ss_pred CCCCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEe
Confidence 345688887643110 0124579999999999999999 99999999999999999877888877765 78899999987
Q ss_pred CCe
Q 015469 177 GAE 179 (406)
Q Consensus 177 ~g~ 179 (406)
+++
T Consensus 92 ~g~ 94 (97)
T 2iwn_A 92 RGE 94 (97)
T ss_dssp EEE
T ss_pred CCC
Confidence 654
No 59
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=98.98 E-value=1.5e-09 Score=84.05 Aligned_cols=74 Identities=26% Similarity=0.367 Sum_probs=59.9
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
.++|+.+..... ..+++|..|.++|||+++| |++||+|++|||+++.+....++...+.. .++++.+++.|+++
T Consensus 16 ~~lG~~~~~~~~----~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~ 90 (95)
T 2vwr_A 16 EQLGIKLVRRTD----EPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQA-SGERVNLTIARPGK 90 (95)
T ss_dssp CCCCEEEEECSS----SCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHH-CCSEEEEEEEEESC
T ss_pred CcccEEEEeccC----CCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEcCCc
Confidence 357777653321 3579999999999999999 99999999999999998877777776653 57899999988664
No 60
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=98.98 E-value=8.8e-10 Score=85.22 Aligned_cols=70 Identities=23% Similarity=0.315 Sum_probs=60.1
Q ss_pred CCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCC-CCCcEEEEEEeCCeeEEEEEEeec
Q 015469 117 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGP-EGSPVELTVRSGAEIRHLALTREK 189 (406)
Q Consensus 117 ~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~-~g~~v~l~v~r~g~~~~~~v~~~~ 189 (406)
..+++|..|.++|||++ ||++||+|++|||+++.++ .++..++... .|+++.++|.|+|+..+++++...
T Consensus 4 ~~Gv~V~~V~~~spA~~-GL~~GD~Il~InG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~ 74 (94)
T 2kl1_A 4 AKGVYVMSVLPNMPAAG-RLEAGDRIAAIDGQPINTS--EQIVSYVREKQAGDRVRVTFIRDRKQHEAELVLKP 74 (94)
T ss_dssp CCCEECCCCCTTSTTBT-TBCTTCEEEEETTBCCCCH--HHHHHHHHHSCTTCCEEEEEEETTEEEEEEECCCB
T ss_pred CCcEEEEEECCCChHHh-CCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEee
Confidence 45789999999999999 9999999999999999884 6777777654 689999999999998888876543
No 61
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=98.98 E-value=2.1e-09 Score=81.34 Aligned_cols=73 Identities=25% Similarity=0.336 Sum_probs=58.5
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCC-CCCcEEEEEEe
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGP-EGSPVELTVRS 176 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~-~g~~v~l~v~r 176 (406)
.|+|+.+..... ...+++|..|.++|||+++| |++||+|++|||+++.+++..++.++++.. .++++.+++.|
T Consensus 11 ~g~G~~i~~~~~---~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R 85 (85)
T 2i04_A 11 RGFGFTVVGGDE---PDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR 85 (85)
T ss_dssp TBSSEEEEECCS---TTBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEEEEEEC
T ss_pred CCCCEEEEcccC---CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEC
Confidence 367777754211 13358999999999999999 999999999999999988778888888764 47888888764
No 62
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=98.98 E-value=2.4e-10 Score=93.59 Aligned_cols=86 Identities=23% Similarity=0.370 Sum_probs=71.4
Q ss_pred ceeeeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCC-CCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEe
Q 015469 98 GALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGI-LSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 176 (406)
Q Consensus 98 ~~~~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl-~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r 176 (406)
+.+.++|+.+.... ...+++|..|.++|||+++|| ++||+|++|||+++.++...++..+++...|+.+.+++.|
T Consensus 17 ~~~~glG~~~~~~~----~~~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R 92 (127)
T 1b8q_A 17 RKVGGLGFLVKERV----SKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILR 92 (127)
T ss_dssp TTTSCCSCCEEECT----TSSCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSCCSSCEEEEEEC
T ss_pred CCCCcEeEEEEecC----CCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEe
Confidence 34457787776431 124799999999999999998 9999999999999999777899998887778999999999
Q ss_pred CCeeEEEEEEe
Q 015469 177 GAEIRHLALTR 187 (406)
Q Consensus 177 ~g~~~~~~v~~ 187 (406)
+++..++++..
T Consensus 93 ~g~~~~~~~~~ 103 (127)
T 1b8q_A 93 GPEGFTTHLET 103 (127)
T ss_dssp CCCSEEECCCC
T ss_pred CCceEEEEEEE
Confidence 99887776653
No 63
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=98.98 E-value=1.7e-09 Score=85.93 Aligned_cols=71 Identities=21% Similarity=0.195 Sum_probs=58.7
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCC
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 178 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g 178 (406)
.++|+.+.. ..+++|..|.++|||+++||++||+|++|||+++..++..++.++++...++++.++|.|..
T Consensus 34 ~~~G~~l~~-------~~~v~V~~V~~gspA~~AGL~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~~v~l~V~~~~ 104 (109)
T 2vsv_A 34 GDLGFTLRG-------NAPVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSLL 104 (109)
T ss_dssp GCCCEEEES-------SSSCEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEEEEEESCC
T ss_pred CceeEEEeC-------CCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEECC
Confidence 356776642 23678999999999999999999999999999999887789988888766667899887643
No 64
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.98 E-value=3e-10 Score=90.54 Aligned_cols=81 Identities=22% Similarity=0.394 Sum_probs=64.0
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
.++|+.+...........+++|..|.++|||+++| |++||+|++|||+++.+....++...++. .++.+.|+|.|++.
T Consensus 19 ~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~~ 97 (110)
T 1um1_A 19 SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRH-GGKKMRFLVAKSDV 97 (110)
T ss_dssp TCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHT-CCSEEEEEEECCCH
T ss_pred CccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCc
Confidence 46788875422111123579999999999999999 99999999999999998777888877765 47899999999876
Q ss_pred eEE
Q 015469 180 IRH 182 (406)
Q Consensus 180 ~~~ 182 (406)
..+
T Consensus 98 ~~~ 100 (110)
T 1um1_A 98 ETA 100 (110)
T ss_dssp HHH
T ss_pred cee
Confidence 543
No 65
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=98.98 E-value=1.4e-09 Score=83.64 Aligned_cols=66 Identities=27% Similarity=0.385 Sum_probs=51.0
Q ss_pred cEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCeeEEEEE
Q 015469 119 GLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLAL 185 (406)
Q Consensus 119 ~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~~~~~~v 185 (406)
+++|..|.++|||+++| |++||+|++|||+++..++..++..++... +.++.+++.|+++..++++
T Consensus 24 gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~g~~~~~~v 90 (92)
T 3cyy_A 24 HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERS-KGKLKMVVQRDERATLLNV 90 (92)
T ss_dssp EEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTT-TTEEEEEEEC---------
T ss_pred CEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCcEEEEEEeCCceeeeeC
Confidence 78999999999999999 999999999999999966678888888764 3589999999887766554
No 66
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=98.98 E-value=3.4e-10 Score=93.12 Aligned_cols=79 Identities=19% Similarity=0.339 Sum_probs=64.0
Q ss_pred eeeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhc-CCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCC
Q 015469 100 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRA-GILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 178 (406)
Q Consensus 100 ~~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~a-Gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g 178 (406)
..|+||.+...........+++|..|.++|||+++ ||++||+|++|||+++..+..+++..+++...+..+.++|+|++
T Consensus 39 ~~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~ 118 (130)
T 1i16_A 39 SAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKS 118 (130)
T ss_dssp SSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEES
T ss_pred CCccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEeCC
Confidence 45788888643110001346999999999999999 99999999999999999988899999998877778999987754
No 67
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.98 E-value=1e-09 Score=86.06 Aligned_cols=76 Identities=29% Similarity=0.410 Sum_probs=60.1
Q ss_pred eeeeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCC
Q 015469 99 ALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 178 (406)
Q Consensus 99 ~~~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g 178 (406)
...++|+.+..... ...+++|..|.++|||+++||++||+|++|||+++.++...++...++ .+.++.++|.|++
T Consensus 19 ~~~~lG~~~~~~~~---~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~--~~~~v~l~v~R~g 93 (101)
T 1uez_A 19 AHEGLGFSIRGGSE---HGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALK--GSKKLVLSVYSAG 93 (101)
T ss_dssp TTTCSSEEEEECTT---TTCCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCCHHHHHHHSS--SSSSCCEEECCCC
T ss_pred CCCcccEEEeCCCC---CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHhhc--CCCeEEEEEEECC
Confidence 44578888864311 134799999999999999999999999999999999987666666664 3567889998876
Q ss_pred e
Q 015469 179 E 179 (406)
Q Consensus 179 ~ 179 (406)
+
T Consensus 94 ~ 94 (101)
T 1uez_A 94 R 94 (101)
T ss_dssp C
T ss_pred c
Confidence 5
No 68
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=98.98 E-value=4.4e-10 Score=88.97 Aligned_cols=62 Identities=27% Similarity=0.444 Sum_probs=54.8
Q ss_pred CCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 117 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 117 ~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
..+++|..|.++|||+++||++||+|++|||+++.++...++..+++ ..++++.+++.|+++
T Consensus 25 ~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r~~~ 86 (106)
T 3ngh_A 25 TDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVR-KSGNSVTLLVLDGDS 86 (106)
T ss_dssp CCSCEEECCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHH-HTTTEEEEEEECHHH
T ss_pred CCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH-hCCCEEEEEEEECCe
Confidence 34789999999999999999999999999999999987778888887 467899999988654
No 69
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.97 E-value=1.6e-09 Score=86.18 Aligned_cols=78 Identities=22% Similarity=0.363 Sum_probs=63.6
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCC---CCcEEEEEEe
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPE---GSPVELTVRS 176 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~---g~~v~l~v~r 176 (406)
.++|+.+.-..... ...+++|..|.++|||+++| |++||+|++|||+++..++.+++.++++... +.++++++.|
T Consensus 25 ~glG~~i~gg~~~~-~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~r~~~~~~l~v~R 103 (109)
T 1wi4_A 25 TGLGLKILGGINRN-EGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIR 103 (109)
T ss_dssp SCCCEEEEECSSSS-SCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEEEC
T ss_pred CccCEEEEeccCCC-CCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHccccCCCceEEEEEEe
Confidence 57888876321100 12369999999999999999 9999999999999999988899999998766 7889999988
Q ss_pred CCe
Q 015469 177 GAE 179 (406)
Q Consensus 177 ~g~ 179 (406)
++.
T Consensus 104 ~~~ 106 (109)
T 1wi4_A 104 SGP 106 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 70
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=98.96 E-value=1.6e-09 Score=85.74 Aligned_cols=79 Identities=32% Similarity=0.435 Sum_probs=62.1
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
.++|+.+...........+++|..|.++|||+++| |++||+|++|||+++.+.+..++...++. .++++.++|.|++.
T Consensus 21 ~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~ 99 (106)
T 3axa_A 21 NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTR-TSSVVTLEVAKQGA 99 (106)
T ss_dssp SSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT-CCSEEEEEEECCCS
T ss_pred CccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCc
Confidence 46777764311111124579999999999999999 99999999999999998777888877765 68899999988765
Q ss_pred e
Q 015469 180 I 180 (406)
Q Consensus 180 ~ 180 (406)
.
T Consensus 100 ~ 100 (106)
T 3axa_A 100 I 100 (106)
T ss_dssp S
T ss_pred c
Confidence 3
No 71
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=98.96 E-value=3e-09 Score=81.57 Aligned_cols=71 Identities=18% Similarity=0.339 Sum_probs=56.9
Q ss_pred eeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeC
Q 015469 102 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 177 (406)
Q Consensus 102 g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~ 177 (406)
++|+.+.... ...+++|..|.++|||+++||++||+|++|||+++.++...++..++.. .++++.++|.|+
T Consensus 20 ~~G~~~~~~~----~~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~ 90 (91)
T 1m5z_A 20 DFGFSVADGL----LEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAE-SGNKLDLVISRN 90 (91)
T ss_dssp SSSEEEEECT----TSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT-STTEEEEEEEEC
T ss_pred CccEEEEecc----CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEeC
Confidence 5677665431 1357999999999999999999999999999999999876666666653 578889988775
No 72
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=98.95 E-value=1.7e-09 Score=83.72 Aligned_cols=73 Identities=23% Similarity=0.417 Sum_probs=57.8
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCC
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 178 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g 178 (406)
.++|+.+..... ..+++|..|.++|||+++||++||+|++|||+++.+++..++..+++. .+..+.+.+.|.+
T Consensus 16 ~~~G~~l~~~~~----~~~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~~~~~~~~r~~ 88 (95)
T 3r68_A 16 NGYGFYLRAGPE----QKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRK-GGDQTTLLVLDKE 88 (95)
T ss_dssp TBCSCEEEEC------CCSEEEECCCTTSHHHHHTCCTTEEEEEETTEECTTCCHHHHHHHHHT-TTTEEEEEEEECC
T ss_pred CcccEEEEecCC----CCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEECCc
Confidence 367777754311 237999999999999999999999999999999999888899888886 4556666665543
No 73
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=98.95 E-value=2.1e-09 Score=81.25 Aligned_cols=73 Identities=21% Similarity=0.357 Sum_probs=58.3
Q ss_pred eeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCC
Q 015469 102 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 178 (406)
Q Consensus 102 g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g 178 (406)
++|+.+..... ...+++|..|.++|||+++||++||+|++|||+++.++...++...+.. .+.++.+++.|++
T Consensus 12 ~~G~~l~gg~~---~~~~v~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~ 84 (85)
T 1rgw_A 12 PWGFRLQGGKD---FNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKS-ASYNLSLTLQKSK 84 (85)
T ss_dssp CCCEEECCCGG---GTSCCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHHTT-CSSCEEEEEESCC
T ss_pred ccCEEEEeccC---CCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence 56777642110 1236899999999999999999999999999999999877888887765 3567999998875
No 74
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.95 E-value=2.7e-10 Score=89.26 Aligned_cols=74 Identities=24% Similarity=0.344 Sum_probs=59.0
Q ss_pred ceeeeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeC
Q 015469 98 GALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 177 (406)
Q Consensus 98 ~~~~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~ 177 (406)
....++|+.+.. ..+++|..|.++|||+++||++||+|++|||+++..++..++..+++.. +.++.|+|.|+
T Consensus 23 ~~~~g~G~~~~~-------~~~~~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~ 94 (100)
T 1whd_A 23 RGKDGFGFTICC-------DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSC-PSEIILLVWRV 94 (100)
T ss_dssp CCSSSSSCBCCC-------SSSCBCCBCCTTSHHHHHTCCSSCEEEEETTEECTTCCHHHHHHHHHHC-SSEEEEEEEEC
T ss_pred CCCCeeeEEEeC-------CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 344566765532 2468899999999999999999999999999999988788888888754 44588988876
Q ss_pred Ce
Q 015469 178 AE 179 (406)
Q Consensus 178 g~ 179 (406)
+.
T Consensus 95 ~~ 96 (100)
T 1whd_A 95 SG 96 (100)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 75
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=98.95 E-value=1.2e-09 Score=84.41 Aligned_cols=69 Identities=23% Similarity=0.251 Sum_probs=56.8
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCC--CCCCcEEEEEE
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG--PEGSPVELTVR 175 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~--~~g~~v~l~v~ 175 (406)
.++|+.+... +.+.+|..|.++|||+++||++||+|++|||+++...+.+++...+.. +.|.++.|.|.
T Consensus 28 ~g~G~~l~~~------~~~~~I~~V~~gSpA~~AGL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~LLV~ 98 (101)
T 3qik_A 28 EDYGFDIEEK------NKAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRLLVA 98 (101)
T ss_dssp SSSSEEEEEE------TTEEEEEEECTTSHHHHHTCCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CcccEEEEcc------CCCeEEEEECCCCHHHHcCCCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEEEEe
Confidence 3567777654 457899999999999999999999999999999964446888888875 46888888874
No 76
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=98.95 E-value=9.4e-10 Score=84.43 Aligned_cols=67 Identities=19% Similarity=0.274 Sum_probs=57.2
Q ss_pred cEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCeeEEEEEEe
Q 015469 119 GLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLALTR 187 (406)
Q Consensus 119 ~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~~~~~~v~~ 187 (406)
.++|..|.++|||+++||++||+|++|||+++.++ .++...+....|+++.+++.|+|+..+++++.
T Consensus 5 ~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~~~g~~v~l~v~R~g~~~~~~v~~ 71 (91)
T 2zpm_A 5 EPVLENVQPNSAASXAGLQAGDRIVXVDGQPLTQW--VTFVMLVRDNPGXSLALEIERQGSPLSLTLIP 71 (91)
T ss_dssp -CBCSEECTTSHHHHTTCCTTCEEEEETTEECCCH--HHHHHHHHHCTTCCEEEEEEETTEEEEEEECC
T ss_pred CeEEEEECCCChHHhcCCCCCCEEEEECCeEcCCH--HHHHHHHhcCCCCeEEEEEEECCeEEEEEEEE
Confidence 35688899999999999999999999999999985 67777776567889999999999887777654
No 77
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.94 E-value=1.6e-09 Score=82.49 Aligned_cols=66 Identities=17% Similarity=0.175 Sum_probs=54.0
Q ss_pred cEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCC-CCCCcEEEEEEeCCeeEEEEEE
Q 015469 119 GLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAEIRHLALT 186 (406)
Q Consensus 119 ~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~-~~g~~v~l~v~r~g~~~~~~v~ 186 (406)
++.|..+.|+|||+++||++||+|++|||+++.++ .++...+.. ..++++.+++.|+|+..+++++
T Consensus 20 G~~V~~~~~~s~A~~aGl~~GD~I~~ing~~v~~~--~d~~~~~~~~~~g~~v~l~v~R~g~~~~~~v~ 86 (87)
T 2i6v_A 20 GYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDP--NVMNTLFQSMNEMTEMSLTVERDGQQHDVYIQ 86 (87)
T ss_dssp EEEEEECSCHHHHHHTTCCTTCEEEEETTEETTCH--HHHHHHHHTGGGCSEEEEEEEETTEEEEEEEE
T ss_pred EEEEEeCCCCCHHHHCCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEE
Confidence 45677777888889999999999999999999985 666666654 3578999999999987776653
No 78
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=98.94 E-value=2.6e-09 Score=91.64 Aligned_cols=82 Identities=21% Similarity=0.307 Sum_probs=65.5
Q ss_pred eeeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 100 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 100 ~~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
..++|+.+... ..+++|..|.++|||+++||++||+|++|||+++.++.......+++...++++.++++|+++
T Consensus 15 ~~~lG~~~~~~------~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~~v~l~vr~~~~ 88 (166)
T 1w9e_A 15 DGKIGLRLKSI------DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPF 88 (166)
T ss_dssp TSCCSEEEEEE------TTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECCTT
T ss_pred CCcEeEEEEeC------CCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEcCCC
Confidence 34677776544 468999999999999999999999999999999999864345566666677899999965557
Q ss_pred eEEEEEEe
Q 015469 180 IRHLALTR 187 (406)
Q Consensus 180 ~~~~~v~~ 187 (406)
..++++.+
T Consensus 89 ~~~v~l~~ 96 (166)
T 1w9e_A 89 ERTITMHK 96 (166)
T ss_dssp CEEEEEEC
T ss_pred cEEEEEec
Confidence 77777764
No 79
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=98.94 E-value=2.6e-09 Score=83.61 Aligned_cols=78 Identities=26% Similarity=0.393 Sum_probs=61.7
Q ss_pred eeeEEEEeeccCCC--CCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeC
Q 015469 101 TGVGLSIGYPTASD--GSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 177 (406)
Q Consensus 101 ~g~g~~~~~~~~~~--~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~ 177 (406)
.++|+.+....... ....+++|..|.++|||+++| |++||+|++|||+++.++...++..+++. .++.+.|+|.|+
T Consensus 18 ~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~ 96 (101)
T 2jik_A 18 SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRN-AGYAVSLRVQHR 96 (101)
T ss_dssp TCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHT-CCSEEEEEEEEE
T ss_pred CCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEeC
Confidence 57888876421100 013579999999999999999 99999999999999999877888877765 478899999876
Q ss_pred Ce
Q 015469 178 AE 179 (406)
Q Consensus 178 g~ 179 (406)
+.
T Consensus 97 ~~ 98 (101)
T 2jik_A 97 LE 98 (101)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 80
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=98.94 E-value=1.5e-09 Score=87.52 Aligned_cols=79 Identities=28% Similarity=0.329 Sum_probs=60.8
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
.++|+.+...........+++|..|.++|||+++| |++||+|++|||+++.+.+..++...++.. +.++.|+|.|+++
T Consensus 36 ~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~g~ 114 (117)
T 2fne_A 36 DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRT-KGTVTLMVLSSDE 114 (117)
T ss_dssp TBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHC-CSSEEEEEEECSC
T ss_pred CcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCCc
Confidence 46777775321000012368999999999999999 999999999999999987778888888754 4469999998876
Q ss_pred e
Q 015469 180 I 180 (406)
Q Consensus 180 ~ 180 (406)
.
T Consensus 115 ~ 115 (117)
T 2fne_A 115 T 115 (117)
T ss_dssp E
T ss_pred c
Confidence 4
No 81
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=98.94 E-value=1.8e-09 Score=87.98 Aligned_cols=74 Identities=23% Similarity=0.396 Sum_probs=60.6
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCC-CCCCcEEEEEEeCCe
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAE 179 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~-~~g~~v~l~v~r~g~ 179 (406)
.++|+.+.... +.+++|..|.++|||+++||++||+|++|||+++.++...++...+.. ..|+++.|+|.|+++
T Consensus 39 ~~lG~~l~~~~-----~~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~ 113 (124)
T 3tsv_A 39 DSVGLRLAGGN-----DVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKD 113 (124)
T ss_dssp SCCCEEEEECT-----TSCEEEEEECTTCHHHHTTCCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEEEEECHH
T ss_pred CceeEEEecCC-----CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECCc
Confidence 35677765321 358999999999999999999999999999999999877788776653 678899999988754
No 82
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.94 E-value=2e-09 Score=83.55 Aligned_cols=74 Identities=20% Similarity=0.364 Sum_probs=61.3
Q ss_pred ceeeeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCC-CCCcEEEEEEe
Q 015469 98 GALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGP-EGSPVELTVRS 176 (406)
Q Consensus 98 ~~~~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~-~g~~v~l~v~r 176 (406)
....|+|+.+... ..+++|..|.+ +|+++||++||+|++|||+++.++...++.++++.. .++++.|+|.|
T Consensus 18 ~~~~g~G~~i~~~------~~Gv~V~~v~~--~a~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R 89 (96)
T 1ujv_A 18 KGAQGFGFTIADS------PTGQRVKQILD--IQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHR 89 (96)
T ss_dssp CCSSSSSEEEEEE------TTEEEEEEESC--GGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEEC
T ss_pred eCCCceeEEEEcC------CCCEEEEEEec--ccccCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEE
Confidence 3456788888533 34789999998 378899999999999999999998888999988875 48999999998
Q ss_pred CCe
Q 015469 177 GAE 179 (406)
Q Consensus 177 ~g~ 179 (406)
+++
T Consensus 90 ~g~ 92 (96)
T 1ujv_A 90 GSG 92 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 765
No 83
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.94 E-value=9.2e-10 Score=89.63 Aligned_cols=74 Identities=19% Similarity=0.300 Sum_probs=62.1
Q ss_pred ceeeeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCC-CCCCcEEEEEE
Q 015469 98 GALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVR 175 (406)
Q Consensus 98 ~~~~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~-~~g~~v~l~v~ 175 (406)
+.+.++|+.+... ...++|..|.++|||+++| |++||+|++|||+++...+..++..+++. +.|+++.|+|.
T Consensus 35 k~~~glG~~i~~~------~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~v~l~V~ 108 (126)
T 1wif_A 35 VGNLGLGLVVIQN------GPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAY 108 (126)
T ss_dssp CCTTCCCCCEEEE------TTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEE
T ss_pred cCCceEeEEEEcC------CCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEE
Confidence 3445777766543 3578899999999999999 99999999999999986667899999987 56899999998
Q ss_pred eC
Q 015469 176 SG 177 (406)
Q Consensus 176 r~ 177 (406)
|+
T Consensus 109 R~ 110 (126)
T 1wif_A 109 RG 110 (126)
T ss_dssp SS
T ss_pred EC
Confidence 86
No 84
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=98.94 E-value=1.6e-09 Score=84.15 Aligned_cols=71 Identities=20% Similarity=0.332 Sum_probs=57.6
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeC
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 177 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~ 177 (406)
.++|+.+.... +++++|..|.++|||+++| |++||+|++|||+++.+++.+++.++++.. +.++.|+|.+.
T Consensus 24 ~~lG~~l~~~~-----~~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~-~~~v~L~V~~~ 95 (97)
T 2ejy_A 24 EPMGICLKLNE-----KQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKET-KGMISLKVIPN 95 (97)
T ss_dssp SCCSEEEEECT-----TCCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHC-CEEEEEEEECC
T ss_pred CCeeEEEEeCC-----CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 35677776431 3589999999999999999 999999999999999986668888888754 56778877643
No 85
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.94 E-value=1.2e-09 Score=85.85 Aligned_cols=74 Identities=23% Similarity=0.412 Sum_probs=60.8
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
.++|+.+.... ...+++|..|.++|||+++||++||+|++|||+++.++...++...++. .++++.+++.|++.
T Consensus 17 ~g~G~~l~~~~----~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~~~ 90 (102)
T 2d90_A 17 NGYGFYLRAGP----EQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRK-GGDQTTLLVLDKEA 90 (102)
T ss_dssp SSSSCEEEECS----SSSSEEEECCCTTSTTTTTTCCTTCEEEEESSCBCTTSCHHHHHHHHHH-STTEEEEEECSTTC
T ss_pred CCccEEEEeec----CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEECCC
Confidence 46777776431 1357999999999999999999999999999999999877788877765 47899999977654
No 86
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=98.93 E-value=2.9e-09 Score=82.18 Aligned_cols=76 Identities=24% Similarity=0.374 Sum_probs=59.1
Q ss_pred eeEEEEeeccC--CCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCC
Q 015469 102 GVGLSIGYPTA--SDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 178 (406)
Q Consensus 102 g~g~~~~~~~~--~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g 178 (406)
++|+.+..... ......+++|..|.++|||+++| |++||+|++|||+++.++...++..+++.. +.++.++|.|++
T Consensus 15 g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~g 93 (94)
T 2fe5_A 15 GLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNT-SDMVYLKVAKPG 93 (94)
T ss_dssp CSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTC-CSEEEEEEECCC
T ss_pred CCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEcCC
Confidence 57777753110 01123479999999999999999 999999999999999998777887777654 458899998875
No 87
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=98.93 E-value=1.9e-09 Score=83.54 Aligned_cols=69 Identities=20% Similarity=0.123 Sum_probs=55.8
Q ss_pred EEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCC-CCcEEEEEEeCC--eeEEEEEEeecc
Q 015469 120 LVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPE-GSPVELTVRSGA--EIRHLALTREKV 190 (406)
Q Consensus 120 ~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~-g~~v~l~v~r~g--~~~~~~v~~~~~ 190 (406)
.+|..|.++|||+++||++||+|++|||+++.++ .++...+.... ++.+.++|.|++ ..+++++....+
T Consensus 4 p~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~d~~~~l~~~~~~~~v~l~v~R~g~~~~~~~~l~l~~~ 75 (95)
T 3id1_A 4 PVVGEIAANSIAAEAQIAPGTELKAVDGIETPDW--DAVRLQLVDKIGDESTTITVAPFGSDQRRDVKLDLRHW 75 (95)
T ss_dssp CBEEEECTTSHHHHTTCCTTCEEEEETTEECSSH--HHHHHHHHHTTTCSEEEEEEECTTCCCCEEEEEECTTC
T ss_pred CEEEeeCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHHhcCCCcEEEEEEECCCCceEEEEEEcccc
Confidence 4688999999999999999999999999999985 67777665443 478999999986 456666655444
No 88
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=98.92 E-value=3.7e-09 Score=84.56 Aligned_cols=69 Identities=33% Similarity=0.512 Sum_probs=59.6
Q ss_pred CCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCeeEEEEEEeec
Q 015469 117 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLALTREK 189 (406)
Q Consensus 117 ~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~~~~~~v~~~~ 189 (406)
..+++|..|.++|||+++||++||+|++|||+++.+ ..++...+.. ++.+.+++.|+++..++++++..
T Consensus 34 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~--~~~~~~~l~~--~~~v~l~v~R~g~~~~~~v~~~~ 102 (113)
T 2pzd_A 34 QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN--AEDVYEAVRT--QSQLAVQIRRGRETLTLYVTPEV 102 (113)
T ss_dssp SSCEEEEEEBTTSHHHHHTCCTTCEEEEETTEECCS--HHHHHHHHHH--CSSEEEEEEETTEEEEEEECCEE
T ss_pred CCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCC--HHHHHHHHhC--CCeEEEEEEECCEEEEEEEEEee
Confidence 457899999999999999999999999999999987 4777777764 68899999999998888776543
No 89
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=98.92 E-value=4.6e-10 Score=89.92 Aligned_cols=81 Identities=25% Similarity=0.290 Sum_probs=62.5
Q ss_pred eeeEEEEee---ccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEe
Q 015469 101 TGVGLSIGY---PTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 176 (406)
Q Consensus 101 ~g~g~~~~~---~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r 176 (406)
.++|+.+.. .........+++|..|.++|||+++| |++||+|++|||+++.++...++...++. .++++.++|.|
T Consensus 15 ~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R 93 (113)
T 2g5m_B 15 EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN-TKGRVRFMIGR 93 (113)
T ss_dssp SCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHH-SCSSCEEEEEE
T ss_pred CCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCCeEEEEEEe
Confidence 456766654 11111124579999999999999999 99999999999999998777777777765 47899999999
Q ss_pred CCeeEE
Q 015469 177 GAEIRH 182 (406)
Q Consensus 177 ~g~~~~ 182 (406)
++...+
T Consensus 94 ~~~~~~ 99 (113)
T 2g5m_B 94 ERPGEQ 99 (113)
T ss_dssp CCCCTT
T ss_pred CCCCCc
Confidence 876543
No 90
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.92 E-value=2.1e-09 Score=86.11 Aligned_cols=72 Identities=14% Similarity=0.316 Sum_probs=60.6
Q ss_pred eeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCC-CCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCee
Q 015469 102 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGI-LSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEI 180 (406)
Q Consensus 102 g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl-~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~~ 180 (406)
++|+.+... ..+++|..|.++|||+++|| ++||+|++|||+++..+...++..+++... .++.|+|.|+++.
T Consensus 38 ~lG~~i~~~------~~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~~~~ 110 (113)
T 1va8_A 38 PLGATVRNE------MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMH-GTLTFVLIPSSGP 110 (113)
T ss_dssp CCCEEEEEC------SSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-EEEEEEEECCCCC
T ss_pred ceeEEEEeC------CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEECCcc
Confidence 678877543 45899999999999999999 999999999999999877888888886543 5788888887653
No 91
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=98.92 E-value=2.7e-10 Score=93.43 Aligned_cols=85 Identities=18% Similarity=0.237 Sum_probs=68.9
Q ss_pred eeeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 100 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 100 ~~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
..++|+.+.... ...+++|..|.++|||+++||++||+|++|||+++.+++..++..++....++.+.+++.|+++
T Consensus 19 ~~g~G~~l~~~~----~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~g~ 94 (128)
T 2kjd_A 19 PSGYGFNLHSDK----SKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETD 94 (128)
T ss_dssp SSSCCEEEEECS----SSCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEEEECHHHH
T ss_pred CCcccEEEEecC----CCCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEeCCc
Confidence 356888876542 1347999999999999999999999999999999999777899888887777888899998876
Q ss_pred eEE--EEEEee
Q 015469 180 IRH--LALTRE 188 (406)
Q Consensus 180 ~~~--~~v~~~ 188 (406)
..+ +++.+.
T Consensus 95 ~~~~~~~l~~~ 105 (128)
T 2kjd_A 95 EFFKKCRVIPS 105 (128)
T ss_dssp HHHHHHTCCCC
T ss_pred ceEEEEEEEec
Confidence 554 444443
No 92
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=98.92 E-value=2.8e-09 Score=87.43 Aligned_cols=74 Identities=26% Similarity=0.362 Sum_probs=60.3
Q ss_pred eeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCC-CCcEEEEEEeCC
Q 015469 102 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPE-GSPVELTVRSGA 178 (406)
Q Consensus 102 g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~-g~~v~l~v~r~g 178 (406)
++|+.+..... ...+++|..|.++|||+++| |++||+|++|||+++.+++..++.++++... |+.+.|+|.|+.
T Consensus 30 g~G~~i~g~~~---~~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~ 105 (129)
T 2kpk_A 30 GFGFTVVGGDE---PDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGY 105 (129)
T ss_dssp CCSEEEEEEEE---TTEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTEEEEEEEEECS
T ss_pred cccEEEeCccC---CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCC
Confidence 67777653210 12358999999999999999 9999999999999999887888888887654 788999998865
No 93
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.91 E-value=2.6e-09 Score=86.10 Aligned_cols=79 Identities=19% Similarity=0.347 Sum_probs=62.2
Q ss_pred eeeEEEEeeccCC--CCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeC
Q 015469 101 TGVGLSIGYPTAS--DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 177 (406)
Q Consensus 101 ~g~g~~~~~~~~~--~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~ 177 (406)
.++||.+...... .....+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++. .+..+.|+|.|+
T Consensus 30 ~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~ 108 (117)
T 1ujd_A 30 NGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQ-QSGEAEICVRLD 108 (117)
T ss_dssp CSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSC-CSSCEEEEEESS
T ss_pred CcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc-CCCEEEEEEEEC
Confidence 4677776432110 0011268999999999999999 99999999999999999888889988886 678899999987
Q ss_pred Cee
Q 015469 178 AEI 180 (406)
Q Consensus 178 g~~ 180 (406)
+..
T Consensus 109 ~~~ 111 (117)
T 1ujd_A 109 LNM 111 (117)
T ss_dssp CCC
T ss_pred Ccc
Confidence 653
No 94
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=98.91 E-value=3.8e-10 Score=91.05 Aligned_cols=63 Identities=27% Similarity=0.363 Sum_probs=55.4
Q ss_pred CcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecC-CCCHHHHHHHhCCCCCCcEEEEEEeCCeeE
Q 015469 118 AGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTE-SMGIYDAAERLQGPEGSPVELTVRSGAEIR 181 (406)
Q Consensus 118 ~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~-~~~~~~~~~~l~~~~g~~v~l~v~r~g~~~ 181 (406)
.+++|..|.++|||+++| |++||+|++|||+++. ..+..++..+++. .++.+.|+|.|+++..
T Consensus 49 ~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~~ 113 (117)
T 2o2t_A 49 LGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQK-AKDTVQLVIARGSLPQ 113 (117)
T ss_dssp EEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHH-CCSEEEEEEESSCCGG
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHc-CCCEEEEEEEeCCcce
Confidence 479999999999999999 9999999999999998 6667888888865 6789999999887643
No 95
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=98.91 E-value=3.4e-09 Score=81.44 Aligned_cols=73 Identities=27% Similarity=0.363 Sum_probs=59.0
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCC
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 178 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g 178 (406)
.++|+.+.... ...+++|..|.++|||+++| |++||+|++|||+++.+....++..+++. .+.++.++|.|.+
T Consensus 16 ~~lG~~~~~~~----~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~ 89 (92)
T 2qg1_A 16 KGLGLSIVGKR----NDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKC-SLGTVTLEVGRIS 89 (92)
T ss_dssp SCCSEEEECCS----SSCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHH-CCSEEEEEEECCC
T ss_pred CcccEEEEecc----CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEccc
Confidence 46777775431 13579999999999999999 99999999999999998777777777764 4678999998765
No 96
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=98.91 E-value=1.7e-09 Score=84.88 Aligned_cols=79 Identities=25% Similarity=0.405 Sum_probs=62.2
Q ss_pred eeeEEEEeeccCC--CCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeC
Q 015469 101 TGVGLSIGYPTAS--DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 177 (406)
Q Consensus 101 ~g~g~~~~~~~~~--~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~ 177 (406)
.++|+.+...... .....+++|..|.++|||+++| |++||+|++|||+++.+....++...++. .++++.|+|.|+
T Consensus 15 ~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~ 93 (102)
T 2i1n_A 15 SGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKE-AGPVVRLVVRRR 93 (102)
T ss_dssp TBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH-SCSEEEEEEEEE
T ss_pred CcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence 4678877542110 0113589999999999999999 99999999999999998877788777765 578999999887
Q ss_pred Cee
Q 015469 178 AEI 180 (406)
Q Consensus 178 g~~ 180 (406)
+..
T Consensus 94 ~~~ 96 (102)
T 2i1n_A 94 QPP 96 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 97
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=98.90 E-value=4e-09 Score=83.69 Aligned_cols=78 Identities=29% Similarity=0.425 Sum_probs=61.4
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCC--CCCcEEEEEEeC
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGP--EGSPVELTVRSG 177 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~--~g~~v~l~v~r~ 177 (406)
.++|+.+..... .....+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++.. .+..+.|+|.|.
T Consensus 17 ~~lG~~i~g~~~-~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~v~l~v~R~ 95 (108)
T 3cbz_A 17 NFLGISIVGQSN-ERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKS 95 (108)
T ss_dssp CCCCEEEEEECS-STTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTSSSCEEEEEECC
T ss_pred CccCEEEEcCcC-CCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccCCCeEEEEEEeC
Confidence 456777653211 1124579999999999999999 999999999999999998888998888754 345699999876
Q ss_pred Ce
Q 015469 178 AE 179 (406)
Q Consensus 178 g~ 179 (406)
+.
T Consensus 96 ~~ 97 (108)
T 3cbz_A 96 GG 97 (108)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 98
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.90 E-value=3.9e-09 Score=82.52 Aligned_cols=73 Identities=27% Similarity=0.361 Sum_probs=60.2
Q ss_pred eeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 102 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 102 g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
.+|+.+..... ...+++|..|.++|||+++||++||+|++|||+++.++...++...++. ++++.|+|.|+++
T Consensus 23 ~lG~~~~~~~~---~~~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~--~~~v~l~v~R~g~ 95 (100)
T 2eeh_A 23 RLGFSVRGGSE---HGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTS--SSRLHMMVRRMGS 95 (100)
T ss_dssp SCSEEEECCTT---TTCCEEEEEECTTSHHHHHTCCSSCEEEEETTEECSSCCHHHHHHHHHS--CSSEEEEEEECSC
T ss_pred CccEEEEcccc---CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhcC--CCEEEEEEEECCc
Confidence 46777653311 1357999999999999999999999999999999999877788877764 7899999999875
No 99
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.90 E-value=1.3e-09 Score=87.96 Aligned_cols=78 Identities=17% Similarity=0.307 Sum_probs=62.9
Q ss_pred eeEEEEeeccCCCCCCCcEEEEEeCC--CChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 102 GVGLSIGYPTASDGSSAGLVVISSMP--GGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 102 g~g~~~~~~~~~~~~~~~~~V~~v~~--~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
|+++.+.... .....+++|..|.+ +|||+++||++||+|++|||+++.++...++...+... ++++.++|.|+++
T Consensus 30 G~~v~l~~~~--~~~~~gv~V~~V~~~~~spA~~aGL~~GD~Il~Vng~~v~~~~~~dl~~~l~~~-g~~v~l~v~R~g~ 106 (118)
T 2yub_A 30 GFSVTVESAS--SNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQT-SQTLQLLIEHDPV 106 (118)
T ss_dssp SSEEEEECTT--SSSCCEEEEEECCTTTSCTTHHHHCCTTCCEEEESSSBTTTSCHHHHHHHHHCC-SSCEEEEEEECSS
T ss_pred eEEEEecccc--ccCCCcEEEEEecCCCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHhC-CCEEEEEEEECCE
Confidence 5666643211 11245799999999 99999999999999999999999998778888888876 8899999999887
Q ss_pred eEE
Q 015469 180 IRH 182 (406)
Q Consensus 180 ~~~ 182 (406)
..+
T Consensus 107 ~~~ 109 (118)
T 2yub_A 107 PQR 109 (118)
T ss_dssp CCC
T ss_pred EEe
Confidence 543
No 100
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.90 E-value=1.3e-09 Score=84.19 Aligned_cols=62 Identities=26% Similarity=0.407 Sum_probs=55.4
Q ss_pred CcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCee
Q 015469 118 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEI 180 (406)
Q Consensus 118 ~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~~ 180 (406)
.+++|..|.++|||+++||++||+|++|||+++.++...++..+++... +++.++|.|+++.
T Consensus 30 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~g~~ 91 (94)
T 1vb7_A 30 TPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSA-SPLRLQLDRSSGP 91 (94)
T ss_dssp EEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SSEEEEEECCCCC
T ss_pred CCeEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CcEEEEEEECCcC
Confidence 4689999999999999999999999999999999987788888887654 8899999998764
No 101
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.90 E-value=2.7e-09 Score=82.41 Aligned_cols=74 Identities=31% Similarity=0.360 Sum_probs=59.1
Q ss_pred eeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 102 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 102 g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
++|+.+.... ....+++|..|.++|||+++||++||+|++|||+++.++...++..++.. .++++.++|.|+++
T Consensus 19 ~~G~~l~gg~---~~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~g~ 92 (94)
T 2eeg_A 19 PWGFRLVGGR---DFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKG-CHDHLTLSVSSGPS 92 (94)
T ss_dssp CCSCCEECCT---TTTSCCEECCCCSSSHHHHTTCCTTCEEEEETTEETTTCCHHHHHHHHHT-CCSCEEEEEECCSS
T ss_pred ccCEEEECcc---CCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Confidence 4666664311 01346899999999999999999999999999999999877777777765 67889999988764
No 102
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.89 E-value=5.6e-09 Score=84.91 Aligned_cols=76 Identities=29% Similarity=0.371 Sum_probs=62.6
Q ss_pred eeeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCC-CCCcEEEEEEeC
Q 015469 100 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGP-EGSPVELTVRSG 177 (406)
Q Consensus 100 ~~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~-~g~~v~l~v~r~ 177 (406)
..++|+.+.... ....+++|..|.++|||+++| |++||+|++|||+++..++..++.++++.. .++++.|+|.|+
T Consensus 29 ~~glG~~~~~g~---~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 105 (123)
T 1ueq_A 29 NMGFGFTIIGGD---EPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRG 105 (123)
T ss_dssp TTSCSEEEECCS---SSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEES
T ss_pred CCceeEEEeccc---CCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeC
Confidence 347888875321 113469999999999999999 999999999999999988788998888765 488999999887
Q ss_pred C
Q 015469 178 A 178 (406)
Q Consensus 178 g 178 (406)
+
T Consensus 106 ~ 106 (123)
T 1ueq_A 106 Y 106 (123)
T ss_dssp C
T ss_pred C
Confidence 5
No 103
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=98.89 E-value=4.6e-09 Score=80.91 Aligned_cols=72 Identities=22% Similarity=0.413 Sum_probs=58.9
Q ss_pred eeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCC
Q 015469 102 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 178 (406)
Q Consensus 102 g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g 178 (406)
++|+.+.... ...+++|..|.++|||+++| |++||+|++|||+++...+..++..+++...+ ++.++|.+..
T Consensus 16 ~lG~~i~~~~----~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~~~~ 88 (93)
T 3o46_A 16 PLGATIKKDE----QTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQG-AITFKIIPGS 88 (93)
T ss_dssp CCCEEEEECT----TTCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCE-EEEEEEECC-
T ss_pred CccEEEEecC----CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC-eEEEEEEeCC
Confidence 6788775431 14579999999999999999 99999999999999988778899999876554 8888887643
No 104
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.88 E-value=7.2e-10 Score=87.23 Aligned_cols=66 Identities=24% Similarity=0.374 Sum_probs=56.3
Q ss_pred cEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCeeEEEEE
Q 015469 119 GLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLAL 185 (406)
Q Consensus 119 ~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~~~~~~v 185 (406)
+++|..|.++|||+++||++||+|++|||+++.++...++...+.. .++++.++|.|+++..++++
T Consensus 30 ~v~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~g~~~~~~v 95 (103)
T 1wf7_A 30 PLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKA-CTGSLNMTLQRASAAAKSEP 95 (103)
T ss_dssp EEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHH-CSSEEEEEECCCSCCCCCCC
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCCcCCCCC
Confidence 5789999999999999999999999999999999876777776654 37789999999887655444
No 105
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=98.88 E-value=4.9e-09 Score=82.09 Aligned_cols=76 Identities=21% Similarity=0.325 Sum_probs=58.7
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhh-cCCCCCCEEEEECCEecCCCCHHHHHHHhCCC-CCCcEEEEEEeC
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANR-AGILSGDVILAIDDTSTESMGIYDAAERLQGP-EGSPVELTVRSG 177 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~-aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~-~g~~v~l~v~r~ 177 (406)
.++|+.+...... ....+++|..|.++|||++ +||++||+|++|||+++...+..++.++++.. .+++++|+|.|.
T Consensus 21 ~~lG~~i~~~~~~-~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 98 (101)
T 2yt7_A 21 EGLGVALVESGWG-SLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHC 98 (101)
T ss_dssp CCCCEEEEECCCS-SSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred CccCEEEEeCCCC-CCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeC
Confidence 3678877532100 0011589999999999999 56999999999999999776678999988764 678899988763
No 106
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=98.88 E-value=6.3e-09 Score=83.09 Aligned_cols=68 Identities=28% Similarity=0.481 Sum_probs=58.4
Q ss_pred CCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCeeEEEEEEee
Q 015469 117 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLALTRE 188 (406)
Q Consensus 117 ~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~~~~~~v~~~ 188 (406)
..+++|..|.++|||+++||++||+|++|||+++.++ .++...+. .++++.+++.|+++..++++++.
T Consensus 34 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~--~g~~v~l~v~R~g~~~~~~v~~~ 101 (112)
T 2p3w_A 34 SSGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDS--SELQEAVL--TESPLLLEVRRGNDDLLFSIAPE 101 (112)
T ss_dssp CSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHH--HCSSEEEEEEETTEEEEEEECCE
T ss_pred CCCeEEEEECCCChHHHCCCCCCCEEEEECCEECCCH--HHHHHHHh--CCCeEEEEEEECCEEEEEEEEEe
Confidence 4579999999999999999999999999999999884 67776663 57899999999998887777543
No 107
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.88 E-value=4.2e-09 Score=84.83 Aligned_cols=75 Identities=19% Similarity=0.252 Sum_probs=59.6
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCee
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEI 180 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~~ 180 (406)
.++|+.+.... +.+++|..|.++|||+++||++||+|++|||+++.++...+....+. ..++++.++|.|+++.
T Consensus 30 ~~lG~~~~~~~-----~~gv~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~r~~~~ 103 (117)
T 1uit_A 30 EPLGISIVSGE-----KGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIG-QQCDTITILAQYNPHV 103 (117)
T ss_dssp CCCCEEEEECT-----TSCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCHHHHHHHTT-SCCSEEEEEECCCSCC
T ss_pred CCccEEEEccC-----CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEECCch
Confidence 35677665431 35899999999999999999999999999999999986555554443 5688999999988765
Q ss_pred E
Q 015469 181 R 181 (406)
Q Consensus 181 ~ 181 (406)
.
T Consensus 104 ~ 104 (117)
T 1uit_A 104 H 104 (117)
T ss_dssp C
T ss_pred h
Confidence 4
No 108
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=98.88 E-value=1.1e-08 Score=90.74 Aligned_cols=103 Identities=17% Similarity=0.147 Sum_probs=74.4
Q ss_pred CCCCCCCccChhhhccccccCcceeeeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCC--
Q 015469 76 LDDPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTES-- 152 (406)
Q Consensus 76 L~D~ht~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~-- 152 (406)
..|||+.++.+.+.....-. ....++|+.+...... ....+++|..|.++|||+++| |++||+|++|||+++.+
T Consensus 6 ~~dp~~~~~~~~~~~~v~~~--~~~~~lG~~i~~g~~~-~~~~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~ 82 (206)
T 3r0h_A 6 PQEPATAEIKPNKKILIELK--VEKKPMGVIVCGGKNN-HVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGS 82 (206)
T ss_dssp --CTTTCCCCTTSCEEEEEE--CTTSCCCEEEECCSSS-SCCSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGG
T ss_pred CCCCCcCCCCCCCEEEEEEE--eCCCCcCEEEecccCC-CCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCc
Confidence 46899999888765432221 1235788877532111 112478999999999999998 99999999999999999
Q ss_pred CCHHHHHHHhCCCCCCcEEEEEEeCCeeE
Q 015469 153 MGIYDAAERLQGPEGSPVELTVRSGAEIR 181 (406)
Q Consensus 153 ~~~~~~~~~l~~~~g~~v~l~v~r~g~~~ 181 (406)
+...++..+++...+.++.|+|.|++...
T Consensus 83 ~~~~~~~~~~~~~~~~~v~l~v~R~~~~~ 111 (206)
T 3r0h_A 83 MTTLKVHQLFHTTYEKAVTLTVFRADPPE 111 (206)
T ss_dssp SCHHHHHHHHHSCCSSEEEEEEECCSSCC
T ss_pred cCHHHHHHHHHhcCCCceEEEEEecccCC
Confidence 66777777777554445999999876543
No 109
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=98.88 E-value=1.5e-09 Score=105.86 Aligned_cols=151 Identities=17% Similarity=0.265 Sum_probs=100.2
Q ss_pred cchhhHHHHHHHHHHHHhccccc-cCCcchHHHHHhhhhcCCCCCHHHHHHHHHHHHHhCCCCCCCccChhhhccccccC
Q 015469 18 LSEENRLFLEAWRTIDRAYVDKT-FNGQSWFRYRENALRNEPMNTREETYMAIRKMLATLDDPFTRFLEPEKFNSLRSGT 96 (406)
Q Consensus 18 ~~~~~~~f~~~w~~i~~~y~~~~-~~~~dW~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~D~ht~~~~~~~~~~~~~~~ 96 (406)
...-.+.+.++|+...+.|.... +..-+| .+.-|..+..+...++|+.+.+..++..+......
T Consensus 148 a~~i~~ti~qaf~~~y~~~l~~~gi~~~~~---------------~~~~y~~~~~~~~~~~d~~~~~~~~~~~~~V~i~k 212 (388)
T 3suz_A 148 AQLIAQSIGQAFSVAYQEFLRANGINPEDL---------------SQKEYSDIINTQEMYNDDLIHFSNSENCKELQLEK 212 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCTTTS---------------CHHHHHHHHHHHHHHHHHHHHTCCSSCCEEEEECC
T ss_pred HHHHHHHHHHHHHHHhhhhccccCcCcccc---------------chhhhcccccccccccchhhhhcccccceEEEEEC
Confidence 33344577899999888887632 323333 13445667777777777777777776655432211
Q ss_pred cceeeeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCC-CCCcEEEEE
Q 015469 97 QGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGP-EGSPVELTV 174 (406)
Q Consensus 97 ~~~~~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~-~g~~v~l~v 174 (406)
. .-.++|+.+..... -....+++|..|.++|||+++| |++||+|++|||+++.++...++..+++.. .+.++.+++
T Consensus 213 ~-~ge~lG~~i~~~~~-g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~~~v~l~v 290 (388)
T 3suz_A 213 H-KGEILGVVVVESGW-GSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNI 290 (388)
T ss_dssp C-SSCCCCCCCBCC----CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTCTTCSCEEEEE
T ss_pred C-CCCceeEEEEecCC-CCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhccCCCcccccc
Confidence 1 11345655533210 0001247899999999999999 999999999999999998777888888765 567799999
Q ss_pred EeCCeeEEEEE
Q 015469 175 RSGAEIRHLAL 185 (406)
Q Consensus 175 ~r~g~~~~~~v 185 (406)
.|++...++++
T Consensus 291 ~r~~~~~~v~l 301 (388)
T 3suz_A 291 VSCPPVTTVLI 301 (388)
T ss_dssp EECCSCC----
T ss_pred ccccccceeeE
Confidence 98877665554
No 110
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=98.88 E-value=1.7e-09 Score=81.46 Aligned_cols=69 Identities=23% Similarity=0.410 Sum_probs=56.8
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeC
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 177 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~ 177 (406)
.++|+.+.. ..+++|..|.++|||+++||++||+|++|||+++.++...++..++... +.++.++|.|+
T Consensus 13 ~g~G~~~~~-------~~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~ 81 (83)
T 2kv8_A 13 AGYGFTLSG-------QAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKC-SGVLHMVIAEG 81 (83)
T ss_dssp SCCSCBCCC-------SSSCBCCBCCTTSTTTTTTCCTTCEEEEETTEECSSCCHHHHHHHHTTC-SSCEEEEEECC
T ss_pred CcccEEEEc-------CCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEcC
Confidence 456665532 2368899999999999999999999999999999998878888888653 56788988875
No 111
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.88 E-value=3.1e-09 Score=84.36 Aligned_cols=77 Identities=27% Similarity=0.429 Sum_probs=61.2
Q ss_pred eeeEEEEeeccCC-CCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeC
Q 015469 101 TGVGLSIGYPTAS-DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 177 (406)
Q Consensus 101 ~g~g~~~~~~~~~-~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~ 177 (406)
.++|+.+...... .....+++|..|.++|||+++| |++||+|++|||+++..++..++..+++...+.++.|+|.|.
T Consensus 26 ~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~R~ 104 (108)
T 2d92_A 26 KGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSG 104 (108)
T ss_dssp SCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSCSEEEEEEEECC
T ss_pred CccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcC
Confidence 4788877532110 1123579999999999999999 999999999999999988888999999876666888888764
No 112
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.87 E-value=4.6e-09 Score=82.87 Aligned_cols=77 Identities=29% Similarity=0.420 Sum_probs=61.2
Q ss_pred eeeEEEEeeccCC---CCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEe
Q 015469 101 TGVGLSIGYPTAS---DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 176 (406)
Q Consensus 101 ~g~g~~~~~~~~~---~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r 176 (406)
.++||.+...... .....+++|..|.++|||+++| |++||+|++|||+++.++...++..+++.. ++.+.|+|.|
T Consensus 18 ~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~-g~~v~l~v~R 96 (105)
T 1wha_A 18 RGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAA-SPTIALLLER 96 (105)
T ss_dssp TCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSC-CSCEEEEEEE
T ss_pred CccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEE
Confidence 3577777532110 0113579999999999999999 999999999999999998788888888754 7889999988
Q ss_pred CC
Q 015469 177 GA 178 (406)
Q Consensus 177 ~g 178 (406)
++
T Consensus 97 ~~ 98 (105)
T 1wha_A 97 EA 98 (105)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 113
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.87 E-value=4.8e-09 Score=82.63 Aligned_cols=74 Identities=26% Similarity=0.410 Sum_probs=60.4
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
.++|+.+.... ....+++|..|.++|||+++||++||+|++|||+++.+....++..+++. ++++.|+|+|+..
T Consensus 27 ~~lG~~~~~~~---~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~--~~~v~l~v~r~~~ 100 (104)
T 1wi2_A 27 AQLGFNIRGGK---ASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKT--AREISMRVRFFSG 100 (104)
T ss_dssp CCCSEEEECCS---SSCCCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHH--SSSEEEEEECCCC
T ss_pred CCccEEEEccc---CCCCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CCEEEEEEEECCC
Confidence 46777775421 11347999999999999999999999999999999999877888888875 7889999987643
No 114
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=98.87 E-value=3.7e-09 Score=82.43 Aligned_cols=60 Identities=30% Similarity=0.372 Sum_probs=53.8
Q ss_pred cEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 119 GLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 119 ~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
+++|..|.++|||+++||++||+|++|||+++.+++..++...++ ..|+++.+++.|+++
T Consensus 35 g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r~~~ 94 (99)
T 3khf_A 35 HHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLL-KSGNKISLRTTALEN 94 (99)
T ss_dssp EEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEEECSCS
T ss_pred CeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHh-cCCCEEEEEEEECCC
Confidence 568999999999999999999999999999999877788888887 578999999998765
No 115
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=98.87 E-value=6.4e-09 Score=82.64 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=50.7
Q ss_pred cEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEe
Q 015469 119 GLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 176 (406)
Q Consensus 119 ~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r 176 (406)
+++|..|.++|||+++||++||+|++|||+++.++...++..+++.. ++++.++|.|
T Consensus 46 gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~~ 102 (109)
T 1q3o_A 46 LQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQG-GNTLMVKVVM 102 (109)
T ss_dssp SEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHT-TTEEEEEEEE
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCEEEEEEEE
Confidence 68999999999999999999999999999999998878888888753 6788888865
No 116
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=2.2e-09 Score=83.95 Aligned_cols=73 Identities=21% Similarity=0.201 Sum_probs=57.2
Q ss_pred eeEEEEeeccCCCCCCCcEEEEEeCCCChhhhc-CCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 102 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRA-GILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 102 g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~a-Gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
++|+.+..... ...+++|..|.++|||+++ ||++||+|++|||+++.++ ..++..+++. .++.+.|+|.|+++
T Consensus 22 ~~G~~~~gg~~---~~~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~-~~~~~~~~~~-~~~~v~l~v~R~~~ 95 (100)
T 2edp_A 22 PWGFTLKGGLE---HCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKG-SFRILKLIVRRRNS 95 (100)
T ss_dssp CCCCCEEEEGG---GTEEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC-SHHHHHHHHT-CCSSCEEEEEECCC
T ss_pred CcCEEEeccCC---CCCCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch-HHHHHHHHHh-CCCeEEEEEEeCCC
Confidence 56666543110 1235889999999999999 9999999999999999986 5677777765 36889999998765
No 117
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.87 E-value=3.7e-09 Score=85.87 Aligned_cols=81 Identities=23% Similarity=0.342 Sum_probs=64.1
Q ss_pred eeeeeEEEEeeccC-CCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCC-CCcEEEEEE
Q 015469 99 ALTGVGLSIGYPTA-SDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPE-GSPVELTVR 175 (406)
Q Consensus 99 ~~~g~g~~~~~~~~-~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~-g~~v~l~v~ 175 (406)
...++|+.+..... .......++|..|.++|||+++| |++||+|++|||+++.+.+..++.++++... ++++.|+|.
T Consensus 25 ~~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~ 104 (122)
T 1v5q_A 25 PVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIE 104 (122)
T ss_dssp SSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEEEE
T ss_pred CCCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEE
Confidence 35678888864210 00113468999999999999999 9999999999999999877788888887654 889999998
Q ss_pred eCCe
Q 015469 176 SGAE 179 (406)
Q Consensus 176 r~g~ 179 (406)
|++.
T Consensus 105 R~~~ 108 (122)
T 1v5q_A 105 FDVA 108 (122)
T ss_dssp EECC
T ss_pred ECCc
Confidence 8765
No 118
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=98.86 E-value=4.3e-09 Score=86.58 Aligned_cols=61 Identities=16% Similarity=0.212 Sum_probs=54.6
Q ss_pred cEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCC-CCCcEEEEEEeCCe
Q 015469 119 GLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGP-EGSPVELTVRSGAE 179 (406)
Q Consensus 119 ~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~-~g~~v~l~v~r~g~ 179 (406)
+++|..|.++|||+++| |++||+|++|||+++.+....++..+++.. .++.+.|+|.|++.
T Consensus 66 gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~ 128 (131)
T 1wfg_A 66 CAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSGP 128 (131)
T ss_dssp EEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEEECS
T ss_pred CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEcCCC
Confidence 78999999999999999 999999999999999988788888888764 67899999987653
No 119
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=98.85 E-value=9.5e-09 Score=80.79 Aligned_cols=73 Identities=26% Similarity=0.436 Sum_probs=59.0
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCC
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 178 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g 178 (406)
.++|+.+..... ..+++|..|.++|||+++| |++||+|++|||+++.++...++...+.. .++++.+++.|++
T Consensus 22 ~glG~~~~~~~~----~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~~ 95 (104)
T 3i4w_A 22 TGLGFNIVGGEX----GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN-AGQTVTIIAQYKP 95 (104)
T ss_dssp TBTSEEEEECC-----CCCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHT-SCSEEEEEEEECH
T ss_pred CccCEEEECCCC----CCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECc
Confidence 367777754311 2379999999999999999 99999999999999998877777777764 5678899888764
No 120
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=98.85 E-value=5.5e-09 Score=79.88 Aligned_cols=74 Identities=26% Similarity=0.323 Sum_probs=58.0
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCC-CCcEEEEEEeC
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPE-GSPVELTVRSG 177 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~-g~~v~l~v~r~ 177 (406)
.++|+.+..... ...+++|..|.++|||+++| |++||+|++|||+++.+.+..++...++... +.++.++|.|.
T Consensus 13 ~g~G~~~~~g~~---~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~v~l~v~R~ 88 (90)
T 2q9v_A 13 TGFGFRILGGNE---PGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQT 88 (90)
T ss_dssp TBCCEEEEECSS---TTSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred CccCEEEEcccc---CCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEec
Confidence 467777753211 13468999999999999999 9999999999999998877788888776533 45788888764
No 121
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.85 E-value=5.5e-09 Score=83.74 Aligned_cols=79 Identities=25% Similarity=0.322 Sum_probs=61.9
Q ss_pred eeeEEEEeeccCCCC----CCCcEEEEEeCCCChhhh-cCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEE
Q 015469 101 TGVGLSIGYPTASDG----SSAGLVVISSMPGGPANR-AGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVR 175 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~----~~~~~~V~~v~~~spA~~-aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~ 175 (406)
.++||.+........ ..-.++|..|.++|||++ +||++||+|++|||+++.++...++..+++. .++.+.|+|.
T Consensus 22 ~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~agL~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~ 100 (114)
T 1uew_A 22 EGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKD-AGLSVTLRII 100 (114)
T ss_dssp SCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHH-TTTEEEEEEC
T ss_pred CCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEE
Confidence 467888753211000 011469999999999999 9999999999999999999877888888875 7889999998
Q ss_pred eCCee
Q 015469 176 SGAEI 180 (406)
Q Consensus 176 r~g~~ 180 (406)
|+++.
T Consensus 101 r~~~~ 105 (114)
T 1uew_A 101 PQEEL 105 (114)
T ss_dssp CCSCC
T ss_pred eCCcC
Confidence 87653
No 122
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=7.4e-09 Score=79.43 Aligned_cols=69 Identities=22% Similarity=0.363 Sum_probs=57.2
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeC
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 177 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~ 177 (406)
.++|+.+... ..+++|..|.++|||+++| |++||+|++|||+++ ..+.+++.++++.. +.++.++|.|.
T Consensus 18 ~~lG~~i~~~------~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~-~~~v~l~v~~~ 87 (91)
T 2e7k_A 18 EHLGVTFRVE------GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNA-SGSVILKILSG 87 (91)
T ss_dssp CCCCEEEEES------SSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTC-CSSBCEEEECC
T ss_pred CcEeEEEEec------CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 4577777643 4689999999999999987 999999999999999 65578998888764 67888888764
No 123
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.85 E-value=6.9e-09 Score=81.87 Aligned_cols=66 Identities=17% Similarity=0.175 Sum_probs=52.3
Q ss_pred cEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCC-CCCCcEEEEEEeCCeeEEEEEE
Q 015469 119 GLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAEIRHLALT 186 (406)
Q Consensus 119 ~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~-~~g~~v~l~v~r~g~~~~~~v~ 186 (406)
++.|..+.|+|||+++||++||+|++|||+++.++ .++..++.. ..++++.++|.|+|+..+++++
T Consensus 38 G~~V~~~~pas~A~~aGl~~GDvI~~ing~~v~~~--~d~~~~~~~~~~g~~v~l~v~R~g~~~~~~v~ 104 (105)
T 2i4s_A 38 GYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDP--NVMNTLFQSMNEMTEMSLTVERDGQQHDVYIQ 104 (105)
T ss_dssp EEEEEECSCTHHHHHHTCCTTCEEEEETTEETTST--THHHHHHHHHTTCSEEEEEEEETTEEEEEEEE
T ss_pred EEEEecCCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCeEEEEEEECCEEEEEEEe
Confidence 44566677777889999999999999999999997 455555543 4678999999999987776653
No 124
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.85 E-value=3.5e-09 Score=84.00 Aligned_cols=79 Identities=28% Similarity=0.432 Sum_probs=61.2
Q ss_pred eeeEEEEeec-----cCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEE
Q 015469 101 TGVGLSIGYP-----TASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTV 174 (406)
Q Consensus 101 ~g~g~~~~~~-----~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 174 (406)
.++|+.+... ........+++|..|.++|||+++| |++||+|++|||+++.+.+..++..+++. .++++.|++
T Consensus 20 ~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v 98 (108)
T 1q7x_A 20 NSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN-TGQVVHLLL 98 (108)
T ss_dssp CSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHHHHH-TTSEEEEEE
T ss_pred CCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEE
Confidence 4678877621 0000113579999999999999999 99999999999999997666777777765 478999999
Q ss_pred EeCCee
Q 015469 175 RSGAEI 180 (406)
Q Consensus 175 ~r~g~~ 180 (406)
.|++..
T Consensus 99 ~R~~~~ 104 (108)
T 1q7x_A 99 EKGQSP 104 (108)
T ss_dssp ECCCCS
T ss_pred EeCCcc
Confidence 987653
No 125
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.84 E-value=5.5e-09 Score=79.95 Aligned_cols=56 Identities=21% Similarity=0.306 Sum_probs=49.0
Q ss_pred EEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeC
Q 015469 121 VVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 177 (406)
Q Consensus 121 ~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~ 177 (406)
+|..|.++|||+++||++||+|++|||+++.+.+..++.++++. .++++.|+|.+.
T Consensus 34 ~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~p~ 89 (90)
T 1y7n_A 34 IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSN-AVGEIHMKTMPA 89 (90)
T ss_dssp EEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHHH-CCEEEEEEEECC
T ss_pred EEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEEC
Confidence 89999999999999999999999999999987667888888873 477888887653
No 126
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.84 E-value=4.1e-09 Score=86.35 Aligned_cols=81 Identities=25% Similarity=0.320 Sum_probs=63.4
Q ss_pred eeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCeeE
Q 015469 102 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIR 181 (406)
Q Consensus 102 g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~~~ 181 (406)
++|+.+.... ....+++|..|.++|||+++||++||+|++|||+++.++...++...++. +.++.|+|.|+++..
T Consensus 33 ~lG~~~~~~~---~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~~~~--~~~v~l~v~R~g~~~ 107 (128)
T 1uf1_A 33 SLGLTIRGGA---EYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKS--SRHLILTVKDVGRLP 107 (128)
T ss_dssp CCCEEEECCT---TTTCCCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHTT--CSEEEEEEECCSCCS
T ss_pred ccCEEEECcc---cCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHhc--CCeEEEEEEECCccc
Confidence 4677664321 01237899999999999999999999999999999999876777777764 568999999998866
Q ss_pred EEEEEe
Q 015469 182 HLALTR 187 (406)
Q Consensus 182 ~~~v~~ 187 (406)
+++++.
T Consensus 108 ~~~v~~ 113 (128)
T 1uf1_A 108 HARTTV 113 (128)
T ss_dssp SCSCCC
T ss_pred cccccc
Confidence 554443
No 127
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.84 E-value=4.6e-09 Score=83.76 Aligned_cols=73 Identities=33% Similarity=0.526 Sum_probs=60.4
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
.++|+.+.... +.+++|..|.++|||+++| |++||+|++|||+++.++...++..+++. .++.+.|+|.|++.
T Consensus 26 ~~lG~~l~~~~-----~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~ 99 (111)
T 2dlu_A 26 SGLGFGIVGGK-----TSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRN-CGNSVRMLVARDPA 99 (111)
T ss_dssp SCCCEEEECCS-----SSSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHH-HCSEEEEEEEESCT
T ss_pred CccCEEEeccC-----CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEeCCC
Confidence 45777775321 3579999999999999999 99999999999999998877888877764 47789999988654
No 128
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.84 E-value=4.1e-09 Score=83.48 Aligned_cols=77 Identities=26% Similarity=0.311 Sum_probs=59.9
Q ss_pred eeeEEEEee---ccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEe
Q 015469 101 TGVGLSIGY---PTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 176 (406)
Q Consensus 101 ~g~g~~~~~---~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r 176 (406)
.++|+.+.. .........+++|..|.++|||+++| |++||+|++|||+++.++...++..+++. .++++.|+|.|
T Consensus 20 ~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R 98 (107)
T 1wf8_A 20 DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRN-TKGNVRFVIGR 98 (107)
T ss_dssp TBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHH-CCSEEEEEEEE
T ss_pred CcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCCeEEEEEEe
Confidence 467877754 11100113479999999999999999 99999999999999998777787777764 47889999987
Q ss_pred CC
Q 015469 177 GA 178 (406)
Q Consensus 177 ~g 178 (406)
++
T Consensus 99 ~~ 100 (107)
T 1wf8_A 99 EK 100 (107)
T ss_dssp EC
T ss_pred CC
Confidence 54
No 129
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=98.84 E-value=9.8e-09 Score=78.50 Aligned_cols=72 Identities=24% Similarity=0.374 Sum_probs=57.1
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhc-CCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEe
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRA-GILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 176 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~a-Gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r 176 (406)
.++|+.+..... ...+++|..|.++|||+++ ||++||+|++|||+++.++...++...++. .+.++.++|.|
T Consensus 16 ~~lG~~i~~~~~---~~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~-~~~~v~l~v~r 88 (90)
T 1qav_A 16 GGLGISIKGGRE---NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKK-TGKEVVLEVKY 88 (90)
T ss_dssp TCCCEEEEEEGG---GTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHT-CCSEEEEEEEE
T ss_pred CCcCEEEEcccC---CCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEE
Confidence 356777653210 1346899999999999999 999999999999999999877888888775 46778888865
No 130
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=98.83 E-value=2.5e-09 Score=86.47 Aligned_cols=80 Identities=21% Similarity=0.253 Sum_probs=63.8
Q ss_pred eeeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCC
Q 015469 100 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 178 (406)
Q Consensus 100 ~~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g 178 (406)
..++|+.+..... ....+++|..|.++|||+++| |++||+|++|||+++..+...++...++...+..+.+++.|++
T Consensus 26 ~~~lG~~i~g~~~--~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~~ 103 (119)
T 1x6d_A 26 GAGLGFSLAGGAD--LENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKL 103 (119)
T ss_dssp TSCCSEEEECCSS--SSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEEEEEEECC
T ss_pred CCccCEEEeCCCC--CCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcCC
Confidence 4578888753211 113479999999999999999 9999999999999999877888888887666777778888877
Q ss_pred eeE
Q 015469 179 EIR 181 (406)
Q Consensus 179 ~~~ 181 (406)
+..
T Consensus 104 ~~~ 106 (119)
T 1x6d_A 104 TPE 106 (119)
T ss_dssp CSS
T ss_pred Ccc
Confidence 643
No 131
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=98.83 E-value=7.1e-09 Score=89.08 Aligned_cols=76 Identities=26% Similarity=0.327 Sum_probs=61.5
Q ss_pred eeeEEEEee---ccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEe
Q 015469 101 TGVGLSIGY---PTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 176 (406)
Q Consensus 101 ~g~g~~~~~---~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r 176 (406)
.|+|+.+.. .........+++|..|.++|||+++| |++||+|++|||+++..+...++..+++. .+.++.|+|.|
T Consensus 91 ~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~-~g~~v~L~V~R 169 (170)
T 3egg_C 91 EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN-TKGRVRFMIGR 169 (170)
T ss_dssp TBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHH-CCSEEEEEEEE
T ss_pred CeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEe
Confidence 478888765 11111123579999999999999999 99999999999999998888899888886 67899999987
Q ss_pred C
Q 015469 177 G 177 (406)
Q Consensus 177 ~ 177 (406)
+
T Consensus 170 ~ 170 (170)
T 3egg_C 170 E 170 (170)
T ss_dssp C
T ss_pred C
Confidence 4
No 132
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=98.83 E-value=6.9e-09 Score=82.00 Aligned_cols=70 Identities=17% Similarity=0.280 Sum_probs=56.1
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeC
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 177 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~ 177 (406)
.++|+.+... ..+++|..|.++|||+++| |++||+|++|||+++.+....++..+++. .+.++.++|.|.
T Consensus 14 ~glG~~i~~~------~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~ 84 (106)
T 2la8_A 14 KELGLSLSPN------EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKG-ANGKVSMEVTRP 84 (106)
T ss_dssp STTCCEEEEC------SSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHS-CBSCEEEEEEEC
T ss_pred CccCEEEEeC------CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhC-CCCeEEEEEEeC
Confidence 3566665432 3579999999999999999 99999999999999998766777777765 445788888774
No 133
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.83 E-value=3.1e-09 Score=83.54 Aligned_cols=61 Identities=36% Similarity=0.471 Sum_probs=55.7
Q ss_pred cEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCee
Q 015469 119 GLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEI 180 (406)
Q Consensus 119 ~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~~ 180 (406)
+++|..|.++|||+++||++||+|++|||+++.++...++..+++.. ++++.|+|.|+++.
T Consensus 30 ~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~g~~ 90 (103)
T 1v5l_A 30 PLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAA-SYQLCLKIDRAETR 90 (103)
T ss_dssp EEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTC-CSEEECEECCCTTT
T ss_pred CeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEECCeE
Confidence 68899999999999999999999999999999997778999999876 89999999988763
No 134
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=98.83 E-value=1.2e-08 Score=80.80 Aligned_cols=77 Identities=19% Similarity=0.376 Sum_probs=58.1
Q ss_pred eeeEEEEeeccCC---CCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeC
Q 015469 101 TGVGLSIGYPTAS---DGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 177 (406)
Q Consensus 101 ~g~g~~~~~~~~~---~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~ 177 (406)
.++|+.+...... .....+++|..|.++|||+ +||++||+|++|||+++.++........+. ..++++.++|.|+
T Consensus 19 ~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-agl~~GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~R~ 96 (107)
T 2h2b_A 19 FGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQLQENDRVAMVNGVSMDNVEHAFAVQQLR-KSGKNAKITIRRK 96 (107)
T ss_dssp TBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TTBCTTCEEEEETTEECTTCCHHHHHHHHH-TCCSEEEEEEEEE
T ss_pred CccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hCCCCCCEEEEECCEECCCccHHHHHHHhh-CCCCEEEEEEEEC
Confidence 5678887532110 0113489999999999999 999999999999999999986554444444 4678999999887
Q ss_pred Ce
Q 015469 178 AE 179 (406)
Q Consensus 178 g~ 179 (406)
++
T Consensus 97 ~~ 98 (107)
T 2h2b_A 97 KG 98 (107)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 135
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=98.83 E-value=8.3e-09 Score=81.01 Aligned_cols=61 Identities=23% Similarity=0.394 Sum_probs=52.7
Q ss_pred CcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 118 AGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 118 ~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
.+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++... .++.++|.|.++
T Consensus 39 ~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~~~ 100 (103)
T 2fcf_A 39 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAG-NPVVFMVQSIIS 100 (103)
T ss_dssp --EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SSEEEEEECCCC
T ss_pred CCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CcEEEEEEECCC
Confidence 479999999999999999 9999999999999999987789988887654 489999987643
No 136
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=98.82 E-value=7.5e-09 Score=84.78 Aligned_cols=61 Identities=18% Similarity=0.403 Sum_probs=53.8
Q ss_pred CcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 118 AGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 118 ~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
.+++|..|.++|||+++| |++||+|++|||+++.+.+..++..+++. .+.++.|+|.|+++
T Consensus 65 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~r~~~ 126 (128)
T 1nf3_C 65 PGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIA-NSRNLIITVRPANQ 126 (128)
T ss_dssp EEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHHHHHHHHH-TTTSEEEEEECCCC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECCc
Confidence 368999999999999999 99999999999999988778888888873 45679999988764
No 137
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=98.81 E-value=1.5e-08 Score=77.81 Aligned_cols=70 Identities=24% Similarity=0.318 Sum_probs=54.5
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEE
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVR 175 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~ 175 (406)
.++|+.+..... ....+++|..|.++|||+++||++||+|++|||+++.+++.+++.+++.. .+++++|+
T Consensus 20 ~~~Gf~v~~~~~--~~~~g~~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~l~~~l~~---~~l~ltV~ 89 (94)
T 3kzd_A 20 DTYGFSLSSVEE--DGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ---PSLGLLVR 89 (94)
T ss_dssp -CCSEEEEEECS--SSSCEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHS---SEEEEEEE
T ss_pred CCcCEEEEecCC--CCcCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC---CeEEEEEE
Confidence 357777754211 11247999999999999999999999999999999999888888888862 45666664
No 138
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.81 E-value=7e-09 Score=83.55 Aligned_cols=76 Identities=24% Similarity=0.377 Sum_probs=60.8
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
.++|+.+..... ...++++|..|.++|||+++| |++||+|++|||+++...+.+++..+++ ..++.+.|+|.|+++
T Consensus 27 ~~lG~~i~~~~~--~~~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r~~~ 103 (117)
T 1v62_A 27 SALGISLTTTSL--RNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLA-SISEKVRLEILPVPQ 103 (117)
T ss_dssp CCCCCEEEEECC--SSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHH-SCSSEEEEEECCBTT
T ss_pred CcccEEEEccCC--CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH-hCCCeEEEEEEECCC
Confidence 356666653211 012349999999999999999 9999999999999998877899999888 478899999988654
No 139
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.81 E-value=8e-09 Score=79.46 Aligned_cols=74 Identities=31% Similarity=0.493 Sum_probs=58.9
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCC
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 178 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g 178 (406)
.++|+.+.... ..+.+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++.. +.++.++|.|++
T Consensus 16 ~glG~~l~~~~---~~~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~r~~ 90 (93)
T 2dkr_A 16 EGLGFNIMGGK---EQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAA-QGSVKLVVRSGP 90 (93)
T ss_dssp TCCCEEEECSS---SSSCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHC-CSEEEEEECCCC
T ss_pred CCccEEEeccc---CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCcEEEEEEeCC
Confidence 46788875321 113579999999999999996 999999999999999988778888777643 457888887754
No 140
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=98.81 E-value=1.2e-08 Score=76.20 Aligned_cols=59 Identities=29% Similarity=0.426 Sum_probs=50.3
Q ss_pred cEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCC
Q 015469 119 GLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 178 (406)
Q Consensus 119 ~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g 178 (406)
+++|..|.++|||+++| |++||+|++|||+++.+++..++..++.... .++.+++.|+|
T Consensus 22 gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~g 81 (81)
T 2rcz_A 22 HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK-GKLKMVVQRDE 81 (81)
T ss_dssp EEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTST-TEEEEEEEC--
T ss_pred CEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CeEEEEEEeCC
Confidence 68999999999999999 9999999999999999666788888887644 48888887754
No 141
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=98.80 E-value=1.2e-08 Score=80.60 Aligned_cols=59 Identities=29% Similarity=0.414 Sum_probs=51.8
Q ss_pred EEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 120 LVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 120 ~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
.+|..|.++|||+++||++||+|++|||+++..++..++..+++. .++.+.|++.|.+.
T Consensus 45 ~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~~~ 103 (107)
T 3qe1_A 45 QHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRA-GEKELILTVLSVES 103 (107)
T ss_dssp EEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHH-CSSEEEEEEECSSC
T ss_pred eEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEcCCC
Confidence 369999999999999999999999999999998778888888873 57899999987543
No 142
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=9.4e-09 Score=83.16 Aligned_cols=78 Identities=24% Similarity=0.368 Sum_probs=61.2
Q ss_pred eeeEEEEeeccCC--CCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeC
Q 015469 101 TGVGLSIGYPTAS--DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 177 (406)
Q Consensus 101 ~g~g~~~~~~~~~--~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~ 177 (406)
.++||.+...... .....+++|..|.++|||+++| |++||+|++|||+++.++...++...++. .++.+.|+|.|+
T Consensus 28 ~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~ 106 (120)
T 2eno_A 28 SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRN-AGYAVSLRVQHR 106 (120)
T ss_dssp SSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHH-HCSEEEEEEEEE
T ss_pred CCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence 5788887642110 0014579999999999999999 99999999999999999877788777764 377899998876
Q ss_pred Ce
Q 015469 178 AE 179 (406)
Q Consensus 178 g~ 179 (406)
+.
T Consensus 107 ~~ 108 (120)
T 2eno_A 107 LQ 108 (120)
T ss_dssp EE
T ss_pred Cc
Confidence 54
No 143
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=98.79 E-value=1.2e-08 Score=79.07 Aligned_cols=59 Identities=20% Similarity=0.330 Sum_probs=51.9
Q ss_pred CcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeC
Q 015469 118 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 177 (406)
Q Consensus 118 ~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~ 177 (406)
.+++|..|.++|||+++||++||+|++|||+++.+++..++..+++.. +.++.|+|.+.
T Consensus 37 ~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~~~ 95 (96)
T 2ego_A 37 MVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKAS-GNVLRLETLYG 95 (96)
T ss_dssp EEEEEEEECTTCHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHT-TTEEEEEEECC
T ss_pred CCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEEC
Confidence 478999999999999999999999999999999998778888888765 45888888654
No 144
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.77 E-value=3.6e-09 Score=85.27 Aligned_cols=98 Identities=16% Similarity=0.278 Sum_probs=67.6
Q ss_pred CCCccChhhhccccccC-cceeeeeEEEEeeccCCC---CCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCH
Q 015469 80 FTRFLEPEKFNSLRSGT-QGALTGVGLSIGYPTASD---GSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGI 155 (406)
Q Consensus 80 ht~~~~~~~~~~~~~~~-~~~~~g~g~~~~~~~~~~---~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~ 155 (406)
.+.++...+++...... .....++|+.+....... ....+++|..|.++|||+ +||++||+|++|||+++.++..
T Consensus 4 ~s~~~~~~~~~~~~v~l~k~~~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~-~gL~~GD~I~~Vng~~v~~~~~ 82 (117)
T 2csj_A 4 GSSGMEEVIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVLH 82 (117)
T ss_dssp SSCCCSCEEEEEEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HHBCTTCEEEEESSCBCBTCCH
T ss_pred CCCCcccccceEEEEEEEECCCCccCEEEeCCcCCccccCCCCCEEEEEECCCCccc-ccCCCCCEEEEECCEECCCcCH
Confidence 34455554444332212 122367888875421100 013468999999999997 9999999999999999999877
Q ss_pred HHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 156 YDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 156 ~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
.++...++. .++++.|+|.|.+.
T Consensus 83 ~~~~~~l~~-~~~~v~l~v~R~~~ 105 (117)
T 2csj_A 83 SFAVQQLRK-SGKIAAIVVKRPRK 105 (117)
T ss_dssp HHHHHHHHH-SCSEEEEEEEEEEE
T ss_pred HHHHHHHhc-CCCeEEEEEEECCc
Confidence 787777765 57899999987543
No 145
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=98.77 E-value=1.9e-08 Score=77.69 Aligned_cols=60 Identities=25% Similarity=0.322 Sum_probs=51.5
Q ss_pred CCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCC
Q 015469 117 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 178 (406)
Q Consensus 117 ~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g 178 (406)
..+++|..|.++|||++ ||++||+|++|||+++.+....++...++ ..++++.|+|.|+.
T Consensus 34 ~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~-~~~~~v~l~v~R~~ 93 (95)
T 1mfg_A 34 DDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLK-TFQNTVELIIVREV 93 (95)
T ss_dssp CCCEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCBHHHHHHHHH-HCCSEEEEEEEEEC
T ss_pred CCCEEEEEECCCCchhh-CCCCCCEEEEECCEEcCCCCHHHHHHHhh-cCCCeEEEEEEeCC
Confidence 45799999999999999 99999999999999999877677777665 45788999987753
No 146
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=98.77 E-value=3.3e-08 Score=78.47 Aligned_cols=73 Identities=23% Similarity=0.349 Sum_probs=60.2
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCC-CCCCcEEEEEEeCCe
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAE 179 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~-~~g~~v~l~v~r~g~ 179 (406)
.|+||.+.-. ..+.+|..+.+ |+..+||++||+|++|||+++.+++..++.++++. +.|+++.|+|.|++.
T Consensus 23 ~G~GFsI~~~------~~g~~V~~I~~--~~~~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L~V~R~g~ 94 (113)
T 3soe_A 23 KGFGFAIADS------PTGQKVKMILD--SQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGP 94 (113)
T ss_dssp TBSSEEEEEE------TTEEEEEEESC--GGGSTTCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEEEEEESSC
T ss_pred CcccEEEeCC------CCCcEEEEecC--hHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCc
Confidence 4788888432 23566888887 68899999999999999999999988999999985 468999999999876
Q ss_pred eE
Q 015469 180 IR 181 (406)
Q Consensus 180 ~~ 181 (406)
..
T Consensus 95 ~~ 96 (113)
T 3soe_A 95 PS 96 (113)
T ss_dssp C-
T ss_pred cC
Confidence 43
No 147
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=98.76 E-value=1.9e-08 Score=81.12 Aligned_cols=73 Identities=26% Similarity=0.438 Sum_probs=58.5
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCC
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 178 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g 178 (406)
.++|+.+..... ..+++|..|.++|||+++| |++||+|++|||+++.++...+....+.. .+.++.+++.|++
T Consensus 25 ~glG~~l~~~~~----~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~~ 98 (119)
T 1tp5_A 25 TGLGFNIVGGED----GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN-AGQTVTIIAQYKP 98 (119)
T ss_dssp SCCCEEEEECGG----GCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHT-SCSEEEEEEEECH
T ss_pred CCccEEEecCCC----CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence 467888764321 2579999999999999999 99999999999999999876666666653 5778899888754
No 148
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=98.76 E-value=8.5e-09 Score=81.17 Aligned_cols=91 Identities=16% Similarity=0.175 Sum_probs=62.5
Q ss_pred CCCCCccChhhhccccccCcceeeeeEEEEeeccC----CCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCC
Q 015469 78 DPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTA----SDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESM 153 (406)
Q Consensus 78 D~ht~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~----~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~ 153 (406)
|+|+.+.+....- .. ....++|+.+..... ......+++|..|.++|||+++||++||+|++|||+++..+
T Consensus 9 ~p~s~~~~~~v~l--~~---~~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~ 83 (104)
T 2z17_A 9 SDFSWSQRKLVTV--EK---QDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGF 83 (104)
T ss_dssp --CCCSCCCEEEE--EC---CTTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHTCCTTCBCCEETTEECTTC
T ss_pred ccCCCCcceEEEE--Ee---CCCCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEEcCCC
Confidence 6888777654331 11 111246777654210 01123579999999999999999999999999999999977
Q ss_pred CHHHHHHHhCCCCCCcEEEEE
Q 015469 154 GIYDAAERLQGPEGSPVELTV 174 (406)
Q Consensus 154 ~~~~~~~~l~~~~g~~v~l~v 174 (406)
+..++.++++...+ ++.|+|
T Consensus 84 ~~~~~~~~l~~~~~-~v~l~v 103 (104)
T 2z17_A 84 TYKQVVDLIRSSGN-LLTIET 103 (104)
T ss_dssp CHHHHHHHHHHTTT-EEEEEC
T ss_pred CHHHHHHHHHhCCC-cEEEEE
Confidence 78899888876543 666654
No 149
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.76 E-value=2.3e-08 Score=79.09 Aligned_cols=77 Identities=22% Similarity=0.314 Sum_probs=60.0
Q ss_pred eeeEEEEeeccCC-----CCCCCcEEEEEeCCCChhhhc-CCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEE
Q 015469 101 TGVGLSIGYPTAS-----DGSSAGLVVISSMPGGPANRA-GILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTV 174 (406)
Q Consensus 101 ~g~g~~~~~~~~~-----~~~~~~~~V~~v~~~spA~~a-Gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 174 (406)
.++|+.+.-.... .....+++|..|.++|||+++ ||++||+|++|||+++......++..+++. .+.++.|+|
T Consensus 19 ~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v 97 (107)
T 1uhp_A 19 GSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKT-AKEPIVVQV 97 (107)
T ss_dssp SCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHH-CCSSEEEEE
T ss_pred CccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCcEEEEE
Confidence 4678877532110 112457999999999999999 999999999999999998877888877764 567889988
Q ss_pred EeCC
Q 015469 175 RSGA 178 (406)
Q Consensus 175 ~r~g 178 (406)
.|.+
T Consensus 98 ~R~~ 101 (107)
T 1uhp_A 98 LRRT 101 (107)
T ss_dssp EECC
T ss_pred EeCC
Confidence 7754
No 150
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=98.75 E-value=2.1e-08 Score=88.09 Aligned_cols=74 Identities=26% Similarity=0.350 Sum_probs=62.3
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
.++|+.+..... ...+++|..|.++|||+++||++||+|++|||+++.++...++..+++. |..+.++|.|+|+
T Consensus 96 ~~lG~~i~~~~~---~~~~~~V~~V~~gspA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~l~~--~~~v~l~v~r~g~ 169 (192)
T 3k1r_A 96 EGLGLSVRGGLE---FGCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRT--EKTVSIKVRHIGL 169 (192)
T ss_dssp TCCCEEEEEEGG---GTEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHTS--SSEEEEEEEECCE
T ss_pred CceeEEEEcccc---cCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHcC--CCeEEEEEEECCc
Confidence 467877743210 1347899999999999999999999999999999999888899998886 8899999999886
No 151
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=98.75 E-value=3.3e-08 Score=94.18 Aligned_cols=84 Identities=23% Similarity=0.388 Sum_probs=67.5
Q ss_pred eeeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCC-CCCCcEEEEEEe-C
Q 015469 100 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRS-G 177 (406)
Q Consensus 100 ~~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~-~~g~~v~l~v~r-~ 177 (406)
+..+|+.+.... ...+++|..|.++|||+++||++||+|++|||+++.++ .++...+.. .+|++++|+|.| +
T Consensus 228 ~~~lGi~~~~~~----~~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~~ 301 (324)
T 1y8t_A 228 HASLGVQVTNDK----DTLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSA--DALVAAVRSKAPGATVALTFQDPS 301 (324)
T ss_dssp CEECCEEEESCS----SSSSEEEEEECTTSTTTTTTCCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEEEECSS
T ss_pred ccccceEeeecc----CCCceEEEEECCCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECC
Confidence 345676665321 14579999999999999999999999999999999985 677766654 578999999999 9
Q ss_pred CeeEEEEEEeec
Q 015469 178 AEIRHLALTREK 189 (406)
Q Consensus 178 g~~~~~~v~~~~ 189 (406)
|+.++++++...
T Consensus 302 g~~~~~~v~~~~ 313 (324)
T 1y8t_A 302 GGSRTVQVTLGK 313 (324)
T ss_dssp CCEEEEEEECEE
T ss_pred CCEEEEEEEEcc
Confidence 988888776543
No 152
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=98.75 E-value=1.3e-08 Score=77.46 Aligned_cols=57 Identities=30% Similarity=0.452 Sum_probs=50.1
Q ss_pred cEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEe
Q 015469 119 GLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 176 (406)
Q Consensus 119 ~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r 176 (406)
+++|..|.++|||+++| |++||+|++|||+++.+.+.+++.++++... .++.|++.+
T Consensus 22 gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~-~~v~L~v~~ 79 (88)
T 3e17_A 22 QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSR-GKLQLVVLR 79 (88)
T ss_dssp EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTT-TEEEEEECC
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEeC
Confidence 78999999999999999 9999999999999998887889988888644 477777754
No 153
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=98.74 E-value=2.6e-08 Score=75.59 Aligned_cols=71 Identities=27% Similarity=0.444 Sum_probs=55.1
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhh-cCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEE
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANR-AGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVR 175 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~-aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~ 175 (406)
.++|+.+..... ...+++|..|.++|||++ +||++||+|++|||+++.+++..++..+++. .+.++.++|.
T Consensus 14 ~~lG~~i~~~~~---~~~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~ 85 (87)
T 4e34_A 14 EGLGISITGGKE---HGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQ-QRGEIEFEVV 85 (87)
T ss_dssp BCCCEEEEEEGG---GTEEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHH-CCSEEEEEEE
T ss_pred CcccEEEEccCC---CCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEE
Confidence 356776643210 123689999999999999 6999999999999999998888888888864 5567777764
No 154
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=6.6e-09 Score=82.09 Aligned_cols=74 Identities=22% Similarity=0.367 Sum_probs=58.5
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
.++|+.+.... ...+++|..|.++|||+++||++||+|++|||+++..++..++...++. .+.++.+++.|.+.
T Consensus 19 ~~~G~~l~~~~----~~~g~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~~~ 92 (106)
T 2eei_A 19 GSYGFSLKTVQ----GKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKK-SGSRVMFLLVDKET 92 (106)
T ss_dssp SSCSCCEECCS----SCCSCEECCCCTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHH-HCSEEEEEECCTTT
T ss_pred CCCCEEEEecc----CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEcCch
Confidence 45676664321 1357899999999999999999999999999999998877887777753 36788888877654
No 155
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.73 E-value=2.4e-08 Score=81.22 Aligned_cols=76 Identities=25% Similarity=0.368 Sum_probs=60.3
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCe
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 179 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 179 (406)
.++|+.+..... ....+++|..|.++|||+++| |++||+|++|||+++.+....++...++.. +.++.|+|.|++.
T Consensus 36 ~glG~~l~~~~~--~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~~~ 112 (124)
T 2daz_A 36 NGLGLSLAGNKD--RSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTA-PSKVKLVFIRNED 112 (124)
T ss_dssp SCCCEEEECBSS--TTSCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHS-CSEEEEEEEECTT
T ss_pred CccCEEEeccCC--CCcCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCCC
Confidence 467887754211 113479999999999999999 999999999999999988777777777643 5689999988765
No 156
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=98.73 E-value=1.5e-08 Score=79.52 Aligned_cols=59 Identities=25% Similarity=0.327 Sum_probs=51.7
Q ss_pred CCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeC
Q 015469 117 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 177 (406)
Q Consensus 117 ~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~ 177 (406)
..+++|..|.++|||++ ||++||+|++|||+++.+....++...++ ..++++.|+|.|+
T Consensus 42 ~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~R~ 100 (103)
T 1n7t_A 42 DDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLK-TFQNTVELIIVRE 100 (103)
T ss_dssp CCSEECCCBSSSSTTSS-SCCTTCEEEEETTEECSSCCHHHHHHHHH-HCCSEEEEEEECC
T ss_pred CCCEEEEEECCCCchHH-CCCCCCEEEEECCEECCCCCHHHHHHHhh-cCCCeEEEEEEec
Confidence 45799999999999999 99999999999999999887777777776 4578899999875
No 157
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=98.71 E-value=3.9e-08 Score=93.41 Aligned_cols=70 Identities=27% Similarity=0.436 Sum_probs=62.0
Q ss_pred CCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCC-CCCCcEEEEEEeCCeeEEEEEEee
Q 015469 117 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAEIRHLALTRE 188 (406)
Q Consensus 117 ~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~-~~g~~v~l~v~r~g~~~~~~v~~~ 188 (406)
..+++|..|.++|||+++||++||+|++|||+++.++ .++...+.. .+|++++|+|.|+|+..+++++..
T Consensus 243 ~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~ 313 (318)
T 1te0_A 243 LQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISA--LETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTIQ 313 (318)
T ss_dssp CCCEEEEEECTTSTTTTTCCCTTCCEEEETTEECCCH--HHHHHHHHTSCTTCEEEEEEESSSCEEEEEEECE
T ss_pred CCcEEEEEeCCCChHHHCCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEc
Confidence 3579999999999999999999999999999999984 777777765 678999999999999888887654
No 158
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=98.71 E-value=4.2e-08 Score=79.91 Aligned_cols=72 Identities=21% Similarity=0.312 Sum_probs=57.6
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEe
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 176 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r 176 (406)
.++|+.+..... ...+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++... .++.+++.|
T Consensus 31 ~~lG~~i~gg~~---~~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~r 103 (125)
T 3hpk_A 31 NLIGISIGGGAQ---YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK-GEVTIHYNK 103 (125)
T ss_dssp SCCCEEEEECSS---CCSSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSC-SEEEEEEEE
T ss_pred CCcCEEEeccCC---CCCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEE
Confidence 467777653211 12468999999999999999 9999999999999999887888888887644 458888876
No 159
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=98.71 E-value=4.4e-08 Score=93.95 Aligned_cols=71 Identities=21% Similarity=0.407 Sum_probs=62.5
Q ss_pred CCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCC-CCCCcEEEEEEeCCeeEEEEEEeec
Q 015469 117 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAEIRHLALTREK 189 (406)
Q Consensus 117 ~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~-~~g~~v~l~v~r~g~~~~~~v~~~~ 189 (406)
..+++|..|.++|||+++||++||+|++|||+++.++ .++...+.. ++|++++|+|.|+|+.++++++...
T Consensus 262 ~~G~~V~~V~~~spA~~aGL~~GDvI~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~ 333 (345)
T 3stj_A 262 QRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDT 333 (345)
T ss_dssp CSSEEEEEECTTSHHHHHTCCTTCEECEETTEECSCH--HHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECEE
T ss_pred CceEEEEEeccCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEcc
Confidence 3579999999999999999999999999999999984 777777755 5799999999999999988887544
No 160
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=98.71 E-value=3.7e-08 Score=77.31 Aligned_cols=74 Identities=27% Similarity=0.405 Sum_probs=58.3
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhc-CCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCC
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRA-GILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 178 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~a-Gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g 178 (406)
.++|+.+..... ...+++|..|.++|||+++ ||++||+|++|||+++.+.+..++..+++.. +.+++|++.+..
T Consensus 21 ~~lG~~l~~g~~---~~~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~~~~ 95 (103)
T 2dc2_A 21 EGLGISITGGKE---HGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQ-RGEIEFEVVYVA 95 (103)
T ss_dssp SCCCEEEEEEGG---GTEEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHC-CSEEEEEEEECC
T ss_pred CccCEEEEeccC---CCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCcEEEEEEecC
Confidence 467777653211 1236899999999999995 9999999999999999988888888888754 458888887643
No 161
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=98.69 E-value=7.8e-08 Score=84.52 Aligned_cols=69 Identities=22% Similarity=0.290 Sum_probs=58.6
Q ss_pred CCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEe---CCeeEEEEEEe
Q 015469 117 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS---GAEIRHLALTR 187 (406)
Q Consensus 117 ~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r---~g~~~~~~v~~ 187 (406)
..+++|..|.++|||++ ||++||+|++|||+++.+....++...++.. +..+.|+|.| +|+..++.+..
T Consensus 23 ~~g~~V~~v~~~spA~~-gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~r~~~~G~~~~~~v~~ 94 (195)
T 2qbw_A 23 DDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTF-QNTVELIIVREVGNGAKQEIRVRV 94 (195)
T ss_dssp CCSEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCCHHHHHHHHHHC-CSEEEEEEEEECSSSCEEEEEEEE
T ss_pred CCCEEEEEECCCChHHh-CCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEcCCCCCCceeEeEe
Confidence 45899999999999999 9999999999999999998777887777643 4589999998 78777666543
No 162
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.68 E-value=4.2e-08 Score=78.86 Aligned_cols=60 Identities=23% Similarity=0.455 Sum_probs=52.9
Q ss_pred CcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCC
Q 015469 118 AGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 178 (406)
Q Consensus 118 ~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g 178 (406)
.+++|..|.++|||+++| |++||+|++|||+++.+....++..+++. .++.+.|+|.|..
T Consensus 50 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~r~~ 110 (117)
T 2ehr_A 50 KGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKN-AGNPVVFIVQSLS 110 (117)
T ss_dssp CSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHHHHHHHT-SCSSEEEEECCBS
T ss_pred CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence 479999999999999999 99999999999999999877888888875 5788999887643
No 163
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=98.67 E-value=4.3e-08 Score=77.46 Aligned_cols=74 Identities=16% Similarity=0.209 Sum_probs=57.9
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC--CCCCCEEEEECCEecCCCCHHHHHHHhCCCC---CCcEEEEEE
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG--ILSGDVILAIDDTSTESMGIYDAAERLQGPE---GSPVELTVR 175 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG--l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~---g~~v~l~v~ 175 (406)
.++|+.+..... ...+++|..|.++|||+++| |++||+|++|||+++.++...++..+++... +..+.|+|+
T Consensus 29 ~~~G~~~~gg~~---~~~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~~~~~v~l~v~ 105 (107)
T 3nfk_A 29 GRFGFNVKGGYD---QKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVR 105 (107)
T ss_dssp SCCCEEEEEEGG---GTEEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGGSBTTBEEEEEE
T ss_pred CCCCEEEEccCC---CCCCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCcEEEEEEE
Confidence 456776643210 12368999999999999999 9999999999999999988888888887543 358888887
Q ss_pred eC
Q 015469 176 SG 177 (406)
Q Consensus 176 r~ 177 (406)
|+
T Consensus 106 r~ 107 (107)
T 3nfk_A 106 PN 107 (107)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 164
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=98.66 E-value=6.1e-08 Score=85.38 Aligned_cols=80 Identities=24% Similarity=0.343 Sum_probs=63.1
Q ss_pred eeeeEEEEeeccCC-CCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCC-CCcEEEEEEe
Q 015469 100 LTGVGLSIGYPTAS-DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPE-GSPVELTVRS 176 (406)
Q Consensus 100 ~~g~g~~~~~~~~~-~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~-g~~v~l~v~r 176 (406)
..++|+.+...... .....+++|..|.++|||+++| |++||+|++|||+++.+.+..++..+++... |+++.+++.|
T Consensus 17 ~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R 96 (196)
T 1p1d_A 17 VTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEF 96 (196)
T ss_dssp TTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTCCSSSEEEEEEEE
T ss_pred CCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEe
Confidence 45778877643110 0013468999999999999999 9999999999999999766688888887654 8899999999
Q ss_pred CCe
Q 015469 177 GAE 179 (406)
Q Consensus 177 ~g~ 179 (406)
+++
T Consensus 97 ~~~ 99 (196)
T 1p1d_A 97 DVA 99 (196)
T ss_dssp CSC
T ss_pred cCC
Confidence 875
No 165
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.66 E-value=1.2e-08 Score=81.30 Aligned_cols=59 Identities=25% Similarity=0.282 Sum_probs=50.9
Q ss_pred CcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEe
Q 015469 118 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 176 (406)
Q Consensus 118 ~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r 176 (406)
.+++|..|.++|||+++||++||+|++|||+++..++..++.++++...++++.|+|.|
T Consensus 36 ~~v~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~~v~l~V~~ 94 (111)
T 1vae_A 36 TPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVS 94 (111)
T ss_dssp SSCEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEEC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEe
Confidence 36789999999999999999999999999999996667888888876666678888764
No 166
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=98.66 E-value=7e-08 Score=78.47 Aligned_cols=64 Identities=25% Similarity=0.411 Sum_probs=54.4
Q ss_pred CCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCC-CCCCcEEEEEEeCCeeEEEEE
Q 015469 117 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAEIRHLAL 185 (406)
Q Consensus 117 ~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~-~~g~~v~l~v~r~g~~~~~~v 185 (406)
..+++|..|.++|||+++ |++||+|++|||+++.++ .++...+.. ..|+++.++| |+|+ .++++
T Consensus 24 ~~gv~V~~V~~~spA~~a-L~~GD~Il~InG~~v~~~--~dl~~~l~~~~~g~~v~l~V-R~g~-~~v~l 88 (125)
T 2hga_A 24 PDGVQIDSVVPGSPASKV-LTPGLVIESINGMPTSNL--TTYSAALKTISVGEVINITT-DQGT-FHLKT 88 (125)
T ss_dssp CCCEEEEEECSSSGGGGT-SCTTCEEEEETTEECSSH--HHHHHHHTTCCTTCEEEEEE-TTEE-EEEEC
T ss_pred CCceEEEEECCCChHHHh-cCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEE-ECCE-EEEEE
Confidence 457899999999999999 999999999999999985 677777763 5788999999 9887 44443
No 167
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.66 E-value=2.1e-08 Score=80.96 Aligned_cols=76 Identities=17% Similarity=0.215 Sum_probs=59.2
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhc--CCCCCCEEEEECCEecCCCCHHHHHHHhCCCC---CCcEEEEEE
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRA--GILSGDVILAIDDTSTESMGIYDAAERLQGPE---GSPVELTVR 175 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~a--Gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~---g~~v~l~v~ 175 (406)
.++|+.+..... ...+++|..|.++|||+++ ||++||+|++|||+++.++...++..+++... +.++.|+|.
T Consensus 27 ~~~G~~l~gg~~---~~~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~~~~~~v~l~v~ 103 (119)
T 2cs5_A 27 GRFGFNVKGGYD---QKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVR 103 (119)
T ss_dssp SCCSEEEEEEGG---GTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEEE
T ss_pred CCcCEEEecccC---CCCCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCCEEEEEEE
Confidence 457777653211 1236899999999999999 99999999999999999988888888776543 258899988
Q ss_pred eCCe
Q 015469 176 SGAE 179 (406)
Q Consensus 176 r~g~ 179 (406)
|+..
T Consensus 104 R~~~ 107 (119)
T 2cs5_A 104 PNAV 107 (119)
T ss_dssp CCCC
T ss_pred cccc
Confidence 8653
No 168
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=98.66 E-value=5.1e-08 Score=77.99 Aligned_cols=76 Identities=17% Similarity=0.324 Sum_probs=59.7
Q ss_pred eeeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeC-C
Q 015469 100 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG-A 178 (406)
Q Consensus 100 ~~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~-g 178 (406)
..++|+.+.... ....+++|..|.++|||+++||++||+|++|||+++.++...++...++. +..+.++|.|+ +
T Consensus 26 ~~~lG~~l~~~~---~~~~gv~V~~V~~~s~A~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~--~~~v~l~v~r~~g 100 (114)
T 1x5n_A 26 SRGLGCSISSGP---IQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKS--SRSLTISIVAAAG 100 (114)
T ss_dssp SCCCCEEEEECC---SSSCSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTHHHHHHHH--CSSEEEEECSSTT
T ss_pred CCceeEEEeecC---CCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhc--CCeEEEEEEcCCC
Confidence 346788775431 11357999999999999999999999999999999999876667666653 35789999887 6
Q ss_pred ee
Q 015469 179 EI 180 (406)
Q Consensus 179 ~~ 180 (406)
+.
T Consensus 101 ~~ 102 (114)
T 1x5n_A 101 RE 102 (114)
T ss_dssp TH
T ss_pred Cc
Confidence 54
No 169
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.65 E-value=2e-08 Score=78.83 Aligned_cols=76 Identities=17% Similarity=0.251 Sum_probs=58.5
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCC----CCCcEEEEEE
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGP----EGSPVELTVR 175 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~----~g~~v~l~v~ 175 (406)
.++||.+.-... ......+|..|.+++||+++| |++||+|++|||+++..++.+++.++++.. .++.+.+++.
T Consensus 17 ~glG~~i~gg~~--~~~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~~~i~l~v~ 94 (103)
T 1ufx_A 17 ATLGIAIEGGAN--TRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVT 94 (103)
T ss_dssp SSCCEEEECBTT--SSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEEEC
T ss_pred CcCCeEEECCCC--CCCCcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcccCCCCeEEEEEE
Confidence 568888754311 001124899999999999999 999999999999999998888888888643 5677888777
Q ss_pred eCC
Q 015469 176 SGA 178 (406)
Q Consensus 176 r~g 178 (406)
|.+
T Consensus 95 r~~ 97 (103)
T 1ufx_A 95 EFN 97 (103)
T ss_dssp CCC
T ss_pred Ecc
Confidence 654
No 170
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=3.8e-08 Score=78.68 Aligned_cols=57 Identities=26% Similarity=0.336 Sum_probs=49.7
Q ss_pred CcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeC
Q 015469 118 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 177 (406)
Q Consensus 118 ~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~ 177 (406)
.+++|..|.++|||+++||++||+|++|||+++.++...++..++++ ..+.|+|+|.
T Consensus 44 ~gv~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~---~~v~l~v~R~ 100 (114)
T 2d8i_A 44 RRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ---PSLGLLVRTY 100 (114)
T ss_dssp EEEEEEECCTTSSHHHHTCCTTCCEEEESSCBGGGCCHHHHHHHHTS---SEEEEEEEEC
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhC---CcEEEEEEEC
Confidence 36899999999999999999999999999999999877788888874 3777877764
No 171
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=98.64 E-value=6.9e-08 Score=77.25 Aligned_cols=72 Identities=21% Similarity=0.312 Sum_probs=54.8
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEe
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 176 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r 176 (406)
.++|+.+..... ...+++|..|.++|||+++| |++||+|++|||+++...+..++..+++... ..+.++|.+
T Consensus 36 ~~lG~~l~~~~~---~~~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~~ 108 (114)
T 2gzv_A 36 NLIGISIGGGAQ---YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK-GEVTIHYNK 108 (114)
T ss_dssp SCCSEEEEECCC-----CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-SEEEEEEEC
T ss_pred CcEeEEEEeCCC---CCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEe
Confidence 347777754311 12368999999999999999 9999999999999996666788888887543 457777754
No 172
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=98.63 E-value=1.8e-07 Score=82.04 Aligned_cols=77 Identities=29% Similarity=0.440 Sum_probs=59.8
Q ss_pred eeeEEEEeeccCC--CCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeC
Q 015469 101 TGVGLSIGYPTAS--DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 177 (406)
Q Consensus 101 ~g~g~~~~~~~~~--~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~ 177 (406)
.++|+.+...... .....+++|..|.++|||+++| |++||+|++|||+++.++...+....++. .++.+.+++.|+
T Consensus 16 ~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~r~ 94 (196)
T 3gsl_A 16 SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE-AGSIVRLYVMRR 94 (196)
T ss_dssp TBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT-SCSEEEEEEEEE
T ss_pred CCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCcEEEEEEec
Confidence 3577777542110 0113479999999999999999 99999999999999999877776666654 578999999886
Q ss_pred C
Q 015469 178 A 178 (406)
Q Consensus 178 g 178 (406)
+
T Consensus 95 ~ 95 (196)
T 3gsl_A 95 K 95 (196)
T ss_dssp C
T ss_pred C
Confidence 5
No 173
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=98.62 E-value=1.4e-07 Score=72.17 Aligned_cols=71 Identities=20% Similarity=0.258 Sum_probs=58.9
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCC-CCCCcEEEEEEe
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRS 176 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~-~~g~~v~l~v~r 176 (406)
.++|+.+.-. ..+..+|..+.++|||++.| |++||+|++|||+++..++..++.++|+. +.|.+++|++.+
T Consensus 16 ~~LG~tI~~~-----g~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~~~L~lv~ 88 (95)
T 3gge_A 16 DSLGLTITDN-----GVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIE 88 (95)
T ss_dssp SCCCEEEECS-----SSSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred CCceEEEEcC-----CCCcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCEEEEEEEC
Confidence 4678887522 14568899999999999998 99999999999999999999999999986 356777777654
No 174
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=2.2e-08 Score=77.55 Aligned_cols=59 Identities=24% Similarity=0.407 Sum_probs=51.9
Q ss_pred CcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCC
Q 015469 118 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 178 (406)
Q Consensus 118 ~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g 178 (406)
.+++|..|.++|||+ +||++||+|++|||+++.+....++..+++. .++++.|+|.|++
T Consensus 31 ~~~~V~~V~~~spA~-agL~~GD~Il~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~ 89 (96)
T 2edv_A 31 LPLTVVAVTAGGSAH-GKLFPGDQILQMNNEPAEDLSWERAVDILRE-AEDSLSITVVRCT 89 (96)
T ss_dssp SSCBCCCBCSSSSST-TTSCTTCBEEEESSCBSTTCCHHHHHHHHHH-CSSCEEEEEEECC
T ss_pred CCeEEEEECCCCchh-hCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence 478899999999995 9999999999999999998877787777765 6889999998865
No 175
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=98.61 E-value=8.5e-08 Score=92.17 Aligned_cols=71 Identities=30% Similarity=0.493 Sum_probs=62.5
Q ss_pred CcEEEEEeCCCChhhhcCCCC-----------CCEEEEECCEecCCCCHHHHHHHhCC-CCCCcEEEEEEeCCeeEEEEE
Q 015469 118 AGLVVISSMPGGPANRAGILS-----------GDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAEIRHLAL 185 (406)
Q Consensus 118 ~~~~V~~v~~~spA~~aGl~~-----------GD~I~~Ing~~v~~~~~~~~~~~l~~-~~g~~v~l~v~r~g~~~~~~v 185 (406)
.+++|..|.++|||+++||++ ||+|++|||+++.++ .++...+.. ++|++++++|.|+|+.+++++
T Consensus 251 ~Gv~V~~V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ing~~v~~~--~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v 328 (348)
T 3qo6_A 251 SGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNG--SDLYRILDQCKVGDEVTVEVLRGDHKEKISV 328 (348)
T ss_dssp SSEEEEECCSSSHHHHHTCCCCEECSSSCEECCCEECEETTBCCSSS--HHHHHHHTTCCTTCEEEEEEECSSSEEEEEE
T ss_pred ceEEEEEecCCChHHHcCCccccccccCCCCCCCEEEEECCEEeCCH--HHHHHHHHhCCCcCEEEEEEEECCEEEEEEE
Confidence 579999999999999999999 999999999999997 778777754 578999999999999988888
Q ss_pred Eeecc
Q 015469 186 TREKV 190 (406)
Q Consensus 186 ~~~~~ 190 (406)
+....
T Consensus 329 ~l~~~ 333 (348)
T 3qo6_A 329 TLEPK 333 (348)
T ss_dssp ECEEC
T ss_pred EEccC
Confidence 76543
No 176
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=98.61 E-value=2.3e-09 Score=95.73 Aligned_cols=87 Identities=18% Similarity=0.265 Sum_probs=67.8
Q ss_pred eeeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcE-EEEEEeCC
Q 015469 100 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPV-ELTVRSGA 178 (406)
Q Consensus 100 ~~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v-~l~v~r~g 178 (406)
..|+|+.+.... ...+++|..|.++|||+++||++||+|++|||+++..+...++..++... |+.+ .++|.|+|
T Consensus 19 ~~glG~~l~~~~----~~~gv~V~~V~~gSpA~~aGL~~GD~Il~VNG~~V~~~s~~dl~~~l~~~-g~~v~~l~V~R~g 93 (216)
T 2krg_A 19 PSGYGFNLHSDK----SKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAG-GDETKLLVVDRET 93 (216)
T ss_dssp SSSSCEEECCCS----SSCSCBEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCTHHHHHHHHHH-CSEEEEEECCHHH
T ss_pred CCCceEEEEecC----CCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhc-CCeEEEEEEEECC
Confidence 357888876431 12378999999999999999999999999999999966668888887754 7788 88888887
Q ss_pred eeE--EEEEEeeccc
Q 015469 179 EIR--HLALTREKVS 191 (406)
Q Consensus 179 ~~~--~~~v~~~~~~ 191 (406)
... ++++++..+.
T Consensus 94 ~~~~~~v~v~p~~~~ 108 (216)
T 2krg_A 94 DEFFKKCRVIPSQEH 108 (216)
T ss_dssp HHHHHHHTCCCCGGG
T ss_pred EEEEEEEEEEEeeee
Confidence 765 5555555443
No 177
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=98.60 E-value=1.9e-07 Score=82.36 Aligned_cols=74 Identities=23% Similarity=0.230 Sum_probs=60.2
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhc-CCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCC
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRA-GILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 178 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~a-Gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g 178 (406)
.++|+.+..... ...+++|..|.++|||+++ ||++||+|++|||+++.+++..++..++.. .++++.+++.|++
T Consensus 19 ~~lG~~i~~~~~---~~~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~ 93 (200)
T 2qt5_A 19 TTLGLTVSGGID---KDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKN-VGERVVLEVEYEL 93 (200)
T ss_dssp CCCCEEEECCTT---SSSCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHT-CCSEEEEEEEEEC
T ss_pred CCCCEEEecccC---CCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEeccC
Confidence 467877753211 1346899999999999999 999999999999999999887888877764 4789999998865
No 178
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=98.58 E-value=7e-08 Score=93.98 Aligned_cols=72 Identities=24% Similarity=0.395 Sum_probs=62.5
Q ss_pred eeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCC-CCCCcEEEEEEeCC
Q 015469 102 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGA 178 (406)
Q Consensus 102 g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~-~~g~~v~l~v~r~g 178 (406)
++|+.+.... ..+++|..|.++|||+++||++||+|++|||+++.++...++..++.. ..|++++|++.|++
T Consensus 20 ~lG~~i~gg~-----~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v~l~v~r~~ 92 (391)
T 3tsz_A 20 SVGLRLAGGN-----DVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 92 (391)
T ss_dssp SCCEEEEEET-----TTEEEEEEECTTCHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECH
T ss_pred ceeEEEEecC-----CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeEEEEEeeCC
Confidence 5777775421 468999999999999999999999999999999998888999988876 68899999999875
No 179
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=98.58 E-value=1.8e-07 Score=89.03 Aligned_cols=68 Identities=34% Similarity=0.529 Sum_probs=60.0
Q ss_pred CCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCeeEEEEEEee
Q 015469 117 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLALTRE 188 (406)
Q Consensus 117 ~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~~~~~~v~~~ 188 (406)
..+++|..|.++|||+++||++||+|++|||+++.++ .++.+.+.. ++++.|+|.|+|+..++++++.
T Consensus 255 ~~gv~V~~V~~~spA~~aGl~~GDvI~~ing~~v~~~--~~l~~~l~~--~~~v~l~v~R~g~~~~~~v~~~ 322 (325)
T 1lcy_A 255 QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA--EDVYEAVRT--QSQLAVQIRRGRETLTLYVTPE 322 (325)
T ss_dssp SSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHTT--CSSEEEEEEETTEEEEEEECCE
T ss_pred CCCeEEEEeCcCChHHHCCCCCCCEEEEECCEEcCCH--HHHHHHHhC--CCeEEEEEEECCEEEEEEEEEe
Confidence 3579999999999999999999999999999999984 788888874 6899999999999888887643
No 180
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.58 E-value=3e-08 Score=78.96 Aligned_cols=77 Identities=23% Similarity=0.357 Sum_probs=61.1
Q ss_pred eeeEEEEeeccCC------CCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEE
Q 015469 101 TGVGLSIGYPTAS------DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELT 173 (406)
Q Consensus 101 ~g~g~~~~~~~~~------~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~ 173 (406)
.++|+.+...... .....+++|..|.++|||+++| |++||+|++|||+++.++...++..+++. .++.+.|+
T Consensus 21 ~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~g~~v~l~ 99 (111)
T 1uju_A 21 ERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRS-VGDTLTVL 99 (111)
T ss_dssp CCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSS-CSSEEEEC
T ss_pred CccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEE
Confidence 4678877532110 0123468999999999999999 99999999999999998778888888876 67888888
Q ss_pred EEeCC
Q 015469 174 VRSGA 178 (406)
Q Consensus 174 v~r~g 178 (406)
|.|+.
T Consensus 100 v~r~~ 104 (111)
T 1uju_A 100 VCDGF 104 (111)
T ss_dssp CCCCC
T ss_pred EEECC
Confidence 87754
No 181
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.56 E-value=4.1e-08 Score=78.32 Aligned_cols=73 Identities=27% Similarity=0.444 Sum_probs=58.4
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCC
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 178 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g 178 (406)
.++|+.+.... ...+++|..|.++|||+++| |++||+|++|||+++.++...++..++.. .+..+.++|.|++
T Consensus 26 ~glG~~l~~~~----~~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~~ 99 (113)
T 1um7_A 26 TGLGFNIVGGE----DGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKR-AGQSVTIVAQYRP 99 (113)
T ss_dssp SCSSBCCBCCS----TTCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHS-CCSEEEEEEECCH
T ss_pred CcccEEEEecc----CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCcEEEEEEECc
Confidence 46777664321 13578899999999999999 99999999999999999877777777763 5778888887754
No 182
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=97.96 E-value=8.1e-09 Score=82.45 Aligned_cols=70 Identities=27% Similarity=0.460 Sum_probs=52.0
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhh-cCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEE
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANR-AGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTV 174 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~-aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 174 (406)
.++|+.+..... ...+++|..|.++|||++ +||++||+|++|||+++.+.+..++..+++. .+.+++|+|
T Consensus 39 ~glG~~l~~g~~---~~~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~v~~~~~~~~~~~l~~-~~~~v~l~V 109 (112)
T 2lob_A 39 EGLGISITGGKE---HGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQ-QRGEIEFEV 109 (112)
Confidence 467776643210 123689999999999999 8999999999999999977666777777764 334466655
No 183
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=98.53 E-value=1.4e-07 Score=82.59 Aligned_cols=79 Identities=27% Similarity=0.349 Sum_probs=61.4
Q ss_pred eeEEEEeeccCC--CCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCC
Q 015469 102 GVGLSIGYPTAS--DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 178 (406)
Q Consensus 102 g~g~~~~~~~~~--~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g 178 (406)
++|+.+...... .....+++|..|.++|||+++| |++||+|++|||+++.+++..++...++. .++.+.|+|.|++
T Consensus 112 ~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~ 190 (196)
T 3gsl_A 112 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKN-TYDVVYLKVAKPS 190 (196)
T ss_dssp BSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHS-CCEEEEEEEEEES
T ss_pred CceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHc-CCCeEEEEEeCCC
Confidence 567666432110 0112468999999999999999 99999999999999999777888888864 5788999998877
Q ss_pred eeE
Q 015469 179 EIR 181 (406)
Q Consensus 179 ~~~ 181 (406)
...
T Consensus 191 ~~~ 193 (196)
T 3gsl_A 191 NAE 193 (196)
T ss_dssp CCC
T ss_pred Ccc
Confidence 644
No 184
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=98.51 E-value=1.4e-07 Score=84.00 Aligned_cols=68 Identities=22% Similarity=0.364 Sum_probs=53.3
Q ss_pred CCcEEEEEeCCCChhhhcCCCCC-CEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCC--eeEEEEE
Q 015469 117 SAGLVVISSMPGGPANRAGILSG-DVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA--EIRHLAL 185 (406)
Q Consensus 117 ~~~~~V~~v~~~spA~~aGl~~G-D~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g--~~~~~~v 185 (406)
..+++|..|.++|||+++||++| |+|++|||+++.++. +....++....++++.++|.|++ +..++++
T Consensus 15 ~~G~~V~~V~~~SpA~~AGL~~G~D~I~~ing~~v~~~~-~~~~~~~~~~~g~~v~l~v~R~~~~~~~~v~l 85 (209)
T 3rle_A 15 TEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDN-DTLKDLLKANVEKPVKMLIYSSKTLELRETSV 85 (209)
T ss_dssp SEEEEEEEECTTSHHHHTTCCTTTEEEEEETTEECCSSS-SHHHHHHHHTTTSCEEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEEECCCCHHHHCCCCcCCeEEEEECCEECcCHH-HHHHHHHhcCCCCEEEEEEEecCCceEEEEEE
Confidence 34789999999999999999999 999999999999874 22223444456899999998865 4444544
No 185
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=98.51 E-value=2.4e-07 Score=82.08 Aligned_cols=70 Identities=17% Similarity=0.280 Sum_probs=57.9
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeC
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 177 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~ 177 (406)
.++|+.+... ..+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++. .+.++.|+|.|.
T Consensus 125 ~~lG~~~~~~------~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~L~V~R~ 195 (206)
T 3r0h_A 125 KELGLSLSPN------EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKG-ANGKVSMEVTRP 195 (206)
T ss_dssp CCCCEEEEEC------SSCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHT-CCSEEEEEEEEE
T ss_pred CccCeEEEcC------CceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence 3567776533 3579999999999999999 99999999999999999877888888865 456888888763
No 186
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=98.50 E-value=2.8e-07 Score=91.49 Aligned_cols=69 Identities=26% Similarity=0.358 Sum_probs=60.5
Q ss_pred CcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCC-CCCCcEEEEEEeCCeeEEEEEEee
Q 015469 118 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAEIRHLALTRE 188 (406)
Q Consensus 118 ~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~-~~g~~v~l~v~r~g~~~~~~v~~~ 188 (406)
.+++|..|.++|||+++||++||+|++|||+++.++ .++...+.. ..|++++++|.|+++..+++++..
T Consensus 282 ~G~~V~~V~~~spA~~aGL~~GDvI~~vnG~~v~~~--~~l~~~l~~~~~g~~v~l~V~R~g~~~~~~v~l~ 351 (451)
T 3pv2_A 282 QGALVSQVNPNSPAELAGLKAGDIITQINDTKITQA--TQVKTTISLLRVGSTVKIIVERDNKPLTLSAVVT 351 (451)
T ss_dssp CCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECB
T ss_pred ceEEEEecCCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEc
Confidence 579999999999999999999999999999999985 667666653 678999999999999888877654
No 187
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=98.47 E-value=4.9e-07 Score=89.50 Aligned_cols=72 Identities=21% Similarity=0.397 Sum_probs=61.2
Q ss_pred CCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCC-CCCCcEEEEEEeCCeeEEEEEEeecc
Q 015469 117 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAEIRHLALTREKV 190 (406)
Q Consensus 117 ~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~-~~g~~v~l~v~r~g~~~~~~v~~~~~ 190 (406)
..+++|..|.++|||+++||++||+|++|||+++.++ .++...+.. ..|++++++|.|+|+..+++++....
T Consensus 262 ~~G~~V~~V~~~spA~~aGL~~GD~I~~vnG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~ 334 (436)
T 4a8c_A 262 QRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTS 334 (436)
T ss_pred CcceEEEEECCCChHHHCCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECCC
Confidence 3578999999999999999999999999999999986 666666553 46899999999999988888765443
No 188
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=98.46 E-value=1.5e-07 Score=86.24 Aligned_cols=76 Identities=24% Similarity=0.346 Sum_probs=61.9
Q ss_pred eeeeEEEEeeccCCCCCCCcEEEEEeCCCChhhh-cCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCC
Q 015469 100 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANR-AGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 178 (406)
Q Consensus 100 ~~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~-aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g 178 (406)
..++||.+..... ...+++|..|.++|||++ +||++||+|++|||+++.++...++..+++.. ++++.|+|.|.+
T Consensus 88 ~~glGf~I~gg~d---~~~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~-g~~V~L~V~R~~ 163 (263)
T 1z87_A 88 AGGLGISIKGGRE---NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT-GKEVVLEVKYMK 163 (263)
T ss_dssp TCCCCCEEEEETT---TTEEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHHC-CSCCCEEEECCS
T ss_pred CCCEeEEEeeccC---CCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHhcC-CCeEEEEEEeCc
Confidence 3578888754211 134799999999999999 79999999999999999999888998888764 678999998754
Q ss_pred e
Q 015469 179 E 179 (406)
Q Consensus 179 ~ 179 (406)
+
T Consensus 164 ~ 164 (263)
T 1z87_A 164 E 164 (263)
T ss_dssp S
T ss_pred c
Confidence 4
No 189
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=98.46 E-value=2.6e-07 Score=82.23 Aligned_cols=67 Identities=22% Similarity=0.286 Sum_probs=55.3
Q ss_pred CcEEEEEeCCCChhhhcCCCC-CCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCC--eeEEEEEEe
Q 015469 118 AGLVVISSMPGGPANRAGILS-GDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA--EIRHLALTR 187 (406)
Q Consensus 118 ~~~~V~~v~~~spA~~aGl~~-GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g--~~~~~~v~~ 187 (406)
.+++|..|.++|||+++||++ ||+|++|||+ +.++ .++.+.+....++++.++|.|++ ...++++++
T Consensus 112 ~Gv~V~~V~~~spA~~aGl~~~GD~I~~ing~-v~~~--~~l~~~l~~~~g~~v~l~v~r~~~~~~~~v~l~p 181 (209)
T 3rle_A 112 NVWHVLEVESNSPAALAGLRPHSDYIIGADTV-MNES--EDLFSLIETHEAKPLKLYVYNTDTDNCREVIITP 181 (209)
T ss_dssp SCEEEEEECTTSHHHHHTCCTTTEEEEEESSC-CCSS--SCHHHHHHHTTTSCEEEEEEETTTTEEEEEEECC
T ss_pred cceEEEEeCCCChHHHCCCCCCCCEEEECCCE-eCCH--HHHHHHHHhCCCCeEEEEEEECCceEEEEEEEEe
Confidence 578999999999999999999 9999999998 8775 56666666557899999998864 445666654
No 190
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=98.46 E-value=2.3e-07 Score=91.78 Aligned_cols=74 Identities=23% Similarity=0.396 Sum_probs=61.9
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCC-CCCCcEEEEEEeCCe
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAE 179 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~-~~g~~v~l~v~r~g~ 179 (406)
.++|+.+.... ..+++|..|.++|||+++||++||+|++|||+++.+....++..+++. +.|++++|+|.|+++
T Consensus 11 ~~lG~~i~gg~-----~~Gi~V~~V~~gspA~~aGL~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~L~V~r~g~ 85 (468)
T 3shw_A 11 DSVGLRLAGGN-----DVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKD 85 (468)
T ss_dssp SSCCEEEEEET-----TTEEEEEEECSSSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECHH
T ss_pred CccceEEEccC-----cCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECCc
Confidence 35666664321 357999999999999999999999999999999999888898888875 478999999998653
No 191
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=98.45 E-value=2.8e-07 Score=81.30 Aligned_cols=63 Identities=27% Similarity=0.425 Sum_probs=55.9
Q ss_pred CcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCeeE
Q 015469 118 AGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIR 181 (406)
Q Consensus 118 ~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~~~ 181 (406)
.+++|..|.++|||+++| |++||+|++|||+++..++..++.++++. .++.+.|+|.|+++..
T Consensus 135 ~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~~ 198 (200)
T 2qt5_A 135 RPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQ-CGQEATLLIEYDVSVM 198 (200)
T ss_dssp EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT-TCSEEEEEEEEEEEC-
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECCccC
Confidence 478999999999999999 99999999999999996667899998887 7889999999876643
No 192
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=98.38 E-value=7.7e-07 Score=93.62 Aligned_cols=86 Identities=27% Similarity=0.432 Sum_probs=66.7
Q ss_pred eeeEEEEeeccCC--CCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeC
Q 015469 101 TGVGLSIGYPTAS--DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 177 (406)
Q Consensus 101 ~g~g~~~~~~~~~--~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~ 177 (406)
.|+||.+.--... .....+++|..|.++|||+++| |++||+|++|||+++.++...++..+++. .|+++.|+|.|+
T Consensus 70 ~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~ 148 (721)
T 2xkx_A 70 SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE-AGSIVRLYVMRR 148 (721)
T ss_pred CCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHhhc-cccccceEEEec
Confidence 5888887532110 0114579999999999999999 99999999999999999988888888874 578999999887
Q ss_pred Ce----eEEEEEEe
Q 015469 178 AE----IRHLALTR 187 (406)
Q Consensus 178 g~----~~~~~v~~ 187 (406)
+. ..++++.+
T Consensus 149 ~~~~~~~~~v~l~k 162 (721)
T 2xkx_A 149 KPPAEKVMEIKLIK 162 (721)
T ss_pred ccccccceeeeeee
Confidence 64 34555544
No 193
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=98.36 E-value=1.2e-06 Score=86.71 Aligned_cols=68 Identities=24% Similarity=0.391 Sum_probs=59.3
Q ss_pred CcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCeeEEEEEEee
Q 015469 118 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLALTRE 188 (406)
Q Consensus 118 ~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~~~~~~v~~~ 188 (406)
.+++|..|.++|||+++||++||+|++|||+++.++ +++.+.++... ..+.|+|.|+++...+++.+.
T Consensus 363 ~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~--~~~~~~l~~~~-~~v~l~v~R~g~~~~~~~~~~ 430 (436)
T 4a8c_A 363 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSI--AEMRKVLAAKP-AIIALQIVRGNESIYLLMRLE 430 (436)
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhCC-CeEEEEEEECCEEEEEEEEec
Confidence 478999999999999999999999999999999985 78888887644 489999999999888776654
No 194
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=98.33 E-value=6.6e-07 Score=78.64 Aligned_cols=75 Identities=31% Similarity=0.458 Sum_probs=60.1
Q ss_pred eeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCC
Q 015469 102 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 178 (406)
Q Consensus 102 g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g 178 (406)
.+|+.+....... ...+++|..|.++|||+++| |++||+|++|||+++.+.+..++.+++... +..+.|+|.|++
T Consensus 120 ~lG~~~~~~~~~~-~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~~ 195 (196)
T 1p1d_A 120 ELGITISSPSSRK-PGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQC-EDLVKLKIRKDE 195 (196)
T ss_dssp CCCCEEECSCSSS-TTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHC-TTCEEEEEECCC
T ss_pred CcCEEEECCCCCC-CCCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCEEEEEEEeCC
Confidence 4666664321110 13478999999999999999 999999999999999997678888888765 889999998875
No 195
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=98.33 E-value=1.1e-06 Score=87.22 Aligned_cols=65 Identities=20% Similarity=0.281 Sum_probs=58.0
Q ss_pred CcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCeeEEEEE
Q 015469 118 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLAL 185 (406)
Q Consensus 118 ~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~~~~~~v 185 (406)
.+++|..|.++|||+++||++||+|++|||+++.++ .++.+.++. .++.+.|+|.|+++...+++
T Consensus 386 ~Gv~V~~V~~gspA~~aGL~~GD~I~~Vng~~v~~~--~~~~~~l~~-~~~~v~l~v~R~g~~~~v~l 450 (451)
T 3pv2_A 386 IGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDV--KSLQTIAQE-KKKELLVQVLRGPGSMYLLV 450 (451)
T ss_dssp EEEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHTTS-SCSCEEEEEEETTEEEEEEE
T ss_pred CceEEEEECCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHhc-CCCeEEEEEEECCEEEEEEe
Confidence 468999999999999999999999999999999984 788888876 67899999999998877665
No 196
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=98.32 E-value=6.6e-08 Score=92.38 Aligned_cols=70 Identities=27% Similarity=0.473 Sum_probs=0.0
Q ss_pred CCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCeeEEEEEEeecc
Q 015469 117 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLALTREKV 190 (406)
Q Consensus 117 ~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~~~~~~v~~~~~ 190 (406)
..+++|..|.++|||+++||++||+|++|||+++.++ .++...++. +++++++|.|+|+..++++++...
T Consensus 253 ~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~--~~~v~l~v~R~g~~~~~~v~p~~~ 322 (332)
T 3num_A 253 ISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSA--NDVSDVIKR--ESTLNMVVRRGNEDIMITVIPEEI 322 (332)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CCceEEEEeccCCChHHcCCCCCCEEEEECCEECCCH--HHHHHHHhC--CCeEEEEEEECCEEEEEEEEEeee
Confidence 3578899999999999999999999999999999885 566666653 788999999999988888776543
No 197
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=98.20 E-value=5.1e-07 Score=89.56 Aligned_cols=67 Identities=25% Similarity=0.404 Sum_probs=58.4
Q ss_pred CcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCC-CCCCcEEEEEEeCCeeEEEEEE
Q 015469 118 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAEIRHLALT 186 (406)
Q Consensus 118 ~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~-~~g~~v~l~v~r~g~~~~~~v~ 186 (406)
.+++|..|.++|||+++||++||+|++|||+++.++ .++...+.. +.|++++++|.|+|+..+++++
T Consensus 286 ~G~~V~~V~~gspA~~AGL~~GDvI~~inG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~ 353 (448)
T 1ky9_A 286 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLRDGKQVNVNLE 353 (448)
T ss_dssp CSEECCCCTTCSSSTTTTCCTTCEECBSSSSBCCSS--HHHHHHTTSSBTTCCCEEEEESSSCEEECCCC
T ss_pred CceEEEEeccCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEE
Confidence 578999999999999999999999999999999997 677777765 4789999999999987666554
No 198
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=98.05 E-value=1.4e-05 Score=80.39 Aligned_cols=72 Identities=21% Similarity=0.293 Sum_probs=57.3
Q ss_pred CCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCC--------HHHHHHHh-CCCCCCcEEEEEEeCCeeEEEEEEe
Q 015469 117 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMG--------IYDAAERL-QGPEGSPVELTVRSGAEIRHLALTR 187 (406)
Q Consensus 117 ~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~--------~~~~~~~l-~~~~g~~v~l~v~r~g~~~~~~v~~ 187 (406)
..+++|..|.++|||+++ |++||+|++|||++|.+.. ...+..++ ..++|++++++|.|+|+.++++++.
T Consensus 276 ~~Gv~V~~V~~~spA~~a-l~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~~~~Gd~v~l~v~R~Gk~~~v~Vtl 354 (539)
T 4fln_A 276 NEGVLVRRVEPTSDASKV-LKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAGEHKKVQVVL 354 (539)
T ss_dssp SBCEEEEEECTTSGGGGT-CCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHTSCTTCEEEEEEEETTEEEEEEEEC
T ss_pred cCceeeecccCCChHHhC-ccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHcCCCCCEEEEEEEECCEEEEEEEEE
Confidence 458999999999999876 9999999999999997531 01123333 3458999999999999999998875
Q ss_pred ec
Q 015469 188 EK 189 (406)
Q Consensus 188 ~~ 189 (406)
..
T Consensus 355 ~~ 356 (539)
T 4fln_A 355 RP 356 (539)
T ss_dssp BC
T ss_pred cc
Confidence 43
No 199
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=97.87 E-value=2.9e-05 Score=81.59 Aligned_cols=73 Identities=26% Similarity=0.441 Sum_probs=59.3
Q ss_pred eeeEEEEeeccCCCCCCCcEEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCC
Q 015469 101 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 178 (406)
Q Consensus 101 ~g~g~~~~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g 178 (406)
.++|+.+.... ...+++|..|.++|||+++| |++||+|++|||+++.+.+..++..+++. .+.++.|+|.|+.
T Consensus 318 ~~lG~~i~~~~----~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~~~~l~~-~~~~v~L~v~r~~ 391 (721)
T 2xkx_A 318 TGLGFNIVGGE----DGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN-AGQTVTIIAQYKP 391 (721)
T ss_pred CCccEEEeccC----CCCCeEEEEeCCCChHHhcCCCccCCEEEEECCEECCCCCHHHHHHHHHh-cCCeEEEEEEeCc
Confidence 35677664221 13579999999999999999 99999999999999999878889888875 4678899988754
No 200
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=97.87 E-value=1.8e-06 Score=85.55 Aligned_cols=65 Identities=23% Similarity=0.424 Sum_probs=0.0
Q ss_pred CcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEeCCeeEEEEE
Q 015469 118 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLAL 185 (406)
Q Consensus 118 ~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~~~~~~v 185 (406)
.+++|..|.++|||+++||++||+|++|||+++.++ .++.+.++...+ .+.|+|.|+++..++++
T Consensus 383 ~gv~V~~V~~gspA~~aGL~~GDiI~~vng~~v~~~--~~l~~~l~~~~~-~v~l~v~R~g~~~~~~l 447 (448)
T 1ky9_A 383 QGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AELRKVLDSKPS-VLALNIQRGDSTIYLLM 447 (448)
T ss_dssp --------------------------------------------------------------------
T ss_pred CeEEEEEecCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHcCCC-eEEEEEEECCEEEEEEe
Confidence 468899999999999999999999999999999985 677777776554 88899999888766544
No 201
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=97.72 E-value=6.7e-06 Score=70.12 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=34.3
Q ss_pred EEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHH
Q 015469 121 VVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDA 158 (406)
Q Consensus 121 ~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~ 158 (406)
+|..+.++|||+++||++||+|++|||+++.++....+
T Consensus 110 ~v~~v~~~s~a~~aGl~~GD~I~~ing~~v~~~~~~~v 147 (166)
T 1w9e_A 110 KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQI 147 (166)
T ss_dssp EEEEECTTSHHHHTTCCSSEEEEEETTEECTTCCHHHH
T ss_pred EEEEEccCCHHHHcCCCCCCEEEEECCEECCCCChHHH
Confidence 79999999999999999999999999999999854443
No 202
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=97.42 E-value=2e-05 Score=76.56 Aligned_cols=55 Identities=22% Similarity=0.341 Sum_probs=0.0
Q ss_pred EEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEEe
Q 015469 121 VVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 176 (406)
Q Consensus 121 ~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r 176 (406)
+|..|.++|||+++||++||+|++|||+++.+.+..++...++. .+..+.|++.+
T Consensus 318 ~I~~V~~gs~A~~aGL~~GD~Il~VNg~~v~~~s~~~~~~~l~~-~~~~v~L~V~p 372 (388)
T 3suz_A 318 IICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSN-SVGEIHMKTMP 372 (388)
T ss_dssp --------------------------------------------------------
T ss_pred EEEEeecCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEe
Confidence 78899999999999999999999999999987666777777764 45666666643
No 203
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=96.43 E-value=0.006 Score=61.31 Aligned_cols=57 Identities=5% Similarity=0.019 Sum_probs=49.8
Q ss_pred CCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHhCCCCCCcEEEEEE
Q 015469 117 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVR 175 (406)
Q Consensus 117 ~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~ 175 (406)
..+++|+.|.++++|..+|+++||+|++|||++|.+ ..++.+++....++.+.+.+.
T Consensus 414 ~~gVvvs~V~~~s~a~~~g~~~gdiI~~vNg~~V~s--~~~l~~~l~~~k~~~l~~~~~ 470 (539)
T 4fln_A 414 EQIVILSQVLANEVNIGYEDMNNQQVLKFNGIPIRN--IHHLAHLIDMCKDKYLVFEFE 470 (539)
T ss_dssp CCCEEEEEECCCGGGTTCSSCCSEEEEEETTEECCS--HHHHHHHHHTCCSSEEEEEET
T ss_pred ceEEEEEEecCCchhhhcCCCCCCEEEeECCEEcCC--HHHHHHHHHHcCCCeEEEEEC
Confidence 346899999999999999999999999999999999 589999998777777766654
No 204
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A
Probab=90.51 E-value=0.93 Score=40.14 Aligned_cols=83 Identities=14% Similarity=0.193 Sum_probs=64.0
Q ss_pred CCceEEEEcCc-cccchHHHHHHHHHHHhcCCCCeEEEEeCCCCCCChHHHHHHHHhhccCCcEEEEEcCCCceeeeecC
Q 015469 209 SPRIGYIKLTS-FNQNASGAVREAIDTLRSNSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTD 287 (406)
Q Consensus 209 ~~~igyl~i~~-f~~~~~~~~~~~~~~~~~~~~~~lIiDlR~N~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (406)
.++|+.|.+.. ++....+.+.++|..+.+.+++.+||.+- .+||++..+..+...+.
T Consensus 7 ~~~V~vI~i~g~I~~~~~~~l~~~l~~a~~~~~~~Ivl~in-spGG~v~~~~~i~~~i~--------------------- 64 (230)
T 3viv_A 7 KNIVYVAQIKGQITSYTYDQFDRYITIAEQDNAEAIIIELD-TPGGRADAMMNIVQRIQ--------------------- 64 (230)
T ss_dssp CCEEEEEEEESCBCHHHHHHHHHHHHHHHHTTCSEEEEEEE-BSCEEHHHHHHHHHHHH---------------------
T ss_pred CCeEEEEEEeCEECHHHHHHHHHHHHHHhcCCCCEEEEEEe-CCCcCHHHHHHHHHHHH---------------------
Confidence 35788888865 44556678888888887778999999874 78898887766666542
Q ss_pred CCCccCCCCCEEEEE---cCCCccHHHHHHHHHh
Q 015469 288 GTDALAASEPLAVLV---NKGTASASEILAGALK 318 (406)
Q Consensus 288 ~~~~~~~~~~v~vLv---d~~t~SaaE~~a~~lk 318 (406)
..++||+..+ ++.++|++-.++.+-.
T Consensus 65 -----~~~~PVia~v~p~~G~AasaG~~ia~a~d 93 (230)
T 3viv_A 65 -----QSKIPVIIYVYPPGASAASAGTYIALGSH 93 (230)
T ss_dssp -----TCSSCEEEEECSTTCEEETHHHHHHHTSS
T ss_pred -----hCCCCEEEEEecCCCEEhHHHHHHHHhcC
Confidence 1347899999 9999999999988765
No 205
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=87.39 E-value=0.91 Score=39.84 Aligned_cols=81 Identities=19% Similarity=0.230 Sum_probs=60.1
Q ss_pred ceEEEEcCccccchHHHHHHHHHHHhc-CCCCeEEEEeCCCCCCChHHHHHHHHhhccCCcEEEEEcCCCceeeeecCCC
Q 015469 211 RIGYIKLTSFNQNASGAVREAIDTLRS-NSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGT 289 (406)
Q Consensus 211 ~igyl~i~~f~~~~~~~~~~~~~~~~~-~~~~~lIiDlR~N~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (406)
+|.+|. ...+....+.+.+.|..+.+ .+.+.++|.+ +-|||++..+..+...+.
T Consensus 46 rii~l~-g~I~~~~a~~i~~~L~~l~~~~~~k~I~l~I-nSPGG~v~ag~~I~~~i~----------------------- 100 (218)
T 1y7o_A 46 RIIMLT-GPVEDNMANSVIAQLLFLDAQDSTKDIYLYV-NTPGGSVSAGLAIVDTMN----------------------- 100 (218)
T ss_dssp TEEEEE-SCBCHHHHHHHHHHHHHHHHHCTTSCEEEEE-EECCBCHHHHHHHHHHHH-----------------------
T ss_pred CEEEEe-CEECHHHHHHHHHHHHHHHhcCCCCCEEEEE-ECcCCCHHHHHHHHHHHH-----------------------
Confidence 566664 22444567778888877765 3589999999 678999988877776541
Q ss_pred CccCCCCCEEEEEcCCCccHHHHHHHHHhc
Q 015469 290 DALAASEPLAVLVNKGTASASEILAGALKD 319 (406)
Q Consensus 290 ~~~~~~~~v~vLvd~~t~SaaE~~a~~lk~ 319 (406)
..++||++.+++.++|++-.++.+-..
T Consensus 101 ---~~~~pV~t~v~G~AaS~G~~Ia~a~d~ 127 (218)
T 1y7o_A 101 ---FIKADVQTIVMGMAASMGTVIASSGAK 127 (218)
T ss_dssp ---HSSSCEEEEEEEEEETHHHHHHTTSCT
T ss_pred ---hcCCCEEEEEccEeHHHHHHHHHcCCc
Confidence 123689999999999999998887644
No 206
>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A
Probab=84.90 E-value=2 Score=36.84 Aligned_cols=82 Identities=15% Similarity=0.194 Sum_probs=60.0
Q ss_pred CceEEEEcCccccchHHHHHHHHHHHhc-CCCCeEEEEeCCCCCCChHHHHHHHHhhccCCcEEEEEcCCCceeeeecCC
Q 015469 210 PRIGYIKLTSFNQNASGAVREAIDTLRS-NSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDG 288 (406)
Q Consensus 210 ~~igyl~i~~f~~~~~~~~~~~~~~~~~-~~~~~lIiDlR~N~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (406)
.++.+|.-. ..+...+.+.+.|..+.+ .+.+.++|.+ +-|||+...+..+...+..
T Consensus 26 ~rii~l~g~-I~~~~a~~i~~~L~~l~~~~~~~~I~l~I-nSPGG~v~a~~~I~~~i~~--------------------- 82 (193)
T 1yg6_A 26 ERVIFLTGQ-VEDHMANLIVAQMLFLEAENPEKDIYLYI-NSPGGVITAGMSIYDTMQF--------------------- 82 (193)
T ss_dssp TTEEEEESS-BCHHHHHHHHHHHHHHHHHCSSSCEEEEE-EECCBCHHHHHHHHHHHHH---------------------
T ss_pred CCEEEEcCE-EcHHHHHHHHHHHHHHHhcCCCCCEEEEE-ECcCCCHHHHHHHHHHHHh---------------------
Confidence 366666432 334456778888877654 3589999999 6789999988888776531
Q ss_pred CCccCCCCCEEEEEcCCCccHHHHHHHHHhc
Q 015469 289 TDALAASEPLAVLVNKGTASASEILAGALKD 319 (406)
Q Consensus 289 ~~~~~~~~~v~vLvd~~t~SaaE~~a~~lk~ 319 (406)
.+.||++.+++.++|+|-+++.+-..
T Consensus 83 -----~~~pV~~~v~g~AaS~g~~Ia~ag~~ 108 (193)
T 1yg6_A 83 -----IKPDVSTICMGQAASMGAFLLTAGAK 108 (193)
T ss_dssp -----SSSCEEEEEEEEEETHHHHHHHTSCT
T ss_pred -----cCCCEEEEEeeeHHHHHHHHHHCCCc
Confidence 22579999999999999999887543
No 207
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A
Probab=83.16 E-value=1.3 Score=38.40 Aligned_cols=71 Identities=20% Similarity=0.208 Sum_probs=54.9
Q ss_pred cchHHHHHHHHHHHhc-CCCCeEEEEeCCCCCCChHHHHHHHHhhccCCcEEEEEcCCCceeeeecCCCCccCCCCCEEE
Q 015469 222 QNASGAVREAIDTLRS-NSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGTDALAASEPLAV 300 (406)
Q Consensus 222 ~~~~~~~~~~~~~~~~-~~~~~lIiDlR~N~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 300 (406)
....+.+.+.|..+.+ .+.+.++|.+ +-|||+...+..+...+.. .++||++
T Consensus 38 ~~~a~~i~~~L~~~~~~~~~k~I~l~I-nSPGG~v~a~~~I~~~i~~--------------------------~~~pV~~ 90 (208)
T 2cby_A 38 DEIANRLCAQILLLAAEDASKDISLYI-NSPGGSISAGMAIYDTMVL--------------------------APCDIAT 90 (208)
T ss_dssp HHHHHHHHHHHHHHHHHCSSSCEEEEE-EECCBCHHHHHHHHHHHHH--------------------------CSSCEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCCEEEEE-ECCCCCHHHHHHHHHHHHh--------------------------cCCCEEE
Confidence 4456778888877764 4689999999 6788899888877776521 2368999
Q ss_pred EEcCCCccHHHHHHHHHhc
Q 015469 301 LVNKGTASASEILAGALKD 319 (406)
Q Consensus 301 Lvd~~t~SaaE~~a~~lk~ 319 (406)
.+++.++|+|-+++.+-..
T Consensus 91 ~v~g~AaS~g~~Ia~agd~ 109 (208)
T 2cby_A 91 YAMGMAASMGEFLLAAGTK 109 (208)
T ss_dssp EEEEEEETHHHHHHHTSCT
T ss_pred EECcEeHHHHHHHHhCCCc
Confidence 9999999999999987643
No 208
>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1
Probab=79.98 E-value=2 Score=37.48 Aligned_cols=81 Identities=19% Similarity=0.251 Sum_probs=57.3
Q ss_pred ceEEEEcCccccchHHHHHHHHHHHhcCCCCeEEEEeCCCCCCChHHHHHHHHhhccCCcEEEEEcCCCceeeeecCCCC
Q 015469 211 RIGYIKLTSFNQNASGAVREAIDTLRSNSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGTD 290 (406)
Q Consensus 211 ~igyl~i~~f~~~~~~~~~~~~~~~~~~~~~~lIiDlR~N~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (406)
.+-||.-+ ..+...+.+.+.|..+...+.+.++|.+ +-|||++..+..|...+..
T Consensus 40 riI~l~G~-I~~~~a~~i~~~L~~l~~~~~k~I~l~I-NSPGGsv~a~~~I~~~i~~----------------------- 94 (215)
T 2f6i_A 40 RIIYLTDE-INKKTADELISQLLYLDNINHNDIKIYI-NSPGGSINEGLAILDIFNY----------------------- 94 (215)
T ss_dssp TEEEECSC-BCHHHHHHHHHHHHHHHHHCCSCEEEEE-EECCBCHHHHHHHHHHHHH-----------------------
T ss_pred eEEEEccE-ECHHHHHHHHHHHHHHHhCCCCcEEEEE-ECCCCCHHHHHHHHHHHHh-----------------------
Confidence 45444322 2334566777777777554449999988 6789999988888876531
Q ss_pred ccCCCCCEEEEEcCCCccHHHHHHHHHhc
Q 015469 291 ALAASEPLAVLVNKGTASASEILAGALKD 319 (406)
Q Consensus 291 ~~~~~~~v~vLvd~~t~SaaE~~a~~lk~ 319 (406)
.+.||++.+.+.++|+|-+++.+-..
T Consensus 95 ---~~~pV~t~v~g~AAS~g~~Ia~agd~ 120 (215)
T 2f6i_A 95 ---IKSDIQTISFGLVASMASVILASGKK 120 (215)
T ss_dssp ---SSSCEEEEEEEEECHHHHHHHHTSCT
T ss_pred ---cCCCEEEEEeeEhHhHHHHHHHcCCc
Confidence 22478889999999999998887644
No 209
>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A
Probab=75.27 E-value=3.5 Score=35.63 Aligned_cols=80 Identities=18% Similarity=0.205 Sum_probs=57.0
Q ss_pred ceEEEEcCccccchHHHHHHHHHHHhc-CCCCeEEEEeCCCCCCChHHHHHHHHhhccCCcEEEEEcCCCceeeeecCCC
Q 015469 211 RIGYIKLTSFNQNASGAVREAIDTLRS-NSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGT 289 (406)
Q Consensus 211 ~igyl~i~~f~~~~~~~~~~~~~~~~~-~~~~~lIiDlR~N~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (406)
+|-||.- ...+...+.+.+.|..+.+ ...+.++|-+ +-|||++..+..+...+..
T Consensus 28 riI~l~g-~I~~~~a~~i~~~L~~l~~~~~~~~I~l~I-nSPGG~v~~~~~I~~~i~~---------------------- 83 (203)
T 3qwd_A 28 RIIMLGS-QIDDNVANSIVSQLLFLQAQDSEKDIYLYI-NSPGGSVTAGFAIYDTIQH---------------------- 83 (203)
T ss_dssp TEEEECS-CBCHHHHHHHHHHHHHHHHHCSSSCEEEEE-EECCBCHHHHHHHHHHHHH----------------------
T ss_pred CEEEEcC-EECHHHHHHHHHHHHHHHhcCCCCCEEEEE-eCCCCCHHHHHHHHHHHHH----------------------
Confidence 5555542 2334456777777777765 3488899988 5788999888877776521
Q ss_pred CccCCCCCEEEEEcCCCccHHHHHHHHHh
Q 015469 290 DALAASEPLAVLVNKGTASASEILAGALK 318 (406)
Q Consensus 290 ~~~~~~~~v~vLvd~~t~SaaE~~a~~lk 318 (406)
.+.||++.+++.++|+|-+++.+-.
T Consensus 84 ----~~~~V~t~~~G~AaSag~~i~~ag~ 108 (203)
T 3qwd_A 84 ----IKPDVQTICIGMAASMGSFLLAAGA 108 (203)
T ss_dssp ----SSSCEEEEEEEEEETHHHHHHHTSC
T ss_pred ----hcCCcEEEEeeeehhHHHHHHHcCC
Confidence 2367999999999999998886643
No 210
>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1
Probab=72.54 E-value=4.5 Score=34.87 Aligned_cols=80 Identities=15% Similarity=0.199 Sum_probs=57.5
Q ss_pred ceEEEEcCccccchHHHHHHHHHHHhc-CCCCeEEEEeCCCCCCChHHHHHHHHhhccCCcEEEEEcCCCceeeeecCCC
Q 015469 211 RIGYIKLTSFNQNASGAVREAIDTLRS-NSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGT 289 (406)
Q Consensus 211 ~igyl~i~~f~~~~~~~~~~~~~~~~~-~~~~~lIiDlR~N~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (406)
+|-||.-+ ..+...+.+...|..+.+ ...+.++|-+ +-|||+...+..+...+..
T Consensus 31 riI~l~g~-I~~~~a~~i~~~L~~l~~~~~~~~I~l~I-NSpGG~v~~~~~I~~~i~~---------------------- 86 (201)
T 3p2l_A 31 RIVFLNGE-VNDHSANLVIAQLLFLESEDPDKDIYFYI-NSPGGMVTAGMGVYDTMQF---------------------- 86 (201)
T ss_dssp TEEEEESC-BCHHHHHHHHHHHHHHHHHCSSSCEEEEE-EECCBCHHHHHHHHHHHHH----------------------
T ss_pred CEEEEcCE-ECHHHHHHHHHHHHHHHhcCCCCCEEEEE-ECCCCCHHHHHHHHHHHHH----------------------
Confidence 56666532 234456777777777664 3588999988 6789999888877776521
Q ss_pred CccCCCCCEEEEEcCCCccHHHHHHHHHh
Q 015469 290 DALAASEPLAVLVNKGTASASEILAGALK 318 (406)
Q Consensus 290 ~~~~~~~~v~vLvd~~t~SaaE~~a~~lk 318 (406)
.+.||++.+.+.++|+|-+++.+-.
T Consensus 87 ----~~~~v~t~~~G~AaS~g~~i~~ag~ 111 (201)
T 3p2l_A 87 ----IKPDVSTICIGLAASMGSLLLAGGA 111 (201)
T ss_dssp ----SSSCEEEEEEEEEETHHHHHHHTSS
T ss_pred ----hCCCeEEEEcCEehhHHHHHHHcCc
Confidence 2257889999999999998887644
No 211
>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1
Probab=63.78 E-value=10 Score=34.26 Aligned_cols=80 Identities=18% Similarity=0.224 Sum_probs=55.7
Q ss_pred ceEEEEcCccccchHHHHHHHHHHHhc-CCCCeEEEEeCCCCCCChHHHHHHHHhhccCCcEEEEEcCCCceeeeecCCC
Q 015469 211 RIGYIKLTSFNQNASGAVREAIDTLRS-NSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGT 289 (406)
Q Consensus 211 ~igyl~i~~f~~~~~~~~~~~~~~~~~-~~~~~lIiDlR~N~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (406)
.|-+|.-. ..+...+.+.+.|..+.. .+.+.|+|.+ +-|||++..+..|...+..
T Consensus 83 rII~l~G~-I~d~~a~~iiaqL~~l~~ed~~k~I~L~I-NSPGGsV~ag~aIyd~I~~---------------------- 138 (277)
T 1tg6_A 83 RIVCVMGP-IDDSVASLVIAQLLFLQSESNKKPIHMYI-NSPGGVVTAGLAIYDTMQY---------------------- 138 (277)
T ss_dssp TEEEEESS-BCHHHHHHHHHHHHHHHHHCSSSCEEEEE-EECCBCHHHHHHHHHHHHH----------------------
T ss_pred cEEEEcCE-ECHHHHHHHHHHHHHHHhcCCCCCEEEEE-ECCCCCHHHHHHHHHHHHh----------------------
Confidence 44444422 233456667777766643 4589999988 6789999988888776521
Q ss_pred CccCCCCCEEEEEcCCCccHHHHHHHHHh
Q 015469 290 DALAASEPLAVLVNKGTASASEILAGALK 318 (406)
Q Consensus 290 ~~~~~~~~v~vLvd~~t~SaaE~~a~~lk 318 (406)
.+.||++.+.+.++|++-+++.+-.
T Consensus 139 ----~k~pV~t~v~G~AASaG~~Ia~Agd 163 (277)
T 1tg6_A 139 ----ILNPICTWCVGQAASMGSLLLAAGT 163 (277)
T ss_dssp ----SCSCEEEEEEEEEETHHHHHHHTSC
T ss_pred ----cCCCEEEEEccEeHHHHHHHHHCCC
Confidence 2257888899999999988887754
No 212
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=56.39 E-value=11 Score=33.19 Aligned_cols=70 Identities=20% Similarity=0.274 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhc-CCCCeEEEEeCCCCCCChHHHHHHHHhhccCCcEEEEEcCCCceeeeecCCCCccCCCCCEEEEEc
Q 015469 225 SGAVREAIDTLRS-NSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGTDALAASEPLAVLVN 303 (406)
Q Consensus 225 ~~~~~~~~~~~~~-~~~~~lIiDlR~N~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vLvd 303 (406)
.+++.++++++.+ ..++++||..-+ +||++..+..+...+.. +.. ...+||+..++
T Consensus 31 ~~~l~~~l~~a~~d~~v~~ivL~~~s-~Gg~~~~~~~i~~~l~~----------------~~~------~~~kPVia~v~ 87 (240)
T 3rst_A 31 HRTFLKNLERAKDDKTVKGIVLKVNS-PGGGVYESAEIHKKLEE----------------IKK------ETKKPIYVSMG 87 (240)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEEE-CCBCHHHHHHHHHHHHH----------------HHH------HHCCCEEEEEE
T ss_pred HHHHHHHHHHHHhCCCcEEEEEEecC-CCCCHHHHHHHHHHHHH----------------HHH------hCCCeEEEEEC
Confidence 4678888888764 468999998864 78887765544433210 000 03579999999
Q ss_pred CCCccHHHHHHHHH
Q 015469 304 KGTASASEILAGAL 317 (406)
Q Consensus 304 ~~t~SaaE~~a~~l 317 (406)
+.++|++=.++.+.
T Consensus 88 g~a~~gG~~lA~a~ 101 (240)
T 3rst_A 88 SMAASGGYYISTAA 101 (240)
T ss_dssp EEEETHHHHHHTTS
T ss_pred CeehHhHHHHHHhC
Confidence 99999987776654
No 213
>3bl4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 2.20A {Arthrobacter SP}
Probab=48.21 E-value=30 Score=27.10 Aligned_cols=42 Identities=7% Similarity=0.132 Sum_probs=33.3
Q ss_pred CCceEEEEcCc---cccchHHHHHHHHHHHhcCCCCeEEEEeCCC
Q 015469 209 SPRIGYIKLTS---FNQNASGAVREAIDTLRSNSVNAFVLDLRDN 250 (406)
Q Consensus 209 ~~~igyl~i~~---f~~~~~~~~~~~~~~~~~~~~~~lIiDlR~N 250 (406)
+++|.|+++.. +.......+...+.++...+.-.+++|+|..
T Consensus 18 ~dGIl~~~~~~~~~i~~e~A~~~~~~~~~l~~~~~~~vL~D~r~~ 62 (124)
T 3bl4_A 18 GDGILRLTWPRGAAITAADAERAMLRVNQLCGDDRHPMLVDMATT 62 (124)
T ss_dssp TTSCEEEECSSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred CCCEEEEEEcCCCccCHHHHHHHHHHHHHHhCCCceEEEEEcccc
Confidence 46899999987 5556666777777777766778999999998
No 214
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=43.41 E-value=45 Score=25.75 Aligned_cols=65 Identities=15% Similarity=0.174 Sum_probs=39.6
Q ss_pred CceEEEEcCc-cccchHHHHHHHHHHHhcC---CCCeEEEEeCCCCCCCh---HHHHHHHHhhccCCcEEEE
Q 015469 210 PRIGYIKLTS-FNQNASGAVREAIDTLRSN---SVNAFVLDLRDNSGGLF---PEGIEIAKIWLDKGVIVYI 274 (406)
Q Consensus 210 ~~igyl~i~~-f~~~~~~~~~~~~~~~~~~---~~~~lIiDlR~N~GG~~---~~~~~l~~~~~~~~~~~~~ 274 (406)
+++..+++.. +.-.+.+.|.+.+.++... +.+.||||+++=.-=+. .....+...+-..+..+..
T Consensus 14 ~~v~v~~l~G~L~f~~a~~~~~~l~~~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l 85 (130)
T 2kln_A 14 PGLVVYRYDAPLCFANAEDFRRRALTVVDQDPGQVEWFVLNAESNVEVDLTALDALDQLRTELLRRGIVFAM 85 (130)
T ss_dssp SSEEEEECCSCCBTTTHHHHHHHHHHHTTSSSSCCEEEEEECSCCSSSBCSTTTHHHHHHHHHHTTTEEEEE
T ss_pred CCEEEEEECCceEechHHHHHHHHHHHHhcCCCCceEEEEECCCCChhhHHHHHHHHHHHHHHHHCCCEEEE
Confidence 4677888865 3334677888888776543 57899999997543221 1223444555555554443
No 215
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Probab=41.05 E-value=11 Score=38.24 Aligned_cols=85 Identities=20% Similarity=0.198 Sum_probs=57.7
Q ss_pred CCceEEEEcCcc--------ccchHHHHHHHHHHHhcC-CCCeEEEEeCCCCCCChHHHHHHHHhhccCCcEEEEEcCCC
Q 015469 209 SPRIGYIKLTSF--------NQNASGAVREAIDTLRSN-SVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRG 279 (406)
Q Consensus 209 ~~~igyl~i~~f--------~~~~~~~~~~~~~~~~~~-~~~~lIiDlR~N~GG~~~~~~~l~~~~~~~~~~~~~~~~~~ 279 (406)
.++|+.|.++.- +....+++.++|+++.+. +++++||.+-+ +||++..+..+...+..
T Consensus 300 ~~~VavI~l~g~i~~n~~~~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~s-pGG~~~~~~~i~~~i~~------------ 366 (593)
T 3bf0_A 300 GDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNS-PGGSVTASEVIRAELAA------------ 366 (593)
T ss_dssp SCEEEEEEEEEEEESSSSCTTSEEHHHHHHHHHHHHHCTTEEEEEEEEEE-EEECHHHHHHHHHHHHH------------
T ss_pred CCCEEEEEEeeeecCCccccchhHHHHHHHHHHHHHhCCCCCEEEEEecC-CCCCHHHHHHHHHHHHH------------
Confidence 457888888643 122367888999888754 78999987754 68887765433332210
Q ss_pred ceeeeecCCCCccCCCCCEEEEEcCCCccHHHHHHHHH
Q 015469 280 VRDIYDTDGTDALAASEPLAVLVNKGTASASEILAGAL 317 (406)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~v~vLvd~~t~SaaE~~a~~l 317 (406)
+ ....+||++.+++.++|++=.++.+.
T Consensus 367 ----l-------~~~~kPVia~v~g~AasgG~~iA~aa 393 (593)
T 3bf0_A 367 ----A-------RAAGKPVVVSMGGMAASGGYWISTPA 393 (593)
T ss_dssp ----H-------HHTTCCEEEEEEEEEETHHHHTTTTC
T ss_pred ----H-------HhCCCCEEEEECCChHHHHHHHHHhC
Confidence 0 01357899999999999997777665
No 216
>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}
Probab=33.08 E-value=65 Score=28.78 Aligned_cols=103 Identities=13% Similarity=0.110 Sum_probs=52.9
Q ss_pred CceEEEEcCc------cccchHHHHHHHHHHHhc-CCCCeEEEEeCCCCCCChHHHHHHHHhhccCCcEEEEEcCCCcee
Q 015469 210 PRIGYIKLTS------FNQNASGAVREAIDTLRS-NSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRD 282 (406)
Q Consensus 210 ~~igyl~i~~------f~~~~~~~~~~~~~~~~~-~~~~~lIiDlR~N~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 282 (406)
++|++|.++. ++.....++.+++..+.+ ..++.+|| ++++ +.+..+.++-.+ ......-..........
T Consensus 28 ~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVl--tg~g-~~F~aG~Dl~~~-~~~~~~~~~~~~~~~~~ 103 (278)
T 4f47_A 28 GHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCIL--TGAG-GYFCAGMDLKAA-TKKPPGDSFKDGSYDPS 103 (278)
T ss_dssp TTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEE--EEST-TCCC-----------------------CTT
T ss_pred CCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEE--ECCC-CcccCCcChHhh-hccchhhhHHHHHHHHH
Confidence 4688887754 444567788888988865 46899998 4443 344444443322 11100000000000000
Q ss_pred eeecCCCCccCCCCCEEEEEcCCCccHHHHHHHHH
Q 015469 283 IYDTDGTDALAASEPLAVLVNKGTASASEILAGAL 317 (406)
Q Consensus 283 ~~~~~~~~~~~~~~~v~vLvd~~t~SaaE~~a~~l 317 (406)
.+..- ..-...++|++..+++.+...+-.++.+.
T Consensus 104 ~~~~l-~~~~~~~kPvIAav~G~a~GgG~~lalac 137 (278)
T 4f47_A 104 RIDAL-LKGRRLKKPLIAAVEGPAIAGGTEILQGT 137 (278)
T ss_dssp CBTTT-TBSCCCSSCEEEEECSEEETHHHHHHTTC
T ss_pred HHHHH-HHhcCCCCCEEEEECCEEehHHHHHHHhC
Confidence 11110 00115789999999999999988777654
No 217
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=32.65 E-value=1.5e+02 Score=22.42 Aligned_cols=47 Identities=11% Similarity=-0.012 Sum_probs=33.2
Q ss_pred CceEEEEcCc-cccchHHHHHHHHHH-HhcCCCCeEEEEeCCCCCCChH
Q 015469 210 PRIGYIKLTS-FNQNASGAVREAIDT-LRSNSVNAFVLDLRDNSGGLFP 256 (406)
Q Consensus 210 ~~igyl~i~~-f~~~~~~~~~~~~~~-~~~~~~~~lIiDlR~N~GG~~~ 256 (406)
+++..+++.. +...+...+++.+.+ +...+.+.+|||+++=.-=+..
T Consensus 20 ~~~~vv~l~G~Ld~~~a~~l~~~l~~~~~~~~~~~vvlDls~V~~iDSs 68 (125)
T 2ka5_A 20 DDVVILMPNKELNIENAHLFKKWVFDEFLNKGYNKIFLVLSDVESIDSF 68 (125)
T ss_dssp SSCEEECCCSCCSGGGTHHHHHHHHHHTTTTTCCEEEEECTTCSCCCHH
T ss_pred CCEEEEEEecEEecccHHHHHHHHHHHHhhCCCCEEEEECCCCCEEcHH
Confidence 3667777764 333456788888887 5445788999999987755544
No 218
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=31.25 E-value=75 Score=27.47 Aligned_cols=52 Identities=25% Similarity=0.375 Sum_probs=35.7
Q ss_pred CCcEEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCCH---HHHHHHhCCCCCCcEEEEE
Q 015469 117 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGI---YDAAERLQGPEGSPVELTV 174 (406)
Q Consensus 117 ~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~---~~~~~~l~~~~g~~v~l~v 174 (406)
+.++.|..- .+.|++.|..++++||.++..... .++...+.++.+.++-+..
T Consensus 44 ~~~~~v~~~------~~d~~~~~~~~~~~ng~~~~~~~~~d~~~v~~~iigk~N~PLyir~ 98 (219)
T 2j3t_D 44 DERVLVAFG------QRDGIRVGHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRF 98 (219)
T ss_dssp SSSEEEEEC------CCTTCCTTCEEEEETTEECBTTBCTTSSBHHHHTTCGGGCSEEEEE
T ss_pred cceeEEeec------ccCCccccceeeecCCccCCCcccccCceeeeeeecCCCCceEEEe
Confidence 456666543 567899999999999999986311 2466667666666655543
No 219
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=30.62 E-value=69 Score=24.25 Aligned_cols=46 Identities=7% Similarity=0.064 Sum_probs=32.1
Q ss_pred CceEEEEcCcc----ccchHHHHHHHHHH-HhcCCCCeEEEEeCCCCCCCh
Q 015469 210 PRIGYIKLTSF----NQNASGAVREAIDT-LRSNSVNAFVLDLRDNSGGLF 255 (406)
Q Consensus 210 ~~igyl~i~~f----~~~~~~~~~~~~~~-~~~~~~~~lIiDlR~N~GG~~ 255 (406)
+++..+++..- .......+++.+.+ +.+.+.+.+|||+++=.-=+.
T Consensus 13 ~~~~vv~l~G~l~~ld~~~~~~l~~~l~~~l~~~~~~~vvlDls~v~~iDS 63 (121)
T 3t6o_A 13 AQVTVISFPAVFQRLRETEVEQIASTFLAAMQGAQPRKVLIDLEGVEFFGS 63 (121)
T ss_dssp TTEEEEECCGGGSEECHHHHHHHHHHHHHTTCCSSSCEEEEECTTCCEECH
T ss_pred CCEEEEEEccccccCchhhHHHHHHHHHHHHhhcCCCeEEEECCCCCEEcH
Confidence 47888888762 33456778887754 334578999999999774443
No 220
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=29.83 E-value=50 Score=24.53 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=28.7
Q ss_pred ceEEEEcCc-cccchHHHHHHHHHHHhcCC-CCeEEEEeCCCCCCCh
Q 015469 211 RIGYIKLTS-FNQNASGAVREAIDTLRSNS-VNAFVLDLRDNSGGLF 255 (406)
Q Consensus 211 ~igyl~i~~-f~~~~~~~~~~~~~~~~~~~-~~~lIiDlR~N~GG~~ 255 (406)
++..+++.. +.......+.+.+.++...+ .+.+|||+++=.-=+.
T Consensus 12 ~~~vv~l~G~l~~~~~~~l~~~l~~~~~~~~~~~vvlDls~v~~iDs 58 (116)
T 1th8_B 12 DVLIVRLSGELDHHTAEELREQVTDVLENRAIRHIVLNLGQLTFMDS 58 (116)
T ss_dssp TEEEEEEEEEESHHHHHHHHHHHHHHHHSSCCCEEEEEEEEEEEECH
T ss_pred CEEEEEEeeeeccccHHHHHHHHHHHHhcCCCcEEEEECCCCcEEcc
Confidence 555666644 23334567777777655444 7899999987654443
No 221
>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}
Probab=27.22 E-value=1e+02 Score=27.80 Aligned_cols=104 Identities=14% Similarity=0.115 Sum_probs=52.1
Q ss_pred ceEEEEcCc------cccchHHHHHHHHHHHhc-CCCCeEEEEeCC---CCCCChHHHHHHHHhhccCCcEEEEEcCCCc
Q 015469 211 RIGYIKLTS------FNQNASGAVREAIDTLRS-NSVNAFVLDLRD---NSGGLFPEGIEIAKIWLDKGVIVYICDSRGV 280 (406)
Q Consensus 211 ~igyl~i~~------f~~~~~~~~~~~~~~~~~-~~~~~lIiDlR~---N~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~ 280 (406)
+|++|.++. |+.....++.+++..+.+ ..++.+||-=.+ +.|+++....... .+ +.... ........
T Consensus 39 ~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~-~~-~~~~~-~~~~~~~~ 115 (298)
T 3qre_A 39 GVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAGAYLGSADAAA-GY-DKTMA-KAKDANLA 115 (298)
T ss_dssp SEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC---------------------------
T ss_pred CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcc-cc-ccccc-cchhHHHH
Confidence 688887754 445567788889988865 468999984221 2244443211000 00 00000 00000000
Q ss_pred eeeeecCCCCccCCCCCEEEEEcCCCccHHHHHHHHH
Q 015469 281 RDIYDTDGTDALAASEPLAVLVNKGTASASEILAGAL 317 (406)
Q Consensus 281 ~~~~~~~~~~~~~~~~~v~vLvd~~t~SaaE~~a~~l 317 (406)
......--..-...++|++..+++.+...+-.++.+.
T Consensus 116 ~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~Lalac 152 (298)
T 3qre_A 116 DLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALMC 152 (298)
T ss_dssp -----CCTTGGGGSSSCEEEEECSCEETHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCceeecchHHHhhC
Confidence 0000000011234789999999999999998888775
No 222
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=26.56 E-value=2.1e+02 Score=21.67 Aligned_cols=46 Identities=11% Similarity=0.109 Sum_probs=33.5
Q ss_pred CceEEEEcCc-cccchHHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH
Q 015469 210 PRIGYIKLTS-FNQNASGAVREAIDTLRSNSVNAFVLDLRDNSGGLFP 256 (406)
Q Consensus 210 ~~igyl~i~~-f~~~~~~~~~~~~~~~~~~~~~~lIiDlR~N~GG~~~ 256 (406)
+++.++++.. +.-.+.+.|.+.+..+ ..+.+.+|||+++=..=+..
T Consensus 19 ~~v~v~~~~G~L~f~~a~~~~~~l~~~-~~~~~~vvlDls~v~~iDss 65 (130)
T 4dgh_A 19 RELAVYALEGPFFFAAAETFERVMGSI-QETPQILILRLKWVPFMDIT 65 (130)
T ss_dssp TTEEEEECCSSCCHHHHHHHHHHHHHS-SSCCSEEEEECTTCCCCCHH
T ss_pred CCEEEEEEeeeEeehhHHHHHHHHHHh-ccCCCEEEEECCCCCcccHH
Confidence 4788888876 3334567788888765 34789999999998765544
No 223
>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}
Probab=26.16 E-value=2.5e+02 Score=24.44 Aligned_cols=97 Identities=21% Similarity=0.109 Sum_probs=56.6
Q ss_pred CceEEEEcCc------cccchHHHHHHHHHHHhc-CCCCeEEEEeCC---CCCCChHHHHHHHHhhccCCcEEEEEcCCC
Q 015469 210 PRIGYIKLTS------FNQNASGAVREAIDTLRS-NSVNAFVLDLRD---NSGGLFPEGIEIAKIWLDKGVIVYICDSRG 279 (406)
Q Consensus 210 ~~igyl~i~~------f~~~~~~~~~~~~~~~~~-~~~~~lIiDlR~---N~GG~~~~~~~l~~~~~~~~~~~~~~~~~~ 279 (406)
++|++|.++. ++.....++.+++.++.+ ..++.+||-=.+ +.|+++... .. ..+.+..-+ ...
T Consensus 20 ~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~---~~-~~~~~~~~~---~~~ 92 (258)
T 3lao_A 20 GHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGLDLMEL---AP-KLAASGFRY---PDG 92 (258)
T ss_dssp TTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHH---GG-GCBTTBCCC---CTT
T ss_pred CCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCeecCcCHHHH---hh-ccchhhHHH---HHH
Confidence 3677777754 444567788888888865 468999984322 346665431 11 111111000 000
Q ss_pred ceeeeecCCCCc-cCCCCCEEEEEcCCCccHHHHHHHHH
Q 015469 280 VRDIYDTDGTDA-LAASEPLAVLVNKGTASASEILAGAL 317 (406)
Q Consensus 280 ~~~~~~~~~~~~-~~~~~~v~vLvd~~t~SaaE~~a~~l 317 (406)
....+. .- ...++|++..+++.+...+-.++.+.
T Consensus 93 ~~~~~~----~l~~~~~kPvIAav~G~a~GgG~~lalac 127 (258)
T 3lao_A 93 GVDPWG----VVQPRRSKPLVVAVQGTCWTAGIELMLNA 127 (258)
T ss_dssp CCCTTS----CSSSCCCSCEEEEECSEEETHHHHHHHTS
T ss_pred HHHHHH----HHHHhCCCCEEEEECCEeEhHHHHHHHhC
Confidence 011111 11 35789999999999999998887765
No 224
>2lti_A Astexin1; sidechain-TO-backbone LINK, lasso peptide, antimic protein; NMR {Asticcacaulis excentricus}
Probab=24.93 E-value=22 Score=18.70 Aligned_cols=11 Identities=36% Similarity=0.326 Sum_probs=8.3
Q ss_pred CCcccCeecCC
Q 015469 366 VGVIPDHPLPK 376 (406)
Q Consensus 366 ~Gv~PDi~v~~ 376 (406)
.||+|||--..
T Consensus 4 qgvepdigqty 14 (26)
T 2lti_A 4 QGVEPDIGQTY 14 (26)
T ss_dssp SSSSCCBBTTB
T ss_pred cccCCCcchhh
Confidence 59999986543
No 225
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=23.53 E-value=1.8e+02 Score=21.85 Aligned_cols=47 Identities=4% Similarity=-0.053 Sum_probs=32.0
Q ss_pred CCceEEEEcCc-cccchHHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH
Q 015469 209 SPRIGYIKLTS-FNQNASGAVREAIDTLRSNSVNAFVLDLRDNSGGLFP 256 (406)
Q Consensus 209 ~~~igyl~i~~-f~~~~~~~~~~~~~~~~~~~~~~lIiDlR~N~GG~~~ 256 (406)
.+++..+++.. +.-.+.+.+.+.+.++. .+.+.+|||+++=..=+..
T Consensus 15 ~~~v~v~~l~G~L~f~~a~~l~~~l~~~~-~~~~~vilDl~~v~~iDss 62 (118)
T 3ny7_A 15 PDDVLVLRVIGPLFFAAAEGLFTDLESRL-EGKRIVILKWDAVPVLDAG 62 (118)
T ss_dssp CTTEEEEEEESCBCHHHHHHHHHHHHTTC-TTCSEEEEEEEECCCBCHH
T ss_pred CCCEEEEEEeceeEehhHHHHHHHHHHhc-CCCcEEEEEcCCCCeecHH
Confidence 35777888766 33345667777776543 4689999999987755543
No 226
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=23.24 E-value=65 Score=23.51 Aligned_cols=46 Identities=20% Similarity=0.196 Sum_probs=27.4
Q ss_pred ceEEEEcCc-cccchHHHHHHHHHHHhc-CCCCeEEEEeCCCCCCChH
Q 015469 211 RIGYIKLTS-FNQNASGAVREAIDTLRS-NSVNAFVLDLRDNSGGLFP 256 (406)
Q Consensus 211 ~igyl~i~~-f~~~~~~~~~~~~~~~~~-~~~~~lIiDlR~N~GG~~~ 256 (406)
++..+++.. +.......+.+.+.++.. ...+.+|||+++=.-=+..
T Consensus 13 ~~~vv~l~G~l~~~~~~~l~~~l~~~~~~~~~~~vvlDls~v~~iDss 60 (110)
T 1sbo_A 13 DKAIVRVQGDIDAYNSSELKEQLRNFISTTSKKKIVLDLSSVSYMDSA 60 (110)
T ss_dssp SEEEEEEESCBSTTTTTHHHHHHHTHHHHCSCSEEEEECTTCCCBCHH
T ss_pred CEEEEEEeeEEccccHHHHHHHHHHHHhcCCCcEEEEECCCCcEEccH
Confidence 555666643 333344566666655433 2347899999987655544
No 227
>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}
Probab=22.87 E-value=3.3e+02 Score=23.73 Aligned_cols=97 Identities=20% Similarity=0.101 Sum_probs=57.4
Q ss_pred CceEEEEcCc------cccchHHHHHHHHHHHhc-CCCCeEEEEeC---CCCCCChHHHHHHHHhhccCCcEEEEEcCCC
Q 015469 210 PRIGYIKLTS------FNQNASGAVREAIDTLRS-NSVNAFVLDLR---DNSGGLFPEGIEIAKIWLDKGVIVYICDSRG 279 (406)
Q Consensus 210 ~~igyl~i~~------f~~~~~~~~~~~~~~~~~-~~~~~lIiDlR---~N~GG~~~~~~~l~~~~~~~~~~~~~~~~~~ 279 (406)
++|++|.++. ++.....++.+++..+.+ ..++.+||-=. .+.|+++... .... ..+.. .....
T Consensus 17 ~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~---~~~~-~~~~~---~~~~~ 89 (265)
T 3swx_A 17 GYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASV---AAEI-QGGAS---LTPEG 89 (265)
T ss_dssp TTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHH---HHHH-C--CC---CCCTT
T ss_pred CCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcChHHH---hhcc-cchhH---HHHHH
Confidence 3677777754 444567788888988865 46899998432 3447776542 2211 11100 00001
Q ss_pred ceeeeecCCCCc-cCCCCCEEEEEcCCCccHHHHHHHHH
Q 015469 280 VRDIYDTDGTDA-LAASEPLAVLVNKGTASASEILAGAL 317 (406)
Q Consensus 280 ~~~~~~~~~~~~-~~~~~~v~vLvd~~t~SaaE~~a~~l 317 (406)
....+. .- ...++|++..+++.+...+-.++.+.
T Consensus 90 ~~~~~~----~l~~~~~kPvIAav~G~a~GgG~~lalac 124 (265)
T 3swx_A 90 GINPWQ----VDGRQLSKPLLVAVHGKVLTLGIELALAA 124 (265)
T ss_dssp CCCTTC----CSSCCCSSCEEEEECSEEETHHHHHHHHS
T ss_pred HHHHHH----HHHHhCCCCEEEEEcCeeehHHHHHHHHC
Confidence 011111 11 35789999999999999998887775
No 228
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Probab=22.51 E-value=49 Score=27.46 Aligned_cols=50 Identities=22% Similarity=0.359 Sum_probs=36.2
Q ss_pred EcCccccchHHHHHHHHHHHhcCCCCeEEEEeCCCCCCChHHHHHHHHhhccCC
Q 015469 216 KLTSFNQNASGAVREAIDTLRSNSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKG 269 (406)
Q Consensus 216 ~i~~f~~~~~~~~~~~~~~~~~~~~~~lIiDlR~N~GG~~~~~~~l~~~~~~~~ 269 (406)
.+..|..+...++-..+.+....+++++|| |||+....+..+..-+..-.
T Consensus 55 ~l~~~QSN~EGeLId~Ih~a~~~~~dgIII----NpgAyTHtSvAlrDAl~~v~ 104 (176)
T 2c4w_A 55 ELEFFQTNFEGEIIDKIQESVGSEYEGIII----NPGAFSHTSIAIADAIMLAG 104 (176)
T ss_dssp EEEEEECSCHHHHHHHHHHHHSSSCCEEEE----ECGGGGGTCHHHHHHHHTSS
T ss_pred EEEEEeeCcHHHHHHHHHHhccCCeeEEEE----CcchhccchHHHHHHHHhCC
Confidence 555666666667777777765555999999 99999877777777665433
Done!