Query 015471
Match_columns 406
No_of_seqs 288 out of 1239
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 06:37:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015471.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015471hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03193 beta-1,3-galactosyltr 100.0 2E-109 4E-114 833.4 34.9 404 1-406 1-408 (408)
2 KOG2288 Galactosyltransferases 100.0 1.1E-71 2.4E-76 524.3 16.8 265 134-406 8-273 (274)
3 PLN03133 beta-1,3-galactosyltr 100.0 1.6E-53 3.5E-58 450.3 23.1 235 134-405 382-624 (636)
4 KOG2287 Galactosyltransferases 100.0 2.3E-52 5E-57 420.4 22.2 239 136-404 94-336 (349)
5 PF01762 Galactosyl_T: Galacto 100.0 8.8E-48 1.9E-52 356.5 17.2 191 151-349 1-195 (195)
6 PTZ00210 UDP-GlcNAc-dependent 100.0 4.3E-32 9.4E-37 270.2 16.5 194 131-343 74-308 (382)
7 PF13334 DUF4094: Domain of un 100.0 8.4E-29 1.8E-33 204.9 7.9 93 19-111 1-94 (95)
8 PF02434 Fringe: Fringe-like; 99.8 5.8E-19 1.3E-23 170.8 11.8 190 137-353 6-207 (252)
9 KOG2246 Galactosyltransferases 99.7 1.4E-16 3.1E-21 161.3 14.7 170 133-349 87-269 (364)
10 PLN03153 hypothetical protein; 99.2 4.6E-10 1E-14 116.9 14.2 180 137-354 122-318 (537)
11 KOG3708 Uncharacterized conser 97.4 0.001 2.2E-08 69.6 9.9 155 138-345 27-191 (681)
12 PF01755 Glyco_transf_25: Glyc 95.9 0.15 3.3E-06 46.9 12.6 93 141-250 4-101 (200)
13 PF13641 Glyco_tranf_2_3: Glyc 94.5 0.82 1.8E-05 42.0 12.9 189 138-348 2-204 (228)
14 cd04192 GT_2_like_e Subfamily 94.4 1.3 2.9E-05 40.3 13.9 166 176-348 29-203 (229)
15 TIGR03472 HpnI hopanoid biosyn 94.2 1.6 3.5E-05 44.5 15.3 189 137-343 41-240 (373)
16 cd02510 pp-GalNAc-T pp-GalNAc- 93.2 5.6 0.00012 38.8 16.5 126 226-351 75-222 (299)
17 TIGR03469 HonB hopene-associat 93.1 3.1 6.7E-05 42.6 15.2 159 176-342 71-248 (384)
18 cd02525 Succinoglycan_BP_ExoA 92.8 7.2 0.00016 35.9 16.0 167 174-352 30-206 (249)
19 PF00535 Glycos_transf_2: Glyc 92.3 3.6 7.9E-05 34.7 12.4 159 139-317 2-168 (169)
20 PRK11204 N-glycosyltransferase 91.7 13 0.00027 38.2 17.7 147 192-349 97-255 (420)
21 PF13506 Glyco_transf_21: Glyc 91.7 0.63 1.4E-05 42.6 7.2 117 220-345 17-143 (175)
22 cd02520 Glucosylceramide_synth 91.4 11 0.00023 34.2 16.3 137 176-348 31-171 (196)
23 cd06421 CESA_CelA_like CESA_Ce 90.9 9.5 0.00021 34.8 14.4 120 226-351 76-208 (234)
24 cd04186 GT_2_like_c Subfamily 90.6 9.7 0.00021 32.3 13.4 84 233-348 73-159 (166)
25 cd06439 CESA_like_1 CESA_like_ 89.5 12 0.00025 35.0 14.0 122 225-352 100-227 (251)
26 cd06532 Glyco_transf_25 Glycos 89.2 3.9 8.4E-05 35.3 9.6 116 142-323 3-119 (128)
27 cd06423 CESA_like CESA_like is 87.4 15 0.00033 30.7 12.1 95 224-318 68-170 (180)
28 cd04187 DPM1_like_bac Bacteria 87.0 8.2 0.00018 34.1 10.7 135 175-320 29-165 (181)
29 PF13632 Glyco_trans_2_3: Glyc 84.9 3 6.5E-05 37.5 6.8 117 237-357 1-127 (193)
30 PRK14583 hmsR N-glycosyltransf 84.6 55 0.0012 34.1 17.6 162 175-349 104-276 (444)
31 cd04196 GT_2_like_d Subfamily 82.7 35 0.00075 30.4 15.2 161 175-348 27-197 (214)
32 cd02526 GT2_RfbF_like RfbF is 81.9 36 0.00079 31.1 13.0 148 203-353 46-203 (237)
33 cd04195 GT2_AmsE_like GT2_AmsE 81.6 38 0.00082 30.1 12.6 115 226-349 72-196 (201)
34 cd04179 DPM_DPG-synthase_like 80.0 17 0.00037 31.8 9.7 131 176-318 29-167 (185)
35 cd06433 GT_2_WfgS_like WfgS an 79.2 12 0.00027 32.7 8.5 111 225-342 66-180 (202)
36 cd06434 GT2_HAS Hyaluronan syn 79.0 11 0.00024 34.6 8.4 154 176-342 29-199 (235)
37 cd06435 CESA_NdvC_like NdvC_li 78.3 55 0.0012 30.0 13.1 118 225-348 73-203 (236)
38 cd04185 GT_2_like_b Subfamily 77.8 52 0.0011 29.4 14.5 101 223-353 69-172 (202)
39 cd06420 GT2_Chondriotin_Pol_N 77.4 14 0.0003 32.4 8.2 96 226-342 71-166 (182)
40 COG1215 Glycosyltransferases, 75.8 66 0.0014 32.7 13.8 194 137-349 54-260 (439)
41 TIGR03111 glyc2_xrt_Gpos1 puta 74.7 67 0.0014 33.5 13.7 125 225-352 122-265 (439)
42 cd06437 CESA_CaSu_A2 Cellulose 72.8 78 0.0017 29.1 15.3 120 225-350 78-209 (232)
43 PF04646 DUF604: Protein of un 72.8 5.1 0.00011 39.2 4.4 52 302-353 11-66 (255)
44 PRK10714 undecaprenyl phosphat 69.2 1.2E+02 0.0025 30.4 13.5 134 175-319 38-174 (325)
45 COG1216 Predicted glycosyltran 69.1 30 0.00065 34.0 9.2 137 203-342 55-206 (305)
46 cd06442 DPM1_like DPM1_like re 63.5 1.1E+02 0.0025 27.4 12.6 85 233-318 77-167 (224)
47 cd02522 GT_2_like_a GT_2_like_ 59.5 65 0.0014 29.0 8.9 104 227-342 65-173 (221)
48 cd02514 GT13_GLCNAC-TI GT13_GL 58.6 42 0.00092 34.2 8.0 83 223-317 86-174 (334)
49 cd04184 GT2_RfbC_Mx_like Myxoc 57.2 1.4E+02 0.003 26.4 17.3 109 225-342 74-187 (202)
50 PF10111 Glyco_tranf_2_2: Glyc 56.7 1.9E+02 0.0042 27.9 13.3 164 173-344 32-210 (281)
51 cd04190 Chitin_synth_C C-termi 56.6 20 0.00043 33.9 5.1 113 233-345 72-211 (244)
52 COG4092 Predicted glycosyltran 56.6 44 0.00095 33.3 7.4 161 172-338 35-214 (346)
53 TIGR01556 rhamnosyltran L-rham 56.5 1.9E+02 0.004 27.6 12.7 122 225-351 65-198 (281)
54 PHA01631 hypothetical protein 55.1 30 0.00066 31.8 5.6 64 233-320 70-133 (176)
55 TIGR03030 CelA cellulose synth 54.6 3.1E+02 0.0067 30.8 14.7 132 217-353 212-357 (713)
56 cd04191 Glucan_BSP_ModH Glucan 49.8 2.5E+02 0.0054 27.1 14.7 132 209-348 69-225 (254)
57 cd04188 DPG_synthase DPG_synth 49.0 2E+02 0.0044 25.8 10.9 88 175-270 30-119 (211)
58 KOG2547 Ceramide glucosyltrans 48.0 20 0.00043 37.2 3.6 44 234-279 170-213 (431)
59 cd00761 Glyco_tranf_GTA_type G 47.0 1.5E+02 0.0032 23.8 11.7 80 226-340 69-149 (156)
60 PF04508 Pox_A_type_inc: Viral 42.9 33 0.00071 21.3 2.7 19 92-110 3-21 (23)
61 PF03071 GNT-I: GNT-I family; 41.9 3E+02 0.0064 29.3 11.3 83 226-320 183-272 (434)
62 PLN02726 dolichyl-phosphate be 37.6 3.4E+02 0.0074 25.2 17.9 158 175-348 40-212 (243)
63 cd06427 CESA_like_2 CESA_like_ 33.7 3.9E+02 0.0084 24.7 13.6 121 225-348 75-206 (241)
64 PRK05454 glucosyltransferase M 32.3 4.7E+02 0.01 29.5 11.6 202 134-348 121-350 (691)
65 cd06438 EpsO_like EpsO protein 32.0 3.5E+02 0.0076 23.7 10.7 89 224-316 70-169 (183)
66 PF03452 Anp1: Anp1; InterPro 31.9 2.2E+02 0.0047 28.3 8.0 87 173-260 54-168 (269)
67 PF04799 Fzo_mitofusin: fzo-li 31.4 57 0.0012 30.2 3.6 43 2-44 24-69 (171)
68 PLN03182 xyloglucan 6-xylosylt 28.8 3.6E+02 0.0078 28.5 9.2 93 154-247 106-210 (429)
69 PF13704 Glyco_tranf_2_4: Glyc 26.2 3.3E+02 0.007 21.4 7.4 48 203-251 40-88 (97)
70 PF04666 Glyco_transf_54: N-Ac 25.2 3.8E+02 0.0082 26.9 8.5 24 233-256 168-191 (297)
71 PRK10018 putative glycosyl tra 23.7 6.9E+02 0.015 24.4 12.0 34 226-259 77-110 (279)
72 PLN03181 glycosyltransferase; 23.2 4.5E+02 0.0097 28.0 8.7 92 153-247 108-211 (453)
73 PRK14716 bacteriophage N4 adso 22.0 1E+03 0.022 25.7 16.1 111 234-348 158-283 (504)
74 PF06072 Herpes_US9: Alphaherp 21.8 82 0.0018 24.1 2.3 17 23-39 42-58 (60)
75 cd06913 beta3GnTL1_like Beta 1 21.7 5.9E+02 0.013 22.9 12.2 44 226-269 76-119 (219)
No 1
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=1.7e-109 Score=833.41 Aligned_cols=404 Identities=84% Similarity=1.383 Sum_probs=376.5
Q ss_pred CCccccCcccccCCCCCchhHHHHHHHHHHHHhHhhhccccCCCccccccccccccccccccccccCCcccc---c-ccC
Q 015471 1 MTWKSRGGIESASHKSFMSKKWTLLLCIGCFCAGMLFSDRMWTVPEVRDVSRGAGFEDEKLKLVSEGCDSVM---N-VKR 76 (406)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~ 76 (406)
||.|+|| +...+++.||++|+++||++|||+|++|++|||..||..+..+.++++++++++.+++|++|+ | +++
T Consensus 1 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 78 (408)
T PLN03193 1 MSTKSRG--EEYSSRSVVSRKWTLLLCLGCFCAGMLFTDRMWTIPESKGISRTTVTEAERLKLVSEGCDPKTLYQKEVKR 78 (408)
T ss_pred CCccccc--ccccccccccHHHHHHHHHHHHHHHHhhccccccCCccccccccccchhhhhhhhcccccccccccccccc
Confidence 8999999 578899999999999999999999999999999999999988888888999999999999876 3 356
Q ss_pred CcchhhhchHhhHHHHHHhhhhHHHHHHHHHHHhhhcccccCCCCCCcccccccccCCCCeeEEEEEeCCCCCHHHHHHH
Q 015471 77 EPAEILGEVSKTHHAIQALDKTISNLEMELAAARATQESIINGSPLSDNLKINELKGKRKYLMVVGINSAFSSRKRRDSV 156 (406)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~i~~le~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llI~V~S~p~~~~rR~aI 156 (406)
++++||++|++||+|||+|+|+|+.||||||+|++.+..+.++.|.++.....+...++++++||+|+|+|+|++||++|
T Consensus 79 ~~~~~~~~~~~t~~~~~~~~~~~~~le~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvIgI~Sap~~~~RR~AI 158 (408)
T PLN03193 79 DSKDIIGEVSKTHNAIQTLDKTISNLEMELAAARAAQESILNGSPISEDLKKTQSSGKRRYLMVVGINTAFSSRKRRDSV 158 (408)
T ss_pred chhHHHHHHhhHHHHHHHHhhhhhHHhHHHHHHHhhhhhhccCCCccccccccCCCCcceEEEEEEEeCCCCCHHHHHHH
Confidence 89999999999999999999999999999999999777677776665433333445577899999999999999999999
Q ss_pred HHHhccCCcccccccccCCeEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeeccccCCchhHHHHHHHHHHHhcCCcc
Q 015471 157 RATWMPQGDKRKKLEEEKGIVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHVEGYLELSAKTKIFFATAVALWDAD 236 (406)
Q Consensus 157 R~TW~~~~~~l~~l~~~~~i~v~FvlG~s~~~~~~~~~~L~~E~~~~~DIL~ldf~DsY~nLt~Ktl~~~~wa~~~~~a~ 236 (406)
|+|||++++.+.+++.+.+++++||+|++.++++.++++|++|+++|||||++||+|+|.|||+||+++|+|+.++++|+
T Consensus 159 R~TWg~~~~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAk 238 (408)
T PLN03193 159 RATWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAVAMWDAD 238 (408)
T ss_pred HHHHcCCcccccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEecccccccchHHHHHHHHHHHHcCCCe
Confidence 99999998777777778999999999999866678999999999999999999999999999999999999999999999
Q ss_pred EEEEecCceeeeHHHHHHHHHhcCCCCceEEEEeccCcccccCCCccccCcccccCCCCCccCCCcCCCceeecHHHHHH
Q 015471 237 FYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKSGPVLAQKGVRYHEPEYWKFGEEGNKYFRHATGQLYAISKDLASY 316 (406)
Q Consensus 237 fvlKvDDDvfVnv~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~Kwyvp~~~~fg~~~~~YP~Y~~G~gYvlS~dla~~ 316 (406)
||||+|||+|||+++|+.+|..++.++++|+|||+.+|++.+++.|||+|++|+||++++.|||||+|+|||||+|+|++
T Consensus 239 F~mK~DDDvfVnv~~L~~~L~~~~~~~rlYiG~m~~gPvr~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS~DLa~~ 318 (408)
T PLN03193 239 FYVKVDDDVHVNIATLGETLVRHRKKPRVYIGCMKSGPVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAISKDLASY 318 (408)
T ss_pred EEEEcCCCceEcHHHHHHHHHhcCCCCCEEEEecccCccccCCCCcCcCcccccccCccccCCCCCCcceEEehHHHHHH
Confidence 99999999999999999999988777889999999898877788899999999999889999999999999999999999
Q ss_pred HHHhccccCCCCcchHHHHHHHhcCCCeeeCCCCcccCCCCCcccccccCCcccccccccccccccchhHHHHhhccCch
Q 015471 317 ISINQHVLHKFANEDVSLGSWFIGLDAEHIDDRRLCCGTPPDCEWKAQAGNVCVASFDWSCSGICRSAERMKEVHRRCGE 396 (406)
Q Consensus 317 I~~~s~~l~~~~~EDV~lG~~l~gl~v~~~d~~~f~~~~~p~~e~k~~~~~~C~~~f~~~~sgic~~~~~l~~vH~~~p~ 396 (406)
|+.++..++.|++|||++|+||++|+|+|+|+++|||+++|+|+||++++++|.++|||+|||+|++++||.++|++|+|
T Consensus 319 I~~n~~~L~~y~~EDV~vG~Wl~~L~V~~vdd~~fcc~~~~~C~~~~~~~~~c~~~~~~~csg~c~~~~~~~~~h~~c~~ 398 (408)
T PLN03193 319 ISINQHVLHKYANEDVSLGSWFIGLDVEHIDDRRLCCGTPPDCEWKAQAGNICVASFDWSCSGICRSADRIKEVHRRCGE 398 (408)
T ss_pred HHhChhhhcccCcchhhhhhHhccCCceeeecccccCCCCccccccccCCCeeEEEecccCcccCCHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhhcC
Q 015471 397 GENALWSAAF 406 (406)
Q Consensus 397 ~~~~~W~~~~ 406 (406)
+..++|++.|
T Consensus 399 ~~~~~~~~~~ 408 (408)
T PLN03193 399 GENALWSATF 408 (408)
T ss_pred CcccceeecC
Confidence 9999999876
No 2
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-71 Score=524.30 Aligned_cols=265 Identities=68% Similarity=1.157 Sum_probs=255.4
Q ss_pred CCCeeEEEEEeCCCCCHHHHHHHHHHhccCCcccccccccCCeEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEee-cc
Q 015471 134 KRKYLMVVGINSAFSSRKRRDSVRATWMPQGDKRKKLEEEKGIVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLE-HV 212 (406)
Q Consensus 134 ~~~~~llI~V~S~p~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FvlG~s~~~~~~~~~~L~~E~~~~~DIL~ld-f~ 212 (406)
+++++++|+|.|++++.+||+++|+||+++++.+++++++++|.++|+||+. +.+++++++|++|+++|+|+|.+| ++
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~-~~g~~~~r~ie~E~~~~~DfllLd~h~ 86 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGTA-TLGASLDRALEEENAQHGDFLLLDRHE 86 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEeccC-CccHHHHHHHHHHHHhcCCeEeechhH
Confidence 7789999999999999999999999999999999999999999999999994 457899999999999999999999 99
Q ss_pred ccCCchhHHHHHHHHHHHhcCCccEEEEecCceeeeHHHHHHHHHhcCCCCceEEEEeccCcccccCCCccccCcccccC
Q 015471 213 EGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKSGPVLAQKGVRYHEPEYWKFG 292 (406)
Q Consensus 213 DsY~nLt~Ktl~~~~wa~~~~~a~fvlKvDDDvfVnv~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~Kwyvp~~~~fg 292 (406)
|+|.+|+.||+.+|.+|..+|+++||+|+|||+|||++.|...|++++.++++|||||++|||+.+++.|||+|+ |+||
T Consensus 87 E~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~Epe-Wkfg 165 (274)
T KOG2288|consen 87 EAYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPE-WKFG 165 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChh-hhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCCCccCCCcCCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhcCCCeeeCCCCcccCCCCCcccccccCCccccc
Q 015471 293 EEGNKYFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFIGLDAEHIDDRRLCCGTPPDCEWKAQAGNVCVAS 372 (406)
Q Consensus 293 ~~~~~YP~Y~~G~gYvlS~dla~~I~~~s~~l~~~~~EDV~lG~~l~gl~v~~~d~~~f~~~~~p~~e~k~~~~~~C~~~ 372 (406)
+.++ |+||+.|++|+||++||.+|+.|++.++.|.+|||++|.||+||+|+|+|++++||+++ |++.+++|.++
T Consensus 166 ~~g~-YfrhA~G~~YvlS~dLa~yi~in~~lL~~y~nEDVSlGaW~~gldV~h~dd~rlC~~~~-----~~~~~~~~~~~ 239 (274)
T KOG2288|consen 166 DNGN-YFRHATGGGYVLSKDLATYISINRQLLHKYANEDVSLGAWMIGLDVEHVDDPRLCCSTP-----KALAGMVCAAS 239 (274)
T ss_pred cccc-cchhccCceEEeeHHHHHHHHHhHHHHHhhccCCcccceeeeeeeeeEecCCcccccch-----hhhccceeeee
Confidence 8777 99999999999999999999999999999999999999999999999999999999874 77889999999
Q ss_pred ccccccccccchhHHHHhhccCchhHHHhhhhcC
Q 015471 373 FDWSCSGICRSAERMKEVHRRCGEGENALWSAAF 406 (406)
Q Consensus 373 f~~~~sgic~~~~~l~~vH~~~p~~~~~~W~~~~ 406 (406)
|+|+|+|+|+++.||..+|.+|.+...+.|.+.|
T Consensus 240 ~~~kcsglC~~~~rm~~~h~~~~~~~~~~~~~~~ 273 (274)
T KOG2288|consen 240 FDWKCSGLCKSEDRMLEVHKYDWEGKPATCCSRF 273 (274)
T ss_pred ecccccccCchHHHHhHHHHhhccCCCcccCccc
Confidence 9999999999999999999999999999998754
No 3
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=1.6e-53 Score=450.25 Aligned_cols=235 Identities=23% Similarity=0.344 Sum_probs=208.0
Q ss_pred CCCeeEEEEEeCCCCCHHHHHHHHHHhccCCcccccccccCCeEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeeccc
Q 015471 134 KRKYLMVVGINSAFSSRKRRDSVRATWMPQGDKRKKLEEEKGIVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHVE 213 (406)
Q Consensus 134 ~~~~~llI~V~S~p~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FvlG~s~~~~~~~~~~L~~E~~~~~DIL~ldf~D 213 (406)
.++++|||+|+|+|+|++||+|||+|||+... ..+..++++|++|.+. ++.++..|++|+++||||||+||+|
T Consensus 382 ~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~-----~~~~~v~~rFvVG~s~--n~~l~~~L~~Ea~~ygDIIq~dF~D 454 (636)
T PLN03133 382 KKPLDLFIGVFSTANNFKRRMAVRRTWMQYDA-----VRSGAVAVRFFVGLHK--NQMVNEELWNEARTYGDIQLMPFVD 454 (636)
T ss_pred CCceEEEEEEeCCcccHHHHHHHHHhhccccc-----cCCCceEEEEEEecCC--cHHHHHHHHHHHHHcCCeEEEeeec
Confidence 55789999999999999999999999999642 2345699999999986 4578899999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHhcCCccEEEEecCceeeeHHHHHHHHHhcCCCCceEEEEecc-CcccccCCCccccCcccccC
Q 015471 214 GYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKS-GPVLAQKGVRYHEPEYWKFG 292 (406)
Q Consensus 214 sY~nLt~Ktl~~~~wa~~~~~a~fvlKvDDDvfVnv~~L~~~L~~~~~~~~ly~G~~~~-~pv~r~~~~Kwyvp~~~~fg 292 (406)
+|+|||+||++++.|+..|++++|+||+|||+|||+++|+++|......+++|+|++.. ..|+|++.+|||+|.+.|
T Consensus 455 sY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~ey-- 532 (636)
T PLN03133 455 YYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPEEW-- 532 (636)
T ss_pred hhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHHHC--
Confidence 99999999999999998899999999999999999999999998877677899999874 578899999999998777
Q ss_pred CCCCccCCCcCCCceeecHHHHHHHHHhc--cccCCCCcchHHHHHHHh-----cCCCeeeCCCCcccCCCCCccccccc
Q 015471 293 EEGNKYFRHATGQLYAISKDLASYISINQ--HVLHKFANEDVSLGSWFI-----GLDAEHIDDRRLCCGTPPDCEWKAQA 365 (406)
Q Consensus 293 ~~~~~YP~Y~~G~gYvlS~dla~~I~~~s--~~l~~~~~EDV~lG~~l~-----gl~v~~~d~~~f~~~~~p~~e~k~~~ 365 (406)
|.+.|||||+|+|||||+|+|++|+.++ ..++.|++||||+|+|++ |+.+.+.++.+||+
T Consensus 533 -p~~~YPpYasG~gYVlS~Dla~~L~~~s~s~~l~~f~lEDVyvGi~l~~l~k~gl~v~~~~~~r~~~------------ 599 (636)
T PLN03133 533 -PEETYPPWAHGPGYVVSRDIAKEVYKRHKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYENDGRIYN------------ 599 (636)
T ss_pred -CCCCCCCCCCcCEEEEcHHHHHHHHHhhhhcccCcCChhhHhHHHHHHHhcccCCCceeeCCCcccC------------
Confidence 7889999999999999999999999875 579999999999999985 66677888877753
Q ss_pred CCcccccccccccccccchhHHHHhhccCchhHHHhhhhc
Q 015471 366 GNVCVASFDWSCSGICRSAERMKEVHRRCGEGENALWSAA 405 (406)
Q Consensus 366 ~~~C~~~f~~~~sgic~~~~~l~~vH~~~p~~~~~~W~~~ 405 (406)
+.|.. .++.+|...|.+|..+|+..
T Consensus 600 -~~C~~--------------~~i~~H~~sP~eM~~lW~~l 624 (636)
T PLN03133 600 -EGCKD--------------GYVVAHYQSPREMLCLWQKL 624 (636)
T ss_pred -CcCCC--------------CeEEEecCCHHHHHHHHHHH
Confidence 23642 45679999999999999863
No 4
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-52 Score=420.37 Aligned_cols=239 Identities=23% Similarity=0.322 Sum_probs=215.9
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhccCCcccccccccCCeEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeeccccC
Q 015471 136 KYLMVVGINSAFSSRKRRDSVRATWMPQGDKRKKLEEEKGIVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHVEGY 215 (406)
Q Consensus 136 ~~~llI~V~S~p~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FvlG~s~~~~~~~~~~L~~E~~~~~DIL~ldf~DsY 215 (406)
.++++|+|+|+++|++||++||+|||++.. ..+..++++|++|..++.+ .++..|.+|++.||||||+||.|+|
T Consensus 94 ~~~lLl~V~S~~~~farR~aiR~TW~~~~~-----v~~~~v~~~FLvG~~~~~~-~~~~~l~~Ea~~ygDIi~~df~Dty 167 (349)
T KOG2287|consen 94 PPELLLLVKSAPDNFARRNAIRKTWGNENN-----VRGGRVRVLFLVGLPSNED-KLNKLLADEARLYGDIIQVDFEDTY 167 (349)
T ss_pred CceEEEEEecCCCCHHHHHHHHHHhcCccc-----cCCCcEEEEEEecCCCcHH-HHHHHHHHHHHHhCCEEEEecccch
Confidence 489999999999999999999999999863 3577899999999997543 5689999999999999999999999
Q ss_pred CchhHHHHHHHHHHHh-cCCccEEEEecCceeeeHHHHHHHHHhc-CCCCceEEEEecc-CcccccCCCccccCcccccC
Q 015471 216 LELSAKTKIFFATAVA-LWDADFYVKVDDDVHVNIATLGATLARH-RSKPRVYIGCMKS-GPVLAQKGVRYHEPEYWKFG 292 (406)
Q Consensus 216 ~nLt~Ktl~~~~wa~~-~~~a~fvlKvDDDvfVnv~~L~~~L~~~-~~~~~ly~G~~~~-~pv~r~~~~Kwyvp~~~~fg 292 (406)
.|||+|+++++.|+.+ |++|+|++|+|||+|||+++|+++|..+ .+.+.+|.|.+.. .+|+|++.+|||+|+..|
T Consensus 168 ~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~~~y-- 245 (349)
T KOG2287|consen 168 FNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPESEY-- 245 (349)
T ss_pred hchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCHHHC--
Confidence 9999999999999997 9999999999999999999999999999 7888999999864 589999999999999888
Q ss_pred CCCCccCCCcCCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhcC-CCeeeCCCCcccCCCCCcccccccCCcccc
Q 015471 293 EEGNKYFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFIGL-DAEHIDDRRLCCGTPPDCEWKAQAGNVCVA 371 (406)
Q Consensus 293 ~~~~~YP~Y~~G~gYvlS~dla~~I~~~s~~l~~~~~EDV~lG~~l~gl-~v~~~d~~~f~~~~~p~~e~k~~~~~~C~~ 371 (406)
+...|||||+|+|||+|+++|+.|+.++..++.+++|||++|+|++.. ++.+++...|.... ...++|.+
T Consensus 246 -~~~~YP~Y~sG~gYvis~~~a~~l~~~s~~~~~~~iEDV~~g~~l~~~~gi~~~~~~~~~~~~--------~~~~~~~~ 316 (349)
T KOG2287|consen 246 -PCSVYPPYASGPGYVISGDAARRLLKASKHLKFFPIEDVFVGGCLAEDLGIKPVNHPGFFEIP--------LSFDPCCY 316 (349)
T ss_pred -CCCCCCCcCCCceeEecHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCcccCccccccc--------ccCCCCcc
Confidence 778999999999999999999999999999999999999999999876 99988877653211 13345655
Q ss_pred cccccccccccchhHHHHhhccCchhHHHhhhh
Q 015471 372 SFDWSCSGICRSAERMKEVHRRCGEGENALWSA 404 (406)
Q Consensus 372 ~f~~~~sgic~~~~~l~~vH~~~p~~~~~~W~~ 404 (406)
+.++.+|...|++|..+|+.
T Consensus 317 -------------~~~~~~H~~~p~e~~~~w~~ 336 (349)
T KOG2287|consen 317 -------------RDLLAVHRLSPNEMIYLWKK 336 (349)
T ss_pred -------------cceEEEecCCHHHHHHHHHH
Confidence 78999999999999999975
No 5
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=8.8e-48 Score=356.46 Aligned_cols=191 Identities=29% Similarity=0.380 Sum_probs=172.4
Q ss_pred HHHHHHHHHhccCCcccccccccCCeEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeeccccCCchhHHHHHHHHHHH
Q 015471 151 KRRDSVRATWMPQGDKRKKLEEEKGIVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHVEGYLELSAKTKIFFATAV 230 (406)
Q Consensus 151 ~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FvlG~s~~~~~~~~~~L~~E~~~~~DIL~ldf~DsY~nLt~Ktl~~~~wa~ 230 (406)
+||++||+|||+... ....+++++||+|.+.+.+..++..|.+|+++|+||||+||.|+|.|||+|++++|+|+.
T Consensus 1 ~rR~~IR~TW~~~~~-----~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~ 75 (195)
T PF01762_consen 1 ERRQAIRETWGNQRN-----FKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWAS 75 (195)
T ss_pred ChHHHHHHHHhcccc-----cCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHH
Confidence 589999999999863 245789999999999855567888899999999999999999999999999999999999
Q ss_pred h-cCCccEEEEecCceeeeHHHHHHHHHhc--CCCC-ceEEEEeccCcccccCCCccccCcccccCCCCCccCCCcCCCc
Q 015471 231 A-LWDADFYVKVDDDVHVNIATLGATLARH--RSKP-RVYIGCMKSGPVLAQKGVRYHEPEYWKFGEEGNKYFRHATGQL 306 (406)
Q Consensus 231 ~-~~~a~fvlKvDDDvfVnv~~L~~~L~~~--~~~~-~ly~G~~~~~pv~r~~~~Kwyvp~~~~fg~~~~~YP~Y~~G~g 306 (406)
+ |++++||+|+|||+|||+++|.++|... ...+ .+|.+++..++++|++.+|||+|+..| +.+.|||||+|++
T Consensus 76 ~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y---~~~~yP~y~~G~~ 152 (195)
T PF01762_consen 76 KHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEY---PDDYYPPYCSGGG 152 (195)
T ss_pred hhCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeeec---ccccCCCcCCCCe
Confidence 7 7789999999999999999999999987 3333 445455667789999999999999887 7889999999999
Q ss_pred eeecHHHHHHHHHhccccCCCCcchHHHHHHHhcCCCeeeCCC
Q 015471 307 YAISKDLASYISINQHVLHKFANEDVSLGSWFIGLDAEHIDDR 349 (406)
Q Consensus 307 YvlS~dla~~I~~~s~~l~~~~~EDV~lG~~l~gl~v~~~d~~ 349 (406)
|+||+++|+.|+.++..++.+++|||++|+|+.+++|+++|++
T Consensus 153 yvls~~~v~~i~~~~~~~~~~~~eDv~iGi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 153 YVLSSDVVKRIYKASSHTPFFPLEDVFIGILAEKLGIKPIHDP 195 (195)
T ss_pred EEecHHHHHHHHHHhhcCCCCCchHHHHHHHHHHCCCCccCCC
Confidence 9999999999999999999999999999999999999999864
No 6
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=99.98 E-value=4.3e-32 Score=270.24 Aligned_cols=194 Identities=20% Similarity=0.278 Sum_probs=159.3
Q ss_pred ccCCCCeeEEEEEeCCCCC--HHHHHHHHHHhccCCccc-ccccccCCeEEEEEeecCCCCCCchHHHHHHHHhhcCCEE
Q 015471 131 LKGKRKYLMVVGINSAFSS--RKRRDSVRATWMPQGDKR-KKLEEEKGIVMRFVIGHSATSGGILDRAIEAEDKKHGDFL 207 (406)
Q Consensus 131 ~~~~~~~~llI~V~S~p~~--~~rR~aIR~TW~~~~~~l-~~l~~~~~i~v~FvlG~s~~~~~~~~~~L~~E~~~~~DIL 207 (406)
....+..++++||.|..++ +.||++.|+||.+-.... +...-...+.++|++|..++.+-..+.+|.+|+++|+|||
T Consensus 74 ~w~~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIV 153 (382)
T PTZ00210 74 VWKAQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDII 153 (382)
T ss_pred HhccCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEE
Confidence 3456778999999999888 899999999999875421 1111134577899999998766789999999999999999
Q ss_pred Eeec------------------cccCCchhHHHHHHHHHHHh-cCCccEEEEecCceeeeHHHHHHHHHhcCCCCceEEE
Q 015471 208 RLEH------------------VEGYLELSAKTKIFFATAVA-LWDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIG 268 (406)
Q Consensus 208 ~ldf------------------~DsY~nLt~Ktl~~~~wa~~-~~~a~fvlKvDDDvfVnv~~L~~~L~~~~~~~~ly~G 268 (406)
++|| .|++.|+|+||+++|+|+.+ ||+++|++|+|||+|||+++++++|... ++..+|+|
T Consensus 154 ilpf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~-prr~LY~G 232 (382)
T PTZ00210 154 TLPTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVM-PRHGLYMG 232 (382)
T ss_pred EEecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhC-CCCceEEE
Confidence 9999 77788899999999999998 8899999999999999999999999665 55679999
Q ss_pred EeccC-cccccCCCccccCcccccCCCCCccCCCcCCCceeecHHHHHHHHHhccc--c---------------CCCCcc
Q 015471 269 CMKSG-PVLAQKGVRYHEPEYWKFGEEGNKYFRHATGQLYAISKDLASYISINQHV--L---------------HKFANE 330 (406)
Q Consensus 269 ~~~~~-pv~r~~~~Kwyvp~~~~fg~~~~~YP~Y~~G~gYvlS~dla~~I~~~s~~--l---------------~~~~~E 330 (406)
.+... .+. .+.|||||+|+||+||+|+|+.|+...+. + -.+.+|
T Consensus 233 ~v~~~~~p~------------------Rd~~PpY~~G~gYvLSrDVA~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~E 294 (382)
T PTZ00210 233 RYNYYNRIW------------------RRNQLTYVNGYCITLSRDTAQAIISYKPLERLVNMPFSMWDYFDFLDLGMFYE 294 (382)
T ss_pred eeCCCCccc------------------cCCCCCccccceeeccHHHHHHHHhhChHhHhhcCCCchHHHHHHHHhhcCch
Confidence 87531 111 12479999999999999999999987543 2 235799
Q ss_pred hHHHHHHH-hcCCC
Q 015471 331 DVSLGSWF-IGLDA 343 (406)
Q Consensus 331 DV~lG~~l-~gl~v 343 (406)
|+.+|.+| .++.-
T Consensus 295 DiMvG~vLr~~~k~ 308 (382)
T PTZ00210 295 DVMVGMILREKVVY 308 (382)
T ss_pred HHHHHHHHHHhcCc
Confidence 99999999 45543
No 7
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=99.95 E-value=8.4e-29 Score=204.93 Aligned_cols=93 Identities=63% Similarity=1.033 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHHHHhHhhhccccCCCcccccccccc-ccccccccccccCCcccccccCCcchhhhchHhhHHHHHHhhh
Q 015471 19 SKKWTLLLCIGCFCAGMLFSDRMWTVPEVRDVSRGA-GFEDEKLKLVSEGCDSVMNVKREPAEILGEVSKTHHAIQALDK 97 (406)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (406)
|+||+++||++|||+|+|||||||..||+.+....+ +.+++++++++++|++++.++.+++++|++|++||+|||+|||
T Consensus 1 S~kw~l~Lc~~SF~~G~lft~R~W~~pe~~~~~~~~~~~~~~~l~l~s~~c~~k~~~~~~~~di~~eV~kTh~aIq~LdK 80 (95)
T PF13334_consen 1 SRKWVLLLCIASFCAGMLFTNRMWTVPESKEISRRSSQDAEERLQLVSEDCDPKKLKESDQRDIMGEVSKTHEAIQSLDK 80 (95)
T ss_pred CchHHHHHHHHHHHHHHHHhcccccCCccccchhhhccccccccccccccccccccccCCccchhHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999988877543 3678899999999998774467899999999999999999999
Q ss_pred hHHHHHHHHHHHhh
Q 015471 98 TISNLEMELAAARA 111 (406)
Q Consensus 98 ~i~~le~el~~~~~ 111 (406)
+||+||||||+||+
T Consensus 81 tIS~LEMELAaARa 94 (95)
T PF13334_consen 81 TISSLEMELAAARA 94 (95)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999997
No 8
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.79 E-value=5.8e-19 Score=170.76 Aligned_cols=190 Identities=17% Similarity=0.229 Sum_probs=99.8
Q ss_pred eeEEEEEeCCCCCH-HHHHHHHHHhccCCcccccccccCCeEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeeccccC
Q 015471 137 YLMVVGINSAFSSR-KRRDSVRATWMPQGDKRKKLEEEKGIVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHVEGY 215 (406)
Q Consensus 137 ~~llI~V~S~p~~~-~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FvlG~s~~~~~~~~~~L~~E~~~~~DIL~ldf~DsY 215 (406)
-+|+|+|+|++++. .|-.+|++||++.+.. ..|+..... +..|..+ ...+++.-+...++
T Consensus 6 ~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~~-----------~~~ifsd~~------d~~l~~~--~~~~l~~~~~~~~~ 66 (252)
T PF02434_consen 6 DDIFIAVKTTKKFHKTRAPAIKQTWAKRCNK-----------QTFIFSDAE------DPSLPTV--TGVHLVNPNCDAGH 66 (252)
T ss_dssp GGEEEEEE--GGGTTTTHHHHHHTGGGGSGG-----------GEEEEESS--------HHHHHH--HGGGEEE-------
T ss_pred ccEEEEEEeCHHHHHHHHHHHHHHHHhhcCC-----------ceEEecCcc------ccccccc--cccccccCCCcchh
Confidence 37899999999855 5669999999999742 234322211 2334333 23356555555555
Q ss_pred CchhHHHHHHHHHHHh-cCCccEEEEecCceeeeHHHHHHHHHhcCCCCceEEEEecc-CcccccCCCccccCcccccCC
Q 015471 216 LELSAKTKIFFATAVA-LWDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKS-GPVLAQKGVRYHEPEYWKFGE 293 (406)
Q Consensus 216 ~nLt~Ktl~~~~wa~~-~~~a~fvlKvDDDvfVnv~~L~~~L~~~~~~~~ly~G~~~~-~pv~r~~~~Kwyvp~~~~fg~ 293 (406)
...+++.++.+.+... .++++|++++|||+||++++|+.+|..+++..++|+|.... ++...-.......+
T Consensus 67 ~~~~~~~~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~~~~~~~~~~------- 139 (252)
T PF02434_consen 67 CRKTLSCKMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEIIHRFNPNKS------- 139 (252)
T ss_dssp ------HHHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE-----------------------
T ss_pred hHHHHHHHHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccceeecccccccc-------
Confidence 5445555555555333 46899999999999999999999999999999999999743 22211000000000
Q ss_pred CCCccCCCc-CCCceeecHHHHHHHHHh---ccccCCC----CcchHHHHHHHhc-CCCeeeCCCCccc
Q 015471 294 EGNKYFRHA-TGQLYAISKDLASYISIN---QHVLHKF----ANEDVSLGSWFIG-LDAEHIDDRRLCC 353 (406)
Q Consensus 294 ~~~~YP~Y~-~G~gYvlS~dla~~I~~~---s~~l~~~----~~EDV~lG~~l~g-l~v~~~d~~~f~~ 353 (406)
...-..|+ +|+||+||+.++++|... ....... ..||+.+|.|+.. |||+..+.+.|+.
T Consensus 140 -~~~~~~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs 207 (252)
T PF02434_consen 140 -KDSGFWFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHS 207 (252)
T ss_dssp -------EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---
T ss_pred -CcCceEeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcc
Confidence 11222444 679999999999999542 1222222 3899999999988 9999888888864
No 9
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.70 E-value=1.4e-16 Score=161.28 Aligned_cols=170 Identities=22% Similarity=0.308 Sum_probs=132.2
Q ss_pred CCCCeeEEEEEeCCCCCHH-HHHHHHHHhccCCcccccccccCCeEEEEEe---ecCCCCCCchHHHHHHHHhhcCCEEE
Q 015471 133 GKRKYLMVVGINSAFSSRK-RRDSVRATWMPQGDKRKKLEEEKGIVMRFVI---GHSATSGGILDRAIEAEDKKHGDFLR 208 (406)
Q Consensus 133 ~~~~~~llI~V~S~p~~~~-rR~aIR~TW~~~~~~l~~l~~~~~i~v~Fvl---G~s~~~~~~~~~~L~~E~~~~~DIL~ 208 (406)
..++..+++.|.|++.+.. |-+++-+||++.++. ..|+. .... ..+ ..|.
T Consensus 87 l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~~-----------~~f~s~~~s~~~--------------~~f-~~v~ 140 (364)
T KOG2246|consen 87 LSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCDK-----------GIFFSPTLSKDD--------------SRF-PTVY 140 (364)
T ss_pred cCCCceEEEEEEecCcCceeehhhhhcccccccCc-----------ceecCccCCCCC--------------CcC-ceee
Confidence 3567899999999988766 558999999999862 34554 3322 112 2347
Q ss_pred eeccccCCchhHHHHHHHHHHHh--cCCccEEEEecCceeeeHHHHHHHHHhcCCCCceEEEEeccCcccccCCCccccC
Q 015471 209 LEHVEGYLELSAKTKIFFATAVA--LWDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKSGPVLAQKGVRYHEP 286 (406)
Q Consensus 209 ldf~DsY~nLt~Ktl~~~~wa~~--~~~a~fvlKvDDDvfVnv~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~Kwyvp 286 (406)
.+..|+|+++..||..+|+++.+ -.+++|++|+|||||+.++||..+|..+++++++|+|+.. |-|.-
T Consensus 141 ~~~~~g~~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~----------~~~~~ 210 (364)
T KOG2246|consen 141 YNLPDGYRSLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRS----------KSYFQ 210 (364)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEecccc----------ccccc
Confidence 88999999999999999999985 3799999999999999999999999999999999999863 11111
Q ss_pred cccccCCCCCccCCCcCCCceeecHHHHHHHHHhccc-----cCCCC--cchHHHHHHHhcCCCeeeCCC
Q 015471 287 EYWKFGEEGNKYFRHATGQLYAISKDLASYISINQHV-----LHKFA--NEDVSLGSWFIGLDAEHIDDR 349 (406)
Q Consensus 287 ~~~~fg~~~~~YP~Y~~G~gYvlS~dla~~I~~~s~~-----l~~~~--~EDV~lG~~l~gl~v~~~d~~ 349 (406)
+.|- .+|+||++|+++.+.+++.... ...++ .||+-+|.||+.+||...|.+
T Consensus 211 ---------~~y~--~g~ag~~ls~aa~~~la~~l~~~~~~C~~~~~~~~eD~~i~~Cl~~~GV~~~d~~ 269 (364)
T KOG2246|consen 211 ---------NGYS--SGGAGYVLSFAALRRLAERLLNNEDKCPQRYPSYGEDRRIGRCLAEVGVPATDER 269 (364)
T ss_pred ---------cccc--cCCCCcceeHHHHHHHHHHHhcchhhcccccCCchhHHHHHHHHHHhCCCccCch
Confidence 1232 5899999999999998875321 23343 899999999999999876663
No 10
>PLN03153 hypothetical protein; Provisional
Probab=99.15 E-value=4.6e-10 Score=116.91 Aligned_cols=180 Identities=19% Similarity=0.181 Sum_probs=112.2
Q ss_pred eeEEEEEeCCCCCH-HHHHHHHHHhccCCcccccccccCCeEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeecccc-
Q 015471 137 YLMVVGINSAFSSR-KRRDSVRATWMPQGDKRKKLEEEKGIVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHVEG- 214 (406)
Q Consensus 137 ~~llI~V~S~p~~~-~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FvlG~s~~~~~~~~~~L~~E~~~~~DIL~ldf~Ds- 214 (406)
-.|+++|.++.+.. +|+..|+.+|.+..- + .++|+.....+. ..+..| - -+.+- .|+
T Consensus 122 ~hIvF~I~~s~~~w~~R~~yik~wW~p~~~--------r--g~v~ld~~~~~~--~~~~~~-------P-~i~is-~d~s 180 (537)
T PLN03153 122 NHIMFGIAGSSQLWKRRKELVRLWWRPNQM--------R--GHVWLEEQVSPE--EGDDSL-------P-PIMVS-EDTS 180 (537)
T ss_pred ccEEEEEEEchhhhhhhhhhhhhhcCcccc--------e--eEEEecccCCCC--CCcCCC-------C-CEEeC-CCcc
Confidence 47888998877755 577999999998531 1 245554432210 000000 0 01110 111
Q ss_pred ---CCc---hhHHHH--HHHHHHH-h-cCCccEEEEecCceeeeHHHHHHHHHhcCCCCceEEEEeccCcccccCCCccc
Q 015471 215 ---YLE---LSAKTK--IFFATAV-A-LWDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKSGPVLAQKGVRYH 284 (406)
Q Consensus 215 ---Y~n---Lt~Ktl--~~~~wa~-~-~~~a~fvlKvDDDvfVnv~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~Kwy 284 (406)
|.| ...... .+...+. . .++++||+++|||||+.++||+..|..++++++.|+|.....
T Consensus 181 ~f~y~~~~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~----------- 249 (537)
T PLN03153 181 RFRYTNPTGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSES----------- 249 (537)
T ss_pred cccccCCCCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecccccc-----------
Confidence 222 222111 1233333 3 589999999999999999999999999999999999976310
Q ss_pred cCcccccCCCCCccCCC-cCCCceeecHHHHHHHHHhccc-cCC---CCcchHHHHHHHhcCCCeeeCCCCcccC
Q 015471 285 EPEYWKFGEEGNKYFRH-ATGQLYAISKDLASYISINQHV-LHK---FANEDVSLGSWFIGLDAEHIDDRRLCCG 354 (406)
Q Consensus 285 vp~~~~fg~~~~~YP~Y-~~G~gYvlS~dla~~I~~~s~~-l~~---~~~EDV~lG~~l~gl~v~~~d~~~f~~~ 354 (406)
.+...+| .| .| -+|+||+||+.+++.|...... ... ..-+|.-||.|+..+||......+|+..
T Consensus 250 ~~qn~~f-----~~-~fA~GGAG~~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~gfhQ~ 318 (537)
T PLN03153 250 HSANSYF-----SH-NMAFGGGGIAISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPGFHQW 318 (537)
T ss_pred ccccccc-----cc-ccccCCceEEEcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCCcccc
Confidence 0000111 11 12 4899999999999999875322 221 2358888999999899888777777653
No 11
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.001 Score=69.63 Aligned_cols=155 Identities=16% Similarity=0.165 Sum_probs=102.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhccCCcccccccccCCeEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeeccccCCc
Q 015471 138 LMVVGINSAFSSRKRRDSVRATWMPQGDKRKKLEEEKGIVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHVEGYLE 217 (406)
Q Consensus 138 ~llI~V~S~p~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FvlG~s~~~~~~~~~~L~~E~~~~~DIL~ldf~DsY~n 217 (406)
+++++|+|. ..---+|-.|=+..-+ ++.|+++.+...+ |.-++..+-.|..
T Consensus 27 rl~~aVmte---~tlA~a~NrT~ahhvp-----------rv~~F~~~~~i~~---------------~~a~~~~vs~~d~ 77 (681)
T KOG3708|consen 27 RLMAAVMTE---STLALAINRTLAHHVP-----------RVHLFADSSRIDN---------------DLAQLTNVSPYDL 77 (681)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHhhcc-----------eeEEeeccccccc---------------cHhhccccCcccc
Confidence 566777772 2556777788776632 4668887765321 1122222333332
Q ss_pred hhHHH-HHHHHHHHh--cCCccEEEEecCceeeeHHHHHHHHHhcCCCCceEEEEeccCcccccCCCccccCcccccCCC
Q 015471 218 LSAKT-KIFFATAVA--LWDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKSGPVLAQKGVRYHEPEYWKFGEE 294 (406)
Q Consensus 218 Lt~Kt-l~~~~wa~~--~~~a~fvlKvDDDvfVnv~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~Kwyvp~~~~fg~~ 294 (406)
-..|+ .+.+.++.+ .-++|||+-+-|+||||...|+.++....-+.++|+|.-. --| +
T Consensus 78 r~~~~~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~------------------~~g-s 138 (681)
T KOG3708|consen 78 RGQKTHSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEA------------------EDG-S 138 (681)
T ss_pred CccccHHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhh------------------hCc-c
Confidence 23344 345666665 3589999999999999999999999988888899998211 001 1
Q ss_pred CCccCCCc-CCCceeecHHHHHHHHHhccccC---CCCcchHHHHHHHh---cCCCee
Q 015471 295 GNKYFRHA-TGQLYAISKDLASYISINQHVLH---KFANEDVSLGSWFI---GLDAEH 345 (406)
Q Consensus 295 ~~~YP~Y~-~G~gYvlS~dla~~I~~~s~~l~---~~~~EDV~lG~~l~---gl~v~~ 345 (406)
+. | .|.||+||+.++..+-.+-.-.. .-.-+|+.+|.|+. +++.+.
T Consensus 139 ~r-----C~l~~G~LLS~s~l~~lrnnle~C~~~~lsad~d~~lgrCi~~At~v~C~~ 191 (681)
T KOG3708|consen 139 GR-----CRLDTGMLLSQSLLHALRNNLEGCRNDILSADPDEWLGRCIQDATGVGCKP 191 (681)
T ss_pred Cc-----cccccceeecHHHHHHHHhhHHHhhcccccCCcHHHHHHHHHHhhcCCccc
Confidence 11 5 58999999999999988744322 23567899999994 555443
No 12
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=95.93 E-value=0.15 Score=46.86 Aligned_cols=93 Identities=14% Similarity=0.145 Sum_probs=52.9
Q ss_pred EEEeCCCCCHHHHHHHHHHhccCCcccccccccCCeEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEee-----ccccC
Q 015471 141 VGINSAFSSRKRRDSVRATWMPQGDKRKKLEEEKGIVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLE-----HVEGY 215 (406)
Q Consensus 141 I~V~S~p~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FvlG~s~~~~~~~~~~L~~E~~~~~DIL~ld-----f~DsY 215 (406)
|.|.|-+...+||+.|.+..... ++.+-|+-|..... +.. .+....+..-.... ..-+-
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~-----------~~~~e~~~Avdg~~---l~~--~~~~~~~~~~~~~~~~~~~lt~gE 67 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKL-----------GINFEFFDAVDGRD---LSE--DELFRRYDPELFKKRYGRPLTPGE 67 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc-----------CCceEEEEeecccc---cch--HHHHHHhhhhhhhccccccCCcce
Confidence 45667788899999998877654 34566777765431 111 11111121111110 01111
Q ss_pred CchhHHHHHHHHHHHhcCCccEEEEecCceeeeHH
Q 015471 216 LELSAKTKIFFATAVALWDADFYVKVDDDVHVNIA 250 (406)
Q Consensus 216 ~nLt~Ktl~~~~wa~~~~~a~fvlKvDDDvfVnv~ 250 (406)
-.=.+-.+..++-+++. +.++.+-..||+.++.+
T Consensus 68 iGC~lSH~~~w~~~v~~-~~~~~lIlEDDv~~~~~ 101 (200)
T PF01755_consen 68 IGCALSHIKAWQRIVDS-GLEYALILEDDVIFDPD 101 (200)
T ss_pred EeehhhHHHHHHHHHHc-CCCeEEEEecccccccc
Confidence 11134566677777663 68999999999999965
No 13
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=94.53 E-value=0.82 Score=42.05 Aligned_cols=189 Identities=13% Similarity=0.002 Sum_probs=84.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhccCCcccccccccCCeEEEEEeecCCCCCCchHHHHHHHHhhcCCE--EEeeccccC
Q 015471 138 LMVVGINSAFSSRKRRDSVRATWMPQGDKRKKLEEEKGIVMRFVIGHSATSGGILDRAIEAEDKKHGDF--LRLEHVEGY 215 (406)
Q Consensus 138 ~llI~V~S~p~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FvlG~s~~~~~~~~~~L~~E~~~~~DI--L~ldf~DsY 215 (406)
.+.|+|.+.-....-++.|+.--... ...+.++++...+. +.....+++-...+... -.+...
T Consensus 2 ~v~Vvip~~~~~~~l~~~l~sl~~~~---------~~~~~v~vvd~~~~---~~~~~~~~~~~~~~~~~~v~vi~~~--- 66 (228)
T PF13641_consen 2 RVSVVIPAYNEDDVLRRCLESLLAQD---------YPRLEVVVVDDGSD---DETAEILRALAARYPRVRVRVIRRP--- 66 (228)
T ss_dssp -EEEE--BSS-HHHHHHHHHHHTTSH---------HHTEEEEEEEE-SS---S-GCTTHHHHHHTTGG-GEEEEE-----
T ss_pred EEEEEEEecCCHHHHHHHHHHHHcCC---------CCCeEEEEEECCCC---hHHHHHHHHHHHHcCCCceEEeecC---
Confidence 35555555433333444555444221 12356666664443 22223344444455542 222211
Q ss_pred Cchh--HHHHHHHHHHHhcCCccEEEEecCceeeeHHHHHHHHHhc-CCCCceEEEEeccCc--ccccCC-----Ccccc
Q 015471 216 LELS--AKTKIFFATAVALWDADFYVKVDDDVHVNIATLGATLARH-RSKPRVYIGCMKSGP--VLAQKG-----VRYHE 285 (406)
Q Consensus 216 ~nLt--~Ktl~~~~wa~~~~~a~fvlKvDDDvfVnv~~L~~~L~~~-~~~~~ly~G~~~~~p--v~r~~~-----~Kwyv 285 (406)
.|.- .|.. .+.++.+.-+.+|++.+|||+.+.++.|..++... .+.-.+..|.....+ ..-... ..|+.
T Consensus 67 ~~~g~~~k~~-a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (228)
T PF13641_consen 67 RNPGPGGKAR-ALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHL 145 (228)
T ss_dssp --HHHHHHHH-HHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETT
T ss_pred CCCCcchHHH-HHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhh
Confidence 2222 3333 44666555579999999999999999988888776 333344434432111 000000 01111
Q ss_pred CcccccCCCCCccCCCcCCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhcCC--CeeeCC
Q 015471 286 PEYWKFGEEGNKYFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFIGLD--AEHIDD 348 (406)
Q Consensus 286 p~~~~fg~~~~~YP~Y~~G~gYvlS~dla~~I~~~s~~l~~~~~EDV~lG~~l~gl~--v~~~d~ 348 (406)
.. ........ . .++.|++.++.+++++.+-.-.. ....||..++.-+...| +...++
T Consensus 146 ~~-~~~~~~~~-~-~~~~G~~~~~rr~~~~~~g~fd~---~~~~eD~~l~~r~~~~G~~~~~~~~ 204 (228)
T PF13641_consen 146 RF-RSGRRALG-V-AFLSGSGMLFRRSALEEVGGFDP---FILGEDFDLCLRLRAAGWRIVYAPD 204 (228)
T ss_dssp TS--TT-B------S-B--TEEEEEHHHHHHH-S--S---SSSSHHHHHHHHHHHTT--EEEEEE
T ss_pred hh-hhhhcccc-e-eeccCcEEEEEHHHHHHhCCCCC---CCcccHHHHHHHHHHCCCcEEEECC
Confidence 10 01111111 1 34679999999999999853222 34469999998886444 444443
No 14
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.41 E-value=1.3 Score=40.26 Aligned_cols=166 Identities=16% Similarity=-0.019 Sum_probs=84.2
Q ss_pred eEEEEEeecCCCCCCchHHHHH-HHHhhcCCEEEeeccccCCchhHHHHHHHHHHHhcCCccEEEEecCceeeeHHHHHH
Q 015471 176 IVMRFVIGHSATSGGILDRAIE-AEDKKHGDFLRLEHVEGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLGA 254 (406)
Q Consensus 176 i~v~FvlG~s~~~~~~~~~~L~-~E~~~~~DIL~ldf~DsY~nLt~Ktl~~~~wa~~~~~a~fvlKvDDDvfVnv~~L~~ 254 (406)
+.++.|-..+. +.....+. .....+..+..++..+ -.|.. |. ..+.++.+..+.+|++.+|+|..+.++.|..
T Consensus 29 ~eiivvdd~s~---d~t~~~~~~~~~~~~~~v~~~~~~~-~~~~g-~~-~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~ 102 (229)
T cd04192 29 FEVILVDDHST---DGTVQILEFAAAKPNFQLKILNNSR-VSISG-KK-NALTTAIKAAKGDWIVTTDADCVVPSNWLLT 102 (229)
T ss_pred eEEEEEcCCCC---cChHHHHHHHHhCCCcceEEeeccC-cccch-hH-HHHHHHHHHhcCCEEEEECCCcccCHHHHHH
Confidence 56666665543 22333343 1222233455555443 22322 22 3355555556899999999999999988888
Q ss_pred HHHhcCC-CCceEEEEeccCccc---cc-CCCccccCcccccCCCCCccCCCcCCCceeecHHHHHHHHHhccccCCCCc
Q 015471 255 TLARHRS-KPRVYIGCMKSGPVL---AQ-KGVRYHEPEYWKFGEEGNKYFRHATGQLYAISKDLASYISINQHVLHKFAN 329 (406)
Q Consensus 255 ~L~~~~~-~~~ly~G~~~~~pv~---r~-~~~Kwyvp~~~~fg~~~~~YP~Y~~G~gYvlS~dla~~I~~~s~~l~~~~~ 329 (406)
++..... ...++.|.....+.- .. ....+........+.....++..+.|+++++++++.+.+---.... ....
T Consensus 103 l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~ggf~~~~-~~~~ 181 (229)
T cd04192 103 FVAFIQKEQIGLVAGPVIYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANMAYRKEAFFEVGGFEGND-HIAS 181 (229)
T ss_pred HHHHhhcCCCcEEeeeeeecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceEEEEHHHHHHhcCCcccc-cccc
Confidence 8875432 334455543211100 00 0000000000000001234555678999999999999875432222 2346
Q ss_pred chHHHHHHH--hcC-CCeeeCC
Q 015471 330 EDVSLGSWF--IGL-DAEHIDD 348 (406)
Q Consensus 330 EDV~lG~~l--~gl-~v~~~d~ 348 (406)
||..++.-+ .+. .+....+
T Consensus 182 eD~~~~~~~~~~g~~~~~~~~~ 203 (229)
T cd04192 182 GDDELLLAKVASKYPKVAYLKN 203 (229)
T ss_pred CCHHHHHHHHHhCCCCEEEeeC
Confidence 776665433 455 4554443
No 15
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=94.24 E-value=1.6 Score=44.45 Aligned_cols=189 Identities=14% Similarity=0.073 Sum_probs=94.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhccCCcccccccccCCeEEEEEeecCCCCCCchHHHHHHHHhhcCC--EEEeecccc
Q 015471 137 YLMVVGINSAFSSRKRRDSVRATWMPQGDKRKKLEEEKGIVMRFVIGHSATSGGILDRAIEAEDKKHGD--FLRLEHVEG 214 (406)
Q Consensus 137 ~~llI~V~S~p~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FvlG~s~~~~~~~~~~L~~E~~~~~D--IL~ldf~Ds 214 (406)
+.+-|+|.+.-....-.+.|+ +...+.. ..+.++|+...++ +.....+++=.+.|.+ +..+.-.+
T Consensus 41 p~VSViiP~~nee~~l~~~L~-Sl~~q~Y--------p~~EIivvdd~s~---D~t~~iv~~~~~~~p~~~i~~v~~~~- 107 (373)
T TIGR03472 41 PPVSVLKPLHGDEPELYENLA-SFCRQDY--------PGFQMLFGVQDPD---DPALAVVRRLRADFPDADIDLVIDAR- 107 (373)
T ss_pred CCeEEEEECCCCChhHHHHHH-HHHhcCC--------CCeEEEEEeCCCC---CcHHHHHHHHHHhCCCCceEEEECCC-
Confidence 345555554433333334553 3444421 2366777665543 2222333332355665 32221111
Q ss_pred CCchhHHHHHHHHHHHhcCCccEEEEecCceeeeHHHHHHHHHhcCCCCce-EEEEeccCcccccCC--------Ccccc
Q 015471 215 YLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKPRV-YIGCMKSGPVLAQKG--------VRYHE 285 (406)
Q Consensus 215 Y~nLt~Ktl~~~~wa~~~~~a~fvlKvDDDvfVnv~~L~~~L~~~~~~~~l-y~G~~~~~pv~r~~~--------~Kwyv 285 (406)
-.....|.-...+ +.+..+.++++.+|+|+.+.++-|...+.... .+.+ .+++.....+..... .-++.
T Consensus 108 ~~G~~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~-~~~v~~V~~~~~~~~~~~~~~~l~~~~~~~~~~ 185 (373)
T TIGR03472 108 RHGPNRKVSNLIN-MLPHARHDILVIADSDISVGPDYLRQVVAPLA-DPDVGLVTCLYRGRPVPGFWSRLGAMGINHNFL 185 (373)
T ss_pred CCCCChHHHHHHH-HHHhccCCEEEEECCCCCcChhHHHHHHHHhc-CCCcceEeccccCCCCCCHHHHHHHHHhhhhhh
Confidence 1122346555443 44556899999999999999999988887763 2222 222221110000000 00111
Q ss_pred CcccccCCCCCccCCCcCCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhcCCC
Q 015471 286 PEYWKFGEEGNKYFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFIGLDA 343 (406)
Q Consensus 286 p~~~~fg~~~~~YP~Y~~G~gYvlS~dla~~I~~~s~~l~~~~~EDV~lG~~l~gl~v 343 (406)
|.... ... ..-+.++.|+.+++.+++.+.+---... ...-.||+.+|.-+...|.
T Consensus 186 ~~~~~-~~~-~~~~~~~~G~~~a~RR~~l~~iGGf~~~-~~~~~ED~~l~~~i~~~G~ 240 (373)
T TIGR03472 186 PSVMV-ARA-LGRARFCFGATMALRRATLEAIGGLAAL-AHHLADDYWLGELVRALGL 240 (373)
T ss_pred HHHHH-HHh-ccCCccccChhhheeHHHHHHcCChHHh-cccchHHHHHHHHHHHcCC
Confidence 21000 000 0113458899999999999888533221 2223599999988864443
No 16
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=93.18 E-value=5.6 Score=38.78 Aligned_cols=126 Identities=15% Similarity=0.166 Sum_probs=68.7
Q ss_pred HHHHHhcCCccEEEEecCceeeeHHHHHHHHHhcCCCCceEEE-Eecc--CcccccC--------------CCccccCcc
Q 015471 226 FATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIG-CMKS--GPVLAQK--------------GVRYHEPEY 288 (406)
Q Consensus 226 ~~wa~~~~~a~fvlKvDDDvfVnv~~L~~~L~~~~~~~~ly~G-~~~~--~pv~r~~--------------~~Kwyvp~~ 288 (406)
...+.+.-..+|++..|+|+.+.++-|..++......+...+| .+.. +.-.... ...|.....
T Consensus 75 ~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (299)
T cd02510 75 RIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPE 154 (299)
T ss_pred HHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCH
Confidence 4444444578999999999999988877777655433333332 2210 0000000 001111100
Q ss_pred cc--cCC-CCCccCCCcCCCceeecHHHHHHHHHhccccCCCCcchHHHH--HHHhcCCCeeeCCCCc
Q 015471 289 WK--FGE-EGNKYFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLG--SWFIGLDAEHIDDRRL 351 (406)
Q Consensus 289 ~~--fg~-~~~~YP~Y~~G~gYvlS~dla~~I~~~s~~l~~~~~EDV~lG--~~l~gl~v~~~d~~~f 351 (406)
.. ... +.....++++|++.++++++...+---...+..+..||+-+. .+..|..+..+++...
T Consensus 155 ~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p~a~v 222 (299)
T cd02510 155 EERRRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPCSRV 222 (299)
T ss_pred HHhhhcCCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcCCeEEEeeccEE
Confidence 00 000 012234567899999999999988654444555557998775 4446666555444433
No 17
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=93.13 E-value=3.1 Score=42.57 Aligned_cols=159 Identities=16% Similarity=0.077 Sum_probs=80.7
Q ss_pred eEEEEEeecCCCCCCchHHHHHHHHhhcC---CEEEeeccccCCchhHHHH---HHHHHHHh-cCCccEEEEecCceeee
Q 015471 176 IVMRFVIGHSATSGGILDRAIEAEDKKHG---DFLRLEHVEGYLELSAKTK---IFFATAVA-LWDADFYVKVDDDVHVN 248 (406)
Q Consensus 176 i~v~FvlG~s~~~~~~~~~~L~~E~~~~~---DIL~ldf~DsY~nLt~Ktl---~~~~wa~~-~~~a~fvlKvDDDvfVn 248 (406)
+.+++|-..|.+ + ....+++-.+++. .+..+...+.-.+-.-|.. .+++.+.+ .++.+|++.+|+|+.+.
T Consensus 71 ~eIIVVDd~StD--~-T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~ 147 (384)
T TIGR03469 71 LHVILVDDHSTD--G-TADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAHG 147 (384)
T ss_pred eEEEEEeCCCCC--c-HHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCCC
Confidence 567777666542 2 2222322223343 3444432221122234432 34555443 34589999999999999
Q ss_pred HHHHHHHHHhcCCCC-ceEEEEeccCcccccCCCcccc-----------CcccccCCCCCccCCCcCCCceeecHHHHHH
Q 015471 249 IATLGATLARHRSKP-RVYIGCMKSGPVLAQKGVRYHE-----------PEYWKFGEEGNKYFRHATGQLYAISKDLASY 316 (406)
Q Consensus 249 v~~L~~~L~~~~~~~-~ly~G~~~~~pv~r~~~~Kwyv-----------p~~~~fg~~~~~YP~Y~~G~gYvlS~dla~~ 316 (406)
++.|.+.+......+ .+..|...... .....+... |-.|. .+ ......++.|++.++++++.+.
T Consensus 148 p~~l~~lv~~~~~~~~~~vs~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~G~~~lirr~~~~~ 223 (384)
T TIGR03469 148 PDNLARLVARARAEGLDLVSLMVRLRC--ESFWEKLLIPAFVFFFQKLYPFRWV-ND-PRRRTAAAAGGCILIRREALER 223 (384)
T ss_pred hhHHHHHHHHHHhCCCCEEEecccccC--CCHHHHHHHHHHHHHHHHhcchhhh-cC-CCccceeecceEEEEEHHHHHH
Confidence 998888887653322 33222221100 000000000 11111 00 1122344689999999999988
Q ss_pred HHHhccccCCCCcchHHHHHHHhcCC
Q 015471 317 ISINQHVLHKFANEDVSLGSWFIGLD 342 (406)
Q Consensus 317 I~~~s~~l~~~~~EDV~lG~~l~gl~ 342 (406)
+---..... ...||+.++.-+...|
T Consensus 224 vGGf~~~~~-~~~ED~~L~~r~~~~G 248 (384)
T TIGR03469 224 IGGIAAIRG-ALIDDCTLAAAVKRSG 248 (384)
T ss_pred cCCHHHHhh-CcccHHHHHHHHHHcC
Confidence 833222212 2479999998886443
No 18
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=92.83 E-value=7.2 Score=35.86 Aligned_cols=167 Identities=12% Similarity=-0.010 Sum_probs=83.6
Q ss_pred CCeEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeeccccCCchhHHHHHHHHHHHhcCCccEEEEecCceeeeHHHHH
Q 015471 174 KGIVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHVEGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLG 253 (406)
Q Consensus 174 ~~i~v~FvlG~s~~~~~~~~~~L~~E~~~~~DIL~ldf~DsY~nLt~Ktl~~~~wa~~~~~a~fvlKvDDDvfVnv~~L~ 253 (406)
..+.++.+-+.+. +.....++...+++..+....-. +.. +. .++..+.+..+.+|++.+|||..+.++.|.
T Consensus 30 ~~~evivvd~~s~---d~~~~~~~~~~~~~~~v~~i~~~----~~~-~~-~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~ 100 (249)
T cd02525 30 DLIEIIVVDGGST---DGTREIVQEYAAKDPRIRLIDNP----KRI-QS-AGLNIGIRNSRGDIIIRVDAHAVYPKDYIL 100 (249)
T ss_pred CccEEEEEeCCCC---ccHHHHHHHHHhcCCeEEEEeCC----CCC-ch-HHHHHHHHHhCCCEEEEECCCccCCHHHHH
Confidence 3456666655543 23344444444444334333322 111 11 346666655589999999999999988888
Q ss_pred HHHHhcCCCC-ceEEEEecc---Ccccc----cCCCccccCcccccCCCCCccCCCcCCCceeecHHHHHHHHHhccccC
Q 015471 254 ATLARHRSKP-RVYIGCMKS---GPVLA----QKGVRYHEPEYWKFGEEGNKYFRHATGQLYAISKDLASYISINQHVLH 325 (406)
Q Consensus 254 ~~L~~~~~~~-~ly~G~~~~---~pv~r----~~~~Kwyvp~~~~fg~~~~~YP~Y~~G~gYvlS~dla~~I~~~s~~l~ 325 (406)
..+......+ .+..|.... .+... .....+.....+. ......+-.++.|++.++++++.+.+..-...
T Consensus 101 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-- 177 (249)
T cd02525 101 ELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAY-RGGAVKIGYVDTVHHGAYRREVFEKVGGFDES-- 177 (249)
T ss_pred HHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhccCCccc-cccccccccccccccceEEHHHHHHhCCCCcc--
Confidence 8886543322 334444321 11100 0000000000000 00001101145778889999998887432222
Q ss_pred CCCcchHHHHHHHh--cCCCeeeCCCCcc
Q 015471 326 KFANEDVSLGSWFI--GLDAEHIDDRRLC 352 (406)
Q Consensus 326 ~~~~EDV~lG~~l~--gl~v~~~d~~~f~ 352 (406)
....||..++.-+. |..+...++...+
T Consensus 178 ~~~~eD~~l~~r~~~~G~~~~~~~~~~~~ 206 (249)
T cd02525 178 LVRNEDAELNYRLRKAGYKIWLSPDIRVY 206 (249)
T ss_pred cCccchhHHHHHHHHcCcEEEEcCCeEEE
Confidence 23479999986664 4444455544333
No 19
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=92.34 E-value=3.6 Score=34.68 Aligned_cols=159 Identities=13% Similarity=0.091 Sum_probs=76.6
Q ss_pred EEEEEeCCCCCHHHH-HHHHHHhccCCcccccccccCCeEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeeccccCCc
Q 015471 139 MVVGINSAFSSRKRR-DSVRATWMPQGDKRKKLEEEKGIVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHVEGYLE 217 (406)
Q Consensus 139 llI~V~S~p~~~~rR-~aIR~TW~~~~~~l~~l~~~~~i~v~FvlG~s~~~~~~~~~~L~~E~~~~~DIL~ldf~DsY~n 217 (406)
++|.+.-.+....+- +++++. . ...+.++++-..+. +.....+.+-.+....+..+...+.. .
T Consensus 2 vvip~~n~~~~l~~~l~sl~~q--~----------~~~~eiivvdd~s~---d~~~~~~~~~~~~~~~i~~i~~~~n~-g 65 (169)
T PF00535_consen 2 VVIPTYNEAEYLERTLESLLKQ--T----------DPDFEIIVVDDGST---DETEEILEEYAESDPNIRYIRNPENL-G 65 (169)
T ss_dssp EEEEESS-TTTHHHHHHHHHHH--S----------GCEEEEEEEECS-S---SSHHHHHHHHHCCSTTEEEEEHCCCS-H
T ss_pred EEEEeeCCHHHHHHHHHHHhhc--c----------CCCEEEEEeccccc---cccccccccccccccccccccccccc-c
Confidence 344444445555543 667777 1 12345555555442 23444444443334556555555443 2
Q ss_pred hhHHHHHHHHHHHhcCCccEEEEecCceeeeHHHHHHHHHhcCC-CCceEEEEec--cCc--ccccCCC--ccccCcccc
Q 015471 218 LSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLGATLARHRS-KPRVYIGCMK--SGP--VLAQKGV--RYHEPEYWK 290 (406)
Q Consensus 218 Lt~Ktl~~~~wa~~~~~a~fvlKvDDDvfVnv~~L~~~L~~~~~-~~~ly~G~~~--~~p--v~r~~~~--Kwyvp~~~~ 290 (406)
+.. .+..+.+.-..+|++.+|||.++..+.|..++..... ...+.+|... ... ....... .+.......
T Consensus 66 ~~~----~~n~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (169)
T PF00535_consen 66 FSA----ARNRGIKHAKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKI 141 (169)
T ss_dssp HHH----HHHHHHHH--SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHH
T ss_pred ccc----cccccccccceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHH
Confidence 222 3333333345669999999999998877766665543 3445556543 111 1000000 011111000
Q ss_pred cCCCCCccCCCcCCCceeecHHHHHHH
Q 015471 291 FGEEGNKYFRHATGQLYAISKDLASYI 317 (406)
Q Consensus 291 fg~~~~~YP~Y~~G~gYvlS~dla~~I 317 (406)
.......-.+++.|++.++++++.+.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 142 FNNIRFWKISFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp HHTTHSTTSSEESSSCEEEEEHHHHHC
T ss_pred HHhhhcCCcccccccEEEEEHHHHHhh
Confidence 000112334557889999999988764
No 20
>PRK11204 N-glycosyltransferase; Provisional
Probab=91.73 E-value=13 Score=38.16 Aligned_cols=147 Identities=14% Similarity=0.182 Sum_probs=80.7
Q ss_pred hHHHHHHHHhhcCCEEEeeccccCCchhHHHHHHHHHHHhcCCccEEEEecCceeeeHHHHHHHHHhcCCCCceEEEEec
Q 015471 192 LDRAIEAEDKKHGDFLRLEHVEGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMK 271 (406)
Q Consensus 192 ~~~~L~~E~~~~~DIL~ldf~DsY~nLt~Ktl~~~~wa~~~~~a~fvlKvDDDvfVnv~~L~~~L~~~~~~~~ly~G~~~ 271 (406)
....+++..+++..+..++..+ |.. |. .+++.+.+..+.+|++..|+|..+.++.|.+.+......+++ |.+.
T Consensus 97 t~~~l~~~~~~~~~v~~i~~~~---n~G-ka-~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v--~~v~ 169 (420)
T PRK11204 97 TGEILDRLAAQIPRLRVIHLAE---NQG-KA-NALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRV--GAVT 169 (420)
T ss_pred HHHHHHHHHHhCCcEEEEEcCC---CCC-HH-HHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCe--EEEE
Confidence 4444555556666665555333 322 43 345666665689999999999999999888888766333332 3332
Q ss_pred cCcccccCCCccccC----cccc-cC-----CCCCccCCCcCCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHh--
Q 015471 272 SGPVLAQKGVRYHEP----EYWK-FG-----EEGNKYFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFI-- 339 (406)
Q Consensus 272 ~~pv~r~~~~Kwyvp----~~~~-fg-----~~~~~YP~Y~~G~gYvlS~dla~~I~~~s~~l~~~~~EDV~lG~~l~-- 339 (406)
+.+.+.+.. .+... ++.. ++ ......+...+|.+.++.++++..+---. +..-.||+.++.-+.
T Consensus 170 g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~vgg~~---~~~~~ED~~l~~rl~~~ 245 (420)
T PRK11204 170 GNPRIRNRS-TLLGRIQVGEFSSIIGLIKRAQRVYGRVFTVSGVITAFRKSALHEVGYWS---TDMITEDIDISWKLQLR 245 (420)
T ss_pred CCceeccch-hHHHHHHHHHHHHhhhHHHHHHHHhCCceEecceeeeeeHHHHHHhCCCC---CCcccchHHHHHHHHHc
Confidence 222222211 11000 0000 00 00001122357889999999988763222 223479999997774
Q ss_pred cCCCeeeCCC
Q 015471 340 GLDAEHIDDR 349 (406)
Q Consensus 340 gl~v~~~d~~ 349 (406)
|..+...++.
T Consensus 246 G~~i~~~p~~ 255 (420)
T PRK11204 246 GWDIRYEPRA 255 (420)
T ss_pred CCeEEecccc
Confidence 5555555554
No 21
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=91.65 E-value=0.63 Score=42.60 Aligned_cols=117 Identities=15% Similarity=0.044 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhcCCccEEEEecCceeeeHHHHHHHHHhcCC-CCceEEEEeccCcccccCCCcc------c---cCccc
Q 015471 220 AKTKIFFATAVALWDADFYVKVDDDVHVNIATLGATLARHRS-KPRVYIGCMKSGPVLAQKGVRY------H---EPEYW 289 (406)
Q Consensus 220 ~Ktl~~~~wa~~~~~a~fvlKvDDDvfVnv~~L~~~L~~~~~-~~~ly~G~~~~~pv~r~~~~Kw------y---vp~~~ 289 (406)
.|+-..........++++++..|+|+.|+++-|.+.+..... +-.+ +.++. ......+-| + .+.-+
T Consensus 17 ~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vgl-Vt~~~---~~~~~~~~~~~l~~~~~~~~~~~~ 92 (175)
T PF13506_consen 17 PKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGL-VTGLP---RGVPARGFWSRLEAAFFNFLPGVL 92 (175)
T ss_pred hHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcE-EEecc---cccCCcCHHHHHHHHHHhHHHHHH
Confidence 566555554433368999999999999999999998877643 2222 22221 111111111 1 11111
Q ss_pred ccCCCCCccCCCcCCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhcCCCee
Q 015471 290 KFGEEGNKYFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFIGLDAEH 345 (406)
Q Consensus 290 ~fg~~~~~YP~Y~~G~gYvlS~dla~~I~~~s~~l~~~~~EDV~lG~~l~gl~v~~ 345 (406)
.. -...+++.|+.+++.+++++.+--- ..+..+--||..+|..+...|.+.
T Consensus 93 ~a----~~~~~~~~G~~m~~rr~~L~~~GG~-~~l~~~ladD~~l~~~~~~~G~~v 143 (175)
T PF13506_consen 93 QA----LGGAPFAWGGSMAFRREALEEIGGF-EALADYLADDYALGRRLRARGYRV 143 (175)
T ss_pred HH----hcCCCceecceeeeEHHHHHHcccH-HHHhhhhhHHHHHHHHHHHCCCeE
Confidence 10 1245779999999999999877321 223335689999999997666554
No 22
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=91.43 E-value=11 Score=34.17 Aligned_cols=137 Identities=18% Similarity=0.109 Sum_probs=78.7
Q ss_pred eEEEEEeecCCCCCCchHHHHHHHHhhcC--CEEEeeccccCCchhHHHHHHHHHHHhcCCccEEEEecCceeeeHHHHH
Q 015471 176 IVMRFVIGHSATSGGILDRAIEAEDKKHG--DFLRLEHVEGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLG 253 (406)
Q Consensus 176 i~v~FvlG~s~~~~~~~~~~L~~E~~~~~--DIL~ldf~DsY~nLt~Ktl~~~~wa~~~~~a~fvlKvDDDvfVnv~~L~ 253 (406)
+.+++|...+.+ .....+++-...|. ++......... ....|.- .+..+.+....+|++..|+|+.+.++.|.
T Consensus 31 ~eiivVdd~s~d---~t~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~-~~n~g~~~a~~d~i~~~D~D~~~~~~~l~ 105 (196)
T cd02520 31 YEILFCVQDEDD---PAIPVVRKLIAKYPNVDARLLIGGEKV-GINPKVN-NLIKGYEEARYDILVISDSDISVPPDYLR 105 (196)
T ss_pred eEEEEEeCCCcc---hHHHHHHHHHHHCCCCcEEEEecCCcC-CCCHhHH-HHHHHHHhCCCCEEEEECCCceEChhHHH
Confidence 667777766642 22334444444554 33222221111 1123432 24445555678999999999999988888
Q ss_pred HHHHhcCCCCceEEEEeccCcccccCCCccccCcccccCCCCCccCCCcCCCceeecHHHHHHHHHhccccCCCCcchHH
Q 015471 254 ATLARHRSKPRVYIGCMKSGPVLAQKGVRYHEPEYWKFGEEGNKYFRHATGQLYAISKDLASYISINQHVLHKFANEDVS 333 (406)
Q Consensus 254 ~~L~~~~~~~~ly~G~~~~~pv~r~~~~Kwyvp~~~~fg~~~~~YP~Y~~G~gYvlS~dla~~I~~~s~~l~~~~~EDV~ 333 (406)
..+.... .+. +|.+.+ .++.|++.++.+++.+.+---.. ...+..||..
T Consensus 106 ~l~~~~~-~~~--~~~v~~---------------------------~~~~g~~~~~r~~~~~~~ggf~~-~~~~~~eD~~ 154 (196)
T cd02520 106 RMVAPLM-DPG--VGLVTC---------------------------LCAFGKSMALRREVLDAIGGFEA-FADYLAEDYF 154 (196)
T ss_pred HHHHHhh-CCC--CCeEEe---------------------------ecccCceeeeEHHHHHhccChHH-HhHHHHHHHH
Confidence 8776542 111 122110 04678999999999988743321 2223369999
Q ss_pred HHHHHhcCC--CeeeCC
Q 015471 334 LGSWFIGLD--AEHIDD 348 (406)
Q Consensus 334 lG~~l~gl~--v~~~d~ 348 (406)
++.-+...| +...++
T Consensus 155 l~~rl~~~G~~i~~~~~ 171 (196)
T cd02520 155 LGKLIWRLGYRVVLSPY 171 (196)
T ss_pred HHHHHHHcCCeEEEcch
Confidence 998885444 444444
No 23
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=90.90 E-value=9.5 Score=34.84 Aligned_cols=120 Identities=13% Similarity=0.013 Sum_probs=67.7
Q ss_pred HHHHHhcCCccEEEEecCceeeeHHHHHHHHHhcCCCCce--EEEEec--c-Ccc---cccC--CCccccCc-ccccCCC
Q 015471 226 FATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKPRV--YIGCMK--S-GPV---LAQK--GVRYHEPE-YWKFGEE 294 (406)
Q Consensus 226 ~~wa~~~~~a~fvlKvDDDvfVnv~~L~~~L~~~~~~~~l--y~G~~~--~-~pv---~r~~--~~Kwyvp~-~~~fg~~ 294 (406)
+..+.+..+.+|++.+|+|+++.++.|..++......+++ ..|... . ... .+.. ....+... .+. .
T Consensus 76 ~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 152 (234)
T cd06421 76 LNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPG---R 152 (234)
T ss_pred HHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHH---H
Confidence 3444444589999999999999999888888766443332 222211 1 000 0000 00000000 000 0
Q ss_pred CCccCCCcCCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhc--CCCeeeCCCCc
Q 015471 295 GNKYFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFIG--LDAEHIDDRRL 351 (406)
Q Consensus 295 ~~~YP~Y~~G~gYvlS~dla~~I~~~s~~l~~~~~EDV~lG~~l~g--l~v~~~d~~~f 351 (406)
......++.|++.++++++.+.+.--. ..+..||..++.-+.. ..+..+++...
T Consensus 153 ~~~~~~~~~g~~~~~r~~~~~~ig~~~---~~~~~eD~~l~~r~~~~g~~i~~~~~~~~ 208 (234)
T cd06421 153 DRWGAAFCCGSGAVVRREALDEIGGFP---TDSVTEDLATSLRLHAKGWRSVYVPEPLA 208 (234)
T ss_pred hhcCCceecCceeeEeHHHHHHhCCCC---ccceeccHHHHHHHHHcCceEEEecCccc
Confidence 011245578999999999998874322 2345799999987754 44555665544
No 24
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=90.65 E-value=9.7 Score=32.34 Aligned_cols=84 Identities=17% Similarity=0.187 Sum_probs=55.1
Q ss_pred CCccEEEEecCceeeeHHHHHHHHHhcCCCCce-EEEEeccCcccccCCCccccCcccccCCCCCccCCCcCCCceeecH
Q 015471 233 WDADFYVKVDDDVHVNIATLGATLARHRSKPRV-YIGCMKSGPVLAQKGVRYHEPEYWKFGEEGNKYFRHATGQLYAISK 311 (406)
Q Consensus 233 ~~a~fvlKvDDDvfVnv~~L~~~L~~~~~~~~l-y~G~~~~~pv~r~~~~Kwyvp~~~~fg~~~~~YP~Y~~G~gYvlS~ 311 (406)
-+.+|++..|||..+.++.|..++......+.. .++.. +.|++.++++
T Consensus 73 ~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~ 121 (166)
T cd04186 73 AKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK-------------------------------VSGAFLLVRR 121 (166)
T ss_pred CCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc-------------------------------CceeeEeeeH
Confidence 389999999999999999888888754322221 11111 6788999999
Q ss_pred HHHHHHHHhccccCCCCcchHHHHHHHh--cCCCeeeCC
Q 015471 312 DLASYISINQHVLHKFANEDVSLGSWFI--GLDAEHIDD 348 (406)
Q Consensus 312 dla~~I~~~s~~l~~~~~EDV~lG~~l~--gl~v~~~d~ 348 (406)
++++.+-.-...... ..||..+..-+. |..+...+.
T Consensus 122 ~~~~~~~~~~~~~~~-~~eD~~~~~~~~~~g~~i~~~~~ 159 (166)
T cd04186 122 EVFEEVGGFDEDFFL-YYEDVDLCLRARLAGYRVLYVPQ 159 (166)
T ss_pred HHHHHcCCCChhhhc-cccHHHHHHHHHHcCCeEEEccc
Confidence 988876432222222 568988876664 444544443
No 25
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=89.54 E-value=12 Score=34.97 Aligned_cols=122 Identities=16% Similarity=0.099 Sum_probs=63.1
Q ss_pred HHHHHHhcCCccEEEEecCceeeeHHHHHHHHHhcCC-CCceEEEEecc-CcccccCCCc--cccCcccccCCCCCccCC
Q 015471 225 FFATAVALWDADFYVKVDDDVHVNIATLGATLARHRS-KPRVYIGCMKS-GPVLAQKGVR--YHEPEYWKFGEEGNKYFR 300 (406)
Q Consensus 225 ~~~wa~~~~~a~fvlKvDDDvfVnv~~L~~~L~~~~~-~~~ly~G~~~~-~pv~r~~~~K--wyvp~~~~fg~~~~~YP~ 300 (406)
.+..+.+..+.+|++.+|+|+.+..+-|.+.+..... ...+..|.... .+........ |.....+..-......+.
T Consensus 100 a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (251)
T cd06439 100 ALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGGSGSGEGLYWKYENWLKRAESRLGSTV 179 (251)
T ss_pred HHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcccchhHHHHHHHHHHHHHHHHhcCCee
Confidence 3444445456799999999999998888888877642 22333343321 1100000001 100000000000011233
Q ss_pred CcCCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhcCC--CeeeCCCCcc
Q 015471 301 HATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFIGLD--AEHIDDRRLC 352 (406)
Q Consensus 301 Y~~G~gYvlS~dla~~I~~~s~~l~~~~~EDV~lG~~l~gl~--v~~~d~~~f~ 352 (406)
.+.|+++++.+++.. ..-...-.||..++.-+...| +...+....+
T Consensus 180 ~~~g~~~~~rr~~~~------~~~~~~~~eD~~l~~~~~~~G~~~~~~~~~~~~ 227 (251)
T cd06439 180 GANGAIYAIRRELFR------PLPADTINDDFVLPLRIARQGYRVVYEPDAVAY 227 (251)
T ss_pred eecchHHHhHHHHhc------CCCcccchhHHHHHHHHHHcCCeEEeccccEEE
Confidence 467888888887766 112223479999987775444 5455544443
No 26
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=89.18 E-value=3.9 Score=35.27 Aligned_cols=116 Identities=12% Similarity=0.064 Sum_probs=67.3
Q ss_pred EEeCCCCCHHHHHHHHHHhccCCcccccccccCCeEEEEEeecCCCCCCchHHHHHHHHhhcCCE-EEeeccccCCchhH
Q 015471 142 GINSAFSSRKRRDSVRATWMPQGDKRKKLEEEKGIVMRFVIGHSATSGGILDRAIEAEDKKHGDF-LRLEHVEGYLELSA 220 (406)
Q Consensus 142 ~V~S~p~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FvlG~s~~~~~~~~~~L~~E~~~~~DI-L~ldf~DsY~nLt~ 220 (406)
.|.+-+...+||+.+++.-... ++.+.|+-|..... .....+......+... ...+..-+--.-.+
T Consensus 3 ~vInL~~~~~Rr~~~~~~~~~~-----------~~~~~~~~Avd~~~--~~~~~~~~~~~~~~~~~~~~~l~~gEiGC~l 69 (128)
T cd06532 3 FVINLDRSTDRRERMEAQLAAL-----------GLDFEFFDAVDGKD--LSEEELAALYDALFLPRYGRPLTPGEIGCFL 69 (128)
T ss_pred EEEECCCCHHHHHHHHHHHHHc-----------CCCeEEEecccccc--CCHHHHHHHhHHHhhhhcCCCCChhhHHHHH
Confidence 4567788899999999855543 34567777765421 1111121111100000 00001111111223
Q ss_pred HHHHHHHHHHhcCCccEEEEecCceeeeHHHHHHHHHhcCCCCceEEEEeccCcccccCCCccccCcccccCCCCCccCC
Q 015471 221 KTKIFFATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKSGPVLAQKGVRYHEPEYWKFGEEGNKYFR 300 (406)
Q Consensus 221 Ktl~~~~wa~~~~~a~fvlKvDDDvfVnv~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~Kwyvp~~~~fg~~~~~YP~ 300 (406)
-.+..++.+.+ .+.++.+-..||+.+..+
T Consensus 70 SH~~~w~~~~~-~~~~~alIlEDDv~~~~~-------------------------------------------------- 98 (128)
T cd06532 70 SHYKLWQKIVE-SNLEYALILEDDAILDPD-------------------------------------------------- 98 (128)
T ss_pred HHHHHHHHHHH-cCCCeEEEEccCcEECCC--------------------------------------------------
Confidence 44455555554 367899999999988776
Q ss_pred CcCCCceeecHHHHHHHHHhccc
Q 015471 301 HATGQLYAISKDLASYISINQHV 323 (406)
Q Consensus 301 Y~~G~gYvlS~dla~~I~~~s~~ 323 (406)
+..+|++|+..|+++......
T Consensus 99 --~~~~Y~vs~~~A~~ll~~~~~ 119 (128)
T cd06532 99 --GTAGYLVSRKGAKKLLAALEP 119 (128)
T ss_pred --CceEEEeCHHHHHHHHHhCCC
Confidence 456899999999999987655
No 27
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=87.36 E-value=15 Score=30.73 Aligned_cols=95 Identities=12% Similarity=0.107 Sum_probs=51.0
Q ss_pred HHHHHHHhcCCccEEEEecCceeeeHHHHHHHHHhcCCCCc--eEEEEeccC----ccccc-CCCccccCcccc-cCCCC
Q 015471 224 IFFATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKPR--VYIGCMKSG----PVLAQ-KGVRYHEPEYWK-FGEEG 295 (406)
Q Consensus 224 ~~~~wa~~~~~a~fvlKvDDDvfVnv~~L~~~L~~~~~~~~--ly~G~~~~~----pv~r~-~~~Kwyvp~~~~-fg~~~ 295 (406)
..+.++.+..+.+|++.+|+|..+..+.|..++......+. +..|..... ..... ...++....... .+...
T Consensus 68 ~~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (180)
T cd06423 68 GALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSA 147 (180)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhhe
Confidence 34555555558999999999999998888877454433332 233333211 01100 000111110000 00001
Q ss_pred CccCCCcCCCceeecHHHHHHHH
Q 015471 296 NKYFRHATGQLYAISKDLASYIS 318 (406)
Q Consensus 296 ~~YP~Y~~G~gYvlS~dla~~I~ 318 (406)
..++..+.|.+++++++++..+-
T Consensus 148 ~~~~~~~~g~~~~~~~~~~~~~g 170 (180)
T cd06423 148 LGGVLVLSGAFGAFRREALREVG 170 (180)
T ss_pred ecceeecCchHHHHHHHHHHHhC
Confidence 23445678999999999988765
No 28
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=86.96 E-value=8.2 Score=34.07 Aligned_cols=135 Identities=10% Similarity=0.058 Sum_probs=73.7
Q ss_pred CeEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeeccccCCchhHHHHHHHHHHHhcCCccEEEEecCceeeeHHHHHH
Q 015471 175 GIVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHVEGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLGA 254 (406)
Q Consensus 175 ~i~v~FvlG~s~~~~~~~~~~L~~E~~~~~DIL~ldf~DsY~nLt~Ktl~~~~wa~~~~~a~fvlKvDDDvfVnv~~L~~ 254 (406)
.+.++.+-+.+.. .....++....++..+..++....+. |. .+++.+......+|++.+|+|....++.|..
T Consensus 29 ~~eiivvdd~s~d---~t~~~~~~~~~~~~~i~~i~~~~n~G----~~-~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~ 100 (181)
T cd04187 29 DYEIIFVDDGSTD---RTLEILRELAARDPRVKVIRLSRNFG----QQ-AALLAGLDHARGDAVITMDADLQDPPELIPE 100 (181)
T ss_pred CeEEEEEeCCCCc---cHHHHHHHHHhhCCCEEEEEecCCCC----cH-HHHHHHHHhcCCCEEEEEeCCCCCCHHHHHH
Confidence 4556666655542 22333444445565565555543321 22 3344444444679999999999999888888
Q ss_pred HHHhcCCCCceEEEEeccC--cccccCCCccccCcccccCCCCCccCCCcCCCceeecHHHHHHHHHh
Q 015471 255 TLARHRSKPRVYIGCMKSG--PVLAQKGVRYHEPEYWKFGEEGNKYFRHATGQLYAISKDLASYISIN 320 (406)
Q Consensus 255 ~L~~~~~~~~ly~G~~~~~--pv~r~~~~Kwyvp~~~~fg~~~~~YP~Y~~G~gYvlS~dla~~I~~~ 320 (406)
.+....+...+.+|..... +..+.-..+.+......+ .....+...|+.+++++++++.+..-
T Consensus 101 l~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~~~~~i~~~ 165 (181)
T cd04187 101 MLAKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKL---SGVDIPDNGGDFRLMDRKVVDALLLL 165 (181)
T ss_pred HHHHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHH---cCCCCCCCCCCEEEEcHHHHHHHHhc
Confidence 8876555556666664321 110000001110000000 11233456788899999999988753
No 29
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=84.89 E-value=3 Score=37.49 Aligned_cols=117 Identities=16% Similarity=0.137 Sum_probs=67.0
Q ss_pred EEEEecCceeeeHHHHHHHHHhcCCCCceEE--EEeccCcccccCCCccccCcc-cc-----cCCCCCccCCCcCCCcee
Q 015471 237 FYVKVDDDVHVNIATLGATLARHRSKPRVYI--GCMKSGPVLAQKGVRYHEPEY-WK-----FGEEGNKYFRHATGQLYA 308 (406)
Q Consensus 237 fvlKvDDDvfVnv~~L~~~L~~~~~~~~ly~--G~~~~~pv~r~~~~Kwyvp~~-~~-----fg~~~~~YP~Y~~G~gYv 308 (406)
||+-+|+|+.+..+-|...+.... .+.+-+ |..... .....-.++..-++ +. ........+.++.|++.+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~-~~~~~~vq~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 78 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALE-DPKVDAVQGPIIFR-NRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGML 78 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHh-CCCceEEEccEEec-CCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCccee
Confidence 688999999999998888877665 332222 222110 00000011111111 00 000112456678999999
Q ss_pred ecHHHHHHHHHhccccCCCCcchHHHHHHH--hcCCCeeeCCCCcccCCCC
Q 015471 309 ISKDLASYISINQHVLHKFANEDVSLGSWF--IGLDAEHIDDRRLCCGTPP 357 (406)
Q Consensus 309 lS~dla~~I~~~s~~l~~~~~EDV~lG~~l--~gl~v~~~d~~~f~~~~~p 357 (406)
+++++++.+.--. -.....||..++.=+ .|..+..+++....+..|+
T Consensus 79 ~r~~~l~~vg~~~--~~~~~~ED~~l~~~l~~~G~~~~~~~~~~~~~~~p~ 127 (193)
T PF13632_consen 79 FRREALREVGGFD--DPFSIGEDMDLGFRLRRAGYRIVYVPDAIVYTEAPP 127 (193)
T ss_pred eeHHHHHHhCccc--ccccccchHHHHHHHHHCCCEEEEecccceeeeCCC
Confidence 9999999875222 123456999998766 4666777777755554443
No 30
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=84.58 E-value=55 Score=34.14 Aligned_cols=162 Identities=13% Similarity=0.130 Sum_probs=86.2
Q ss_pred CeEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeeccccCCchhHHHHHHHHHHHhcCCccEEEEecCceeeeHHHHHH
Q 015471 175 GIVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHVEGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLGA 254 (406)
Q Consensus 175 ~i~v~FvlG~s~~~~~~~~~~L~~E~~~~~DIL~ldf~DsY~nLt~Ktl~~~~wa~~~~~a~fvlKvDDDvfVnv~~L~~ 254 (406)
.+.++++...+. +.....+++..+++..+....... |.. |. .+++.+....+.+|++..|+|..+..+.|..
T Consensus 104 ~~eIivVdDgs~---D~t~~~~~~~~~~~~~v~vv~~~~---n~G-ka-~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~ 175 (444)
T PRK14583 104 NIEVIAINDGSS---DDTAQVLDALLAEDPRLRVIHLAH---NQG-KA-IALRMGAAAARSEYLVCIDGDALLDKNAVPY 175 (444)
T ss_pred CeEEEEEECCCC---ccHHHHHHHHHHhCCCEEEEEeCC---CCC-HH-HHHHHHHHhCCCCEEEEECCCCCcCHHHHHH
Confidence 456555554443 223344544455666554443222 222 33 3456665656899999999999999999888
Q ss_pred HHHhcCCCCceEEEEeccCcccccCCC---ccccCcccc-cCC--C-CC--ccCCCcCCCceeecHHHHHHHHHhccccC
Q 015471 255 TLARHRSKPRVYIGCMKSGPVLAQKGV---RYHEPEYWK-FGE--E-GN--KYFRHATGQLYAISKDLASYISINQHVLH 325 (406)
Q Consensus 255 ~L~~~~~~~~ly~G~~~~~pv~r~~~~---Kwyvp~~~~-fg~--~-~~--~YP~Y~~G~gYvlS~dla~~I~~~s~~l~ 325 (406)
.+......++ +|.+.+.|..++... +....+... ++. + .. .-+..++|.+.++.+++++.+---.+.
T Consensus 176 lv~~~~~~~~--~g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~sG~~~~~rr~al~~vGg~~~~-- 251 (444)
T PRK14583 176 LVAPLIANPR--TGAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVYGQVFTVSGVVAAFRRRALADVGYWSPD-- 251 (444)
T ss_pred HHHHHHhCCC--eEEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCceEecCceeEEEHHHHHHcCCCCCC--
Confidence 8776533333 244433232222211 111111000 000 0 00 011235788899999998877432222
Q ss_pred CCCcchHHHHHHHh--cCCCeeeCCC
Q 015471 326 KFANEDVSLGSWFI--GLDAEHIDDR 349 (406)
Q Consensus 326 ~~~~EDV~lG~~l~--gl~v~~~d~~ 349 (406)
.-.||..+|.-+. |..+...++.
T Consensus 252 -~i~ED~dl~~rl~~~G~~i~~~p~a 276 (444)
T PRK14583 252 -MITEDIDISWKLQLKHWSVFFEPRG 276 (444)
T ss_pred -cccccHHHHHHHHHcCCeEEEeecc
Confidence 2369999998885 4445555543
No 31
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=82.74 E-value=35 Score=30.44 Aligned_cols=161 Identities=13% Similarity=0.041 Sum_probs=81.3
Q ss_pred CeEEEEEeecCCCCCCchHHHHHHHHhhcC-CEEEeeccccCCchhHHHHHHHHHHHhcCCccEEEEecCceeeeHHHHH
Q 015471 175 GIVMRFVIGHSATSGGILDRAIEAEDKKHG-DFLRLEHVEGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLG 253 (406)
Q Consensus 175 ~i~v~FvlG~s~~~~~~~~~~L~~E~~~~~-DIL~ldf~DsY~nLt~Ktl~~~~wa~~~~~a~fvlKvDDDvfVnv~~L~ 253 (406)
.+.++++-..+.+ .....+++-..++. .+.......+. ... ..+..+....+.+|++..|+|..+.++.|.
T Consensus 27 ~~eiiVvddgS~d---~t~~~~~~~~~~~~~~~~~~~~~~~~-G~~----~~~n~g~~~~~g~~v~~ld~Dd~~~~~~l~ 98 (214)
T cd04196 27 NDELIISDDGSTD---GTVEIIKEYIDKDPFIIILIRNGKNL-GVA----RNFESLLQAADGDYVFFCDQDDIWLPDKLE 98 (214)
T ss_pred CeEEEEEeCCCCC---CcHHHHHHHHhcCCceEEEEeCCCCc-cHH----HHHHHHHHhCCCCEEEEECCCcccChhHHH
Confidence 4566666654432 23333443344443 23333333222 222 223333444689999999999999988888
Q ss_pred HHHHh-cC-CCCceEEEEec----cCcccccCCC--ccccCcccccCCCCCccCCCcCCCceeecHHHHHHHHHhccccC
Q 015471 254 ATLAR-HR-SKPRVYIGCMK----SGPVLAQKGV--RYHEPEYWKFGEEGNKYFRHATGQLYAISKDLASYISINQHVLH 325 (406)
Q Consensus 254 ~~L~~-~~-~~~~ly~G~~~----~~pv~r~~~~--Kwyvp~~~~fg~~~~~YP~Y~~G~gYvlS~dla~~I~~~s~~l~ 325 (406)
.++.. .. +...++.|... .+.......- ..+.+.... .......++.|++.++.+++++.+..-....
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~- 174 (214)
T cd04196 99 RLLKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSF---NNLLFQNVVTGCTMAFNRELLELALPFPDAD- 174 (214)
T ss_pred HHHHHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccCH---HHHHHhCccCCceeeEEHHHHHhhccccccc-
Confidence 88876 22 33334444322 1111111000 000000000 0011234567899999999999876543332
Q ss_pred CCCcchHHHHHHHhcC-CCeeeCC
Q 015471 326 KFANEDVSLGSWFIGL-DAEHIDD 348 (406)
Q Consensus 326 ~~~~EDV~lG~~l~gl-~v~~~d~ 348 (406)
...||.++...+... .+..++.
T Consensus 175 -~~~~D~~~~~~~~~~~~~~~~~~ 197 (214)
T cd04196 175 -VIMHDWWLALLASAFGKVVFLDE 197 (214)
T ss_pred -cccchHHHHHHHHHcCceEEcch
Confidence 457888887666443 3334443
No 32
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=81.92 E-value=36 Score=31.13 Aligned_cols=148 Identities=14% Similarity=0.006 Sum_probs=72.3
Q ss_pred cCCEEEeeccccCCchhHHHHHHHHHHHhcCCccEEEEecCceeeeHHHHHHHH---HhcCCCCce-EEEEeccCccccc
Q 015471 203 HGDFLRLEHVEGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLGATL---ARHRSKPRV-YIGCMKSGPVLAQ 278 (406)
Q Consensus 203 ~~DIL~ldf~DsY~nLt~Ktl~~~~wa~~~~~a~fvlKvDDDvfVnv~~L~~~L---~~~~~~~~l-y~G~~~~~pv~r~ 278 (406)
...+..+....+.. ...=.-.+++.+.. .+++|++..|+|+.+.++.|..++ ......+.+ .+|..........
T Consensus 46 ~~~i~~i~~~~n~G-~~~a~N~g~~~a~~-~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (237)
T cd02526 46 SEKIELIHLGENLG-IAKALNIGIKAALE-NGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGE 123 (237)
T ss_pred CCcEEEEECCCcee-hHHhhhHHHHHHHh-CCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCe
Confidence 34454444333221 22223345555543 278999999999999999888885 323223332 2333211000000
Q ss_pred CCCccccCccc---ccCC-CCCccCCCcCCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHh--cCCCeeeCCCCcc
Q 015471 279 KGVRYHEPEYW---KFGE-EGNKYFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFI--GLDAEHIDDRRLC 352 (406)
Q Consensus 279 ~~~Kwyvp~~~---~fg~-~~~~YP~Y~~G~gYvlS~dla~~I~~~s~~l~~~~~EDV~lG~~l~--gl~v~~~d~~~f~ 352 (406)
....+..+..+ .... ....-..++.|++.++++++.+.+---.... .+..||+.++.-+. |..+...+.....
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ggfd~~~-~~~~eD~d~~~r~~~~G~~~~~~~~~~v~ 202 (237)
T cd02526 124 NSPGVRKSGYKLRIQKEGEEGLKEVDFLITSGSLISLEALEKVGGFDEDL-FIDYVDTEWCLRARSKGYKIYVVPDAVLK 202 (237)
T ss_pred eccceeccCccceecccccCCceEeeeeeccceEEcHHHHHHhCCCCHHH-cCccchHHHHHHHHHcCCcEEEEcCeEEE
Confidence 00000000000 0000 0011123456778899999988874332222 23468999987775 4445555555444
Q ss_pred c
Q 015471 353 C 353 (406)
Q Consensus 353 ~ 353 (406)
+
T Consensus 203 h 203 (237)
T cd02526 203 H 203 (237)
T ss_pred e
Confidence 3
No 33
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=81.56 E-value=38 Score=30.14 Aligned_cols=115 Identities=14% Similarity=0.066 Sum_probs=61.4
Q ss_pred HHHHHhcCCccEEEEecCceeeeHHHHHHHHHhcCC--CCceEEEEecc--CcccccCCCccccCcc----cccCCCCCc
Q 015471 226 FATAVALWDADFYVKVDDDVHVNIATLGATLARHRS--KPRVYIGCMKS--GPVLAQKGVRYHEPEY----WKFGEEGNK 297 (406)
Q Consensus 226 ~~wa~~~~~a~fvlKvDDDvfVnv~~L~~~L~~~~~--~~~ly~G~~~~--~pv~r~~~~Kwyvp~~----~~fg~~~~~ 297 (406)
+..+....+.+|++..|+|..+.++.|...+..... .-.++.|.+.. .... ....+. .|.. ..+.. ..
T Consensus 72 ~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~--~~ 147 (201)
T cd04195 72 LNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGN-DIGKRR-LPTSHDDILKFAR--RR 147 (201)
T ss_pred HHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCC-eecccc-CCCCHHHHHHHhc--cC
Confidence 445555458999999999999999888887776532 22344444321 1100 000010 1110 01100 01
Q ss_pred cCCCcCCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHh--cCCCeeeCCC
Q 015471 298 YFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFI--GLDAEHIDDR 349 (406)
Q Consensus 298 YP~Y~~G~gYvlS~dla~~I~~~s~~l~~~~~EDV~lG~~l~--gl~v~~~d~~ 349 (406)
- + ..|++.++.+.+...+-.-. .....||..+...+. |..+.++++.
T Consensus 148 ~-~-~~~~~~~~rr~~~~~~g~~~---~~~~~eD~~~~~r~~~~g~~~~~~~~~ 196 (201)
T cd04195 148 S-P-FNHPTVMFRKSKVLAVGGYQ---DLPLVEDYALWARMLANGARFANLPEI 196 (201)
T ss_pred C-C-CCChHHhhhHHHHHHcCCcC---CCCCchHHHHHHHHHHcCCceecccHH
Confidence 1 1 24566777777766543221 125689999987774 5555555443
No 34
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=80.04 E-value=17 Score=31.76 Aligned_cols=131 Identities=10% Similarity=0.005 Sum_probs=70.2
Q ss_pred eEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeeccccCCchhHHHHHHHHHHHhcCCccEEEEecCceeeeHHHHHHH
Q 015471 176 IVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHVEGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLGAT 255 (406)
Q Consensus 176 i~v~FvlG~s~~~~~~~~~~L~~E~~~~~DIL~ldf~DsY~nLt~Ktl~~~~wa~~~~~a~fvlKvDDDvfVnv~~L~~~ 255 (406)
..++.+-..+. +.....+.....++..+..+....... .-.++..+.+....+|++..|+|..+.++.|..+
T Consensus 29 ~eiivvd~~s~---d~~~~~~~~~~~~~~~~~~~~~~~n~G-----~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l 100 (185)
T cd04179 29 YEIIVVDDGST---DGTAEIARELAARVPRVRVIRLSRNFG-----KGAAVRAGFKAARGDIVVTMDADLQHPPEDIPKL 100 (185)
T ss_pred EEEEEEcCCCC---CChHHHHHHHHHhCCCeEEEEccCCCC-----ccHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHH
Confidence 34555544433 234444555555666655555544332 1133444445445699999999999999998888
Q ss_pred HHh-cCCCCceEEEEecc--C----cccccCCCccccCcc-cccCCCCCccCCCcCCCceeecHHHHHHHH
Q 015471 256 LAR-HRSKPRVYIGCMKS--G----PVLAQKGVRYHEPEY-WKFGEEGNKYFRHATGQLYAISKDLASYIS 318 (406)
Q Consensus 256 L~~-~~~~~~ly~G~~~~--~----pv~r~~~~Kwyvp~~-~~fg~~~~~YP~Y~~G~gYvlS~dla~~I~ 318 (406)
+.. ......+..|.... + +..+. ...+..... ..+ ...-.....|+.+++++++++.+.
T Consensus 101 ~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~~~~~i~ 167 (185)
T cd04179 101 LEKLLEGGADVVIGSRFVRGGGAGMPLLRR-LGSRLFNFLIRLL---LGVRISDTQSGFRLFRREVLEALL 167 (185)
T ss_pred HHHHhccCCcEEEEEeecCCCcccchHHHH-HHHHHHHHHHHHH---cCCCCcCCCCceeeeHHHHHHHHH
Confidence 886 44445666665321 1 11100 000000000 000 011223356788899999999986
No 35
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=79.23 E-value=12 Score=32.71 Aligned_cols=111 Identities=15% Similarity=0.011 Sum_probs=61.8
Q ss_pred HHHHHHhcCCccEEEEecCceeeeHHHHHHHHHhc--CCCCceEEEEec--cCcccccCCCccccCcccccCCCCCccCC
Q 015471 225 FFATAVALWDADFYVKVDDDVHVNIATLGATLARH--RSKPRVYIGCMK--SGPVLAQKGVRYHEPEYWKFGEEGNKYFR 300 (406)
Q Consensus 225 ~~~wa~~~~~a~fvlKvDDDvfVnv~~L~~~L~~~--~~~~~ly~G~~~--~~pv~r~~~~Kwyvp~~~~fg~~~~~YP~ 300 (406)
.+..+.+..+.+|++..|+|..+..+.+...+... .+...+..|... .+... ....+. ...... .......
T Consensus 66 a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~-~~~~~~-~~~~~~---~~~~~~~ 140 (202)
T cd06433 66 AMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGR-VIGRRR-PPPFLD---KFLLYGM 140 (202)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCC-cccCCC-Ccchhh---hHHhhcC
Confidence 34555555578999999999999999888887333 234455556542 11110 001110 011000 1122334
Q ss_pred CcCCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhcCC
Q 015471 301 HATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFIGLD 342 (406)
Q Consensus 301 Y~~G~gYvlS~dla~~I~~~s~~l~~~~~EDV~lG~~l~gl~ 342 (406)
+..|++.++++++.+.+-.-...+ ...||..+..-+...+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~f~~~~--~~~~D~~~~~r~~~~g 180 (202)
T cd06433 141 PICHQATFFRRSLFEKYGGFDESY--RIAADYDLLLRLLLAG 180 (202)
T ss_pred cccCcceEEEHHHHHHhCCCchhh--CchhhHHHHHHHHHcC
Confidence 567888899999998875322222 2357887765554333
No 36
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=79.04 E-value=11 Score=34.61 Aligned_cols=154 Identities=13% Similarity=0.103 Sum_probs=76.5
Q ss_pred eEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeeccccCCchhHHHHHHHHHHHhcCCccEEEEecCceeeeHHHHHHH
Q 015471 176 IVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHVEGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLGAT 255 (406)
Q Consensus 176 i~v~FvlG~s~~~~~~~~~~L~~E~~~~~DIL~ldf~DsY~nLt~Ktl~~~~wa~~~~~a~fvlKvDDDvfVnv~~L~~~ 255 (406)
..+++|...+. +.....+ .+...+..+.... .+. .-|.. .+..+....+.+|++.+|+|+.+.++.|...
T Consensus 29 ~eiivvdd~s~---d~~~~~l-~~~~~~~~~~v~~-~~~----~g~~~-a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l 98 (235)
T cd06434 29 LEIIVVTDGDD---EPYLSIL-SQTVKYGGIFVIT-VPH----PGKRR-ALAEGIRHVTTDIVVLLDSDTVWPPNALPEM 98 (235)
T ss_pred CEEEEEeCCCC---hHHHHHH-HhhccCCcEEEEe-cCC----CChHH-HHHHHHHHhCCCEEEEECCCceeChhHHHHH
Confidence 34566655443 2223333 3445566655553 221 12332 2334444458999999999999999999888
Q ss_pred HHhcCCCCceEEEEeccCcccccC-CCccccC---cccc---c---CCCCCccCCCcCCCceeecHHHHHHHHHhcc---
Q 015471 256 LARHRSKPRVYIGCMKSGPVLAQK-GVRYHEP---EYWK---F---GEEGNKYFRHATGQLYAISKDLASYISINQH--- 322 (406)
Q Consensus 256 L~~~~~~~~ly~G~~~~~pv~r~~-~~Kwyvp---~~~~---f---g~~~~~YP~Y~~G~gYvlS~dla~~I~~~s~--- 322 (406)
+.... .+.+ |.+......... ...|... ..+. . ......-...++|++.++.+++++.+.-...
T Consensus 99 ~~~~~-~~~v--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~~~~~~~~~ 175 (235)
T cd06434 99 LKPFE-DPKV--GGVGTNQRILRPRDSKWSFLAAEYLERRNEEIRAAMSYDGGVPCLSGRTAAYRTEILKDFLFLEEFTN 175 (235)
T ss_pred HHhcc-CCCE--eEEcCceEeecCcccHHHHHHHHHHHHHHHHHHHHHhhCCCEEEccCcHHHHHHHHHhhhhhHHHhhh
Confidence 87775 3332 222110000000 0111000 0000 0 0000001123568888888888876543211
Q ss_pred ----ccCCCCcchHHHHHHHhcCC
Q 015471 323 ----VLHKFANEDVSLGSWFIGLD 342 (406)
Q Consensus 323 ----~l~~~~~EDV~lG~~l~gl~ 342 (406)
..+....||..++.-+...|
T Consensus 176 ~~~~~~~~~~~eD~~l~~~~~~~g 199 (235)
T cd06434 176 ETFMGRRLNAGDDRFLTRYVLSHG 199 (235)
T ss_pred hhhcCCCCCcCchHHHHHHHHHCC
Confidence 12334679999987775444
No 37
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=78.26 E-value=55 Score=30.00 Aligned_cols=118 Identities=17% Similarity=0.141 Sum_probs=64.1
Q ss_pred HHHHHHhc--CCccEEEEecCceeeeHHHHHHHHHhcCCCCceEEEEeccCcccccCCCccccC----c--ccc-cCCC-
Q 015471 225 FFATAVAL--WDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKSGPVLAQKGVRYHEP----E--YWK-FGEE- 294 (406)
Q Consensus 225 ~~~wa~~~--~~a~fvlKvDDDvfVnv~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~Kwyvp----~--~~~-fg~~- 294 (406)
++.++.+. .+++|++..|+|+.+.++.|..++.... .+.+ |.+......++....++.. . .++ .+.+
T Consensus 73 a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (236)
T cd06435 73 ALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFD-DPRV--GFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVS 149 (236)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc-CCCe--eEEecCccccCCCccHHHHHHhHHHHHHHHHHhcc
Confidence 46666553 3589999999999999999998887764 2321 3221100111111111110 0 000 0000
Q ss_pred -CCccCCCcCCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHh--cCCCeeeCC
Q 015471 295 -GNKYFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFI--GLDAEHIDD 348 (406)
Q Consensus 295 -~~~YP~Y~~G~gYvlS~dla~~I~~~s~~l~~~~~EDV~lG~~l~--gl~v~~~d~ 348 (406)
...--.++.|++.++++++...+---.. .+..||+-++.=+. |..+...++
T Consensus 150 ~~~~~~~~~~g~~~~~rr~~~~~iGgf~~---~~~~eD~dl~~r~~~~G~~~~~~~~ 203 (236)
T cd06435 150 RNERNAIIQHGTMCLIRRSALDDVGGWDE---WCITEDSELGLRMHEAGYIGVYVAQ 203 (236)
T ss_pred ccccCceEEecceEEEEHHHHHHhCCCCC---ccccchHHHHHHHHHCCcEEEEcch
Confidence 0000124678889999999998743222 23489999987665 444444443
No 38
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=77.77 E-value=52 Score=29.39 Aligned_cols=101 Identities=15% Similarity=0.058 Sum_probs=60.2
Q ss_pred HHHHHHHHhcCCccEEEEecCceeeeHHHHHHHHHhcC-CCCceEEEEeccCcccccCCCccccCcccccCCCCCccCCC
Q 015471 223 KIFFATAVALWDADFYVKVDDDVHVNIATLGATLARHR-SKPRVYIGCMKSGPVLAQKGVRYHEPEYWKFGEEGNKYFRH 301 (406)
Q Consensus 223 l~~~~wa~~~~~a~fvlKvDDDvfVnv~~L~~~L~~~~-~~~~ly~G~~~~~pv~r~~~~Kwyvp~~~~fg~~~~~YP~Y 301 (406)
-.+++++. ..+.+|++..|||..+..+.|...+.... +.-.++.|.. +. ...
T Consensus 69 n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~------------------~~---~~~----- 121 (202)
T cd04185 69 YEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLV------------------LD---PDG----- 121 (202)
T ss_pred HHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEeccee------------------Ec---CCC-----
Confidence 34566665 45889999999999999888777776553 1212221111 00 000
Q ss_pred cCCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHh--cCCCeeeCCCCccc
Q 015471 302 ATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFI--GLDAEHIDDRRLCC 353 (406)
Q Consensus 302 ~~G~gYvlS~dla~~I~~~s~~l~~~~~EDV~lG~~l~--gl~v~~~d~~~f~~ 353 (406)
.+++.++.+++.+.+--..... ....||+.++.-+. |..+ ......+.+
T Consensus 122 -~~~~~~~~~~~~~~~g~~~~~~-~~~~eD~~~~~r~~~~G~~i-~~~~~~~~h 172 (202)
T cd04185 122 -SFVGVLISRRVVEKIGLPDKEF-FIWGDDTEYTLRASKAGPGI-YVPDAVVVH 172 (202)
T ss_pred -ceEEEEEeHHHHHHhCCCChhh-hccchHHHHHHHHHHcCCcE-EecceEEEE
Confidence 3456789999988774322222 23469999987774 5555 444444444
No 39
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=77.44 E-value=14 Score=32.38 Aligned_cols=96 Identities=14% Similarity=0.051 Sum_probs=57.8
Q ss_pred HHHHHhcCCccEEEEecCceeeeHHHHHHHHHhcCCCCceEEEEeccCcccccCCCccccCcccccCCCCCccCCCcCCC
Q 015471 226 FATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKSGPVLAQKGVRYHEPEYWKFGEEGNKYFRHATGQ 305 (406)
Q Consensus 226 ~~wa~~~~~a~fvlKvDDDvfVnv~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~Kwyvp~~~~fg~~~~~YP~Y~~G~ 305 (406)
+..+.+....+|++..|+|..+.++-|...+....+. ....|... +..+ . .-.....|+
T Consensus 71 ~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~~~-~~v~g~~~------------~~~~-------~-~~~~~~~~~ 129 (182)
T cd06420 71 RNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAEPG-VFLSGSRV------------LLNE-------K-LTERGIRGC 129 (182)
T ss_pred HHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhCCC-cEEeccee------------eccc-------c-cceeEeccc
Confidence 3444455578999999999999988888888766322 22223221 1110 0 000234677
Q ss_pred ceeecHHHHHHHHHhccccCCCCcchHHHHHHHhcCC
Q 015471 306 LYAISKDLASYISINQHVLHKFANEDVSLGSWFIGLD 342 (406)
Q Consensus 306 gYvlS~dla~~I~~~s~~l~~~~~EDV~lG~~l~gl~ 342 (406)
++++.+..+..+.--......+..||+.++.=+...|
T Consensus 130 ~~~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g 166 (182)
T cd06420 130 NMSFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSG 166 (182)
T ss_pred eEEEEHHHHHHhCCCCcccccCCcchHHHHHHHHHcC
Confidence 7888888877544333333334579999987775554
No 40
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=75.80 E-value=66 Score=32.66 Aligned_cols=194 Identities=13% Similarity=0.049 Sum_probs=106.6
Q ss_pred eeEEEEEeCCCCCH-HHHHHHHHHhccCCcccccccccCCeEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeeccccC
Q 015471 137 YLMVVGINSAFSSR-KRRDSVRATWMPQGDKRKKLEEEKGIVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHVEGY 215 (406)
Q Consensus 137 ~~llI~V~S~p~~~-~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FvlG~s~~~~~~~~~~L~~E~~~~~DIL~ldf~DsY 215 (406)
+.+-|.|.+--.+. --.+.++..=... -....+..+...+. +...+.+.+-..++++.+.....
T Consensus 54 p~vsviiP~ynE~~~~~~~~l~s~~~~d---------yp~~evivv~d~~~---d~~~~~~~~~~~~~~~~~~~~~~--- 118 (439)
T COG1215 54 PKVSVIIPAYNEEPEVLEETLESLLSQD---------YPRYEVIVVDDGST---DETYEILEELGAEYGPNFRVIYP--- 118 (439)
T ss_pred CceEEEEecCCCchhhHHHHHHHHHhCC---------CCCceEEEECCCCC---hhHHHHHHHHHhhcCcceEEEec---
Confidence 55566666644443 2334444333322 12245666665432 33445555556666544444422
Q ss_pred CchhHHHHHHHHHHHhcCCccEEEEecCceeeeHHHHHHHHHhcCCCCce-EEEEec--cCcccccCCCccccCcc----
Q 015471 216 LELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKPRV-YIGCMK--SGPVLAQKGVRYHEPEY---- 288 (406)
Q Consensus 216 ~nLt~Ktl~~~~wa~~~~~a~fvlKvDDDvfVnv~~L~~~L~~~~~~~~l-y~G~~~--~~pv~r~~~~Kwyvp~~---- 288 (406)
.+-...-...+.++...-+.++++..|.|+.+..+.|.+.+......+.. +.|... .++.....-.+-..-++
T Consensus 119 ~~~~~gK~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 198 (439)
T COG1215 119 EKKNGGKAGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAF 198 (439)
T ss_pred cccCccchHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhhH
Confidence 01112224566777665579999999999999999999999887544333 333221 00000000000000000
Q ss_pred ---cccCCCCCccCCCcCCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHh--cCCCeeeCCC
Q 015471 289 ---WKFGEEGNKYFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFI--GLDAEHIDDR 349 (406)
Q Consensus 289 ---~~fg~~~~~YP~Y~~G~gYvlS~dla~~I~~~s~~l~~~~~EDV~lG~~l~--gl~v~~~d~~ 349 (406)
+... .....+..++|.+.++-+++++.+-. .....--||..++..+. |..+..+++.
T Consensus 199 ~~~~~~~-~~~g~~~~~~G~~~~~rr~aL~~~g~---~~~~~i~ED~~lt~~l~~~G~~~~~~~~~ 260 (439)
T COG1215 199 YFRLRAA-SKGGLISFLSGSSSAFRRSALEEVGG---WLEDTITEDADLTLRLHLRGYRVVYVPEA 260 (439)
T ss_pred HHhhhhh-hhcCCeEEEcceeeeEEHHHHHHhCC---CCCCceeccHHHHHHHHHCCCeEEEeecc
Confidence 0000 12235777999999999999998872 22333469999999886 4555566654
No 41
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=74.66 E-value=67 Score=33.53 Aligned_cols=125 Identities=10% Similarity=0.117 Sum_probs=66.3
Q ss_pred HHHHHHhcCCccEEEEecCceeeeHHHHHHHHHhcCCCCce--EEEEeccCcc-cccCCCc--cccCc--------cccc
Q 015471 225 FFATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKPRV--YIGCMKSGPV-LAQKGVR--YHEPE--------YWKF 291 (406)
Q Consensus 225 ~~~wa~~~~~a~fvlKvDDDvfVnv~~L~~~L~~~~~~~~l--y~G~~~~~pv-~r~~~~K--wyvp~--------~~~f 291 (406)
+++++.+..+.+|++..|+|..+.++.|.+.+......+.+ ..|.+...+. ....... ++... .+..
T Consensus 122 AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~ 201 (439)
T TIGR03111 122 ALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAFLA 201 (439)
T ss_pred HHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHHHHHh
Confidence 45666666688999999999999999998888766433333 2243322111 0000000 01110 0000
Q ss_pred CC---CCCccCCCcCCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHh---cCCCeeeCCCCcc
Q 015471 292 GE---EGNKYFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFI---GLDAEHIDDRRLC 352 (406)
Q Consensus 292 g~---~~~~YP~Y~~G~gYvlS~dla~~I~~~s~~l~~~~~EDV~lG~~l~---gl~v~~~d~~~f~ 352 (406)
+. .....+..++|++.++.++++..+.--.. ..-.||..++.=+. +-.+...++..+.
T Consensus 202 ~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf~~---~~i~ED~~l~~rl~~~~g~kv~~~~~a~~~ 265 (439)
T TIGR03111 202 GRNFESQVNSLFTLSGAFSAFRRETILKTQLYNS---ETVGEDTDMTFQIRELLDGKVYLCENAIFY 265 (439)
T ss_pred hhHHHHhcCCeEEEccHHHhhhHHHHHHhCCCCC---CCcCccHHHHHHHHHhcCCeEEECCCCEEE
Confidence 00 00012223678888899998876532111 12389999986442 3344444554443
No 42
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=72.81 E-value=78 Score=29.09 Aligned_cols=120 Identities=15% Similarity=0.117 Sum_probs=61.2
Q ss_pred HHHHHHhcCCccEEEEecCceeeeHHHHHHHHHhcCCCCceEEEEeccCcccccCCCcccc-----Cccccc-----CCC
Q 015471 225 FFATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKSGPVLAQKGVRYHE-----PEYWKF-----GEE 294 (406)
Q Consensus 225 ~~~wa~~~~~a~fvlKvDDDvfVnv~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~Kwyv-----p~~~~f-----g~~ 294 (406)
.+..+.+..+.+|++.+|.|+.+.++.|...+... ..+. +|++.......++...|.. +....+ +..
T Consensus 78 a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~-~~~~--v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (232)
T cd06437 78 ALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYF-ADPK--LGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARS 154 (232)
T ss_pred HHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhh-cCCC--eEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHh
Confidence 34555555589999999999999999988855433 2232 2333211111111111110 000000 000
Q ss_pred CCccCCCcCCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHh--cCCCeeeCCCC
Q 015471 295 GNKYFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFI--GLDAEHIDDRR 350 (406)
Q Consensus 295 ~~~YP~Y~~G~gYvlS~dla~~I~~~s~~l~~~~~EDV~lG~~l~--gl~v~~~d~~~ 350 (406)
.......+.|++-++.+++...+---.. ....||+.++.-+. |..+..+++..
T Consensus 155 ~~~~~~~~~g~~~~~rr~~~~~vgg~~~---~~~~ED~~l~~rl~~~G~~~~~~~~~~ 209 (232)
T cd06437 155 STGLFFNFNGTAGVWRKECIEDAGGWNH---DTLTEDLDLSYRAQLKGWKFVYLDDVV 209 (232)
T ss_pred hcCCeEEeccchhhhhHHHHHHhCCCCC---CcchhhHHHHHHHHHCCCeEEEeccce
Confidence 0111112356666788888877632111 23479999987775 44444555443
No 43
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=72.77 E-value=5.1 Score=39.22 Aligned_cols=52 Identities=17% Similarity=0.110 Sum_probs=38.6
Q ss_pred cCCCceeecHHHHHHHHHhccc----cCCCCcchHHHHHHHhcCCCeeeCCCCccc
Q 015471 302 ATGQLYAISKDLASYISINQHV----LHKFANEDVSLGSWFIGLDAEHIDDRRLCC 353 (406)
Q Consensus 302 ~~G~gYvlS~dla~~I~~~s~~----l~~~~~EDV~lG~~l~gl~v~~~d~~~f~~ 353 (406)
-+|+|++||..||+.|...... .+.+.--|--+..|+..++|....++.|+.
T Consensus 11 fGGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~lgv~LT~e~g~hQ 66 (255)
T PF04646_consen 11 FGGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAELGVPLTKEPGFHQ 66 (255)
T ss_pred ccCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCceecCCcee
Confidence 3899999999999999986322 233334788999999878877655666654
No 44
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=69.25 E-value=1.2e+02 Score=30.44 Aligned_cols=134 Identities=7% Similarity=0.030 Sum_probs=70.3
Q ss_pred CeEEEEEeecCCCCCCchHHHHHHHHhhcCC-EEEeeccccCCchhHHHHHHHHHHHhcCCccEEEEecCceeeeHHHHH
Q 015471 175 GIVMRFVIGHSATSGGILDRAIEAEDKKHGD-FLRLEHVEGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLG 253 (406)
Q Consensus 175 ~i~v~FvlG~s~~~~~~~~~~L~~E~~~~~D-IL~ldf~DsY~nLt~Ktl~~~~wa~~~~~a~fvlKvDDDvfVnv~~L~ 253 (406)
.+.+++|-..|.+ + ....+++-.+.+++ ++......++. |.- ++....+..+.+|++-.|+|.-.+++.+.
T Consensus 38 ~~EIIvVDDgS~D--~-T~~il~~~~~~~~~~v~~i~~~~n~G----~~~-A~~~G~~~A~gd~vv~~DaD~q~~p~~i~ 109 (325)
T PRK10714 38 EYEILLIDDGSSD--N-SAEMLVEAAQAPDSHIVAILLNRNYG----QHS-AIMAGFSHVTGDLIITLDADLQNPPEEIP 109 (325)
T ss_pred CEEEEEEeCCCCC--c-HHHHHHHHHhhcCCcEEEEEeCCCCC----HHH-HHHHHHHhCCCCEEEEECCCCCCCHHHHH
Confidence 4678888766652 2 22333333334444 44444443332 111 23333333478999999999999999999
Q ss_pred HHHHhcCCCCceEEEEecc--CcccccCCCccccCcccccCCCCCccCCCcCCCceeecHHHHHHHHH
Q 015471 254 ATLARHRSKPRVYIGCMKS--GPVLAQKGVRYHEPEYWKFGEEGNKYFRHATGQLYAISKDLASYISI 319 (406)
Q Consensus 254 ~~L~~~~~~~~ly~G~~~~--~pv~r~~~~Kwyvp~~~~fg~~~~~YP~Y~~G~gYvlS~dla~~I~~ 319 (406)
.+++......++..|.... .+..+.-.++.+.---..+ .+..++.+.+| .-++++++++.+..
T Consensus 110 ~l~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~--~g~~~~d~~~g-fr~~~r~~~~~l~~ 174 (325)
T PRK10714 110 RLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRT--TGKAMGDYGCM-LRAYRRHIVDAMLH 174 (325)
T ss_pred HHHHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHHHH--cCCCCCCCCcC-eEEEcHHHHHHHHH
Confidence 8888764333454444321 2333322222211100001 12344443333 35899999999864
No 45
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=69.10 E-value=30 Score=34.00 Aligned_cols=137 Identities=13% Similarity=0.013 Sum_probs=74.3
Q ss_pred cCCEEEeeccccCCchhHHHHHHHHHHHhcCCccEEEEecCceeeeHHHHHHHHHhcCCCCce-EEEEecc---Ccc---
Q 015471 203 HGDFLRLEHVEGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKPRV-YIGCMKS---GPV--- 275 (406)
Q Consensus 203 ~~DIL~ldf~DsY~nLt~Ktl~~~~wa~~~~~a~fvlKvDDDvfVnv~~L~~~L~~~~~~~~l-y~G~~~~---~pv--- 275 (406)
+.++..+...++.-= ..=.-.+++.|.... .+|++-.++|+.+..+.|.++|+.....+.. ..|.... ++.
T Consensus 55 ~~~v~~i~~~~NlG~-agg~n~g~~~a~~~~-~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~ 132 (305)
T COG1216 55 FPNVRLIENGENLGF-AGGFNRGIKYALAKG-DDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYID 132 (305)
T ss_pred CCcEEEEEcCCCccc-hhhhhHHHHHHhcCC-CcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchh
Confidence 677766654443220 000114556665432 2299999999999999999999877544333 3333221 111
Q ss_pred cccC-----CCcc-ccCcccccCC--CCCccCCCcCCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhcCC
Q 015471 276 LAQK-----GVRY-HEPEYWKFGE--EGNKYFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFIGLD 342 (406)
Q Consensus 276 ~r~~-----~~Kw-yvp~~~~fg~--~~~~YP~Y~~G~gYvlS~dla~~I~~~s~~l~~~~~EDV~lG~~l~gl~ 342 (406)
.+.. ...| +.+......+ +.....++++|++.++++++.+.+---.. --.+..||+-++.=+...|
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~~de-~~F~y~eD~D~~~R~~~~G 206 (305)
T COG1216 133 RRGGESDGLTGGWRASPLLEIAPDLSSYLEVVASLSGACLLIRREAFEKVGGFDE-RFFIYYEDVDLCLRARKAG 206 (305)
T ss_pred eeccccccccccceecccccccccccchhhhhhhcceeeeEEcHHHHHHhCCCCc-ccceeehHHHHHHHHHHcC
Confidence 0110 0011 1111100000 01112225789999999999999977322 2234699999987665444
No 46
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=63.45 E-value=1.1e+02 Score=27.43 Aligned_cols=85 Identities=12% Similarity=0.010 Sum_probs=48.2
Q ss_pred CCccEEEEecCceeeeHHHHHHHHHh-cCCCCceEEEEec-cCcccccCCCcc--ccC-cccccCCC-CCccCCCcCCCc
Q 015471 233 WDADFYVKVDDDVHVNIATLGATLAR-HRSKPRVYIGCMK-SGPVLAQKGVRY--HEP-EYWKFGEE-GNKYFRHATGQL 306 (406)
Q Consensus 233 ~~a~fvlKvDDDvfVnv~~L~~~L~~-~~~~~~ly~G~~~-~~pv~r~~~~Kw--yvp-~~~~fg~~-~~~YP~Y~~G~g 306 (406)
-..+|++.+|+|..+.++.|..++.. ..+...+..|... ..... .....+ +.+ ....+... ...-.+.++|++
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGV-EGWGLKRKLISRGANLLARLLLGRKVSDPTSGF 155 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCcc-CCCcHHHHHHHHHHHHHHHHHcCCCCCCCCCcc
Confidence 35699999999999999988888886 3445566666532 11111 000000 000 00000000 011124478888
Q ss_pred eeecHHHHHHHH
Q 015471 307 YAISKDLASYIS 318 (406)
Q Consensus 307 YvlS~dla~~I~ 318 (406)
.++++++++.+.
T Consensus 156 ~~~~r~~~~~ig 167 (224)
T cd06442 156 RAYRREVLEKLI 167 (224)
T ss_pred chhhHHHHHHHh
Confidence 899999999987
No 47
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=59.49 E-value=65 Score=29.01 Aligned_cols=104 Identities=15% Similarity=0.062 Sum_probs=57.0
Q ss_pred HHHHhcCCccEEEEecCceeeeHHHHHHHHHhcCCCCceEEEEec----c-CcccccCCCccccCcccccCCCCCccCCC
Q 015471 227 ATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMK----S-GPVLAQKGVRYHEPEYWKFGEEGNKYFRH 301 (406)
Q Consensus 227 ~wa~~~~~a~fvlKvDDDvfVnv~~L~~~L~~~~~~~~ly~G~~~----~-~pv~r~~~~Kwyvp~~~~fg~~~~~YP~Y 301 (406)
..+......+|++.+|+|..+.++.|...+....... ..+|... . +...+....++.... .....+
T Consensus 65 n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~- 135 (221)
T cd02522 65 NAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRADG-AVAGAFRLRFDDPGPRLRLLELGANLRS-------RLFGLP- 135 (221)
T ss_pred HHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcCC-cEEEEEEeeecCCccchhhhhhccccee-------cccCCC-
Confidence 3344444689999999999999888888766554333 3444421 1 111000001111111 001111
Q ss_pred cCCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhcCC
Q 015471 302 ATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFIGLD 342 (406)
Q Consensus 302 ~~G~gYvlS~dla~~I~~~s~~l~~~~~EDV~lG~~l~gl~ 342 (406)
.++.+.++++++.+.+-.-.... ..||.-++.=+...|
T Consensus 136 ~~~~~~~~r~~~~~~~G~fd~~~---~~ED~d~~~r~~~~G 173 (221)
T cd02522 136 YGDQGLFIRRELFEELGGFPELP---LMEDVELVRRLRRRG 173 (221)
T ss_pred cCCceEEEEHHHHHHhCCCCccc---cccHHHHHHHHHhCC
Confidence 24567899999887775332222 689998876665444
No 48
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=58.60 E-value=42 Score=34.21 Aligned_cols=83 Identities=17% Similarity=0.301 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCCccEEEEecCceeeeHH---HHHHHHHhcCCCCceEEEEeccCcccccCCCccc---cCcccccCCCCC
Q 015471 223 KIFFATAVALWDADFYVKVDDDVHVNIA---TLGATLARHRSKPRVYIGCMKSGPVLAQKGVRYH---EPEYWKFGEEGN 296 (406)
Q Consensus 223 l~~~~wa~~~~~a~fvlKvDDDvfVnv~---~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~Kwy---vp~~~~fg~~~~ 296 (406)
..++.|+....++++++.+|||..+.++ -+.+.|..+...++++ |+.+.- +.+.+.. .|+..|+.
T Consensus 86 k~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~--~ISa~N---dnG~~~~~~~~~~~lyrs---- 156 (334)
T cd02514 86 KWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLW--CISAWN---DNGKEHFVDDTPSLLYRT---- 156 (334)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEE--EEEeec---cCCcccccCCCcceEEEe----
Confidence 3477777764589999999999999998 4455665555556654 332100 1111111 13333321
Q ss_pred ccCCCcCCCceeecHHHHHHH
Q 015471 297 KYFRHATGQLYAISKDLASYI 317 (406)
Q Consensus 297 ~YP~Y~~G~gYvlS~dla~~I 317 (406)
.|..|.|+++.+++-+.+
T Consensus 157 ---~ff~glGWml~r~~W~e~ 174 (334)
T cd02514 157 ---DFFPGLGWMLTRKLWKEL 174 (334)
T ss_pred ---cCCCchHHHHHHHHHHHh
Confidence 456899999999999887
No 49
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=57.16 E-value=1.4e+02 Score=26.37 Aligned_cols=109 Identities=13% Similarity=0.104 Sum_probs=58.5
Q ss_pred HHHHHHhcCCccEEEEecCceeeeHHHHHHHHHhcC--CCCceEEEEecc---CcccccCCCccccCcccccCCCCCccC
Q 015471 225 FFATAVALWDADFYVKVDDDVHVNIATLGATLARHR--SKPRVYIGCMKS---GPVLAQKGVRYHEPEYWKFGEEGNKYF 299 (406)
Q Consensus 225 ~~~wa~~~~~a~fvlKvDDDvfVnv~~L~~~L~~~~--~~~~ly~G~~~~---~pv~r~~~~Kwyvp~~~~fg~~~~~YP 299 (406)
++.++.+..+.+|++..|+|..+.++.|...++... ++..+..+.... ..... ..++.+. |.. ...+.
T Consensus 74 a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~-~~~---~~~~~ 146 (202)
T cd04184 74 ATNSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEGGKRS---EPFFKPD-WSP---DLLLS 146 (202)
T ss_pred HHHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccCCCCEe---ccccCCC-CCH---HHhhh
Confidence 345555555789999999999999998888887652 233333332210 00000 0111111 110 00111
Q ss_pred CCcCCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhcCC
Q 015471 300 RHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFIGLD 342 (406)
Q Consensus 300 ~Y~~G~gYvlS~dla~~I~~~s~~l~~~~~EDV~lG~~l~gl~ 342 (406)
.-+.|++-+++++++..+---... ....||.-++.-+...|
T Consensus 147 ~~~~~~~~~~~r~~~~~iggf~~~--~~~~eD~~l~~rl~~~g 187 (202)
T cd04184 147 QNYIGHLLVYRRSLVRQVGGFREG--FEGAQDYDLVLRVSEHT 187 (202)
T ss_pred cCCccceEeEEHHHHHHhCCCCcC--cccchhHHHHHHHHhcc
Confidence 113455567899888877532222 22469998887665444
No 50
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=56.68 E-value=1.9e+02 Score=27.95 Aligned_cols=164 Identities=12% Similarity=0.069 Sum_probs=88.3
Q ss_pred cCCeEEEEEeecCCCCCCchHHHHHHHHhhcCCE-EE-eeccccCCchhHHHHHHHHHHHhcCCccEEEEecCceeeeHH
Q 015471 173 EKGIVMRFVIGHSATSGGILDRAIEAEDKKHGDF-LR-LEHVEGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIA 250 (406)
Q Consensus 173 ~~~i~v~FvlG~s~~~~~~~~~~L~~E~~~~~DI-L~-ldf~DsY~nLt~Ktl~~~~wa~~~~~a~fvlKvDDDvfVnv~ 250 (406)
...+.++++=+.+. ......|.+-.+.++-+ ++ .+......+.+. +..-+.+....+|++..|.|+.+.++
T Consensus 32 ~~~~eiIvvd~~s~---~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~----arN~g~~~A~~d~l~flD~D~i~~~~ 104 (281)
T PF10111_consen 32 DPDFEIIVVDDGSS---DEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAK----ARNIGAKYARGDYLIFLDADCIPSPD 104 (281)
T ss_pred CCCEEEEEEECCCc---hhHHHHHHHHHhccCceEEEEcCCCCCCcCHHH----HHHHHHHHcCCCEEEEEcCCeeeCHH
Confidence 34667777766554 23345566666666655 22 222222223332 23334444589999999999999999
Q ss_pred HHHHHHH---hcCCCC-ceEEEE-ec-cCc----ccccCCCcccc--CcccccCCCCCccC-CCcCCCceeecHHHHHHH
Q 015471 251 TLGATLA---RHRSKP-RVYIGC-MK-SGP----VLAQKGVRYHE--PEYWKFGEEGNKYF-RHATGQLYAISKDLASYI 317 (406)
Q Consensus 251 ~L~~~L~---~~~~~~-~ly~G~-~~-~~p----v~r~~~~Kwyv--p~~~~fg~~~~~YP-~Y~~G~gYvlS~dla~~I 317 (406)
.|...+. .....+ .++++- .. ..+ ........|.. -+... ....+.+. ....|++.+++++.-..|
T Consensus 105 ~i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~i~r~~f~~i 183 (281)
T PF10111_consen 105 FIEKLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFI-SGKNSLWEFIAFASSCFLINREDFLEI 183 (281)
T ss_pred HHHHHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHh-hccccccccccccceEEEEEHHHHHHh
Confidence 9999888 433222 333322 21 111 00000000100 00000 00011111 223569999999998888
Q ss_pred HHhccccCCCCcchHHHHHHHhcCCCe
Q 015471 318 SINQHVLHKFANEDVSLGSWFIGLDAE 344 (406)
Q Consensus 318 ~~~s~~l~~~~~EDV~lG~~l~gl~v~ 344 (406)
----+....+..||.-++.=|...+..
T Consensus 184 GGfDE~f~G~G~ED~D~~~RL~~~~~~ 210 (281)
T PF10111_consen 184 GGFDERFRGWGYEDIDFGYRLKKAGYK 210 (281)
T ss_pred CCCCccccCCCcchHHHHHHHHHcCCc
Confidence 766666666789999998777655443
No 51
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=56.64 E-value=20 Score=33.94 Aligned_cols=113 Identities=14% Similarity=0.120 Sum_probs=61.1
Q ss_pred CCccEEEEecCceeeeHHHHHHHHHhcCCCCce--EEEEecc-Cc----ccccCCCccccCcc-cccCCCCCccCCCcCC
Q 015471 233 WDADFYVKVDDDVHVNIATLGATLARHRSKPRV--YIGCMKS-GP----VLAQKGVRYHEPEY-WKFGEEGNKYFRHATG 304 (406)
Q Consensus 233 ~~a~fvlKvDDDvfVnv~~L~~~L~~~~~~~~l--y~G~~~~-~p----v~r~~~~Kwyvp~~-~~fg~~~~~YP~Y~~G 304 (406)
.+.+|++.+|.|+.+..+.|...+......+.+ ..|.+.. ++ ..+-...-|..... .......-.+...+.|
T Consensus 72 a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~~~~~~~~s~~g~~~~~~G 151 (244)
T cd04190 72 DDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQGPLVMYQVFEYAISHWLDKAFESVFGFVTCLPG 151 (244)
T ss_pred CCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCcchhHHHhHheehhhhhhhcccHHHcCCceEECCC
Confidence 589999999999999999988888765333432 2233221 11 00000000000000 0000011235566889
Q ss_pred CceeecHHHHHHHHHhcc----------cc-------CCCCcchHHHHHHHh--cCCCee
Q 015471 305 QLYAISKDLASYISINQH----------VL-------HKFANEDVSLGSWFI--GLDAEH 345 (406)
Q Consensus 305 ~gYvlS~dla~~I~~~s~----------~l-------~~~~~EDV~lG~~l~--gl~v~~ 345 (406)
+++++.+++++.+..... .+ .....||..++..+. |..+..
T Consensus 152 ~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G~~~~~ 211 (244)
T cd04190 152 CFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGPKRKY 211 (244)
T ss_pred ceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccCCccEE
Confidence 999999998877532211 00 012469999987774 444544
No 52
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=56.63 E-value=44 Score=33.31 Aligned_cols=161 Identities=13% Similarity=0.128 Sum_probs=92.7
Q ss_pred ccCCeEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeecc--ccCCchhHHHHHHHHHHHhcCCccEEEEecCceeeeH
Q 015471 172 EEKGIVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHV--EGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNI 249 (406)
Q Consensus 172 ~~~~i~v~FvlG~s~~~~~~~~~~L~~E~~~~~DIL~ldf~--DsY~nLt~Ktl~~~~wa~~~~~a~fvlKvDDDvfVnv 249 (406)
...++.++|+-|.+ ..++.|..=.....-++-+|+. +.+..-+.--..+..|+++.++.++++..|-|+|...
T Consensus 35 s~~~~~vi~~~~~~-----~~d~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~ 109 (346)
T COG4092 35 SSDITMVICLRAHE-----VMDRLIRSYIDPMPRVLYLDFGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGSS 109 (346)
T ss_pred ccccEEEEEEecch-----hHHHHHHHHhccccceEEEecCCCccccchhhhhhccchhhhccccccEEEEEeccccccH
Confidence 34566777777654 4667777777777777888864 4555445555667888888779999999999999999
Q ss_pred HHHHHHHHhc-----CC---CCceE-EEEec--cCcccccCCC-ccc----cCcccccCCCCCccCCCcCCCceeecHHH
Q 015471 250 ATLGATLARH-----RS---KPRVY-IGCMK--SGPVLAQKGV-RYH----EPEYWKFGEEGNKYFRHATGQLYAISKDL 313 (406)
Q Consensus 250 ~~L~~~L~~~-----~~---~~~ly-~G~~~--~~pv~r~~~~-Kwy----vp~~~~fg~~~~~YP~Y~~G~gYvlS~dl 313 (406)
++..+.|.-. +. .+.+| +-.++ .+.+.-+-.+ +|- ++.--.++ .++.++.=..-+..++.++.
T Consensus 110 dnF~k~l~~~~ikk~~tnI~a~~vlPV~~LNk~~~~v~f~~~d~f~d~~i~es~~~~~~-~~~~ff~~~~T~~~liN~~~ 188 (346)
T COG4092 110 DNFAKMLSIATIKKMRTNIDAPLVLPVYHLNKADTQVFFDVEDMFLDAMIFESPLAEFR-KEDNFFIAPYTNIFLINRRM 188 (346)
T ss_pred HHHHHHHHHHHHHHHHhccCcceeeeeeecchhhhhHHHHHHHHhhhhHhhhhHHHHhC-cccccccccccceEEEehhH
Confidence 9999988321 11 11111 01111 1122111111 110 00000111 12233322344567888887
Q ss_pred HHHHHHhccccCCCCcchHHH-HHHH
Q 015471 314 ASYISINQHVLHKFANEDVSL-GSWF 338 (406)
Q Consensus 314 a~~I~~~s~~l~~~~~EDV~l-G~~l 338 (406)
-.+..-..+...-+.-||.-+ .+..
T Consensus 189 F~~tgGydE~F~GhG~EDfe~~~R~~ 214 (346)
T COG4092 189 FSLTGGYDERFRGHGSEDFEFLTRLG 214 (346)
T ss_pred HHHhcCCccccccCCchhHHHHHHHH
Confidence 776666666666677788643 4443
No 53
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=56.51 E-value=1.9e+02 Score=27.64 Aligned_cols=122 Identities=11% Similarity=0.026 Sum_probs=61.2
Q ss_pred HHHHHHhcCCccEEEEecCceeeeHHHHHHHHHhcCCCC-c-eEEEEec-c-C-----cccccCCCccccCcccccCCC-
Q 015471 225 FFATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKP-R-VYIGCMK-S-G-----PVLAQKGVRYHEPEYWKFGEE- 294 (406)
Q Consensus 225 ~~~wa~~~~~a~fvlKvDDDvfVnv~~L~~~L~~~~~~~-~-ly~G~~~-~-~-----pv~r~~~~Kwyvp~~~~fg~~- 294 (406)
++++|.+ .+++|++..|||+.+..+.|..+++.....+ . ..+|... . . +..+.. .+..+. ......
T Consensus 65 Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~ 140 (281)
T TIGR01556 65 GLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLD--GLLLRQ-ISLDGLT 140 (281)
T ss_pred HHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeec--ccceee-ecccccC
Confidence 5666654 3789999999999999888877776543221 2 2233211 1 0 000000 000010 000000
Q ss_pred CCccCCCcCCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHh--cCCCeeeCCCCc
Q 015471 295 GNKYFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFI--GLDAEHIDDRRL 351 (406)
Q Consensus 295 ~~~YP~Y~~G~gYvlS~dla~~I~~~s~~l~~~~~EDV~lG~~l~--gl~v~~~d~~~f 351 (406)
...-..++.++|.++++++++.+---...+ .+..||+-+..=+. |..+-.+++-.+
T Consensus 141 ~~~~~~~~~~sg~li~~~~~~~iG~fde~~-fi~~~D~e~~~R~~~~G~~i~~~~~~~~ 198 (281)
T TIGR01556 141 TPQKTSFLISSGCLITREVYQRLGMMDEEL-FIDHVDTEWSLRAQNYGIPLYIDPDIVL 198 (281)
T ss_pred CceeccEEEcCcceeeHHHHHHhCCccHhh-cccchHHHHHHHHHHCCCEEEEeCCEEE
Confidence 011113445566789999998885422222 23468887754443 444444444333
No 54
>PHA01631 hypothetical protein
Probab=55.12 E-value=30 Score=31.85 Aligned_cols=64 Identities=19% Similarity=0.305 Sum_probs=41.8
Q ss_pred CCccEEEEecCceeeeHHHHHHHHHhcCCCCceEEEEeccCcccccCCCccccCcccccCCCCCccCCCcCCCceeecHH
Q 015471 233 WDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKSGPVLAQKGVRYHEPEYWKFGEEGNKYFRHATGQLYAISKD 312 (406)
Q Consensus 233 ~~a~fvlKvDDDvfVnv~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~Kwyvp~~~~fg~~~~~YP~Y~~G~gYvlS~d 312 (406)
-+-+.++.+|.|++|+.-. .. .++..++.=|.. -+ .| |.+.+-+||.|.-|++.+.
T Consensus 70 i~DDi~~iIDSDV~ipn~~--~~----~~~~~v~t~CiP---A~----~k-----------p~~~v~~FC~sTNf~~pr~ 125 (176)
T PHA01631 70 IEDDIIAIIDSDLIIPNLR--EI----IPNERVFTPCYW---LY----YD-----------WANEIRPFCSGTNYIFRKS 125 (176)
T ss_pred CCccEEEEeccceEecCcc--cc----ccCCCccceeee---ee----ec-----------CCCcEEEEEccccEEeeHH
Confidence 5678888999999998542 11 233344443431 11 01 2235568999999999999
Q ss_pred HHHHHHHh
Q 015471 313 LASYISIN 320 (406)
Q Consensus 313 la~~I~~~ 320 (406)
.+..+...
T Consensus 126 ~l~~l~~v 133 (176)
T PHA01631 126 LLPYLEYT 133 (176)
T ss_pred HhHHHHHH
Confidence 99988764
No 55
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=54.63 E-value=3.1e+02 Score=30.76 Aligned_cols=132 Identities=14% Similarity=0.104 Sum_probs=72.5
Q ss_pred chhHHHHHHHHHHHhcCCccEEEEecCceeeeHHHHHHHHHhcCCCCce-EEEEec---c-CcccccCCCccccCcc---
Q 015471 217 ELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKPRV-YIGCMK---S-GPVLAQKGVRYHEPEY--- 288 (406)
Q Consensus 217 nLt~Ktl~~~~wa~~~~~a~fvlKvDDDvfVnv~~L~~~L~~~~~~~~l-y~G~~~---~-~pv~r~~~~Kwyvp~~--- 288 (406)
|...|.- .++.+.+..+.+|++..|.|+.+..+.|.+.+......+++ +++... + .|..++-......|.+
T Consensus 212 n~~~KAg-nLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~ 290 (713)
T TIGR03030 212 NVHAKAG-NINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFRRMPNENEL 290 (713)
T ss_pred CCCCChH-HHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHHHHhhhHHHH
Confidence 3344543 35666666788999999999999999888887665333333 122111 1 1111110000011110
Q ss_pred cc----cCCCCCccCCCcCCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhcC--CCeeeCCCCccc
Q 015471 289 WK----FGEEGNKYFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFIGL--DAEHIDDRRLCC 353 (406)
Q Consensus 289 ~~----fg~~~~~YP~Y~~G~gYvlS~dla~~I~~~s~~l~~~~~EDV~lG~~l~gl--~v~~~d~~~f~~ 353 (406)
.| .|. ...-.+++.|++.++.+++...+---.. ..-.||..++.-+... .+...++.....
T Consensus 291 f~~~i~~g~-~~~~~~~~~Gs~~~iRR~al~~iGGf~~---~~vtED~~l~~rL~~~G~~~~y~~~~~~~g 357 (713)
T TIGR03030 291 FYGLIQDGN-DFWNAAFFCGSAAVLRREALDEIGGIAG---ETVTEDAETALKLHRRGWNSAYLDRPLIAG 357 (713)
T ss_pred HHHHHHHHH-hhhCCeeecCceeEEEHHHHHHcCCCCC---CCcCcHHHHHHHHHHcCCeEEEeccccccc
Confidence 00 000 0001245678999999999987742211 1237999999888644 455666554443
No 56
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=49.75 E-value=2.5e+02 Score=27.11 Aligned_cols=132 Identities=15% Similarity=0.102 Sum_probs=72.2
Q ss_pred eeccccCCchhHHHHHHHHHHHhc-CCccEEEEecCceeeeHHHHHHHHHhcCCCCceEEEEeccCcccccCCC---cc-
Q 015471 209 LEHVEGYLELSAKTKIFFATAVAL-WDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKSGPVLAQKGV---RY- 283 (406)
Q Consensus 209 ldf~DsY~nLt~Ktl~~~~wa~~~-~~a~fvlKvDDDvfVnv~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~---Kw- 283 (406)
+-+...-.|.-.|+-..-...... .+.+|++-.|.|+.+.++.|...+......+. +|-+.......+..+ ++
T Consensus 69 v~~~~r~~~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~--vg~vq~~~~~~n~~~~~~~~~ 146 (254)
T cd04191 69 IYYRRRRENTGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPR--AGIIQTAPKLIGAETLFARLQ 146 (254)
T ss_pred EEEEEcCCCCCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCC--EEEEeCCceeECCCCHHHHHH
Confidence 333333334445555444443332 57899999999999999999998877643333 233321111111111 11
Q ss_pred ------ccC------cccccCCCCCccCCCcCCCceeecHHHHHHHHHhcc-----cc-CCCCcchHHHHHHHh--cCCC
Q 015471 284 ------HEP------EYWKFGEEGNKYFRHATGQLYAISKDLASYISINQH-----VL-HKFANEDVSLGSWFI--GLDA 343 (406)
Q Consensus 284 ------yvp------~~~~fg~~~~~YP~Y~~G~gYvlS~dla~~I~~~s~-----~l-~~~~~EDV~lG~~l~--gl~v 343 (406)
|.| ..|. ..-.++.|...++.++++..+..-.. -. ...-.||..+|..+. |..+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~------~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~ri 220 (254)
T cd04191 147 QFANRLYGPVFGRGLAAWQ------GGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWEV 220 (254)
T ss_pred HHHHHHHHHHHHHHHHHhc------CCccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCEE
Confidence 000 0011 11234679999999998877643211 11 223579999998885 4445
Q ss_pred eeeCC
Q 015471 344 EHIDD 348 (406)
Q Consensus 344 ~~~d~ 348 (406)
...+.
T Consensus 221 ~~~~~ 225 (254)
T cd04191 221 RLAPD 225 (254)
T ss_pred EEccC
Confidence 54443
No 57
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=48.99 E-value=2e+02 Score=25.84 Aligned_cols=88 Identities=14% Similarity=0.031 Sum_probs=52.0
Q ss_pred CeEEEEEeecCCCCCCchHHHHHHHHhhcCCE-EEeeccccCCchhHHHHHHHHHHHhcCCccEEEEecCceeeeHHHHH
Q 015471 175 GIVMRFVIGHSATSGGILDRAIEAEDKKHGDF-LRLEHVEGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLG 253 (406)
Q Consensus 175 ~i~v~FvlG~s~~~~~~~~~~L~~E~~~~~DI-L~ldf~DsY~nLt~Ktl~~~~wa~~~~~a~fvlKvDDDvfVnv~~L~ 253 (406)
.+.++.|-+.|.+ .....+++..++++.. ..+...... - +. .++..+.+....+|++.+|+|..+.++.|.
T Consensus 30 ~~eiivvdd~S~D---~t~~~~~~~~~~~~~~i~~i~~~~n~---G-~~-~a~~~g~~~a~gd~i~~ld~D~~~~~~~l~ 101 (211)
T cd04188 30 SYEIIVVDDGSKD---GTAEVARKLARKNPALIRVLTLPKNR---G-KG-GAVRAGMLAARGDYILFADADLATPFEELE 101 (211)
T ss_pred CEEEEEEeCCCCC---chHHHHHHHHHhCCCcEEEEEcccCC---C-cH-HHHHHHHHHhcCCEEEEEeCCCCCCHHHHH
Confidence 4567766665542 2344455555566654 223332221 1 11 233333343467999999999999999998
Q ss_pred HHHHh-cCCCCceEEEEe
Q 015471 254 ATLAR-HRSKPRVYIGCM 270 (406)
Q Consensus 254 ~~L~~-~~~~~~ly~G~~ 270 (406)
.++.. ......+.+|..
T Consensus 102 ~l~~~~~~~~~~~v~g~r 119 (211)
T cd04188 102 KLEEALKTSGYDIAIGSR 119 (211)
T ss_pred HHHHHHhccCCcEEEEEe
Confidence 88886 334456677764
No 58
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=48.04 E-value=20 Score=37.19 Aligned_cols=44 Identities=11% Similarity=0.133 Sum_probs=30.7
Q ss_pred CccEEEEecCceeeeHHHHHHHHHhcCCCCceEEEEeccCcccccC
Q 015471 234 DADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKSGPVLAQK 279 (406)
Q Consensus 234 ~a~fvlKvDDDvfVnv~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~ 279 (406)
.++|++..|||+++.++.+..+-......+ =+|-+..+|-..++
T Consensus 170 ~ydlvlisDsgI~m~pdtildm~t~M~she--kmalvtq~py~~dr 213 (431)
T KOG2547|consen 170 KYDLVLISDSGIFMKPDTILDMATTMMSHE--KMALVTQTPYCKDR 213 (431)
T ss_pred cCCEEEEecCCeeecCchHHHHHHhhhccc--ceeeecCCceeecc
Confidence 567999999999999999999887653211 24555555544444
No 59
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=46.96 E-value=1.5e+02 Score=23.76 Aligned_cols=80 Identities=14% Similarity=0.091 Sum_probs=48.0
Q ss_pred HHHHHhcCCccEEEEecCceeeeHHHHHHHHHhcCCCCce-EEEEeccCcccccCCCccccCcccccCCCCCccCCCcCC
Q 015471 226 FATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKPRV-YIGCMKSGPVLAQKGVRYHEPEYWKFGEEGNKYFRHATG 304 (406)
Q Consensus 226 ~~wa~~~~~a~fvlKvDDDvfVnv~~L~~~L~~~~~~~~l-y~G~~~~~pv~r~~~~Kwyvp~~~~fg~~~~~YP~Y~~G 304 (406)
+..+....+.+|++-+|+|..+.++.+...+......+.. .++. +
T Consensus 69 ~~~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~------------------------------~---- 114 (156)
T cd00761 69 RNAGLKAARGEYILFLDADDLLLPDWLERLVAELLADPEADAVGG------------------------------P---- 114 (156)
T ss_pred HHHHHHHhcCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEec------------------------------c----
Confidence 4444443489999999999999998888864433222211 1110 0
Q ss_pred CceeecHHHHHHHHHhccccCCCCcchHHHHHHHhc
Q 015471 305 QLYAISKDLASYISINQHVLHKFANEDVSLGSWFIG 340 (406)
Q Consensus 305 ~gYvlS~dla~~I~~~s~~l~~~~~EDV~lG~~l~g 340 (406)
++++++++..+.+......... ..||..++..+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~-~~ed~~~~~~~~~ 149 (156)
T cd00761 115 GNLLFRRELLEEIGGFDEALLS-GEEDDDFLLRLLR 149 (156)
T ss_pred chheeeHHHHHHhCCcchHhcC-CcchHHHHHHHHh
Confidence 6677888877776544333222 2677777665543
No 60
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=42.87 E-value=33 Score=21.34 Aligned_cols=19 Identities=37% Similarity=0.583 Sum_probs=15.5
Q ss_pred HHHhhhhHHHHHHHHHHHh
Q 015471 92 IQALDKTISNLEMELAAAR 110 (406)
Q Consensus 92 ~~~~~~~i~~le~el~~~~ 110 (406)
+..+..+|++||.+|+..+
T Consensus 3 ~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4567888999999998765
No 61
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=41.87 E-value=3e+02 Score=29.28 Aligned_cols=83 Identities=11% Similarity=0.210 Sum_probs=41.8
Q ss_pred HHHHHhcCCccEEEEecCceeeeHHHHHHHHHhc---CCCCceEEEEeccCcccccCCCcccc----CcccccCCCCCcc
Q 015471 226 FATAVALWDADFYVKVDDDVHVNIATLGATLARH---RSKPRVYIGCMKSGPVLAQKGVRYHE----PEYWKFGEEGNKY 298 (406)
Q Consensus 226 ~~wa~~~~~a~fvlKvDDDvfVnv~~L~~~L~~~---~~~~~ly~G~~~~~pv~r~~~~Kwyv----p~~~~fg~~~~~Y 298 (406)
+..+....+++.++-+.||.-|-++-+--+.... ...+.++ |+..- .+.+...++ |+..|..
T Consensus 183 L~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~--ciSaw---NdnG~~~~~~~~~~~~lyRs------ 251 (434)
T PF03071_consen 183 LSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLW--CISAW---NDNGKEHFVDDSRPSLLYRS------ 251 (434)
T ss_dssp HHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEE--EEES-----TT-BGGGS-TT-TT-EEEE------
T ss_pred HHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeE--EEEcc---ccCCccccccCCCccceEec------
Confidence 3333333578899999999999987665544433 2345666 43210 011111111 3333321
Q ss_pred CCCcCCCceeecHHHHHHHHHh
Q 015471 299 FRHATGQLYAISKDLASYISIN 320 (406)
Q Consensus 299 P~Y~~G~gYvlS~dla~~I~~~ 320 (406)
-|..|-|++|++++=..|...
T Consensus 252 -dffpglGWml~r~~w~el~~~ 272 (434)
T PF03071_consen 252 -DFFPGLGWMLTRELWDELEPK 272 (434)
T ss_dssp -SS---SSEEEEHHHHHHHGGG
T ss_pred -ccCCchHHHhhHHHHHhhccc
Confidence 134689999999999876543
No 62
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=37.64 E-value=3.4e+02 Score=25.21 Aligned_cols=158 Identities=13% Similarity=0.067 Sum_probs=79.6
Q ss_pred CeEEEEEeecCCCCCCchHHHHHHHHhhcCC--EEEeeccccCCchhHHHHHHHHHHHhcCCccEEEEecCceeeeHHHH
Q 015471 175 GIVMRFVIGHSATSGGILDRAIEAEDKKHGD--FLRLEHVEGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATL 252 (406)
Q Consensus 175 ~i~v~FvlG~s~~~~~~~~~~L~~E~~~~~D--IL~ldf~DsY~nLt~Ktl~~~~wa~~~~~a~fvlKvDDDvfVnv~~L 252 (406)
.+.+++|-..|.+ .....+.+-.++|++ +....... |.. | -.++..+...-+.+|++..|+|..++++.|
T Consensus 40 ~~eiivvDdgS~D---~t~~i~~~~~~~~~~~~v~~~~~~~---n~G-~-~~a~n~g~~~a~g~~i~~lD~D~~~~~~~l 111 (243)
T PLN02726 40 DFEIIVVDDGSPD---GTQDVVKQLQKVYGEDRILLRPRPG---KLG-L-GTAYIHGLKHASGDFVVIMDADLSHHPKYL 111 (243)
T ss_pred CeEEEEEeCCCCC---CHHHHHHHHHHhcCCCcEEEEecCC---CCC-H-HHHHHHHHHHcCCCEEEEEcCCCCCCHHHH
Confidence 4567777665542 233334443445543 22222222 211 1 123444444457899999999999999988
Q ss_pred HHHHHhcC-CCCceEEEEecc-CcccccCCCcc---ccCc------ccccCCCCCccCCCcCCCceeecHHHHHHHHHhc
Q 015471 253 GATLARHR-SKPRVYIGCMKS-GPVLAQKGVRY---HEPE------YWKFGEEGNKYFRHATGQLYAISKDLASYISINQ 321 (406)
Q Consensus 253 ~~~L~~~~-~~~~ly~G~~~~-~pv~r~~~~Kw---yvp~------~~~fg~~~~~YP~Y~~G~gYvlS~dla~~I~~~s 321 (406)
..++.... ....+.+|.... +... .+..| ..+. .+.+ +. .-+...|++.++++++++.+....
T Consensus 112 ~~l~~~~~~~~~~~v~g~r~~~~~~~--~~~~~~r~~~~~~~~~~~~~~~---~~-~~~d~~g~~~~~rr~~~~~i~~~~ 185 (243)
T PLN02726 112 PSFIKKQRETGADIVTGTRYVKGGGV--HGWDLRRKLTSRGANVLAQTLL---WP-GVSDLTGSFRLYKRSALEDLVSSV 185 (243)
T ss_pred HHHHHHHHhcCCcEEEEccccCCCCc--CCccHHHHHHHHHHHHHHHHHh---CC-CCCcCCCcccceeHHHHHHHHhhc
Confidence 88887653 234566665321 1000 00001 1100 0111 11 112367888899999999997532
Q ss_pred cccCCCCcchHHHHHHH--hcCCCeeeCC
Q 015471 322 HVLHKFANEDVSLGSWF--IGLDAEHIDD 348 (406)
Q Consensus 322 ~~l~~~~~EDV~lG~~l--~gl~v~~~d~ 348 (406)
... .| ..|+-+..-+ .|..+..++.
T Consensus 186 ~~~-~~-~~~~el~~~~~~~g~~i~~vp~ 212 (243)
T PLN02726 186 VSK-GY-VFQMEIIVRASRKGYRIEEVPI 212 (243)
T ss_pred cCC-Cc-EEehHHHHHHHHcCCcEEEeCc
Confidence 221 22 2344444333 4555655543
No 63
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=33.70 E-value=3.9e+02 Score=24.69 Aligned_cols=121 Identities=14% Similarity=0.072 Sum_probs=66.3
Q ss_pred HHHHHHhcCCccEEEEecCceeeeHHHHHHHHHhcCCC-Cce-EEEE-eccCcccccCCCccccCcccc-cC-----CCC
Q 015471 225 FFATAVALWDADFYVKVDDDVHVNIATLGATLARHRSK-PRV-YIGC-MKSGPVLAQKGVRYHEPEYWK-FG-----EEG 295 (406)
Q Consensus 225 ~~~wa~~~~~a~fvlKvDDDvfVnv~~L~~~L~~~~~~-~~l-y~G~-~~~~pv~r~~~~Kwyvp~~~~-fg-----~~~ 295 (406)
++..+.+.-+.+|++..|+|+.+.++.|.+.+...... +.+ ++|. +...........+.+..+.+. ++ ...
T Consensus 75 a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (241)
T cd06427 75 ACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLAR 154 (241)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556555578999999999999999998888766432 332 2222 111000000000111000000 00 001
Q ss_pred CccCCCcCCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHh--cCCCeeeCC
Q 015471 296 NKYFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFI--GLDAEHIDD 348 (406)
Q Consensus 296 ~~YP~Y~~G~gYvlS~dla~~I~~~s~~l~~~~~EDV~lG~~l~--gl~v~~~d~ 348 (406)
...+..++|++.++++++.+.+---.. ....||..++.=+. |..+..++.
T Consensus 155 ~~~~~~~~g~~~~~rr~~~~~vgg~~~---~~~~eD~~l~~rl~~~G~r~~~~~~ 206 (241)
T cd06427 155 LGLPIPLGGTSNHFRTDVLRELGGWDP---FNVTEDADLGLRLARAGYRTGVLNS 206 (241)
T ss_pred cCCeeecCCchHHhhHHHHHHcCCCCc---ccchhhHHHHHHHHHCCceEEEecc
Confidence 123334688999999999988744222 23479999987664 444555544
No 64
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=32.31 E-value=4.7e+02 Score=29.47 Aligned_cols=202 Identities=13% Similarity=0.053 Sum_probs=100.7
Q ss_pred CCCeeEEEEEeCCCCCHHH-HHHHHHHhccCCcccccccccCCeEEEEEeecCCCCCCch--HHHHHHHHhhcCCEEEee
Q 015471 134 KRKYLMVVGINSAFSSRKR-RDSVRATWMPQGDKRKKLEEEKGIVMRFVIGHSATSGGIL--DRAIEAEDKKHGDFLRLE 210 (406)
Q Consensus 134 ~~~~~llI~V~S~p~~~~r-R~aIR~TW~~~~~~l~~l~~~~~i~v~FvlG~s~~~~~~~--~~~L~~E~~~~~DIL~ld 210 (406)
...+.+.|+|.+.-...++ +..|+.+..+-.. ......+.+ |++..+.+++... ...+.+=.++|++-..+=
T Consensus 121 ~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~----~~~~~~~e~-~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~ 195 (691)
T PRK05454 121 PPEARTAILMPIYNEDPARVFAGLRAMYESLAA----TGHGAHFDF-FILSDTRDPDIAAAEEAAWLELRAELGGEGRIF 195 (691)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHHHh----cCCCCCEEE-EEEECCCChhHHHHHHHHHHHHHHhcCCCCcEE
Confidence 3345666666665444432 4667777754211 001123444 8887655321101 011112233443211111
Q ss_pred ccccCCchhHHHHHHHHHHHh-cCCccEEEEecCceeeeHHHHHHHHHhcCCCCceEEEEeccCcccccCCCcc------
Q 015471 211 HVEGYLELSAKTKIFFATAVA-LWDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKSGPVLAQKGVRY------ 283 (406)
Q Consensus 211 f~DsY~nLt~Ktl~~~~wa~~-~~~a~fvlKvDDDvfVnv~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~Kw------ 283 (406)
+...-.|.-.|.-..-.+... ..+++|++-.|-|+.+..+.|.+.+......++ +|-+...+...+..+-+
T Consensus 196 yr~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~--vGlVQt~~~~~n~~slfaR~qqf 273 (691)
T PRK05454 196 YRRRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPR--AGLIQTLPVAVGADTLFARLQQF 273 (691)
T ss_pred EEECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcC--EEEEeCCccCcCCCCHHHHHHHH
Confidence 222233444566655555543 247899999999999999999998876533333 35543322222221101
Q ss_pred ----ccCc------ccccCCCCCccCCCcCCCceeecHHHHHHHHHh------ccccCCCCcchHHHHHHHh--cCCCee
Q 015471 284 ----HEPE------YWKFGEEGNKYFRHATGQLYAISKDLASYISIN------QHVLHKFANEDVSLGSWFI--GLDAEH 345 (406)
Q Consensus 284 ----yvp~------~~~fg~~~~~YP~Y~~G~gYvlS~dla~~I~~~------s~~l~~~~~EDV~lG~~l~--gl~v~~ 345 (406)
|-|- .|..+ . -...|...|+.++....+..- ...-..+--||...|..+. |-.|..
T Consensus 274 ~~~~y~~~~~~G~~~w~~~---~---g~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~GyrV~~ 347 (691)
T PRK05454 274 ATRVYGPLFAAGLAWWQGG---E---GNYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWGVWL 347 (691)
T ss_pred HHHHHHHHHHhhhhhhccC---c---cccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHCCCEEEE
Confidence 1000 01100 0 112466678888877655311 0111223478999999885 455666
Q ss_pred eCC
Q 015471 346 IDD 348 (406)
Q Consensus 346 ~d~ 348 (406)
+++
T Consensus 348 ~pd 350 (691)
T PRK05454 348 APD 350 (691)
T ss_pred cCc
Confidence 666
No 65
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=32.05 E-value=3.5e+02 Score=23.71 Aligned_cols=89 Identities=17% Similarity=0.091 Sum_probs=52.4
Q ss_pred HHHHHHHh-cCCccEEEEecCceeeeHHHHHHHHHhcCCCCceEEEEeccCcccccCCCccccC----cc----c--ccC
Q 015471 224 IFFATAVA-LWDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKSGPVLAQKGVRYHEP----EY----W--KFG 292 (406)
Q Consensus 224 ~~~~wa~~-~~~a~fvlKvDDDvfVnv~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~Kwyvp----~~----~--~fg 292 (406)
.+++++.. ..+.+|++.+|.|+.+.++.|..++........+..|+.... ++...|.-. .+ + ..+
T Consensus 70 ~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (183)
T cd06438 70 FGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYNSK----NPDDSWITRLYAFAFLVFNRLRPLG 145 (183)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEeee----CCccCHHHHHHHHHHHHHHHHHHHH
Confidence 34444432 246899999999999999988888877755556666664321 111122100 00 0 000
Q ss_pred CCCCccCCCcCCCceeecHHHHHH
Q 015471 293 EEGNKYFRHATGQLYAISKDLASY 316 (406)
Q Consensus 293 ~~~~~YP~Y~~G~gYvlS~dla~~ 316 (406)
...-.-+.++.|+++++++++++.
T Consensus 146 ~~~~~~~~~~~G~~~~~rr~~l~~ 169 (183)
T cd06438 146 RSNLGLSCQLGGTGMCFPWAVLRQ 169 (183)
T ss_pred HHHcCCCeeecCchhhhHHHHHHh
Confidence 000122335789999999999988
No 66
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=31.89 E-value=2.2e+02 Score=28.28 Aligned_cols=87 Identities=15% Similarity=0.049 Sum_probs=53.8
Q ss_pred cCCeEEEEEeecCCCCCCchHHHHHHHH----------hhcCCEEEe--eccccC-------Cc-----hhHHHHHHH-H
Q 015471 173 EKGIVMRFVIGHSATSGGILDRAIEAED----------KKHGDFLRL--EHVEGY-------LE-----LSAKTKIFF-A 227 (406)
Q Consensus 173 ~~~i~v~FvlG~s~~~~~~~~~~L~~E~----------~~~~DIL~l--df~DsY-------~n-----Lt~Ktl~~~-~ 227 (406)
...|.+-|+++.+.. ++.....|+++. ..|+-|.++ ||.+.- +. .-.+.++-- .
T Consensus 54 ~~lIsLgfLv~d~~e-~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN 132 (269)
T PF03452_consen 54 HELISLGFLVSDSSE-FDNTLKILEAALKKLQSHGPESKRFRSITILRKDFGQQLSQDRSERHAFEVQRPRRRAMARARN 132 (269)
T ss_pred chheEEEEEcCCCch-hHHHHHHHHHHHHHHhccCcccCCcceEEEEcCCCcccccCchhhccchhhHHHHHHHHHHHHH
Confidence 456889999999873 233444455433 345555443 554321 11 112222222 1
Q ss_pred HHHh---cCCccEEEEecCceeeeHHHHHHHHHhcC
Q 015471 228 TAVA---LWDADFYVKVDDDVHVNIATLGATLARHR 260 (406)
Q Consensus 228 wa~~---~~~a~fvlKvDDDvfVnv~~L~~~L~~~~ 260 (406)
|+.. .|..+|++-.|-|+.-.++.|++.|..++
T Consensus 133 ~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~~~ 168 (269)
T PF03452_consen 133 FLLSSALGPWHSWVLWLDADIVETPPTLIQDLIAHD 168 (269)
T ss_pred HHHHhhcCCcccEEEEEecCcccCChHHHHHHHhCC
Confidence 3332 37999999999999999999999998875
No 67
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=31.39 E-value=57 Score=30.20 Aligned_cols=43 Identities=21% Similarity=0.516 Sum_probs=0.0
Q ss_pred CccccCcccccCCCCCchh--HHHHHHHHHHHHhHhhhcccc-CCC
Q 015471 2 TWKSRGGIESASHKSFMSK--KWTLLLCIGCFCAGMLFSDRM-WTV 44 (406)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~ 44 (406)
|..|||.|+-.--.+.+.+ -|=++...++.-+|+|.--|| |+.
T Consensus 24 s~~S~~s~g~liv~gvv~rtvGWrvIa~~~~~Yg~lYlYERLtWT~ 69 (171)
T PF04799_consen 24 SVTSRGSMGVLIVGGVVWRTVGWRVIAVSGSLYGGLYLYERLTWTN 69 (171)
T ss_dssp ----------------------------------------------
T ss_pred HHhcCCchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 4457776643333333332 355777777778899999998 866
No 68
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=28.77 E-value=3.6e+02 Score=28.52 Aligned_cols=93 Identities=15% Similarity=0.156 Sum_probs=56.9
Q ss_pred HHHHHHhccCCcccccccccCCeEEEEEeecCCCC-----CC-chHHHHHH---HHhhcCCEEEeec---cccCCchhHH
Q 015471 154 DSVRATWMPQGDKRKKLEEEKGIVMRFVIGHSATS-----GG-ILDRAIEA---EDKKHGDFLRLEH---VEGYLELSAK 221 (406)
Q Consensus 154 ~aIR~TW~~~~~~l~~l~~~~~i~v~FvlG~s~~~-----~~-~~~~~L~~---E~~~~~DIL~ldf---~DsY~nLt~K 221 (406)
+.-|+.|............ ..-+++.|.|..+.+ ++ -+++.+++ =++.||=-+..+. .+.......|
T Consensus 106 d~~R~~wl~~~p~~~~~~~-g~prVviVT~sdp~~c~n~~gd~yLlks~kNK~dYAr~HGY~~fyn~~~ld~~~p~~WaK 184 (429)
T PLN03182 106 DEQRRRWLRKNPGFPSFVN-GKPRVLLVTGSQPKPCENPVGDHYLLKSLKNKIDYCRLHGIEIFYNMAHLDAEMAGFWAK 184 (429)
T ss_pred HHHHHHHHHhCCCCCCccC-CCCCEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHHHHhCCEEEeehhhcCcCCCcchhH
Confidence 4446667765432111111 234788888877642 12 22333332 3566775555553 2344566778
Q ss_pred HHHHHHHHHhcCCccEEEEecCceee
Q 015471 222 TKIFFATAVALWDADFYVKVDDDVHV 247 (406)
Q Consensus 222 tl~~~~wa~~~~~a~fvlKvDDDvfV 247 (406)
.-+..+.+.++|+++|+.=+|.|+++
T Consensus 185 lpaLR~aM~~~PeaEWiWWLDsDALI 210 (429)
T PLN03182 185 LPLLRKLMLAHPEVEWIWWMDSDALF 210 (429)
T ss_pred HHHHHHHHHHCCCceEEEEecCCcee
Confidence 88888888889999999999999987
No 69
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=26.18 E-value=3.3e+02 Score=21.44 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=30.0
Q ss_pred cCCEEEeeccccCCchhHHHHHHHHHHHh-cCCccEEEEecCceeeeHHH
Q 015471 203 HGDFLRLEHVEGYLELSAKTKIFFATAVA-LWDADFYVKVDDDVHVNIAT 251 (406)
Q Consensus 203 ~~DIL~ldf~DsY~nLt~Ktl~~~~wa~~-~~~a~fvlKvDDDvfVnv~~ 251 (406)
+.++-...+...|..-... ......+.+ ..+++|++.+|-|=|+.++.
T Consensus 40 ~~~v~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 40 LPGVGIIRWVDPYRDERRQ-RAWRNALIERAFDADWVLFLDADEFLVPPP 88 (97)
T ss_pred CCCcEEEEeCCCccchHHH-HHHHHHHHHhCCCCCEEEEEeeeEEEecCC
Confidence 4555555566666543333 333344433 35899999999999987654
No 70
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=25.16 E-value=3.8e+02 Score=26.91 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=18.5
Q ss_pred CCccEEEEecCceeeeHHHHHHHH
Q 015471 233 WDADFYVKVDDDVHVNIATLGATL 256 (406)
Q Consensus 233 ~~a~fvlKvDDDvfVnv~~L~~~L 256 (406)
..++||+-..|||.....-+....
T Consensus 168 ~~~~YyL~LEDDVia~~~f~~~i~ 191 (297)
T PF04666_consen 168 NLGDYYLQLEDDVIAAPGFLSRIK 191 (297)
T ss_pred hcCCeEEEecCCeEechhHHHHHH
Confidence 468899999999999876444443
No 71
>PRK10018 putative glycosyl transferase; Provisional
Probab=23.74 E-value=6.9e+02 Score=24.39 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=26.5
Q ss_pred HHHHHhcCCccEEEEecCceeeeHHHHHHHHHhc
Q 015471 226 FATAVALWDADFYVKVDDDVHVNIATLGATLARH 259 (406)
Q Consensus 226 ~~wa~~~~~a~fvlKvDDDvfVnv~~L~~~L~~~ 259 (406)
...+.+....+|++..|+|..+.++.|..++...
T Consensus 77 ~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~ 110 (279)
T PRK10018 77 RNQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHK 110 (279)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCccHHHHHHHHH
Confidence 3444444588999999999999999888777654
No 72
>PLN03181 glycosyltransferase; Provisional
Probab=23.18 E-value=4.5e+02 Score=27.97 Aligned_cols=92 Identities=22% Similarity=0.207 Sum_probs=54.6
Q ss_pred HHHHHHHhccCCcccccccccCCeEEEEEeecCCC----C-CC-chHHHHHH---HHhhcCCEEEee--ccc-cCCchhH
Q 015471 153 RDSVRATWMPQGDKRKKLEEEKGIVMRFVIGHSAT----S-GG-ILDRAIEA---EDKKHGDFLRLE--HVE-GYLELSA 220 (406)
Q Consensus 153 R~aIR~TW~~~~~~l~~l~~~~~i~v~FvlG~s~~----~-~~-~~~~~L~~---E~~~~~DIL~ld--f~D-sY~nLt~ 220 (406)
=++-|+.|.+... ....+..-+|+.|.|..+. + ++ -+.+.+++ =+++||=-+..+ ..+ .+..-..
T Consensus 108 wD~kR~~Wl~~~p---~~~~~~~prVViVT~Sdp~~C~~~~gD~~LlriikNR~dYArrHGY~lf~~~a~Ld~~~p~~Wa 184 (453)
T PLN03181 108 WDEKRAEWLKLHP---SFAPGAEERVVMVTGSQPTPCKNPIGDHLLLRFFKNKVDYCRIHGYDIFYNNALLHPKMNSYWA 184 (453)
T ss_pred HHHHHHHHHHhCC---CCCCCCCCCEEEEECCCCCCCCCcccHHHHHHHHHHHHHHHHHhCCcEEEeccccCccCchhhh
Confidence 3455667876532 1222344567777776622 1 22 22333332 256676433332 233 5556677
Q ss_pred HHHHHHHHHHhcCCccEEEEecCceee
Q 015471 221 KTKIFFATAVALWDADFYVKVDDDVHV 247 (406)
Q Consensus 221 Ktl~~~~wa~~~~~a~fvlKvDDDvfV 247 (406)
|...+-.-+.+.|+++|+.-+|.|+++
T Consensus 185 KipalRaAM~a~PeAEWfWWLDsDALI 211 (453)
T PLN03181 185 KLPVVRAAMLAHPEAEWIWWVDSDAVF 211 (453)
T ss_pred HHHHHHHHHHHCCCceEEEEecCCcee
Confidence 877777777779999999999999887
No 73
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=21.99 E-value=1e+03 Score=25.68 Aligned_cols=111 Identities=12% Similarity=-0.030 Sum_probs=59.3
Q ss_pred CccEEEEecCceeeeHHHHHHHHHhcCCCCceEEEEeccCcccccCCCcc----ccCcccc-cC--CC---CCccCCCcC
Q 015471 234 DADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKSGPVLAQKGVRY----HEPEYWK-FG--EE---GNKYFRHAT 303 (406)
Q Consensus 234 ~a~fvlKvDDDvfVnv~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~Kw----yvp~~~~-fg--~~---~~~YP~Y~~ 303 (406)
++++++-.|-|..+.++.|..+- ...++..+.-.-+...+ .+.+.| |.-+... +. .+ .-.-+-.++
T Consensus 158 ~~d~vvi~DAD~~v~Pd~Lr~~~-~~~~~~~~VQ~pv~~~~---~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~ 233 (504)
T PRK14716 158 RFAIIVLHDAEDVIHPLELRLYN-YLLPRHDFVQLPVFSLP---RDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSA 233 (504)
T ss_pred CcCEEEEEcCCCCcCccHHHHHH-hhcCCCCEEecceeccC---CchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccC
Confidence 46999999999999999987643 33333322110011110 111111 1100000 00 00 001122378
Q ss_pred CCceeecHHHHHHHHHhc---cccCCCCcchHHHHHHHh--cCCCeeeCC
Q 015471 304 GQLYAISKDLASYISINQ---HVLHKFANEDVSLGSWFI--GLDAEHIDD 348 (406)
Q Consensus 304 G~gYvlS~dla~~I~~~s---~~l~~~~~EDV~lG~~l~--gl~v~~~d~ 348 (406)
|.++++++++++.|.... ..-...--||.-+|.-+. |..+...+.
T Consensus 234 Gtg~afRR~aLe~l~~~~GG~~fd~~sLTED~dLglRL~~~G~rv~y~p~ 283 (504)
T PRK14716 234 GVGTAFSRRALERLAAERGGQPFDSDSLTEDYDIGLRLKRAGFRQIFVRV 283 (504)
T ss_pred CeeEEeEHHHHHHHHhhcCCCCCCCCCcchHHHHHHHHHHCCCEEEEecc
Confidence 999999999999986432 122334589999998885 444444443
No 74
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=21.76 E-value=82 Score=24.14 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhHhhhcc
Q 015471 23 TLLLCIGCFCAGMLFSD 39 (406)
Q Consensus 23 ~~~~~~~~~~~~~~~~~ 39 (406)
++++|++|+.+|.+++-
T Consensus 42 ~~~~c~~S~~lG~~~~~ 58 (60)
T PF06072_consen 42 VVALCVLSGGLGALVAW 58 (60)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 35889999999988753
No 75
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=21.75 E-value=5.9e+02 Score=22.86 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=31.0
Q ss_pred HHHHHhcCCccEEEEecCceeeeHHHHHHHHHhcCCCCceEEEE
Q 015471 226 FATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGC 269 (406)
Q Consensus 226 ~~wa~~~~~a~fvlKvDDDvfVnv~~L~~~L~~~~~~~~ly~G~ 269 (406)
+..+.+.-+.+|++.+|+|..+.++.|...+......+...+|+
T Consensus 76 ~N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~ 119 (219)
T cd06913 76 KNQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGC 119 (219)
T ss_pred HHHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEE
Confidence 34444555789999999999999988877665553334445565
Done!