Your job contains 1 sequence.
>015472
MCNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLW
LDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSL
LCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDG
LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIY
KRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESKSLP
ESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEENE
GRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKASHL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 015472
(406 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2135892 - symbol:EMB140 "EMBRYO DEFECTIVE 140"... 1148 1.6e-116 1
UNIPROTKB|E1BWJ0 - symbol:SART3 "Uncharacterized protein"... 436 1.9e-40 1
ZFIN|ZDB-GENE-040724-10 - symbol:sart3 "squamous cell car... 400 3.2e-38 2
UNIPROTKB|F1RGA7 - symbol:SART3 "Uncharacterized protein"... 412 1.9e-37 1
UNIPROTKB|E2QXZ2 - symbol:SART3 "Uncharacterized protein"... 413 2.0e-37 1
RGD|1311646 - symbol:Sart3 "squamous cell carcinoma antig... 408 5.2e-37 1
UNIPROTKB|F1N0I9 - symbol:SART3 "Uncharacterized protein"... 402 6.1e-37 1
MGI|MGI:1858230 - symbol:Sart3 "squamous cell carcinoma a... 406 8.6e-37 1
UNIPROTKB|F8VV04 - symbol:SART3 "Squamous cell carcinoma ... 399 2.7e-36 1
UNIPROTKB|Q15020 - symbol:SART3 "Squamous cell carcinoma ... 399 4.9e-36 1
UNIPROTKB|F1NUL7 - symbol:SART3 "Uncharacterized protein"... 368 8.0e-33 1
UNIPROTKB|F1NF69 - symbol:SART3 "Uncharacterized protein"... 309 1.4e-26 1
WB|WBGene00007111 - symbol:B0035.12 species:6239 "Caenorh... 247 4.2e-18 1
UNIPROTKB|B7ZKM0 - symbol:SART3 "Squamous cell carcinoma ... 206 5.9e-17 2
DICTYBASE|DDB_G0291836 - symbol:DDB_G0291836 "Squamous ce... 162 1.9e-15 2
POMBASE|SPBC1861.04c - symbol:SPBC1861.04c "RNA-binding p... 162 2.9e-09 2
TAIR|locus:2152965 - symbol:AT5G41770 species:3702 "Arabi... 107 2.7e-07 2
TAIR|locus:2080853 - symbol:AT3G51110 species:3702 "Arabi... 102 5.9e-07 2
TAIR|locus:2161363 - symbol:AT5G45990 species:3702 "Arabi... 102 1.1e-06 2
UNIPROTKB|F1MZT2 - symbol:CRNKL1 "Uncharacterized protein... 95 8.8e-06 2
UNIPROTKB|F1P3Q8 - symbol:CRNKL1 "Uncharacterized protein... 92 1.5e-05 2
WB|WBGene00019762 - symbol:M03F8.3 species:6239 "Caenorha... 94 1.6e-05 2
MGI|MGI:1914127 - symbol:Crnkl1 "Crn, crooked neck-like 1... 90 2.3e-05 2
RGD|620507 - symbol:Crnkl1 "crooked neck pre-mRNA splicin... 90 2.3e-05 2
ASPGD|ASPL0000053069 - symbol:AN1259 species:162425 "Emer... 132 2.4e-05 1
UNIPROTKB|F1PYE9 - symbol:CRNKL1 "Uncharacterized protein... 91 2.5e-05 2
ASPGD|ASPL0000073559 - symbol:AN10574 species:162425 "Eme... 135 2.5e-05 1
UNIPROTKB|I3LL94 - symbol:I3LL94 "Uncharacterized protein... 120 4.2e-05 1
ZFIN|ZDB-GENE-040426-694 - symbol:crnkl1 "crooked neck pr... 90 9.1e-05 2
FB|FBgn0000377 - symbol:crn "crooked neck" species:7227 "... 92 9.5e-05 2
UNIPROTKB|Q5JY65 - symbol:CRNKL1 "Crooked neck-like prote... 96 0.00011 2
UNIPROTKB|Q9BZJ0 - symbol:CRNKL1 "Crooked neck-like prote... 96 0.00011 2
POMBASE|SPBC31F10.11c - symbol:cwf4 "complexed with Cdc5 ... 82 0.00036 3
MGI|MGI:3525069 - symbol:AY512931 "cDNA sequence AY512931... 95 0.00050 1
UNIPROTKB|E1C8G8 - symbol:PRPF39 "Uncharacterized protein... 102 0.00051 2
UNIPROTKB|J9P5Z1 - symbol:CRNKL1 "Uncharacterized protein... 92 0.00085 2
>TAIR|locus:2135892 [details] [associations]
symbol:EMB140 "EMBRYO DEFECTIVE 140" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=NAS] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] InterPro:IPR000504
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 SMART:SM00386 EMBL:CP002687
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 InterPro:IPR008669 Pfam:PF05391
OMA:SQAVMKM IPI:IPI00526863 RefSeq:NP_194158.3 UniGene:At.32361
ProteinModelPortal:F4JQ75 SMR:F4JQ75 PRIDE:F4JQ75
EnsemblPlants:AT4G24270.2 GeneID:828529 KEGG:ath:AT4G24270
PhylomeDB:F4JQ75 Uniprot:F4JQ75
Length = 817
Score = 1148 (409.2 bits), Expect = 1.6e-116, P = 1.6e-116
Identities = 228/403 (56%), Positives = 289/403 (71%)
Query: 1 MCNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLW 60
M + RAHLEE IS+QDLSD+EKFQ++M Y+K+E++SGDP RVQ +YERA+ ++PVSSDLW
Sbjct: 272 MYSERAHLEENISKQDLSDTEKFQEFMNYIKFEKTSGDPTRVQAIYERAVAEYPVSSDLW 331
Query: 61 LDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVXXXXXXXXXXXXXXXISTVFEKSL 120
+DYT YLDKTLKVG + YSRAT++CPW G+LW I VFEKSL
Sbjct: 332 IDYTVYLDKTLKVGKAITHAYSRATRSCPWTGDLWARYLLALERGSASEKEIYDVFEKSL 391
Query: 121 LCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDG 180
C FS+FEEYLDL+LTR+DGLRRR+L + +E LDYSLIRETFQ+ASDYL+ M+NTD
Sbjct: 392 QCTFSSFEEYLDLYLTRVDGLRRRMLSTRMLEA-LDYSLIRETFQQASDYLTPHMQNTDS 450
Query: 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIY 240
LL L+ YWA+LE ++GKD+ ARGVW+ LK SG ML AW +YI ME+ L HI EARSIY
Sbjct: 451 LLHLHTYWANLELNIGKDLAGARGVWDSFLKKSGGMLAAWHAYIDMEVHLGHIKEARSIY 510
Query: 241 KRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESKSLP 300
+RCY+++F GTGSEDIC WLRFERE+G LE FD +VQKV PRLEEL+L R QQES +
Sbjct: 511 RRCYTRKFDGTGSEDICKGWLRFEREHGDLEHFDLAVQKVMPRLEELQLMRLQQESTPVK 570
Query: 301 ESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEENE 360
SA KEHS +KRK++ N+ E+S AKRQK QK +V D + A +N
Sbjct: 571 PSAGLKEHS-----SQKRKAEQNVE-EESLAKRQKRKSQK--EV-DLGGQSATVPATKNV 621
Query: 361 GRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKA 403
E +T + K+ +DA P + K + DECTAF+SN+++KA
Sbjct: 622 KAENGKTADSD--KEETEDAKPLKPKVYRDECTAFISNLSVKA 662
>UNIPROTKB|E1BWJ0 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 OMA:SQAVMKM
EMBL:AADN02034959 EMBL:AADN02034960 EMBL:AADN02034961
EMBL:AADN02034962 EMBL:AADN02034963 IPI:IPI00823214
ProteinModelPortal:E1BWJ0 Ensembl:ENSGALT00000038892
ArrayExpress:E1BWJ0 Uniprot:E1BWJ0
Length = 731
Score = 436 (158.5 bits), Expect = 1.9e-40, P = 1.9e-40
Identities = 113/389 (29%), Positives = 189/389 (48%)
Query: 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVV 77
+++ K +Y Y+ +E +GDP R+QL+YERA+ + + DLW Y QYLD+ LKV +V
Sbjct: 269 AETPKLAEYQAYIDFEMKAGDPARIQLIYERALAENCLVPDLWARYNQYLDRQLKVKELV 328
Query: 78 RDVYSRATKNCPWVGELWVXXXXXXXXXXXXXXXISTVFEKSLLCAFSTFEEYLDLFLTR 137
+ RA +NCPW LW+ IS +FEK+L F +Y++++
Sbjct: 329 LSAHDRAVRNCPWTVGLWIQYLLAMERHGVDHCIISDMFEKALNAGFIQATDYVEIWQAY 388
Query: 138 IDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMG- 196
+D LRRR+ F+ + L+ +R F RA +YL ++++ L +H + +G
Sbjct: 389 LDYLRRRVDFTQDSSKELEE--LRSAFARAVEYLKQEVEELQTCRYLGQQASHGDLEIGG 446
Query: 197 -KDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGS-- 253
++V A + LL L +Q+YI E++ + IY++ + T
Sbjct: 447 AAEVVGACSFY--LLGAETPKLAEYQAYIDFEMKAGDPARIQLIYEKALHRAVQCTSDYP 504
Query: 254 EDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESK--SLPESADQKEHSVK 311
E +C L ER GTLED+D +VQK RL + R++ K L E +K+ + K
Sbjct: 505 EHVCEVLLTLERIEGTLEDWDAAVQKTENRLARVNEQRAKLRRKPSKLSEGGGKKKQTEK 564
Query: 312 KTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEENEGRETKQTVEEQ 371
EK + + E++ ++Q A +K K K + + A++++ E Q EE
Sbjct: 565 NRAAEKEAALARQEEEKAEQRKQSRAEKKASKKAKKNRIGEKRKADDDDEGEWGQEEEED 624
Query: 372 PKKQPIKDAVPGRTKGFTDECTAFLSNIN 400
P +Q D+ D T F+SN++
Sbjct: 625 PLRQREHDS--------KDNITVFVSNLS 645
>ZFIN|ZDB-GENE-040724-10 [details] [associations]
symbol:sart3 "squamous cell carcinoma antigen
recognised by T cells 3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0000245 "spliceosomal
complex assembly" evidence=IMP] [GO:0031017 "exocrine pancreas
development" evidence=IMP] [GO:0030098 "lymphocyte differentiation"
evidence=IMP] [GO:0048538 "thymus development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
ZFIN:ZDB-GENE-040724-10 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 GO:GO:0048538 GO:GO:0000245
GO:GO:0031017 GO:GO:0030098 HOGENOM:HOG000063708 HOVERGEN:HBG053888
EMBL:BC159116 IPI:IPI00483754 UniGene:Dr.78990
ProteinModelPortal:B0JZB9 SMR:B0JZB9 STRING:B0JZB9
ArrayExpress:B0JZB9 Uniprot:B0JZB9
Length = 952
Score = 400 (145.9 bits), Expect = 3.2e-38, Sum P(2) = 3.2e-38
Identities = 107/355 (30%), Positives = 168/355 (47%)
Query: 17 LSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNV 76
+S+ K +Y Y+ +E GDP RVQ+++ RA+ + + DLW+ YT YLD+ LK+ ++
Sbjct: 285 VSEPPKLAEYQSYIDFEIKEGDPARVQIIFGRALAENCLVPDLWIKYTTYLDRQLKIKDL 344
Query: 77 VRDVYSRATKNCPWVGELWVXXXXXXXXXXXXXXXISTVFEKSLLCAFSTFEEYLDLFLT 136
V + RA +NCPW LW + VFEK+L F +Y++++ +
Sbjct: 345 VLSAHERAVRNCPWTMGLWKSYLLALERHGADHQTVKDVFEKALNAGFIQATDYVEIWQS 404
Query: 137 RIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMK---NTDGLLR--LYAYWAHL 191
+D LRRR+ FS E LD +R F R+ +YL + ++ + G L L WA +
Sbjct: 405 YLDYLRRRVDFSKEWSRELDE--LRAAFSRSLEYLKQDVEERFSESGDLSCTLMQIWARI 462
Query: 192 EQSMGKDMVSARGVWERLL-KISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTG 250
E K+M AR +W+ ++ K + W Y ++E R R + T
Sbjct: 463 EALHCKNMQKARELWDSIMTKGNAKYANMWLEYYNLERSYGDAAHCRKALHRAV--QCTS 520
Query: 251 TGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESKSLPESADQKEHSV 310
E +C L FER G+LED+D +VQK +L + R++ K E+ ++
Sbjct: 521 DYPEHVCDVLLNFERVEGSLEDWDAAVQKTETKLNRVCEQRARVAEK---EALHARQEEE 577
Query: 311 KKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEENEGRETK 365
K R K K+D K QK QK + DK K + + EE G E +
Sbjct: 578 KAEQRRKVKADK---------KAQKKG-QKANRTGDKRKAEDDD--EEEWGEEAE 620
Score = 46 (21.3 bits), Expect = 3.2e-38, Sum P(2) = 3.2e-38
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 332 KRQKHAPQKPKKVHD--KEKRQVQN 354
K Q+ AP+ ++ HD KE+R+ +N
Sbjct: 665 KNQQGAPEPQRQPHDMPKEQRKDEN 689
>UNIPROTKB|F1RGA7 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043231 "intracellular membrane-bounded organelle"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 InterPro:IPR008669
Pfam:PF05391 CTD:9733 OMA:SQAVMKM EMBL:CU424486
RefSeq:XP_001926720.3 UniGene:Ssc.37664 Ensembl:ENSSSCT00000010898
GeneID:100152586 KEGG:ssc:100152586 Uniprot:F1RGA7
Length = 959
Score = 412 (150.1 bits), Expect = 1.9e-37, P = 1.9e-37
Identities = 106/355 (29%), Positives = 176/355 (49%)
Query: 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVV 77
+++ + +Y Y+ +E GDP R+QL++ERA+ + + DLW+ Y+QYLD+ LKV ++V
Sbjct: 306 AEAPRLAEYQAYIDFEMKIGDPARIQLIFERALVENCLVPDLWIRYSQYLDRQLKVKDLV 365
Query: 78 RDVYSRATKNCPWVGELWVXXXXXXXXXXXXXXXISTVFEKSLLCAFSTFEEYLDLFLTR 137
V+SRA +NCPW LW IS FEK+L F +Y++++
Sbjct: 366 LSVHSRAVRNCPWTVALWSRYLLAMERHGVDHRGISVTFEKALSAGFIQATDYVEIWQAY 425
Query: 138 IDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMK---NTDG--LLRLYAYWAHLE 192
+D LRRR+ F + L+ +R F RA +YL ++++ N G + WA +E
Sbjct: 426 LDYLRRRVDFKQDSSKELEE--LRSAFARALEYLKQEVEERFNESGDPSCLIMQNWARIE 483
Query: 193 QSMGKDMVSARGVWERLL-KISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGT 251
+ +M AR +W+ ++ K + W Y ++E R R + T
Sbjct: 484 ARLCNNMQKARELWDSIMTKGNAKYANMWLEYYNLERAHGDTQHCRKALHRAV--QCTSD 541
Query: 252 GSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESKSLPESADQKEHSVK 311
E +C L ER GTLED+D +VQK RL + ++Q K A +KE ++
Sbjct: 542 YPEHVCEVLLTMERTEGTLEDWDIAVQKTETRLARV----NEQRIK-----AAEKEAALA 592
Query: 312 KTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEENEGRETKQ 366
+ +E+ K++ ++ A+ +K A +K KK EK V E+ G E ++
Sbjct: 593 Q--QEEEKAE-----QRKRARAEKKALKKKKKTRGAEKNMVDEDDEKEWGDEEEE 640
>UNIPROTKB|E2QXZ2 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003107
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00386 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 GO:GO:0006396 GeneTree:ENSGT00550000074656
InterPro:IPR008669 Pfam:PF05391 OMA:SQAVMKM EMBL:AAEX03014754
Ensembl:ENSCAFT00000018071 Uniprot:E2QXZ2
Length = 1082
Score = 413 (150.4 bits), Expect = 2.0e-37, P = 2.0e-37
Identities = 105/362 (29%), Positives = 181/362 (50%)
Query: 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVV 77
+++ + +Y Y+ +E GDP RVQL++ERA+ + + DLW+ Y+QYLD+ LKV ++V
Sbjct: 424 AEAPRLAEYQAYIDFEMKIGDPARVQLIFERALVENCLVPDLWIRYSQYLDRQLKVKDLV 483
Query: 78 RDVYSRATKNCPWVGELWVXXXXXXXXXXXXXXXISTVFEKSLLCAFSTFEEYLDLFLTR 137
V++RA +NCPW LW IS FEK+L F +Y++++
Sbjct: 484 LSVHNRAVRNCPWTVALWTRYLLAMERHGVDHRVISVTFEKALSAGFIQATDYVEIWQAY 543
Query: 138 IDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMK---NTDG--LLRLYAYWAHLE 192
+D LRRR+ F + L+ +R F RA +YL ++++ N G + WA +E
Sbjct: 544 LDYLRRRVDFKQDSSKELEE--LRSAFTRALEYLKQEVEERFNESGDPSCMIMQNWARIE 601
Query: 193 QSMGKDMVSARGVWERLL-KISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGT 251
+ +M AR +W+ ++ K + W Y ++E R R + T
Sbjct: 602 ARLCNNMQKARELWDSIMTKGNAKYANMWLEYYNLERAHGDTQHCRKALHRAV--QCTSD 659
Query: 252 GSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESKSLPESADQKEHSVK 311
E +C L ER GTLED+D +VQK RL + ++Q K A +KE ++
Sbjct: 660 YPEHVCEVLLTMERTEGTLEDWDIAVQKTETRLARV----NEQRIK-----AAEKEAALA 710
Query: 312 KTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEENEGRETKQTVEEQ 371
+ +E+ K++ ++ A+ +K A +K KK +KR+ + E+ G + ++ ++
Sbjct: 711 Q--QEEEKAE-----QRKRARAEKKALKKKKKTRGADKRKAEEDDEKEWGDDEEEQPSKR 763
Query: 372 PK 373
K
Sbjct: 764 RK 765
>RGD|1311646 [details] [associations]
symbol:Sart3 "squamous cell carcinoma antigen recognized by
T-cells 3" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
RGD:1311646 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 GO:GO:0006396 EMBL:CH473973
GeneTree:ENSGT00550000074656 InterPro:IPR008669 Pfam:PF05391
CTD:9733 OMA:SQAVMKM OrthoDB:EOG4RXXZG IPI:IPI00371231
RefSeq:NP_001100626.1 UniGene:Rn.101480 Ensembl:ENSRNOT00000000891
GeneID:304582 KEGG:rno:304582 UCSC:RGD:1311646 NextBio:653335
Uniprot:D3ZAS8
Length = 960
Score = 408 (148.7 bits), Expect = 5.2e-37, P = 5.2e-37
Identities = 107/382 (28%), Positives = 179/382 (46%)
Query: 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVV 77
+++ + +Y Y+ +E GDP R+QL++ERA+ + + DLW+ Y+QYLD+ LKV ++V
Sbjct: 304 AEAPRLAEYQAYIDFEMKVGDPARIQLIFERALVENCLVPDLWIRYSQYLDRQLKVKDLV 363
Query: 78 RDVYSRATKNCPWVGELWVXXXXXXXXXXXXXXXISTVFEKSLLCAFSTFEEYLDLFLTR 137
V+SRA +NCPW LW IS FE +L F +Y++++
Sbjct: 364 LSVHSRAVRNCPWTVALWSRYLLAMERHGLDHQMISATFENALSAGFIQATDYVEIWQVY 423
Query: 138 IDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNT-----DGLLRLYAYWAHLE 192
+D LRRR+ F + L+ +R F RA +YL ++++ D + WA +E
Sbjct: 424 LDYLRRRVDFRQDSSKELEE--LRSMFTRALEYLQQEVEERFSESGDPSCLIMQSWARVE 481
Query: 193 QSMGKDMVSARGVWERLLKISGAML-EAWQSYISMEIELDHINEARSIYKRCYSKRFTGT 251
+ +M AR +W+ ++ A W Y ++E R R + T
Sbjct: 482 ARLCNNMQKARELWDSIMTRGNAKYANMWLEYYNLERAHGDTQHCRKALHRAV--QCTSD 539
Query: 252 GSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESKSLPESADQKEHSVK 311
E +C L ER GTLED+D ++QK RL + ++Q K A +KE ++
Sbjct: 540 YPEHVCEVLLTMERTEGTLEDWDLAIQKTETRLARV----NEQRMK-----AAEKEAALV 590
Query: 312 KTGREKRKSDSNISYEQSPAKRQK-HAPQKPKKVHDKEKRQVQNLAEENEGRETKQTVEE 370
+ EK + + E+ K++K K K D ++R+ EE E + +K+ E
Sbjct: 591 QQEEEKAEQRKKVRAEKKALKKKKTRGADKRKAGEDDDEREC---GEEEEEQPSKRRRME 647
Query: 371 QPKKQPIKDAVPGRTKGFTDEC 392
+ A TK + +C
Sbjct: 648 NSLASGVASAKEEETK-LSGKC 668
>UNIPROTKB|F1N0I9 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043231 "intracellular membrane-bounded organelle"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 InterPro:IPR008669
Pfam:PF05391 EMBL:DAAA02045494 IPI:IPI00842907
Ensembl:ENSBTAT00000045157 OMA:PYSMSEP Uniprot:F1N0I9
Length = 655
Score = 402 (146.6 bits), Expect = 6.1e-37, P = 6.1e-37
Identities = 104/372 (27%), Positives = 173/372 (46%)
Query: 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVV 77
+++ + +Y Y+ +E GDP R+QL++ERA+ + + DLW+ Y+QYLD+ LKV ++V
Sbjct: 3 AEAPRLAEYQAYIDFEMKIGDPARIQLIFERALVENCLVPDLWIRYSQYLDRQLKVKDLV 62
Query: 78 RDVYSRATKNCPWVGELWVXXXXXXXXXXXXXXXISTVFEKSLLCAFSTFEEYLDLFLTR 137
+SRA +NCPW LW IS FEK+L F +Y++++
Sbjct: 63 LSAHSRAVRNCPWTVALWSRYLLALERHGVEHRVISVTFEKALSAGFIQATDYVEIWQAY 122
Query: 138 IDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNT-----DGLLRLYAYWAHLE 192
+D LRRR+ F + L+ +R F RA +YL ++++ D + WA +E
Sbjct: 123 LDYLRRRVDFKQDSSKELEE--LRSAFARALEYLKQEVEERFSESGDPSCLIMQNWARIE 180
Query: 193 QSMGKDMVSARGVWERLLKISGAML-EAWQSYISMEIELDHINEARSIYKRCYSKRFTGT 251
+ +M AR +W+ ++ A W Y ++E R R + T
Sbjct: 181 ARLCNNMQKARELWDSIMTRGNAKFANMWLEYYNLERAHGDTQHCRKALHRAV--QCTSD 238
Query: 252 GSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESKSLPESADQKEHSVK 311
E +C L ER GTLED+D +VQK RL + ++Q K A +KE ++
Sbjct: 239 YPEHVCEVLLTMERTEGTLEDWDIAVQKTETRLARV----NEQRIK-----AAEKEAALA 289
Query: 312 KTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEENEGRETKQTVEEQ 371
+ EK + E+ K++K K D++ + EE + + ++
Sbjct: 290 QQEEEKVEQRKRARAEKKALKKKKKTRGADKHRADEDDEKEWGDDEEEQPSKRRRVENSV 349
Query: 372 PKKQPIKDAVPG 383
P P +A PG
Sbjct: 350 P---PAGEAEPG 358
>MGI|MGI:1858230 [details] [associations]
symbol:Sart3 "squamous cell carcinoma antigen recognized by
T cells 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
MGI:MGI:1858230 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 GeneTree:ENSGT00550000074656 InterPro:IPR008669
Pfam:PF05391 CTD:9733 HOGENOM:HOG000063708 HOVERGEN:HBG053888
OMA:SQAVMKM OrthoDB:EOG4RXXZG ChiTaRS:SART3 EMBL:AF172722
EMBL:AK053828 EMBL:AK129067 EMBL:AK086398 EMBL:BC036350
EMBL:BC057156 IPI:IPI00458854 IPI:IPI00471258 RefSeq:NP_058622.1
UniGene:Mm.29594 ProteinModelPortal:Q9JLI8 SMR:Q9JLI8 STRING:Q9JLI8
PhosphoSite:Q9JLI8 PaxDb:Q9JLI8 PRIDE:Q9JLI8
Ensembl:ENSMUST00000019118 GeneID:53890 KEGG:mmu:53890
UCSC:uc008yym.1 InParanoid:Q9JLI8 NextBio:310779 Bgee:Q9JLI8
Genevestigator:Q9JLI8 GermOnline:ENSMUSG00000018974 Uniprot:Q9JLI8
Length = 962
Score = 406 (148.0 bits), Expect = 8.6e-37, P = 8.6e-37
Identities = 104/382 (27%), Positives = 176/382 (46%)
Query: 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVV 77
+++ + +Y Y+ +E GDP R+QL++ERA+ + + DLW+ Y+QYLD+ LKV ++V
Sbjct: 306 AEAPRLAEYQAYIDFEMKIGDPARIQLIFERALVENCLVPDLWIRYSQYLDRQLKVKDLV 365
Query: 78 RDVYSRATKNCPWVGELWVXXXXXXXXXXXXXXXISTVFEKSLLCAFSTFEEYLDLFLTR 137
V+SRA +NCPW LW IS FE +L F +Y++++
Sbjct: 366 LSVHSRAVRNCPWTVALWSRYLLAMERHGLDHQTISATFENALSAGFIQATDYVEIWQVY 425
Query: 138 IDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNT-----DGLLRLYAYWAHLE 192
+D LRRR+ F + L+ +R F RA +YL ++++ D + WA +E
Sbjct: 426 LDYLRRRVDFRQDSSKELEE--LRSMFTRALEYLQQEVEERFSESGDPSCLIMQSWARVE 483
Query: 193 QSMGKDMVSARGVWERLLKISGAML-EAWQSYISMEIELDHINEARSIYKRCYSKRFTGT 251
+ +M AR +W+ ++ A W Y ++E R R + T
Sbjct: 484 ARLCNNMQKARELWDSIMTRGNAKYANMWLEYYNLERAHGDTQHCRKALHRAV--QCTSD 541
Query: 252 GSEDICHAWLRFEREYGTLEDFDHSVQKVTPRL---EELRLFRSQQESKSLPESADQKEH 308
E +C L ER GTLED+D ++QK RL E R+ +++E+ +L + ++K
Sbjct: 542 YPEHVCEVLLTMERTEGTLEDWDLAIQKTETRLARVNEQRMKAAEKEA-ALVQQEEEKAE 600
Query: 309 SVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKE----KRQVQNLAEENEGRET 364
KK EK+ + +R+ + ++E +R+ +N E
Sbjct: 601 QRKKVRAEKKALKKKKKTRGADKRREDEDEENEWGEEEEEQPSKRRRTENSLASGEASAM 660
Query: 365 KQTVEEQPKKQPIKDAVPGRTK 386
K+ E K I P + K
Sbjct: 661 KEETELSGKCLTIDVGPPSKQK 682
>UNIPROTKB|F8VV04 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR000504
InterPro:IPR003107 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00386 GO:GO:0043231 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006396 EMBL:AC008119
HGNC:HGNC:16860 ChiTaRS:SART3 EMBL:AC010206 IPI:IPI01022491
ProteinModelPortal:F8VV04 SMR:F8VV04 Ensembl:ENST00000546815
UCSC:uc010swy.1 ArrayExpress:F8VV04 Bgee:F8VV04 Uniprot:F8VV04
Length = 771
Score = 399 (145.5 bits), Expect = 2.7e-36, P = 2.7e-36
Identities = 99/351 (28%), Positives = 171/351 (48%)
Query: 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVV 77
+++ + +Y Y+ +E GDP R+QL++ERA+ + + DLW+ Y+QYLD+ LKV ++V
Sbjct: 323 AEAPRLAEYQAYIDFEMKIGDPARIQLIFERALVENCLVPDLWIRYSQYLDRQLKVKDLV 382
Query: 78 RDVYSRATKNCPWVGELWVXXXXXXXXXXXXXXXISTVFEKSLLCAFSTFEEYLDLFLTR 137
V++RA +NCPW LW IS FEK+L F +Y++++
Sbjct: 383 LSVHNRAIRNCPWTVALWSRYLLAMERHGVDHQVISVTFEKALNAGFIQATDYVEIWQAY 442
Query: 138 IDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMK---NTDG--LLRLYAYWAHLE 192
+D LRRR+ F + L+ +R F RA +YL ++++ N G + WA +E
Sbjct: 443 LDYLRRRVDFKQDSSKELEE--LRAAFTRALEYLKQEVEERFNESGDPSCVIMQNWARIE 500
Query: 193 QSMGKDMVSARGVWERLLKISGAML-EAWQSYISMEIELDHINEARSIYKRCYSKRFTGT 251
+ +M AR +W+ ++ A W Y ++E R R + T
Sbjct: 501 ARLCNNMQKARELWDSIMTRGNAKYANMWLEYYNLERAHGDTQHCRKALHRAV--QCTSD 558
Query: 252 GSEDICHAWLRFEREYGTLEDFDHSVQKVTPRL---EELRLFRSQQESKSLPESADQKEH 308
E +C L ER G+LED+D +VQK RL E R+ +++E+ + + ++ E
Sbjct: 559 YPEHVCEVLLTMERTEGSLEDWDIAVQKTETRLARVNEQRMKAAEKEAALVQQEEEKAEQ 618
Query: 309 SVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEEN 359
+K R ++K+ + P KR + + D+E++ + EN
Sbjct: 619 --RKRARAEKKALKKKKKIRGPEKRGADEDDEKEWGDDEEEQPSKRRRVEN 667
>UNIPROTKB|Q15020 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR000504
InterPro:IPR003107 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00386 EMBL:AB020880 GO:GO:0043231
GO:GO:0005737 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 InterPro:IPR008669 Pfam:PF05391
eggNOG:NOG321927 EMBL:AF387506 EMBL:D63879 EMBL:AK290209
EMBL:BC032601 EMBL:BC041638 EMBL:BC093784 EMBL:BC103706
EMBL:BC111983 IPI:IPI00006025 IPI:IPI00383381 IPI:IPI01022779
RefSeq:NP_055521.1 UniGene:Hs.584842 PDB:2DO4 PDBsum:2DO4
ProteinModelPortal:Q15020 SMR:Q15020 IntAct:Q15020
MINT:MINT-2867335 STRING:Q15020 PhosphoSite:Q15020 DMDM:74762140
PaxDb:Q15020 PeptideAtlas:Q15020 PRIDE:Q15020
Ensembl:ENST00000228284 Ensembl:ENST00000546611
Ensembl:ENST00000546728 GeneID:9733 KEGG:hsa:9733 UCSC:uc001tmy.1
UCSC:uc001tnb.3 CTD:9733 GeneCards:GC12M108915 HGNC:HGNC:16860
HPA:HPA044322 MIM:175900 MIM:611684 neXtProt:NX_Q15020
Orphanet:79152 PharmGKB:PA34948 HOGENOM:HOG000063708
HOVERGEN:HBG053888 InParanoid:Q15020 OMA:SQAVMKM OrthoDB:EOG4RXXZG
PhylomeDB:Q15020 ChiTaRS:SART3 EvolutionaryTrace:Q15020
GenomeRNAi:9733 NextBio:36616 ArrayExpress:Q15020 Bgee:Q15020
CleanEx:HS_SART3 Genevestigator:Q15020 GermOnline:ENSG00000075856
Uniprot:Q15020
Length = 963
Score = 399 (145.5 bits), Expect = 4.9e-36, P = 4.9e-36
Identities = 99/351 (28%), Positives = 171/351 (48%)
Query: 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVV 77
+++ + +Y Y+ +E GDP R+QL++ERA+ + + DLW+ Y+QYLD+ LKV ++V
Sbjct: 305 AEAPRLAEYQAYIDFEMKIGDPARIQLIFERALVENCLVPDLWIRYSQYLDRQLKVKDLV 364
Query: 78 RDVYSRATKNCPWVGELWVXXXXXXXXXXXXXXXISTVFEKSLLCAFSTFEEYLDLFLTR 137
V++RA +NCPW LW IS FEK+L F +Y++++
Sbjct: 365 LSVHNRAIRNCPWTVALWSRYLLAMERHGVDHQVISVTFEKALNAGFIQATDYVEIWQAY 424
Query: 138 IDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMK---NTDG--LLRLYAYWAHLE 192
+D LRRR+ F + L+ +R F RA +YL ++++ N G + WA +E
Sbjct: 425 LDYLRRRVDFKQDSSKELEE--LRAAFTRALEYLKQEVEERFNESGDPSCVIMQNWARIE 482
Query: 193 QSMGKDMVSARGVWERLLKISGAML-EAWQSYISMEIELDHINEARSIYKRCYSKRFTGT 251
+ +M AR +W+ ++ A W Y ++E R R + T
Sbjct: 483 ARLCNNMQKARELWDSIMTRGNAKYANMWLEYYNLERAHGDTQHCRKALHRAV--QCTSD 540
Query: 252 GSEDICHAWLRFEREYGTLEDFDHSVQKVTPRL---EELRLFRSQQESKSLPESADQKEH 308
E +C L ER G+LED+D +VQK RL E R+ +++E+ + + ++ E
Sbjct: 541 YPEHVCEVLLTMERTEGSLEDWDIAVQKTETRLARVNEQRMKAAEKEAALVQQEEEKAEQ 600
Query: 309 SVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEEN 359
+K R ++K+ + P KR + + D+E++ + EN
Sbjct: 601 --RKRARAEKKALKKKKKIRGPEKRGADEDDEKEWGDDEEEQPSKRRRVEN 649
>UNIPROTKB|F1NUL7 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 EMBL:AADN02034959
EMBL:AADN02034960 EMBL:AADN02034961 EMBL:AADN02034962
EMBL:AADN02034963 IPI:IPI00819201 Ensembl:ENSGALT00000038897
ArrayExpress:F1NUL7 Uniprot:F1NUL7
Length = 857
Score = 368 (134.6 bits), Expect = 8.0e-33, P = 8.0e-33
Identities = 102/345 (29%), Positives = 162/345 (46%)
Query: 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVV 77
+++ K +Y Y+ +E +GDP R+QL+YERA+ + + DLW Y QYLD+ LKV +V
Sbjct: 243 AETPKLAEYQAYIDFEMKAGDPARIQLIYERALAENCLVPDLWARYNQYLDRQLKVKELV 302
Query: 78 RDVYSRATKNCPWVGELWVXXXXXXXXXXXXXXXISTVFEKSLLCAFSTFEEYLDLFLTR 137
+ RA +NCPW LW+ IS +FEK+L F +Y++++
Sbjct: 303 LSAHDRAVRNCPWTVGLWIQYLLAMERHGVDHCIISDMFEKALNAGFIQATDYVEIWQAY 362
Query: 138 IDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNT-----DGLLRLYAYWAH-L 191
+D LRRR+ F+ + L+ +R F RA +YL ++++ D + WA +
Sbjct: 363 LDYLRRRVDFTQDSSKELEE--LRSAFARAVEYLKQEVEERFSESGDPSCTIMQNWAREI 420
Query: 192 EQSMGKDMVSARGVWERLLKISGAMLEA--WQSYISMEIELDHINEARSIYKRCYSKRFT 249
KD + +W LL G +A + Y ++E R R + T
Sbjct: 421 WLDWLKDEIKMASLWYDLLS-QGMPKDANMGREYYNLERAHGDTQHCRKALHRAV--QCT 477
Query: 250 GTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRL---EELRLFRSQQESKSLPESADQK 306
E +C L ER GTLED+D +VQK RL E R ++ SK E+ +
Sbjct: 478 SDYPEHVCEVLLTLERIEGTLEDWDAAVQKTENRLARVNEQRAKLRRKPSKLNKENMSFQ 537
Query: 307 EHSVKKTGREKRKSDSN-ISYEQSPAKRQKHAPQKPKK-VHDKEK 349
HS + ++ K D + + E+ + P+KP + KEK
Sbjct: 538 FHSSAEQPSKRHKGDGDGLLLEEE----MESGPEKPDHPTNQKEK 578
>UNIPROTKB|F1NF69 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 EMBL:AADN02034959
EMBL:AADN02034960 EMBL:AADN02034961 EMBL:AADN02034962
EMBL:AADN02034963 IPI:IPI00577406 Ensembl:ENSGALT00000007806
ArrayExpress:F1NF69 Uniprot:F1NF69
Length = 772
Score = 309 (113.8 bits), Expect = 1.4e-26, P = 1.4e-26
Identities = 96/390 (24%), Positives = 173/390 (44%)
Query: 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYL---------- 67
+++ K +Y Y+ +E +GDP R+QL+YERA+ + + DLW Y QYL
Sbjct: 183 AETPKLAEYQAYIDFEMKAGDPARIQLIYERALAENCLVPDLWARYNQYLVRSSPDLTWH 242
Query: 68 -DKTLKVGNVVRDVYSRATKNCPWVGELWVXXXXXXXXXXXXXXXISTVFEKSLLCAFST 126
D+ LKV +V + RA +NCPW LW+ IS +FEK+L F
Sbjct: 243 RDRQLKVKELVLSAHDRAVRNCPWTVGLWIQYLLAMERHGVDHCIISDMFEKALNAGFIQ 302
Query: 127 FEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNT-----DGL 181
+Y++++ +D LRRR+ F+ + L+ +R F RA +YL ++++ D
Sbjct: 303 ATDYVEIWQAYLDYLRRRVDFTQDSSKELEE--LRSAFARAVEYLKQEVEERFSESGDPS 360
Query: 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKISG---AMLEAWQSYISMEIELDHINEARS 238
+ WA +E ++ +W +K + ++ W Y+ + +E H + +
Sbjct: 361 CTIMQNWARVEYRHAENPGKILQLWFCKVKANDFEQLVVGLWIQYL-LAMERAH-GDTQH 418
Query: 239 IYKRCY-SKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESK 297
K + + + T E +C L ER G + LE+ + E++
Sbjct: 419 CRKALHRAVQCTSDYPEHVCEVLLTLERIEGNKLHIISFYSVLLGTLEDWDAAVQKTENR 478
Query: 298 SLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAE 357
L +Q+ + +K R+ + ++ ++ +K A +K KK EKR+ + E
Sbjct: 479 -LARVNEQRAKAAEKEAALARQEEEKAE-QRKQSRAEKKASKKAKKNRIGEKRKADDDDE 536
Query: 358 ENEGRETKQTVEEQPKKQ-PIKDAVPGRTK 386
G+E K + ++ + P K P K
Sbjct: 537 GEWGQEDKDPLRQREHESGPEKPDHPTNQK 566
>WB|WBGene00007111 [details] [associations]
symbol:B0035.12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0018991
"oviposition" evidence=IMP] [GO:0051301 "cell division"
evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] InterPro:IPR000504 InterPro:IPR003107
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00386 GO:GO:0008340 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0018991 GO:GO:0040010 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003676
GO:GO:0005622 GO:GO:0006396 GO:GO:0000910 EMBL:Z73102
GeneTree:ENSGT00550000074656 HSSP:P33240 InterPro:IPR008669
Pfam:PF05391 eggNOG:NOG321927 OMA:SQAVMKM PIR:T18650
RefSeq:NP_502136.1 ProteinModelPortal:Q17430 SMR:Q17430
STRING:Q17430 PaxDb:Q17430 EnsemblMetazoa:B0035.12.1
EnsemblMetazoa:B0035.12.2 EnsemblMetazoa:B0035.12.3 GeneID:178053
KEGG:cel:CELE_B0035.12 UCSC:B0035.12.1 CTD:178053 WormBase:B0035.12
HOGENOM:HOG000017964 InParanoid:Q17430 NextBio:899522
Uniprot:Q17430
Length = 836
Score = 247 (92.0 bits), Expect = 4.2e-18, P = 4.2e-18
Identities = 80/318 (25%), Positives = 138/318 (43%)
Query: 3 NARAHLEEQISR-QDLSDSE--KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDL 59
N+ +EQ+S+ ++L E K Q + +E+ SG P R+++ +ER +++ +
Sbjct: 224 NSTMRQKEQLSKFEELIQQEETKKQGLKQFFDHEKKSGIPSRIKMAHERLVSELDDDEEA 283
Query: 60 WLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVXXXXXXXXXXXXXXXISTVFEKS 119
W+ Y + D LK+ V VYSRA ++CP+ L I ++E++
Sbjct: 284 WIAYGAWADIELKLPQVAVKVYSRALRHCPYSFVLHQQALLAFERDRRPNEEIDALWERA 343
Query: 120 LLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNT- 178
++ EE L+ T LRRRI +G DYS + E F + L E
Sbjct: 344 RSNVINSAEEGRSLYRTYAFLLRRRIHLTGSS----DYSPMAEVFDEGAALLREWFSMAW 399
Query: 179 DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS-GAMLEAWQSYISMEIELDHINEAR 237
D A+ S+ K+M R +W +L G W + +E + AR
Sbjct: 400 DTTADYRQMQAYFYASLMKNMDKCRNIWNDILASGFGRFAGKWIEAVRLERQFGDKENAR 459
Query: 238 SIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQE-- 295
+ + +I +++FERE GTL + D ++KV ++ R R Q++
Sbjct: 460 KYLNKALNS--VSDNINEIYMYYVQFEREEGTLAELDLVLEKVNSQVAH-RAIRPQKKVS 516
Query: 296 SKSLPESADQKEHSVKKT 313
K P +++H K+T
Sbjct: 517 EKPAPAPKSKQDHIQKRT 534
>UNIPROTKB|B7ZKM0 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR003107 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00386 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 GO:GO:0006396 EMBL:AC008119
InterPro:IPR008669 Pfam:PF05391 UniGene:Hs.584842 HGNC:HGNC:16860
HOVERGEN:HBG053888 ChiTaRS:SART3 EMBL:AC010206 EMBL:BC143253
IPI:IPI00719256 SMR:B7ZKM0 STRING:B7ZKM0 Ensembl:ENST00000431469
UCSC:uc010swx.1 Uniprot:B7ZKM0
Length = 927
Score = 206 (77.6 bits), Expect = 5.9e-17, Sum P(2) = 5.9e-17
Identities = 41/116 (35%), Positives = 65/116 (56%)
Query: 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVV 77
+++ + +Y Y+ +E GDP R+QL++ERA+ + + DLW+ Y+QYLD+ LKV ++V
Sbjct: 305 AEAPRLAEYQAYIDFEMKIGDPARIQLIFERALVENCLVPDLWIRYSQYLDRQLKVKDLV 364
Query: 78 RDVYSRATKNCPWVGELWVXXXXXXXXXXXXXXXISTVFEK--SLLCAFSTFEEYL 131
V++RA +NCPW LW IS ++ L AF+ EYL
Sbjct: 365 LSVHNRAIRNCPWTVALWSRYLLAMERHGVDHQVISDSSKELEELRAAFTRALEYL 420
Score = 194 (73.4 bits), Expect = 5.2e-12, P = 5.2e-12
Identities = 76/329 (23%), Positives = 143/329 (43%)
Query: 46 YERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRD--VYSRA-TKNCPWVGELWVXXXXXX 102
YE A+ + +Y Y+D +K+G+ R ++ RA +NC V +LW+
Sbjct: 298 YEEALLQ--AEAPRLAEYQAYIDFEMKIGDPARIQLIFERALVENC-LVPDLWIRYSQYL 354
Query: 103 XXXXXXXXXISTVFEKSLL-CAFST--FEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSL 159
+ +V +++ C ++ + YL L + R G+ +++ E L+
Sbjct: 355 DRQLKVKDLVLSVHNRAIRNCPWTVALWSRYL-LAMER-HGVDHQVISDSSKE--LEE-- 408
Query: 160 IRETFQRASDYLSEQMK---NTDG--LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG 214
+R F RA +YL ++++ N G + WA +E + +M AR +W+ ++
Sbjct: 409 LRAAFTRALEYLKQEVEERFNESGDPSCVIMQNWARIEARLCNNMQKARELWDSIMTRGN 468
Query: 215 AML-EAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDF 273
A W Y ++E R R + T E +C L ER G+LED+
Sbjct: 469 AKYANMWLEYYNLERAHGDTQHCRKALHRAV--QCTSDYPEHVCEVLLTMERTEGSLEDW 526
Query: 274 DHSVQKVTPRL---EELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSP 330
D +VQK RL E R+ +++E+ + + ++ E +K R ++K+ + P
Sbjct: 527 DIAVQKTETRLARVNEQRMKAAEKEAALVQQEEEKAEQ--RKRARAEKKALKKKKKIRGP 584
Query: 331 AKRQKHAPQKPKKVHDKEKRQVQNLAEEN 359
KR + + D+E++ + EN
Sbjct: 585 EKRGADEDDEKEWGDDEEEQPSKRRRVEN 613
Score = 79 (32.9 bits), Expect = 5.9e-17, Sum P(2) = 5.9e-17
Identities = 26/114 (22%), Positives = 60/114 (52%)
Query: 276 SVQKVTPRLEELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQK 335
++++ LE+ + + E++ L +Q+ + +K ++ + ++ A+ +K
Sbjct: 515 TMERTEGSLEDWDIAVQKTETR-LARVNEQRMKAAEKEAALVQQEEEKAE-QRKRARAEK 572
Query: 336 HAPQKPKKVHDKEKRQVQNLAEENEGRETKQTVEEQP-KKQPIKDAVP--GRTK 386
A +K KK+ EKR A+E++ +E EEQP K++ +++++P G T+
Sbjct: 573 KALKKKKKIRGPEKRG----ADEDDEKEWGDDEEEQPSKRRRVENSIPAAGETQ 622
>DICTYBASE|DDB_G0291836 [details] [associations]
symbol:DDB_G0291836 "Squamous cell carcinoma antigen
recognized by T-cells 3" species:44689 "Dictyostelium discoideum"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
dictyBase:DDB_G0291836 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 GO:GO:0006396 EMBL:AAFI02000185
eggNOG:COG5107 OMA:SQAVMKM RefSeq:XP_629950.1
ProteinModelPortal:Q54E37 EnsemblProtists:DDB0191602 GeneID:8628356
KEGG:ddi:DDB_G0291836 InParanoid:Q54E37 Uniprot:Q54E37
Length = 949
Score = 162 (62.1 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 52/220 (23%), Positives = 98/220 (44%)
Query: 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA 215
D L++ F+ ++ +S N + Y Y A E D+ R + + +L I +
Sbjct: 506 DKQLMKSLFETMNNQMSTIDVNNYTTVDRYMYIAQFEWRQFNDLSRYREIVDYVLSIDPS 565
Query: 216 MLEAWQSYISMEIELDHINEARSIYKRCYSK-RFTGTGSEDICHAWLRFEREYGTLEDFD 274
W YIS E+E R ++K+ S RF S I W FER YG + +
Sbjct: 566 QYWIWCQYISFEMEQKQFQSVRELFKKASSHIRFDDPSSR-IWQDWFTFERGYGDINQY- 623
Query: 275 HSVQKVTPRLEELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQ 334
+ V+ R ++ ++++ + L + Q++ ++ R K K D E+ +K+Q
Sbjct: 624 ---RAVSDRYSIIQNKYNKEQERYLQQQQQQQQKQQQQNKR-KEKDDGKNKDEKRISKKQ 679
Query: 335 KHAPQKPKKVHDKEKRQVQNLAEENEGRETKQTVEEQPKK 374
K+ K K D+ K+ + +++ + +E ++ PKK
Sbjct: 680 KNENHKEKGDQDEFKKPLPPTSKKEKEKE-----KDLPKK 714
Score = 113 (44.8 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 25/91 (27%), Positives = 45/91 (49%)
Query: 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYT 64
R E + + D K+++Y+ + K +Q + P RV L+ER + F +W Y
Sbjct: 310 REPFEIALKEKKYLDQRKWKEYIEFEKQQQHNDKPMRVATLFERQLKSFSNHFSIWSFYL 369
Query: 65 QYLDKTLKVGNVVRDVYSRATKNCPWVGELW 95
YL+K ++ V+SR+ ++ + GE W
Sbjct: 370 TYLEKFTNFKDLHLKVFSRSLRSIYYSGEHW 400
Score = 60 (26.2 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 25/92 (27%), Positives = 45/92 (48%)
Query: 3 NARAHLEEQISRQDLSDS-EKFQQYM-----IYL-------KYEQSSGDPGRVQLLYERA 49
NA + +Q + Q L ++ EKFQ I+L KY ++ D + LYE+A
Sbjct: 99 NALSKFTKQSNYQTLREAREKFQSIHPLSQDIWLAWFSDEQKYMKTDNDKQYILSLYEKA 158
Query: 50 ITDFPVSSDLWLDYTQYLDK-TLKVGNVVRDV 80
+ DF +S + + Y +++ K G ++ +V
Sbjct: 159 LNDF-ISVKINVSYCKFIIKINTNSGGLINNV 189
Score = 45 (20.9 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 17/74 (22%), Positives = 31/74 (41%)
Query: 14 RQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKV 73
R+D EK Y+ L + ++ E+ + P+S D+WL + K +K
Sbjct: 85 REDPYSFEKNLNYINALSKFTKQSNYQTLREAREKFQSIHPLSQDIWLAWFSDEQKYMKT 144
Query: 74 GN---VVRDVYSRA 84
N + +Y +A
Sbjct: 145 DNDKQYILSLYEKA 158
>POMBASE|SPBC1861.04c [details] [associations]
symbol:SPBC1861.04c "RNA-binding protein Prp24
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000244
"assembly of spliceosomal tri-snRNP" evidence=ISO] [GO:0000245
"spliceosomal complex assembly" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005688 "U6 snRNP" evidence=ISO] [GO:0017069
"snRNA binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR003107
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00386 PomBase:SPBC1861.04c GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0000244 GO:GO:0017069 GO:GO:0000245
GO:GO:0005688 OrthoDB:EOG486CNQ InterPro:IPR008669 Pfam:PF05391
eggNOG:NOG321927 OMA:SQAVMKM PIR:T39743 RefSeq:NP_596721.1
HSSP:P49960 ProteinModelPortal:Q9USY2 EnsemblFungi:SPBC1861.04c.1
GeneID:2539617 KEGG:spo:SPBC1861.04c NextBio:20800774
Uniprot:Q9USY2
Length = 1014
Score = 162 (62.1 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 60/235 (25%), Positives = 94/235 (40%)
Query: 18 SDSEKFQQYMIYLKYE--QSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGN 75
S + + YM + E +S+ + + LYERAI +P+ +LWL YT +L K +
Sbjct: 265 SANHSLEAYMDLINDESRRSTAELQYITTLYERAIVLYPLIPELWLQYTAWLSKVDFSSS 324
Query: 76 VVRDVYSRATKNCPWVGELWVXXXXXXXXXXXXXXXISTVFEKSLLCAFST----FEEYL 131
V RAT+NC W+G +W S V E+ C S F+E +
Sbjct: 325 QASSVAERATRNCSWIGRIW---SIKLTYMTLSGASTSAVCEEKDRCLNSNLLVNFDEVI 381
Query: 132 DLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNT-DGLLRLYAYWAH 190
D F G + L+ E ++ + DYL + K + D +R+ +
Sbjct: 382 DFF----SGFLKACLYLSSNEDK-PQEFLKHQIHKVEDYLRKNHKGSKDARMRIELSKIY 436
Query: 191 LEQSMGKDMVSARGVWERLLKISGAMLEAWQS-YIS-MEIELDHINEA--RSIYK 241
L + D S W + W S YIS M+ + E +S+YK
Sbjct: 437 LYSEIS-DFESVEKCWSDMFHDFQNQALYWISRYISTMKYNPELAAETLKKSLYK 490
Score = 54 (24.1 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 349 KRQVQNLAEENEGRETKQTVEE-QPKKQPIKDAVPGRTK 386
KRQ+ + AEE TKQTVE +P K P D +K
Sbjct: 531 KRQLDSFAEE-----TKQTVENTEPLKVPQADDTAALSK 564
>TAIR|locus:2152965 [details] [associations]
symbol:AT5G41770 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 PROSITE:PS50293 SMART:SM00386 EMBL:CP002688
GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 KO:K12869 OMA:KFTFAKI
IPI:IPI00530971 RefSeq:NP_198992.2 UniGene:At.9341
ProteinModelPortal:F4JZX8 SMR:F4JZX8 PRIDE:F4JZX8
EnsemblPlants:AT5G41770.1 GeneID:834182 KEGG:ath:AT5G41770
Uniprot:F4JZX8
Length = 705
Score = 107 (42.7 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYT 64
R E+QI R + Q ++ Y ++E+S D R + ++ERAI + LWL Y
Sbjct: 78 RKEFEDQIRRARWN----IQVWVKYAQWEESQKDYARARSVWERAIEGDYRNHTLWLKYA 133
Query: 65 QYLDKTLKVGNVVRDVYSRATKNCPWVGELW 95
++ K K N R+V+ RA P V +LW
Sbjct: 134 EFEMKN-KFVNSARNVWDRAVTLLPRVDQLW 163
Score = 90 (36.7 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 21/67 (31%), Positives = 39/67 (58%)
Query: 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKR 242
+L+ + H+E+ +G ++ AR ++ER + S + W S+I E+ + I AR+IY+R
Sbjct: 161 QLWYKYIHMEEILG-NIAGARQIFERWMDWSPDQ-QGWLSFIKFELRYNEIERARTIYER 218
Query: 243 ---CYSK 246
C+ K
Sbjct: 219 FVLCHPK 225
Score = 71 (30.1 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 24/96 (25%), Positives = 42/96 (43%)
Query: 185 YAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEA---WQSYISMEIELDHINEARSIYK 241
Y +A E G ++ R V+ER + EA + ++ E + AR IYK
Sbjct: 229 YIRYAKFEMK-GGEVARCRSVYERATEKLADDEEAEILFVAFAEFEERCKEVERARFIYK 287
Query: 242 RCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSV 277
G +ED+ ++ FE++YG E + ++
Sbjct: 288 FALDHIPKGR-AEDLYRKFVAFEKQYGDKEGIEDAI 322
Score = 62 (26.9 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 22/84 (26%), Positives = 35/84 (41%)
Query: 226 MEIELDHINEARSIYKRC--YSKRFTGTGSED---ICHAWLRFEREYGTLEDFDHSVQKV 280
+E + D I AR+I+ R Y K T E+ + WL E +G L D K+
Sbjct: 590 IEHKKDCIKRARAIFDRANTYYKDSTPELKEERATLLEDWLNMESSFGNLGDVSIVQSKL 649
Query: 281 TPRLEELRLFRSQQESKSLPESAD 304
+L++ + + S E D
Sbjct: 650 PKKLKKRKAITREDGSTEYEEYID 673
>TAIR|locus:2080853 [details] [associations]
symbol:AT3G51110 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 PROSITE:PS50293 SMART:SM00386 EMBL:CP002686
GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 IPI:IPI00546615
RefSeq:NP_566944.1 UniGene:At.857 ProteinModelPortal:F4J390
SMR:F4J390 EnsemblPlants:AT3G51110.1 GeneID:824275
KEGG:ath:AT3G51110 OMA:ERSHTIF Uniprot:F4J390
Length = 413
Score = 102 (41.0 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 30/92 (32%), Positives = 48/92 (52%)
Query: 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD-LWLDY 63
R E+QI R ++S Q ++ Y +E+S D R + ++ERA+ D + LWL Y
Sbjct: 57 RKEFEDQI-RGAKTNS---QVWVRYADWEESQKDHDRARSVWERALEDESYRNHTLWLKY 112
Query: 64 TQYLDKTLKVGNVVRDVYSRATKNCPWVGELW 95
++ + V N R+V+ RA K P V + W
Sbjct: 113 AEFEMRNKSV-NHARNVWDRAVKILPRVDQFW 143
Score = 86 (35.3 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 38/162 (23%), Positives = 75/162 (46%)
Query: 185 YAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKR-- 242
Y Y H+E+ +G ++ AR ++ER + S +AW +I E+ + I +RSIY+R
Sbjct: 144 YKY-IHMEEILG-NIDGARKIFERWMDWSPDQ-QAWLCFIKFELRYNEIERSRSIYERFV 200
Query: 243 -CYSK--------RFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELR-LFRS 292
C+ K +F S+ + A + +ER L+D + + + E L +
Sbjct: 201 LCHPKASSFIRYAKFEMKNSQ-VSLARIVYERAIEMLKDVEEEAEMIFVAFAEFEELCKE 259
Query: 293 QQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQ 334
+ ++ L + A +H K GR + +++E+ ++
Sbjct: 260 VERARFLYKYA--LDHIPK--GRAEDLYKKFVAFEKQYGNKE 297
Score = 70 (29.7 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 26/89 (29%), Positives = 44/89 (49%)
Query: 195 MGKDMVS-ARGVWERLLK-ISGAMLEAWQSYISM-EIE--LDHINEARSIYKRCYSKRFT 249
M VS AR V+ER ++ + EA +++ E E + AR +YK Y+
Sbjct: 217 MKNSQVSLARIVYERAIEMLKDVEEEAEMIFVAFAEFEELCKEVERARFLYK--YALDHI 274
Query: 250 GTG-SEDICHAWLRFEREYGTLEDFDHSV 277
G +ED+ ++ FE++YG E D ++
Sbjct: 275 PKGRAEDLYKKFVAFEKQYGNKEGIDDAI 303
Score = 60 (26.2 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 30/106 (28%), Positives = 46/106 (43%)
Query: 149 GEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMG-KDMVSARGVWE 207
G EG+ D + R Q Y E KN + Y + LE+++G KD + R V+E
Sbjct: 294 GNKEGIDDAIVGRRKLQ----YEGEVRKNPLNYDSWFDYIS-LEETLGDKDRI--REVYE 346
Query: 208 RLLKISGAMLEA--WQSYISM--------EIELDHINEARSIYKRC 243
R + E WQ YI + EI + + R++Y+ C
Sbjct: 347 RAIANVPLAEEKRYWQRYIYLWIDYALFEEILAEDVERTRAVYREC 392
>TAIR|locus:2161363 [details] [associations]
symbol:AT5G45990 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA;ISS]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 Pfam:PF05843 PROSITE:PS50293 SMART:SM00386
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006397
Gene3D:1.25.40.10 EMBL:AB006698 eggNOG:NOG327505
HOGENOM:HOG000207972 IPI:IPI00521045 RefSeq:NP_199411.1
UniGene:At.55396 ProteinModelPortal:Q9FNM3 SMR:Q9FNM3 PaxDb:Q9FNM3
PRIDE:Q9FNM3 EnsemblPlants:AT5G45990.1 GeneID:834639
KEGG:ath:AT5G45990 TAIR:At5g45990 InParanoid:Q9FNM3 OMA:SAFIRYA
PhylomeDB:Q9FNM3 ProtClustDB:CLSN2684756 Genevestigator:Q9FNM3
Uniprot:Q9FNM3
Length = 673
Score = 102 (41.0 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 28/91 (30%), Positives = 46/91 (50%)
Query: 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYT 64
R E+QI R + Q ++ Y K+E+S D R + ++ERA+ + LW+ Y
Sbjct: 64 RKEFEDQIRRARWN----IQVWVKYAKWEESQMDYARARSVWERALEGEYRNHTLWVKYA 119
Query: 65 QYLDKTLKVGNVVRDVYSRATKNCPWVGELW 95
++ K V N R+V+ R+ P V +LW
Sbjct: 120 EFEMKNKFVNNA-RNVWDRSVTLLPRVDQLW 149
Score = 98 (39.6 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 26/94 (27%), Positives = 46/94 (48%)
Query: 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD------ 58
R E+++S+ L+ + + Y++ E+S G+ R++ +YERAI + P + +
Sbjct: 314 RFEYEDEVSKNPLN----YDSWFDYVRLEESVGNKDRIREIYERAIANVPPAQEKRFWQR 369
Query: 59 ---LWLDYTQYLDKTLKVGNVVRDVYSRATKNCP 89
LW++Y Y + K RDVY K P
Sbjct: 370 YIYLWINYALYEEIETKDVERTRDVYRECLKLIP 403
Score = 89 (36.4 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 21/67 (31%), Positives = 39/67 (58%)
Query: 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKR 242
+L+ + ++E+ +G ++ AR ++ER + S +AW +I E+ + I ARSIY+R
Sbjct: 147 QLWEKYIYMEEKLG-NVTGARQIFERWMNWSPDQ-KAWLCFIKFELRYNEIERARSIYER 204
Query: 243 ---CYSK 246
C+ K
Sbjct: 205 FVLCHPK 211
Score = 71 (30.1 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 24/93 (25%), Positives = 41/93 (44%)
Query: 188 WAHLEQSMGKDMVSARGVWERLLKISGAMLEA---WQSYISMEIELDHINEARSIYKRCY 244
+A E G + AR V+ER + EA + S+ E + AR IYK
Sbjct: 218 YAKFEMKRGGQVKLAREVYERAVDKLANDEEAEILFVSFAEFEERCKEVERARFIYKFAL 277
Query: 245 SKRFTGTGSEDICHAWLRFEREYGTLEDFDHSV 277
G +E++ ++ FE++YG E + ++
Sbjct: 278 DHIRKGR-AEELYKKFVAFEKQYGDKEGIEDAI 309
Score = 70 (29.7 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 33/131 (25%), Positives = 52/131 (39%)
Query: 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIEL-----DHINEARS 238
L+ + E S G + R ++ERLL + + W S+ E D I AR
Sbjct: 515 LWKTYIDFEISEG-EFEKTRALYERLLDRT-KHCKVWISFAKFEASASEHKEDGIKSARV 572
Query: 239 IYKRC--YSKRFTGTGSED---ICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQ 293
I+ R Y K T E+ + WL E +G L D K+ +L++ ++ +
Sbjct: 573 IFDRANTYYKDTTPELEEERATLLEDWLNMETGFGELGDVSVVQSKLPKKLKKRKMTSRE 632
Query: 294 QESKSLPESAD 304
S E D
Sbjct: 633 DGSTEYEEYFD 643
>UNIPROTKB|F1MZT2 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000245 "spliceosomal
complex assembly" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 OMA:KFTFAKI GeneTree:ENSGT00550000074931
EMBL:DAAA02035750 IPI:IPI01017666 Ensembl:ENSBTAT00000011148
Uniprot:F1MZT2
Length = 781
Score = 95 (38.5 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 34/112 (30%), Positives = 59/112 (52%)
Query: 181 LLRLYAYW---AHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEAR 237
L R+ +W ++E+ +G ++ AR V+ER ++ +AW SYI+ E+ ++ AR
Sbjct: 229 LPRVNQFWYKYTYMEEMLG-NIAGARQVFERWMEWRPEE-QAWHSYINFELRYKEVDRAR 286
Query: 238 SIYKRCYSKRFTGTGSEDICHAWL---RFEREYGTLEDFDHSVQKVTPRLEE 286
+IY+R Y D+ + W+ RFE ++G F H+ +KV R E
Sbjct: 287 TIYER-YIHSLVLV-HPDVKN-WIKYARFEEKHGY---FAHA-RKVYERAVE 331
Score = 89 (36.4 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 29 YLKYEQSSGDPGRVQLLYERAI-TDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKN 87
Y ++E+S + R + +YERA+ D+ + LWL Y + K +V N R+++ RA
Sbjct: 171 YAQWEESLKEIQRARSIYERALDVDYR-NITLWLKYAEMEMKNRQV-NHARNIWDRAITT 228
Query: 88 CPWVGELW 95
P V + W
Sbjct: 229 LPRVNQFW 236
>UNIPROTKB|F1P3Q8 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000245 "spliceosomal complex assembly"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 OMA:KFTFAKI GeneTree:ENSGT00550000074931
EMBL:AADN02044253 EMBL:AADN02044254 IPI:IPI00599254
Ensembl:ENSGALT00000013732 Uniprot:F1P3Q8
Length = 704
Score = 92 (37.4 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 45/171 (26%), Positives = 73/171 (42%)
Query: 136 TRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSM 195
T I + LF G +E L+ L RE F R + ++ + +A LE +
Sbjct: 454 TSIGKCPKNKLFKGYIE--LELQL-RE-FDRCRKLYEKFLEFAPENCTSWIKFAELETIL 509
Query: 196 GKDMVSARGVWERLLKISGAMLEA----WQSYISMEIELDHINEARSIYKRCYSKRFTGT 251
G D+ AR ++E L IS L+ W+SYI EIE + + R++Y+R + T
Sbjct: 510 G-DIDRARAIYE--LAISQPRLDMPEVLWKSYIDFEIEQEEYEKTRNLYRRLLQR----T 562
Query: 252 GSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESKSLPES 302
+ ++ +FE G E Q + +R ++E L ES
Sbjct: 563 QHVKVWISFAQFELSAGKEESLSKCRQIYEEANKAMRNCEEKEERVMLLES 613
Score = 89 (36.4 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 29 YLKYEQSSGDPGRVQLLYERAI-TDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKN 87
Y ++E+S + R + +YERA+ D+ + LWL Y + K +V N R+++ RA
Sbjct: 103 YAQWEESLKEIQRARSIYERALDVDYR-NVTLWLKYAEMEMKNRQV-NHARNIWDRAITT 160
Query: 88 CPWVGELW 95
P V + W
Sbjct: 161 LPRVNQFW 168
Score = 82 (33.9 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 181 LLRLYAYW---AHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEAR 237
L R+ +W ++E+ +G ++ +R V+ER ++ +AW SYI+ E+ ++ AR
Sbjct: 161 LPRVNQFWYKYTYMEEMLG-NVAGSRQVFERWMEWQPEE-QAWHSYINFELRYKEVDRAR 218
Query: 238 SIY 240
+IY
Sbjct: 219 TIY 221
Score = 78 (32.5 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 10 EQISRQDLSDSEKFQQYMIY-LKYEQSSG--D--PGRVQLLYERAITDFPVSSDLWLDYT 64
++I +QD + F+ Y I+ K+ G D + + YE + P + D W DY
Sbjct: 297 DRIPKQDAQNL--FKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYL 354
Query: 65 QYLDKTLKVGNVVRDVYSRATKNCPWVGE 93
+ ++ VR+VY RA N P + E
Sbjct: 355 RLVESDADA-ETVREVYERAIANVPPIQE 382
Score = 73 (30.8 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 20/66 (30%), Positives = 34/66 (51%)
Query: 23 FQQYMIYLKY---EQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVV-- 77
++ ++LKY E + + +++RAIT P + W YT Y+++ L GNV
Sbjct: 128 YRNVTLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYT-YMEEML--GNVAGS 184
Query: 78 RDVYSR 83
R V+ R
Sbjct: 185 RQVFER 190
>WB|WBGene00019762 [details] [associations]
symbol:M03F8.3 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293 SMART:SM00386
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0018996
GO:GO:0040011 GO:GO:0000003 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972
OMA:KFTFAKI GeneTree:ENSGT00550000074931 EMBL:FO080495
RefSeq:NP_001122979.1 ProteinModelPortal:A9D4S6 SMR:A9D4S6
STRING:A9D4S6 PaxDb:A9D4S6 EnsemblMetazoa:M03F8.3b GeneID:178979
KEGG:cel:CELE_M03F8.3 UCSC:M03F8.3a CTD:178979 WormBase:M03F8.3b
InParanoid:A9D4S6 NextBio:903380 ArrayExpress:A9D4S6 Uniprot:A9D4S6
Length = 747
Score = 94 (38.1 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 45/188 (23%), Positives = 88/188 (46%)
Query: 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYK 241
++ + ++++E+ + +++ AR ++ER ++ +AWQ+YI+ E+ I+ ARS+Y+
Sbjct: 154 MQFWLKYSYMEEVI-ENIPGARQIFERWIEWEPPE-QAWQTYINFELRYKEIDRARSVYQ 211
Query: 242 RCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESKSLPE 301
R G ++ + +FE G + + + +K E + + + +L E
Sbjct: 212 RFLHVH--GINVQNWIK-YAKFEERNGYIGNARAAYEKAMEYFGEEDINETVLVAFALFE 268
Query: 302 SADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKK------VHD----KEKRQ 351
QKEH + G K D N+ ++ + KH Q KK + D K K Q
Sbjct: 269 ER-QKEHE-RARGIFKYGLD-NLPSNRTE-EIFKHYTQHEKKFGERVGIEDVIISKRKTQ 324
Query: 352 VQNLAEEN 359
+ + EEN
Sbjct: 325 YEKMVEEN 332
Score = 87 (35.7 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 29 YLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC 88
Y K+E+S G+ R + ++ERA+ S +WL Y + ++ K N R+V+ RA
Sbjct: 92 YGKWEESIGEIQRARSVFERALDVDHRSISIWLQYAE-MEMRCKQINHARNVFDRAITIM 150
Query: 89 PWVGELWV 96
P + W+
Sbjct: 151 PRAMQFWL 158
>MGI|MGI:1914127 [details] [associations]
symbol:Crnkl1 "Crn, crooked neck-like 1 (Drosophila)"
species:10090 "Mus musculus" [GO:0000245 "spliceosomal complex
assembly" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 SMART:SM00386 MGI:MGI:1914127 GO:GO:0016607
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0000245
eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972 OMA:KFTFAKI
GeneTree:ENSGT00550000074931 CTD:51340 HOVERGEN:HBG051046
EMBL:AK004749 EMBL:AK012962 EMBL:AK088882 EMBL:BC029187
IPI:IPI00132376 RefSeq:NP_080096.1 UniGene:Mm.248755
ProteinModelPortal:P63154 SMR:P63154 STRING:P63154
PhosphoSite:P63154 PaxDb:P63154 PRIDE:P63154
Ensembl:ENSMUST00000001818 GeneID:66877 KEGG:mmu:66877
InParanoid:P63154 OrthoDB:EOG4SJ5DC ChiTaRS:CRNKL1 NextBio:322905
Bgee:P63154 CleanEx:MM_CRNKL1 Genevestigator:P63154
GermOnline:ENSMUSG00000001767 Uniprot:P63154
Length = 690
Score = 90 (36.7 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 181 LLRLYAYW---AHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEAR 237
L R+ +W ++E+ +G ++ AR V+ER ++ +AW SYI+ E+ + AR
Sbjct: 145 LPRVNQFWYKYTYMEEMLG-NVAGARQVFERWMEWQPEE-QAWHSYINFELRYKEVERAR 202
Query: 238 SIYKR 242
+IY+R
Sbjct: 203 TIYER 207
Score = 89 (36.4 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 29 YLKYEQSSGDPGRVQLLYERAI-TDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKN 87
Y ++E+S + R + +YERA+ D+ + LWL Y + K +V N R+++ RA
Sbjct: 87 YAQWEESLKEIQRARSIYERALDVDYR-NITLWLKYAEMEMKNRQV-NHARNIWDRAITT 144
Query: 88 CPWVGELW 95
P V + W
Sbjct: 145 LPRVNQFW 152
>RGD|620507 [details] [associations]
symbol:Crnkl1 "crooked neck pre-mRNA splicing factor-like 1
(Drosophila)" species:10116 "Rattus norvegicus" [GO:0000245
"spliceosomal complex assembly" evidence=ISO;ISS] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 RGD:620507
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972
GeneTree:ENSGT00550000074931 CTD:51340 HOVERGEN:HBG051046
OrthoDB:EOG4SJ5DC EMBL:AF245018 EMBL:BC085718 IPI:IPI00327482
RefSeq:NP_446249.1 RefSeq:XP_003749628.1 UniGene:Rn.162694
ProteinModelPortal:P63155 SMR:P63155 STRING:P63155 PRIDE:P63155
Ensembl:ENSRNOT00000014632 GeneID:100910202 GeneID:116481
KEGG:rno:100910202 KEGG:rno:116481 UCSC:RGD:620507
InParanoid:P63155 NextBio:619051 Genevestigator:P63155
GermOnline:ENSRNOG00000040045 Uniprot:P63155
Length = 690
Score = 90 (36.7 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 181 LLRLYAYW---AHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEAR 237
L R+ +W ++E+ +G ++ AR V+ER ++ +AW SYI+ E+ + AR
Sbjct: 145 LPRVNQFWYKYTYMEEMLG-NVAGARQVFERWMEWQPEE-QAWHSYINFELRYKEVERAR 202
Query: 238 SIYKR 242
+IY+R
Sbjct: 203 TIYER 207
Score = 89 (36.4 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 29 YLKYEQSSGDPGRVQLLYERAI-TDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKN 87
Y ++E+S + R + +YERA+ D+ + LWL Y + K +V N R+++ RA
Sbjct: 87 YAQWEESLKEIQRARSIYERALDVDYR-NITLWLKYAEMEMKNRQV-NHARNIWDRAITT 144
Query: 88 CPWVGELW 95
P V + W
Sbjct: 145 LPRVNQFW 152
>ASPGD|ASPL0000053069 [details] [associations]
symbol:AN1259 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0005681 EMBL:AACD01000017
GO:GO:0007049 Gene3D:1.25.40.10 eggNOG:NOG327505 KO:K12869
RefSeq:XP_658863.1 STRING:Q5BDX1 GeneID:2877035 KEGG:ani:AN1259.2
HOGENOM:HOG000207972 OMA:KFTFAKI OrthoDB:EOG4NKG44 Uniprot:Q5BDX1
Length = 673
Score = 132 (51.5 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 77/354 (21%), Positives = 145/354 (40%)
Query: 1 MCNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD-- 58
+ R EEQ+ +++L + + + + + E+ SGDP RV+ +YERAI P S +
Sbjct: 303 LAKRRVQYEEQL-KENLRN---YDVWFDFARLEEQSGDPERVRDVYERAIAQIPPSQEKR 358
Query: 59 -------LWLDYTQYLDKTLKVGNVVRDVYSRATKNCPW----VGELWVXXXXXXXXXXX 107
LW+ Y + + K + R VY+ K P ++W+
Sbjct: 359 HWRRYIYLWIFYALWEEMEAKDIDRARQVYTECLKLIPHKKFTFAKVWLMKAQFEVRQLN 418
Query: 108 XXXXISTVFEKSLLCAFST-FEEYLDLFLTRIDGLRRRILFSGEVE-------GVLDYSL 159
T+ + +C F Y+DL + +R R L+ ++E + Y+
Sbjct: 419 LQAARKTLGQAIGMCPKDKLFRGYIDLERQLFEFVRCRTLYEKQIEWNPSNSQSWIQYAE 478
Query: 160 IR---ETFQRA-SDY-LSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG 214
+ + +RA + Y L D ++ + E G + R ++ERLL+ +
Sbjct: 479 LERGLDDTERARAIYELGIDQPTLDMPELVWKAYIDFEDDEG-EYERERQLYERLLQKTD 537
Query: 215 AMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFD 274
+ + W +Y EI + E +R S E A FER + ++ +
Sbjct: 538 HV-KVWINYARFEINVPDEEEEEEEEERPIS-------DEAKRRARAVFERAHRVFKEKE 589
Query: 275 HSVQKVTPRLEELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQ 328
++V E L +R+ + + PE D+ E + + +++RK D + YE+
Sbjct: 590 LKEERV----ELLNAWRAFEHTHGSPEDIDKIEKQMPRRVKKRRKLDDD-RYEE 638
Score = 91 (37.1 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 27/88 (30%), Positives = 45/88 (51%)
Query: 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKR 242
+L+ + ++E+++G ++ R V+ER + AW +YI +E + AR+I++R
Sbjct: 141 KLWYKYVYMEETLG-NIPGTRQVFERWMSWEPDE-GAWSAYIKLEKRYNEFERARAIFQR 198
Query: 243 CYSKRFTGTGSEDICHA-WLRFEREYGT 269
FT E W RFE EYGT
Sbjct: 199 -----FTIVHPEPRNWIKWARFEEEYGT 221
Score = 74 (31.1 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 22/91 (24%), Positives = 40/91 (43%)
Query: 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYT 64
R E+ + R ++ +M Y +E + R + ++ERA+ S LW+ Y
Sbjct: 58 RKEFEDYVRRNRIN----MNNWMRYAAWELEQKEFRRARSIFERALDVDSTSVPLWIRYI 113
Query: 65 QYLDKTLKVGNVVRDVYSRATKNCPWVGELW 95
+ + + N R++ RA P V +LW
Sbjct: 114 ESEMRNRNI-NHARNLLDRAVTILPRVDKLW 143
>UNIPROTKB|F1PYE9 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
OMA:KFTFAKI GeneTree:ENSGT00550000074931 EMBL:AAEX03013754
Ensembl:ENSCAFT00000008599 Uniprot:F1PYE9
Length = 797
Score = 91 (37.1 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 33/112 (29%), Positives = 57/112 (50%)
Query: 181 LLRLYAYW---AHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEAR 237
L R+ +W ++E+ +G ++ AR V+ER ++ +AW SYI+ E+ ++ AR
Sbjct: 250 LPRVNQFWYKYTYMEEMLG-NIAGARQVFERWMEWQPEE-QAWHSYINFELRYKEVDRAR 307
Query: 238 SIYKRCYSKRFTGTGSEDICHAWL---RFEREYGTLEDFDHSVQKVTPRLEE 286
+IY S D+ + W+ RFE ++G F H+ +KV R E
Sbjct: 308 TIYYFLNSPELVLV-HPDVKN-WIKYARFEEKHGY---FAHA-RKVYERAVE 353
Score = 89 (36.4 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 29 YLKYEQSSGDPGRVQLLYERAI-TDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKN 87
Y ++E+S + R + +YERA+ D+ + LWL Y + K +V N R+++ RA
Sbjct: 192 YAQWEESLKEIQRARSIYERALDVDYR-NITLWLKYAEMEMKNRQV-NHARNIWDRAITT 249
Query: 88 CPWVGELW 95
P V + W
Sbjct: 250 LPRVNQFW 257
>ASPGD|ASPL0000073559 [details] [associations]
symbol:AN10574 species:162425 "Emericella nidulans"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 EMBL:BN001303 ProteinModelPortal:C8VB25
EnsemblFungi:CADANIAT00005779 OMA:ERATRHC Uniprot:C8VB25
Length = 1290
Score = 135 (52.6 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 64/248 (25%), Positives = 106/248 (42%)
Query: 4 ARAHLEEQISRQDLSDSEKFQQYMI---YLKYEQSSGDPGR------VQLLYERAITDFP 54
AR LE ++ R ++ Q++ I Y+++E + R + +Y+RA+ F
Sbjct: 443 AREDLEIRL-RNAAESGDRAQEWAIFGEYIEWELNRNRRRRNTNFELINAIYQRAVLRFQ 501
Query: 55 VSSDLWLDYTQYL-DKTLKVGNVVRDVYS---RATKNCPWVGELWVXXXXXXXXXXXXXX 110
+++W DY +L D+++ GN S RAT++CP G LW
Sbjct: 502 TDANIWEDYIMFLIDESMH-GNAHPTTISALDRATRHCPGSGTLWSQYLLSSEREGQPFT 560
Query: 111 XISTVFEKSL---LCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSL--IRETFQ 165
I+ + K+ L EE L + LRRR S + LD + IR +
Sbjct: 561 KIADIKHKATSTGLLDVGGMEEVLKVHTAWCSYLRRRAFLSEATDEDLDVAEVGIRSAIE 620
Query: 166 RASDYLSEQM--KNTDG--LLRLYA-YWAHLEQSMGKDMVSARGVWERLLKISGAMLEAW 220
+ L E+ ++ +G L RL Y +L +S D SAR ++ L+ G E W
Sbjct: 621 SVQE-LGEKKYGRSYEGDPLFRLERIYIRYLSESGSWD--SARETFKGLMGRRGNSYEFW 677
Query: 221 QSYISMEI 228
+Y E+
Sbjct: 678 LTYYHWEL 685
>UNIPROTKB|I3LL94 [details] [associations]
symbol:I3LL94 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016529 "sarcoplasmic reticulum" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0005102
"receptor binding" evidence=IEA] InterPro:IPR010798 GO:GO:0016021
GO:GO:0016529 PANTHER:PTHR14106 GeneTree:ENSGT00510000049207
EMBL:CU928609 Ensembl:ENSSSCT00000029492 OMA:CARNIFL Uniprot:I3LL94
Length = 206
Score = 120 (47.3 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 38/148 (25%), Positives = 70/148 (47%)
Query: 264 EREYGTLEDFDHSVQKVTPRLEELRLFRSQQESKSLPESADQKE--HSVKKTGREKRKSD 321
E + G +ED D + P +++ + + + E + PE Q + H K +EK K +
Sbjct: 44 EDDEGGVEDTDKGEIEEPPVKKKVEIHKEKTEKQEKPERKTQTKVTHREKDKAKEKEKPE 103
Query: 322 SNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEENEGRETKQTVEEQPKKQP--IKD 379
++++ K++K P+ +++K + + AEE +E K +E+ K+ IKD
Sbjct: 104 KKATHKEKIEKKEK--PETKTVAKEEKKTKTKEKAEEKSKKEVKGGKQEKVKQTAAKIKD 161
Query: 380 AV-PG-RTKGFTDECTAFLSNINLKASH 405
A P + KG ++ A LS K H
Sbjct: 162 AQKPSPKPKGKDEKDAAALSKHEQKGKH 189
>ZFIN|ZDB-GENE-040426-694 [details] [associations]
symbol:crnkl1 "crooked neck pre-mRNA splicing
factor-like 1 (Drosophila)" species:7955 "Danio rerio" [GO:0005622
"intracellular" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293 SMART:SM00386
ZFIN:ZDB-GENE-040426-694 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 GeneTree:ENSGT00550000074931 EMBL:CABZ01008082
EMBL:CABZ01008083 EMBL:CABZ01008084 IPI:IPI00932828
Ensembl:ENSDART00000112689 ArrayExpress:E7FGM7 Bgee:E7FGM7
Uniprot:E7FGM7
Length = 754
Score = 90 (36.7 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 53/206 (25%), Positives = 85/206 (41%)
Query: 136 TRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSM 195
T I + LF G +E L+ L RE F R + ++ + + +A LE +
Sbjct: 437 TAIGKCPKNKLFKGYIE--LELQL-RE-FDRCRKLYEKYLEFSPENCTTWIKFAELETIL 492
Query: 196 GKDMVSARGVWERLLKISGAMLEA----WQSYISMEIELDHINEARSIYKRCYSKRFTGT 251
G D +R ++E L I L+ W+SYI EIE + + R +YKR + T
Sbjct: 493 G-DTDRSRAIFE--LAIGQPRLDMPEVLWKSYIDFEIEQEEYDNTRGLYKRLLQR----T 545
Query: 252 GSEDICHAWLRFEREYGT----------LEDFDHSVQKVTPRLEELRLFRSQQESKSLPE 301
+ ++ +FE T E+ + +Q + E L L S ++ +
Sbjct: 546 QHVKVWISYAQFELSIDTEDRVQRCRQVYEEANKGMQNCEEKEERLMLLESWRDYEEEFG 605
Query: 302 SADQKEHSVKKTGREKRKSDSNISYE 327
S KE V+K EK K I+ E
Sbjct: 606 SFTHKER-VRKLLPEKVKKRRKITAE 630
Score = 84 (34.6 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 29 YLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC 88
Y ++E+S + R + +YERA+ + LWL Y + K +V N R+++ RA
Sbjct: 86 YAQWEESLQEVQRSRSIYERALDVDHRNITLWLKYAEMEMKNRQV-NHARNIWDRAITIL 144
Query: 89 PWVGELW 95
P V + W
Sbjct: 145 PRVNQFW 151
Score = 75 (31.5 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 24/89 (26%), Positives = 41/89 (46%)
Query: 10 EQISRQDLSDSEKFQQYMIYLK-YEQSSG--DP--GRVQLLYERAITDFPVSSDLWLDYT 64
++I +Q E F+ Y ++ K + G D + + YE + P + D W DY
Sbjct: 280 DRIPKQQAQ--ELFKNYTVFEKRFGDRRGIEDVIVSKRRFQYEEEVKANPHNYDAWFDYL 337
Query: 65 QYLDKTLKVGNVVRDVYSRATKNCPWVGE 93
+ ++ + VR+VY RA N P + E
Sbjct: 338 RLVESDADA-DTVREVYERAIANIPPIQE 365
Score = 74 (31.1 bits), Expect = 0.00095, Sum P(2) = 0.00095
Identities = 23/94 (24%), Positives = 40/94 (42%)
Query: 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD------ 58
R EE++ ++ + + YL+ +S D V+ +YERAI + P +
Sbjct: 316 RFQYEEEVK----ANPHNYDAWFDYLRLVESDADADTVREVYERAIANIPPIQEKRHWRR 371
Query: 59 ---LWLDYTQYLDKTLKVGNVVRDVYSRATKNCP 89
LW++Y Y + +K R VY + P
Sbjct: 372 YIYLWINYALYEELEVKDPERTRQVYKACLELIP 405
>FB|FBgn0000377 [details] [associations]
symbol:crn "crooked neck" species:7227 "Drosophila
melanogaster" [GO:0007443 "Malpighian tubule morphogenesis"
evidence=IMP] [GO:0007417 "central nervous system development"
evidence=NAS] [GO:0005634 "nucleus" evidence=IC;NAS] [GO:0007422
"peripheral nervous system development" evidence=NAS] [GO:0048663
"neuron fate commitment" evidence=NAS] [GO:0007405 "neuroblast
proliferation" evidence=NAS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007438 "oenocyte development"
evidence=IMP] [GO:0008347 "glial cell migration" evidence=IMP]
[GO:0008366 "axon ensheathment" evidence=IMP] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0051298 "centrosome
duplication" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
[GO:0072686 "mitotic spindle" evidence=IDA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 GO:GO:0005813
GO:GO:0051298 GO:GO:0016607 EMBL:AE014298 GO:GO:0007438
Gene3D:1.25.40.10 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
GO:GO:0008347 GO:GO:0072686 GO:GO:0007443 GO:GO:0000381
GO:GO:0008366 eggNOG:NOG327505 KO:K12869 OMA:KFTFAKI
GeneTree:ENSGT00550000074931 EMBL:X58374 EMBL:AL009195
EMBL:AY051666 PIR:T13427 RefSeq:NP_477118.1 UniGene:Dm.3140
ProteinModelPortal:P17886 SMR:P17886 DIP:DIP-17429N IntAct:P17886
MINT:MINT-282072 STRING:P17886 PaxDb:P17886
EnsemblMetazoa:FBtr0070418 GeneID:31208 KEGG:dme:Dmel_CG3193
CTD:12935 FlyBase:FBgn0000377 HOGENOM:HOG000264173
InParanoid:P17886 OrthoDB:EOG4J9KDW PhylomeDB:P17886
GenomeRNAi:31208 NextBio:772455 Bgee:P17886 GermOnline:CG3193
Uniprot:P17886
Length = 702
Score = 92 (37.4 bits), Expect = 9.5e-05, Sum P(2) = 9.5e-05
Identities = 29/102 (28%), Positives = 53/102 (51%)
Query: 185 YAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCY 244
Y Y ++E+ + +++ AR V+ER ++ +AWQ+Y++ E+ I+ AR IY+R
Sbjct: 148 YKY-TYMEEML-ENVAGARQVFERWMEWQPEE-QAWQTYVNFELRYKEIDRAREIYER-- 202
Query: 245 SKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEE 286
F D+ + W++F R + F H ++V R E
Sbjct: 203 ---FVYV-HPDVKN-WIKFAR-FEESHGFIHGSRRVFERAVE 238
Score = 81 (33.6 bits), Expect = 9.5e-05, Sum P(2) = 9.5e-05
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 29 YLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC 88
Y ++E+ + R + ++ERA+ + + LWL Y + K +V N R+++ RA
Sbjct: 82 YAQWEEQQQEIQRARSIWERALDNEHRNVTLWLKYAEMEMKNKQV-NHARNLWDRAVTIM 140
Query: 89 PWVGELW 95
P V + W
Sbjct: 141 PRVNQFW 147
>UNIPROTKB|Q5JY65 [details] [associations]
symbol:CRNKL1 "Crooked neck-like protein 1" species:9606
"Homo sapiens" [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
HOGENOM:HOG000207972 EMBL:AL035454 IPI:IPI00219317
UniGene:Hs.171342 HGNC:HGNC:15762 HOVERGEN:HBG051046
OrthoDB:EOG4SJ5DC SMR:Q5JY65 IntAct:Q5JY65 Ensembl:ENST00000377327
Uniprot:Q5JY65
Length = 836
Score = 96 (38.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 28/92 (30%), Positives = 48/92 (52%)
Query: 152 EGVLDYSLI-RETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLL 210
E + DY L R+TF+ D + + ++ YA W E+S+ K++ AR ++ER L
Sbjct: 206 EELNDYKLRKRKTFE---DNIRKNRTVISNWIK-YAQW---EESL-KEIQRARSIYERAL 257
Query: 211 KISGAMLEAWQSYISMEIELDHINEARSIYKR 242
+ + W Y ME++ +N AR+I+ R
Sbjct: 258 DVDYRNITLWLKYAEMEMKNRQVNHARNIWDR 289
Score = 78 (32.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 37/179 (20%), Positives = 82/179 (45%)
Query: 223 YISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHS--VQKV 280
YI +E++L + R +Y++ F G E+ C +W++F L D D + + ++
Sbjct: 600 YIELELQLREFDRCRKLYEK-----FLEFGPEN-CTSWIKFAELETILGDIDRARAIYEL 653
Query: 281 T---PRLEELR-LFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKH 336
PRL+ L++S + + E ++ + ++ + + IS+ Q K
Sbjct: 654 AISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISFAQFELSSGKE 713
Query: 337 AP-QKPKKVHDKEKRQVQNLAEENEGR----ETKQTVEEQ----PKKQPIKDAVPGRTK 386
K ++++++ + ++N EE E R E+ ++ EE+ K+ + +P + K
Sbjct: 714 GSLTKCRQIYEEANKTMRN-CEEKEERLMLLESWRSFEEEFGTASDKERVDKLMPEKVK 771
>UNIPROTKB|Q9BZJ0 [details] [associations]
symbol:CRNKL1 "Crooked neck-like protein 1" species:9606
"Homo sapiens" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0000245 "spliceosomal complex
assembly" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IC] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
EMBL:AF318303 GO:GO:0005737 GO:GO:0016607 GO:GO:0003723
Gene3D:1.25.40.10 GO:GO:0071013 GO:GO:0000245 eggNOG:NOG327505
KO:K12869 OMA:KFTFAKI EMBL:AF255443 EMBL:AF318302 EMBL:AF318304
EMBL:AF318305 EMBL:AF111802 EMBL:AK023246 EMBL:AK023728
EMBL:AK292799 EMBL:AL035454 EMBL:AK022908 IPI:IPI00177437
IPI:IPI00219317 IPI:IPI00219318 IPI:IPI00219320 IPI:IPI01011870
RefSeq:NP_057736.4 UniGene:Hs.171342 ProteinModelPortal:Q9BZJ0
SMR:Q9BZJ0 IntAct:Q9BZJ0 STRING:Q9BZJ0 PhosphoSite:Q9BZJ0
DMDM:147744555 PaxDb:Q9BZJ0 PRIDE:Q9BZJ0 DNASU:51340
Ensembl:ENST00000377340 Ensembl:ENST00000490910
Ensembl:ENST00000496549 Ensembl:ENST00000536226 GeneID:51340
KEGG:hsa:51340 UCSC:uc002wrs.3 CTD:51340 GeneCards:GC20M019963
H-InvDB:HIX0015678 HGNC:HGNC:15762 MIM:610952 neXtProt:NX_Q9BZJ0
PharmGKB:PA26886 HOVERGEN:HBG051046 InParanoid:Q9BZJ0
GenomeRNAi:51340 NextBio:54782 ArrayExpress:Q9BZJ0 Bgee:Q9BZJ0
Genevestigator:Q9BZJ0 GermOnline:ENSG00000101343 Uniprot:Q9BZJ0
Length = 848
Score = 96 (38.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 28/92 (30%), Positives = 48/92 (52%)
Query: 152 EGVLDYSLI-RETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLL 210
E + DY L R+TF+ D + + ++ YA W E+S+ K++ AR ++ER L
Sbjct: 218 EELNDYKLRKRKTFE---DNIRKNRTVISNWIK-YAQW---EESL-KEIQRARSIYERAL 269
Query: 211 KISGAMLEAWQSYISMEIELDHINEARSIYKR 242
+ + W Y ME++ +N AR+I+ R
Sbjct: 270 DVDYRNITLWLKYAEMEMKNRQVNHARNIWDR 301
Score = 78 (32.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 37/179 (20%), Positives = 82/179 (45%)
Query: 223 YISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHS--VQKV 280
YI +E++L + R +Y++ F G E+ C +W++F L D D + + ++
Sbjct: 612 YIELELQLREFDRCRKLYEK-----FLEFGPEN-CTSWIKFAELETILGDIDRARAIYEL 665
Query: 281 T---PRLEELR-LFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKH 336
PRL+ L++S + + E ++ + ++ + + IS+ Q K
Sbjct: 666 AISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISFAQFELSSGKE 725
Query: 337 AP-QKPKKVHDKEKRQVQNLAEENEGR----ETKQTVEEQ----PKKQPIKDAVPGRTK 386
K ++++++ + ++N EE E R E+ ++ EE+ K+ + +P + K
Sbjct: 726 GSLTKCRQIYEEANKTMRN-CEEKEERLMLLESWRSFEEEFGTASDKERVDKLMPEKVK 783
>POMBASE|SPBC31F10.11c [details] [associations]
symbol:cwf4 "complexed with Cdc5 protein Cwf4"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IC]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 SMART:SM00386 PomBase:SPBC31F10.11c EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0007049
Gene3D:1.25.40.10 GO:GO:0045292 eggNOG:NOG327505 KO:K12869
HOGENOM:HOG000207972 OMA:KFTFAKI OrthoDB:EOG4NKG44 EMBL:AF254353
PIR:T40214 RefSeq:NP_596573.1 ProteinModelPortal:P87312
IntAct:P87312 STRING:P87312 EnsemblFungi:SPBC31F10.11c.1
GeneID:2540328 KEGG:spo:SPBC31F10.11c NextBio:20801457
Uniprot:P87312
Length = 674
Score = 82 (33.9 bits), Expect = 0.00036, Sum P(3) = 0.00036
Identities = 25/91 (27%), Positives = 41/91 (45%)
Query: 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYT 64
R E+ I R L+ +M Y ++E + R + ++ERA+ LWL Y
Sbjct: 56 RKEFEDAIRRNRLA----MGHWMRYGQWELDQKEFARARSVFERALDVDSTYIPLWLKYI 111
Query: 65 QYLDKTLKVGNVVRDVYSRATKNCPWVGELW 95
+ K + N R+++ RA P V +LW
Sbjct: 112 ECEMKNRNI-NHARNLFDRAVTQLPRVDKLW 141
Score = 72 (30.4 bits), Expect = 0.00036, Sum P(3) = 0.00036
Identities = 28/124 (22%), Positives = 52/124 (41%)
Query: 133 LFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASD---YLSEQMKNTDGLLRLYAYWA 189
++L ID L + L + + ++ ++RA Y + M + + LY +
Sbjct: 226 VYLAAIDALGQEFLNERFFIAFAKFEIRQKEYERARTIFKYAIDFMPRSKSM-ELYKEYT 284
Query: 190 HLEQSMGKDM-VSA------RGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKR 242
H E+ G + V + R +E+LLK S + W + +E IN R Y++
Sbjct: 285 HFEKQFGDHLGVESTVLDKRRLQYEKLLKDSPYDYDTWLDLLKLEESAGDINTIRETYEK 344
Query: 243 CYSK 246
+K
Sbjct: 345 AIAK 348
Score = 53 (23.7 bits), Expect = 0.00036, Sum P(3) = 0.00036
Identities = 26/107 (24%), Positives = 48/107 (44%)
Query: 236 ARSIYKRCYSK-RFTGTGSEDIC--HAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRS 292
AR++++ + R G E + AW +FE +GT ED V + P++ + R
Sbjct: 572 ARNVFENALAHLRQQGLKEERVVLLEAWKQFEAMHGT-EDTRKHVSSLMPQVVKKR---R 627
Query: 293 QQESKSLPESADQK-EHSVKKTGREKRKS-DSNISYEQSPAKRQKHA 337
+ E S E D + G + RK + + +++ AK++ A
Sbjct: 628 RLEDGSFEEYLDYLFPDTATDQGDKMRKMLELSRKWKEEMAKKKLEA 674
>MGI|MGI:3525069 [details] [associations]
symbol:AY512931 "cDNA sequence AY512931" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] MGI:MGI:3525069 EMBL:AY512931 IPI:IPI00460801
UniGene:Mm.334512 PRIDE:Q6R5F1 Genevestigator:Q6R5F1 Uniprot:Q6R5F1
Length = 128
Score = 95 (38.5 bits), Expect = 0.00050, P = 0.00050
Identities = 30/101 (29%), Positives = 50/101 (49%)
Query: 288 RLFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNISY---EQSPAKRQKHAPQKPKKV 344
R + QE ++ PES+ K + +G ++S S+I+Y QS + R++ Q+ +K
Sbjct: 17 RFLATGQERRNKPESSAAKALLLTSSGARVQESKSSIAYIFRSQSKSAREQEPEQEREKK 76
Query: 345 HDKEKRQVQNLAEENEGRETKQTVEEQPKKQ---PIKDAVP 382
+KE+ Q E RE KQ E + + Q P K+ P
Sbjct: 77 QEKEQEQ-----ESKSKRERKQEQEREKEWQNPVPFKENYP 112
>UNIPROTKB|E1C8G8 [details] [associations]
symbol:PRPF39 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 GO:GO:0005634 GO:GO:0006396
Gene3D:1.25.40.10 GeneTree:ENSGT00390000005033 OMA:GWVYLLQ
EMBL:AADN02004089 IPI:IPI00598251 Ensembl:ENSGALT00000020376
Uniprot:E1C8G8
Length = 628
Score = 102 (41.0 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 36/121 (29%), Positives = 52/121 (42%)
Query: 9 EEQISRQ--DLSDSEKFQ--QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYT 64
EE I R + EK Q + YL++E +G RV +L+ER + + D W+ Y
Sbjct: 295 EEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISCALYEDFWIKYA 354
Query: 65 QYLDKTLKVGNVVRDVYSRATK----NCPWVGELWVXXXXXXXXXXXXXXXISTVFEKSL 120
+Y++ G VR VYSRA P V LW + T FE+ +
Sbjct: 355 KYMENHSIEG--VRHVYSRACTIHLPKKPMVHMLWAAFEEQQGNIDEARRILKT-FEECI 411
Query: 121 L 121
L
Sbjct: 412 L 412
Score = 62 (26.9 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 33/164 (20%), Positives = 66/164 (40%)
Query: 165 QRASDYLSEQMKNTDGLLRLYAYWAHLEQSM---GKDMVSARGVWERLLKISGAMLEAWQ 221
+ A L E ++N + Y L + + K++ AR V ++I + +
Sbjct: 432 EEAERLLEEAVRNAKSVSESSFYAIKLARHLFKVQKNLPKARKVLSDAIEIDKENTKLYL 491
Query: 222 SYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVT 281
+ + ME D +I C+ K G+ S + + + + E+ LEDF V K+
Sbjct: 492 NLLEMEYCGDLTQNEENILS-CFDKAVNGSLSIKMRVTFSQRKVEF--LEDFGSDVNKLL 548
Query: 282 PRLEELR-LFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNI 324
+E + L + Q K E+ ++ K E+ + + +
Sbjct: 549 DAYDEHQALLKEQDTLKRRAENGSEEPDEKKMLTDEQTMASAQM 592
>UNIPROTKB|J9P5Z1 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
GeneTree:ENSGT00550000074931 EMBL:AAEX03013754
Ensembl:ENSCAFT00000047479 Uniprot:J9P5Z1
Length = 728
Score = 92 (37.4 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 60/256 (23%), Positives = 111/256 (43%)
Query: 136 TRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSM 195
T I + LF G +E L+ L RE F R + ++ + +A LE +
Sbjct: 478 TSIGKCPKNKLFKGYIE--LELQL-RE-FDRCRKLYEKFLEFGPENCTSWIKFAELETIL 533
Query: 196 GKDMVSARGVWERLLKISGAMLEA----WQSYISMEIELDHINEARSIYKRCYSKRFTGT 251
G D+ AR ++E L IS L+ W+SYI EIE + R++Y+R + T
Sbjct: 534 G-DIERARAIYE--LAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQR----T 586
Query: 252 GSEDICHAWLRFE---REYGTL-------EDFDHSVQKVTPRLEELRLFRSQQESKSLPE 301
+ ++ +FE R+ G+L E+ + +++ + E L L S + +
Sbjct: 587 QHVKVWISFAQFELSSRKEGSLAKCRQIYEEANKTMRNCEEKEERLMLLESWRSFEDEFG 646
Query: 302 SADQKEHSVKKTGREKRKSDSNISYEQ-SPAKRQKHAPQK-PKKVHDKEKRQVQNLAEE- 358
+ KE V K EK K + + S A +++ P+ ++ ++ +A+
Sbjct: 647 TVSDKER-VDKLMPEKVKKRRKVQADDGSDAGWEEYYDYIFPEDAANQPNLKLLAMAKLW 705
Query: 359 NEGRETKQTVEEQPKK 374
+ ++ K+ E+ P K
Sbjct: 706 KKQQQEKEAAEQDPDK 721
Score = 72 (30.4 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 19/66 (28%), Positives = 34/66 (51%)
Query: 23 FQQYMIYLKY---EQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVV-- 77
++ ++LKY E + + +++RAIT P + W YT Y+++ L GN+
Sbjct: 153 YRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYT-YMEEML--GNIAGA 209
Query: 78 RDVYSR 83
R V+ R
Sbjct: 210 RQVFER 215
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.131 0.383 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 406 391 0.00094 117 3 11 22 0.42 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 36
No. of states in DFA: 616 (65 KB)
Total size of DFA: 263 KB (2139 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 46.80u 0.14s 46.94t Elapsed: 00:00:03
Total cpu time: 46.81u 0.14s 46.95t Elapsed: 00:00:03
Start: Sat May 11 03:08:43 2013 End: Sat May 11 03:08:46 2013