BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015472
         (406 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2OOE|A Chain A, Crystal Structure Of Hat Domain Of Murine Cstf-77
          Length = 530

 Score = 34.7 bits (78), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 106/266 (39%), Gaps = 30/266 (11%)

Query: 41  RVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVXXXX 100
           RV   YE+ +       D+W +  QYL+++ K+          A K     G++      
Sbjct: 256 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL---------LAEK-----GDMNNAKLF 301

Query: 101 XXXXXXXXXXXISTVFEKSLLC--AFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYS 158
                      IST+ +K++L   A++ +EE   +   ++  +  R+L   +++  L Y 
Sbjct: 302 SDEAANIYERAISTLLKKNMLLYFAYADYEE-SRMKYEKVHSIYNRLLAIEDIDPTLVYI 360

Query: 159 LIRETFQRASDYLSEQM----KNTDGLLR--LYAYWAHLEQSMGKDMVSARGVWERLLKI 212
              +  +RA    S +M       D   R  +Y   A +E    KD   A  ++E  LK 
Sbjct: 361 QYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK 420

Query: 213 SGAMLEAWQSYISMEIELDHINEARSIYKRCY-SKRFTGTGSEDICHAWLRFEREYGTLE 271
            G + E   +YI     L+  N  R +++R   S       S +I   +L FE   G L 
Sbjct: 421 YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 480

Query: 272 DFDHSVQKVTPRLEELRLFRSQQESK 297
               S+ KV  R      FR + E K
Sbjct: 481 ----SILKVEKR--RFTAFREEYEGK 500


>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin
          Length = 939

 Score = 31.2 bits (69), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 6/104 (5%)

Query: 199 MVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSED-IC 257
           MV+A G  +RL ++  A+LE + SY + E   D + +A+S Y +       G   E  I 
Sbjct: 580 MVNANGYTQRLPQLFQALLEGYFSYTATE---DQLEQAKSWYNQMMDSAEKGKAFEQAIM 636

Query: 258 HAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESKSLPE 301
            A +  +  Y + ++    +  +T  L+E+  +R   +S + PE
Sbjct: 637 PAQMLSQVPYFSRDERRKILPSIT--LKEVLAYRDALKSGARPE 678


>pdb|2OND|A Chain A, Crystal Structure Of The Hat-C Domain Of Murine Cstf-77
 pdb|2OND|B Chain B, Crystal Structure Of The Hat-C Domain Of Murine Cstf-77
          Length = 308

 Score = 28.1 bits (61), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 106/284 (37%), Gaps = 66/284 (23%)

Query: 41  RVQLLYERAITDFPVSSDLWLDYTQYLDKTLKV-------------GNVVRDVYSRATKN 87
           RV   YE+ +       D+W +  QYL+++ K+              +   ++Y RA   
Sbjct: 34  RVXFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDXNNAKLFSDEAANIYERA--- 90

Query: 88  CPWVGELWVXXXXXXXXXXXXXXXISTVFEKSLLC--AFSTFEEYLDLFLTRIDGLRRRI 145
                                   IST+ +K+ L   A++ +EE    +  ++  +  R+
Sbjct: 91  ------------------------ISTLLKKNXLLYFAYADYEESRXKY-EKVHSIYNRL 125

Query: 146 LFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLR-----------LYAYWAHLEQS 194
           L   +++  L Y    +  +RA     E +K+   + +           +Y   A  E  
Sbjct: 126 LAIEDIDPTLVYIQYXKFARRA-----EGIKSGRXIFKKAREDARTRHHVYVTAALXEYY 180

Query: 195 MGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCY-SKRFTGTGS 253
             KD   A  ++E  LK  G + E   +YI     L+  N  R +++R   S       S
Sbjct: 181 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 240

Query: 254 EDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESK 297
            +I   +L FE   G L     S+ KV  R      FR + E K
Sbjct: 241 GEIWARFLAFESNIGDLA----SILKVEKR--RFTAFREEYEGK 278


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.131    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,591,293
Number of Sequences: 62578
Number of extensions: 459473
Number of successful extensions: 1019
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1005
Number of HSP's gapped (non-prelim): 32
length of query: 406
length of database: 14,973,337
effective HSP length: 101
effective length of query: 305
effective length of database: 8,652,959
effective search space: 2639152495
effective search space used: 2639152495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)