BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015472
(406 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q15020|SART3_HUMAN Squamous cell carcinoma antigen recognized by T-cells 3 OS=Homo
sapiens GN=SART3 PE=1 SV=1
Length = 963
Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/373 (30%), Positives = 192/373 (51%), Gaps = 31/373 (8%)
Query: 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVV 77
+++ + +Y Y+ +E GDP R+QL++ERA+ + + DLW+ Y+QYLD+ LKV ++V
Sbjct: 305 AEAPRLAEYQAYIDFEMKIGDPARIQLIFERALVENCLVPDLWIRYSQYLDRQLKVKDLV 364
Query: 78 RDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTR 137
V++RA +NCPW LW R LL++ER + IS FEK+L F +Y++++
Sbjct: 365 LSVHNRAIRNCPWTVALWSRYLLAMERHGVDHQVISVTFEKALNAGFIQATDYVEIWQAY 424
Query: 138 IDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQM-----KNTDGLLRLYAYWAHLE 192
+D LRRR+ F + L+ +R F RA +YL +++ ++ D + WA +E
Sbjct: 425 LDYLRRRVDFKQDSSKELEE--LRAAFTRALEYLKQEVEERFNESGDPSCVIMQNWARIE 482
Query: 193 QSMGKDMVSARGVWERLLKISGA-MLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGT 251
+ +M AR +W+ ++ A W Y ++E R R + T
Sbjct: 483 ARLCNNMQKARELWDSIMTRGNAKYANMWLEYYNLERAHGDTQHCRKALHRAV--QCTSD 540
Query: 252 GSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESKSLPESADQKEHSVK 311
E +C L ER G+LED+D +VQK RL + ++Q K+ + A + +
Sbjct: 541 YPEHVCEVLLTMERTEGSLEDWDIAVQKTETRLARV----NEQRMKAAEKEAALVQQEEE 596
Query: 312 KTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEENEGRETKQTVEEQ 371
K + KR A+ +K A +K KK+ EKR A+E++ +E EEQ
Sbjct: 597 KAEQRKR------------ARAEKKALKKKKKIRGPEKRG----ADEDDEKEWGDDEEEQ 640
Query: 372 P-KKQPIKDAVPG 383
P K++ +++++P
Sbjct: 641 PSKRRRVENSIPA 653
>sp|Q5REG1|SART3_PONAB Squamous cell carcinoma antigen recognized by T-cells 3 OS=Pongo
abelii GN=SART3 PE=2 SV=1
Length = 981
Score = 160 bits (406), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/373 (30%), Positives = 192/373 (51%), Gaps = 31/373 (8%)
Query: 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVV 77
+++ + +Y Y+ +E GDP R+QL++ERA+ + + DLW+ Y+QYLD+ LKV ++V
Sbjct: 323 AEAPRLAEYQAYIDFEMKIGDPARIQLIFERALVENCLVPDLWIRYSQYLDRQLKVKDLV 382
Query: 78 RDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTR 137
V++RA +NCPW LW R LL++ER + IS FEK+L F +Y++++
Sbjct: 383 LSVHNRAIRNCPWTVALWSRYLLAMERHGVDHQVISVTFEKALNAGFIQATDYVEIWQAY 442
Query: 138 IDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQM-----KNTDGLLRLYAYWAHLE 192
+D LRRR+ F + L+ +R F RA +YL +++ ++ D + WA +E
Sbjct: 443 LDYLRRRVDFKQDSSKELEE--LRAAFTRALEYLKQEVEERFNESGDPSCVIMQNWARIE 500
Query: 193 QSMGKDMVSARGVWERLLKISGA-MLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGT 251
+ +M AR +W+ ++ A W Y ++E R R + T
Sbjct: 501 ARLCNNMQKARELWDSIMTRGNAKYANMWLEYYNLERAHGDTQHCRKALHRAV--QCTSD 558
Query: 252 GSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESKSLPESADQKEHSVK 311
E +C L ER G+LED+D +VQK RL + ++Q K+ + A + +
Sbjct: 559 YPEHVCEVLLTMERTEGSLEDWDIAVQKTETRLARV----NEQRMKAAEKEAALVQQEEE 614
Query: 312 KTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEENEGRETKQTVEEQ 371
K + KR A+ +K A +K KK+ EKR A+E++ +E EEQ
Sbjct: 615 KAEQRKR------------ARAEKKALKKKKKIRGPEKRG----ADEDDEKEWGDDEEEQ 658
Query: 372 P-KKQPIKDAVPG 383
P K++ +++++P
Sbjct: 659 PSKRRRVENSIPA 671
>sp|Q9JLI8|SART3_MOUSE Squamous cell carcinoma antigen recognized by T-cells 3 OS=Mus
musculus GN=Sart3 PE=2 SV=1
Length = 962
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 144/273 (52%), Gaps = 10/273 (3%)
Query: 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVV 77
+++ + +Y Y+ +E GDP R+QL++ERA+ + + DLW+ Y+QYLD+ LKV ++V
Sbjct: 306 AEAPRLAEYQAYIDFEMKIGDPARIQLIFERALVENCLVPDLWIRYSQYLDRQLKVKDLV 365
Query: 78 RDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTR 137
V+SRA +NCPW LW R LL++ER + IS FE +L F +Y++++
Sbjct: 366 LSVHSRAVRNCPWTVALWSRYLLAMERHGLDHQTISATFENALSAGFIQATDYVEIWQVY 425
Query: 138 IDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQM-----KNTDGLLRLYAYWAHLE 192
+D LRRR+ F + L+ +R F RA +YL +++ ++ D + WA +E
Sbjct: 426 LDYLRRRVDFRQDSSKELEE--LRSMFTRALEYLQQEVEERFSESGDPSCLIMQSWARVE 483
Query: 193 QSMGKDMVSARGVWERLLKISGA-MLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGT 251
+ +M AR +W+ ++ A W Y ++E R R + T
Sbjct: 484 ARLCNNMQKARELWDSIMTRGNAKYANMWLEYYNLERAHGDTQHCRKALHRAV--QCTSD 541
Query: 252 GSEDICHAWLRFEREYGTLEDFDHSVQKVTPRL 284
E +C L ER GTLED+D ++QK RL
Sbjct: 542 YPEHVCEVLLTMERTEGTLEDWDLAIQKTETRL 574
>sp|Q9USY2|YOW4_SCHPO Uncharacterized RNA-binding protein C1861.04c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC1861.04c PE=4 SV=1
Length = 1014
Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 15/174 (8%)
Query: 18 SDSEKFQQYMIYLKYE--QSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGN 75
S + + YM + E +S+ + + LYERAI +P+ +LWL YT +L K +
Sbjct: 265 SANHSLEAYMDLINDESRRSTAELQYITTLYERAIVLYPLIPELWLQYTAWLSKVDFSSS 324
Query: 76 VVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS----TFEEYL 131
V RAT+NC W+G +W L + S AS S V E+ C S F+E +
Sbjct: 325 QASSVAERATRNCSWIGRIWSIKLTYMTLSGAS---TSAVCEEKDRCLNSNLLVNFDEVI 381
Query: 132 DLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNT-DGLLRL 184
D F G + L+ E ++ + DYL + K + D +R+
Sbjct: 382 DFF----SGFLKACLYLSSNEDK-PQEFLKHQIHKVEDYLRKNHKGSKDARMRI 430
>sp|Q4PB37|CLF1_USTMA Pre-mRNA-splicing factor CLF1 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=CLF1 PE=3 SV=1
Length = 781
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 126/284 (44%), Gaps = 46/284 (16%)
Query: 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYT 64
R+ E+++ R L+ S ++ Y +E S G+ R + +YERA+ P LWL YT
Sbjct: 56 RSEFEDRLRRNGLNMS----TWIKYASWEASQGEMDRCRSIYERALDVEPHHLPLWLRYT 111
Query: 65 QYLDKTLKVGNV--VRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLC 122
+ + LK+ NV R++Y RA P + +LW + + LE + VFE+ +
Sbjct: 112 E---QELKMRNVQHARNLYDRAVSILPRIDQLWYK-YVHLEELLGNIPGTRQVFERWMKW 167
Query: 123 AF--STFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDG 180
+ Y++L + R D L R + + E+
Sbjct: 168 EPEEKAWHAYINLEV-RYDELDR------------------------ASAIWERCVTCHP 202
Query: 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG----AMLEA---WQSYISMEIELDHI 233
+ + + WA E+ G ++ AR V++ L G AM +A + ++ ME L
Sbjct: 203 VPKQWIRWAKFEEDRG-NLEKARIVFQMALDYIGEDEDAMEKAQSVFTAFAKMETRLKEY 261
Query: 234 NEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSV 277
AR IYK +R + SE I ++ RFE+++GT+ + +V
Sbjct: 262 ERARVIYKYAL-ERLPRSKSEGIYSSYTRFEKQFGTMNSVEDTV 304
Score = 36.6 bits (83), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Query: 148 SGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWE 207
S V+ + DY + E R ++++ + + +A E S G +M R ++E
Sbjct: 36 SAPVQKIEDYEELEEYRGRRRSEFEDRLRRNGLNMSTWIKYASWEASQG-EMDRCRSIYE 94
Query: 208 RLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245
R L + L W Y E+++ ++ AR++Y R S
Sbjct: 95 RALDVEPHHLPLWLRYTEQELKMRNVQHARNLYDRAVS 132
>sp|Q14690|RRP5_HUMAN Protein RRP5 homolog OS=Homo sapiens GN=PDCD11 PE=1 SV=3
Length = 1871
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 118/274 (43%), Gaps = 45/274 (16%)
Query: 31 KYEQSSGDPGRVQLL---YERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKN 87
+ E++ DPGR ++R + P SS LWL Y + + ++ R V RA K
Sbjct: 1590 RIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKA-RAVAERALKT 1648
Query: 88 CPWVGE-----LWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRID--- 139
+ E +WV +LL+LE S+E ++ VFE+++ + E L +FL D
Sbjct: 1649 ISFREEQEKLNVWV-ALLNLENMYGSQESLTKVFERAV-----QYNEPLKVFLHLADIYA 1702
Query: 140 ---------GLRRRIL--FSGEVEGVLDYS--LIRET--------FQRASDYLSEQMKNT 178
L R+L F E + Y L+R + QRA + L + ++
Sbjct: 1703 KSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSK-EHV 1761
Query: 179 DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARS 238
D + A +A LE +G D A+ ++E L + W YI M I+ + R
Sbjct: 1762 D----VIAKFAQLEFQLG-DAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRD 1816
Query: 239 IYKRCYSKRFTGTGSEDICHAWLRFEREYGTLED 272
I++R + +L +E+++GT +D
Sbjct: 1817 IFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKD 1850
Score = 38.9 bits (89), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDY 63
A +H Q + + L E + + E GD R + ++E ++ +P +D+W
Sbjct: 1742 AASHRVLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVW--- 1798
Query: 64 TQYLDKTLKVGNV--VRDVYSRAT--KNCPWVGELWVRSLLSLERSRASEEEISTVFEKS 119
+ Y+D T+K G+ VRD++ R P + + + L E+ +E+++ V K+
Sbjct: 1799 SVYIDMTIKHGSQKDVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKA 1858
Query: 120 L 120
L
Sbjct: 1859 L 1859
>sp|P63155|CRNL1_RAT Crooked neck-like protein 1 OS=Rattus norvegicus GN=Crnkl1 PE=2
SV=1
Length = 690
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 115/278 (41%), Gaps = 60/278 (21%)
Query: 10 EQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQ--------LLYERAITDFPVSSDLWL 61
++IS+Q+ E F+ Y I+ E+ GD ++ YE + P + D W
Sbjct: 280 DRISKQEAQ--ELFKNYTIF---EKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWF 334
Query: 62 DYTQYLDKTLKVGNVVRDVYSRATKNCPWVGE---------LWVRSLLSLERSRASEEEI 112
DY + ++ + + VR+VY RA N P + E LWV L E E
Sbjct: 335 DYLRLVESDAE-ADTVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEELEAKDPERT 393
Query: 113 STVFEKSLLC------AFSTFEEYLDLFLTRIDGL---RRRI-----------LFSGEVE 152
V++ SL F+ Y F R L RR + LF G +E
Sbjct: 394 RQVYQASLELIPHKKFTFAKMWLYYAQFEIRQKNLPFARRALGTSIGKCPKNKLFKGYIE 453
Query: 153 GVL---DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERL 209
L ++ R+ +++ ++ E N ++ A LE +G D+ AR ++E
Sbjct: 454 LELQLREFDRCRKLYEKFLEFGPE---NCTSWIKF----AELETILG-DIERARAIYE-- 503
Query: 210 LKISGAMLEA----WQSYISMEIELDHINEARSIYKRC 243
L IS L+ W+SYI EIE + R++Y++
Sbjct: 504 LAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRQL 541
Score = 37.0 bits (84), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 26 YMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRAT 85
++ Y ++E+S + R + +YERA+ + LWL Y + K +V N R+++ RA
Sbjct: 84 WIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQV-NHARNIWDRAI 142
Query: 86 KNCPWVGELWVR 97
P V + W +
Sbjct: 143 TTLPRVNQFWYK 154
Score = 36.6 bits (83), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 181 LLRLYAYW---AHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEAR 237
L R+ +W ++E+ +G ++ AR V+ER ++ +AW SYI+ E+ + AR
Sbjct: 145 LPRVNQFWYKYTYMEEMLG-NVAGARQVFERWMEWQPEE-QAWHSYINFELRYKEVERAR 202
Query: 238 SIYKR 242
+IY+R
Sbjct: 203 TIYER 207
Score = 35.8 bits (81), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 152 EGVLDYSL-IRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLL 210
E + DY L R+TF+ + ++ ++ + +A E+S+ K++ AR ++ER L
Sbjct: 57 EELNDYKLRKRKTFE-------DNIRKNRTVISNWIKYAQWEESL-KEIQRARSIYERAL 108
Query: 211 KISGAMLEAWQSYISMEIELDHINEARSIYKRC 243
+ + W Y ME++ +N AR+I+ R
Sbjct: 109 DVDYRNITLWLKYAEMEMKNRQVNHARNIWDRA 141
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 56/256 (21%), Positives = 106/256 (41%), Gaps = 46/256 (17%)
Query: 23 FQQYMIYLKY---EQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNV--V 77
++ ++LKY E + + +++RAIT P + W YT Y+++ L GNV
Sbjct: 112 YRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYT-YMEEML--GNVAGA 168
Query: 78 RDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLC--------AFSTFEE 129
R V+ R + P + W S ++ E E T++E+ +L ++ FEE
Sbjct: 169 RQVFERWMEWQP-EEQAW-HSYINFELRYKEVERARTIYERFVLVHPAVKNWIKYARFEE 226
Query: 130 YLDLFLTRIDGLRRRILFSGE--------------VEGVLDYSLIRETFQRASDYLSEQM 175
F R + F G+ E ++ +R ++ A D +S+Q
Sbjct: 227 KHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQE 286
Query: 176 KNTDGLLRLYAYWAHLEQSMG-----KDMVSA--RGVWERLLKISGAMLEAWQSYISMEI 228
L+ + E+ G +D++ + R +E +K + +AW Y+ + +
Sbjct: 287 AQE-----LFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRL-V 340
Query: 229 ELD-HINEARSIYKRC 243
E D + R +Y+R
Sbjct: 341 ESDAEADTVREVYERA 356
>sp|P63154|CRNL1_MOUSE Crooked neck-like protein 1 OS=Mus musculus GN=Crnkl1 PE=2 SV=1
Length = 690
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 115/278 (41%), Gaps = 60/278 (21%)
Query: 10 EQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQ--------LLYERAITDFPVSSDLWL 61
++IS+Q+ E F+ Y I+ E+ GD ++ YE + P + D W
Sbjct: 280 DRISKQEAQ--ELFKNYTIF---EKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWF 334
Query: 62 DYTQYLDKTLKVGNVVRDVYSRATKNCPWVGE---------LWVRSLLSLERSRASEEEI 112
DY + ++ + + VR+VY RA N P + E LWV L E E
Sbjct: 335 DYLRLVESDAE-ADTVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEELEAKDPERT 393
Query: 113 STVFEKSLLC------AFSTFEEYLDLFLTRIDGL---RRRI-----------LFSGEVE 152
V++ SL F+ Y F R L RR + LF G +E
Sbjct: 394 RQVYQASLELIPHKKFTFAKMWLYYAQFEIRQKNLPFARRALGTSIGKCPKNKLFKGYIE 453
Query: 153 GVL---DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERL 209
L ++ R+ +++ ++ E N ++ A LE +G D+ AR ++E
Sbjct: 454 LELQLREFDRCRKLYEKFLEFGPE---NCTSWIKF----AELETILG-DIERARAIYE-- 503
Query: 210 LKISGAMLEA----WQSYISMEIELDHINEARSIYKRC 243
L IS L+ W+SYI EIE + R++Y++
Sbjct: 504 LAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRQL 541
Score = 37.0 bits (84), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 26 YMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRAT 85
++ Y ++E+S + R + +YERA+ + LWL Y + K +V N R+++ RA
Sbjct: 84 WIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQV-NHARNIWDRAI 142
Query: 86 KNCPWVGELWVR 97
P V + W +
Sbjct: 143 TTLPRVNQFWYK 154
Score = 36.6 bits (83), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 181 LLRLYAYW---AHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEAR 237
L R+ +W ++E+ +G ++ AR V+ER ++ +AW SYI+ E+ + AR
Sbjct: 145 LPRVNQFWYKYTYMEEMLG-NVAGARQVFERWMEWQPEE-QAWHSYINFELRYKEVERAR 202
Query: 238 SIYKR 242
+IY+R
Sbjct: 203 TIYER 207
Score = 35.8 bits (81), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 152 EGVLDYSL-IRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLL 210
E + DY L R+TF+ + ++ ++ + +A E+S+ K++ AR ++ER L
Sbjct: 57 EELNDYKLRKRKTFE-------DNIRKNRTVISNWIKYAQWEESL-KEIQRARSIYERAL 108
Query: 211 KISGAMLEAWQSYISMEIELDHINEARSIYKRC 243
+ + W Y ME++ +N AR+I+ R
Sbjct: 109 DVDYRNITLWLKYAEMEMKNRQVNHARNIWDRA 141
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 56/256 (21%), Positives = 106/256 (41%), Gaps = 46/256 (17%)
Query: 23 FQQYMIYLKY---EQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNV--V 77
++ ++LKY E + + +++RAIT P + W YT Y+++ L GNV
Sbjct: 112 YRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYT-YMEEML--GNVAGA 168
Query: 78 RDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLC--------AFSTFEE 129
R V+ R + P + W S ++ E E T++E+ +L ++ FEE
Sbjct: 169 RQVFERWMEWQP-EEQAW-HSYINFELRYKEVERARTIYERFVLVHPAVKNWIKYARFEE 226
Query: 130 YLDLFLTRIDGLRRRILFSGE--------------VEGVLDYSLIRETFQRASDYLSEQM 175
F R + F G+ E ++ +R ++ A D +S+Q
Sbjct: 227 KHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQE 286
Query: 176 KNTDGLLRLYAYWAHLEQSMG-----KDMVSA--RGVWERLLKISGAMLEAWQSYISMEI 228
L+ + E+ G +D++ + R +E +K + +AW Y+ + +
Sbjct: 287 AQE-----LFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRL-V 340
Query: 229 ELD-HINEARSIYKRC 243
E D + R +Y+R
Sbjct: 341 ESDAEADTVREVYERA 356
>sp|Q6NS46|RRP5_MOUSE Protein RRP5 homolog OS=Mus musculus GN=Pdcd11 PE=2 SV=2
Length = 1862
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 114/274 (41%), Gaps = 45/274 (16%)
Query: 31 KYEQSSGDPGRVQLL---YERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKN 87
+ E++ DPGR ++R + P SS LWL Y + + ++ R V RA K
Sbjct: 1581 RIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKA-RAVAERALKT 1639
Query: 88 CPWVGE-----LWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRID--- 139
+ E +WV +LL+LE S+E ++ VFE+++ + E L +FL D
Sbjct: 1640 ISFREEQEKLNVWV-ALLNLENMYGSQESLTKVFERAV-----QYNEPLKVFLHLADIYT 1693
Query: 140 ---------GLRRRIL------------FSGEVEGVLDYSLIRETFQRASDYLSEQMKNT 178
L R+L + V G QRA + L + ++
Sbjct: 1694 KSEKYKEAGELYNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPAK-EHV 1752
Query: 179 DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARS 238
D +++ +A LE +G D+ A+ ++E L + W YI M I+ R
Sbjct: 1753 DVIVK----FAQLEFQLG-DVERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRD 1807
Query: 239 IYKRCYSKRFTGTGSEDICHAWLRFEREYGTLED 272
I++R + +L +E+++GT +D
Sbjct: 1808 IFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKD 1841
>sp|Q9BZJ0|CRNL1_HUMAN Crooked neck-like protein 1 OS=Homo sapiens GN=CRNKL1 PE=1 SV=4
Length = 848
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 112/277 (40%), Gaps = 60/277 (21%)
Query: 10 EQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQ--------LLYERAITDFPVSSDLWL 61
++IS+QD E F+ Y I+ E+ GD ++ YE + P + D W
Sbjct: 441 DRISKQDAQ--ELFKNYTIF---EKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWF 495
Query: 62 DYTQYLDKTLKVGNVVRDVYSRATKNCPWVGE---------LWVRSLLSLERSRASEEEI 112
DY + ++ + VR+VY RA N P + E LW+ L E E
Sbjct: 496 DYLRLVESDAE-AEAVREVYERAIANVPPIQEKRHWKRYIYLWINYALYEELEAKDPERT 554
Query: 113 STVFEKS----------------LLCAFSTFEEYLDL----FLTRIDGLRRRILFSGEVE 152
V++ S L F ++ L L T I + LF +E
Sbjct: 555 RQVYQASLELIPHKKFTFAKMWILYAQFEIRQKNLSLARRALGTSIGKCPKNKLFKVYIE 614
Query: 153 GVL---DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERL 209
L ++ R+ +++ ++ E N ++ A LE +G D+ AR ++E
Sbjct: 615 LELQLREFDRCRKLYEKFLEFGPE---NCTSWIKF----AELETILG-DIDRARAIYE-- 664
Query: 210 LKISGAMLEA----WQSYISMEIELDHINEARSIYKR 242
L IS L+ W+SYI EIE + R++Y+R
Sbjct: 665 LAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRR 701
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 181 LLRLYAYW---AHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEAR 237
L R+ +W ++E+ +G ++ AR V+ER ++ +AW SYI+ E+ ++ AR
Sbjct: 306 LPRVNQFWYKYTYMEEMLG-NVAGARQVFERWMEWQPEE-QAWHSYINFELRYKEVDRAR 363
Query: 238 SIYKR 242
+IY+R
Sbjct: 364 TIYER 368
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 26 YMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRAT 85
++ Y ++E+S + R + +YERA+ + LWL Y + K +V N R+++ RA
Sbjct: 245 WIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQV-NHARNIWDRAI 303
Query: 86 KNCPWVGELWVR 97
P V + W +
Sbjct: 304 TTLPRVNQFWYK 315
Score = 36.2 bits (82), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 152 EGVLDYSL-IRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLL 210
E + DY L R+TF+ + ++ ++ + +A E+S+ K++ AR ++ER L
Sbjct: 218 EELNDYKLRKRKTFE-------DNIRKNRTVISNWIKYAQWEESL-KEIQRARSIYERAL 269
Query: 211 KISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245
+ + W Y ME++ +N AR+I+ R +
Sbjct: 270 DVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAIT 304
Score = 32.7 bits (73), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 109/258 (42%), Gaps = 46/258 (17%)
Query: 23 FQQYMIYLKY---EQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNV--V 77
++ ++LKY E + + +++RAIT P + W YT Y+++ L GNV
Sbjct: 273 YRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYT-YMEEML--GNVAGA 329
Query: 78 RDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLC--------AFSTFEE 129
R V+ R + P + W S ++ E + T++E+ +L ++ FEE
Sbjct: 330 RQVFERWMEWQP-EEQAW-HSYINFELRYKEVDRARTIYERFVLVHPDVKNWIKYARFEE 387
Query: 130 YLDLFLTRIDGLRRRILFSGE--------------VEGVLDYSLIRETFQRASDYLSEQM 175
F R + F G+ E ++ +R ++ A D +S+Q
Sbjct: 388 KHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQ- 446
Query: 176 KNTDGLLRLYAYWAHLEQSMG-----KDMVSA--RGVWERLLKISGAMLEAWQSYISMEI 228
+ L + Y E+ G +D++ + R +E +K + +AW Y+ + +
Sbjct: 447 -DAQELFKNYTI---FEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRL-V 501
Query: 229 ELDHINEA-RSIYKRCYS 245
E D EA R +Y+R +
Sbjct: 502 ESDAEAEAVREVYERAIA 519
>sp|P87312|CLF1_SCHPO Pre-mRNA-splicing factor cwf4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cwf4 PE=1 SV=1
Length = 674
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 105/264 (39%), Gaps = 51/264 (19%)
Query: 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVV- 77
DS ++ Y++ E + + + L++RA+T P LW Y Y+++ L GN+
Sbjct: 100 DSTYIPLWLKYIECEMKNRNINHARNLFDRAVTQLPRVDKLWYKYV-YMEEML--GNITG 156
Query: 78 -RDVYSRATK-----NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA-------- 123
R V+ R K NC W+ S + +ER E ++E+ ++
Sbjct: 157 CRQVFERWLKWEPDENC-WM------SYIRMERRYHENERARGIYERFVVVHPEVTNWLR 209
Query: 124 FSTFEE-------YLDLFLTRIDGL-------RRRILFSGEVEGVLDYSLIRETFQRASD 169
++ FEE ++L ID L R I F+ +Y R F+ A D
Sbjct: 210 WARFEEECGNAANVRQVYLAAIDALGQEFLNERFFIAFAKFEIRQKEYERARTIFKYAID 269
Query: 170 YLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGV-------WERLLKISGAMLEAWQS 222
++ + LY + H E+ G + V +E+LLK S + W
Sbjct: 270 FMPRSKS-----MELYKEYTHFEKQFGDHLGVESTVLDKRRLQYEKLLKDSPYDYDTWLD 324
Query: 223 YISMEIELDHINEARSIYKRCYSK 246
+ +E IN R Y++ +K
Sbjct: 325 LLKLEESAGDINTIRETYEKAIAK 348
Score = 39.7 bits (91), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 95/240 (39%), Gaps = 49/240 (20%)
Query: 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD---------LWLDYTQYLDKTLKV 73
+ ++ LK E+S+GD ++ YE+AI P + +WL+Y + + +K
Sbjct: 319 YDTWLDLLKLEESAGDINTIRETYEKAIAKVPEVVEKNAWRRYVYIWLNYCLFEEIDVKD 378
Query: 74 GNVVRDVYSRATKNCPW----VGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEE 129
+ R VY A K P +LW+ + R R + T+ +C
Sbjct: 379 VDRARKVYQEALKLIPHKKFTFAKLWLMYAMFELRQRKIDVARKTLGRALGMCP------ 432
Query: 130 YLDLFLTRIDGLRRRILFSGEVE---GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYA 186
+ LF G +E + + R +++ Y E G
Sbjct: 433 -------------KPKLFRGYIEFEDAIKQFDRCRILYEKWILYDPEACAPWLG------ 473
Query: 187 YWAHLEQSMGKDMVSARGVWERLLKISGAMLE----AWQSYISMEIELDHINEARSIYKR 242
+A LE +G D AR ++ L ++ +LE W++YI E E +ARSIY++
Sbjct: 474 -YAALETKLG-DSDRARALYN--LAVNQPILETPELVWKAYIDFEFEEMEYGKARSIYQQ 529
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 17/85 (20%)
Query: 197 KDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSI---------------YK 241
K+ AR V+ER L + + W YI E++ +IN AR++ YK
Sbjct: 84 KEFARARSVFERALDVDSTYIPLWLKYIECEMKNRNINHARNLFDRAVTQLPRVDKLWYK 143
Query: 242 RCYSKRFTG--TGSEDICHAWLRFE 264
Y + G TG + WL++E
Sbjct: 144 YVYMEEMLGNITGCRQVFERWLKWE 168
>sp|Q5BDX1|CLF1_EMENI Pre-mRNA-splicing factor clf1 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=clf1
PE=3 SV=2
Length = 673
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 73/341 (21%), Positives = 134/341 (39%), Gaps = 78/341 (22%)
Query: 1 MCNARAHLEEQISRQDLSDSEKFQQYMIYLKY---EQSSGDPGRVQLLYERAITDFPVSS 57
+ R EEQ+ E + Y ++ + E+ SGDP RV+ +YERAI P S
Sbjct: 303 LAKRRVQYEEQLK-------ENLRNYDVWFDFARLEEQSGDPERVRDVYERAIAQIPPSQ 355
Query: 58 D---------LWLDYTQYLDKTLKVGNVVRDVYSRATKNCPW----VGELWVRSL----- 99
+ LW+ Y + + K + R VY+ K P ++W+
Sbjct: 356 EKRHWRRYIYLWIFYALWEEMEAKDIDRARQVYTECLKLIPHKKFTFAKVWLMKAQFEVR 415
Query: 100 -LSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVE------ 152
L+L+ +R + + + K L F Y+DL + +R R L+ ++E
Sbjct: 416 QLNLQAARKTLGQAIGMCPKDKL-----FRGYIDLERQLFEFVRCRTLYEKQIEWNPSNS 470
Query: 153 -----------GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVS 201
G+ D R ++ D + M ++ + E G +
Sbjct: 471 QSWIQYAELERGLDDTERARAIYELGIDQPTLDMPEL-----VWKAYIDFEDDEG-EYER 524
Query: 202 ARGVWERLLKISGAMLEAWQSYISMEIEL----------------DHINEARSIYKRC-- 243
R ++ERLL+ + ++ W +Y EI + + AR++++R
Sbjct: 525 ERQLYERLLQKTD-HVKVWINYARFEINVPDEEEEEEEEERPISDEAKRRARAVFERAHR 583
Query: 244 -YSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPR 283
+ ++ ++ +AW FE +G+ ED D ++K PR
Sbjct: 584 VFKEKELKEERVELLNAWRAFEHTHGSPEDID-KIEKQMPR 623
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 22/118 (18%)
Query: 169 DYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEI 228
DY+ N + +R YA W LEQ K+ AR ++ER L + + W YI E+
Sbjct: 63 DYVRRNRINMNNWMR-YAAW-ELEQ---KEFRRARSIFERALDVDSTSVPLWIRYIESEM 117
Query: 229 ELDHINEARSI---------------YKRCYSKRFTGT--GSEDICHAWLRFEREYGT 269
+IN AR++ YK Y + G G+ + W+ +E + G
Sbjct: 118 RNRNINHARNLLDRAVTILPRVDKLWYKYVYMEETLGNIPGTRQVFERWMSWEPDEGA 175
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKR 242
+L+ + ++E+++G ++ R V+ER + AW +YI +E + AR+I+
Sbjct: 141 KLWYKYVYMEETLG-NIPGTRQVFERWMSWEPDE-GAWSAYIKLEKRYNEFERARAIF-- 196
Query: 243 CYSKRFTGTGSEDICHA-WLRFEREYGT 269
+RFT E W RFE EYGT
Sbjct: 197 ---QRFTIVHPEPRNWIKWARFEEEYGT 221
>sp|Q6CJK2|CLF1_KLULA Pre-mRNA-splicing factor CLF1 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=CLF1 PE=3 SV=1
Length = 684
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 8/115 (6%)
Query: 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNV--VRDV 80
+Q+M Y ++E D R + +YERA+ LW+ QY+D +K N+ R++
Sbjct: 63 LRQWMRYAQFEFDQKDIRRARSIYERALLVDHGFIPLWI---QYIDSEIKWKNINHARNL 119
Query: 81 YSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFL 135
RAT P V +LW + LL LE S ++ + ++ + C+F + D F+
Sbjct: 120 LDRATNALPRVDKLWFKYLL-LEESLGNQGIVRGIYTR--WCSFEPGPDAWDSFI 171
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYK 241
LR + +A E KD+ AR ++ER L + + W YI EI+ +IN AR++
Sbjct: 63 LRQWMRYAQFEFDQ-KDIRRARSIYERALLVDHGFIPLWIQYIDSEIKWKNINHARNLLD 121
Query: 242 RC 243
R
Sbjct: 122 RA 123
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 9/96 (9%)
Query: 178 TDGLLRLYAYWAH---LEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHIN 234
T+ L R+ W LE+S+G + RG++ R +AW S+I E +
Sbjct: 124 TNALPRVDKLWFKYLLLEESLGNQGI-VRGIYTRWCSFEPGP-DAWDSFIEFETRCLNFE 181
Query: 235 EARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTL 270
R+I YSK D W+RFE+ +G +
Sbjct: 182 NVRNI----YSKFVLVHPQIDTWLKWVRFEQTHGDI 213
Score = 32.3 bits (72), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 5/111 (4%)
Query: 17 LSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNV 76
L S K + + Y+ E + RV+ LYE+ I P S WLDY + L++ L +
Sbjct: 425 LGKSPKPKVFKYYINLEIRLKEFDRVRKLYEKYIDFNPSSVQSWLDYAE-LEENLGDEDR 483
Query: 77 VRDVYSRATKNCPWVGE----LWVRSLLSLERSRASEEEISTVFEKSLLCA 123
R +Y + N + E + ++ ++ E A E+ ++EK L+ +
Sbjct: 484 SRGIYDISMSNNVGLSESDQLIVIQRYIAFETDAAEYEKARELYEKYLILS 534
>sp|Q4WT84|CLF1_ASPFU Pre-mRNA-splicing factor clf1 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=clf1 PE=3
SV=1
Length = 676
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 108/283 (38%), Gaps = 56/283 (19%)
Query: 1 MCNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD-- 58
+ R EEQ+ + + + + + E++SGDP RV+ +YERAI P S +
Sbjct: 303 LSKRRVQYEEQLK----ENPRNYDVWFDFARLEETSGDPDRVRDIYERAIAQIPPSQEKR 358
Query: 59 -------LWLDYTQYLDKTLKVGNVVRDVYSRATKNCPW----VGELWVRSLLSLERSRA 107
LW+ Y + + K + R +Y+ K P ++W+ R
Sbjct: 359 HWRRYIYLWIFYAIWEEMEAKDVDRARQIYTECLKLIPHKKFTFAKIWLLKAQFDIRQMD 418
Query: 108 SEEEISTVFEKSLLCAFST-FEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQR 166
+ T+ + +C F Y+DL + +R R L+ ++E
Sbjct: 419 LQAARKTLGQAIGMCPKDKLFRGYIDLERQLFEFVRCRTLYEKQIEW------------- 465
Query: 167 ASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE----AWQS 222
N+ ++ +A LE+ + D AR ++E L I ML+ W++
Sbjct: 466 -------NPANSQSWIK----YAELERGLD-DSERARAIFE--LGIDQPMLDMPELVWKA 511
Query: 223 YISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFER 265
YI E + R +Y+R K D W+ + R
Sbjct: 512 YIDFEEYEGEYDRVRQLYERLLQK-------TDHVKVWINYAR 547
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 22/118 (18%)
Query: 169 DYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEI 228
DY+ N + +R YA W LEQ K+ AR ++ER L ++ + W YI E+
Sbjct: 63 DYVRRNRLNMNNWMR-YASW-ELEQ---KEFRRARSIFERALDVNPTSVVLWIRYIESEM 117
Query: 229 ELDHINEARSI---------------YKRCYSKRFTGT--GSEDICHAWLRFEREYGT 269
+IN AR++ YK Y + G G+ + W+ +E + G
Sbjct: 118 RNRNINHARNLLDRAVTILPRVDKFWYKYVYMEETLGNIQGTRQVFERWMSWEPDEGA 175
Score = 36.6 bits (83), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 181 LLRLYAYW---AHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEAR 237
L R+ +W ++E+++G ++ R V+ER + AW +YI +E + AR
Sbjct: 136 LPRVDKFWYKYVYMEETLG-NIQGTRQVFERWMSWEPDE-GAWSAYIKLEKRYNEFERAR 193
Query: 238 SIYKRCYSKRFTGTGSEDICHA-WLRFEREYGT 269
+I+ +RFT E W RFE EYGT
Sbjct: 194 AIF-----QRFTIVHPEPRNWIKWARFEEEYGT 221
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 59/279 (21%), Positives = 115/279 (41%), Gaps = 40/279 (14%)
Query: 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYT 64
R E+ + R L+ +M Y +E + R + ++ERA+ P S LW+
Sbjct: 58 RKEFEDYVRRNRLN----MNNWMRYASWELEQKEFRRARSIFERALDVNPTSVVLWI--- 110
Query: 65 QYLDKTLKVGNV--VRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLC 122
+Y++ ++ N+ R++ RA P V + W + + +E + + + VFE+ +
Sbjct: 111 RYIESEMRNRNINHARNLLDRAVTILPRVDKFWYK-YVYMEETLGNIQGTRQVFERWM-- 167
Query: 123 AFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLL 182
++ E ++ L +R ++ R FQR + E
Sbjct: 168 SWEPDEGAWSAYIK----LEKR---------YNEFERARAIFQRFTIVHPEP-------- 206
Query: 183 RLYAYWAHLEQSMG-KDMVSARGVWERLLKISGAML---EAWQSYISMEIELDHINEARS 238
R + WA E+ G D+V R V+ ++ G + + +Y E +L AR+
Sbjct: 207 RNWIKWARFEEEYGTSDLV--REVYGMAIETLGEDFMDEKLFIAYAKFEAKLKEYERARA 264
Query: 239 IYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSV 277
IYK R + + + A+ FE+++G E + +
Sbjct: 265 IYKYALD-RLPRSKAMALHKAYTTFEKQFGDREGVEDVI 302
>sp|Q99LI7|CSTF3_MOUSE Cleavage stimulation factor subunit 3 OS=Mus musculus GN=Cstf3 PE=1
SV=1
Length = 717
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 111/266 (41%), Gaps = 30/266 (11%)
Query: 41 RVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLL 100
RV YE+ + D+W + QYL+++ K+ A K G++ L
Sbjct: 275 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL---------LAEK-----GDMNNAKLF 320
Query: 101 SLERSRASEEEISTVFEKSLLC--AFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYS 158
S E + E IST+ +K++L A++ +EE + ++ + R+L +++ L Y
Sbjct: 321 SDEAANIYERAISTLLKKNMLLYFAYADYEES-RMKYEKVHSIYNRLLAIEDIDPTLVYI 379
Query: 159 LIRETFQRASDYLSEQM----KNTDGLLR--LYAYWAHLEQSMGKDMVSARGVWERLLKI 212
+ +RA S +M D R +Y A +E KD A ++E LK
Sbjct: 380 QYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK 439
Query: 213 SGAMLEAWQSYISMEIELDHINEARSIYKRCY-SKRFTGTGSEDICHAWLRFEREYGTLE 271
G + E +YI L+ N R +++R S S +I +L FE G L
Sbjct: 440 YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 499
Query: 272 DFDHSVQKVTPRLEELRLFRSQQESK 297
S+ KV R FR + E K
Sbjct: 500 ----SILKVEKR--RFTAFREEYEGK 519
Score = 32.3 bits (72), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 52/107 (48%), Gaps = 9/107 (8%)
Query: 165 QRASDYLSEQMKNTDGLLRLYAY----WAHL-EQSMGKDMVSARGVWERLLKISGAMLEA 219
++A++Y+ E++K + L Y W+ L ++ + + AR +ERL+ +
Sbjct: 8 EQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRF 67
Query: 220 WQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFERE 266
W+ YI EI+ + ++ +++RC K D+ +L + RE
Sbjct: 68 WKLYIEAEIKAKNYDKVEKLFQRCLMKVL----HIDLWKCYLSYVRE 110
>sp|Q12996|CSTF3_HUMAN Cleavage stimulation factor subunit 3 OS=Homo sapiens GN=CSTF3 PE=1
SV=1
Length = 717
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 102/239 (42%), Gaps = 24/239 (10%)
Query: 41 RVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLL 100
RV YE+ + D+W + QYL+++ K+ A K G++ L
Sbjct: 275 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL---------LAEK-----GDMNNAKLF 320
Query: 101 SLERSRASEEEISTVFEKSLLC--AFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYS 158
S E + E IST+ +K++L A++ +EE + ++ + R+L +++ L Y
Sbjct: 321 SDEAANIYERAISTLLKKNMLLYFAYADYEES-RMKYEKVHSIYNRLLAIEDIDPTLVYI 379
Query: 159 LIRETFQRASDYLSEQM------KNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212
+ +RA S +M ++T +Y A +E KD A ++E LK
Sbjct: 380 QYMKFARRAEGIKSGRMIFKKAREDTRTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK 439
Query: 213 SGAMLEAWQSYISMEIELDHINEARSIYKRCY-SKRFTGTGSEDICHAWLRFEREYGTL 270
G + E +YI L+ N R +++R S S +I +L FE G L
Sbjct: 440 YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 498
Score = 32.3 bits (72), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 52/107 (48%), Gaps = 9/107 (8%)
Query: 165 QRASDYLSEQMKNTDGLLRLYAY----WAHL-EQSMGKDMVSARGVWERLLKISGAMLEA 219
++A++Y+ E++K + L Y W+ L ++ + + AR +ERL+ +
Sbjct: 8 EQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRF 67
Query: 220 WQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFERE 266
W+ YI EI+ + ++ +++RC K D+ +L + RE
Sbjct: 68 WKLYIEAEIKAKNYDKVEKLFQRCLMKVL----HIDLWKCYLSYVRE 110
>sp|Q5RDW9|CSTF3_PONAB Cleavage stimulation factor subunit 3 OS=Pongo abelii GN=CSTF3 PE=2
SV=1
Length = 717
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 102/239 (42%), Gaps = 24/239 (10%)
Query: 41 RVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLL 100
RV YE+ + D+W + QYL+++ K+ A K G++ L
Sbjct: 275 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL---------LAEK-----GDMNNAKLF 320
Query: 101 SLERSRASEEEISTVFEKSLLC--AFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYS 158
S E + E IST+ +K++L A++ +EE + ++ + R+L +++ L Y
Sbjct: 321 SDEAANIYERAISTLLKKNMLLYFAYADYEES-RMKYEKVHSIYNRLLAIEDIDPTLVYI 379
Query: 159 LIRETFQRASDYLSEQM------KNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212
+ +RA S +M ++T +Y A +E KD A ++E LK
Sbjct: 380 QYMKFARRAEGIKSGRMIFKKAREDTRTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK 439
Query: 213 SGAMLEAWQSYISMEIELDHINEARSIYKRCY-SKRFTGTGSEDICHAWLRFEREYGTL 270
G + E +YI L+ N R +++R S S +I +L FE G L
Sbjct: 440 YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 498
Score = 32.7 bits (73), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 52/107 (48%), Gaps = 9/107 (8%)
Query: 165 QRASDYLSEQMKNTDGLLRLYAY----WAHL-EQSMGKDMVSARGVWERLLKISGAMLEA 219
++A++Y+ E++K + L Y W+ L ++ + + AR +ERL+ +
Sbjct: 8 EQAAEYVPEKVKKAEKKLEENPYDLDAWSTLIREAQNQPIDKARKTYERLVAQFPSSGRF 67
Query: 220 WQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFERE 266
W+ YI EI+ + ++ +++RC K D+ +L + RE
Sbjct: 68 WKLYIEAEIKAKNYDKVEKLFQRCLMKVL----HIDLWKCYLSYVRE 110
>sp|A7MB10|RRP5_BOVIN Protein RRP5 homolog OS=Bos taurus GN=PDCD11 PE=2 SV=1
Length = 1874
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 41/224 (18%)
Query: 78 RDVYSRATKNCPWVGE-----LWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLD 132
R V RA K + E +WV +LL+LE S+E ++ VFE+++ + E L
Sbjct: 1642 RAVAERALKTISFREEQEKLNVWV-ALLNLENMYGSQESLTKVFERAV-----QYNEPLK 1695
Query: 133 LFLTRID------------GLRRRIL--FSGEVEGVLDYS--LIR--------ETFQRAS 168
+FL D L R+L F E + Y L+R QRA
Sbjct: 1696 VFLHLADIYTKSEKFQEAGELYNRMLKRFRQEKAVWVKYGAFLLRRGKAEASHRVMQRAL 1755
Query: 169 DYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEI 228
+ L ++ ++ D + A +A LE +G D AR ++E L I + W YI M I
Sbjct: 1756 ECLPKK-EHVD----VIAKFAQLEFQLG-DAERARAIFESTLSIYPKRTDVWSVYIDMII 1809
Query: 229 ELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLED 272
+ EAR+I++R + +L +E+++G+ +D
Sbjct: 1810 KHGSQKEARAIFERVIHLSLAPKRMKFFFKRYLDYEKQHGSEKD 1853
>sp|Q54XP4|CRNL1_DICDI Crooked neck-like protein 1 OS=Dictyostelium discoideum GN=crnkl1
PE=3 SV=1
Length = 705
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 114/269 (42%), Gaps = 59/269 (21%)
Query: 1 MCNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD-- 58
+ R EE+I + +S+ + + YLK E+ +G+ + + +YER+I + P +++
Sbjct: 306 LGKKRFQYEEEIKK----NSKNYDIWFDYLKMEEINGEIEKTREIYERSIGNLPPTNEKK 361
Query: 59 -------LWLDYTQYLDKTLKVGNVVRDVYSRATKNCPW----VGELWVRSL------LS 101
LW++Y + + K R VYS K P ++W+ L+
Sbjct: 362 HWKRYIYLWINYALFEELISKDMERARSVYSECIKLIPHKEFSFSKIWILYANFEIRQLN 421
Query: 102 LERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIR 161
L+++R + KS F++Y+ L E+E + ++ +R
Sbjct: 422 LDKARLIYGQAIGRNPKS-----KIFDQYIHL----------------EIE-LGNFDRVR 459
Query: 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE--- 218
+++ YL N D + A LE +G + V AR ++E L I L+
Sbjct: 460 TLYEK---YLEIMPDNCDAWCKF----AQLETELG-ETVRARAIFE--LAIQQPNLDRPE 509
Query: 219 -AWQSYISMEIELDHINEARSIYKRCYSK 246
W+ +I EI+L + + +Y++ K
Sbjct: 510 VVWKDFIDSEIQLKQFDFVKQLYRKLLEK 538
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRC 243
+Y +A E+S KD+ AR V+ER L I + W Y ME++ +IN AR+I+ R
Sbjct: 77 IYIKYAAWEESQ-KDLTRARSVFERFLDIDHRIPTVWIKYAEMEMKNKNINLARNIWDRA 135
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 93/250 (37%), Gaps = 44/250 (17%)
Query: 28 IYLKYEQSSGDPGRVQL---LYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRA 84
+++KY + + L +++RA+ P S LW YT +++ L R ++ R
Sbjct: 111 VWIKYAEMEMKNKNINLARNIWDRAVCLLPRVSQLWFKYT-FMEDMLGNYPAARAIFERW 169
Query: 85 TKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLC--------AFSTFEEYLDLFLT 136
+ P + W S L E+ E +FEK +L ++ FEE L
Sbjct: 170 MQWKP-EPQAW-NSYLKFEQRLKLFENTRLIFEKYILVHPYIKTWIKYTKFEERLGNIEN 227
Query: 137 RIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWA-HLEQSM 195
+R I F GE +G + I A E+ K + +Y Y H+ +S
Sbjct: 228 ARTIFQRAIEFLGE-DGNDEQLFI------AFAKFEEKYKEIERARVIYKYAIDHVPKSR 280
Query: 196 GKDMVSA----------------------RGVWERLLKISGAMLEAWQSYISMEIELDHI 233
KD+ R +E +K + + W Y+ ME I
Sbjct: 281 AKDLFDTFTNFEKQHGDRIGIEDVVLGKKRFQYEEEIKKNSKNYDIWFDYLKMEEINGEI 340
Query: 234 NEARSIYKRC 243
+ R IY+R
Sbjct: 341 EKTREIYERS 350
>sp|Q750X3|CLF1_ASHGO Pre-mRNA-splicing factor CLF1 OS=Ashbya gossypii (strain ATCC 10895
/ CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=CLF1 PE=3
SV=1
Length = 683
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 69/137 (50%), Gaps = 13/137 (9%)
Query: 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYT 64
R+ EE + R L +Q++ Y +E D R + ++ERA+ P +WL
Sbjct: 46 RSEFEEALKRNRLD----VRQWLRYAAFEYEQRDMRRARSVFERALAVAPGDVVVWL--- 98
Query: 65 QYLDKTLKVGNV--VRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEK--SL 120
+Y+D L+ +V R++ RAT P V +LW + +L +E S E + V+ K +L
Sbjct: 99 RYVDCELRARDVNHARNLLVRATALLPRVDKLWYKYVL-MEESLGQVELVRGVYTKWCTL 157
Query: 121 LCAFSTFEEYLDLFLTR 137
A + ++ ++D F TR
Sbjct: 158 EPAAAAWDAFVD-FETR 173
Score = 35.4 bits (80), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 154 VLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS 213
+LD +R+ +R E +K +R + +A E +DM AR V+ER L ++
Sbjct: 32 ILDVEELRDWQRRKRSEFEEALKRNRLDVRQWLRYAAFEYEQ-RDMRRARSVFERALAVA 90
Query: 214 GAMLEAWQSYISMEIELDHINEARSIYKRC 243
+ W Y+ E+ +N AR++ R
Sbjct: 91 PGDVVVWLRYVDCELRARDVNHARNLLVRA 120
>sp|Q9HF03|CLF1_CRYNH Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var.
grubii serotype A (strain H99 / ATCC 208821 / CBS 10515
/ FGSC 9487) GN=CLF1 PE=3 SV=1
Length = 724
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 102/256 (39%), Gaps = 52/256 (20%)
Query: 29 YLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNV--VRDVYSRATK 86
Y ++E S + R + ++ERA+ P S DLW+ YT D LK N+ R+++ RA
Sbjct: 81 YAQWEASQNEYERSRSVFERALDVDPRSVDLWIKYT---DMELKARNINHARNLFDRAIT 137
Query: 87 NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLR---- 142
P V LW + + YL+ L + G R
Sbjct: 138 LLPRVDALWYKYV------------------------------YLEELLLNVSGARQIFE 167
Query: 143 RRILFSGEVEGVLDYSLIRETFQ---RASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDM 199
R + + + Y + E + RAS + E+ + + + WA E+ G+
Sbjct: 168 RWMQWEPNDKAWQSYIKLEERYNELDRASA-IYERWIACRPIPKNWVAWAKFEEDRGQPD 226
Query: 200 VSARGVWERLLKISGAMLE-------AWQSYISMEIELDHINEARSIYKRCYSKRFTGTG 252
AR V++ L+ G E + ++ ME L AR IYK + R +
Sbjct: 227 -KAREVFQTALEFFGDEEEQVEKAQSVFAAFARMETRLKEFERARVIYKFALA-RLPRSK 284
Query: 253 SEDICHAWLRFEREYG 268
S + + +FE+++G
Sbjct: 285 SASLYAQYTKFEKQHG 300
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 99/255 (38%), Gaps = 58/255 (22%)
Query: 6 AHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD------- 58
A LEE R D D E + P RV+ +YERA+ + P + +
Sbjct: 335 ARLEEDAYRADREDGEDVE--------------PMRVREVYERAVANVPPALEKRYWRRY 380
Query: 59 --LWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVF 116
LWL Y + + K + RDVY A K P + F
Sbjct: 381 IYLWLQYAAFEEIDTKDYDRARDVYKAAVKLVP---------------------HKTFTF 419
Query: 117 EKSLLCAFSTFE-EYLDLFLTR------IDGLRRRILFSGEVEGVLDYSLIRETFQRASD 169
K L A++ FE LD+ R I + LF+G +E L+ L RE F R
Sbjct: 420 AK-LWLAYAYFEIRRLDVSAARKVLGAGIGMCPKPKLFTGYIE--LEMRL-RE-FDRVRT 474
Query: 170 YLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE-AWQSYISMEI 228
+ + L + W +E ++ +D R ++E ++ S M E W++YI E
Sbjct: 475 LYEKFLTYDPSLSSAWIQWTQVESAV-EDFERVRAIFELAVQQSLDMPEIVWKAYIDFEA 533
Query: 229 ELDHINEARSIYKRC 243
AR++Y+R
Sbjct: 534 GEGERERARNLYERL 548
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 14/203 (6%)
Query: 29 YLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC 88
Y++ E + RV+ LYE+ +T P S W+ +TQ ++ ++ VR ++ A +
Sbjct: 459 YIELEMRLREFDRVRTLYEKFLTYDPSLSSAWIQWTQ-VESAVEDFERVRAIFELAVQQS 517
Query: 89 PWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFS 148
+ E+ ++ + E E ++E+ LL S + ++ L I L
Sbjct: 518 LDMPEIVWKAYIDFEAGEGERERARNLYER-LLERTSHVKVWISYALMEIATLGGGEDED 576
Query: 149 G-EVEG-VLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMG--------KD 198
G E+EG D L R+ F+R L + + D + L + W EQ G +D
Sbjct: 577 GNEIEGEAGDADLARKVFERGYKDLRAKGEKEDRAVLLES-WKSFEQEHGDEEMLAKVED 635
Query: 199 MV-SARGVWERLLKISGAMLEAW 220
M+ + R W + SG + E W
Sbjct: 636 MLPTTRKRWRKAEDGSGELEEYW 658
>sp|P0CO10|CLF1_CRYNJ Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=CLF1 PE=3 SV=1
Length = 726
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 102/256 (39%), Gaps = 52/256 (20%)
Query: 29 YLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNV--VRDVYSRATK 86
Y ++E S + R + ++ERA+ P S DLW+ YT D LK N+ R+++ RA
Sbjct: 81 YAQWEASQNEYERSRSVFERALDVDPRSVDLWIKYT---DMELKARNINHARNLFDRAIT 137
Query: 87 NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLR---- 142
P V LW + + YL+ L + G R
Sbjct: 138 LLPRVDALWYKYV------------------------------YLEELLLNVSGARQIFE 167
Query: 143 RRILFSGEVEGVLDYSLIRETFQ---RASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDM 199
R + + + Y + E + RAS + E+ + + + WA E+ G+
Sbjct: 168 RWMQWEPNDKAWQSYIKLEERYNELDRASA-IYERWIACRPIPKNWVTWAKFEEDRGQPD 226
Query: 200 VSARGVWERLLKISGAMLE-------AWQSYISMEIELDHINEARSIYKRCYSKRFTGTG 252
AR V++ L+ G E + ++ ME L AR IYK + R +
Sbjct: 227 -KAREVFQTALEFFGDEEEQVEKAQSVFAAFARMETRLKEFERARVIYKFALA-RLPRSK 284
Query: 253 SEDICHAWLRFEREYG 268
S + + +FE+++G
Sbjct: 285 SASLYAQYTKFEKQHG 300
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 96/257 (37%), Gaps = 62/257 (24%)
Query: 6 AHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD------- 58
A LEE R D D E + P RV+ +YERA+ + P + +
Sbjct: 335 ARLEEDAYRADREDGEDVE--------------PMRVREVYERAVANVPPALEKRYWRRY 380
Query: 59 --LWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVF 116
LWL Y + + K + RDVY A K P + F
Sbjct: 381 IYLWLQYAAFEEIDTKDYDRARDVYKAAVKLVP---------------------HKTFTF 419
Query: 117 EKSLLCAFSTFEEYLDLFLTRID-GLRRRILFSG--------EVEGVLDYSLIRETFQRA 167
K L A++ FE + R+D R++L +G G ++ + F R
Sbjct: 420 AK-LWLAYAYFE------IRRLDVSAARKVLGAGIGMCPKPKLFTGYIELEMRLREFDRV 472
Query: 168 SDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE-AWQSYISM 226
+ + L + W +E ++ +D R ++E ++ S M E W++YI
Sbjct: 473 RTLYEKFLTYDPSLSSAWIQWTQVESAV-EDFERVRAIFELAVQQSLDMPEIVWKAYIDF 531
Query: 227 EIELDHINEARSIYKRC 243
E AR++Y+R
Sbjct: 532 EAGEGERERARNLYERL 548
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 14/203 (6%)
Query: 29 YLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC 88
Y++ E + RV+ LYE+ +T P S W+ +TQ ++ ++ VR ++ A +
Sbjct: 459 YIELEMRLREFDRVRTLYEKFLTYDPSLSSAWIQWTQ-VESAVEDFERVRAIFELAVQQS 517
Query: 89 PWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFS 148
+ E+ ++ + E E ++E+ LL S + ++ L I L
Sbjct: 518 LDMPEIVWKAYIDFEAGEGERERARNLYER-LLERTSHVKVWISYALMEIATLGGGEDED 576
Query: 149 G-EVEG-VLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMG--------KD 198
G E+EG D L R+ F+R L + + D + L + W EQ G +D
Sbjct: 577 GNEIEGEAGDADLARQVFERGYKDLRAKGEKEDRAVLLES-WKSFEQEHGDEETLAKVED 635
Query: 199 MV-SARGVWERLLKISGAMLEAW 220
M+ + R W + SG + E W
Sbjct: 636 MLPTTRKRWRKAEDGSGELEEYW 658
>sp|P0CO11|CLF1_CRYNB Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=CLF1 PE=3 SV=1
Length = 726
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 102/256 (39%), Gaps = 52/256 (20%)
Query: 29 YLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNV--VRDVYSRATK 86
Y ++E S + R + ++ERA+ P S DLW+ YT D LK N+ R+++ RA
Sbjct: 81 YAQWEASQNEYERSRSVFERALDVDPRSVDLWIKYT---DMELKARNINHARNLFDRAIT 137
Query: 87 NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLR---- 142
P V LW + + YL+ L + G R
Sbjct: 138 LLPRVDALWYKYV------------------------------YLEELLLNVSGARQIFE 167
Query: 143 RRILFSGEVEGVLDYSLIRETFQ---RASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDM 199
R + + + Y + E + RAS + E+ + + + WA E+ G+
Sbjct: 168 RWMQWEPNDKAWQSYIKLEERYNELDRASA-IYERWIACRPIPKNWVTWAKFEEDRGQPD 226
Query: 200 VSARGVWERLLKISGAMLE-------AWQSYISMEIELDHINEARSIYKRCYSKRFTGTG 252
AR V++ L+ G E + ++ ME L AR IYK + R +
Sbjct: 227 -KAREVFQTALEFFGDEEEQVEKAQSVFAAFARMETRLKEFERARVIYKFALA-RLPRSK 284
Query: 253 SEDICHAWLRFEREYG 268
S + + +FE+++G
Sbjct: 285 SASLYAQYTKFEKQHG 300
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 96/257 (37%), Gaps = 62/257 (24%)
Query: 6 AHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD------- 58
A LEE R D D E + P RV+ +YERA+ + P + +
Sbjct: 335 ARLEEDAYRADREDGEDVE--------------PMRVREVYERAVANVPPALEKRYWRRY 380
Query: 59 --LWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVF 116
LWL Y + + K + RDVY A K P + F
Sbjct: 381 IYLWLQYAAFEEIDTKDYDRARDVYKAAVKLVP---------------------HKTFTF 419
Query: 117 EKSLLCAFSTFEEYLDLFLTRID-GLRRRILFSG--------EVEGVLDYSLIRETFQRA 167
K L A++ FE + R+D R++L +G G ++ + F R
Sbjct: 420 AK-LWLAYAYFE------IRRLDVSAARKVLGAGIGMCPKPKLFTGYIELEMRLREFDRV 472
Query: 168 SDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE-AWQSYISM 226
+ + L + W +E ++ +D R ++E ++ S M E W++YI
Sbjct: 473 RTLYEKFLTYDPSLSSAWIQWTQVESAV-EDFERVRAIFELAVQQSLDMPEIVWKAYIDF 531
Query: 227 EIELDHINEARSIYKRC 243
E AR++Y+R
Sbjct: 532 EAGEGERERARNLYERL 548
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 14/203 (6%)
Query: 29 YLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC 88
Y++ E + RV+ LYE+ +T P S W+ +TQ ++ ++ VR ++ A +
Sbjct: 459 YIELEMRLREFDRVRTLYEKFLTYDPSLSSAWIQWTQ-VESAVEDFERVRAIFELAVQQS 517
Query: 89 PWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFS 148
+ E+ ++ + E E ++E+ LL S + ++ L I L
Sbjct: 518 LDMPEIVWKAYIDFEAGEGERERARNLYER-LLERTSHVKVWISYALMEIATLGGGEDED 576
Query: 149 G-EVEG-VLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMG--------KD 198
G E+EG D L R+ F+R L + + D + L + W EQ G +D
Sbjct: 577 GNEIEGEAGDADLARQVFERGYKDLRAKGEKEDRAVLLES-WKSFEQEHGDEETLAKVED 635
Query: 199 MV-SARGVWERLLKISGAMLEAW 220
M+ + R W + SG + E W
Sbjct: 636 MLPTTRKRWRKAEDGSGELEEYW 658
>sp|Q05022|RRP5_YEAST rRNA biogenesis protein RRP5 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RRP5 PE=1 SV=1
Length = 1729
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 102/247 (41%), Gaps = 31/247 (12%)
Query: 46 YERAITDFPVSSDLWLDYTQYLDKTLKVGNV--VRDVYSRATKNCPWVGE-----LWVRS 98
+ER + P SS +W++Y + L++ + R++ RA K + E +W+ +
Sbjct: 1464 FERLLIGNPNSSVVWMNYMAF---QLQLSEIEKARELAERALKTINFREEAEKLNIWI-A 1519
Query: 99 LLSLERSRASEEEISTVFEKSL-----------LCAFSTFEEYLDLFLTRIDGLRRRILF 147
+L+LE + +EE + VF ++ L E D ++ F
Sbjct: 1520 MLNLENTFGTEETLEEVFSRACQYMDSYTIHTKLLGIYEISEKFDKAAELFKATAKK--F 1577
Query: 148 SGEVEGVL----DYSLIRETFQRASDYLSEQMKNTD--GLLRLYAYWAHLEQSMGKDMVS 201
GE + D+ + Q A L +K + + +A LE + G D
Sbjct: 1578 GGEKVSIWVSWGDFLISHNEEQEARTILGNALKALPKRNHIEVVRKFAQLEFAKG-DPER 1636
Query: 202 ARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWL 261
R ++E L+ + ++ W Y+ E++ + +++R +K+ T ++ + WL
Sbjct: 1637 GRSLFEGLVADAPKRIDLWNVYVDQEVKAKDKKKVEDLFERIITKKITRKQAKFFFNKWL 1696
Query: 262 RFEREYG 268
+FE G
Sbjct: 1697 QFEESEG 1703
>sp|Q6FW76|CLF1_CANGA Pre-mRNA-splicing factor CLF1 OS=Candida glabrata (strain ATCC 2001
/ CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CLF1
PE=3 SV=1
Length = 695
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 198 DMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246
DM AR ++ER L++ + + W YI E++L +IN AR+I +R +K
Sbjct: 76 DMRRARSIFERALRVHISYVPLWIRYIESELKLGYINHARNILERAITK 124
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 24 QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVG--NVVRDVY 81
+Q+M Y +E D R + ++ERA+ LW+ +Y++ LK+G N R++
Sbjct: 62 KQWMRYAVFEIEQHDMRRARSIFERALRVHISYVPLWI---RYIESELKLGYINHARNIL 118
Query: 82 SRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEK--SLLCAFSTFEEYLDL 133
RA P V +LW + L+ +E S A + + +F+K SL A ++ + D
Sbjct: 119 ERAITKLPRVDKLWYKYLI-VEESLAHFDIVRNLFQKWCSLEPAAHVWDSFTDF 171
>sp|Q5K654|CLF1_PARBR Pre-mRNA-splicing factor CLF1 OS=Paracoccidioides brasiliensis
GN=CLF1 PE=3 SV=1
Length = 677
Score = 40.4 bits (93), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 109/288 (37%), Gaps = 66/288 (22%)
Query: 1 MCNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD-- 58
+ R EEQI + + + + +++ E+SSGD RV+ +YERAI P S +
Sbjct: 303 LSKRRVQYEEQIK----ENPKNYDIWFDFVRLEESSGDVERVRDVYERAIAQMPPSQEKR 358
Query: 59 -------LWLDYTQYLDKTLKVGNVVRDVYSRATKNCPW----VGELWVRSL------LS 101
LW+ Y + + K +Y + P ++W+ +
Sbjct: 359 HWRRYIYLWIFYALWEELEAKDMERAHQIYQECIRLIPHKKFTFAKIWLMKAQFEIRQMD 418
Query: 102 LERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIR 161
L+ +R + K L F+ Y+DL + +R R LF ++E
Sbjct: 419 LQAARKTLGHAIGACPKDKL-----FKGYIDLERQLFEFVRCRKLFEKQIEW-------- 465
Query: 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEA-- 219
N ++ A LE+ + D+ AR ++E L IS +L+
Sbjct: 466 ------------SPSNCQAWIKF----AELERGLD-DIDRARAIYE--LGISQPVLDMPE 506
Query: 220 --WQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFER 265
W+SYI E + R++Y+R K + W+ F R
Sbjct: 507 LLWKSYIDFEEYEGEYDRTRALYERLLEK-------TNHVKVWINFAR 547
Score = 40.4 bits (93), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 97/225 (43%), Gaps = 29/225 (12%)
Query: 29 YLKYEQSSGDPGRVQ--------LLYERAITDFPVSSDLWLDYTQYLDKTLKVGNV--VR 78
Y +E+ GD V+ + YE I + P + D+W D+ + + + G+V VR
Sbjct: 285 YTTFEKQFGDREGVEDVILSKRRVQYEEQIKENPKNYDIWFDFVRLEESS---GDVERVR 341
Query: 79 DVYSRATKNCPWVGEL--WVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLT 136
DVY RA P E W R + L A EE+ K + A ++E + L
Sbjct: 342 DVYERAIAQMPPSQEKRHW-RRYIYLWIFYALWEELEA---KDMERAHQIYQECIRLIPH 397
Query: 137 RIDGLRRRILFSGEVE-GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSM 195
+ + L + E +D R+T A + D L + Y LE+ +
Sbjct: 398 KKFTFAKIWLMKAQFEIRQMDLQAARKTLGHAIGACPK-----DKLFKGYI---DLERQL 449
Query: 196 GKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIY 240
+ V R ++E+ ++ S + +AW + +E LD I+ AR+IY
Sbjct: 450 F-EFVRCRKLFEKQIEWSPSNCQAWIKFAELERGLDDIDRARAIY 493
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 22/118 (18%)
Query: 169 DYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEI 228
DY+ + + +R YA W LEQ K+ AR V+ER L + + W YI E+
Sbjct: 63 DYVRRNRISMNNWMR-YAQW-ELEQ---KEFRRARSVFERALDVDPTAVVLWIRYIEAEM 117
Query: 229 ELDHINEARSI---------------YKRCYSKRFTGT--GSEDICHAWLRFEREYGT 269
+ +IN AR++ YK Y + G G+ + W+ +E + G
Sbjct: 118 KTRNINHARNLLDRAVTIYSRVDKLWYKYVYMEEMLGNIPGTRQVFERWMSWEPDEGA 175
Score = 35.0 bits (79), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKR 242
+L+ + ++E+ +G ++ R V+ER + AW +YI +E + + R+I+
Sbjct: 141 KLWYKYVYMEEMLG-NIPGTRQVFERWMSWEPDE-GAWGAYIKLEKRYNEFDRVRAIF-- 196
Query: 243 CYSKRFTGTGSEDICHA-WLRFEREYGT 269
+RFT E W RFE EYGT
Sbjct: 197 ---ERFTVVHPEPKNWIKWARFEEEYGT 221
Score = 33.1 bits (74), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 114/277 (41%), Gaps = 36/277 (12%)
Query: 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYT 64
R E+ + R +S +M Y ++E + R + ++ERA+ P + LW+ Y
Sbjct: 58 RKEFEDYVRRNRIS----MNNWMRYAQWELEQKEFRRARSVFERALDVDPTAVVLWIRYI 113
Query: 65 QYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAF 124
+ KT + N R++ RA V +LW + + +E + VFE+ + ++
Sbjct: 114 EAEMKTRNI-NHARNLLDRAVTIYSRVDKLWYK-YVYMEEMLGNIPGTRQVFERWM--SW 169
Query: 125 STFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRL 184
E ++ L +R ++ +R F+R + + + KN
Sbjct: 170 EPDEGAWGAYIK----LEKR---------YNEFDRVRAIFERFT-VVHPEPKN------- 208
Query: 185 YAYWAHLEQSMG-KDMVSARGVWERLLKISGAML---EAWQSYISMEIELDHINEARSIY 240
+ WA E+ G DMV R V+ ++ G + + +Y E +L AR+IY
Sbjct: 209 WIKWARFEEEYGTSDMV--REVYGLAIETLGEDFMDEKLFIAYARYEAKLKEFERARAIY 266
Query: 241 KRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSV 277
K R S + A+ FE+++G E + +
Sbjct: 267 KYALD-RLPRAKSVALHKAYTTFEKQFGDREGVEDVI 302
>sp|Q7SGD2|CLF1_NEUCR Pre-mRNA-splicing factor clf-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=clf-1 PE=3 SV=1
Length = 695
Score = 39.7 bits (91), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVY 81
+ ++ Y ++E + R + ++ERA+ P ++ LW+ Y Q K + N R++
Sbjct: 71 RLSNWLQYAQWELEQKEFARARSVFERALDVHPNNTQLWIRYVQAEIKNRNI-NHARNLL 129
Query: 82 SRATKNCPWVGELWVRSLLSLE 103
RA P V LW + L +E
Sbjct: 130 DRAVTRLPRVTSLWYQYLYVME 151
Score = 36.2 bits (82), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 185 YAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCY 244
YA W LEQ K+ AR V+ER L + + W Y+ EI+ +IN AR++ R
Sbjct: 78 YAQW-ELEQ---KEFARARSVFERALDVHPNNTQLWIRYVQAEIKNRNINHARNLLDRAV 133
Query: 245 SK 246
++
Sbjct: 134 TR 135
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 195 MGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSE 254
M D+ R V++R +K +AW +YI +E + AR I+ + FT E
Sbjct: 152 MLGDIPGTRQVFDRWMKWQPDE-QAWSAYIRLEKRYGEFDRAREIF-----RAFTAVHPE 205
Query: 255 D-ICHAWLRFEREYGT----LEDFDHSVQKVTPRL 284
W +FE EYGT E F ++Q + L
Sbjct: 206 PRTWLKWAKFEEEYGTSDTVREVFQTAIQTIAETL 240
>sp|Q8K2Z2|PRP39_MOUSE Pre-mRNA-processing factor 39 OS=Mus musculus GN=Prpf39 PE=2 SV=3
Length = 665
Score = 39.7 bits (91), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 19/115 (16%)
Query: 29 YLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRAT--- 85
YL++E +G RV +L+ER + + + W+ Y +Y++ G VR V+SRA
Sbjct: 357 YLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHSIEG--VRHVFSRACTVH 414
Query: 86 -KNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEE-YLDLFLTRI 138
P LW A EE+ + E ++ TFEE L L + R+
Sbjct: 415 LPKKPMAHMLWA----------AFEEQQGNINEARII--LRTFEECVLGLAMVRL 457
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Query: 45 LYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVG--------ELWV 96
+Y R + P+S DLW+ Y +L +TL+ G+ + R T + +LW
Sbjct: 149 VYRRGLQAIPLSVDLWIHYINFLKETLEPGDQETNTTIRGTFEHAVLAAGTDFRSDKLW- 207
Query: 97 RSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGE 150
++ E + + E++ V+++ L + + F + R L +GE
Sbjct: 208 EMYINWENEQGNLREVTAVYDRILGIPTQLYSHHFQRFKEHVQNNLPRDLLTGE 261
>sp|P17886|CRN_DROME Protein crooked neck OS=Drosophila melanogaster GN=crn PE=2 SV=2
Length = 702
Score = 39.7 bits (91), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 69/324 (21%), Positives = 134/324 (41%), Gaps = 63/324 (19%)
Query: 11 QISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD---------LWL 61
Q ++ ++ + + YL+ ++ GD +++ YERAI++ P +++ LW+
Sbjct: 313 QYEQEVAANPTNYDAWFDYLRLIEAEGDRDQIRETYERAISNVPPANEKNFWRRYIYLWI 372
Query: 62 DYTQYLDKTLKVGNVVRDVYSRATKNCPW----VGELWVRSLLSLERSRASEEEISTVFE 117
+Y Y + + R +Y + P +LW+ L + R E + +
Sbjct: 373 NYALYEELEAEDAERTRQIYKTCLELIPHKQFTFSKLWL--LYAQFEIRCKELQRA---R 427
Query: 118 KSLLCAFST------FEEYLDLFLTRIDGLRRRILFS----------------GEVEGVL 155
K+L A F Y+DL + + R R+L+ E+E +L
Sbjct: 428 KALGLAIGMCPRDKLFRGYIDLEIQLREFERCRMLYEKFLEFGPENCVTWMKFAELENLL 487
Query: 156 -DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG 214
D R F+ L+ Q D L+ + E ++G+ + AR ++ERLL+ +
Sbjct: 488 GDTDRARAIFE-----LAVQQPRLDMPELLWKAYIDFEVALGETEL-ARQLYERLLERT- 540
Query: 215 AMLEAWQSYISMEIELDH----------INEARSIYKRCYSKRFTGTGSED----ICHAW 260
++ W S+ E+ L H + AR IY+R ++ G ++ + AW
Sbjct: 541 QHVKVWMSFAKFEMGLSHGDSGPDAELNVQLARRIYERA-NEMLRQLGDKESRVLLLEAW 599
Query: 261 LRFEREYGTLEDFDHSVQKVTPRL 284
FER+ ++ + K+ R+
Sbjct: 600 RDFERDASDSQEMQKVMDKMPRRI 623
Score = 35.4 bits (80), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 193 QSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTG 252
+ M +++ AR V+ER ++ +AWQ+Y++ E+ I+ AR IY +RF
Sbjct: 154 EEMLENVAGARQVFERWMEWQPEE-QAWQTYVNFELRYKEIDRAREIY-----ERFVYVH 207
Query: 253 SEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEEL 287
+ W++F R + F H ++V R E
Sbjct: 208 PD--VKNWIKFAR-FEESHGFIHGSRRVFERAVEF 239
Score = 32.7 bits (73), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 202 ARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245
AR +WER L + W Y ME++ +N AR+++ R +
Sbjct: 95 ARSIWERALDNEHRNVTLWLKYAEMEMKNKQVNHARNLWDRAVT 138
Score = 32.3 bits (72), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 166 RASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYIS 225
RA + N + L+ +A +E K + AR +W+R + I + + W Y
Sbjct: 94 RARSIWERALDNEHRNVTLWLKYAEMEMK-NKQVNHARNLWDRAVTIMPRVNQFWYKYTY 152
Query: 226 MEIELDHINEARSIYKR 242
ME L+++ AR +++R
Sbjct: 153 MEEMLENVAGARQVFER 169
>sp|Q86UA1|PRP39_HUMAN Pre-mRNA-processing factor 39 OS=Homo sapiens GN=PRPF39 PE=1 SV=3
Length = 669
Score = 39.3 bits (90), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 29 YLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRAT--- 85
YL++E +G RV +L+ER + + + W+ Y +Y++ G VR V+SRA
Sbjct: 359 YLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHSIEG--VRHVFSRACTIH 416
Query: 86 -KNCPWVGELWV 96
P V LW
Sbjct: 417 LPKKPMVHMLWA 428
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 9/114 (7%)
Query: 45 LYERAITDFPVSSDLWLDYTQYLDKTLKVG-----NVVRDVYSRATKNCPW---VGELWV 96
+Y R + P+S DLW+ Y +L +TL G N +R + A LW
Sbjct: 151 VYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNNTIRGTFEHAVLAAGTDFRSDRLW- 209
Query: 97 RSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGE 150
++ E + + E++ ++++ L + + F + R L +GE
Sbjct: 210 EMYINWENEQGNLREVTAIYDRILGIPTQLYSHHFQRFKEHVQNNLPRDLLTGE 263
>sp|Q4KLU2|PRP39_XENLA Pre-mRNA-processing factor 39 OS=Xenopus laevis GN=prpf39 PE=2 SV=1
Length = 641
Score = 39.3 bits (90), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 29 YLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATK-- 86
YL++E +G R+ +L+ER + + W+ Y +Y++ G VR VY+RA
Sbjct: 330 YLEFELENGSNERIVILFERCVIACACYEEFWIKYAKYMENHSVEG--VRHVYNRACHVH 387
Query: 87 --NCPWVGELWV 96
P V LW
Sbjct: 388 LAKKPMVHLLWA 399
>sp|Q1JPZ7|PRP39_DANRE Pre-mRNA-processing factor 39 OS=Danio rerio GN=prpf39 PE=2 SV=2
Length = 752
Score = 38.5 bits (88), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 29 YLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRAT--- 85
YL +E +G P RV +L+ER + + + W+ Y +YL+ VR +Y +A
Sbjct: 434 YLDFELENGTPERVVVLFERCLIACALYEEFWIKYAKYLESY--STEAVRHIYKKACTVH 491
Query: 86 -KNCPWVGELWVRSLLSLERSRASEEEISTVFE-KSLLCAFSTFEEYLDLFLTRIDGLRR 143
P V LW A EE+ ++ E +S+L A L + R L R
Sbjct: 492 LPKKPNVHLLWA----------AFEEQQGSIDEARSILKAVEVSVPGLAMVRLRRVSLER 541
Query: 144 RILFSGEVEGVL 155
R E E +L
Sbjct: 542 RHGNMEEAEALL 553
>sp|Q12309|CLF1_YEAST Pre-mRNA-splicing factor CLF1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=CLF1 PE=1 SV=1
Length = 687
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 8/113 (7%)
Query: 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVG--NVVRDVYS 82
Q++ Y ++E D R + ++ERA+ LW+ +Y+D LKV N R++ +
Sbjct: 67 QWIRYAQFEIEQHDMRRARSIFERALLVDSSFIPLWI---RYIDAELKVKCINHARNLMN 123
Query: 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEK--SLLCAFSTFEEYLDL 133
RA P V +LW + L+ +E S + E + +++ K SL + + ++D
Sbjct: 124 RAISTLPRVDKLWYKYLI-VEESLNNVEIVRSLYTKWCSLEPGVNAWNSFVDF 175
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 198 DMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245
DM AR ++ER L + + + W YI E+++ IN AR++ R S
Sbjct: 80 DMRRARSIFERALLVDSSFIPLWIRYIDAELKVKCINHARNLMNRAIS 127
>sp|Q7S1Y0|RNA14_NEUCR mRNA 3'-end-processing protein rna-14 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=rna-14 PE=3 SV=1
Length = 1167
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 197 KDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRC 243
D+ AR V+ER L I + W Y+ +E+ L++ +A I+ +C
Sbjct: 277 NDIDGARQVYERFLAIFPQAADIWVEYLDLELSLNNFPQAEGIFAKC 323
Score = 32.7 bits (73), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 45 LYERAITDFPVSSDLWLDYTQYLDKTLKVGNV--VRDVYSRATKNCPWVGELWVRSLLSL 102
+YER + FP ++D+W+ +YLD L + N ++++ P V LW R L +
Sbjct: 285 VYERFLAIFPQAADIWV---EYLDLELSLNNFPQAEGIFAKCLMTTPNV-NLWTRYLDYI 340
Query: 103 ER 104
R
Sbjct: 341 RR 342
>sp|Q7KRW8|PRP39_DROME Pre-mRNA-processing factor 39 OS=Drosophila melanogaster GN=CG1646
PE=1 SV=1
Length = 1066
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDK---TLKVGNVVR 78
+ + + YL +E GD RV +L+ER + + + WL +YL+ V ++VR
Sbjct: 704 QLKNWKDYLDFEIEKGDRERVLVLFERCLIACALYDEFWLKMLRYLESLEDQSGVVDLVR 763
Query: 79 DVYSRATK 86
DVY RA +
Sbjct: 764 DVYRRACR 771
Score = 35.8 bits (81), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 11/66 (16%)
Query: 29 YLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYL------DKTLKVGNVVRDVYS 82
Y YE+ G ++ER + P+S DLW+ Y ++ D+T VR Y
Sbjct: 419 YADYEKRKGIKANCYKVFERGLEAIPLSVDLWIHYLMHVKSNHGDDETF-----VRSQYE 473
Query: 83 RATKNC 88
RA K C
Sbjct: 474 RAVKAC 479
>sp|Q6C186|CLF1_YARLI Pre-mRNA-splicing factor CLF1 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=CLF1 PE=3 SV=1
Length = 676
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 177 NTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEA 236
NT +R YA W LEQ ++ AR V+ER L+++ + W YI E++ +IN A
Sbjct: 65 NTGQWMR-YAQW-ELEQ---REFARARSVFERALEVNSTHVPTWIRYIQCELKEKNINHA 119
Query: 237 RSIYKRCYS 245
R++ R +
Sbjct: 120 RNLLDRAVT 128
Score = 32.0 bits (71), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 86/227 (37%), Gaps = 56/227 (24%)
Query: 46 YERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGE-LWVRSLLSLER 104
YE + + P D W Y ++ + +R+++ RA N P + LW R +
Sbjct: 310 YEDQLKEDPADYDTWFSYITLGQESGLEADQIREIFERAVSNVPPHSKRLWRRYIF---- 365
Query: 105 SRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETF 164
L ++ +EE L + EVE RE +
Sbjct: 366 ---------------LWIKYAIWEE----------------LENKEVEKA------REIY 388
Query: 165 QRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYI 224
+ + + K T +++ WA E G ++ AR + R L +SG ++ YI
Sbjct: 389 KTCISIIPHK-KFT--FAKVWLLWAKFEIRHG-NLPEARKILGRGLGMSGGKPALYKGYI 444
Query: 225 SMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLE 271
++E +L + R +Y + Y ++F + W+ EY LE
Sbjct: 445 ALEAKLREFDRCRKLYDK-YVEKFA-----EFAAPWM----EYAELE 481
>sp|Q99590|SCAFB_HUMAN Protein SCAF11 OS=Homo sapiens GN=SCAF11 PE=1 SV=2
Length = 1463
Score = 32.7 bits (73), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 11/84 (13%)
Query: 311 KKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEENE-GRET----- 364
++TG+E RKS S +S R+K Q PKK +E+RQ Q+ + + + RE+
Sbjct: 821 RETGKESRKSQSPSPKNESARGRKKSRSQSPKKDIARERRQSQSRSPKRDTTRESRRSES 880
Query: 365 ----KQTVEEQPKKQP-IKDAVPG 383
++T E + QP +KD+ PG
Sbjct: 881 LSPRRETSRENKRSQPRVKDSSPG 904
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,554,711
Number of Sequences: 539616
Number of extensions: 6200656
Number of successful extensions: 32119
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 611
Number of HSP's that attempted gapping in prelim test: 28130
Number of HSP's gapped (non-prelim): 3533
length of query: 406
length of database: 191,569,459
effective HSP length: 120
effective length of query: 286
effective length of database: 126,815,539
effective search space: 36269244154
effective search space used: 36269244154
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)