Query 015472
Match_columns 406
No_of_seqs 251 out of 1591
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 06:38:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015472.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015472hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0128 RNA-binding protein SA 100.0 9E-34 2E-38 285.8 22.6 373 7-405 300-681 (881)
2 KOG1915 Cell cycle control pro 100.0 2.1E-32 4.6E-37 261.0 26.2 243 3-278 57-304 (677)
3 KOG1915 Cell cycle control pro 100.0 1.1E-30 2.4E-35 249.3 29.3 289 3-297 262-637 (677)
4 KOG1070 rRNA processing protei 99.9 4.8E-21 1E-25 201.9 27.6 243 6-275 1445-1692(1710)
5 KOG0495 HAT repeat protein [RN 99.9 1.4E-20 3.1E-25 186.2 27.3 236 4-273 535-772 (913)
6 KOG2047 mRNA splicing factor [ 99.9 2.5E-20 5.4E-25 184.2 26.2 232 22-275 476-715 (835)
7 KOG1258 mRNA processing protei 99.8 5.6E-19 1.2E-23 175.1 27.4 282 3-292 63-407 (577)
8 KOG1914 mRNA cleavage and poly 99.8 1.9E-19 4.1E-24 175.3 23.1 244 21-284 235-502 (656)
9 KOG0495 HAT repeat protein [RN 99.8 1.8E-18 3.9E-23 171.5 23.5 250 4-281 565-814 (913)
10 KOG2047 mRNA splicing factor [ 99.8 9.8E-18 2.1E-22 166.0 27.6 278 6-291 14-333 (835)
11 KOG1914 mRNA cleavage and poly 99.8 1.4E-16 3E-21 155.5 28.1 252 3-266 37-340 (656)
12 KOG1070 rRNA processing protei 99.7 1.6E-16 3.4E-21 168.3 22.9 210 42-279 1443-1659(1710)
13 PF05843 Suf: Suppressor of fo 99.7 1.5E-16 3.2E-21 151.1 15.0 116 156-279 16-132 (280)
14 KOG2396 HAT (Half-A-TPR) repea 99.7 1.1E-13 2.4E-18 134.5 27.2 135 2-141 34-191 (568)
15 KOG1258 mRNA processing protei 99.6 1.4E-13 3.1E-18 137.0 26.3 257 3-276 273-537 (577)
16 COG5107 RNA14 Pre-mRNA 3'-end 99.6 1.7E-13 3.7E-18 131.5 25.2 269 3-286 60-365 (660)
17 COG5107 RNA14 Pre-mRNA 3'-end 99.6 3.5E-14 7.7E-19 136.1 18.4 229 23-274 261-522 (660)
18 KOG2396 HAT (Half-A-TPR) repea 99.5 2.8E-12 6.1E-17 124.9 21.8 90 7-100 93-182 (568)
19 PF05843 Suf: Suppressor of fo 99.5 4.5E-13 9.8E-18 127.2 15.3 134 58-250 2-139 (280)
20 TIGR00990 3a0801s09 mitochondr 99.5 3.1E-11 6.7E-16 127.4 27.5 239 4-246 313-571 (615)
21 KOG4626 O-linked N-acetylgluco 99.5 6.8E-12 1.5E-16 124.7 20.0 237 2-245 235-484 (966)
22 TIGR00990 3a0801s09 mitochondr 99.4 2.2E-10 4.7E-15 120.9 32.8 187 35-245 306-495 (615)
23 KOG4626 O-linked N-acetylgluco 99.4 1.4E-10 3.1E-15 115.4 25.2 224 9-245 106-382 (966)
24 TIGR02917 PEP_TPR_lipo putativ 99.4 4.8E-10 1E-14 121.6 30.5 259 4-272 416-687 (899)
25 PRK15174 Vi polysaccharide exp 99.4 1.5E-09 3.3E-14 115.0 31.6 67 178-245 280-346 (656)
26 TIGR02917 PEP_TPR_lipo putativ 99.3 2.2E-09 4.7E-14 116.5 32.1 229 4-246 450-698 (899)
27 COG3063 PilF Tfp pilus assembl 99.3 1E-09 2.2E-14 97.8 23.7 206 25-289 37-245 (250)
28 PRK15174 Vi polysaccharide exp 99.3 4.9E-09 1.1E-13 111.2 31.6 238 3-272 94-336 (656)
29 PRK11189 lipoprotein NlpI; Pro 99.3 6.2E-09 1.3E-13 99.8 27.6 211 7-246 48-265 (296)
30 PRK11447 cellulose synthase su 99.3 7.9E-09 1.7E-13 116.5 32.3 263 4-280 370-697 (1157)
31 TIGR02521 type_IV_pilW type IV 99.3 6.6E-09 1.4E-13 94.0 26.0 199 23-245 31-231 (234)
32 PF13429 TPR_15: Tetratricopep 99.3 6.4E-11 1.4E-15 112.5 13.0 225 22-275 43-269 (280)
33 PRK11788 tetratricopeptide rep 99.2 4.1E-08 8.8E-13 97.4 31.9 226 35-274 47-302 (389)
34 PRK11788 tetratricopeptide rep 99.2 2.7E-08 5.9E-13 98.7 29.4 237 4-249 54-313 (389)
35 PRK09782 bacteriophage N4 rece 99.2 2.1E-08 4.5E-13 109.8 30.2 99 22-125 476-574 (987)
36 PRK11447 cellulose synthase su 99.2 3E-08 6.6E-13 111.8 30.2 91 184-278 463-553 (1157)
37 PRK12370 invasion protein regu 99.1 2.3E-08 5E-13 104.2 25.5 214 3-245 279-501 (553)
38 PF13429 TPR_15: Tetratricopep 99.1 8.6E-10 1.9E-14 104.8 13.6 221 26-275 11-235 (280)
39 PRK09782 bacteriophage N4 rece 99.1 2.1E-08 4.6E-13 109.7 25.9 240 4-277 495-734 (987)
40 KOG0128 RNA-binding protein SA 99.1 1E-07 2.2E-12 98.3 26.0 240 21-265 111-393 (881)
41 PRK12370 invasion protein regu 99.0 1.5E-07 3.2E-12 98.2 27.5 203 20-245 253-469 (553)
42 PRK11189 lipoprotein NlpI; Pro 99.0 6.6E-08 1.4E-12 92.7 22.6 199 3-231 82-285 (296)
43 PRK10049 pgaA outer membrane p 99.0 7.5E-07 1.6E-11 96.4 32.9 95 3-103 67-161 (765)
44 TIGR02521 type_IV_pilW type IV 99.0 5.3E-07 1.1E-11 81.4 25.7 195 56-275 30-224 (234)
45 PRK10049 pgaA outer membrane p 98.9 2.5E-06 5.5E-11 92.3 32.4 230 6-246 36-301 (765)
46 KOG0547 Translocase of outer m 98.9 3.4E-07 7.3E-12 89.6 21.8 213 32-272 335-555 (606)
47 COG3063 PilF Tfp pilus assembl 98.9 3.4E-07 7.5E-12 81.9 19.6 117 3-125 53-171 (250)
48 KOG1155 Anaphase-promoting com 98.8 5.5E-07 1.2E-11 87.7 21.0 192 2-210 340-534 (559)
49 PF08424 NRDE-2: NRDE-2, neces 98.8 2.5E-07 5.5E-12 89.6 18.9 168 3-213 3-184 (321)
50 KOG1155 Anaphase-promoting com 98.8 6.4E-07 1.4E-11 87.2 21.1 146 75-245 347-494 (559)
51 PRK10747 putative protoheme IX 98.8 3.9E-06 8.5E-11 83.9 24.8 89 183-278 297-385 (398)
52 KOG1125 TPR repeat-containing 98.8 1.5E-06 3.2E-11 86.9 21.1 240 33-276 295-564 (579)
53 TIGR00540 hemY_coli hemY prote 98.7 2.4E-05 5.2E-10 78.5 29.6 243 25-276 120-392 (409)
54 KOG0547 Translocase of outer m 98.7 2.4E-06 5.3E-11 83.8 20.9 234 4-261 345-578 (606)
55 KOG1129 TPR repeat-containing 98.7 9.5E-07 2.1E-11 82.7 16.8 204 31-246 231-458 (478)
56 KOG1125 TPR repeat-containing 98.7 7.5E-07 1.6E-11 88.9 17.1 211 56-281 285-522 (579)
57 PF08424 NRDE-2: NRDE-2, neces 98.7 2.4E-06 5.2E-11 82.8 20.1 169 44-248 6-185 (321)
58 COG5191 Uncharacterized conser 98.7 4.9E-08 1.1E-12 90.4 7.8 135 2-141 34-193 (435)
59 KOG1173 Anaphase-promoting com 98.7 6.4E-06 1.4E-10 82.2 22.4 254 8-269 267-542 (611)
60 PRK10747 putative protoheme IX 98.6 8.1E-05 1.8E-09 74.5 30.4 227 26-275 121-349 (398)
61 TIGR00540 hemY_coli hemY prote 98.6 1.3E-05 2.8E-10 80.5 24.6 218 4-247 137-400 (409)
62 PLN03218 maturation of RBCL 1; 98.6 8.7E-05 1.9E-09 82.4 32.9 90 183-275 685-775 (1060)
63 PLN03218 maturation of RBCL 1; 98.6 8.9E-05 1.9E-09 82.3 32.6 80 181-264 718-799 (1060)
64 PLN02789 farnesyltranstransfer 98.6 1.1E-05 2.4E-10 77.9 22.6 199 24-245 38-249 (320)
65 KOG1126 DNA-binding cell divis 98.6 5.9E-06 1.3E-10 83.8 20.4 172 50-245 414-585 (638)
66 KOG2076 RNA polymerase III tra 98.6 4E-05 8.6E-10 80.3 26.7 248 20-273 204-502 (895)
67 PF08311 Mad3_BUB1_I: Mad3/BUB 98.6 8.3E-07 1.8E-11 73.8 11.5 109 3-120 3-126 (126)
68 KOG2002 TPR-containing nuclear 98.6 5.6E-05 1.2E-09 79.8 26.9 118 6-128 517-647 (1018)
69 KOG1126 DNA-binding cell divis 98.6 3.8E-06 8.3E-11 85.2 17.7 200 19-245 417-619 (638)
70 TIGR03302 OM_YfiO outer membra 98.5 3.4E-05 7.4E-10 71.0 22.9 189 20-249 30-234 (235)
71 PRK15359 type III secretion sy 98.5 6.3E-06 1.4E-10 70.3 16.5 111 7-126 15-125 (144)
72 PRK10370 formate-dependent nit 98.5 3.4E-06 7.4E-11 76.0 14.8 115 6-125 60-176 (198)
73 PLN02789 farnesyltranstransfer 98.5 4.4E-05 9.5E-10 73.8 22.4 192 6-218 58-256 (320)
74 PLN03081 pentatricopeptide (PP 98.5 3.8E-05 8.2E-10 82.5 23.7 255 5-279 244-519 (697)
75 PRK10370 formate-dependent nit 98.4 8.4E-06 1.8E-10 73.4 15.4 115 74-245 55-172 (198)
76 KOG2002 TPR-containing nuclear 98.4 2.2E-05 4.8E-10 82.7 20.1 238 3-252 470-715 (1018)
77 PRK15359 type III secretion sy 98.4 1.2E-05 2.7E-10 68.5 14.5 43 183-226 93-135 (144)
78 PRK15179 Vi polysaccharide bio 98.3 0.00017 3.7E-09 76.6 23.7 65 181-246 153-217 (694)
79 TIGR02552 LcrH_SycD type III s 98.3 4.3E-05 9.3E-10 63.8 15.7 114 6-125 4-117 (135)
80 KOG2076 RNA polymerase III tra 98.3 0.00025 5.5E-09 74.5 23.6 199 23-243 139-342 (895)
81 COG5191 Uncharacterized conser 98.3 8.1E-07 1.8E-11 82.5 4.9 81 22-103 106-186 (435)
82 KOG3060 Uncharacterized conser 98.3 0.00047 1E-08 62.9 22.2 224 22-279 16-247 (289)
83 KOG1173 Anaphase-promoting com 98.3 0.00034 7.4E-09 70.2 22.8 246 22-273 243-508 (611)
84 KOG1840 Kinesin light chain [C 98.3 0.0013 2.8E-08 67.0 27.6 237 19-274 195-470 (508)
85 cd05804 StaR_like StaR_like; a 98.2 0.00019 4.2E-09 70.1 20.8 203 19-245 2-214 (355)
86 PRK15179 Vi polysaccharide bio 98.2 7.7E-05 1.7E-09 79.2 19.0 100 23-124 86-185 (694)
87 smart00777 Mad3_BUB1_I Mad3/BU 98.2 1.2E-05 2.6E-10 66.2 10.0 107 3-118 3-124 (125)
88 KOG2003 TPR repeat-containing 98.2 0.0006 1.3E-08 66.7 22.8 246 38-295 471-733 (840)
89 KOG3060 Uncharacterized conser 98.2 0.00076 1.7E-08 61.5 21.6 159 37-221 66-229 (289)
90 PRK14574 hmsH outer membrane p 98.2 0.00031 6.8E-09 76.0 22.7 188 30-242 41-228 (822)
91 PLN03077 Protein ECB2; Provisi 98.2 0.00028 6.1E-09 77.6 22.3 256 4-279 408-682 (857)
92 KOG1174 Anaphase-promoting com 98.2 0.0022 4.7E-08 62.4 25.1 206 22-249 231-469 (564)
93 PRK14574 hmsH outer membrane p 98.1 0.0038 8.3E-08 67.7 30.1 95 179-277 413-507 (822)
94 COG2956 Predicted N-acetylgluc 98.1 0.0047 1E-07 58.4 26.0 239 26-272 39-301 (389)
95 PLN03081 pentatricopeptide (PP 98.1 0.0016 3.4E-08 70.1 26.0 256 3-279 207-487 (697)
96 KOG1128 Uncharacterized conser 98.0 0.00014 3.1E-09 74.7 15.1 81 158-246 536-616 (777)
97 PLN03077 Protein ECB2; Provisi 98.0 0.0023 4.9E-08 70.5 25.9 254 4-279 373-650 (857)
98 TIGR02552 LcrH_SycD type III s 98.0 0.00037 7.9E-09 58.1 15.2 111 114-246 4-114 (135)
99 cd00189 TPR Tetratricopeptide 98.0 0.00018 4E-09 54.0 11.8 97 26-124 3-99 (100)
100 TIGR03302 OM_YfiO outer membra 98.0 0.0012 2.6E-08 60.6 19.2 174 4-215 52-235 (235)
101 PRK14720 transcript cleavage f 98.0 0.006 1.3E-07 66.1 26.6 233 19-278 27-282 (906)
102 KOG1156 N-terminal acetyltrans 97.9 0.0068 1.5E-07 62.0 25.2 233 35-274 53-324 (700)
103 KOG1128 Uncharacterized conser 97.9 0.00046 9.9E-09 71.2 17.1 114 162-279 499-612 (777)
104 PF12569 NARP1: NMDA receptor- 97.9 0.025 5.3E-07 58.3 29.6 65 180-245 190-256 (517)
105 cd05804 StaR_like StaR_like; a 97.9 0.0037 8E-08 61.1 22.7 205 53-279 2-211 (355)
106 COG2956 Predicted N-acetylgluc 97.9 0.023 4.9E-07 53.9 25.2 215 62-282 41-277 (389)
107 smart00386 HAT HAT (Half-A-TPR 97.8 2.6E-05 5.6E-10 47.9 4.1 32 37-68 1-32 (33)
108 KOG1156 N-terminal acetyltrans 97.8 0.0069 1.5E-07 62.0 23.0 221 37-269 21-265 (700)
109 PF13414 TPR_11: TPR repeat; P 97.8 0.00012 2.7E-09 53.5 7.9 67 23-89 3-69 (69)
110 PLN03088 SGT1, suppressor of 97.8 0.00058 1.3E-08 67.2 14.3 95 30-126 9-103 (356)
111 KOG1129 TPR repeat-containing 97.8 0.0042 9.1E-08 58.8 18.7 202 72-286 237-464 (478)
112 smart00386 HAT HAT (Half-A-TPR 97.8 4.7E-05 1E-09 46.7 4.2 31 198-228 2-32 (33)
113 PF13432 TPR_16: Tetratricopep 97.7 0.00017 3.6E-09 52.2 7.5 58 188-246 3-60 (65)
114 PF13414 TPR_11: TPR repeat; P 97.7 0.00027 5.8E-09 51.7 8.4 63 183-246 4-67 (69)
115 PRK15363 pathogenicity island 97.7 0.0011 2.3E-08 56.8 13.1 102 20-123 32-133 (157)
116 PF13432 TPR_16: Tetratricopep 97.7 0.00019 4.2E-09 51.9 7.3 61 30-91 4-64 (65)
117 PRK14720 transcript cleavage f 97.7 0.0017 3.6E-08 70.2 17.0 179 45-266 17-201 (906)
118 PF02184 HAT: HAT (Half-A-TPR) 97.7 5.7E-05 1.2E-09 45.9 3.2 30 198-228 2-31 (32)
119 COG5010 TadD Flp pilus assembl 97.6 0.0041 9E-08 57.1 16.5 177 42-243 52-228 (257)
120 PF14559 TPR_19: Tetratricopep 97.6 0.00025 5.4E-09 51.6 6.3 65 34-99 2-66 (68)
121 PF14559 TPR_19: Tetratricopep 97.5 0.00047 1E-08 50.2 7.4 63 194-260 3-65 (68)
122 PF08311 Mad3_BUB1_I: Mad3/BUB 97.5 0.002 4.3E-08 53.6 11.7 79 159-244 44-126 (126)
123 KOG0624 dsRNA-activated protei 97.5 0.1 2.2E-06 50.0 24.8 239 20-274 35-277 (504)
124 KOG4162 Predicted calmodulin-b 97.5 0.061 1.3E-06 56.3 24.5 235 5-246 464-783 (799)
125 PF13428 TPR_14: Tetratricopep 97.5 0.00041 8.8E-09 46.2 5.7 42 24-65 2-43 (44)
126 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0054 1.2E-07 49.3 13.5 99 25-125 4-108 (119)
127 PLN03088 SGT1, suppressor of 97.4 0.0017 3.6E-08 64.0 12.3 87 155-250 16-102 (356)
128 KOG1840 Kinesin light chain [C 97.4 0.023 4.9E-07 58.2 20.5 164 72-246 213-396 (508)
129 PRK10153 DNA-binding transcrip 97.4 0.017 3.7E-07 59.6 19.7 89 183-278 421-509 (517)
130 PF13428 TPR_14: Tetratricopep 97.4 0.00044 9.6E-09 46.0 5.4 42 183-225 2-43 (44)
131 KOG0553 TPR repeat-containing 97.4 0.0018 4E-08 60.5 11.1 91 33-125 91-181 (304)
132 COG5010 TadD Flp pilus assembl 97.3 0.04 8.7E-07 50.7 18.8 63 182-245 134-196 (257)
133 KOG1174 Anaphase-promoting com 97.3 0.091 2E-06 51.5 21.9 218 38-270 213-457 (564)
134 PF13371 TPR_9: Tetratricopept 97.3 0.0014 3.1E-08 48.3 7.9 55 191-246 4-58 (73)
135 PRK02603 photosystem I assembl 97.3 0.014 2.9E-07 51.1 15.3 94 8-102 19-116 (172)
136 cd00189 TPR Tetratricopeptide 97.2 0.0069 1.5E-07 45.1 11.4 84 185-272 3-86 (100)
137 KOG4162 Predicted calmodulin-b 97.2 0.29 6.2E-06 51.5 25.8 234 23-273 323-566 (799)
138 PF02184 HAT: HAT (Half-A-TPR) 97.2 0.00037 7.9E-09 42.5 3.0 30 38-68 2-31 (32)
139 PF13371 TPR_9: Tetratricopept 97.2 0.002 4.3E-08 47.5 7.6 60 34-94 6-65 (73)
140 COG4235 Cytochrome c biogenesi 97.2 0.014 3.1E-07 54.8 14.7 86 39-125 138-225 (287)
141 COG4235 Cytochrome c biogenesi 97.1 0.012 2.6E-07 55.2 13.6 113 7-125 144-259 (287)
142 KOG2003 TPR repeat-containing 97.1 0.26 5.5E-06 48.9 22.9 187 6-223 511-700 (840)
143 PF14938 SNAP: Soluble NSF att 97.1 0.082 1.8E-06 50.2 19.4 212 38-279 30-259 (282)
144 KOG1127 TPR repeat-containing 97.0 0.046 1E-06 58.7 18.0 73 172-245 586-658 (1238)
145 COG4783 Putative Zn-dependent 97.0 0.11 2.4E-06 51.8 19.7 89 34-124 317-405 (484)
146 KOG0624 dsRNA-activated protei 97.0 0.17 3.7E-06 48.5 20.0 252 4-280 50-330 (504)
147 PRK15363 pathogenicity island 97.0 0.008 1.7E-07 51.5 10.2 63 182-245 69-131 (157)
148 PRK11906 transcriptional regul 96.9 0.086 1.9E-06 52.7 18.2 168 87-268 243-422 (458)
149 PF12895 Apc3: Anaphase-promot 96.9 0.0057 1.2E-07 46.6 8.0 81 156-243 4-84 (84)
150 CHL00033 ycf3 photosystem I as 96.9 0.027 5.8E-07 49.0 13.1 98 22-120 34-140 (168)
151 COG4783 Putative Zn-dependent 96.9 0.027 5.9E-07 56.0 14.0 112 4-121 325-436 (484)
152 PF12569 NARP1: NMDA receptor- 96.9 0.73 1.6E-05 47.6 27.8 221 22-245 37-290 (517)
153 smart00777 Mad3_BUB1_I Mad3/BU 96.8 0.029 6.3E-07 46.3 11.8 60 177-243 64-125 (125)
154 KOG1127 TPR repeat-containing 96.8 0.2 4.2E-06 54.2 20.6 92 33-124 12-105 (1238)
155 PF12895 Apc3: Anaphase-promot 96.8 0.0051 1.1E-07 46.9 6.9 81 36-119 2-84 (84)
156 PRK10153 DNA-binding transcrip 96.8 0.14 3E-06 53.0 19.2 77 156-244 435-512 (517)
157 TIGR02795 tol_pal_ybgF tol-pal 96.7 0.018 3.9E-07 46.2 10.1 90 155-250 16-108 (119)
158 KOG3785 Uncharacterized conser 96.7 0.15 3.2E-06 49.1 16.9 176 35-217 34-219 (557)
159 PF09976 TPR_21: Tetratricopep 96.6 0.063 1.4E-06 45.5 13.3 53 36-89 24-79 (145)
160 PF14938 SNAP: Soluble NSF att 96.6 0.15 3.3E-06 48.4 16.7 179 73-280 30-222 (282)
161 PRK11906 transcriptional regul 96.5 0.12 2.5E-06 51.7 15.8 129 4-135 277-415 (458)
162 PF09976 TPR_21: Tetratricopep 96.5 0.26 5.6E-06 41.6 16.0 59 184-244 87-145 (145)
163 PF09295 ChAPs: ChAPs (Chs5p-A 96.5 0.066 1.4E-06 53.2 13.9 57 188-245 206-262 (395)
164 PRK10803 tol-pal system protei 96.5 0.046 1E-06 51.4 12.1 64 186-251 184-250 (263)
165 PRK10803 tol-pal system protei 96.4 0.074 1.6E-06 50.0 13.3 92 32-125 152-249 (263)
166 PF13424 TPR_12: Tetratricopep 96.4 0.028 6.1E-07 41.9 8.6 64 181-245 4-74 (78)
167 KOG0553 TPR repeat-containing 96.4 0.05 1.1E-06 51.1 11.5 84 155-246 95-178 (304)
168 PRK02603 photosystem I assembl 96.4 0.26 5.7E-06 42.9 15.7 48 184-232 74-121 (172)
169 PF09295 ChAPs: ChAPs (Chs5p-A 96.3 0.089 1.9E-06 52.3 13.5 77 36-114 213-289 (395)
170 PF12688 TPR_5: Tetratrico pep 96.3 0.18 3.8E-06 41.4 13.0 90 30-121 8-103 (120)
171 PF04733 Coatomer_E: Coatomer 96.1 0.23 4.9E-06 47.5 15.1 91 183-277 168-259 (290)
172 KOG3617 WD40 and TPR repeat-co 96.0 2.8 6.1E-05 44.9 23.6 99 188-289 1027-1177(1416)
173 PF13431 TPR_17: Tetratricopep 96.0 0.0079 1.7E-07 37.6 2.9 33 205-237 1-33 (34)
174 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.055 1.2E-06 54.0 8.9 68 178-246 71-141 (453)
175 COG4785 NlpI Lipoprotein NlpI, 95.7 0.92 2E-05 41.0 15.5 113 10-124 52-164 (297)
176 PF12688 TPR_5: Tetratrico pep 95.5 0.54 1.2E-05 38.6 12.9 62 183-245 39-103 (120)
177 PF06552 TOM20_plant: Plant sp 95.5 0.28 6E-06 43.0 11.4 87 4-91 10-113 (186)
178 CHL00033 ycf3 photosystem I as 95.5 0.19 4E-06 43.6 10.7 83 156-243 50-139 (168)
179 PF13431 TPR_17: Tetratricopep 95.3 0.019 4.2E-07 35.8 2.7 25 46-70 2-26 (34)
180 KOG0548 Molecular co-chaperone 95.2 4.2 9.2E-05 41.3 22.4 209 38-262 239-468 (539)
181 PF13512 TPR_18: Tetratricopep 95.1 0.25 5.4E-06 41.6 9.9 93 30-125 17-131 (142)
182 PLN03098 LPA1 LOW PSII ACCUMUL 95.1 0.1 2.2E-06 52.2 8.7 68 19-87 71-141 (453)
183 PF03704 BTAD: Bacterial trans 95.1 0.46 9.9E-06 40.0 11.7 61 59-121 64-124 (146)
184 PF13525 YfiO: Outer membrane 95.1 2.4 5.2E-05 38.0 21.1 60 30-92 12-76 (203)
185 KOG0548 Molecular co-chaperone 94.9 2.4 5.2E-05 43.0 17.5 117 106-244 371-487 (539)
186 KOG0550 Molecular chaperone (D 94.7 0.98 2.1E-05 44.5 13.9 160 72-246 183-350 (486)
187 PRK15331 chaperone protein Sic 94.7 0.72 1.6E-05 39.9 11.7 101 20-122 34-134 (165)
188 PRK10866 outer membrane biogen 94.5 4 8.7E-05 37.8 23.6 59 31-92 40-103 (243)
189 PRK15331 chaperone protein Sic 94.5 2.7 5.8E-05 36.4 14.6 91 187-281 42-132 (165)
190 PF03704 BTAD: Bacterial trans 94.5 0.34 7.4E-06 40.8 9.3 61 184-245 64-124 (146)
191 PF04733 Coatomer_E: Coatomer 94.2 1.1 2.3E-05 42.9 13.1 138 105-266 143-281 (290)
192 PF06552 TOM20_plant: Plant sp 94.0 0.63 1.4E-05 40.8 10.0 82 40-121 8-101 (186)
193 KOG0550 Molecular chaperone (D 93.9 3.2 6.9E-05 41.0 15.6 87 159-246 221-316 (486)
194 PF07719 TPR_2: Tetratricopept 93.3 0.23 4.9E-06 30.2 4.6 31 184-215 3-33 (34)
195 PRK04841 transcriptional regul 93.0 18 0.00038 40.2 26.6 61 185-246 694-760 (903)
196 KOG0543 FKBP-type peptidyl-pro 92.8 3.6 7.9E-05 40.5 14.1 83 163-246 272-355 (397)
197 KOG3824 Huntingtin interacting 92.7 0.23 5E-06 46.9 5.6 63 34-97 127-189 (472)
198 KOG4555 TPR repeat-containing 92.6 1.6 3.4E-05 36.3 9.6 88 36-125 56-147 (175)
199 KOG3617 WD40 and TPR repeat-co 92.4 18 0.0004 39.1 22.9 186 35-243 812-1048(1416)
200 PF13512 TPR_18: Tetratricopep 92.4 2.3 5.1E-05 35.8 10.8 53 4-58 29-82 (142)
201 KOG3081 Vesicle coat complex C 92.2 10 0.00022 35.5 15.6 183 59-269 74-256 (299)
202 COG1729 Uncharacterized protei 92.1 1.7 3.8E-05 40.5 10.5 67 182-252 180-249 (262)
203 KOG0543 FKBP-type peptidyl-pro 92.0 2 4.3E-05 42.3 11.2 96 25-121 259-354 (397)
204 PF07719 TPR_2: Tetratricopept 91.9 0.47 1E-05 28.7 4.7 31 25-55 3-33 (34)
205 PF13181 TPR_8: Tetratricopept 91.9 0.47 1E-05 28.8 4.7 32 183-215 2-33 (34)
206 KOG4555 TPR repeat-containing 91.7 3.5 7.5E-05 34.4 10.6 79 193-274 54-135 (175)
207 PF13424 TPR_12: Tetratricopep 91.6 0.75 1.6E-05 34.0 6.3 57 155-213 19-76 (78)
208 COG3071 HemY Uncharacterized e 91.5 15 0.00033 36.1 23.5 44 22-65 152-195 (400)
209 COG1729 Uncharacterized protei 91.3 3 6.5E-05 38.9 11.2 107 94-219 144-251 (262)
210 PRK04841 transcriptional regul 91.2 28 0.00061 38.6 26.3 198 34-245 420-640 (903)
211 PRK10866 outer membrane biogen 90.8 14 0.0003 34.3 18.5 55 3-59 50-105 (243)
212 COG3071 HemY Uncharacterized e 90.7 18 0.00039 35.6 28.9 232 33-275 128-382 (400)
213 KOG3824 Huntingtin interacting 90.6 0.89 1.9E-05 43.1 7.0 52 194-246 128-179 (472)
214 PF00515 TPR_1: Tetratricopept 90.6 0.86 1.9E-05 27.7 5.0 31 184-215 3-33 (34)
215 KOG2376 Signal recognition par 90.5 24 0.00052 36.6 21.8 68 180-248 173-255 (652)
216 COG0457 NrfG FOG: TPR repeat [ 89.2 13 0.00028 31.6 23.7 193 30-245 66-264 (291)
217 PF13525 YfiO: Outer membrane 88.5 15 0.00033 32.8 13.4 92 155-252 19-124 (203)
218 PF13174 TPR_6: Tetratricopept 88.4 0.98 2.1E-05 27.0 3.9 28 188-216 6-33 (33)
219 PF00515 TPR_1: Tetratricopept 88.3 1 2.2E-05 27.4 4.0 31 25-55 3-33 (34)
220 KOG4234 TPR repeat-containing 88.1 5.5 0.00012 35.7 9.6 90 34-125 106-200 (271)
221 COG4700 Uncharacterized protei 88.0 19 0.00041 32.1 17.0 135 106-264 102-241 (251)
222 PF04184 ST7: ST7 protein; In 86.0 12 0.00027 38.0 11.9 138 73-244 183-322 (539)
223 COG4785 NlpI Lipoprotein NlpI, 85.6 29 0.00062 31.7 19.7 71 38-125 61-131 (297)
224 KOG4642 Chaperone-dependent E3 84.7 5.2 0.00011 36.8 7.9 81 39-121 26-106 (284)
225 PF13174 TPR_6: Tetratricopept 84.6 1.8 3.8E-05 25.8 3.6 21 36-56 13-33 (33)
226 PF13176 TPR_7: Tetratricopept 84.3 2.4 5.1E-05 26.4 4.2 27 185-212 2-28 (36)
227 PF13181 TPR_8: Tetratricopept 83.1 2.5 5.3E-05 25.5 3.8 30 25-54 3-32 (34)
228 PF10602 RPN7: 26S proteasome 82.1 6.7 0.00015 34.5 7.6 63 182-245 36-101 (177)
229 KOG2053 Mitochondrial inherita 81.0 91 0.002 34.1 26.3 74 23-100 45-118 (932)
230 PF13176 TPR_7: Tetratricopept 80.8 3.4 7.3E-05 25.7 3.9 26 220-245 2-27 (36)
231 KOG4234 TPR repeat-containing 78.9 50 0.0011 29.8 12.6 97 105-219 107-204 (271)
232 PF10602 RPN7: 26S proteasome 78.9 8.9 0.00019 33.7 7.3 63 218-280 37-99 (177)
233 PF02259 FAT: FAT domain; Int 78.3 65 0.0014 30.9 17.7 48 182-230 252-305 (352)
234 TIGR02996 rpt_mate_G_obs repea 77.4 5.1 0.00011 26.1 3.8 33 204-236 3-35 (42)
235 TIGR02996 rpt_mate_G_obs repea 76.9 4.7 0.0001 26.3 3.6 27 45-71 4-30 (42)
236 KOG0121 Nuclear cap-binding pr 76.8 0.71 1.5E-05 37.9 -0.3 18 388-405 33-50 (153)
237 smart00028 TPR Tetratricopepti 76.7 5.2 0.00011 22.3 3.8 28 186-214 5-32 (34)
238 KOG4648 Uncharacterized conser 76.6 9.4 0.0002 37.0 7.0 88 35-125 109-197 (536)
239 PF10300 DUF3808: Protein of u 75.8 99 0.0022 31.7 18.3 85 37-122 202-296 (468)
240 KOG0890 Protein kinase of the 75.6 2E+02 0.0044 35.2 22.2 232 20-263 1667-1936(2382)
241 smart00028 TPR Tetratricopepti 75.4 6 0.00013 22.0 3.8 30 26-55 4-33 (34)
242 KOG1166 Mitotic checkpoint ser 75.2 32 0.00069 38.4 11.6 71 198-270 93-165 (974)
243 KOG4642 Chaperone-dependent E3 71.7 31 0.00067 31.9 8.8 67 178-245 40-106 (284)
244 COG4700 Uncharacterized protei 71.4 76 0.0017 28.4 16.9 112 23-136 89-204 (251)
245 KOG3785 Uncharacterized conser 71.1 11 0.00024 36.6 6.1 82 160-244 34-118 (557)
246 KOG1972 Uncharacterized conser 70.7 7.1 0.00015 41.8 5.1 49 53-102 832-880 (913)
247 KOG1166 Mitotic checkpoint ser 69.6 1.2E+02 0.0025 34.2 14.2 98 22-122 33-143 (974)
248 COG3629 DnrI DNA-binding trans 68.5 63 0.0014 30.6 10.6 51 33-84 163-213 (280)
249 COG3898 Uncharacterized membra 67.1 1.4E+02 0.0031 29.8 16.9 83 36-121 133-216 (531)
250 PRK10941 hypothetical protein; 66.9 67 0.0014 30.3 10.5 70 191-262 190-259 (269)
251 PF15297 CKAP2_C: Cytoskeleton 66.3 36 0.00078 33.1 8.5 57 73-130 118-177 (353)
252 KOG1585 Protein required for f 65.2 1.2E+02 0.0026 28.3 17.6 117 157-276 126-249 (308)
253 COG3629 DnrI DNA-binding trans 65.2 1.1E+02 0.0025 28.9 11.5 61 184-245 155-215 (280)
254 PF08640 U3_assoc_6: U3 small 64.1 8.9 0.00019 29.2 3.3 31 2-36 26-56 (83)
255 PF02259 FAT: FAT domain; Int 63.2 1.4E+02 0.0031 28.5 14.2 104 21-125 144-290 (352)
256 COG4976 Predicted methyltransf 63.1 11 0.00023 34.6 4.1 57 34-91 6-62 (287)
257 KOG1308 Hsp70-interacting prot 62.9 3.7 8.1E-05 39.6 1.2 87 35-125 126-214 (377)
258 PRK10941 hypothetical protein; 62.0 35 0.00075 32.2 7.6 53 37-90 195-247 (269)
259 PF00244 14-3-3: 14-3-3 protei 61.5 1.3E+02 0.0029 27.6 11.4 55 158-212 143-198 (236)
260 KOG1308 Hsp70-interacting prot 59.3 8.9 0.00019 37.1 3.1 80 164-246 130-211 (377)
261 COG4976 Predicted methyltransf 59.0 14 0.00031 33.8 4.1 55 191-246 4-58 (287)
262 PF15297 CKAP2_C: Cytoskeleton 56.9 57 0.0012 31.8 8.1 48 199-246 119-169 (353)
263 KOG2796 Uncharacterized conser 55.4 1.9E+02 0.0041 27.4 19.5 63 55-118 167-237 (366)
264 KOG0127 Nucleolar protein fibr 55.2 10 0.00023 38.6 2.9 21 385-405 286-306 (678)
265 KOG0529 Protein geranylgeranyl 55.0 1.5E+02 0.0033 29.6 10.7 95 41-135 93-193 (421)
266 KOG4648 Uncharacterized conser 51.7 1.4E+02 0.0029 29.4 9.5 33 193-226 176-208 (536)
267 PF13374 TPR_10: Tetratricopep 51.6 44 0.00096 20.5 4.7 25 187-212 7-31 (42)
268 PF13374 TPR_10: Tetratricopep 50.8 42 0.00092 20.6 4.5 28 219-246 4-31 (42)
269 PF10579 Rapsyn_N: Rapsyn N-te 49.8 81 0.0018 23.8 6.2 48 198-245 21-68 (80)
270 KOG0890 Protein kinase of the 48.8 6.2E+02 0.013 31.4 22.2 212 23-246 1702-1957(2382)
271 COG3947 Response regulator con 47.1 82 0.0018 30.1 7.2 54 189-243 286-339 (361)
272 TIGR01659 sex-lethal sex-letha 46.7 11 0.00025 36.8 1.7 21 385-405 101-121 (346)
273 COG3947 Response regulator con 42.9 99 0.0021 29.6 7.0 67 40-118 272-338 (361)
274 PF04910 Tcf25: Transcriptiona 42.3 3.5E+02 0.0075 26.7 11.5 35 51-86 34-68 (360)
275 PLN03134 glycine-rich RNA-bind 40.7 15 0.00032 31.1 1.3 18 388-405 31-48 (144)
276 PF10300 DUF3808: Protein of u 38.2 4.6E+02 0.0099 26.8 21.4 172 78-270 177-356 (468)
277 PF12862 Apc5: Anaphase-promot 37.8 1.8E+02 0.0039 22.2 7.0 49 198-246 13-70 (94)
278 PF01535 PPR: PPR repeat; Int 37.6 60 0.0013 18.3 3.4 26 220-245 3-28 (31)
279 KOG0529 Protein geranylgeranyl 37.5 4.3E+02 0.0093 26.5 10.8 119 8-131 98-235 (421)
280 PF13041 PPR_2: PPR repeat fam 37.4 92 0.002 20.4 4.7 30 219-248 5-34 (50)
281 PF14853 Fis1_TPR_C: Fis1 C-te 37.1 1.3E+02 0.0027 20.7 5.2 26 192-218 11-36 (53)
282 PF12854 PPR_1: PPR repeat 37.0 79 0.0017 19.1 3.9 24 184-208 9-32 (34)
283 KOG1586 Protein required for f 36.6 3.6E+02 0.0077 25.1 17.0 54 192-246 124-183 (288)
284 COG3118 Thioredoxin domain-con 36.5 1.4E+02 0.0031 28.4 7.2 78 194-274 146-223 (304)
285 TIGR03504 FimV_Cterm FimV C-te 36.2 71 0.0015 21.0 3.7 23 188-211 5-27 (44)
286 PF14561 TPR_20: Tetratricopep 35.4 2E+02 0.0044 22.0 9.1 45 44-89 9-53 (90)
287 cd02684 MIT_2 MIT: domain cont 35.1 1.6E+02 0.0035 21.7 6.0 17 229-245 18-34 (75)
288 PF07721 TPR_4: Tetratricopept 34.2 72 0.0016 17.9 3.2 21 186-207 5-25 (26)
289 KOG2610 Uncharacterized conser 34.1 4.7E+02 0.01 25.8 14.0 88 37-126 117-208 (491)
290 PF13281 DUF4071: Domain of un 33.9 4.8E+02 0.01 25.9 20.0 177 55-246 139-334 (374)
291 TIGR00756 PPR pentatricopeptid 33.2 99 0.0021 17.7 4.4 27 220-246 3-29 (35)
292 COG0457 NrfG FOG: TPR repeat [ 32.7 2.8E+02 0.0062 22.8 24.7 188 37-246 37-231 (291)
293 PF13929 mRNA_stabil: mRNA sta 32.1 1.7E+02 0.0036 28.0 6.8 61 183-244 203-265 (292)
294 PF13041 PPR_2: PPR repeat fam 31.0 1.5E+02 0.0032 19.3 4.9 28 184-212 5-32 (50)
295 KOG1130 Predicted G-alpha GTPa 30.9 5.8E+02 0.013 25.9 18.2 87 158-245 165-263 (639)
296 COG4105 ComL DNA uptake lipopr 30.3 4.6E+02 0.0099 24.5 18.5 50 188-238 173-225 (254)
297 COG3898 Uncharacterized membra 29.9 5.9E+02 0.013 25.6 21.5 50 73-125 135-186 (531)
298 PF10373 EST1_DNA_bind: Est1 D 29.1 1.4E+02 0.003 27.5 6.1 42 79-121 3-44 (278)
299 cd02677 MIT_SNX15 MIT: domain 28.5 2E+02 0.0043 21.3 5.5 15 231-245 20-34 (75)
300 PF04781 DUF627: Protein of un 28.1 3.2E+02 0.007 22.0 7.6 65 35-99 8-85 (111)
301 KOG2376 Signal recognition par 27.8 7.5E+02 0.016 26.2 26.0 109 164-273 357-477 (652)
302 KOG2114 Vacuolar assembly/sort 26.8 7.1E+02 0.015 27.5 11.0 52 160-212 346-397 (933)
303 KOG0545 Aryl-hydrocarbon recep 26.4 5.5E+02 0.012 24.1 8.9 47 77-124 249-295 (329)
304 PF04781 DUF627: Protein of un 26.0 3.5E+02 0.0077 21.8 9.8 82 194-282 8-103 (111)
305 KOG0376 Serine-threonine phosp 25.9 1.1E+02 0.0023 31.2 4.7 89 36-126 17-105 (476)
306 PF11846 DUF3366: Domain of un 25.7 2.6E+02 0.0057 24.4 6.9 48 200-249 128-175 (193)
307 PF15387 DUF4611: Domain of un 25.3 2.2E+02 0.0047 22.1 5.1 12 325-336 85-96 (96)
308 KOG0687 26S proteasome regulat 24.6 6.7E+02 0.015 24.5 10.3 60 218-277 105-164 (393)
309 KOG3807 Predicted membrane pro 24.4 6.8E+02 0.015 24.5 12.9 44 78-124 204-247 (556)
310 TIGR01622 SF-CC1 splicing fact 23.9 48 0.001 33.5 1.9 20 386-405 84-103 (457)
311 KOG2041 WD40 repeat protein [G 23.8 9.7E+02 0.021 26.1 17.1 37 207-243 842-878 (1189)
312 PF08640 U3_assoc_6: U3 small 23.8 1.4E+02 0.003 22.7 4.0 35 198-232 24-58 (83)
313 COG0724 RNA-binding proteins ( 23.8 37 0.00079 30.7 1.0 15 391-405 115-129 (306)
314 KOG0545 Aryl-hydrocarbon recep 22.6 6.5E+02 0.014 23.7 9.5 89 155-244 192-291 (329)
315 KOG1811 Predicted Zn2+-binding 22.5 5.3E+02 0.012 27.4 8.8 64 181-245 586-652 (1141)
316 KOG1920 IkappaB kinase complex 22.4 1.2E+03 0.027 26.9 18.6 64 75-146 890-954 (1265)
317 PF12583 TPPII_N: Tripeptidyl 22.3 1.2E+02 0.0026 25.3 3.5 32 198-229 91-122 (139)
318 PF09986 DUF2225: Uncharacteri 21.7 6E+02 0.013 22.9 11.2 63 183-246 119-194 (214)
319 KOG3364 Membrane protein invol 21.4 4.8E+02 0.01 22.1 6.9 60 187-246 39-100 (149)
320 PRK15490 Vi polysaccharide bio 21.1 5.3E+02 0.011 27.3 8.8 53 187-242 47-99 (578)
321 cd02683 MIT_1 MIT: domain cont 20.9 2.2E+02 0.0048 21.1 4.5 17 229-245 18-34 (77)
322 KOG0376 Serine-threonine phosp 20.5 1.4E+02 0.0031 30.3 4.3 66 179-245 35-100 (476)
No 1
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=9e-34 Score=285.81 Aligned_cols=373 Identities=31% Similarity=0.481 Sum_probs=274.0
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHH
Q 015472 7 HLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATK 86 (406)
Q Consensus 7 ~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~ 86 (406)
.||..+...+ ...+.|+.||+||+..|++.++..+|||++..++.+.++|+.|..|+...++.++.+..+|-||++
T Consensus 300 ~~e~~~q~~~----~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R 375 (881)
T KOG0128|consen 300 KFERLVQKEP----IKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVR 375 (881)
T ss_pred HHHHHhhhhH----HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhc
Confidence 4555555544 468899999999999999999999999999999999999999999999888889999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHH
Q 015472 87 NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQR 166 (406)
Q Consensus 87 ~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~ 166 (406)
+|||.+.||..|+..|++.......+-..+.+++..+.. ++ .+++.+|...... ....+++.+|.+|+.
T Consensus 376 ~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~-------l~---~~~~~~rr~~~~~-~~s~~~s~lr~~F~~ 444 (881)
T KOG0128|consen 376 SCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVE-------LH---NDYLAYRRRCTNI-IDSQDYSSLRAAFNH 444 (881)
T ss_pred CCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHH-------HH---HHHHHHHHhhccc-chhhhHHHHHHHHHH
Confidence 999999999999999998888888899999988876442 11 1222211111111 123567889999999
Q ss_pred HHHHHhhhhcC-CchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHH-HHHHHHHHHHHcccHHHHHHHHHHHH
Q 015472 167 ASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE-AWQSYISMEIELDHINEARSIYKRCY 244 (406)
Q Consensus 167 a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~-lW~~y~~~E~~~g~~~~ar~l~~ral 244 (406)
|..+|...+.. .++.+.+...||++|..++++++.+|.||...+...+.+.. .|+.|+++|..+|+...||.++.+|+
T Consensus 445 A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay 524 (881)
T KOG0128|consen 445 AWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAY 524 (881)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHH
Confidence 99999888877 78889999999999999988999999999999998666665 99999999999999999999999999
Q ss_pred hcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhhchhHHHHHHHHhhhhhccCCCchhhhhhhhhhcccccccCCCCc
Q 015472 245 SKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNI 324 (406)
Q Consensus 245 ~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~a~~k~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~krk~~~~~ 324 (406)
...+.......+++.|..||+++|+++.+..|..+.+||.....++++++++.... ++...+...+.++|.....
T Consensus 525 ~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~~~pr~~~~~~~~~e~~s~~v~-----p~~~~ke~~~~~~k~~~~v 599 (881)
T KOG0128|consen 525 SQVVDPEDALEVLEFFRRFEREYGTLESFDLCPEKVLPRVYEAPLERREKESTNVY-----PEQQKKEIQRRQFKGEGNV 599 (881)
T ss_pred hcCcCchhHHHHHHHHHHHHhccccHHHHhhhHHhhcchhhhhhhhhhhhcccCCC-----cchhhHHhhHHHhhccccc
Confidence 86554444678999999999999999999999999999999888887777654322 1112221222233333222
Q ss_pred cccCCcccccccCCCCC-----cccchhhHHHHhhhhhh-hhccccc-cccccCCCCCCcccCCCCCCCCCCCccceeee
Q 015472 325 SYEQSPAKRQKHAPQKP-----KKVHDKEKRQVQNLAEE-NEGRETK-QTVEEQPKKQPIKDAVPGRTKGFTDECTAFLS 397 (406)
Q Consensus 325 ~~~~~~~k~~k~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 397 (406)
..-.-|.++.|.-.+.- +...+.+. ..+ ..|..+. ...++..++.+..+..+..++.+++.||+|+|
T Consensus 600 ekv~~p~~g~k~h~q~~~~~~~s~~~~~es------at~pa~~~~a~~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvs 673 (881)
T KOG0128|consen 600 EKVNGPKRGFKAHEQPQQQKVQSKHGSAES------ATVPAGGALANRSAAVGLADAEEKEENFKVSPNEIRDLIKIFVS 673 (881)
T ss_pred ccccCccccccccccchhhhhhccccchhh------cccccccccCCccccCCCCCchhhhhccCcCchHHHHHHHHHHh
Confidence 22122222333321100 00111101 111 1111111 12112211113347788899999999999999
Q ss_pred cccccccC
Q 015472 398 NINLKASH 405 (406)
Q Consensus 398 n~~~~~~~ 405 (406)
||++.+.+
T Consensus 674 nl~~~~~~ 681 (881)
T KOG0128|consen 674 NLSPKMSE 681 (881)
T ss_pred hcchhhcC
Confidence 99998764
No 2
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.1e-32 Score=260.98 Aligned_cols=243 Identities=23% Similarity=0.398 Sum_probs=216.7
Q ss_pred hhhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHH
Q 015472 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (406)
Q Consensus 3 ~~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vye 82 (406)
.+|+.||..|.++.. +++.|+.|++||.+++++.+|+.+|||||..+..+..||+.|+.+.++. +....|+.+++
T Consensus 57 RkRkefEd~irrnR~----~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emkn-k~vNhARNv~d 131 (677)
T KOG1915|consen 57 RKRKEFEDQIRRNRL----NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKN-KQVNHARNVWD 131 (677)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhh-hhHhHHHHHHH
Confidence 578999999999973 6899999999999999999999999999999999999999999999864 57789999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccc--cHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHH
Q 015472 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLI 160 (406)
Q Consensus 83 rA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~--~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~ 160 (406)
||++..|....||..|+. +|...|++..||+||++.+...|+ .|..|+++.+.+ .+++.+
T Consensus 132 RAvt~lPRVdqlWyKY~y-mEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRy-----------------keiera 193 (677)
T KOG1915|consen 132 RAVTILPRVDQLWYKYIY-MEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRY-----------------KEIERA 193 (677)
T ss_pred HHHHhcchHHHHHHHHHH-HHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh-----------------hHHHHH
Confidence 999999999999999996 777899999999999999998886 466677776554 344578
Q ss_pred HHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchH---HHHHHHHHHHHHcccHHHHH
Q 015472 161 RETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAML---EAWQSYISMEIELDHINEAR 237 (406)
Q Consensus 161 r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~---~lW~~y~~~E~~~g~~~~ar 237 (406)
|++|++-+-. .+.+..|+.||+||..+| ++..||.+|++|+...++.. .+..+|+.||..+..+++||
T Consensus 194 R~IYerfV~~--------HP~v~~wikyarFE~k~g-~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar 264 (677)
T KOG1915|consen 194 RSIYERFVLV--------HPKVSNWIKYARFEEKHG-NVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERAR 264 (677)
T ss_pred HHHHHHHhee--------cccHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888875432 345789999999999999 99999999999999988753 49999999999999999999
Q ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHH
Q 015472 238 SIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQ 278 (406)
Q Consensus 238 ~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~a~~ 278 (406)
.||+-||. ++|......|+..|+.||..||+...|++++-
T Consensus 265 ~iykyAld-~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 265 FIYKYALD-HIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHH-hcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 99999999 68888889999999999999999999999763
No 3
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.1e-30 Score=249.27 Aligned_cols=289 Identities=24% Similarity=0.391 Sum_probs=229.1
Q ss_pred hhhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHH--------HHHHHHHHhcCCCCHHHHHHHHHHHHHhcchh
Q 015472 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRV--------QLLYERAITDFPVSSDLWLDYTQYLDKTLKVG 74 (406)
Q Consensus 3 ~~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~--------~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~ 74 (406)
.+|-.|..+|-.-|.+. ...++..|..||++.|+...+ +.-||..|..+|.+.+.|.+|+..+++. ++.
T Consensus 262 Rar~iykyAld~~pk~r--aeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~-g~~ 338 (677)
T KOG1915|consen 262 RARFIYKYALDHIPKGR--AEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESV-GDK 338 (677)
T ss_pred HHHHHHHHHHHhcCccc--HHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhc-CCH
Confidence 36778888888877432 355899999999999987543 4679999999999999999999999876 478
Q ss_pred hhHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHccCCHHHHHHHHHHHHhCcc------ccHHHHHHHHHHHHH
Q 015472 75 NVVRDVYSRATKNCPWVG---------ELWVRSLLSLERSRASEEEISTVFEKSLLCAF------STFEEYLDLFLTRID 139 (406)
Q Consensus 75 e~a~~vyerA~~~~P~~~---------~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~------~~~~~~~~l~~~~~~ 139 (406)
+.++.+|+||+.+.|... -||++|+.+.|....+++.+|++|+.||...| ..+|.++..|..++.
T Consensus 339 ~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~ 418 (677)
T KOG1915|consen 339 DRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQL 418 (677)
T ss_pred HHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHc
Confidence 999999999999998643 39999999888888999999999999998543 356777777776665
Q ss_pred HHH--HHHhc------ccc--chhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 015472 140 GLR--RRILF------SGE--VEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERL 209 (406)
Q Consensus 140 ~l~--Rr~~~------~~~--~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~a 209 (406)
.|. |++++ ++. .-.+++++.....|++|.....+.+.-.|.+|..|..||.+|..+| |.++||.||+-|
T Consensus 419 ~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lg-dtdRaRaifelA 497 (677)
T KOG1915|consen 419 NLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLG-DTDRARAIFELA 497 (677)
T ss_pred ccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhh-hHHHHHHHHHHH
Confidence 543 55543 111 1145666666777888877776666667888999999999999999 999999999999
Q ss_pred HHhcc-chHH-HHHHHHHHHHHcccHHHHHHHHHHHHhcc-----------cCC------CC------------------
Q 015472 210 LKISG-AMLE-AWQSYISMEIELDHINEARSIYKRCYSKR-----------FTG------TG------------------ 252 (406)
Q Consensus 210 l~~~~-~~~~-lW~~y~~~E~~~g~~~~ar~l~~ral~~~-----------~~~------~~------------------ 252 (406)
++... ++++ +|..||+||+..|.+++||++|+|.|... |.. .+
T Consensus 498 i~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~ 577 (677)
T KOG1915|consen 498 ISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARK 577 (677)
T ss_pred hcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHH
Confidence 99854 5565 99999999999999999999999999861 100 00
Q ss_pred -----------------hHHHHHHHHHHHHHhCCHHHHHHHHHhhchhHHHHHHHHhhhhhc
Q 015472 253 -----------------SEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESK 297 (406)
Q Consensus 253 -----------------~~~i~~~~i~fE~~~G~~e~~~~a~~k~~~~~~~~~~~r~~~~~~ 297 (406)
...|.++|.+||..||+..++.. |++.||+..+ +++..+.+.+
T Consensus 578 iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~-V~s~mPk~vK-Krr~~~~edG 637 (677)
T KOG1915|consen 578 IFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVER-VQSKMPKKVK-KRRKIQREDG 637 (677)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHH-HHHhccHHHH-hhhhhhcccC
Confidence 02688999999999999999886 8888888777 4444555555
No 4
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.89 E-value=4.8e-21 Score=201.89 Aligned_cols=243 Identities=19% Similarity=0.303 Sum_probs=187.9
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCC----HHHHHHHHHHHHHhcchhhhHHHH
Q 015472 6 AHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITD-FPVS----SDLWLDYTQYLDKTLKVGNVVRDV 80 (406)
Q Consensus 6 ~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~-~P~~----~~lW~~Y~~~l~~~~~~~e~a~~v 80 (406)
..||..+...|. ..-.|+.|+.|-.+.++++.|+.++||||.. ++.- ..+|+.|++++...+ ..+.+.++
T Consensus 1445 eDferlvrssPN----SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG-~eesl~kV 1519 (1710)
T KOG1070|consen 1445 EDFERLVRSSPN----SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG-TEESLKKV 1519 (1710)
T ss_pred HHHHHHHhcCCC----cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC-cHHHHHHH
Confidence 357777777763 2347888888888888888888888888865 3432 458888888876544 45678888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHH
Q 015472 81 YSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLI 160 (406)
Q Consensus 81 yerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~ 160 (406)
|+||++.|-. -.++..++..++. .+.+++|-++|+..++.-. .-..+|..|.++|-|+- +-+.+
T Consensus 1520 FeRAcqycd~-~~V~~~L~~iy~k-~ek~~~A~ell~~m~KKF~----q~~~vW~~y~~fLl~~n----------e~~aa 1583 (1710)
T KOG1070|consen 1520 FERACQYCDA-YTVHLKLLGIYEK-SEKNDEADELLRLMLKKFG----QTRKVWIMYADFLLRQN----------EAEAA 1583 (1710)
T ss_pred HHHHHHhcch-HHHHHHHHHHHHH-hhcchhHHHHHHHHHHHhc----chhhHHHHHHHHHhccc----------HHHHH
Confidence 8888887732 2466666655543 5667778888888776211 12345555555543321 22468
Q ss_pred HHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHH
Q 015472 161 RETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIY 240 (406)
Q Consensus 161 r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~ 240 (406)
+.+..+|++.+++ ..+..+...+|++|...| |.+++|.+|+..|..+|.-.++|..|+++|+.+|+.+.+|.+|
T Consensus 1584 ~~lL~rAL~~lPk-----~eHv~~IskfAqLEFk~G-DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lf 1657 (1710)
T KOG1070|consen 1584 RELLKRALKSLPK-----QEHVEFISKFAQLEFKYG-DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLF 1657 (1710)
T ss_pred HHHHHHHHhhcch-----hhhHHHHHHHHHHHhhcC-CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHH
Confidence 8999999998743 246789999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHH
Q 015472 241 KRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDH 275 (406)
Q Consensus 241 ~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~ 275 (406)
+|++...++...+..++..|++||..+||.+.++.
T Consensus 1658 eRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1658 ERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred HHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 99999888877889999999999999999999886
No 5
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.88 E-value=1.4e-20 Score=186.24 Aligned_cols=236 Identities=19% Similarity=0.205 Sum_probs=160.6
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHH
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyer 83 (406)
+|.+|-.+|+.+|. .-.+|..-+.||+++|..+....++++|+..+|.++.+|++|+.--+.. ++...++.++.+
T Consensus 535 arAVya~alqvfp~----k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~a-gdv~~ar~il~~ 609 (913)
T KOG0495|consen 535 ARAVYAHALQVFPC----KKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKA-GDVPAARVILDQ 609 (913)
T ss_pred HHHHHHHHHhhccc----hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhc-CCcHHHHHHHHH
Confidence 68889999999874 4568999999999999999999999999999999999999999876654 466779999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccc-cHH-HHHHHHHHHHHHHHHHHhccccchhhhhHHHHH
Q 015472 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS-TFE-EYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIR 161 (406)
Q Consensus 84 A~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~-~~~-~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r 161 (406)
|+..+|++.++|...+. +|..+..+++||.+|.+|....+. -+| -++.+. .+. ...+.++
T Consensus 610 af~~~pnseeiwlaavK-le~en~e~eraR~llakar~~sgTeRv~mKs~~~e-r~l----------------d~~eeA~ 671 (913)
T KOG0495|consen 610 AFEANPNSEEIWLAAVK-LEFENDELERARDLLAKARSISGTERVWMKSANLE-RYL----------------DNVEEAL 671 (913)
T ss_pred HHHhCCCcHHHHHHHHH-HhhccccHHHHHHHHHHHhccCCcchhhHHHhHHH-HHh----------------hhHHHHH
Confidence 99999999999999887 777788899999999999886553 222 222221 111 1112233
Q ss_pred HHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHH
Q 015472 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYK 241 (406)
Q Consensus 162 ~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ 241 (406)
...++|++. .|....+|+..++++...+ +++.||..|..+++.+|.++-+|+..+.+|...|++-+||.+++
T Consensus 672 rllEe~lk~-------fp~f~Kl~lmlGQi~e~~~-~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ild 743 (913)
T KOG0495|consen 672 RLLEEALKS-------FPDFHKLWLMLGQIEEQME-NIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILD 743 (913)
T ss_pred HHHHHHHHh-------CCchHHHHHHHhHHHHHHH-HHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHH
Confidence 333333332 2344455666666555555 56666666666666666655666666666555556666666666
Q ss_pred HHHhcccCCCChHHHHHHHHHHHHHhCCHHHH
Q 015472 242 RCYSKRFTGTGSEDICHAWLRFEREYGTLEDF 273 (406)
Q Consensus 242 ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~ 273 (406)
|+.-+ .+....+|..-|.||.+.|+.+..
T Consensus 744 rarlk---NPk~~~lwle~Ir~ElR~gn~~~a 772 (913)
T KOG0495|consen 744 RARLK---NPKNALLWLESIRMELRAGNKEQA 772 (913)
T ss_pred HHHhc---CCCcchhHHHHHHHHHHcCCHHHH
Confidence 65543 222345566666666666655543
No 6
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.88 E-value=2.5e-20 Score=184.23 Aligned_cols=232 Identities=19% Similarity=0.303 Sum_probs=179.8
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCC--CHHHHHHHH
Q 015472 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPW--VGELWVRSL 99 (406)
Q Consensus 22 ~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~--~~~lW~~y~ 99 (406)
.+.+|..|+++|.+.|.++..+.+|+|.|..---.|.+=++|+.||+.+ +-++.+.++|+|.+..+|| ..+||..|+
T Consensus 476 SlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh-~yfeesFk~YErgI~LFk~p~v~diW~tYL 554 (835)
T KOG2047|consen 476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEH-KYFEESFKAYERGISLFKWPNVYDIWNTYL 554 (835)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-HHHHHHHHHHHcCCccCCCccHHHHHHHHH
Confidence 3579999999999999999999999999999888999999999999864 4678999999999999965 568999999
Q ss_pred H-HHHHccC-CHHHHHHHHHHHHhCccc-cHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhc
Q 015472 100 L-SLERSRA-SEEEISTVFEKSLLCAFS-TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMK 176 (406)
Q Consensus 100 ~-~lE~~~~-~~e~ar~if~~al~~~~~-~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~ 176 (406)
. +..+.+| ..+.||.+|++||...|+ ... .+|+.+.... ++++-...+.++|++|......
T Consensus 555 tkfi~rygg~klEraRdLFEqaL~~Cpp~~aK---tiyLlYA~lE----------Ee~GLar~amsiyerat~~v~~--- 618 (835)
T KOG2047|consen 555 TKFIKRYGGTKLERARDLFEQALDGCPPEHAK---TIYLLYAKLE----------EEHGLARHAMSIYERATSAVKE--- 618 (835)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHH---HHHHHHHHHH----------HHhhHHHHHHHHHHHHHhcCCH---
Confidence 7 4444333 489999999999994443 221 1222221110 0111112345677777554321
Q ss_pred CCchHHHHHHHHHH-HHHHcCCCHHHHHHHHHHHHHhccch--HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCCh
Q 015472 177 NTDGLLRLYAYWAH-LEQSMGKDMVSARGVWERLLKISGAM--LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGS 253 (406)
Q Consensus 177 ~~~~~~~l~~~~a~-~e~~~~~d~~~Ar~ife~al~~~~~~--~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~ 253 (406)
...+.+|..|+. .....| +...|.||++|+...|++ -++++.|++||.+.|++++||.||..|.+ .+++...
T Consensus 619 --a~~l~myni~I~kaae~yG--v~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq-~~dPr~~ 693 (835)
T KOG2047|consen 619 --AQRLDMYNIYIKKAAEIYG--VPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ-ICDPRVT 693 (835)
T ss_pred --HHHHHHHHHHHHHHHHHhC--CcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh-cCCCcCC
Confidence 234677777765 344456 788999999999998874 47999999999999999999999999998 4676667
Q ss_pred HHHHHHHHHHHHHhCCHHHHHH
Q 015472 254 EDICHAWLRFEREYGTLEDFDH 275 (406)
Q Consensus 254 ~~i~~~~i~fE~~~G~~e~~~~ 275 (406)
..+|+.|-.||-.|||.+++..
T Consensus 694 ~~fW~twk~FEvrHGnedT~ke 715 (835)
T KOG2047|consen 694 TEFWDTWKEFEVRHGNEDTYKE 715 (835)
T ss_pred hHHHHHHHHHHHhcCCHHHHHH
Confidence 8999999999999999888766
No 7
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.85 E-value=5.6e-19 Score=175.13 Aligned_cols=282 Identities=22% Similarity=0.351 Sum_probs=211.7
Q ss_pred hhhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHH
Q 015472 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (406)
Q Consensus 3 ~~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vye 82 (406)
..|.+|-..|...|. +...|..|+++|.+.|+.+.+..+|||+|...|.|.++|+.|+.|+....++++.++..|+
T Consensus 63 ~~r~~y~~fL~kyPl----~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe 138 (577)
T KOG1258|consen 63 ALREVYDIFLSKYPL----CYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFE 138 (577)
T ss_pred HHHHHHHHHHhhCcc----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 368899999999884 7889999999999999999999999999999999999999999999887677788999999
Q ss_pred HHHHhCCC---CHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHH--------------HH---
Q 015472 83 RATKNCPW---VGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDG--------------LR--- 142 (406)
Q Consensus 83 rA~~~~P~---~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~--------------l~--- 142 (406)
+|+..+.. |..||-.|+. +|..+++...+-.+|++.|..|.-....++.-|...++. ++
T Consensus 139 ~A~~~vG~dF~S~~lWdkyie-~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~ 217 (577)
T KOG1258|consen 139 RAKSYVGLDFLSDPLWDKYIE-FENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDV 217 (577)
T ss_pred HHHHhcccchhccHHHHHHHH-HHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhH
Confidence 99998864 6789999998 556789999999999999998754444444444322221 00
Q ss_pred -HHHh--cccc-ch-------------hhhhH---------HHHHHHHHHHHHHH-----------hhhhcC---CchHH
Q 015472 143 -RRIL--FSGE-VE-------------GVLDY---------SLIRETFQRASDYL-----------SEQMKN---TDGLL 182 (406)
Q Consensus 143 -Rr~~--~~~~-~e-------------~~~~~---------~~~r~~f~~a~~~l-----------~~~~~~---~~~~~ 182 (406)
+|.. .... .+ ..++. ..-+.+|+.....+ .+++.. ....+
T Consensus 218 ~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql 297 (577)
T KOG1258|consen 218 AERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQL 297 (577)
T ss_pred HhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHH
Confidence 0000 0000 00 00000 01122222221111 122221 23467
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHH
Q 015472 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLR 262 (406)
Q Consensus 183 ~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~ 262 (406)
..|.+|+.++...| +.+++.-.|++|+-.|....++|+.|+.|....|+.+-|..++.++....++. .+.|-..|..
T Consensus 298 ~nw~~yLdf~i~~g-~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~--~~~i~L~~a~ 374 (577)
T KOG1258|consen 298 KNWRYYLDFEITLG-DFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKK--TPIIHLLEAR 374 (577)
T ss_pred HHHHHHhhhhhhcc-cHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCC--CcHHHHHHHH
Confidence 89999999999999 99999999999999999999999999999999999999999999999865443 5678899999
Q ss_pred HHHHhCCHHHHHHHHHhh---chhHHHHHHHHh
Q 015472 263 FEREYGTLEDFDHSVQKV---TPRLEELRLFRS 292 (406)
Q Consensus 263 fE~~~G~~e~~~~a~~k~---~~~~~~~~~~r~ 292 (406)
||+..||..+...+++++ .|.++.+-.+++
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~ 407 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEYPGLVEVVLRKI 407 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhCCchhhhHHHHH
Confidence 999999998876555443 266666654443
No 8
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.85 E-value=1.9e-19 Score=175.29 Aligned_cols=244 Identities=19% Similarity=0.267 Sum_probs=189.4
Q ss_pred hhHHHHHHHHHHHHhcCC--------hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc-------------hhhhHHH
Q 015472 21 EKFQQYMIYLKYEQSSGD--------PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLK-------------VGNVVRD 79 (406)
Q Consensus 21 ~~~~~w~~Yi~~E~~~g~--------~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~-------------~~e~a~~ 79 (406)
..++.|++||.||++++- -.|+..+|+.||...+.++++|..|..|+...+. -.+++..
T Consensus 235 ~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~ 314 (656)
T KOG1914|consen 235 QQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAAS 314 (656)
T ss_pred HHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHH
Confidence 456799999999998752 2589999999999999999999999999986542 1467999
Q ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHccC--CHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhh
Q 015472 80 VYSRATKNCP-WVGELWVRSLLSLERSRA--SEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLD 156 (406)
Q Consensus 80 vyerA~~~~P-~~~~lW~~y~~~lE~~~~--~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~ 156 (406)
+|+|++...- .+..|+..|+.+-|...+ ..+..-.++.+++........ -+|..+..+. ||+ ..
T Consensus 315 ~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t---Lv~~~~mn~i-rR~---------eG 381 (656)
T KOG1914|consen 315 IYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT---LVYCQYMNFI-RRA---------EG 381 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc---eehhHHHHHH-HHh---------hh
Confidence 9999998553 356789999886554332 266778888888875321111 1111222223 333 23
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHH
Q 015472 157 YSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEA 236 (406)
Q Consensus 157 ~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~a 236 (406)
+..+|.+|.+|.+.. ....++++.-|-+|....+|..-|-.||+.+|+.+|+++.+-..|++|+...|+-.++
T Consensus 382 lkaaR~iF~kaR~~~-------r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~ 454 (656)
T KOG1914|consen 382 LKAARKIFKKAREDK-------RTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNA 454 (656)
T ss_pred HHHHHHHHHHHhhcc-------CCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhH
Confidence 457899999998742 2235688888888888777999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhhchhH
Q 015472 237 RSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRL 284 (406)
Q Consensus 237 r~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~a~~k~~~~~ 284 (406)
|.+|+|++.+.++.+.+..||+.||+||-.+||+.++-...++.+.+.
T Consensus 455 R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af 502 (656)
T KOG1914|consen 455 RALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAF 502 (656)
T ss_pred HHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence 999999999766767788999999999999999999877555544333
No 9
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.82 E-value=1.8e-18 Score=171.46 Aligned_cols=250 Identities=18% Similarity=0.239 Sum_probs=199.9
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHH
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyer 83 (406)
.|+..|..|.+.-..-|....+|+.|+..--..|+...++.+..+|+..+|+|.++|+.-+..+..+ ...++++.+|.+
T Consensus 565 t~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en-~e~eraR~llak 643 (913)
T KOG0495|consen 565 TRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFEN-DELERARDLLAK 643 (913)
T ss_pred cHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhcc-ccHHHHHHHHHH
Confidence 3444444444431011234568999999888889999999999999999999999999999887654 468999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHH
Q 015472 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRET 163 (406)
Q Consensus 84 A~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~ 163 (406)
|...-| ...+|..++. +|+..+++++|..++++||+.-|.-...|+.+.+.+ +...+++.+|.+
T Consensus 644 ar~~sg-TeRv~mKs~~-~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~--------------e~~~~ie~aR~a 707 (913)
T KOG0495|consen 644 ARSISG-TERVWMKSAN-LERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIE--------------EQMENIEMAREA 707 (913)
T ss_pred HhccCC-cchhhHHHhH-HHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHH--------------HHHHHHHHHHHH
Confidence 988655 5689999997 888899999999999999997654222233322211 112345577888
Q ss_pred HHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 015472 164 FQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRC 243 (406)
Q Consensus 164 f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ra 243 (406)
|..++.. ||.++.||+..+++|...| .+.+||.|++++...+|++..+|+.-+.||.+.|+.+.|..+..+|
T Consensus 708 Y~~G~k~-------cP~~ipLWllLakleEk~~-~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakA 779 (913)
T KOG0495|consen 708 YLQGTKK-------CPNSIPLWLLLAKLEEKDG-QLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKA 779 (913)
T ss_pred HHhcccc-------CCCCchHHHHHHHHHHHhc-chhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8777665 5777889999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhhc
Q 015472 244 YSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVT 281 (406)
Q Consensus 244 l~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~a~~k~~ 281 (406)
|+ .||. +..+|-.=|-+|-..+--.-..+|++||.
T Consensus 780 LQ-ecp~--sg~LWaEaI~le~~~~rkTks~DALkkce 814 (913)
T KOG0495|consen 780 LQ-ECPS--SGLLWAEAIWLEPRPQRKTKSIDALKKCE 814 (913)
T ss_pred HH-hCCc--cchhHHHHHHhccCcccchHHHHHHHhcc
Confidence 99 5776 46799998988887776555566888883
No 10
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.82 E-value=9.8e-18 Score=166.05 Aligned_cols=278 Identities=20% Similarity=0.283 Sum_probs=199.1
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc-------hhhhHH
Q 015472 6 AHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLK-------VGNVVR 78 (406)
Q Consensus 6 ~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~-------~~e~a~ 78 (406)
.+||.-|.++|. ++..|..||++-.. ........+||||+..+|.|..+|..|+..-..+.+ ..+.+.
T Consensus 14 vpfEeEilRnp~----svk~W~RYIe~k~~-sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn 88 (835)
T KOG2047|consen 14 VPFEEEILRNPF----SVKCWLRYIEHKAG-SPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVN 88 (835)
T ss_pred cchHHHHHcCch----hHHHHHHHHHHHcc-CChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHH
Confidence 479999999984 68999999998754 334578899999999999999999999977654432 246688
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccc-----cHHHHHHHHHH-----HHHHHHHHHhc-
Q 015472 79 DVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS-----TFEEYLDLFLT-----RIDGLRRRILF- 147 (406)
Q Consensus 79 ~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~-----~~~~~~~l~~~-----~~~~l~Rr~~~- 147 (406)
..|+|++...-..+.+|..|+.++ ..++.+..+|..|.+||...|- .|..|+.+... ++-...||.+.
T Consensus 89 ~c~er~lv~mHkmpRIwl~Ylq~l-~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~ 167 (835)
T KOG2047|consen 89 NCFERCLVFMHKMPRIWLDYLQFL-IKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV 167 (835)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHH-HhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 899999986656668999999976 4689999999999999986552 34455554321 22223355543
Q ss_pred -cccchhhhhHHHHHHHHHHHHHHHhhhh-------cCCchHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHhccch
Q 015472 148 -SGEVEGVLDYSLIRETFQRASDYLSEQM-------KNTDGLLRLYAYWAHLEQSMGKDM---VSARGVWERLLKISGAM 216 (406)
Q Consensus 148 -~~~~e~~~~~~~~r~~f~~a~~~l~~~~-------~~~~~~~~l~~~~a~~e~~~~~d~---~~Ar~ife~al~~~~~~ 216 (406)
+...++++++-....-.++|.+.+...+ .-++++..+|..+.++...+. +. -..-.|+..++..+++.
T Consensus 168 ~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p-~~~~slnvdaiiR~gi~rftDq 246 (835)
T KOG2047|consen 168 APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNP-DKVQSLNVDAIIRGGIRRFTDQ 246 (835)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCc-chhcccCHHHHHHhhcccCcHH
Confidence 4444545444332222333322221111 124566789999888877654 21 13456888899999998
Q ss_pred H-HHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHH------------hCCHHHHHHHHHhhchh
Q 015472 217 L-EAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFERE------------YGTLEDFDHSVQKVTPR 283 (406)
Q Consensus 217 ~-~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~------------~G~~e~~~~a~~k~~~~ 283 (406)
. -+|.+.+++.++.|.+++||.+|+.|+.....-.+...|++.|..||+. .|+.++-.+ ++-.+++
T Consensus 247 ~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~d-l~~~~a~ 325 (835)
T KOG2047|consen 247 LGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVD-LELHMAR 325 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhh-HHHHHHH
Confidence 6 5999999999999999999999999999765556778999999999874 244443332 6667778
Q ss_pred HHHHHHHH
Q 015472 284 LEELRLFR 291 (406)
Q Consensus 284 ~~~~~~~r 291 (406)
++.+..+|
T Consensus 326 ~e~lm~rr 333 (835)
T KOG2047|consen 326 FESLMNRR 333 (835)
T ss_pred HHHHHhcc
Confidence 77776555
No 11
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.79 E-value=1.4e-16 Score=155.53 Aligned_cols=252 Identities=20% Similarity=0.304 Sum_probs=183.5
Q ss_pred hhhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchh----hhHH
Q 015472 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVG----NVVR 78 (406)
Q Consensus 3 ~~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~----e~a~ 78 (406)
+.|..||+.+..+|. ....|+.||..|....+++.+..+|.|||.. -.+.+||.-|+.|+.+..+.. +...
T Consensus 37 ~~R~~YEq~~~~FP~----s~r~W~~yi~~El~skdfe~VEkLF~RCLvk-vLnlDLW~lYl~YVR~~~~~~~~~r~~m~ 111 (656)
T KOG1914|consen 37 KVRETYEQLVNVFPS----SPRAWKLYIERELASKDFESVEKLFSRCLVK-VLNLDLWKLYLSYVRETKGKLFGYREKMV 111 (656)
T ss_pred HHHHHHHHHhccCCC----CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HhhHhHHHHHHHHHHHHccCcchHHHHHH
Confidence 479999999999985 3568999999999999999999999999988 478999999999998754322 4566
Q ss_pred HHHHHHHHhC---CCCHHHHHHHHHHHHHc--------cCCHHHHHHHHHHHHhCccccHH----HHHHHHHHHHHHHH-
Q 015472 79 DVYSRATKNC---PWVGELWVRSLLSLERS--------RASEEEISTVFEKSLLCAFSTFE----EYLDLFLTRIDGLR- 142 (406)
Q Consensus 79 ~vyerA~~~~---P~~~~lW~~y~~~lE~~--------~~~~e~ar~if~~al~~~~~~~~----~~~~l~~~~~~~l~- 142 (406)
..|+-|+..| +.+..+|..|+.|++.. +..++.+|.+|++||..|...++ +|..+. .-++.+.
T Consensus 112 qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE-~~IN~~ta 190 (656)
T KOG1914|consen 112 QAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFE-QEINIITA 190 (656)
T ss_pred HHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHH-HHHHHHHH
Confidence 7888888766 67889999999988732 34578899999999998876433 333222 2222222
Q ss_pred HHHhccccchhhhhHHHHHHHHHHHHHHHh------hhhcC--C---chHHHHHHHHHHHHHHcC-----CCH--HHHHH
Q 015472 143 RRILFSGEVEGVLDYSLIRETFQRASDYLS------EQMKN--T---DGLLRLYAYWAHLEQSMG-----KDM--VSARG 204 (406)
Q Consensus 143 Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~------~~~~~--~---~~~~~l~~~~a~~e~~~~-----~d~--~~Ar~ 204 (406)
|++.+ +...++..+|+++++...... +.+.. . -..+.+|.+|+.+|...+ +.+ .+..=
T Consensus 191 rK~i~----e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~y 266 (656)
T KOG1914|consen 191 RKFIG----ERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMY 266 (656)
T ss_pred HHHHH----hhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHH
Confidence 33332 223567778888877654331 11110 1 124679999999998643 123 35557
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHccc--------------HHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHH
Q 015472 205 VWERLLKISGAMLEAWQSYISMEIELDH--------------INEARSIYKRCYSKRFTGTGSEDICHAWLRFERE 266 (406)
Q Consensus 205 ife~al~~~~~~~~lW~~y~~~E~~~g~--------------~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~ 266 (406)
+|++++...+-.+++|..|..|....++ .++++++|+|++.. +... ...++-++.+||+.
T Consensus 267 ayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~-l~~~-~~~Ly~~~a~~eE~ 340 (656)
T KOG1914|consen 267 AYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEG-LLKE-NKLLYFALADYEES 340 (656)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHH-HHHH-HHHHHHHHHhhHHH
Confidence 7999999999999999999999998887 78999999999874 2222 23456666666554
No 12
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.75 E-value=1.6e-16 Score=168.28 Aligned_cols=210 Identities=17% Similarity=0.259 Sum_probs=163.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHccCCHHHHHHHH
Q 015472 42 VQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC-PWV----GELWVRSLLSLERSRASEEEISTVF 116 (406)
Q Consensus 42 ~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~-P~~----~~lW~~y~~~lE~~~~~~e~ar~if 116 (406)
...-|+|.|...|++.-+|+.|+.|..+. ...+.||++++||+..+ +.- -.+|++|+. ||...|+.+...++|
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~Lel-sEiekAR~iaerAL~tIN~REeeEKLNiWiA~lN-lEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLEL-SEIEKARKIAERALKTINFREEEEKLNIWIAYLN-LENAYGTEESLKKVF 1520 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhh-hhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHh-HHHhhCcHHHHHHHH
Confidence 35789999999999999999999998764 46789999999999866 332 269999997 888889999999999
Q ss_pred HHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcC
Q 015472 117 EKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMG 196 (406)
Q Consensus 117 ~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~ 196 (406)
+||.+...+ +.+++..++.+.+ ...+..+-.+|+..++-+ ...+.+|+.|+.++.++.
T Consensus 1521 eRAcqycd~-----~~V~~~L~~iy~k----------~ek~~~A~ell~~m~KKF-------~q~~~vW~~y~~fLl~~n 1578 (1710)
T KOG1070|consen 1521 ERACQYCDA-----YTVHLKLLGIYEK----------SEKNDEADELLRLMLKKF-------GQTRKVWIMYADFLLRQN 1578 (1710)
T ss_pred HHHHHhcch-----HHHHHHHHHHHHH----------hhcchhHHHHHHHHHHHh-------cchhhHHHHHHHHHhccc
Confidence 999985432 2233222221110 011122333333333322 245679999999999999
Q ss_pred CCHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHH
Q 015472 197 KDMVSARGVWERLLKISGA--MLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFD 274 (406)
Q Consensus 197 ~d~~~Ar~ife~al~~~~~--~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~ 274 (406)
+-+.||.++.+||+..|. +.++-..++++|..+|+.+++|.+|+-.|.. .|. ..++|..||+.|..+|+.+.++
T Consensus 1579 -e~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPK--RtDlW~VYid~eik~~~~~~vR 1654 (1710)
T KOG1070|consen 1579 -EAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPK--RTDLWSVYIDMEIKHGDIKYVR 1654 (1710)
T ss_pred -HHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-Ccc--chhHHHHHHHHHHccCCHHHHH
Confidence 889999999999999997 7899999999999999999999999999873 443 5799999999999999999877
Q ss_pred HHHHh
Q 015472 275 HSVQK 279 (406)
Q Consensus 275 ~a~~k 279 (406)
.-.++
T Consensus 1655 ~lfeR 1659 (1710)
T KOG1070|consen 1655 DLFER 1659 (1710)
T ss_pred HHHHH
Confidence 65444
No 13
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.71 E-value=1.5e-16 Score=151.06 Aligned_cols=116 Identities=28% Similarity=0.466 Sum_probs=96.7
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHH
Q 015472 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINE 235 (406)
Q Consensus 156 ~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ 235 (406)
.++.+|.+|.+|++. ......+|..+|.+|..+++|...|+.|||++++.+|.+.++|+.|++|++..|+.++
T Consensus 16 g~~~aR~vF~~a~~~-------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~ 88 (280)
T PF05843_consen 16 GIEAARKVFKRARKD-------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINN 88 (280)
T ss_dssp HHHHHHHHHHHHHCC-------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHH
T ss_pred ChHHHHHHHHHHHcC-------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHH
Confidence 356899999999753 2334679999999999987789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCC-hHHHHHHHHHHHHHhCCHHHHHHHHHh
Q 015472 236 ARSIYKRCYSKRFTGTG-SEDICHAWLRFEREYGTLEDFDHSVQK 279 (406)
Q Consensus 236 ar~l~~ral~~~~~~~~-~~~i~~~~i~fE~~~G~~e~~~~a~~k 279 (406)
||.+|+|++.. ++... ...||..|++||..||+++++....++
T Consensus 89 aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R 132 (280)
T PF05843_consen 89 ARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKR 132 (280)
T ss_dssp HHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred HHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999984 66655 678999999999999999988764443
No 14
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.65 E-value=1.1e-13 Score=134.55 Aligned_cols=135 Identities=22% Similarity=0.407 Sum_probs=109.7
Q ss_pred chhhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcC--------------------ChhHHHHHHHHHHhcCCCCHHHHH
Q 015472 2 CNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSG--------------------DPGRVQLLYERAITDFPVSSDLWL 61 (406)
Q Consensus 2 ~~~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g--------------------~~~~~~~lyEral~~~P~~~~lW~ 61 (406)
...|..||..|.+... ...-|+.||++|.... -+.++..+|.+|+..++.++.+|.
T Consensus 34 vk~Rr~fE~kL~rr~~----~i~Dfi~YI~YE~nl~~lr~kR~Kk~~~k~S~sd~si~~rIv~lyr~at~rf~~D~~lW~ 109 (568)
T KOG2396|consen 34 VKKRRDFELKLQRRTL----SIEDFINYIQYEINLEELRAKRRKKKRVKYSFSDDSIPNRIVFLYRRATNRFNGDVKLWL 109 (568)
T ss_pred HHHHHHHHHHHccCcc----cHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 4689999999999763 4678999999986431 135889999999999999999999
Q ss_pred HHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccc---cHHHHHHHHHHHH
Q 015472 62 DYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS---TFEEYLDLFLTRI 138 (406)
Q Consensus 62 ~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~---~~~~~~~l~~~~~ 138 (406)
+|+.|+.+.. .+.++..||..++..+|.+++||+..+.++-..+.+++.+|.+|.++|.+.|. .|..|+.+.+.+.
T Consensus 110 ~yi~f~kk~~-~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~~~ 188 (568)
T KOG2396|consen 110 SYIAFCKKKK-TYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRMELMYA 188 (568)
T ss_pred HHHHHHHHhc-chhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Confidence 9999998754 46789999999999999999999999875434467799999999999998775 4566777665554
Q ss_pred HHH
Q 015472 139 DGL 141 (406)
Q Consensus 139 ~~l 141 (406)
.-+
T Consensus 189 ~Kl 191 (568)
T KOG2396|consen 189 EKL 191 (568)
T ss_pred HHH
Confidence 433
No 15
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.64 E-value=1.4e-13 Score=137.01 Aligned_cols=257 Identities=18% Similarity=0.212 Sum_probs=189.7
Q ss_pred hhhHHHHHHHhcCC----CCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHH
Q 015472 3 NARAHLEEQISRQD----LSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVR 78 (406)
Q Consensus 3 ~~R~~yE~~L~~~~----~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~ 78 (406)
.+|+.||..|++.. +.++.++..|..|++|+.+.|+.+++..+|+||+..|....++|+.|+.+++.. +..+.+.
T Consensus 273 ~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~-~~~~~~~ 351 (577)
T KOG1258|consen 273 EKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESS-GDVSLAN 351 (577)
T ss_pred HHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHc-CchhHHH
Confidence 57999999999974 346778999999999999999999999999999999999999999999999987 4678899
Q ss_pred HHHHHHHH-hCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhH
Q 015472 79 DVYSRATK-NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDY 157 (406)
Q Consensus 79 ~vyerA~~-~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~ 157 (406)
.++.+|++ ++|..+.+-+.|+. ++..++++..|+.++++..+-.|+ ++.+.+.+++-++|+. . .
T Consensus 352 ~~~~~~~~i~~k~~~~i~L~~a~-f~e~~~n~~~A~~~lq~i~~e~pg----~v~~~l~~~~~e~r~~-~---------~ 416 (577)
T KOG1258|consen 352 NVLARACKIHVKKTPIIHLLEAR-FEESNGNFDDAKVILQRIESEYPG----LVEVVLRKINWERRKG-N---------L 416 (577)
T ss_pred HHHHhhhhhcCCCCcHHHHHHHH-HHHhhccHHHHHHHHHHHHhhCCc----hhhhHHHHHhHHHHhc-c---------h
Confidence 99999998 66888899999997 556799999999999999985554 3333344444444332 1 0
Q ss_pred HHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcc---cHH
Q 015472 158 SLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELD---HIN 234 (406)
Q Consensus 158 ~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g---~~~ 234 (406)
..+.. +........+.-.+..-.-.+...++++-....++.+.|+.++..++...|++--+|+.++.|+..++ +.+
T Consensus 417 ~~~~~-~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~d 495 (577)
T KOG1258|consen 417 EDANY-KNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGREYD 495 (577)
T ss_pred hhhhH-HHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcchhhh
Confidence 01111 11221111111111222345777888888877779999999999999999999999999999999875 444
Q ss_pred HHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHH
Q 015472 235 EARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHS 276 (406)
Q Consensus 235 ~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~a 276 (406)
-.-.++...+....+.+.+..--.+|+.|-..+|+......+
T Consensus 496 ~~e~~~~~~~~~~~~~~~~~~~~~k~~ef~e~~g~~~~~~~~ 537 (577)
T KOG1258|consen 496 LLEPIDWKELKMLIDFDDSRSSTDKYIEFLEWFGIDHKGAQD 537 (577)
T ss_pred hhhhHHHHHHhhhccccccccchHHHHHHHHhccchhHhHhh
Confidence 445555555553333344444456699999999987665433
No 16
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.63 E-value=1.7e-13 Score=131.51 Aligned_cols=269 Identities=16% Similarity=0.200 Sum_probs=193.9
Q ss_pred hhhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcch-----hhhH
Q 015472 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKV-----GNVV 77 (406)
Q Consensus 3 ~~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~-----~e~a 77 (406)
+.|+.||+.+.-+|.. .-+|..|+.-|....++..+..+|-|||.. ..+.++|.-|+.|+.+.... .-.+
T Consensus 60 ~~re~yeq~~~pfp~~----~~aw~ly~s~ELA~~df~svE~lf~rCL~k-~l~ldLW~lYl~YIRr~n~~~tGq~r~~i 134 (660)
T COG5107 60 AEREMYEQLSSPFPIM----EHAWRLYMSGELARKDFRSVESLFGRCLKK-SLNLDLWMLYLEYIRRVNNLITGQKRFKI 134 (660)
T ss_pred HHHHHHHHhcCCCccc----cHHHHHHhcchhhhhhHHHHHHHHHHHHhh-hccHhHHHHHHHHHHhhCcccccchhhhh
Confidence 4689999998888753 448999999999999999999999999988 47899999999999875421 1234
Q ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHc--------cCCHHHHHHHHHHHHhCccccHH---HHHHHHHHHHHHHH-
Q 015472 78 RDVYSRATK---NCPWVGELWVRSLLSLERS--------RASEEEISTVFEKSLLCAFSTFE---EYLDLFLTRIDGLR- 142 (406)
Q Consensus 78 ~~vyerA~~---~~P~~~~lW~~y~~~lE~~--------~~~~e~ar~if~~al~~~~~~~~---~~~~l~~~~~~~l~- 142 (406)
.++|+-.+. ..|.++.+|..|+.++|.. +..++.+|..|.+||..|...++ .-+.-|..-++.+.
T Consensus 135 ~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~Ta 214 (660)
T COG5107 135 YEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITA 214 (660)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHH
Confidence 556666555 2288999999999988743 34578899999999999886433 22333333333333
Q ss_pred HHHhccccchhhhhHHHHHHHHHHHHHHHh------h-----hhcCCchHHHHHHHHHHHHHHcC----CCH--HHHHHH
Q 015472 143 RRILFSGEVEGVLDYSLIRETFQRASDYLS------E-----QMKNTDGLLRLYAYWAHLEQSMG----KDM--VSARGV 205 (406)
Q Consensus 143 Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~------~-----~~~~~~~~~~l~~~~a~~e~~~~----~d~--~~Ar~i 205 (406)
|+..+.. .-.+..+|+.|++...... + +-+.......-|.+|+++|...+ +++ .+.--+
T Consensus 215 rKfvge~----sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~ 290 (660)
T COG5107 215 RKFVGET----SPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYI 290 (660)
T ss_pred HHHhccc----CHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHH
Confidence 3333322 1235567777777654321 0 00111123346999999998633 343 344578
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhhchhHH
Q 015472 206 WERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLE 285 (406)
Q Consensus 206 fe~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~a~~k~~~~~~ 285 (406)
|++++...+-.+++|..|..+....++-++|.....|++.. +| .+-..+..++.-..+.+++..|.++|+..+.
T Consensus 291 ~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~-sp-----sL~~~lse~yel~nd~e~v~~~fdk~~q~L~ 364 (660)
T COG5107 291 HNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM-SP-----SLTMFLSEYYELVNDEEAVYGCFDKCTQDLK 364 (660)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC-CC-----chheeHHHHHhhcccHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999862 33 3666677777778888899889999976654
Q ss_pred H
Q 015472 286 E 286 (406)
Q Consensus 286 ~ 286 (406)
.
T Consensus 365 r 365 (660)
T COG5107 365 R 365 (660)
T ss_pred H
Confidence 3
No 17
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.61 E-value=3.5e-14 Score=136.11 Aligned_cols=229 Identities=18% Similarity=0.250 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHhcC-----C--hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHH
Q 015472 23 FQQYMIYLKYEQSSG-----D--PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELW 95 (406)
Q Consensus 23 ~~~w~~Yi~~E~~~g-----~--~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW 95 (406)
...|++||.||...| + ..++.-+|+.++.-+|.++++|.+|-.|+...+ +.+.|..+.+|++..||. |-
T Consensus 261 ~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~is-d~q~al~tv~rg~~~sps---L~ 336 (660)
T COG5107 261 DSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGIS-DKQKALKTVERGIEMSPS---LT 336 (660)
T ss_pred cchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcc-HHHHHHHHHHhcccCCCc---hh
Confidence 346999999999875 2 368999999999999999999999999998643 678899999999888885 66
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCcc---------------ccH----HHHH-------HHHHHHHHHHHHHHhccc
Q 015472 96 VRSLLSLERSRASEEEISTVFEKSLLCAF---------------STF----EEYL-------DLFLTRIDGLRRRILFSG 149 (406)
Q Consensus 96 ~~y~~~lE~~~~~~e~ar~if~~al~~~~---------------~~~----~~~~-------~l~~~~~~~l~Rr~~~~~ 149 (406)
..|..+.| ...+.+.++..|++|++... +.. +..+ -+|.-.+++++|.
T Consensus 337 ~~lse~ye-l~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~----- 410 (660)
T COG5107 337 MFLSEYYE-LVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRK----- 410 (660)
T ss_pred eeHHHHHh-hcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHH-----
Confidence 66776555 46788899999999885211 001 1110 1122222233222
Q ss_pred cchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 015472 150 EVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIE 229 (406)
Q Consensus 150 ~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~ 229 (406)
..++.+|.+|.+|.+.- .. ..++++.-|-+|....+|+.-|-.||+.++..+|+++-+-..|..|.+.
T Consensus 411 -----~Gl~aaR~~F~k~rk~~--~~-----~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~ 478 (660)
T COG5107 411 -----RGLEAARKLFIKLRKEG--IV-----GHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIR 478 (660)
T ss_pred -----hhHHHHHHHHHHHhccC--CC-----CcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 23457899999987641 11 1236666666776655599999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHH
Q 015472 230 LDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFD 274 (406)
Q Consensus 230 ~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~ 274 (406)
.|+-..||.+|+.++.+ +..+.-..||+.||++|-.+|++..+-
T Consensus 479 inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~ 522 (660)
T COG5107 479 INDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVY 522 (660)
T ss_pred hCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHH
Confidence 99999999999999984 555556789999999999999997653
No 18
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.51 E-value=2.8e-12 Score=124.85 Aligned_cols=90 Identities=14% Similarity=0.302 Sum_probs=81.9
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHH
Q 015472 7 HLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATK 86 (406)
Q Consensus 7 ~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~ 86 (406)
.|-.++.+++ . +..+|..|+.|.++.+.+.++..+|..+|..+|+++++|+.-+.++...+-+.+.++++|.|+++
T Consensus 93 lyr~at~rf~-~---D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 93 LYRRATNRFN-G---DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHhcC-C---CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 5777888886 2 57899999999999999999999999999999999999999999887655568999999999999
Q ss_pred hCCCCHHHHHHHHH
Q 015472 87 NCPWVGELWVRSLL 100 (406)
Q Consensus 87 ~~P~~~~lW~~y~~ 100 (406)
.||.++.||..|..
T Consensus 169 ~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 169 FNPDSPKLWKEYFR 182 (568)
T ss_pred cCCCChHHHHHHHH
Confidence 99999999999996
No 19
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.50 E-value=4.5e-13 Score=127.25 Aligned_cols=134 Identities=19% Similarity=0.349 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cCCHHHHHHHHHHHHhCccccHHHHHHHHHH
Q 015472 58 DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERS-RASEEEISTVFEKSLLCAFSTFEEYLDLFLT 136 (406)
Q Consensus 58 ~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~-~~~~e~ar~if~~al~~~~~~~~~~~~l~~~ 136 (406)
-+|+.|+.|+.+.. ..+.+|.||.+|....+.+..+|..++. +|.. +++.+.|+.||+++++.-
T Consensus 2 ~v~i~~m~~~~r~~-g~~~aR~vF~~a~~~~~~~~~vy~~~A~-~E~~~~~d~~~A~~Ife~glk~f------------- 66 (280)
T PF05843_consen 2 LVWIQYMRFMRRTE-GIEAARKVFKRARKDKRCTYHVYVAYAL-MEYYCNKDPKRARKIFERGLKKF------------- 66 (280)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCS-THHHHHHHH-HHHHTCS-HHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHhC-ChHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHC-------------
Confidence 36888888888765 4678888999987544455688888886 6665 566667889999877521
Q ss_pred HHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccch
Q 015472 137 RIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM 216 (406)
Q Consensus 137 ~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~ 216 (406)
+....+|..|++++..++ +.+.||.+|++++...+..
T Consensus 67 ------------------------------------------~~~~~~~~~Y~~~l~~~~-d~~~aR~lfer~i~~l~~~ 103 (280)
T PF05843_consen 67 ------------------------------------------PSDPDFWLEYLDFLIKLN-DINNARALFERAISSLPKE 103 (280)
T ss_dssp ------------------------------------------TT-HHHHHHHHHHHHHTT--HHHHHHHHHHHCCTSSCH
T ss_pred ------------------------------------------CCCHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHhcCch
Confidence 122357888888888888 8889999999999886654
Q ss_pred H---HHHHHHHHHHHHcccHHHHHHHHHHHHhcccCC
Q 015472 217 L---EAWQSYISMEIELDHINEARSIYKRCYSKRFTG 250 (406)
Q Consensus 217 ~---~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~ 250 (406)
. .+|..|++||..+|+.+.+++|++|+.. .++.
T Consensus 104 ~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~-~~~~ 139 (280)
T PF05843_consen 104 KQSKKIWKKFIEFESKYGDLESVRKVEKRAEE-LFPE 139 (280)
T ss_dssp HHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH-HTTT
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-Hhhh
Confidence 4 6999999999999999999999999987 4665
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.46 E-value=3.1e-11 Score=127.35 Aligned_cols=239 Identities=13% Similarity=0.066 Sum_probs=160.6
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHH
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyer 83 (406)
+-..|+.+|.... .++.....|...+.+....|+++.+...|++++..+|.+...|+.++..+... +..+.+...|++
T Consensus 313 A~~~~~~al~~~~-~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~-g~~~eA~~~~~~ 390 (615)
T TIGR00990 313 AARAFEKALDLGK-LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLEL-GDPDKAEEDFDK 390 (615)
T ss_pred HHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHH
Confidence 4567888887653 22344556777777777788999999999999998898888888888766643 467888899999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHH-----H---HHHHHHh--ccccch-
Q 015472 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRI-----D---GLRRRIL--FSGEVE- 152 (406)
Q Consensus 84 A~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~-----~---~l~Rr~~--~~~~~e- 152 (406)
|+...|....+|...+.. ....+++++|...|++++...|.....++.+..... + ...++++ .+...+
T Consensus 391 al~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~ 469 (615)
T TIGR00990 391 ALKLNSEDPDIYYHRAQL-HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDV 469 (615)
T ss_pred HHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHH
Confidence 998888888888888873 345788899999999998877764443333221110 0 0001111 122111
Q ss_pred ---------hhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHH
Q 015472 153 ---------GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSY 223 (406)
Q Consensus 153 ---------~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y 223 (406)
..+++..+...|++++...+...........++...+.+....+ +++.|..+|++++..+|++...|...
T Consensus 470 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~-~~~eA~~~~~kAl~l~p~~~~a~~~l 548 (615)
T TIGR00990 470 YNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ-DFIEAENLCEKALIIDPECDIAVATM 548 (615)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 12334455566666655421110000111112222222223356 89999999999999999999899999
Q ss_pred HHHHHHcccHHHHHHHHHHHHhc
Q 015472 224 ISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 224 ~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
+......|+++.|..+|++++..
T Consensus 549 a~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 549 AQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999999874
No 21
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.45 E-value=6.8e-12 Score=124.68 Aligned_cols=237 Identities=16% Similarity=0.129 Sum_probs=146.7
Q ss_pred chhhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHH
Q 015472 2 CNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVY 81 (406)
Q Consensus 2 ~~~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vy 81 (406)
|.+-..||++++-.|. -+++|.+.+...+..+.+++|...|+||+..-|++....-+.+...-.+ +..+.|...|
T Consensus 235 ~~aiq~y~eAvkldP~----f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeq-G~ldlAI~~Y 309 (966)
T KOG4626|consen 235 WLAIQHYEEAVKLDPN----FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQ-GLLDLAIDTY 309 (966)
T ss_pred HHHHHHHHHhhcCCCc----chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEecc-ccHHHHHHHH
Confidence 4455667777776652 4566777777777777777777777777777777766655544322222 3567788888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHH--------HHHHHh--ccccc
Q 015472 82 SRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDG--------LRRRIL--FSGEV 151 (406)
Q Consensus 82 erA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~--------l~Rr~~--~~~~~ 151 (406)
+||+...|.....+.+.+..|. ..|++.++...|.+||...+...+.+.++...+.+. +.+.++ .+.-.
T Consensus 310 kral~~~P~F~~Ay~NlanALk-d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~a 388 (966)
T KOG4626|consen 310 KRALELQPNFPDAYNNLANALK-DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFA 388 (966)
T ss_pred HHHHhcCCCchHHHhHHHHHHH-hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhh
Confidence 8888888888888888887664 468888888899998887776555544444332211 111111 11100
Q ss_pred hhhhhHH---HHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 015472 152 EGVLDYS---LIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEI 228 (406)
Q Consensus 152 e~~~~~~---~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~ 228 (406)
....++. .-+..+.+|+......+...|...+.+.+.+..+...| +++.|...|.+|+..+|..++.+...+....
T Consensus 389 aa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g-~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k 467 (966)
T KOG4626|consen 389 AAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMG-DVSAAIQCYTRAIQINPTFAEAHSNLASIYK 467 (966)
T ss_pred hhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhh-hHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence 0000000 01122233333322222223444556666666677777 7778888888888888877777777777777
Q ss_pred HcccHHHHHHHHHHHHh
Q 015472 229 ELDHINEARSIYKRCYS 245 (406)
Q Consensus 229 ~~g~~~~ar~l~~ral~ 245 (406)
..|++..|..-|+.||.
T Consensus 468 DsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 468 DSGNIPEAIQSYRTALK 484 (966)
T ss_pred ccCCcHHHHHHHHHHHc
Confidence 77888888888888875
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.45 E-value=2.2e-10 Score=120.95 Aligned_cols=187 Identities=10% Similarity=0.044 Sum_probs=124.8
Q ss_pred hcCChhHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHH
Q 015472 35 SSGDPGRVQLLYERAITD---FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEE 111 (406)
Q Consensus 35 ~~g~~~~~~~lyEral~~---~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ 111 (406)
..+.++.+...|++++.. .|.....|...+.+.... +..+.|...|++|+...|.....|..++..+ ...+++++
T Consensus 306 ~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~-g~~~eA~~~~~kal~l~P~~~~~~~~la~~~-~~~g~~~e 383 (615)
T TIGR00990 306 ADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLK-GKHLEALADLSKSIELDPRVTQSYIKRASMN-LELGDPDK 383 (615)
T ss_pred hhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH-HHCCCHHH
Confidence 357889999999999986 467777888888777654 4788999999999999999999999888744 45789999
Q ss_pred HHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHH
Q 015472 112 ISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHL 191 (406)
Q Consensus 112 ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~ 191 (406)
|...|++++...|.....+..+...+. . .+++..+...|++++.. .|.....|...+.+
T Consensus 384 A~~~~~~al~~~p~~~~~~~~lg~~~~-----~---------~g~~~~A~~~~~kal~l-------~P~~~~~~~~la~~ 442 (615)
T TIGR00990 384 AEEDFDKALKLNSEDPDIYYHRAQLHF-----I---------KGEFAQAGKDYQKSIDL-------DPDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHH-----H---------cCCHHHHHHHHHHHHHc-------CccCHHHHHHHHHH
Confidence 999999999987765444443332111 0 13344555555555443 12233445555555
Q ss_pred HHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 015472 192 EQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (406)
Q Consensus 192 e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~ 245 (406)
...+| +++.|...|++++..+|+++.+|..++......|+++.|...|++|+.
T Consensus 443 ~~~~g-~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 443 QYKEG-SIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred HHHCC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 55555 555556666655555555555555555555555555555555555554
No 23
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.40 E-value=1.4e-10 Score=115.45 Aligned_cols=224 Identities=16% Similarity=0.150 Sum_probs=139.3
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc----------------
Q 015472 9 EEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLK---------------- 72 (406)
Q Consensus 9 E~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~---------------- 72 (406)
+.+|+..| ...+.+.+|++..+..|.++++..+|+.+|...|...+.|+..+.-+...++
T Consensus 106 ~~a~r~~~----q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP 181 (966)
T KOG4626|consen 106 LLAIRKNP----QGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNP 181 (966)
T ss_pred hhhhhccc----hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCc
Confidence 34555554 3456777778877778888888888888888888888888887776665432
Q ss_pred -----------------hhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHH
Q 015472 73 -----------------VGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFL 135 (406)
Q Consensus 73 -----------------~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~ 135 (406)
...++...|.+|+..+|...-.|..++..+ ...|++-.+.+.|++|++..|.-.+.|+++..
T Consensus 182 ~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f-~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGn 260 (966)
T KOG4626|consen 182 DLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVF-NAQGEIWLAIQHYEEAVKLDPNFLDAYINLGN 260 (966)
T ss_pred chhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHH-hhcchHHHHHHHHHHhhcCCCcchHHHhhHHH
Confidence 123455666666666666666777777644 34778888888888888888877777777764
Q ss_pred HHHH----------HHHHHHhccccch----------hhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHc
Q 015472 136 TRID----------GLRRRILFSGEVE----------GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSM 195 (406)
Q Consensus 136 ~~~~----------~l~Rr~~~~~~~e----------~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~ 195 (406)
.+-+ |++.-.+.+.... +-++++.+-..|.+|++.- |.....+.+.|..+...
T Consensus 261 V~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-------P~F~~Ay~NlanALkd~ 333 (966)
T KOG4626|consen 261 VYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-------PNFPDAYNNLANALKDK 333 (966)
T ss_pred HHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-------CCchHHHhHHHHHHHhc
Confidence 3211 2211111121111 1244456667777776642 22233455555555566
Q ss_pred CCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 015472 196 GKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (406)
Q Consensus 196 ~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~ 245 (406)
| ++.+|..+|.+||..+|++++.-...+...+++|.++.|..+|..|+.
T Consensus 334 G-~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~ 382 (966)
T KOG4626|consen 334 G-SVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE 382 (966)
T ss_pred c-chHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 6 666666666666666666666666666666666666666666666665
No 24
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.38 E-value=4.8e-10 Score=121.57 Aligned_cols=259 Identities=14% Similarity=0.044 Sum_probs=124.7
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHH
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyer 83 (406)
+...|+.++...|. ....+...+......|+++.+..++++.+...|.++.+|..++..+... +..+.|..+|++
T Consensus 416 A~~~~~~a~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~ 490 (899)
T TIGR02917 416 AIADLETAAQLDPE----LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGK-GDLAKAREAFEK 490 (899)
T ss_pred HHHHHHHHHhhCCc----chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhC-CCHHHHHHHHHH
Confidence 44556666555431 1222333333344455555555566655555555555555555544432 244555556666
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHH-----HH---HHHHHh--ccccchh
Q 015472 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRI-----DG---LRRRIL--FSGEVEG 153 (406)
Q Consensus 84 A~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~-----~~---l~Rr~~--~~~~~e~ 153 (406)
++...|.....|..++..+ ...++.+++..+|++++...|.....+..+...+. +. ...++. .+.....
T Consensus 491 a~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 569 (899)
T TIGR02917 491 ALSIEPDFFPAAANLARID-IQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEP 569 (899)
T ss_pred HHhhCCCcHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhH
Confidence 5555555555555555422 23455555555555555544332222111110000 00 000000 0000000
Q ss_pred hh---hHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHc
Q 015472 154 VL---DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIEL 230 (406)
Q Consensus 154 ~~---~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~ 230 (406)
.. ..-.....+++|+..+.......+....+|..++......| +++.|..+|++++...|+++..|..++.+....
T Consensus 570 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 648 (899)
T TIGR02917 570 ALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAG-DLNKAVSSFKKLLALQPDSALALLLLADAYAVM 648 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 00 00000111222333322222223334456666666666666 677777777777777777777777777777777
Q ss_pred ccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHH
Q 015472 231 DHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLED 272 (406)
Q Consensus 231 g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~ 272 (406)
|+++.|..+|++++.. .|. ....|..........|..+.
T Consensus 649 ~~~~~A~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~ 687 (899)
T TIGR02917 649 KNYAKAITSLKRALEL-KPD--NTEAQIGLAQLLLAAKRTES 687 (899)
T ss_pred CCHHHHHHHHHHHHhc-CCC--CHHHHHHHHHHHHHcCCHHH
Confidence 7777777777777753 222 23455555555555565544
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.36 E-value=1.5e-09 Score=115.02 Aligned_cols=67 Identities=10% Similarity=0.069 Sum_probs=41.8
Q ss_pred CchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 015472 178 TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (406)
Q Consensus 178 ~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~ 245 (406)
.|....++..++.+....| +++.|...|++++...|+++.++..++......|+++.|...|++++.
T Consensus 280 ~P~~~~a~~~lg~~l~~~g-~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTG-QNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred CCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444556666666666666 666666666666666666666666666666666666666666666665
No 26
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.33 E-value=2.2e-09 Score=116.48 Aligned_cols=229 Identities=13% Similarity=-0.007 Sum_probs=149.2
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHH
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyer 83 (406)
+...++..+...|. +...|...+......|+++.+...|++++...|.+...|..++......+ ..+.+..+|++
T Consensus 450 A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~ 524 (899)
T TIGR02917 450 ALAAAKKLEKKQPD----NASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEG-NPDDAIQRFEK 524 (899)
T ss_pred HHHHHHHHHHhCCC----CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCC-CHHHHHHHHHH
Confidence 45667777766652 35567777777777888888888888888888888888888887766543 56778888888
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHH--------HHHHHHhc--cccch-
Q 015472 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRID--------GLRRRILF--SGEVE- 152 (406)
Q Consensus 84 A~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~--------~l~Rr~~~--~~~~e- 152 (406)
++...|.....|..++..+. ..++.+++..+|.+++...+.....++.+...+.. .+.+++.. +...+
T Consensus 525 ~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 603 (899)
T TIGR02917 525 VLTIDPKNLRAILALAGLYL-RTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEA 603 (899)
T ss_pred HHHhCcCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 88888888888888776443 47788888888888887665433332222111100 00011110 11101
Q ss_pred ---------hhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHH
Q 015472 153 ---------GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSY 223 (406)
Q Consensus 153 ---------~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y 223 (406)
..++++.+...|+++++ ..+.....|..++.+....| +++.|..+|++++...|++...|..+
T Consensus 604 ~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l 675 (899)
T TIGR02917 604 WLMLGRAQLAAGDLNKAVSSFKKLLA-------LQPDSALALLLLADAYAVMK-NYAKAITSLKRALELKPDNTEAQIGL 675 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 01222233333433333 23334456667777777777 78888888888888888877778777
Q ss_pred HHHHHHcccHHHHHHHHHHHHhc
Q 015472 224 ISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 224 ~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
+.+....|+++.|..+++.+...
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~ 698 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQ 698 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777777777777777777653
No 27
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.33 E-value=1e-09 Score=97.84 Aligned_cols=206 Identities=16% Similarity=0.124 Sum_probs=159.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015472 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER 104 (406)
Q Consensus 25 ~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~ 104 (406)
+.+..+---...|++..|..-+|.||..+|.+...|.-.+.+....+ ..+.+.+-|++|++..|..+++-.+|.-||-.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~G-e~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLG-ENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC-ChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 34433333456899999999999999999999999999998888755 67899999999999999999999999988764
Q ss_pred ccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHH
Q 015472 105 SRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRL 184 (406)
Q Consensus 105 ~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l 184 (406)
++.++++-.-|++|+..|.- . .....
T Consensus 116 -qg~~~eA~q~F~~Al~~P~Y-----~------------------------------------------------~~s~t 141 (250)
T COG3063 116 -QGRPEEAMQQFERALADPAY-----G------------------------------------------------EPSDT 141 (250)
T ss_pred -CCChHHHHHHHHHHHhCCCC-----C------------------------------------------------Ccchh
Confidence 67999999999999985431 0 00001
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHH
Q 015472 185 YAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFE 264 (406)
Q Consensus 185 ~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE 264 (406)
|.+.+-.-.+.| ..+.|+..|+++|..+|+.+..-+..+..++.-|++-.||..+++-... .+ ...+.+|.. |.|+
T Consensus 142 ~eN~G~Cal~~g-q~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~-~~-~~A~sL~L~-iria 217 (250)
T COG3063 142 LENLGLCALKAG-QFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQR-GG-AQAESLLLG-IRIA 217 (250)
T ss_pred hhhhHHHHhhcC-CchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhc-cc-ccHHHHHHH-HHHH
Confidence 111111124567 8999999999999999999999999999999999999999999998874 33 446778877 7899
Q ss_pred HHhCCHHHHHH---HHHhhchhHHHHHH
Q 015472 265 REYGTLEDFDH---SVQKVTPRLEELRL 289 (406)
Q Consensus 265 ~~~G~~e~~~~---a~~k~~~~~~~~~~ 289 (406)
+..||.+.... =+++..|.-.+.+.
T Consensus 218 k~~gd~~~a~~Y~~qL~r~fP~s~e~q~ 245 (250)
T COG3063 218 KRLGDRAAAQRYQAQLQRLFPYSEEYQT 245 (250)
T ss_pred HHhccHHHHHHHHHHHHHhCCCcHHHHh
Confidence 99999766433 24555555555443
No 28
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.30 E-value=4.9e-09 Score=111.16 Aligned_cols=238 Identities=13% Similarity=0.020 Sum_probs=159.0
Q ss_pred hhhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHH
Q 015472 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (406)
Q Consensus 3 ~~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vye 82 (406)
.+...|+..+...|. +...|...+......|+++.|...|++++..+|.++.+|...+..+... +..+.|..+|+
T Consensus 94 ~A~~~l~~~l~~~P~----~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~-g~~~eA~~~~~ 168 (656)
T PRK15174 94 AVLQVVNKLLAVNVC----QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLM-DKELQAISLAR 168 (656)
T ss_pred HHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-CChHHHHHHHH
Confidence 356789999988873 5678888888888899999999999999999999999999999887764 46788999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCcc-ccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHH
Q 015472 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAF-STFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIR 161 (406)
Q Consensus 83 rA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~-~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r 161 (406)
+++...|.+..+|...+. + ...+++++|..++.+++...+ ........+... +. . .+++..+.
T Consensus 169 ~~~~~~P~~~~a~~~~~~-l-~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~----l~-~---------~g~~~eA~ 232 (656)
T PRK15174 169 TQAQEVPPRGDMIATCLS-F-LNKSRLPEDHDLARALLPFFALERQESAGLAVDT----LC-A---------VGKYQEAI 232 (656)
T ss_pred HHHHhCCCCHHHHHHHHH-H-HHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHH----HH-H---------CCCHHHHH
Confidence 999999988887766543 3 347889999999999888643 211111111100 00 0 13344556
Q ss_pred HHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHH----HHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHH
Q 015472 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVS----ARGVWERLLKISGAMLEAWQSYISMEIELDHINEAR 237 (406)
Q Consensus 162 ~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~----Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar 237 (406)
..|.+++.. .|....++..++.+....| +++. |...|++++...|+++.+|..++......|+++.|.
T Consensus 233 ~~~~~al~~-------~p~~~~~~~~Lg~~l~~~G-~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~ 304 (656)
T PRK15174 233 QTGESALAR-------GLDGAALRRSLGLAYYQSG-RSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAI 304 (656)
T ss_pred HHHHHHHhc-------CCCCHHHHHHHHHHHHHcC-CchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 666666653 1233455666666666666 5553 677777777777777777777777777777777777
Q ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHH
Q 015472 238 SIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLED 272 (406)
Q Consensus 238 ~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~ 272 (406)
.+|++++.. .|. ...++..+...-...|..+.
T Consensus 305 ~~l~~al~l-~P~--~~~a~~~La~~l~~~G~~~e 336 (656)
T PRK15174 305 PLLQQSLAT-HPD--LPYVRAMYARALRQVGQYTA 336 (656)
T ss_pred HHHHHHHHh-CCC--CHHHHHHHHHHHHHCCCHHH
Confidence 777777653 222 23334333333334455443
No 29
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.27 E-value=6.2e-09 Score=99.84 Aligned_cols=211 Identities=16% Similarity=0.181 Sum_probs=150.3
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHH
Q 015472 7 HLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATK 86 (406)
Q Consensus 7 ~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~ 86 (406)
.+...|...+..++.....|...+......|+.+.+...|++++..+|.++..|...+..+... +..+.|...|++|+.
T Consensus 48 ~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~-g~~~~A~~~~~~Al~ 126 (296)
T PRK11189 48 RLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQA-GNFDAAYEAFDSVLE 126 (296)
T ss_pred HHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
Confidence 3455565555333344678888888888899999999999999999999999999999887765 478999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHH
Q 015472 87 NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQR 166 (406)
Q Consensus 87 ~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~ 166 (406)
..|.....|...+..+ ...+++++|...|++++...|... +..+|..... ...+...+...|.+
T Consensus 127 l~P~~~~a~~~lg~~l-~~~g~~~eA~~~~~~al~~~P~~~--~~~~~~~l~~-------------~~~~~~~A~~~l~~ 190 (296)
T PRK11189 127 LDPTYNYAYLNRGIAL-YYGGRYELAQDDLLAFYQDDPNDP--YRALWLYLAE-------------SKLDPKQAKENLKQ 190 (296)
T ss_pred hCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHH-------------ccCCHHHHHHHHHH
Confidence 9999999999988744 458999999999999999877543 2223321110 01233455556655
Q ss_pred HHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH-------HhccchHHHHHHHHHHHHHcccHHHHHHH
Q 015472 167 ASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLL-------KISGAMLEAWQSYISMEIELDHINEARSI 239 (406)
Q Consensus 167 a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al-------~~~~~~~~lW~~y~~~E~~~g~~~~ar~l 239 (406)
+.... .++ .|. ++.....+| ++..+ ..++.+. ...|...+.|...+......|+++.|+..
T Consensus 191 ~~~~~------~~~---~~~-~~~~~~~lg-~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~ 258 (296)
T PRK11189 191 RYEKL------DKE---QWG-WNIVEFYLG-KISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAAL 258 (296)
T ss_pred HHhhC------Ccc---ccH-HHHHHHHcc-CCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44321 111 232 334444566 44333 2444444 44556678999999999999999999999
Q ss_pred HHHHHhc
Q 015472 240 YKRCYSK 246 (406)
Q Consensus 240 ~~ral~~ 246 (406)
|++|+..
T Consensus 259 ~~~Al~~ 265 (296)
T PRK11189 259 FKLALAN 265 (296)
T ss_pred HHHHHHh
Confidence 9999974
No 30
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.26 E-value=7.9e-09 Score=116.51 Aligned_cols=263 Identities=12% Similarity=0.058 Sum_probs=177.6
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--------------
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDK-------------- 69 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~-------------- 69 (406)
+...|+.+|...| .+...+...+......|+++.|...|++++..+|.+...|...+..+..
T Consensus 370 A~~~~~~Al~~~P----~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~ 445 (1157)
T PRK11447 370 AERLYQQARQVDN----TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLS 445 (1157)
T ss_pred HHHHHHHHHHhCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCC
Confidence 5677888888876 2456788888888899999999999999999999999888765543210
Q ss_pred ---------------------------hcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 015472 70 ---------------------------TLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLC 122 (406)
Q Consensus 70 ---------------------------~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~ 122 (406)
..+..+.|..+|++|+...|.+..++..++..+ ...+++++|..+|++++..
T Consensus 446 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~-~~~G~~~~A~~~l~~al~~ 524 (1157)
T PRK11447 446 ASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDL-RQAGQRSQADALMRRLAQQ 524 (1157)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHc
Confidence 123567899999999999999988888888755 4589999999999999987
Q ss_pred ccccHHHHHHH--HHHH-------HHHHHHHHhccccchhhhhH----------H-----HHHHHHHHHHHHHhhhhcCC
Q 015472 123 AFSTFEEYLDL--FLTR-------IDGLRRRILFSGEVEGVLDY----------S-----LIRETFQRASDYLSEQMKNT 178 (406)
Q Consensus 123 ~~~~~~~~~~l--~~~~-------~~~l~Rr~~~~~~~e~~~~~----------~-----~~r~~f~~a~~~l~~~~~~~ 178 (406)
.|.....++.+ +... ...+. ++..........++ . ....-+++|+..+.. .
T Consensus 525 ~P~~~~~~~a~al~l~~~~~~~~Al~~l~-~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~----~ 599 (1157)
T PRK11447 525 KPNDPEQVYAYGLYLSGSDRDRAALAHLN-TLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ----Q 599 (1157)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHH-hCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh----C
Confidence 66544333221 1110 00010 00000000000000 0 011124445555432 3
Q ss_pred chHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHH
Q 015472 179 DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICH 258 (406)
Q Consensus 179 ~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~ 258 (406)
|.+..++..++.+....| +++.|+.+|++++...|+++..|+..+.+....|+++.|+.+|++++.. .|. ...++.
T Consensus 600 p~~~~~~~~La~~~~~~g-~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-~p~--~~~~~~ 675 (1157)
T PRK11447 600 PPSTRIDLTLADWAQQRG-DYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT-AND--SLNTQR 675 (1157)
T ss_pred CCCchHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-CCC--ChHHHH
Confidence 444557778888888889 8999999999999999999999999999999999999999999998863 332 234444
Q ss_pred HHHHHHHHhCCHHHHHHHHHhh
Q 015472 259 AWLRFEREYGTLEDFDHSVQKV 280 (406)
Q Consensus 259 ~~i~fE~~~G~~e~~~~a~~k~ 280 (406)
.....-..-|+.+.....+++.
T Consensus 676 ~la~~~~~~g~~~eA~~~~~~a 697 (1157)
T PRK11447 676 RVALAWAALGDTAAAQRTFNRL 697 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHH
Confidence 4344444577776654444443
No 31
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.26 E-value=6.6e-09 Score=93.95 Aligned_cols=199 Identities=15% Similarity=0.043 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015472 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSL 102 (406)
Q Consensus 23 ~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~l 102 (406)
...+...+......|+++.+...|++++...|.+...|...+...... ++.+.+...|++++...|.....|..++..+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQL-GELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 456777777777889999999999999999999999999888777654 4678899999999999999888998888744
Q ss_pred HHccCCHHHHHHHHHHHHhCccc--cHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCch
Q 015472 103 ERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDG 180 (406)
Q Consensus 103 E~~~~~~e~ar~if~~al~~~~~--~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~ 180 (406)
...+++++|...|.+++..... ....+..+.... . ..+++..+...|.+++... +.
T Consensus 110 -~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~---------~~g~~~~A~~~~~~~~~~~-------~~ 167 (234)
T TIGR02521 110 -CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA-----L---------KAGDFDKAEKYLTRALQID-------PQ 167 (234)
T ss_pred -HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH-----H---------HcCCHHHHHHHHHHHHHhC-------cC
Confidence 4578999999999999874321 111111111000 0 0133344555555554431 22
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 015472 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (406)
Q Consensus 181 ~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~ 245 (406)
....+..++.+....| +++.|..+|++++...|.++..|...+.+....|+.+.|+.+.+.+..
T Consensus 168 ~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 168 RPESLLELAELYYLRG-QYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred ChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3345556666666666 677777777777766666666555666666666777777766665543
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.26 E-value=6.4e-11 Score=112.54 Aligned_cols=225 Identities=14% Similarity=0.072 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015472 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (406)
Q Consensus 22 ~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~ 101 (406)
+...|..+.......|+.+.+...|++.+...+.++.....++.++. .+.++.+..+++++....+ +..+|..++..
T Consensus 43 ~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~--~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~ 119 (280)
T PF13429_consen 43 DPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQ--DGDPEEALKLAEKAYERDG-DPRYLLSALQL 119 (280)
T ss_dssp ------------------------------------------------------------------------------H-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccc-ccchhhHHHHH
Confidence 45567777777666777777777777777776666666666666632 2345666666666665443 34555555553
Q ss_pred HHHccCCHHHHHHHHHHHHhCc--cccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCc
Q 015472 102 LERSRASEEEISTVFEKSLLCA--FSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTD 179 (406)
Q Consensus 102 lE~~~~~~e~ar~if~~al~~~--~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~ 179 (406)
+ ...++.+++..++.++.... +.....++ .+..... +. ++...+...|++|+... |
T Consensus 120 ~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~a~~~~-~~---------G~~~~A~~~~~~al~~~-------P 177 (280)
T PF13429_consen 120 Y-YRLGDYDEAEELLEKLEELPAAPDSARFWL----ALAEIYE-QL---------GDPDKALRDYRKALELD-------P 177 (280)
T ss_dssp H-HHTT-HHHHHHHHHHHHH-T---T-HHHHH----HHHHHHH-HC---------CHHHHHHHHHHHHHHH--------T
T ss_pred H-HHHhHHHHHHHHHHHHHhccCCCCCHHHHH----HHHHHHH-Hc---------CCHHHHHHHHHHHHHcC-------C
Confidence 3 34566777777776655432 11111111 1111110 11 33445666666666542 3
Q ss_pred hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHH
Q 015472 180 GLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHA 259 (406)
Q Consensus 180 ~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~ 259 (406)
.+..++..++.+....| +.+.++.++.......|+++.+|..++......|+++.|..+|++++.. .|. ...+...
T Consensus 178 ~~~~~~~~l~~~li~~~-~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p~--d~~~~~~ 253 (280)
T PF13429_consen 178 DDPDARNALAWLLIDMG-DYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NPD--DPLWLLA 253 (280)
T ss_dssp T-HHHHHHHHHHHCTTC-HHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-STT---HHHHHH
T ss_pred CCHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc-ccc--ccccccc
Confidence 33445555555555556 6666666666666666666666666666666666666676666666652 222 2455556
Q ss_pred HHHHHHHhCCHHHHHH
Q 015472 260 WLRFEREYGTLEDFDH 275 (406)
Q Consensus 260 ~i~fE~~~G~~e~~~~ 275 (406)
|...-...|..+....
T Consensus 254 ~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 254 YADALEQAGRKDEALR 269 (280)
T ss_dssp HHHHHT----------
T ss_pred cccccccccccccccc
Confidence 6666666666555443
No 33
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.23 E-value=4.1e-08 Score=97.39 Aligned_cols=226 Identities=12% Similarity=0.069 Sum_probs=121.8
Q ss_pred hcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCCHH
Q 015472 35 SSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV----GELWVRSLLSLERSRASEE 110 (406)
Q Consensus 35 ~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~----~~lW~~y~~~lE~~~~~~e 110 (406)
..|+++.+...|++++..+|.++.+|...+.++...+ ..+.+..++++++..-+.. ...|..++..+ ...++++
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~-~~~g~~~ 124 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRG-EVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY-LKAGLLD 124 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC-cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH-HHCCCHH
Confidence 4566677777777777777777777776666555433 4566777777666532221 13445555433 2356677
Q ss_pred HHHHHHHHHHhCccccHHHH---HHHHHHHHHH-----HHHHHhc--cccch---------------hhhhHHHHHHHHH
Q 015472 111 EISTVFEKSLLCAFSTFEEY---LDLFLTRIDG-----LRRRILF--SGEVE---------------GVLDYSLIRETFQ 165 (406)
Q Consensus 111 ~ar~if~~al~~~~~~~~~~---~~l~~~~~~~-----l~Rr~~~--~~~~e---------------~~~~~~~~r~~f~ 165 (406)
.|..+|.+++...+.....+ ..++....++ +.+++.. +.... ..+++..+...|+
T Consensus 125 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 125 RAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 77777777766433221111 1111110000 0001100 00000 0022233444444
Q ss_pred HHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 015472 166 RASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM-LEAWQSYISMEIELDHINEARSIYKRCY 244 (406)
Q Consensus 166 ~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~-~~lW~~y~~~E~~~g~~~~ar~l~~ral 244 (406)
+++.. .+.....+..++.+....| ++++|..+|++++...|.+ ..+|...+......|+++.|..++++++
T Consensus 205 ~al~~-------~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 205 KALAA-------DPQCVRASILLGDLALAQG-DYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHhH-------CcCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44332 2334456666777777777 7888888888888776654 3466666677777788888888888877
Q ss_pred hcccCCCChHHHHHHHHHHHHHhCCHHHHH
Q 015472 245 SKRFTGTGSEDICHAWLRFEREYGTLEDFD 274 (406)
Q Consensus 245 ~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~ 274 (406)
.. .|. . .++......-...|..+...
T Consensus 277 ~~-~p~--~-~~~~~la~~~~~~g~~~~A~ 302 (389)
T PRK11788 277 EE-YPG--A-DLLLALAQLLEEQEGPEAAQ 302 (389)
T ss_pred Hh-CCC--c-hHHHHHHHHHHHhCCHHHHH
Confidence 63 232 2 23355556666667665543
No 34
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.20 E-value=2.7e-08 Score=98.67 Aligned_cols=237 Identities=11% Similarity=0.060 Sum_probs=139.9
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcchhhhHHH
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS----SDLWLDYTQYLDKTLKVGNVVRD 79 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~----~~lW~~Y~~~l~~~~~~~e~a~~ 79 (406)
+...|+.++...| .+...|...+......|+++.+..+|++++...+.. ...|...+..+... +..+.|..
T Consensus 54 A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~-g~~~~A~~ 128 (389)
T PRK11788 54 AIDLFIEMLKVDP----ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA-GLLDRAEE 128 (389)
T ss_pred HHHHHHHHHhcCc----ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC-CCHHHHHH
Confidence 4456777777655 245677777777777777777777777777653222 23455555554443 35677777
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccH-----HHHHHHHHHH-----HH---HHHHHHh
Q 015472 80 VYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTF-----EEYLDLFLTR-----ID---GLRRRIL 146 (406)
Q Consensus 80 vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~-----~~~~~l~~~~-----~~---~l~Rr~~ 146 (406)
+|++++...|.....+..++..+ ...+++++|..+|.+++...+... ..+..+.... .+ ...++++
T Consensus 129 ~~~~~l~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 207 (389)
T PRK11788 129 LFLQLVDEGDFAEGALQQLLEIY-QQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKAL 207 (389)
T ss_pred HHHHHHcCCcchHHHHHHHHHHH-HHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 77777777776666676666533 346777777777777776543211 1111111100 00 0001111
Q ss_pred --ccccchhh---hhHHHHHHHHHHHHHHHhhhhcCCchH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHH
Q 015472 147 --FSGEVEGV---LDYSLIRETFQRASDYLSEQMKNTDGL-LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAW 220 (406)
Q Consensus 147 --~~~~~e~~---~~~~~~r~~f~~a~~~l~~~~~~~~~~-~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW 220 (406)
.+...... ...-....-+++|+..+.......+.. ..++...+......| +++.|...|++++...|+... .
T Consensus 208 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g-~~~~A~~~l~~~~~~~p~~~~-~ 285 (389)
T PRK11788 208 AADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALG-DEAEGLEFLRRALEEYPGADL-L 285 (389)
T ss_pred hHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCchH-H
Confidence 11111100 000011122333444333322212222 345666777778888 999999999999999987644 4
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcccC
Q 015472 221 QSYISMEIELDHINEARSIYKRCYSKRFT 249 (406)
Q Consensus 221 ~~y~~~E~~~g~~~~ar~l~~ral~~~~~ 249 (406)
...+.+....|+++.|..+|++++.. .|
T Consensus 286 ~~la~~~~~~g~~~~A~~~l~~~l~~-~P 313 (389)
T PRK11788 286 LALAQLLEEQEGPEAAQALLREQLRR-HP 313 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh-Cc
Confidence 88889999999999999999999984 44
No 35
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.19 E-value=2.1e-08 Score=109.79 Aligned_cols=99 Identities=6% Similarity=-0.046 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015472 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (406)
Q Consensus 22 ~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~ 101 (406)
....|..++..... |.+..+...|.+++...|.+.. .+..+..+.. .+..+.|...|++++..-|. ...|..++..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~-~L~lA~al~~-~Gr~eeAi~~~rka~~~~p~-~~a~~~la~a 551 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQ-HRAVAYQAYQ-VEDYATALAAWQKISLHDMS-NEDLLAAANT 551 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHH-HHHHHHHHHH-CCCHHHHHHHHHHHhccCCC-cHHHHHHHHH
Confidence 45566666665554 5666677777777777765432 2222222222 23566677777776555333 3445555543
Q ss_pred HHHccCCHHHHHHHHHHHHhCccc
Q 015472 102 LERSRASEEEISTVFEKSLLCAFS 125 (406)
Q Consensus 102 lE~~~~~~e~ar~if~~al~~~~~ 125 (406)
+ ...++.++|..+|.+++...|.
T Consensus 552 l-l~~Gd~~eA~~~l~qAL~l~P~ 574 (987)
T PRK09782 552 A-QAAGNGAARDRWLQQAEQRGLG 574 (987)
T ss_pred H-HHCCCHHHHHHHHHHHHhcCCc
Confidence 3 2356677777777777765544
No 36
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.15 E-value=3e-08 Score=111.80 Aligned_cols=91 Identities=9% Similarity=-0.038 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHH
Q 015472 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRF 263 (406)
Q Consensus 184 l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~f 263 (406)
.+...+......| +++.|..+|++++...|+++.++...+......|+++.|..+|++++.. .|. .+ ..+.....+
T Consensus 463 ~~~~~a~~~~~~g-~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~-~P~-~~-~~~~a~al~ 538 (1157)
T PRK11447 463 RLAQQAEALENQG-KWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ-KPN-DP-EQVYAYGLY 538 (1157)
T ss_pred HHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCC-CH-HHHHHHHHH
Confidence 4455666777788 8999999999999999999999999999999999999999999999974 343 23 344444445
Q ss_pred HHHhCCHHHHHHHHH
Q 015472 264 EREYGTLEDFDHSVQ 278 (406)
Q Consensus 264 E~~~G~~e~~~~a~~ 278 (406)
....|..+.....++
T Consensus 539 l~~~~~~~~Al~~l~ 553 (1157)
T PRK11447 539 LSGSDRDRAALAHLN 553 (1157)
T ss_pred HHhCCCHHHHHHHHH
Confidence 455566555433333
No 37
>PRK12370 invasion protein regulator; Provisional
Probab=99.12 E-value=2.3e-08 Score=104.18 Aligned_cols=214 Identities=9% Similarity=-0.125 Sum_probs=143.8
Q ss_pred hhhHHHHHHHhcCCCCChhhHHHHHHHHHHHH---------hcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcch
Q 015472 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQ---------SSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKV 73 (406)
Q Consensus 3 ~~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~---------~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~ 73 (406)
.+...|+.+|...|. ....|...+.... ..|+++.+...+++|+..+|.++..|..++..+...+ .
T Consensus 279 ~A~~~~~~Al~ldP~----~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g-~ 353 (553)
T PRK12370 279 QALKLLTQCVNMSPN----SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS-E 353 (553)
T ss_pred HHHHHHHHHHhcCCc----cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-C
Confidence 356678888887762 3334433322211 1234678999999999999999999998887665544 6
Q ss_pred hhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchh
Q 015472 74 GNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEG 153 (406)
Q Consensus 74 ~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~ 153 (406)
.+.|...|++|+..+|.+...|..++..+ ...|+.++|...|++++...|.....+..+. ..-+. .
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l-~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~--~~~~~---~-------- 419 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNL-FMAGQLEEALQTINECLKLDPTRAAAGITKL--WITYY---H-------- 419 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCCCChhhHHHHH--HHHHh---c--------
Confidence 78899999999999999988888888744 3578899999999999997765322211111 00000 0
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccH
Q 015472 154 VLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHI 233 (406)
Q Consensus 154 ~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~ 233 (406)
++++.+...|++++... .+.....+...+.+....| +++.|+..+.+++...|.....+...+......|
T Consensus 420 -g~~eeA~~~~~~~l~~~------~p~~~~~~~~la~~l~~~G-~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 489 (553)
T PRK12370 420 -TGIDDAIRLGDELRSQH------LQDNPILLSMQVMFLSLKG-KHELARKLTKEISTQEITGLIAVNLLYAEYCQNS-- 489 (553)
T ss_pred -cCHHHHHHHHHHHHHhc------cccCHHHHHHHHHHHHhCC-CHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--
Confidence 23345555565554431 1223345666777777788 8999999998888888877777766666666666
Q ss_pred HHHHHHHHHHHh
Q 015472 234 NEARSIYKRCYS 245 (406)
Q Consensus 234 ~~ar~l~~ral~ 245 (406)
+.+...+++.+.
T Consensus 490 ~~a~~~l~~ll~ 501 (553)
T PRK12370 490 ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHHH
Confidence 477777777665
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.12 E-value=8.6e-10 Score=104.80 Aligned_cols=221 Identities=15% Similarity=0.149 Sum_probs=80.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015472 26 YMIYLKYEQSSGDPGRVQLLYERAITDF--PVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLE 103 (406)
Q Consensus 26 w~~Yi~~E~~~g~~~~~~~lyEral~~~--P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE 103 (406)
...+.......|+++.|..++.+++... |.++++|..++..... .+..+.+..+|++.+...+.+......++..
T Consensus 11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~-~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-- 87 (280)
T PF13429_consen 11 ALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWS-LGDYDEAIEAYEKLLASDKANPQDYERLIQL-- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccc--
Confidence 4466777778899999999997776654 8899999999887764 3467889999999998887777777777764
Q ss_pred HccCCHHHHHHHHHHHHhCccc--cHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchH
Q 015472 104 RSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGL 181 (406)
Q Consensus 104 ~~~~~~e~ar~if~~al~~~~~--~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~ 181 (406)
...+++++|..+++++....+. .+..++.++.. ..++..+...+.++.... . .+.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~-----------------~~~~~~~~~~l~~~~~~~-~----~~~~ 145 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYR-----------------LGDYDEAEELLEKLEELP-A----APDS 145 (280)
T ss_dssp ------------------------------H-HHH-----------------TT-HHHHHHHHHHHHH-T--------T-
T ss_pred cccccccccccccccccccccccchhhHHHHHHHH-----------------HhHHHHHHHHHHHHHhcc-C----CCCC
Confidence 3567888888888888775432 22222222210 134445666666654321 1 2345
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHH
Q 015472 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWL 261 (406)
Q Consensus 182 ~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i 261 (406)
..+|..++.+....| +++.|..+|++++...|++..++..++.+.+..|+.+.++.++...... .|. ...+|..+.
T Consensus 146 ~~~~~~~a~~~~~~G-~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-~~~--~~~~~~~la 221 (280)
T PF13429_consen 146 ARFWLALAEIYEQLG-DPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA-APD--DPDLWDALA 221 (280)
T ss_dssp HHHHHHHHHHHHHCC-HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HT--SCCHCHHHH
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CcC--HHHHHHHHH
Confidence 678999999999999 8999999999999999999999999999999999999999999888764 333 235777777
Q ss_pred HHHHHhCCHHHHHH
Q 015472 262 RFEREYGTLEDFDH 275 (406)
Q Consensus 262 ~fE~~~G~~e~~~~ 275 (406)
.....-|+.+..-.
T Consensus 222 ~~~~~lg~~~~Al~ 235 (280)
T PF13429_consen 222 AAYLQLGRYEEALE 235 (280)
T ss_dssp HHHHHHT-HHHHHH
T ss_pred HHhccccccccccc
Confidence 77667787766433
No 39
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.12 E-value=2.1e-08 Score=109.69 Aligned_cols=240 Identities=12% Similarity=-0.033 Sum_probs=179.7
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHH
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyer 83 (406)
+...|..++...|. .. .....+......|+++.+...|++++...|. ...|..++..+...+ +.+.|...|++
T Consensus 495 Ai~a~~~Al~~~Pd----~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~G-d~~eA~~~l~q 567 (987)
T PRK09782 495 ALYAWLQAEQRQPD----AW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAG-NGAARDRWLQQ 567 (987)
T ss_pred HHHHHHHHHHhCCc----hH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCC-CHHHHHHHHHH
Confidence 45567778877762 22 2333344445789999999999998877554 556888887766544 67889999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHH
Q 015472 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRET 163 (406)
Q Consensus 84 A~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~ 163 (406)
|+...|....++..++..+. ..+++++|...|++++...|. ...+..+.... .+. ++++.+...
T Consensus 568 AL~l~P~~~~l~~~La~~l~-~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l-----~~l---------G~~deA~~~ 631 (987)
T PRK09782 568 AEQRGLGDNALYWWLHAQRY-IPGQPELALNDLTRSLNIAPS-ANAYVARATIY-----RQR---------HNVPAAVSD 631 (987)
T ss_pred HHhcCCccHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHH-----HHC---------CCHHHHHHH
Confidence 99999987777665443232 369999999999999998775 44454443221 111 456678889
Q ss_pred HHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 015472 164 FQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRC 243 (406)
Q Consensus 164 f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ra 243 (406)
|.+++.. .|.+..++..++.+....| +++.|..+|++++...|+++.+|...+......|+++.|...|+++
T Consensus 632 l~~AL~l-------~Pd~~~a~~nLG~aL~~~G-~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 632 LRAALEL-------EPNNSNYQAALGYALWDSG-DIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHh-------CCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9998776 3555678889998888899 8999999999999999999999999999999999999999999999
Q ss_pred HhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHH
Q 015472 244 YSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSV 277 (406)
Q Consensus 244 l~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~a~ 277 (406)
+.. - +....|-..+-.++..-++......++
T Consensus 704 l~l-~--P~~a~i~~~~g~~~~~~~~~~~a~~~~ 734 (987)
T PRK09782 704 IDD-I--DNQALITPLTPEQNQQRFNFRRLHEEV 734 (987)
T ss_pred Hhc-C--CCCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 974 2 335567777777766666555544444
No 40
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.06 E-value=1e-07 Score=98.26 Aligned_cols=240 Identities=16% Similarity=0.197 Sum_probs=162.2
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--cchhhhHHHHHHHHHHhCCCCHHHHHHH
Q 015472 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKT--LKVGNVVRDVYSRATKNCPWVGELWVRS 98 (406)
Q Consensus 21 ~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~--~~~~e~a~~vyerA~~~~P~~~~lW~~y 98 (406)
..+.....||....+.|+++.+...-..+...+|.++.+|+.|+.-+..- ......+...|++|+... .+..+|..|
T Consensus 111 y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy-~~v~iw~e~ 189 (881)
T KOG0128|consen 111 YKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY-NSVPIWEEV 189 (881)
T ss_pred cchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc-ccchHHHHH
Confidence 35667777788888899999999888889999999999999999754321 123456888999998633 355799999
Q ss_pred HHHHHHcc------CCHHHHHHHHHHHHhC-cc------ccHHHHHHHHHHHHHHHH-HHHh--------ccccch----
Q 015472 99 LLSLERSR------ASEEEISTVFEKSLLC-AF------STFEEYLDLFLTRIDGLR-RRIL--------FSGEVE---- 152 (406)
Q Consensus 99 ~~~lE~~~------~~~e~ar~if~~al~~-~~------~~~~~~~~l~~~~~~~l~-Rr~~--------~~~~~e---- 152 (406)
+.|+-... ++++..|.+|++||.. +. ..|..|+.+..+|+...+ |.+. .+-..+
T Consensus 190 ~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D~~~~~~ 269 (881)
T KOG0128|consen 190 VNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPLDEDTRGW 269 (881)
T ss_pred HHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhHH
Confidence 98765332 4578899999999984 22 146667766666554332 2221 111000
Q ss_pred hhhh------HHHHHHHHHHHHHHH-------hhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHH
Q 015472 153 GVLD------YSLIRETFQRASDYL-------SEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEA 219 (406)
Q Consensus 153 ~~~~------~~~~r~~f~~a~~~l-------~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~l 219 (406)
.+.. +......++.+++.+ ...+...+.....|+.|+++|...| ++.+...++++++...+.+.++
T Consensus 270 ~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G-~p~ri~l~~eR~~~E~~~~~~~ 348 (881)
T KOG0128|consen 270 DLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSG-DPVRIQLIEERAVAEMVLDRAL 348 (881)
T ss_pred HHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHhccccHHH
Confidence 0000 000111111121111 1111112345668999999999999 9999999999999999888999
Q ss_pred HHHHHHHH-HHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHH-HHH
Q 015472 220 WQSYISME-IELDHINEARSIYKRCYSKRFTGTGSEDICHAWLR-FER 265 (406)
Q Consensus 220 W~~y~~~E-~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~-fE~ 265 (406)
|+.|..+. +.++-.+.+..++-|++. .+| +.-.+|..++- |||
T Consensus 349 wi~y~~~~d~eLkv~~~~~~~~~ra~R-~cp--~tgdL~~rallAleR 393 (881)
T KOG0128|consen 349 WIGYGVYLDTELKVPQRGVSVHPRAVR-SCP--WTGDLWKRALLALER 393 (881)
T ss_pred Hhhhhhhcccccccccccccccchhhc-CCc--hHHHHHHHHHHHHHh
Confidence 99999874 456778888899999997 454 46789998873 444
No 41
>PRK12370 invasion protein regulator; Provisional
Probab=99.04 E-value=1.5e-07 Score=98.19 Aligned_cols=203 Identities=9% Similarity=-0.117 Sum_probs=145.7
Q ss_pred hhhHHHHHHHHHHH--Hhc---CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc--------chhhhHHHHHHHHHH
Q 015472 20 SEKFQQYMIYLKYE--QSS---GDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTL--------KVGNVVRDVYSRATK 86 (406)
Q Consensus 20 ~~~~~~w~~Yi~~E--~~~---g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~--------~~~e~a~~vyerA~~ 86 (406)
+.+++.|..|+.-. ... ++.+.+..+|++|+..+|.+...|...+....... +..+.|...+++|+.
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 34566666665532 222 34578999999999999999998877664322111 135789999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHH
Q 015472 87 NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQR 166 (406)
Q Consensus 87 ~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~ 166 (406)
..|.....|..++..+ ...+++++|...|++|+...|+....+..+..... . .++++.+...|++
T Consensus 333 ldP~~~~a~~~lg~~~-~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-----~---------~G~~~eAi~~~~~ 397 (553)
T PRK12370 333 LDHNNPQALGLLGLIN-TIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLF-----M---------AGQLEEALQTINE 397 (553)
T ss_pred cCCCCHHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----H---------CCCHHHHHHHHHH
Confidence 9999999999888644 45789999999999999988876554443322111 0 1445567777888
Q ss_pred HHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 015472 167 ASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS-GAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (406)
Q Consensus 167 a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~-~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~ 245 (406)
++..- |.....+...+......| +++.|...+++++... |+++..+...+.+....|+++.|+..+.+.+.
T Consensus 398 Al~l~-------P~~~~~~~~~~~~~~~~g-~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 398 CLKLD-------PTRAAAGITKLWITYYHT-GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHhcC-------CCChhhHHHHHHHHHhcc-CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 76652 222222222333344567 7999999999999885 77888888888888899999999999998765
No 42
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.04 E-value=6.6e-08 Score=92.75 Aligned_cols=199 Identities=13% Similarity=0.121 Sum_probs=140.1
Q ss_pred hhhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHH
Q 015472 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (406)
Q Consensus 3 ~~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vye 82 (406)
.++..|+.+|...| .....|...+......|+++.+...|++++..+|.+...|...+..+... +..+.|...|+
T Consensus 82 ~A~~~~~~Al~l~P----~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~-g~~~eA~~~~~ 156 (296)
T PRK11189 82 LARNDFSQALALRP----DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG-GRYELAQDDLL 156 (296)
T ss_pred HHHHHHHHHHHcCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHH
Confidence 45778889998887 35778999999999999999999999999999999999999998876654 47899999999
Q ss_pred HHHHhCCCCH--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHH--HHHHHHHHHHHHHHHhccccchhhhhHH
Q 015472 83 RATKNCPWVG--ELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEY--LDLFLTRIDGLRRRILFSGEVEGVLDYS 158 (406)
Q Consensus 83 rA~~~~P~~~--~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~--~~l~~~~~~~l~Rr~~~~~~~e~~~~~~ 158 (406)
+++...|... .+|... . ...++.++|...|.+++....+..+.. ..+.+ + ++.
T Consensus 157 ~al~~~P~~~~~~~~~~l---~-~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~l-----------g--------~~~ 213 (296)
T PRK11189 157 AFYQDDPNDPYRALWLYL---A-ESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYL-----------G--------KIS 213 (296)
T ss_pred HHHHhCCCCHHHHHHHHH---H-HccCCHHHHHHHHHHHHhhCCccccHHHHHHHHc-----------c--------CCC
Confidence 9999999875 455432 2 235789999999988775422221111 11110 0 000
Q ss_pred HHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHcc
Q 015472 159 LIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG-AMLEAWQSYISMEIELD 231 (406)
Q Consensus 159 ~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~-~~~~lW~~y~~~E~~~g 231 (406)
.. ..|+.+...+...+...+.....|.+.+.+....| +++.|+..|++++..+| +.++.=...++++...+
T Consensus 214 ~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g-~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 214 EE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLG-DLDEAAALFKLALANNVYNFVEHRYALLELALLGQ 285 (296)
T ss_pred HH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHh
Confidence 11 23333333222111113445678999999999999 99999999999999986 66666666666655433
No 43
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.03 E-value=7.5e-07 Score=96.42 Aligned_cols=95 Identities=8% Similarity=0.008 Sum_probs=75.3
Q ss_pred hhhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHH
Q 015472 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (406)
Q Consensus 3 ~~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vye 82 (406)
.+...|+.+|...|. +...|...+......|+++.+...+++++..+|.+.. |..++..+... +..+.|..+|+
T Consensus 67 ~A~~~~~~al~~~P~----~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~-g~~~~Al~~l~ 140 (765)
T PRK10049 67 NSLTLWQKALSLEPQ----NDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRA-GRHWDELRAMT 140 (765)
T ss_pred HHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHC-CCHHHHHHHHH
Confidence 355677888877662 4667777777778889999999999999999999998 88887766654 46788999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHH
Q 015472 83 RATKNCPWVGELWVRSLLSLE 103 (406)
Q Consensus 83 rA~~~~P~~~~lW~~y~~~lE 103 (406)
+|+...|....++..++..+.
T Consensus 141 ~al~~~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 141 QALPRAPQTQQYPTEYVQALR 161 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHH
Confidence 999999988888888776553
No 44
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.99 E-value=5.3e-07 Score=81.35 Aligned_cols=195 Identities=12% Similarity=0.059 Sum_probs=143.4
Q ss_pred CHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHH
Q 015472 56 SSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFL 135 (406)
Q Consensus 56 ~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~ 135 (406)
....+...+..+... +..+.+...|++++...|.....|...+..+ ...++++++...|++++...+.....+..+..
T Consensus 30 ~~~~~~~la~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQ-GDLEVAKENLDKALEHDPDDYLAYLALALYY-QQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCcccHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 466777777666544 4688999999999999999988888888644 45799999999999999976654333322221
Q ss_pred HHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Q 015472 136 TRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA 215 (406)
Q Consensus 136 ~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~ 215 (406)
... . .+++..+...|.+++... ..+....++..++......| +++.|...|++++...|+
T Consensus 108 ~~~-----~---------~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~ 167 (234)
T TIGR02521 108 FLC-----Q---------QGKYEQAMQQFEQAIEDP-----LYPQPARSLENAGLCALKAG-DFDKAEKYLTRALQIDPQ 167 (234)
T ss_pred HHH-----H---------cccHHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcC
Confidence 110 0 134556677777776531 11233456777888888889 999999999999999999
Q ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHH
Q 015472 216 MLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDH 275 (406)
Q Consensus 216 ~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~ 275 (406)
++..|..++.+....|+++.|..++++++.. .+ . ....+..........|+.+....
T Consensus 168 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~-~-~~~~~~~~~~~~~~~~~~~~a~~ 224 (234)
T TIGR02521 168 RPESLLELAELYYLRGQYKDARAYLERYQQT-YN-Q-TAESLWLGIRIARALGDVAAAQR 224 (234)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC-C-CHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999999999999999999974 33 2 23444456667777788766554
No 45
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.93 E-value=2.5e-06 Score=92.33 Aligned_cols=230 Identities=10% Similarity=0.012 Sum_probs=148.5
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHH
Q 015472 6 AHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRAT 85 (406)
Q Consensus 6 ~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~ 85 (406)
..|+.++...+ .....+...+......|+++.+..+|+++|...|.++.+|...+..+... +..+.|...+++++
T Consensus 36 ~~~~~~~~~~~----~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~-g~~~eA~~~l~~~l 110 (765)
T PRK10049 36 TVYNRYRVHMQ----LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADA-GQYDEALVKAKQLV 110 (765)
T ss_pred HHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHH
Confidence 45566655333 23556888888899999999999999999999999999999998877654 46788999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHH-----H----HHHHHHhc-cc---cch
Q 015472 86 KNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRI-----D----GLRRRILF-SG---EVE 152 (406)
Q Consensus 86 ~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~-----~----~l~Rr~~~-~~---~~e 152 (406)
...|.... |..++..+ ...++.++|...|++++...|.....++.+..... + .+ .++.. +. ...
T Consensus 111 ~~~P~~~~-~~~la~~l-~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l-~~~~~~p~~~~~l~ 187 (765)
T PRK10049 111 SGAPDKAN-LLALAYVY-KRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAI-DDANLTPAEKRDLE 187 (765)
T ss_pred HhCCCCHH-HHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH-HhCCCCHHHHHHHH
Confidence 99999989 98888755 45899999999999999988765443332221110 0 00 00000 00 000
Q ss_pred -----------------hhhhH---HHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 015472 153 -----------------GVLDY---SLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (406)
Q Consensus 153 -----------------~~~~~---~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~ 212 (406)
....+ ..+...|+.++......+...+..........-.....+ +++.|+..|++++..
T Consensus 188 ~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g-~~~eA~~~~~~ll~~ 266 (765)
T PRK10049 188 ADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD-RYKDVISEYQRLKAE 266 (765)
T ss_pred HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh-hHHHHHHHHHHhhcc
Confidence 00000 112222333322211111101111112221112234556 899999999999988
Q ss_pred c---cchHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 213 S---GAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 213 ~---~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
. |..+.+|+ +......|+++.|..+|++++..
T Consensus 267 ~~~~P~~a~~~l--a~~yl~~g~~e~A~~~l~~~l~~ 301 (765)
T PRK10049 267 GQIIPPWAQRWV--ASAYLKLHQPEKAQSILTELFYH 301 (765)
T ss_pred CCCCCHHHHHHH--HHHHHhcCCcHHHHHHHHHHhhc
Confidence 5 55566775 67788899999999999999863
No 46
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=3.4e-07 Score=89.63 Aligned_cols=213 Identities=14% Similarity=0.195 Sum_probs=163.4
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHH
Q 015472 32 YEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEE 111 (406)
Q Consensus 32 ~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ 111 (406)
|..-.|+.-.+...|..+|..+|..+.+++..+..+... ++.+.....|..|....|..++++...++ +....+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~-~~~~~~~~~F~~A~~ldp~n~dvYyHRgQ-m~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADE-NQSEKMWKDFNKAEDLDPENPDVYYHRGQ-MRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhh-hccHHHHHHHHHHHhcCCCCCchhHhHHH-HHHHHHHHHH
Confidence 344457888999999999999999999888777554433 25678899999999999999999999887 4445678999
Q ss_pred HHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHH
Q 015472 112 ISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHL 191 (406)
Q Consensus 112 ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~ 191 (406)
|..-|++|+...|..+..|+.+.... .|. ..+......|+++..-+ |.+.+++..||++
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~----Yr~----------~k~~~~m~~Fee~kkkF-------P~~~Evy~~fAei 471 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCAL----YRQ----------HKIAESMKTFEEAKKKF-------PNCPEVYNLFAEI 471 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHH----HHH----------HHHHHHHHHHHHHHHhC-------CCCchHHHHHHHH
Confidence 99999999999887666666554221 121 12345667888887754 4556788899999
Q ss_pred HHHcCCCHHHHHHHHHHHHHhccc------hHH--HHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHH
Q 015472 192 EQSMGKDMVSARGVWERLLKISGA------MLE--AWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRF 263 (406)
Q Consensus 192 e~~~~~d~~~Ar~ife~al~~~~~------~~~--lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~f 263 (406)
+...+ +++.|.+.|+.|+...|. ++. +....+-+--. +++..|..++.+|++. .+.++.-+...-+|
T Consensus 472 LtDqq-qFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~---Dpkce~A~~tlaq~ 546 (606)
T KOG0547|consen 472 LTDQQ-QFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIEL---DPKCEQAYETLAQF 546 (606)
T ss_pred HhhHH-hHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHcc---CchHHHHHHHHHHH
Confidence 99999 899999999999999776 433 33333322222 8999999999999974 45578888899999
Q ss_pred HHHhCCHHH
Q 015472 264 EREYGTLED 272 (406)
Q Consensus 264 E~~~G~~e~ 272 (406)
|...|+++.
T Consensus 547 ~lQ~~~i~e 555 (606)
T KOG0547|consen 547 ELQRGKIDE 555 (606)
T ss_pred HHHHhhHHH
Confidence 999998755
No 47
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.89 E-value=3.4e-07 Score=81.88 Aligned_cols=117 Identities=14% Similarity=0.141 Sum_probs=102.0
Q ss_pred hhhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHH
Q 015472 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (406)
Q Consensus 3 ~~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vye 82 (406)
.++..+|.+|..+|. .+..|.....+-.+.|..+.+..-|++||...|.+.++-.+|+-||...+ .++++..-|+
T Consensus 53 ~A~~nlekAL~~DPs----~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg-~~~eA~q~F~ 127 (250)
T COG3063 53 QAKKNLEKALEHDPS----YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG-RPEEAMQQFE 127 (250)
T ss_pred HHHHHHHHHHHhCcc----cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC-ChHHHHHHHH
Confidence 478899999999983 57899999999999999999999999999999999999999999999876 7899999999
Q ss_pred HHHH--hCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccc
Q 015472 83 RATK--NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (406)
Q Consensus 83 rA~~--~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~ 125 (406)
+|+. ..|.....|.+... +-.+.|..+.++..|+++|...+.
T Consensus 128 ~Al~~P~Y~~~s~t~eN~G~-Cal~~gq~~~A~~~l~raL~~dp~ 171 (250)
T COG3063 128 RALADPAYGEPSDTLENLGL-CALKAGQFDQAEEYLKRALELDPQ 171 (250)
T ss_pred HHHhCCCCCCcchhhhhhHH-HHhhcCCchhHHHHHHHHHHhCcC
Confidence 9996 44556678888776 434678999999999999987664
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=5.5e-07 Score=87.71 Aligned_cols=192 Identities=14% Similarity=0.106 Sum_probs=129.6
Q ss_pred chhhHHHHHHHhcCC---CCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHH
Q 015472 2 CNARAHLEEQISRQD---LSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVR 78 (406)
Q Consensus 2 ~~~R~~yE~~L~~~~---~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~ 78 (406)
|+.|..+|.++.-+. ..+|....+|.--+.--....+...|...|.|||..||.+...|...++..+. .+-+.-+.
T Consensus 340 YSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei-m~Mh~YaL 418 (559)
T KOG1155|consen 340 YSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI-MKMHFYAL 418 (559)
T ss_pred HHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH-hcchHHHH
Confidence 456666676665542 12344677897655444556678889999999999999999999999976653 34567799
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHH
Q 015472 79 DVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYS 158 (406)
Q Consensus 79 ~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~ 158 (406)
-.|++|+..-|++..+|...+...+ ..+..++|...|.+|+.++...-..++.+...+ +...+..
T Consensus 419 yYfqkA~~~kPnDsRlw~aLG~CY~-kl~~~~eAiKCykrai~~~dte~~~l~~LakLy--------------e~l~d~~ 483 (559)
T KOG1155|consen 419 YYFQKALELKPNDSRLWVALGECYE-KLNRLEEAIKCYKRAILLGDTEGSALVRLAKLY--------------EELKDLN 483 (559)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHH-HhccHHHHHHHHHHHHhccccchHHHHHHHHHH--------------HHHHhHH
Confidence 9999999999999999999999775 588899999999999997654222232222111 1124455
Q ss_pred HHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 015472 159 LIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLL 210 (406)
Q Consensus 159 ~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al 210 (406)
.+...|+++++...-.....+..+..-..+|.++...+ ++++|-..-.+++
T Consensus 484 eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~-~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 484 EAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMK-DFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhc-chHHHHHHHHHHh
Confidence 67778888777431111112333444444677777777 7777654444443
No 49
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.84 E-value=2.5e-07 Score=89.63 Aligned_cols=168 Identities=17% Similarity=0.232 Sum_probs=117.9
Q ss_pred hhhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCC------------hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 015472 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGD------------PGRVQLLYERAITDFPVSSDLWLDYTQYLDKT 70 (406)
Q Consensus 3 ~~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~------------~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~ 70 (406)
.+...|+..|...| ++.+.|+.|+.|-...-. .+.-..+|+|||..+|.+..||+.|+......
T Consensus 3 ~r~~el~~~v~~~P----~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~ 78 (321)
T PF08424_consen 3 KRTAELNRRVRENP----HDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKV 78 (321)
T ss_pred hHHHHHHHHHHhCc----ccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 34567888888887 468899999999755421 24567899999999999999999999987764
Q ss_pred cchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhcc
Q 015472 71 LKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSR--ASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFS 148 (406)
Q Consensus 71 ~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~--~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~ 148 (406)
. +.+.+..-+++++..+|.+..||..|+.+..... -+++.++.+|.+||........ .....
T Consensus 79 ~-~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~---------------~~~~~ 142 (321)
T PF08424_consen 79 W-DSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRS---------------GRMTS 142 (321)
T ss_pred C-CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhc---------------ccccc
Confidence 4 5677889999999999999999999998665432 3478888998888874221000 00000
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Q 015472 149 GEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS 213 (406)
Q Consensus 149 ~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~ 213 (406)
. .+ ...+ ....+.+...++.|+...| -.++|..+|+-.+..+
T Consensus 143 ~-----~~----~~~~-------------e~~~l~v~~r~~~fl~~aG-~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 143 H-----PD----LPEL-------------EEFMLYVFLRLCRFLRQAG-YTERAVALWQALLEFN 184 (321)
T ss_pred c-----cc----hhhH-------------HHHHHHHHHHHHHHHHHCC-chHHHHHHHHHHHHHH
Confidence 0 00 0000 0112346667777888888 7888988888888873
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=6.4e-07 Score=87.24 Aligned_cols=146 Identities=15% Similarity=0.133 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHHhCCCCHHHHHHHHH-HHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchh
Q 015472 75 NVVRDVYSRATKNCPWVGELWVRSLL-SLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEG 153 (406)
Q Consensus 75 e~a~~vyerA~~~~P~~~~lW~~y~~-~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~ 153 (406)
+.|...|+||++.+|....+|.-.+. ++| ..+...|-..|.+|+...|.+...++.+.+++- ++
T Consensus 347 EKAv~YFkRALkLNp~~~~aWTLmGHEyvE--mKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe------im------- 411 (559)
T KOG1155|consen 347 EKAVMYFKRALKLNPKYLSAWTLMGHEYVE--MKNTHAAIESYRRAVDINPRDYRAWYGLGQAYE------IM------- 411 (559)
T ss_pred HHHHHHHHHHHhcCcchhHHHHHhhHHHHH--hcccHHHHHHHHHHHhcCchhHHHHhhhhHHHH------Hh-------
Confidence 44555555555555555555555443 222 244444555555555554443333334433331 00
Q ss_pred hhhH-HHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHccc
Q 015472 154 VLDY-SLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDH 232 (406)
Q Consensus 154 ~~~~-~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~ 232 (406)
+. .-+.--|++|..+. |...++|...++....++ .++.|.++|.+++.............+++..+.++
T Consensus 412 --~Mh~YaLyYfqkA~~~k-------PnDsRlw~aLG~CY~kl~-~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d 481 (559)
T KOG1155|consen 412 --KMHFYALYYFQKALELK-------PNDSRLWVALGECYEKLN-RLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD 481 (559)
T ss_pred --cchHHHHHHHHHHHhcC-------CCchHHHHHHHHHHHHhc-cHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh
Confidence 00 01223445554432 223456666666666666 56666666666666655545555556666666666
Q ss_pred HHHHHHHHHHHHh
Q 015472 233 INEARSIYKRCYS 245 (406)
Q Consensus 233 ~~~ar~l~~ral~ 245 (406)
...|-..|++++.
T Consensus 482 ~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 482 LNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666665
No 51
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.76 E-value=3.9e-06 Score=83.93 Aligned_cols=89 Identities=11% Similarity=0.054 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHH
Q 015472 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLR 262 (406)
Q Consensus 183 ~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~ 262 (406)
.+...|+.+. .+ +++.+....++.++.+|+++.+.+.++.+....|+++.|+..|++++.. -| . ...+..+..
T Consensus 297 ~l~~l~~~l~--~~-~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~-~P--~-~~~~~~La~ 369 (398)
T PRK10747 297 RLVLLIPRLK--TN-NPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ-RP--D-AYDYAWLAD 369 (398)
T ss_pred HHHHHHhhcc--CC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CC--C-HHHHHHHHH
Confidence 4555565542 35 7888888888888888888888888888888888888888888888864 22 2 344556677
Q ss_pred HHHHhCCHHHHHHHHH
Q 015472 263 FEREYGTLEDFDHSVQ 278 (406)
Q Consensus 263 fE~~~G~~e~~~~a~~ 278 (406)
.....|..+.-..+.+
T Consensus 370 ~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 370 ALDRLHKPEEAAAMRR 385 (398)
T ss_pred HHHHcCCHHHHHHHHH
Confidence 7777787766544443
No 52
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=1.5e-06 Score=86.89 Aligned_cols=240 Identities=12% Similarity=0.064 Sum_probs=167.1
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHH
Q 015472 33 EQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEI 112 (406)
Q Consensus 33 E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~a 112 (406)
..+.|++..|.-+||-||..+|.+.+.|...+...-... ....+...+.||+...|..-.+-..++..+ ...+.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE-~E~~ai~AL~rcl~LdP~NleaLmaLAVSy-tNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENE-NEQNAISALRRCLELDPTNLEALMALAVSY-TNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhcc-chHHHHHHHHHHHhcCCccHHHHHHHHHHH-hhhhhHHHH
Confidence 456899999999999999999999999999887654332 446799999999999999888777766533 234555678
Q ss_pred HHHHHHHHhCccc--------------------cHHHHHHHHHHHHHHHHHHHhccccchhhhhH---HHHHHHHHHHHH
Q 015472 113 STVFEKSLLCAFS--------------------TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDY---SLIRETFQRASD 169 (406)
Q Consensus 113 r~if~~al~~~~~--------------------~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~---~~~r~~f~~a~~ 169 (406)
...+.+.|...|+ +...+..+-..+.+.. |......+.+...-+ --+...|+++++
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa-~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAA-RQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHH-HhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 8888888864332 0111112111111111 111000111100000 113456788888
Q ss_pred HHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccC
Q 015472 170 YLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFT 249 (406)
Q Consensus 170 ~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~ 249 (406)
.+..++...|....+|..++-.+.... .-..|...|.+|+...|....+|...+--.+.+|.+.+|...|-.||...-.
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~-~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGN-RSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCc-ccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 877777767888899999998877666 6789999999999999999999988888888999999999999999875211
Q ss_pred ----CC---ChHHHHHHHHHHHHHhCCHHHHHHH
Q 015472 250 ----GT---GSEDICHAWLRFEREYGTLEDFDHS 276 (406)
Q Consensus 250 ----~~---~~~~i~~~~i~fE~~~G~~e~~~~a 276 (406)
.+ .++.||+....+-...|..+.+..|
T Consensus 531 s~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 531 SRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred ccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 01 1367999888777778877755443
No 53
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.73 E-value=2.4e-05 Score=78.53 Aligned_cols=243 Identities=11% Similarity=0.004 Sum_probs=157.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015472 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS-DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLE 103 (406)
Q Consensus 25 ~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~-~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE 103 (406)
.+.--+......|+++.+...|++++...|.+. .+-..++......+ ..+.|...+++.+...|.+..++..++..+
T Consensus 120 ~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~-~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~- 197 (409)
T TIGR00540 120 NLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQN-ELHAARHGVDKLLEMAPRHKEVLKLAEEAY- 197 (409)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-
Confidence 444445666778999999999999999999875 67777887776544 688999999999999999998888887744
Q ss_pred HccCCHHHHHHHHHHHHhCccccHHHHH----HHHHHHHH---------HHHHHH-hcc----ccchh---hhhHHHHHH
Q 015472 104 RSRASEEEISTVFEKSLLCAFSTFEEYL----DLFLTRID---------GLRRRI-LFS----GEVEG---VLDYSLIRE 162 (406)
Q Consensus 104 ~~~~~~e~ar~if~~al~~~~~~~~~~~----~l~~~~~~---------~l~Rr~-~~~----~~~e~---~~~~~~~r~ 162 (406)
...++.+.+..++.+.++........+. ..+....+ .+..-. ..+ +...- ....-....
T Consensus 198 ~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g 277 (409)
T TIGR00540 198 IRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCD 277 (409)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCC
Confidence 4689999999999999976332111111 11111110 110000 001 00000 000000112
Q ss_pred HHHHHHHHHhhhhcCCchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchH--HHHHHHHHHHHHcccHHHH
Q 015472 163 TFQRASDYLSEQMKNTDGLLR----LYAYWAHLEQSMGKDMVSARGVWERLLKISGAML--EAWQSYISMEIELDHINEA 236 (406)
Q Consensus 163 ~f~~a~~~l~~~~~~~~~~~~----l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~--~lW~~y~~~E~~~g~~~~a 236 (406)
-+++|...+...+...|++.. +...+..+ ..+ +...+...++++++.+|+++ .+...++.+..+.|+++.|
T Consensus 278 ~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l--~~~-~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A 354 (409)
T TIGR00540 278 DHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRL--KPE-DNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEA 354 (409)
T ss_pred ChHHHHHHHHHHHhhCCCcccchhHHHHHhhhc--CCC-ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHH
Confidence 234455544444433333321 33333322 234 78899999999999999999 8888999999999999999
Q ss_pred HHHHHH--HHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHH
Q 015472 237 RSIYKR--CYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHS 276 (406)
Q Consensus 237 r~l~~r--al~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~a 276 (406)
+..|++ ++.. .+.++ ++..+...-...|+.+.....
T Consensus 355 ~~~le~a~a~~~---~p~~~-~~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 355 ADAFKNVAACKE---QLDAN-DLAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred HHHHHHhHHhhc---CCCHH-HHHHHHHHHHHcCCHHHHHHH
Confidence 999994 5553 22344 455888888888987776543
No 54
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=2.4e-06 Score=83.76 Aligned_cols=234 Identities=13% Similarity=0.102 Sum_probs=154.2
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHH
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyer 83 (406)
+-..|..+|.-.|. ..+.|+..........+.+.-...|..|...+|.+++++...+.+..-. ...+.|..=|++
T Consensus 345 a~~d~~~~I~l~~~----~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL-~q~e~A~aDF~K 419 (606)
T KOG0547|consen 345 AQEDFDAAIKLDPA----FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLL-QQYEEAIADFQK 419 (606)
T ss_pred hhhhHHHHHhcCcc----cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHH-HHHHHHHHHHHH
Confidence 34456666666652 2333444444444556778888999999999999999999998755432 367899999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHH
Q 015472 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRET 163 (406)
Q Consensus 84 A~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~ 163 (406)
|++..|.+.--+++... +.-+.+.++++...|+.+...-|...+.| .+|- +-|. +-.++..+...
T Consensus 420 ai~L~pe~~~~~iQl~~-a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy-~~fA---eiLt----------DqqqFd~A~k~ 484 (606)
T KOG0547|consen 420 AISLDPENAYAYIQLCC-ALYRQHKIAESMKTFEEAKKKFPNCPEVY-NLFA---EILT----------DQQQFDKAVKQ 484 (606)
T ss_pred HhhcChhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCCchHH-HHHH---HHHh----------hHHhHHHHHHH
Confidence 99999988777777664 33346789999999999998655433332 2221 1111 01334456666
Q ss_pred HHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 015472 164 FQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRC 243 (406)
Q Consensus 164 f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ra 243 (406)
|+.|++.-+..-...- +....+.-|-+..+-.+|+..|..+..+|+..+|..--.....++|+..+|++++|..+|+++
T Consensus 485 YD~ai~LE~~~~~~~v-~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 485 YDKAIELEPREHLIIV-NAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHHHHhhccccccccc-cchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 7777664211000000 011111112222222248999999999999999998889999999999999999999999999
Q ss_pred HhcccCCCChHHHHHHHH
Q 015472 244 YSKRFTGTGSEDICHAWL 261 (406)
Q Consensus 244 l~~~~~~~~~~~i~~~~i 261 (406)
... ..+ .....++|.
T Consensus 564 a~l--Art-~~E~~~a~s 578 (606)
T KOG0547|consen 564 AQL--ART-ESEMVHAYS 578 (606)
T ss_pred HHH--HHh-HHHHHHHHH
Confidence 763 222 344555543
No 55
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=9.5e-07 Score=82.65 Aligned_cols=204 Identities=19% Similarity=0.196 Sum_probs=125.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHH
Q 015472 31 KYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEE 110 (406)
Q Consensus 31 ~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e 110 (406)
......|-+.++..-++.+|+.+|. ++..+-..+...+ .+.+..|..+|...+..+|....+-..-++-.| ..+..+
T Consensus 231 kCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~r-idQP~~AL~~~~~gld~fP~~VT~l~g~ARi~e-am~~~~ 307 (478)
T KOG1129|consen 231 KCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQR-IDQPERALLVIGEGLDSFPFDVTYLLGQARIHE-AMEQQE 307 (478)
T ss_pred HHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHH-hccHHHHHHHHhhhhhcCCchhhhhhhhHHHHH-HHHhHH
Confidence 3344456666666666666666653 3332222222221 234566666666666666665554444444222 345566
Q ss_pred HHHHHHHHHHhCccccHHHHH------------HHHHHHHHHHHHHHhccc--cchhh----------hhHHHHHHHHHH
Q 015472 111 EISTVFEKSLLCAFSTFEEYL------------DLFLTRIDGLRRRILFSG--EVEGV----------LDYSLIRETFQR 166 (406)
Q Consensus 111 ~ar~if~~al~~~~~~~~~~~------------~l~~~~~~~l~Rr~~~~~--~~e~~----------~~~~~~r~~f~~ 166 (406)
.+.++|..+++..+..++... .+-+.+ .||++..+ +-+-. ..++.+...|++
T Consensus 308 ~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alry----YRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 308 DALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRY----YRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHH----HHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 666666666664432221110 000111 13333211 10111 223456778888
Q ss_pred HHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 167 ASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 167 a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
|+.... +.+.-.++|.+.+.+....| |+..|...|.-|+..++++.+...+.+-++.+.|+++.||++|.-|.+.
T Consensus 384 Alstat----~~~~aaDvWYNlg~vaV~iG-D~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 384 ALSTAT----QPGQAADVWYNLGFVAVTIG-DFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHhhcc----CcchhhhhhhccceeEEecc-chHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 877542 12334679999998888889 9999999999999999999999999999999999999999999999874
No 56
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=7.5e-07 Score=88.90 Aligned_cols=211 Identities=14% Similarity=0.118 Sum_probs=136.3
Q ss_pred CHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHH
Q 015472 56 SSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFL 135 (406)
Q Consensus 56 ~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~ 135 (406)
.++-...=+.++. .| +...|.-.||-||...|...+.|..++. ....+++...+...+.+|++..|+....+..|-.
T Consensus 285 ~pdPf~eG~~lm~-nG-~L~~A~LafEAAVkqdP~haeAW~~LG~-~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAV 361 (579)
T KOG1125|consen 285 HPDPFKEGCNLMK-NG-DLSEAALAFEAAVKQDPQHAEAWQKLGI-TQAENENEQNAISALRRCLELDPTNLEALMALAV 361 (579)
T ss_pred CCChHHHHHHHHh-cC-CchHHHHHHHHHHhhChHHHHHHHHhhh-HhhhccchHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 3344444344433 45 4677889999999999999999999886 4445677788999999999998875544433332
Q ss_pred HHH---------HHHHHH--Hh-------cc--c-------cchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHH
Q 015472 136 TRI---------DGLRRR--IL-------FS--G-------EVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYW 188 (406)
Q Consensus 136 ~~~---------~~l~Rr--~~-------~~--~-------~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~ 188 (406)
.++ ..|..- .- .. . .......+..+...|-.+..... .....++...+
T Consensus 362 SytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~-----~~~DpdvQ~~L 436 (579)
T KOG1125|consen 362 SYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLP-----TKIDPDVQSGL 436 (579)
T ss_pred HHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCC-----CCCChhHHhhh
Confidence 221 122110 00 00 0 00011122345566666544321 01234567777
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhC
Q 015472 189 AHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYG 268 (406)
Q Consensus 189 a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G 268 (406)
+-+....+ ++++|..+|+.||...|+++.+|..+..-...-.....|.+.|.|||+. -| .+-.++..+--.+=
T Consensus 437 GVLy~ls~-efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL-qP-----~yVR~RyNlgIS~m 509 (579)
T KOG1125|consen 437 GVLYNLSG-EFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL-QP-----GYVRVRYNLGISCM 509 (579)
T ss_pred HHHHhcch-HHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc-CC-----Ceeeeehhhhhhhh
Confidence 76666666 9999999999999999999999999999888888999999999999984 12 23334444444444
Q ss_pred CHHHHHHHHHhhc
Q 015472 269 TLEDFDHSVQKVT 281 (406)
Q Consensus 269 ~~e~~~~a~~k~~ 281 (406)
++-.+..|+....
T Consensus 510 NlG~ykEA~~hlL 522 (579)
T KOG1125|consen 510 NLGAYKEAVKHLL 522 (579)
T ss_pred hhhhHHHHHHHHH
Confidence 5555666665553
No 57
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.69 E-value=2.4e-06 Score=82.84 Aligned_cols=169 Identities=16% Similarity=0.210 Sum_probs=113.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcc-----------hhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHH
Q 015472 44 LLYERAITDFPVSSDLWLDYTQYLDKTLK-----------VGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEI 112 (406)
Q Consensus 44 ~lyEral~~~P~~~~lW~~Y~~~l~~~~~-----------~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~a 112 (406)
.-|++.|..+|.+++.|+.|+.|-+.... ..+.-..+|+||++++|.+..||..|+...+ ...+.+.+
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~-~~~~~~~l 84 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGE-KVWDSEKL 84 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCCHHHH
Confidence 56899999999999999999999876432 1245678999999999999999999998554 35577778
Q ss_pred HHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHH
Q 015472 113 STVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLE 192 (406)
Q Consensus 113 r~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e 192 (406)
..-+++++...+. ...+|..++++...+... -.+..++.+|.+|+..+....... .
T Consensus 85 ~~~we~~l~~~~~----~~~LW~~yL~~~q~~~~~-------f~v~~~~~~y~~~l~~L~~~~~~~-------------~ 140 (321)
T PF08424_consen 85 AKKWEELLFKNPG----SPELWREYLDFRQSNFAS-------FTVSDVRDVYEKCLRALSRRRSGR-------------M 140 (321)
T ss_pred HHHHHHHHHHCCC----ChHHHHHHHHHHHHHhcc-------CcHHHHHHHHHHHHHHHHHhhccc-------------c
Confidence 8888888876553 234455444444322110 123466777777776653211000 0
Q ss_pred HHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Q 015472 193 QSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRF 248 (406)
Q Consensus 193 ~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~ 248 (406)
.... +.. ........+.+.+..|+...|..++|.++++-.+..+|
T Consensus 141 ~~~~-~~~----------~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 141 TSHP-DLP----------ELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred cccc-chh----------hHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 0000 110 01122356788899999999999999999999988765
No 58
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=98.68 E-value=4.9e-08 Score=90.42 Aligned_cols=135 Identities=22% Similarity=0.370 Sum_probs=108.6
Q ss_pred chhhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhc-------------C---------ChhHHHHHHHHHHhcCCCCHHH
Q 015472 2 CNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSS-------------G---------DPGRVQLLYERAITDFPVSSDL 59 (406)
Q Consensus 2 ~~~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~-------------g---------~~~~~~~lyEral~~~P~~~~l 59 (406)
...|..||..|.+... .+.-|+.||.+|... | -+.++..+|.|+...+|.++.+
T Consensus 34 vktRr~fE~rL~rr~~----klnDf~~YI~yE~nleklRaKR~Kr~~v~~K~s~sD~sipqk~~f~~~R~tnkff~D~k~ 109 (435)
T COG5191 34 VKTRRKFELRLQRREK----KLNDFMRYIKYECNLEKLRAKRVKRKKVGKKASFSDMSIPQKKIFELYRSTNKFFNDPKI 109 (435)
T ss_pred HHHHHHHHHHHhcccc----hHHHHHHHHHHHhhHHHHHHHHHHHHHhcccccchhccccceeeEeeehhhhcCCCCcHH
Confidence 4679999999999763 577899999997532 1 1246678899999999999999
Q ss_pred HHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccc---cHHHHHHHHHH
Q 015472 60 WLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS---TFEEYLDLFLT 136 (406)
Q Consensus 60 W~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~---~~~~~~~l~~~ 136 (406)
|.+|+.|..... ....+..+|-.+++.+|...+||+-...+--...++++.+|.+|.++|...+. .|-+|+.+.+.
T Consensus 110 w~~y~~Y~~k~k-~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~El~ 188 (435)
T COG5191 110 WSQYAAYVIKKK-MYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRMELM 188 (435)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHHHHH
Confidence 999999998653 67789999999999999999999986553223479999999999999997653 56678888777
Q ss_pred HHHHH
Q 015472 137 RIDGL 141 (406)
Q Consensus 137 ~~~~l 141 (406)
++.-|
T Consensus 189 yiTKL 193 (435)
T COG5191 189 YITKL 193 (435)
T ss_pred HHHHH
Confidence 66544
No 59
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=6.4e-06 Score=82.15 Aligned_cols=254 Identities=13% Similarity=0.147 Sum_probs=169.2
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHh
Q 015472 8 LEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKN 87 (406)
Q Consensus 8 yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~ 87 (406)
.+..|...|+ +.....-+|.-....|+..+...+=-+.|..+|.++--|..-+.|....+ ...+||..|.+|+..
T Consensus 267 t~~lle~dpf----h~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~-k~seARry~SKat~l 341 (611)
T KOG1173|consen 267 TEELLEKDPF----HLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIG-KYSEARRYFSKATTL 341 (611)
T ss_pred hHHHHhhCCC----CcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhc-CcHHHHHHHHHHhhc
Confidence 4444555553 44455566666666788777777778888889999999999888776554 467799999999999
Q ss_pred CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccc--cHHHHHHHHHHHHHHHH--HH------Hhcccc------c
Q 015472 88 CPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLR--RR------ILFSGE------V 151 (406)
Q Consensus 88 ~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~--~~~~~~~l~~~~~~~l~--Rr------~~~~~~------~ 151 (406)
.|..+..|+.|+..+- ..+..+.+-..|.+|-+.-++ .+..|+.+.-.+.+.+. .+ .+.+.. +
T Consensus 342 D~~fgpaWl~fghsfa-~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~El 420 (611)
T KOG1173|consen 342 DPTFGPAWLAFGHSFA-GEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHEL 420 (611)
T ss_pred CccccHHHHHHhHHhh-hcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhh
Confidence 9988999999998664 356778888888888875332 33445544422222111 11 111211 0
Q ss_pred h----hhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 015472 152 E----GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISME 227 (406)
Q Consensus 152 e----~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E 227 (406)
. ...++..+...|+.++............+..+|.+.+.....++ ....|...|+++|...|.++..+..-+-..
T Consensus 421 gvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~-~~~eAI~~~q~aL~l~~k~~~~~asig~iy 499 (611)
T KOG1173|consen 421 GVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN-KYEEAIDYYQKALLLSPKDASTHASIGYIY 499 (611)
T ss_pred hheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh-hHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Confidence 0 12344456666666664332211112235668889999999999 799999999999999999988887776667
Q ss_pred HHcccHHHHHHHHHHHHhcccCCC-ChHHHHHHHHHH-HHHhCC
Q 015472 228 IELDHINEARSIYKRCYSKRFTGT-GSEDICHAWLRF-EREYGT 269 (406)
Q Consensus 228 ~~~g~~~~ar~l~~ral~~~~~~~-~~~~i~~~~i~f-E~~~G~ 269 (406)
...|+++.|...|.+||-.. |.. -...+....|+- +...|.
T Consensus 500 ~llgnld~Aid~fhKaL~l~-p~n~~~~~lL~~aie~~~~~~~~ 542 (611)
T KOG1173|consen 500 HLLGNLDKAIDHFHKALALK-PDNIFISELLKLAIEDSECKSGV 542 (611)
T ss_pred HHhcChHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhhhhhccc
Confidence 77899999999999999752 221 123455555553 444554
No 60
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.65 E-value=8.1e-05 Score=74.46 Aligned_cols=227 Identities=11% Similarity=-0.003 Sum_probs=127.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015472 26 YMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD-LWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER 104 (406)
Q Consensus 26 w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~-lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~ 104 (406)
+..-.......|+++.+...|+++....|.+.- ....-+.+.... ++.+.|...+++++...|.+..+....+..+ .
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~-g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~-~ 198 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLAR-NENHAARHGVDKLLEVAPRHPEVLRLAEQAY-I 198 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-H
Confidence 343345556788999999999999988887642 222324444433 4678899999999999998887766666533 4
Q ss_pred ccCCHHHHHHHHHHHHhCccccHHHHHHHH-HHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHH
Q 015472 105 SRASEEEISTVFEKSLLCAFSTFEEYLDLF-LTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLR 183 (406)
Q Consensus 105 ~~~~~e~ar~if~~al~~~~~~~~~~~~l~-~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~ 183 (406)
..++.+++..++.+..+.........-.+. ..++.-+. ..... .....+.++++.++.. .+....
T Consensus 199 ~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~-~~~~~----------~~~~~l~~~w~~lp~~---~~~~~~ 264 (398)
T PRK10747 199 RTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMD-QAMAD----------QGSEGLKRWWKNQSRK---TRHQVA 264 (398)
T ss_pred HHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH-HHHHh----------cCHHHHHHHHHhCCHH---HhCCHH
Confidence 568899999888888875432222221111 01110010 00000 0011222222222111 123345
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHH
Q 015472 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRF 263 (406)
Q Consensus 184 l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~f 263 (406)
++..|+......| +.+.|..+.+++++. +.++.+...|..+ ..++.+.+....++.+++ .|. ...+...+-.+
T Consensus 265 ~~~~~A~~l~~~g-~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~-~P~--~~~l~l~lgrl 337 (398)
T PRK10747 265 LQVAMAEHLIECD-DHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQ-HGD--TPLLWSTLGQL 337 (398)
T ss_pred HHHHHHHHHHHCC-CHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhh-CCC--CHHHHHHHHHH
Confidence 6666777776777 677777777777764 3345555555554 236677777777776653 343 23455555555
Q ss_pred HHHhCCHHHHHH
Q 015472 264 EREYGTLEDFDH 275 (406)
Q Consensus 264 E~~~G~~e~~~~ 275 (406)
....|.....+.
T Consensus 338 ~~~~~~~~~A~~ 349 (398)
T PRK10747 338 LMKHGEWQEASL 349 (398)
T ss_pred HHHCCCHHHHHH
Confidence 555555544333
No 61
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.64 E-value=1.3e-05 Score=80.48 Aligned_cols=218 Identities=11% Similarity=-0.007 Sum_probs=145.0
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHH----
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRD---- 79 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~---- 79 (406)
+...|+.++...|. ..+.+-..+.......|+++.+...+++.+...|.++.++..++......+ +.+.+..
T Consensus 137 A~~~l~~a~~~~p~---~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~-d~~~a~~~l~~ 212 (409)
T TIGR00540 137 ANQHLEEAAELAGN---DNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSG-AWQALDDIIDN 212 (409)
T ss_pred HHHHHHHHHHhCCc---CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 45677777776652 124456666777788899999999999999999999888777776555433 2222222
Q ss_pred ----------------------------------HHHHHHHhCC----CCHHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 015472 80 ----------------------------------VYSRATKNCP----WVGELWVRSLLSLERSRASEEEISTVFEKSLL 121 (406)
Q Consensus 80 ----------------------------------vyerA~~~~P----~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~ 121 (406)
.+..+....| .+..++..++..+ ...++.+.|..+++++++
T Consensus 213 l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l-~~~g~~~~A~~~l~~~l~ 291 (409)
T TIGR00540 213 MAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHL-IDCDDHDSAQEIIFDGLK 291 (409)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHH-HHCCChHHHHHHHHHHHh
Confidence 3333344455 3567777777644 457788888888888888
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHH--HHHHHHHHHHHHcCCCH
Q 015472 122 CAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLL--RLYAYWAHLEQSMGKDM 199 (406)
Q Consensus 122 ~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~--~l~~~~a~~e~~~~~d~ 199 (406)
..|+.....+.+..... .+.+ .+...+...++++++. .|.+. .+...++.+....| ++
T Consensus 292 ~~pd~~~~~~~~l~~~~------~l~~------~~~~~~~~~~e~~lk~-------~p~~~~~~ll~sLg~l~~~~~-~~ 351 (409)
T TIGR00540 292 KLGDDRAISLPLCLPIP------RLKP------EDNEKLEKLIEKQAKN-------VDDKPKCCINRALGQLLMKHG-EF 351 (409)
T ss_pred hCCCcccchhHHHHHhh------hcCC------CChHHHHHHHHHHHHh-------CCCChhHHHHHHHHHHHHHcc-cH
Confidence 65543211111110000 0011 1223445555555443 33334 78889999999999 99
Q ss_pred HHHHHHHH--HHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Q 015472 200 VSARGVWE--RLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKR 247 (406)
Q Consensus 200 ~~Ar~ife--~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~ 247 (406)
++|++.|+ .++...|+... +..++.+....|+.+.|+.+|++++...
T Consensus 352 ~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 352 IEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred HHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999999 57778888766 5599999999999999999999998743
No 62
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.64 E-value=8.7e-05 Score=82.36 Aligned_cols=90 Identities=9% Similarity=-0.016 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHH
Q 015472 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKI-SGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWL 261 (406)
Q Consensus 183 ~l~~~~a~~e~~~~~d~~~Ar~ife~al~~-~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i 261 (406)
..+...+......| +++.|..+|+..... ...+...|...+....+.|+++.|..+|+......+.. ....|...+
T Consensus 685 ~tynsLI~ay~k~G-~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P--d~~Ty~sLL 761 (1060)
T PLN03218 685 VSYSSLMGACSNAK-NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP--NTITYSILL 761 (1060)
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Confidence 34555555555555 566666666655443 11124456666666666666666666666555432221 234455555
Q ss_pred HHHHHhCCHHHHHH
Q 015472 262 RFEREYGTLEDFDH 275 (406)
Q Consensus 262 ~fE~~~G~~e~~~~ 275 (406)
.-....|.++....
T Consensus 762 ~a~~k~G~le~A~~ 775 (1060)
T PLN03218 762 VASERKDDADVGLD 775 (1060)
T ss_pred HHHHHCCCHHHHHH
Confidence 55555566555443
No 63
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.63 E-value=8.9e-05 Score=82.28 Aligned_cols=80 Identities=5% Similarity=0.006 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHH
Q 015472 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKI--SGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICH 258 (406)
Q Consensus 181 ~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~--~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~ 258 (406)
....|...+......| ++++|..+|+..... .|+ ...|...+....+.|+++.|..+|..++...+.. ...++.
T Consensus 718 dvvtyN~LI~gy~k~G-~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~p--d~~tyn 793 (1060)
T PLN03218 718 TVSTMNALITALCEGN-QLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDDADVGLDLLSQAKEDGIKP--NLVMCR 793 (1060)
T ss_pred CHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC--CHHHHH
Confidence 3445666666666666 777777777776654 233 3445555566666777777777777776643322 234555
Q ss_pred HHHHHH
Q 015472 259 AWLRFE 264 (406)
Q Consensus 259 ~~i~fE 264 (406)
..+.+.
T Consensus 794 sLIglc 799 (1060)
T PLN03218 794 CITGLC 799 (1060)
T ss_pred HHHHHH
Confidence 555554
No 64
>PLN02789 farnesyltranstransferase
Probab=98.63 E-value=1.1e-05 Score=77.93 Aligned_cols=199 Identities=11% Similarity=-0.023 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015472 24 QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLE 103 (406)
Q Consensus 24 ~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE 103 (406)
++|.-+-......+..++|..++..+|..+|.+..+|......+...+...+.+...+++++..+|.+..+|......++
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~ 117 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH
Confidence 34444444445567889999999999999999999999988887765435678999999999999999999998775555
Q ss_pred HccCC-HHHHHHHHHHHHhCcccc--HHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCch
Q 015472 104 RSRAS-EEEISTVFEKSLLCAFST--FEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDG 180 (406)
Q Consensus 104 ~~~~~-~e~ar~if~~al~~~~~~--~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~ 180 (406)
..+.. .+++..++.+++...+.. +|.+....+.. ...|+++++++...+...+.
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~-----------------------l~~~~eeL~~~~~~I~~d~~ 174 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRT-----------------------LGGWEDELEYCHQLLEEDVR 174 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-----------------------hhhHHHHHHHHHHHHHHCCC
Confidence 43322 366788888999877653 33322211110 11244444444444433445
Q ss_pred HHHHHHHHHHHHHHc---CC---CHHHHHHHHHHHHHhccchHHHHHHHHHHHHHc----ccHHHHHHHHHHHHh
Q 015472 181 LLRLYAYWAHLEQSM---GK---DMVSARGVWERLLKISGAMLEAWQSYISMEIEL----DHINEARSIYKRCYS 245 (406)
Q Consensus 181 ~~~l~~~~a~~e~~~---~~---d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~----g~~~~ar~l~~ral~ 245 (406)
+...|..-..+.... ++ ..+.+.....++|..+|++...|....-+.... +....|...+..++.
T Consensus 175 N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 175 NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 556776655444333 21 134677778899999999999998888777663 344567777777765
No 65
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=5.9e-06 Score=83.84 Aligned_cols=172 Identities=12% Similarity=0.089 Sum_probs=76.6
Q ss_pred HhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHH
Q 015472 50 ITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEE 129 (406)
Q Consensus 50 l~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~ 129 (406)
+..+|++|.-|...+.+...+ ++.+.|.+.|+||++..|...-.+.....-+ .....++.|...|..||...+.....
T Consensus 414 i~~~~~sPesWca~GNcfSLQ-kdh~~Aik~f~RAiQldp~faYayTLlGhE~-~~~ee~d~a~~~fr~Al~~~~rhYnA 491 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQ-KDHDTAIKCFKRAIQLDPRFAYAYTLLGHES-IATEEFDKAMKSFRKALGVDPRHYNA 491 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhh-hHHHHHHHHHHHhhccCCccchhhhhcCChh-hhhHHHHhHHHHHHhhhcCCchhhHH
Confidence 333455555555555544322 2445555555555555554322222212100 11233555555555555554433333
Q ss_pred HHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 015472 130 YLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERL 209 (406)
Q Consensus 130 ~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~a 209 (406)
++.+.+.+. + ...++.+.-.|++|++. +|.+..+...++.++..+| ..++|..+|++|
T Consensus 492 wYGlG~vy~---K-----------qek~e~Ae~~fqkA~~I-------NP~nsvi~~~~g~~~~~~k-~~d~AL~~~~~A 549 (638)
T KOG1126|consen 492 WYGLGTVYL---K-----------QEKLEFAEFHFQKAVEI-------NPSNSVILCHIGRIQHQLK-RKDKALQLYEKA 549 (638)
T ss_pred HHhhhhhee---c-----------cchhhHHHHHHHhhhcC-------CccchhHHhhhhHHHHHhh-hhhHHHHHHHHH
Confidence 333332211 0 01122233334444332 3444444445555555555 555555666666
Q ss_pred HHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 015472 210 LKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (406)
Q Consensus 210 l~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~ 245 (406)
+..+|.++---..-+......++++.|...++..-.
T Consensus 550 ~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 550 IHLDPKNPLCKYHRASILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 655555544333444444455555555555555544
No 66
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.59 E-value=4e-05 Score=80.30 Aligned_cols=248 Identities=17% Similarity=0.145 Sum_probs=153.8
Q ss_pred hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHH----
Q 015472 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELW---- 95 (406)
Q Consensus 20 ~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW---- 95 (406)
|.+.+.|....+.-.+.|++.+|+.+|-|||..+|.+..+-..++..+.+.| ....|...|.+++..+|.+.-.|
T Consensus 204 p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G-~~~~Am~~f~~l~~~~p~~d~er~~d~ 282 (895)
T KOG2076|consen 204 PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTG-DLKRAMETFLQLLQLDPPVDIERIEDL 282 (895)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-hHHHHHHHHHHHHhhCCchhHHHHHHH
Confidence 3456788888888888899999999999999999988888888888777655 56778889999999888543222
Q ss_pred -HHHHHHHHHccCCHHHHHHHHHHHHhCcc-----ccHHHHHHHHHHHHHHHH--H-----HH--hccccc---------
Q 015472 96 -VRSLLSLERSRASEEEISTVFEKSLLCAF-----STFEEYLDLFLTRIDGLR--R-----RI--LFSGEV--------- 151 (406)
Q Consensus 96 -~~y~~~lE~~~~~~e~ar~if~~al~~~~-----~~~~~~~~l~~~~~~~l~--R-----r~--~~~~~~--------- 151 (406)
..++.++-. .+..+.|-++++.++.... +....++.+++..-.+-+ + +. ...+..
T Consensus 283 i~~~~~~~~~-~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~ 361 (895)
T KOG2076|consen 283 IRRVAHYFIT-HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRR 361 (895)
T ss_pred HHHHHHHHHH-hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcc
Confidence 222333322 3344778888888887332 245556666654322111 0 11 000000
Q ss_pred ---------hhhh--hHHHHHHH----------HHHHHH-HHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 015472 152 ---------EGVL--DYSLIRET----------FQRASD-YLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERL 209 (406)
Q Consensus 152 ---------e~~~--~~~~~r~~----------f~~a~~-~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~a 209 (406)
...+ ++..++-+ ...++. ++............++...++.++..| .+..|..+|-.+
T Consensus 362 ~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~-~~~~Al~~l~~i 440 (895)
T KOG2076|consen 362 EEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIG-KYKEALRLLSPI 440 (895)
T ss_pred ccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcc-cHHHHHHHHHHH
Confidence 0000 00011110 011111 111110112234567778888888889 899999999999
Q ss_pred HHhccc-hHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHH
Q 015472 210 LKISGA-MLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDF 273 (406)
Q Consensus 210 l~~~~~-~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~ 273 (406)
+...+. +..+|...+.+++..|.++.|...|+++|.. -|. ..++--....+-...|+.+..
T Consensus 441 ~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~-~p~--~~D~Ri~Lasl~~~~g~~Eka 502 (895)
T KOG2076|consen 441 TNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL-APD--NLDARITLASLYQQLGNHEKA 502 (895)
T ss_pred hcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc-CCC--chhhhhhHHHHHHhcCCHHHH
Confidence 988664 4579999999999999999999999999973 343 233333334444456666643
No 67
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=98.57 E-value=8.3e-07 Score=73.79 Aligned_cols=109 Identities=17% Similarity=0.371 Sum_probs=86.2
Q ss_pred hhhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhc----CChhHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHH
Q 015472 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSS----GDPGRVQLLYERAITDFPVS---------SDLWLDYTQYLDK 69 (406)
Q Consensus 3 ~~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~----g~~~~~~~lyEral~~~P~~---------~~lW~~Y~~~l~~ 69 (406)
..|..||..|.... ...+.++.|..||.|...+ |.......+++||+..+..+ ..+|+.|+.+..
T Consensus 3 ~~r~~~e~~i~~~~-~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~- 80 (126)
T PF08311_consen 3 QQRQEFEEQIRSYE-EGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS- 80 (126)
T ss_dssp HHHHHHHHHHHCCG-GSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS-
T ss_pred HHHHHHHHHHHHcc-CCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc-
Confidence 47899999999986 1234699999999998764 45577889999999987654 579999998643
Q ss_pred hcchhhhHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 015472 70 TLKVGNVVRDVYSRATKNC--PWVGELWVRSLLSLERSRASEEEISTVFEKSL 120 (406)
Q Consensus 70 ~~~~~e~a~~vyerA~~~~--P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al 120 (406)
....+|.-...+. -....+|..|+.++|. .+++.+|..||..+|
T Consensus 81 ------~~~~if~~l~~~~IG~~~A~fY~~wA~~le~-~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 ------DPREIFKFLYSKGIGTKLALFYEEWAEFLEK-RGNFKKADEIYQLGI 126 (126)
T ss_dssp ------HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHcCccHHHHHHHHHHHHHHHH-cCCHHHHHHHHHhhC
Confidence 4678888887643 4578999999998875 799999999999876
No 68
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.56 E-value=5.6e-05 Score=79.81 Aligned_cols=118 Identities=9% Similarity=0.058 Sum_probs=76.5
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHH
Q 015472 6 AHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRAT 85 (406)
Q Consensus 6 ~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~ 85 (406)
..|-..|+..|. -.+.++..+.+....++...+...+..++..+..++++|.-++.+..... ..-.+..-|++.+
T Consensus 517 e~Yk~Ilkehp~----YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~-~~~~a~k~f~~i~ 591 (1018)
T KOG2002|consen 517 EMYKSILKEHPG----YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKS-EWKPAKKKFETIL 591 (1018)
T ss_pred HHHHHHHHHCch----hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhh-hhcccccHHHHHH
Confidence 456666777662 46677777777777888899999999999999999999999997665432 2334556666665
Q ss_pred HhC---CC--C----HHHHHHHHHHHH----HccCCHHHHHHHHHHHHhCccccHH
Q 015472 86 KNC---PW--V----GELWVRSLLSLE----RSRASEEEISTVFEKSLLCAFSTFE 128 (406)
Q Consensus 86 ~~~---P~--~----~~lW~~y~~~lE----~~~~~~e~ar~if~~al~~~~~~~~ 128 (406)
... +. + +.+|+.-+..-- ...+..++|.++|.++|.+.|..++
T Consensus 592 ~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~y 647 (1018)
T KOG2002|consen 592 KKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMY 647 (1018)
T ss_pred hhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 432 21 1 345555432100 0112356778888888887664333
No 69
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.56 E-value=3.8e-06 Score=85.15 Aligned_cols=200 Identities=12% Similarity=-0.008 Sum_probs=147.4
Q ss_pred ChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHhcchhhhHHHHHHHHHHhCCCCHHHHHH
Q 015472 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQ-YLDKTLKVGNVVRDVYSRATKNCPWVGELWVR 97 (406)
Q Consensus 19 ~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~-~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~ 97 (406)
|+...+.|...+.+-.-+++.+.|...|+||+..+|...-...-.+- +.. ....|.|...|..|+...|..-..|..
T Consensus 417 ~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~--~ee~d~a~~~fr~Al~~~~rhYnAwYG 494 (638)
T KOG1126|consen 417 DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIA--TEEFDKAMKSFRKALGVDPRHYNAWYG 494 (638)
T ss_pred CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhh--hHHHHhHHHHHHhhhcCCchhhHHHHh
Confidence 34567789999998888899999999999999999975533332221 111 235688999999999999999999999
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCcccc--HHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhh
Q 015472 98 SLLSLERSRASEEEISTVFEKSLLCAFST--FEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQM 175 (406)
Q Consensus 98 y~~~lE~~~~~~e~ar~if~~al~~~~~~--~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~ 175 (406)
.+. .-..++.++.|.-.|++|+.+.|.. +-.++...+.++ +..+.+...|++|+..
T Consensus 495 lG~-vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~----------------k~~d~AL~~~~~A~~l----- 552 (638)
T KOG1126|consen 495 LGT-VYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQL----------------KRKDKALQLYEKAIHL----- 552 (638)
T ss_pred hhh-heeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHh----------------hhhhHHHHHHHHHHhc-----
Confidence 886 3345788999999999999998853 222333222211 2233556666666543
Q ss_pred cCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 015472 176 KNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (406)
Q Consensus 176 ~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~ 245 (406)
.+.+.----.-+.+...++ +.++|...+|..-...|+...++...+....+.|+.+.|..-|-=|+.
T Consensus 553 --d~kn~l~~~~~~~il~~~~-~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 553 --DPKNPLCKYHRASILFSLG-RYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred --CCCCchhHHHHHHHHHhhc-chHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 2222111113455666788 899999999999999999999999999999999999999998888886
No 70
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.55 E-value=3.4e-05 Score=71.04 Aligned_cols=189 Identities=15% Similarity=0.054 Sum_probs=131.8
Q ss_pred hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHH---
Q 015472 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS---DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGE--- 93 (406)
Q Consensus 20 ~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~---~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~--- 93 (406)
+...+.+...+......|+++.+...|++++..+|.++ ..|...+..+... +..+.|...|+++++..|.+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKS-GDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHCcCCCchHH
Confidence 34567788777777889999999999999999999876 5667777666554 4788999999999999997654
Q ss_pred HHHHHHHHHHHc-------cCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHH
Q 015472 94 LWVRSLLSLERS-------RASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQR 166 (406)
Q Consensus 94 lW~~y~~~lE~~-------~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~ 166 (406)
.|...+...... .++.+.|...|++++...|........+. ... .+....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~--~~~-------------------~~~~~~-- 165 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK--RMD-------------------YLRNRL-- 165 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH--HHH-------------------HHHHHH--
Confidence 344444322211 25577888888888886654322111110 000 000000
Q ss_pred HHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc---hHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 015472 167 ASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA---MLEAWQSYISMEIELDHINEARSIYKRC 243 (406)
Q Consensus 167 a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~---~~~lW~~y~~~E~~~g~~~~ar~l~~ra 243 (406)
.......+.+....| ++..|...|+.++..+|+ .++.|...+......|+++.|..+++..
T Consensus 166 ---------------~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 166 ---------------AGKELYVARFYLKRG-AYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred ---------------HHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 011124455567778 999999999999999775 3579999999999999999999988887
Q ss_pred HhcccC
Q 015472 244 YSKRFT 249 (406)
Q Consensus 244 l~~~~~ 249 (406)
.. .||
T Consensus 230 ~~-~~~ 234 (235)
T TIGR03302 230 GA-NYP 234 (235)
T ss_pred Hh-hCC
Confidence 65 444
No 71
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.55 E-value=6.3e-06 Score=70.30 Aligned_cols=111 Identities=12% Similarity=0.016 Sum_probs=94.1
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHH
Q 015472 7 HLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATK 86 (406)
Q Consensus 7 ~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~ 86 (406)
.|+.+|...| +. |...+......|+++.+...|.+++..+|.+...|...+..+...+ ..+.|...|++|+.
T Consensus 15 ~~~~al~~~p----~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g-~~~~A~~~y~~Al~ 86 (144)
T PRK15359 15 ILKQLLSVDP----ET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLK-EYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHcCH----HH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh-hHHHHHHHHHHHHh
Confidence 5667777665 22 4455666677899999999999999999999999999998877654 67889999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCcccc
Q 015472 87 NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFST 126 (406)
Q Consensus 87 ~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~ 126 (406)
..|.....|...+..+. ..|+.++|...|++++...|..
T Consensus 87 l~p~~~~a~~~lg~~l~-~~g~~~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 87 LDASHPEPVYQTGVCLK-MMGEPGLAREAFQTAIKMSYAD 125 (144)
T ss_pred cCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999998664 5899999999999999987754
No 72
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.52 E-value=3.4e-06 Score=75.97 Aligned_cols=115 Identities=13% Similarity=0.068 Sum_probs=94.1
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHhcch-hhhHHHHHHH
Q 015472 6 AHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYL-DKTLKV-GNVVRDVYSR 83 (406)
Q Consensus 6 ~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l-~~~~~~-~e~a~~vyer 83 (406)
..|+.+|...| .+.+.|...+......|+++.|...|++++...|.++++|..|+..+ ...+.. .+.+..++++
T Consensus 60 ~~l~~~L~~~P----~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~ 135 (198)
T PRK10370 60 QALQDKIRANP----QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDK 135 (198)
T ss_pred HHHHHHHHHCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 45666777766 46778999999999999999999999999999999999999999854 333321 4789999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccc
Q 015472 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (406)
Q Consensus 84 A~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~ 125 (406)
|++..|.....+..++..+ ...+++++|...|++++...++
T Consensus 136 al~~dP~~~~al~~LA~~~-~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 136 ALALDANEVTALMLLASDA-FMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHhCCCChhHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCC
Confidence 9999999888888888644 4589999999999999986554
No 73
>PLN02789 farnesyltranstransferase
Probab=98.48 E-value=4.4e-05 Score=73.82 Aligned_cols=192 Identities=10% Similarity=-0.013 Sum_probs=129.7
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcch-hhhHHHHHHH
Q 015472 6 AHLEEQISRQDLSDSEKFQQYMIYLKYEQSSG-DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKV-GNVVRDVYSR 83 (406)
Q Consensus 6 ~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g-~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~-~e~a~~vyer 83 (406)
..++.+|...| .++.+|..-.......| .++.+...+++++..+|.+..+|....-.+...+.. .+.+...+++
T Consensus 58 ~lt~~aI~lnP----~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~k 133 (320)
T PLN02789 58 DLTADVIRLNP----GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRK 133 (320)
T ss_pred HHHHHHHHHCc----hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHH
Confidence 34556666555 57889987777777777 578999999999999999999999887666554321 2567889999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccc--cHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHH
Q 015472 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIR 161 (406)
Q Consensus 84 A~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~--~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r 161 (406)
|+...|.+...|....-.++ ..+.++++...+.++|...+. .+|.+..+.+.. +... +.+ .
T Consensus 134 al~~dpkNy~AW~~R~w~l~-~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~-------~~~l------~~~---~ 196 (320)
T PLN02789 134 ILSLDAKNYHAWSHRQWVLR-TLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITR-------SPLL------GGL---E 196 (320)
T ss_pred HHHhCcccHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHh-------cccc------ccc---c
Confidence 99999999999999886554 467899999999999997664 344333222111 1000 000 0
Q ss_pred HHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHhccchHH
Q 015472 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGK---DMVSARGVWERLLKISGAMLE 218 (406)
Q Consensus 162 ~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~---d~~~Ar~ife~al~~~~~~~~ 218 (406)
..++..+++....+...|.+...|.+..-+....+. ....|...+..++...+.+.-
T Consensus 197 ~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~ 256 (320)
T PLN02789 197 AMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVF 256 (320)
T ss_pred ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHH
Confidence 122333444434444456667789888777766221 345588888888887776554
No 74
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.46 E-value=3.8e-05 Score=82.50 Aligned_cols=255 Identities=10% Similarity=-0.006 Sum_probs=159.0
Q ss_pred hHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHH
Q 015472 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRA 84 (406)
Q Consensus 5 R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA 84 (406)
+..+...++..-.. +...|...++...+.|+++.|..+|++.. +.+...|...+.-+...+ ..++|..+|++.
T Consensus 244 ~~l~~~~~~~g~~~---d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g-~~~eA~~lf~~M 316 (697)
T PLN03081 244 QQLHCCVLKTGVVG---DTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHG-YSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHhCCCc---cceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 44455555444211 34467777888888899999998988763 346778888887666544 577888899888
Q ss_pred HHh-CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccc----cHHHHHHHHHHH--HHHH---HHHHhcccc--ch
Q 015472 85 TKN-CPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS----TFEEYLDLFLTR--IDGL---RRRILFSGE--VE 152 (406)
Q Consensus 85 ~~~-~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~----~~~~~~~l~~~~--~~~l---~Rr~~~~~~--~e 152 (406)
... +..+...+...+..+- ..+.++.+..++..+++.+.. ....++..+... ++.. ...+..+.. ..
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~-~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n 395 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFS-RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWN 395 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHH-hccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHH
Confidence 663 2234455666565443 467788888888888876532 223333333210 1111 111111110 00
Q ss_pred -------hhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc--hHHHHHHH
Q 015472 153 -------GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA--MLEAWQSY 223 (406)
Q Consensus 153 -------~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~--~~~lW~~y 223 (406)
..++.+.+..+|++.... + ..++...+...+......| .+++|..+|+......+- +...|...
T Consensus 396 ~lI~~y~~~G~~~~A~~lf~~M~~~-----g-~~Pd~~T~~~ll~a~~~~g-~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 396 ALIAGYGNHGRGTKAVEMFERMIAE-----G-VAPNHVTFLAVLSACRYSG-LSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-----C-CCCCHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 113334455555554331 1 1222334555555566677 899999999999876443 34578888
Q ss_pred HHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHh
Q 015472 224 ISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (406)
Q Consensus 224 ~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~a~~k 279 (406)
++...+.|.++.|..++++.- + .....+|...+.-...+|+.+....+.++
T Consensus 469 i~~l~r~G~~~eA~~~~~~~~---~--~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~ 519 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRAP---F--KPTVNMWAALLTACRIHKNLELGRLAAEK 519 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHCC---C--CCCHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 999999999999999987642 2 22357899999999999998877665554
No 75
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.44 E-value=8.4e-06 Score=73.42 Aligned_cols=115 Identities=14% Similarity=0.122 Sum_probs=65.2
Q ss_pred hhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchh
Q 015472 74 GNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEG 153 (406)
Q Consensus 74 ~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~ 153 (406)
.+.+...+++++...|.+...|...+..+ ...++++.|...|.+|+...|....
T Consensus 55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~-~~~g~~~~A~~a~~~Al~l~P~~~~------------------------- 108 (198)
T PRK10370 55 PEAQLQALQDKIRANPQNSEQWALLGEYY-LWRNDYDNALLAYRQALQLRGENAE------------------------- 108 (198)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCCHH-------------------------
Confidence 34566666777777777777777766533 3466677777777777765443211
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHH-HHcCCC--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHc
Q 015472 154 VLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLE-QSMGKD--MVSARGVWERLLKISGAMLEAWQSYISMEIEL 230 (406)
Q Consensus 154 ~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e-~~~~~d--~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~ 230 (406)
++..++... ...| + ...|+.++++++..+|+++..+...+......
T Consensus 109 ------------------------------~~~~lA~aL~~~~g-~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~ 157 (198)
T PRK10370 109 ------------------------------LYAALATVLYYQAG-QHMTPQTREMIDKALALDANEVTALMLLASDAFMQ 157 (198)
T ss_pred ------------------------------HHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHc
Confidence 222222221 1222 2 35566666666666666666666665555566
Q ss_pred ccHHHHHHHHHHHHh
Q 015472 231 DHINEARSIYKRCYS 245 (406)
Q Consensus 231 g~~~~ar~l~~ral~ 245 (406)
|+++.|...|++++.
T Consensus 158 g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 158 ADYAQAIELWQKVLD 172 (198)
T ss_pred CCHHHHHHHHHHHHh
Confidence 666666666666665
No 76
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.43 E-value=2.2e-05 Score=82.72 Aligned_cols=238 Identities=11% Similarity=0.100 Sum_probs=148.4
Q ss_pred hhhHHHHHHHhcCC-CCChhh---HHHHHHH--HHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhh
Q 015472 3 NARAHLEEQISRQD-LSDSEK---FQQYMIY--LKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNV 76 (406)
Q Consensus 3 ~~R~~yE~~L~~~~-~~~~~~---~~~w~~Y--i~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~ 76 (406)
.++..|..++.... ..+++. ..+=+.| .......++...|...|...|..+|...+..+..+.+....+ +...
T Consensus 470 ~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~-~~~e 548 (1018)
T KOG2002|consen 470 KALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKN-NLYE 548 (1018)
T ss_pred HHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhcc-CcHH
Confidence 35667777777621 111111 1221222 444555678888999999999999999999998886665544 4456
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccc--cHHHHHHHHHHHHHHHHHHHhccccchhh
Q 015472 77 VRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGV 154 (406)
Q Consensus 77 a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~--~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~ 154 (406)
+...+..++.....++.+|.-++. +.......-.+..-|...++.+.. .....+.+...++..+. .+..
T Consensus 549 a~~~lk~~l~~d~~np~arsl~G~-~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~----~~~r---- 619 (1018)
T KOG2002|consen 549 ASLLLKDALNIDSSNPNARSLLGN-LHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH----NPSR---- 619 (1018)
T ss_pred HHHHHHHHHhcccCCcHHHHHHHH-HHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc----cccc----
Confidence 888999999888778889988884 333444555667777777764433 23333444432222211 1110
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHH
Q 015472 155 LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHIN 234 (406)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~ 234 (406)
+....+..+++|++.+.+.+.+.|.++-.-.-.+-++...| .+..|+.||-+....-.+.+++|++.+.....+|++-
T Consensus 620 -n~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg-~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~ 697 (1018)
T KOG2002|consen 620 -NPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKG-RFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYR 697 (1018)
T ss_pred -ChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhcc-CchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHH
Confidence 01233445555555444444434443222222333445566 8888999998888776677788999998888889999
Q ss_pred HHHHHHHHHHhcccCCCC
Q 015472 235 EARSIYKRCYSKRFTGTG 252 (406)
Q Consensus 235 ~ar~l~~ral~~~~~~~~ 252 (406)
.|..+|+.|+++.++...
T Consensus 698 ~AIqmYe~~lkkf~~~~~ 715 (1018)
T KOG2002|consen 698 LAIQMYENCLKKFYKKNR 715 (1018)
T ss_pred HHHHHHHHHHHHhcccCC
Confidence 999999999887554443
No 77
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.40 E-value=1.2e-05 Score=68.51 Aligned_cols=43 Identities=16% Similarity=-0.039 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 015472 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISM 226 (406)
Q Consensus 183 ~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~ 226 (406)
..|..++......| +++.|+..|++++...|+++..|......
T Consensus 93 ~a~~~lg~~l~~~g-~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 93 EPVYQTGVCLKMMG-EPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 34555555556677 78888888888888888888777555443
No 78
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.31 E-value=0.00017 Score=76.62 Aligned_cols=65 Identities=14% Similarity=0.111 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 181 ~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
+.......|.....+| .+++|..+|++++..+|+.+..|..|+...+..|+.+.|...|++|+..
T Consensus 153 ~~~~~~~~a~~l~~~g-~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 153 SAREILLEAKSWDEIG-QSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred CHHHHHHHHHHHHHhc-chHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3334445555556677 7788888888888877777788888888888888888888888888764
No 79
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.31 E-value=4.3e-05 Score=63.80 Aligned_cols=114 Identities=15% Similarity=0.107 Sum_probs=95.4
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHH
Q 015472 6 AHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRAT 85 (406)
Q Consensus 6 ~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~ 85 (406)
..|+.+|...| .+...-..++......|+++.+...|++++..+|.++.+|...+..+... +..+.+..+|++++
T Consensus 4 ~~~~~~l~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 4 ATLKDLLGLDS----EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQML-KEYEEAIDAYALAA 78 (135)
T ss_pred hhHHHHHcCCh----hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 35777787776 34555666677777889999999999999999999999999999877654 36788999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccc
Q 015472 86 KNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (406)
Q Consensus 86 ~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~ 125 (406)
...|....+|..++..+ ...++++.|...|++++...|.
T Consensus 79 ~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 79 ALDPDDPRPYFHAAECL-LALGEPESALKALDLAIEICGE 117 (135)
T ss_pred hcCCCChHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhccc
Confidence 99999999998888744 4689999999999999997764
No 80
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.29 E-value=0.00025 Score=74.47 Aligned_cols=199 Identities=14% Similarity=0.058 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015472 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSL 102 (406)
Q Consensus 23 ~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~l 102 (406)
+..-+.-+.+.-.+|+++.|..++...|..+|.++..|...+...+..| +.+.+...+-.|--+.|.+..+|..++...
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrG-d~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRG-DIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcc-cHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 4455555666667799999999999999999999999999998877665 567787777778778899999999999855
Q ss_pred HHccCCHHHHHHHHHHHHhCccccHHHH---HHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCc
Q 015472 103 ERSRASEEEISTVFEKSLLCAFSTFEEY---LDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTD 179 (406)
Q Consensus 103 E~~~~~~e~ar~if~~al~~~~~~~~~~---~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~ 179 (406)
+ ..+++..|+-+|.+|++..|..|..+ ..++. ..++...+...|.+...+.++. ...
T Consensus 218 ~-~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~-----------------~~G~~~~Am~~f~~l~~~~p~~--d~e 277 (895)
T KOG2076|consen 218 E-QLGNINQARYCYSRAIQANPSNWELIYERSSLYQ-----------------KTGDLKRAMETFLQLLQLDPPV--DIE 277 (895)
T ss_pred H-hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHH-----------------HhChHHHHHHHHHHHHhhCCch--hHH
Confidence 4 68999999999999999887654322 22221 1144456677888887765321 011
Q ss_pred hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 015472 180 GLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA--MLEAWQSYISMEIELDHINEARSIYKRC 243 (406)
Q Consensus 180 ~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~--~~~lW~~y~~~E~~~g~~~~ar~l~~ra 243 (406)
....+...+++....++ +-++|.++++.++..+.+ ..+-..-|+.+.+....++.+..+....
T Consensus 278 r~~d~i~~~~~~~~~~~-~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~ 342 (895)
T KOG2076|consen 278 RIEDLIRRVAHYFITHN-ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDD 342 (895)
T ss_pred HHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHH
Confidence 22344555677777788 679999999999996543 2234445666666666666665554433
No 81
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=98.28 E-value=8.1e-07 Score=82.50 Aligned_cols=81 Identities=14% Similarity=0.304 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015472 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (406)
Q Consensus 22 ~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~ 101 (406)
.+..|..|+.+-.+.|.+..+..+|-.|+..+|+++++|+--+.|......+.+.++.+|.++++.+|.++.+|..|..
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr- 184 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR- 184 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH-
Confidence 5779999999999999999999999999999999999999988887665567889999999999999999999999997
Q ss_pred HH
Q 015472 102 LE 103 (406)
Q Consensus 102 lE 103 (406)
+|
T Consensus 185 ~E 186 (435)
T COG5191 185 ME 186 (435)
T ss_pred HH
Confidence 55
No 82
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=0.00047 Score=62.90 Aligned_cols=224 Identities=14% Similarity=0.087 Sum_probs=152.3
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHh--cchhhhHHHHHHHHHHhCCCCHHHHH
Q 015472 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS---SDLWLDYTQYLDKT--LKVGNVVRDVYSRATKNCPWVGELWV 96 (406)
Q Consensus 22 ~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~---~~lW~~Y~~~l~~~--~~~~e~a~~vyerA~~~~P~~~~lW~ 96 (406)
.+..|.++ ..-+++.+..+++..+...+.. .+.|.-|=....-. .+..+.|..++.+.-..+|.|..+=.
T Consensus 16 ~~~~wr~~-----~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~ 90 (289)
T KOG3060|consen 16 QMRKWREE-----TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGK 90 (289)
T ss_pred HHHHHHhc-----cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHH
Confidence 34577654 3457788888888888776544 78888775543221 23456788899988888899998888
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhc
Q 015472 97 RSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMK 176 (406)
Q Consensus 97 ~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~ 176 (406)
.++..+| ..++.++|.++|++.|.-.|...-.+. ..+.-+ ++.+ +. ..+.+...+++...
T Consensus 91 lkam~lE-a~~~~~~A~e~y~~lL~ddpt~~v~~K----RKlAil--ka~G-K~----------l~aIk~ln~YL~~F-- 150 (289)
T KOG3060|consen 91 LKAMLLE-ATGNYKEAIEYYESLLEDDPTDTVIRK----RKLAIL--KAQG-KN----------LEAIKELNEYLDKF-- 150 (289)
T ss_pred HHHHHHH-HhhchhhHHHHHHHHhccCcchhHHHH----HHHHHH--HHcC-Cc----------HHHHHHHHHHHHHh--
Confidence 8888787 489999999999999997765333222 111111 1111 10 12223333444332
Q ss_pred CCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcc---cHHHHHHHHHHHHhcccCCCCh
Q 015472 177 NTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELD---HINEARSIYKRCYSKRFTGTGS 253 (406)
Q Consensus 177 ~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g---~~~~ar~l~~ral~~~~~~~~~ 253 (406)
....+.|...+.+....| ++.+|.=+||.++-..|.++-++..|++...-.| ++.-+|++|.+++.. .+
T Consensus 151 --~~D~EAW~eLaeiY~~~~-~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl-~~---- 222 (289)
T KOG3060|consen 151 --MNDQEAWHELAEIYLSEG-DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL-NP---- 222 (289)
T ss_pred --cCcHHHHHHHHHHHHhHh-HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-Ch----
Confidence 334679999999999999 9999999999999999999999999999877665 677899999999984 22
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHh
Q 015472 254 EDICHAWLRFEREYGTLEDFDHSVQK 279 (406)
Q Consensus 254 ~~i~~~~i~fE~~~G~~e~~~~a~~k 279 (406)
.-..+|......---+.++.++..+
T Consensus 223 -~~~ral~GI~lc~~~la~~sk~~~k 247 (289)
T KOG3060|consen 223 -KNLRALFGIYLCGSALAQISKAELK 247 (289)
T ss_pred -HhHHHHHHHHHHHHHHHHHhHHHHh
Confidence 2333444444444444444444433
No 83
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=0.00034 Score=70.16 Aligned_cols=246 Identities=9% Similarity=-0.004 Sum_probs=147.9
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015472 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (406)
Q Consensus 22 ~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~ 101 (406)
+.++-..-.+-.-..+.+..+..+++..+..+|.+.....-++.-+-..+ +.....-+=.+.+...|.+..-|...+.+
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~-~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELG-KSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhc-ccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 45566666666667789999999999999999999998888887555433 33444445556667789999999999986
Q ss_pred HHHccCCHHHHHHHHHHHHhCcc--ccHHHHH-HHHHH--HHH-----HHH-HHHhccccch-hhhhHHHH-HHHHHHHH
Q 015472 102 LERSRASEEEISTVFEKSLLCAF--STFEEYL-DLFLT--RID-----GLR-RRILFSGEVE-GVLDYSLI-RETFQRAS 168 (406)
Q Consensus 102 lE~~~~~~e~ar~if~~al~~~~--~~~~~~~-~l~~~--~~~-----~l~-Rr~~~~~~~e-~~~~~~~~-r~~f~~a~ 168 (406)
+- ..+.+.+||..|.+|....+ +..|..+ ..|-. .++ |-+ -|.+.+.... -++..+-. ...+..|-
T Consensus 322 Yl-~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YL-MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HH-HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence 64 46899999999999998654 3334332 22211 011 100 1222111100 01111111 11223333
Q ss_pred HHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc----c---hHHHHHHHHHHHHHcccHHHHHHHHH
Q 015472 169 DYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG----A---MLEAWQSYISMEIELDHINEARSIYK 241 (406)
Q Consensus 169 ~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~----~---~~~lW~~y~~~E~~~g~~~~ar~l~~ 241 (406)
.++..++..+|...-+....+-+-...+ .+..|...|+.++...+ . -..+|...+...++++.+..|...|+
T Consensus 401 ~Ff~~A~ai~P~Dplv~~Elgvvay~~~-~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 401 KFFKQALAIAPSDPLVLHELGVVAYTYE-EYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHHhcCCCcchhhhhhhheeehHh-hhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 3333333333333223333443334445 78899999999994422 1 12467888888999999999999999
Q ss_pred HHHhcccCCCChHHHHHHHHHHHHHhCCHHHH
Q 015472 242 RCYSKRFTGTGSEDICHAWLRFEREYGTLEDF 273 (406)
Q Consensus 242 ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~ 273 (406)
+||.. .|.+....--..|+.. ..|+++..
T Consensus 480 ~aL~l-~~k~~~~~asig~iy~--llgnld~A 508 (611)
T KOG1173|consen 480 KALLL-SPKDASTHASIGYIYH--LLGNLDKA 508 (611)
T ss_pred HHHHc-CCCchhHHHHHHHHHH--HhcChHHH
Confidence 99984 4544333223344433 45776653
No 84
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.25 E-value=0.0013 Score=67.03 Aligned_cols=237 Identities=16% Similarity=0.145 Sum_probs=151.9
Q ss_pred ChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHh---
Q 015472 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITD--------FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKN--- 87 (406)
Q Consensus 19 ~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~--------~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~--- 87 (406)
+|................|+++.|..+|++||.. +|.-...-..++.++.... .+.+|..+|++|+..
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~-k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLG-KYDEAVNLYEEALTIREE 273 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHH
Confidence 3455556666666666789999999999999988 5544455555777776544 578899999999863
Q ss_pred -----CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccc----cHHH----HHHHHHHHHHHHHHHHhccccchhh
Q 015472 88 -----CPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS----TFEE----YLDLFLTRIDGLRRRILFSGEVEGV 154 (406)
Q Consensus 88 -----~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~----~~~~----~~~l~~~~~~~l~Rr~~~~~~~e~~ 154 (406)
+|....+...++..+ -..|.+.+|+..+++|+.+... .... +..+....+ .-
T Consensus 274 ~~G~~h~~va~~l~nLa~ly-~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~--------------~~ 338 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLY-YKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQ--------------SM 338 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHH-hccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHH--------------Hh
Confidence 244556777766533 4589999999999999974211 1111 111111110 01
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcCCc-hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----cc-----hHHHHHHHH
Q 015472 155 LDYSLIRETFQRASDYLSEQMKNTD-GLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS----GA-----MLEAWQSYI 224 (406)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~~~~-~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~----~~-----~~~lW~~y~ 224 (406)
.+++.+...++++++.+...++... ....+...++.+....| .+..|+++|+.|+++. +. ...+|.--.
T Consensus 339 ~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~g-k~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~ 417 (508)
T KOG1840|consen 339 NEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMG-KYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAE 417 (508)
T ss_pred cchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHH
Confidence 2345666777777776655554332 34567778888899999 8999999999999884 21 223554444
Q ss_pred HHHHHcccHHHHHHHHHHHHhcc--cCCCChHHHHHHHHHHHHH---hCCHHHHH
Q 015472 225 SMEIELDHINEARSIYKRCYSKR--FTGTGSEDICHAWLRFERE---YGTLEDFD 274 (406)
Q Consensus 225 ~~E~~~g~~~~ar~l~~ral~~~--~~~~~~~~i~~~~i~fE~~---~G~~e~~~ 274 (406)
.+ .+.+.+..|-.+|.++.... |. ++...+--.|.++-.- .|+.+...
T Consensus 418 ~~-~~~k~~~~a~~l~~~~~~i~~~~g-~~~~~~~~~~~nL~~~Y~~~g~~e~a~ 470 (508)
T KOG1840|consen 418 AY-EELKKYEEAEQLFEEAKDIMKLCG-PDHPDVTYTYLNLAALYRAQGNYEAAE 470 (508)
T ss_pred HH-HHhcccchHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHHHHHHcccHHHHH
Confidence 44 45677888888888875531 22 2233455556665544 46655543
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.23 E-value=0.00019 Score=70.11 Aligned_cols=203 Identities=10% Similarity=-0.085 Sum_probs=130.8
Q ss_pred ChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHH
Q 015472 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS---DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELW 95 (406)
Q Consensus 19 ~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~---~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW 95 (406)
||+....|...+.+....|++..+...|.++....|.+. +.+.-.+..... .++.+.+..++++++...|.+...|
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~-~g~~~~A~~~~~~~l~~~P~~~~a~ 80 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWI-AGDLPKALALLEQLLDDYPRDLLAL 80 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCcHHHH
Confidence 345566666666666677888888999999988887653 344333333332 3467889999999999999988777
Q ss_pred HH---HHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHh
Q 015472 96 VR---SLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLS 172 (406)
Q Consensus 96 ~~---y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~ 172 (406)
.. +.. +....+....+..++.......+..+.....+. .+ .. ..+++..+...|++++..
T Consensus 81 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a--~~---~~---------~~G~~~~A~~~~~~al~~-- 143 (355)
T cd05804 81 KLHLGAFG-LGDFSGMRDHVARVLPLWAPENPDYWYLLGMLA--FG---LE---------EAGQYDRAEEAARRALEL-- 143 (355)
T ss_pred HHhHHHHH-hcccccCchhHHHHHhccCcCCCCcHHHHHHHH--HH---HH---------HcCCHHHHHHHHHHHHhh--
Confidence 62 221 111133444454444442222222222111111 10 00 013445666777777664
Q ss_pred hhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccch----HHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 015472 173 EQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM----LEAWQSYISMEIELDHINEARSIYKRCYS 245 (406)
Q Consensus 173 ~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~----~~lW~~y~~~E~~~g~~~~ar~l~~ral~ 245 (406)
.|....++..++.+....| +++.|...+++++...|.. ...|...+.+....|+++.|..+|++++.
T Consensus 144 -----~p~~~~~~~~la~i~~~~g-~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 144 -----NPDDAWAVHAVAHVLEMQG-RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred -----CCCCcHHHHHHHHHHHHcC-CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 3444557778888888899 9999999999999986532 24677888899999999999999999875
No 86
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.23 E-value=7.7e-05 Score=79.16 Aligned_cols=100 Identities=9% Similarity=-0.032 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015472 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSL 102 (406)
Q Consensus 23 ~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~l 102 (406)
.+.....+..+...|..+.+..++++++..+|.+...+..|+.-|.+.. ..++|...+++++...|.+...-..++..+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~-~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l 164 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQ-GIEAGRAEIELYFSGGSSSAREILLEAKSW 164 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc-cHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 3444445555555666666666666666666666666666666655433 355566666666666666665555555544
Q ss_pred HHccCCHHHHHHHHHHHHhCcc
Q 015472 103 ERSRASEEEISTVFEKSLLCAF 124 (406)
Q Consensus 103 E~~~~~~e~ar~if~~al~~~~ 124 (406)
. ..|.+++|..+|++++...|
T Consensus 165 ~-~~g~~~~A~~~y~~~~~~~p 185 (694)
T PRK15179 165 D-EIGQSEQADACFERLSRQHP 185 (694)
T ss_pred H-HhcchHHHHHHHHHHHhcCC
Confidence 3 35666666666666665433
No 87
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=98.22 E-value=1.2e-05 Score=66.22 Aligned_cols=107 Identities=18% Similarity=0.339 Sum_probs=81.2
Q ss_pred hhhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhc---C-ChhHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHH
Q 015472 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSS---G-DPGRVQLLYERAITDF---------PVSSDLWLDYTQYLDK 69 (406)
Q Consensus 3 ~~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~---g-~~~~~~~lyEral~~~---------P~~~~lW~~Y~~~l~~ 69 (406)
+.|..||..|.....+ .+.++.|..||.|-..+ | .-.....++|||+..+ |....+|+.|+.++.
T Consensus 3 ~~r~~~e~~i~~~~~~-dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~~- 80 (125)
T smart00777 3 QQRQAFEQELQDLYEG-DDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNCD- 80 (125)
T ss_pred HHHHHHHHHHHhcccC-CCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhcC-
Confidence 5689999999554323 24589999999997753 3 3456889999999875 344689999998752
Q ss_pred hcchhhhHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCHHHHHHHHHH
Q 015472 70 TLKVGNVVRDVYSRATKNC--PWVGELWVRSLLSLERSRASEEEISTVFEK 118 (406)
Q Consensus 70 ~~~~~e~a~~vyerA~~~~--P~~~~lW~~y~~~lE~~~~~~e~ar~if~~ 118 (406)
..+.+|.-..++- -....+|..|+.++|. .+++.+|..||+.
T Consensus 81 ------dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~-~g~~~~A~~iy~~ 124 (125)
T smart00777 81 ------EPRELFQFLYSKGIGTKLALFYEEWAQLLEA-AGRYKKADEVYQL 124 (125)
T ss_pred ------CHHHHHHHHHHCCcchhhHHHHHHHHHHHHH-cCCHHHHHHHHHc
Confidence 2466787776644 3456899999998885 8999999999975
No 88
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.21 E-value=0.0006 Score=66.69 Aligned_cols=246 Identities=14% Similarity=0.051 Sum_probs=129.0
Q ss_pred ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHH
Q 015472 38 DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFE 117 (406)
Q Consensus 38 ~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~ 117 (406)
++..+...-..||..+-.++..-.+-+....-+ ++.+.+...|..|+.+...+.+...+..+..+ ..++.++|.+.|-
T Consensus 471 ~~~~aqqyad~aln~dryn~~a~~nkgn~~f~n-gd~dka~~~ykeal~ndasc~ealfniglt~e-~~~~ldeald~f~ 548 (840)
T KOG2003|consen 471 DFADAQQYADIALNIDRYNAAALTNKGNIAFAN-GDLDKAAEFYKEALNNDASCTEALFNIGLTAE-ALGNLDEALDCFL 548 (840)
T ss_pred chhHHHHHHHHHhcccccCHHHhhcCCceeeec-CcHHHHHHHHHHHHcCchHHHHHHHHhcccHH-HhcCHHHHHHHHH
Confidence 556666666667766666666555555433322 35677777777777777666655555555454 3677777777776
Q ss_pred HHHhCccccHHHHHHHHHHH---------HHHHHHHH--hccccchhhhhHHHHHHHHHH------HHHHHhhhhcCCch
Q 015472 118 KSLLCAFSTFEEYLDLFLTR---------IDGLRRRI--LFSGEVEGVLDYSLIRETFQR------ASDYLSEQMKNTDG 180 (406)
Q Consensus 118 ~al~~~~~~~~~~~~l~~~~---------~~~l~Rr~--~~~~~~e~~~~~~~~r~~f~~------a~~~l~~~~~~~~~ 180 (406)
+.-....+....++.+-..+ ++.+ ..+ +.+... .=+..+-.+|++ |.++.-..+.-.|.
T Consensus 549 klh~il~nn~evl~qianiye~led~aqaie~~-~q~~slip~dp---~ilskl~dlydqegdksqafq~~ydsyryfp~ 624 (840)
T KOG2003|consen 549 KLHAILLNNAEVLVQIANIYELLEDPAQAIELL-MQANSLIPNDP---AILSKLADLYDQEGDKSQAFQCHYDSYRYFPC 624 (840)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH-HHhcccCCCCH---HHHHHHHHHhhcccchhhhhhhhhhcccccCc
Confidence 65443333222222111110 0000 000 001100 000111122211 11111000000122
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHH
Q 015472 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAW 260 (406)
Q Consensus 181 ~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~ 260 (406)
+++..--++.+..... =.++|...|+++.-..|+...--+--+...++.|++.+|..+|..... .||.+ .....-.
T Consensus 625 nie~iewl~ayyidtq-f~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfped--ldclkfl 700 (840)
T KOG2003|consen 625 NIETIEWLAAYYIDTQ-FSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPED--LDCLKFL 700 (840)
T ss_pred chHHHHHHHHHHHhhH-HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccc--hHHHHHH
Confidence 2332222222333333 367899999999999887554334445678888999999999999886 58753 3444455
Q ss_pred HHHHHHhCCHHHHHHHHHhhchhHHHHHHHHhhhh
Q 015472 261 LRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQE 295 (406)
Q Consensus 261 i~fE~~~G~~e~~~~a~~k~~~~~~~~~~~r~~~~ 295 (406)
+.+.-..|-.+.-+ ......+.++|+..|.|.+
T Consensus 701 vri~~dlgl~d~ke--y~~klek~eki~eir~qre 733 (840)
T KOG2003|consen 701 VRIAGDLGLKDAKE--YADKLEKAEKIKEIREQRE 733 (840)
T ss_pred HHHhccccchhHHH--HHHHHHHHHHHHHHHHHhh
Confidence 55666666544333 2334566677777776655
No 89
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=0.00076 Score=61.54 Aligned_cols=159 Identities=19% Similarity=0.143 Sum_probs=102.5
Q ss_pred CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHH
Q 015472 37 GDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVF 116 (406)
Q Consensus 37 g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if 116 (406)
|....|..++.+.-..+|.|..+=..++.+++..+ ..+.|..+|++-+.-.|....+...-+-.+..++.+.+.++.+-
T Consensus 66 ~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~-~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln 144 (289)
T KOG3060|consen 66 GRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATG-NYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELN 144 (289)
T ss_pred cchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhh-chhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 45556777777777778888888888888887654 56778888888888888877777766654544455554444332
Q ss_pred HHHHh-Cccc--cHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHH
Q 015472 117 EKSLL-CAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQ 193 (406)
Q Consensus 117 ~~al~-~~~~--~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~ 193 (406)
.-|. +..+ .|+....+| .....|.+|.=+++..+-..|.+..++..|+++..
T Consensus 145 -~YL~~F~~D~EAW~eLaeiY------------------------~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Y 199 (289)
T KOG3060|consen 145 -EYLDKFMNDQEAWHELAEIY------------------------LSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLY 199 (289)
T ss_pred -HHHHHhcCcHHHHHHHHHHH------------------------HhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 2222 2211 233333333 22356777655555544445666667778888777
Q ss_pred HcCC--CHHHHHHHHHHHHHhccchHHHHH
Q 015472 194 SMGK--DMVSARGVWERLLKISGAMLEAWQ 221 (406)
Q Consensus 194 ~~~~--d~~~Ar~ife~al~~~~~~~~lW~ 221 (406)
..|+ ++..||+.|+++++.+|.+.--|.
T Consensus 200 t~gg~eN~~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 200 TQGGAENLELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHhhHHHHHHHHHHHHHHHHhChHhHHHHH
Confidence 7664 567888888888888885554443
No 90
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.19 E-value=0.00031 Score=75.98 Aligned_cols=188 Identities=13% Similarity=0.080 Sum_probs=124.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCH
Q 015472 30 LKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASE 109 (406)
Q Consensus 30 i~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~ 109 (406)
+-..-+.|+++.|...|++++..+|.++....+++.++... +..+.|+.++++|+.-.|.....-...+..+ ...+++
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~-G~~~~A~~~~eka~~p~n~~~~~llalA~ly-~~~gdy 118 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWA-GRDQEVIDVYERYQSSMNISSRGLASAARAY-RNEKRW 118 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHc-CCcHHHHHHHHHhccCCCCCHHHHHHHHHHH-HHcCCH
Confidence 33455689999999999999999999953333777766544 4678899999999943343333333333323 357999
Q ss_pred HHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHH
Q 015472 110 EEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWA 189 (406)
Q Consensus 110 e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a 189 (406)
++|..+|++++...|.....+..+.+.+.+ . .....+...+.++... .+.. ......+
T Consensus 119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~~-----~---------~q~~eAl~~l~~l~~~-------dp~~-~~~l~la 176 (822)
T PRK14574 119 DQALALWQSSLKKDPTNPDLISGMIMTQAD-----A---------GRGGVVLKQATELAER-------DPTV-QNYMTLS 176 (822)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhh-----c---------CCHHHHHHHHHHhccc-------Ccch-HHHHHHH
Confidence 999999999999888765555443322210 0 1222333333333222 2221 1223334
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHH
Q 015472 190 HLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKR 242 (406)
Q Consensus 190 ~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~r 242 (406)
.+....+ +...|..+|++++...|++.++...|+......|-...|..+...
T Consensus 177 yL~~~~~-~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 177 YLNRATD-RNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred HHHHhcc-hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 4444455 555699999999999999999999999999999887777665553
No 91
>PLN03077 Protein ECB2; Provisional
Probab=98.16 E-value=0.00028 Score=77.63 Aligned_cols=256 Identities=10% Similarity=-0.024 Sum_probs=164.0
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHH
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyer 83 (406)
++..|+..+...... +...|...++...+.|+++.|..+|++... .+...|...+.-+...+ ..++|..+|++
T Consensus 408 a~~l~~~~~~~g~~~---~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g-~~~eA~~lf~~ 480 (857)
T PLN03077 408 GVKLHELAERKGLIS---YVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNN-RCFEALIFFRQ 480 (857)
T ss_pred HHHHHHHHHHhCCCc---chHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCC-CHHHHHHHHHH
Confidence 566778777775422 356788899999999999999999998754 35667888887665544 56789999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccc----cHHHHHHHHHH--HHHHHHHHHhc-cccch----
Q 015472 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS----TFEEYLDLFLT--RIDGLRRRILF-SGEVE---- 152 (406)
Q Consensus 84 A~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~----~~~~~~~l~~~--~~~~l~Rr~~~-~~~~e---- 152 (406)
.+..++.+...+...+..+- ..+..+.++.++..+++.+.. ....++.++.. .++...+.... ..+..
T Consensus 481 m~~~~~pd~~t~~~lL~a~~-~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~ 559 (857)
T PLN03077 481 MLLTLKPNSVTLIAALSACA-RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNI 559 (857)
T ss_pred HHhCCCCCHhHHHHHHHHHh-hhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHH
Confidence 98766555556666555443 367788888888888775432 12223333311 01111000000 00000
Q ss_pred ------hhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc--hHHHHHHHH
Q 015472 153 ------GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA--MLEAWQSYI 224 (406)
Q Consensus 153 ------~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~--~~~lW~~y~ 224 (406)
..++.+.+..+|++..+. +..|+. ..+...+......| .+++|..+|+......+- +...+...+
T Consensus 560 lI~~~~~~G~~~~A~~lf~~M~~~-----g~~Pd~-~T~~~ll~a~~~~g-~v~ea~~~f~~M~~~~gi~P~~~~y~~lv 632 (857)
T PLN03077 560 LLTGYVAHGKGSMAVELFNRMVES-----GVNPDE-VTFISLLCACSRSG-MVTQGLEYFHSMEEKYSITPNLKHYACVV 632 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc-----CCCCCc-ccHHHHHHHHhhcC-hHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 113344555666655432 111222 23333444455667 899999999999866433 356788899
Q ss_pred HHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHh
Q 015472 225 SMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (406)
Q Consensus 225 ~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~a~~k 279 (406)
++..+.|.+++|..+++..- +. ....+|.+.+.-.+.+|+.+-.+.+.++
T Consensus 633 ~~l~r~G~~~eA~~~~~~m~---~~--pd~~~~~aLl~ac~~~~~~e~~e~~a~~ 682 (857)
T PLN03077 633 DLLGRAGKLTEAYNFINKMP---IT--PDPAVWGALLNACRIHRHVELGELAAQH 682 (857)
T ss_pred HHHHhCCCHHHHHHHHHHCC---CC--CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 99999999999999998752 11 2367899999999999999876665444
No 92
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=0.0022 Score=62.39 Aligned_cols=206 Identities=14% Similarity=0.056 Sum_probs=108.2
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc-----------------------------
Q 015472 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLK----------------------------- 72 (406)
Q Consensus 22 ~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~----------------------------- 72 (406)
+.......++.+-..|+...+...|+.+...+|.....--.|+..+...++
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l 310 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLL 310 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhh
Confidence 555667777777777777777777777777777777666666666554432
Q ss_pred ----hhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhcc
Q 015472 73 ----VGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFS 148 (406)
Q Consensus 73 ----~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~ 148 (406)
...+|...-+++++..|.+....+.-+..| ...++.++|--.|..|....|.....|-.++-.|...-
T Consensus 311 ~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL-~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~------- 382 (564)
T KOG1174|consen 311 YDEKKFERALNFVEKCIDSEPRNHEALILKGRLL-IALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQK------- 382 (564)
T ss_pred hhhhhHHHHHHHHHHHhccCcccchHHHhccHHH-HhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhc-------
Confidence 223344444555555555554444444322 33455566666666666554443444433332221100
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 015472 149 GEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEI 228 (406)
Q Consensus 149 ~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~ 228 (406)
..+.+.--|...+ +.+.+....+.+.-.-.-++.-. --++|.+.++++++..|.....-..-+++..
T Consensus 383 ----------~~kEA~~~An~~~-~~~~~sA~~LtL~g~~V~~~dp~--~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~ 449 (564)
T KOG1174|consen 383 ----------RFKEANALANWTI-RLFQNSARSLTLFGTLVLFPDPR--MREKAKKFAEKSLKINPIYTPAVNLIAELCQ 449 (564)
T ss_pred ----------hHHHHHHHHHHHH-HHhhcchhhhhhhcceeeccCch--hHHHHHHHHHhhhccCCccHHHHHHHHHHHH
Confidence 0111110011100 00111111111111011111111 2467888888888888887777777777777
Q ss_pred HcccHHHHHHHHHHHHhcccC
Q 015472 229 ELDHINEARSIYKRCYSKRFT 249 (406)
Q Consensus 229 ~~g~~~~ar~l~~ral~~~~~ 249 (406)
.-|....+.++++++|. .++
T Consensus 450 ~Eg~~~D~i~LLe~~L~-~~~ 469 (564)
T KOG1174|consen 450 VEGPTKDIIKLLEKHLI-IFP 469 (564)
T ss_pred hhCccchHHHHHHHHHh-hcc
Confidence 77778888888888876 354
No 93
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.15 E-value=0.0038 Score=67.71 Aligned_cols=95 Identities=13% Similarity=0.005 Sum_probs=68.6
Q ss_pred chHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHH
Q 015472 179 DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICH 258 (406)
Q Consensus 179 ~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~ 258 (406)
|+........+......| ++..|...++..+...|.++.+++.+++.+...|.+.+|..+++.++.. .|.+....+-.
T Consensus 413 ~d~~~~~~l~a~~~~~~g-dl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~ 490 (822)
T PRK14574 413 DDWIEGQTLLVQSLVALN-DLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLILERAQ 490 (822)
T ss_pred ccHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHH
Confidence 333445555566667778 9999999999999999999999999999999999999999999888763 44433333333
Q ss_pred HHHHHHHHhCCHHHHHHHH
Q 015472 259 AWLRFEREYGTLEDFDHSV 277 (406)
Q Consensus 259 ~~i~fE~~~G~~e~~~~a~ 277 (406)
.+..+. -|+....+..+
T Consensus 491 ~~~al~--l~e~~~A~~~~ 507 (822)
T PRK14574 491 AETAMA--LQEWHQMELLT 507 (822)
T ss_pred HHHHHh--hhhHHHHHHHH
Confidence 333332 25555554434
No 94
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.13 E-value=0.0047 Score=58.40 Aligned_cols=239 Identities=15% Similarity=0.162 Sum_probs=144.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCC---HH--HHHHHHH
Q 015472 26 YMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV---GE--LWVRSLL 100 (406)
Q Consensus 26 w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~---~~--lW~~y~~ 100 (406)
|..=++|..+ ..+++|..+|-..+...|...++=+..+....+.+ ..++|+.+.+-.+. -|.. .. .-..++.
T Consensus 39 Yv~GlNfLLs-~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRG-EvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 39 YVKGLNFLLS-NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRG-EVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHhHHHHHhh-cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcc-hHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHH
Confidence 4444666654 47889999999999999999999999999887655 67899998876554 3432 11 2223333
Q ss_pred HHHHccCCHHHHHHHHHHHHhCc-c--ccHHHHHHHHHHH------HHHHHHHHh-cccc--ch------hhhhHHHHHH
Q 015472 101 SLERSRASEEEISTVFEKSLLCA-F--STFEEYLDLFLTR------IDGLRRRIL-FSGE--VE------GVLDYSLIRE 162 (406)
Q Consensus 101 ~lE~~~~~~e~ar~if~~al~~~-~--~~~~~~~~l~~~~------~~~l~Rr~~-~~~~--~e------~~~~~~~~r~ 162 (406)
.+- ..|=++.|+.+|......+ + +....++.+|..- ++..++-.. .+.. ++ +...-....+
T Consensus 116 Dym-~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 116 DYM-AAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS 194 (389)
T ss_pred HHH-HhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh
Confidence 221 2566899999999888743 2 2333445555321 222211111 1110 00 0001112344
Q ss_pred HHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchH-HHHHHHHHHHHHcccHHHHHHHHH
Q 015472 163 TFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAML-EAWQSYISMEIELDHINEARSIYK 241 (406)
Q Consensus 163 ~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~-~lW~~y~~~E~~~g~~~~ar~l~~ 241 (406)
.+++|...+.+++...+.+++.-+..++++...| ++..|.+.|++++..+|+.. ++--.........|........+.
T Consensus 195 ~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g-~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~ 273 (389)
T COG2956 195 DVDRARELLKKALQADKKCVRASIILGRVELAKG-DYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR 273 (389)
T ss_pred hHHHHHHHHHHHHhhCccceehhhhhhHHHHhcc-chHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 5555555555555556667777777888888888 78888888888888887754 355555555667788888888888
Q ss_pred HHHhcccCCCChHHHHHHHHHHHHHhCCHHH
Q 015472 242 RCYSKRFTGTGSEDICHAWLRFEREYGTLED 272 (406)
Q Consensus 242 ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~ 272 (406)
++.. .+++. ..+..-+--.|...|-.+.
T Consensus 274 ~~~~-~~~g~--~~~l~l~~lie~~~G~~~A 301 (389)
T COG2956 274 RAME-TNTGA--DAELMLADLIELQEGIDAA 301 (389)
T ss_pred HHHH-ccCCc--cHHHHHHHHHHHhhChHHH
Confidence 8877 34443 3333333334555565433
No 95
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.10 E-value=0.0016 Score=70.10 Aligned_cols=256 Identities=11% Similarity=0.014 Sum_probs=160.4
Q ss_pred hhhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhhHHHHH
Q 015472 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITD-FPVSSDLWLDYTQYLDKTLKVGNVVRDVY 81 (406)
Q Consensus 3 ~~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~-~P~~~~lW~~Y~~~l~~~~~~~e~a~~vy 81 (406)
.+...|++.+...... +...|...+......|....+..++..++.. ...+..++...+..+.+.+ ..+.|..+|
T Consensus 207 ~A~~lf~~M~~~g~~p---~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g-~~~~A~~vf 282 (697)
T PLN03081 207 EAFALFREMWEDGSDA---EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG-DIEDARCVF 282 (697)
T ss_pred HHHHHHHHHHHhCCCC---ChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC-CHHHHHHHH
Confidence 3567788887665322 2335666666667788999999999888776 3446777888887776644 678899999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCcc-ccHHHHHHHHHHHHH--------HHHHHH---hccc
Q 015472 82 SRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAF-STFEEYLDLFLTRID--------GLRRRI---LFSG 149 (406)
Q Consensus 82 erA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~-~~~~~~~~l~~~~~~--------~l~Rr~---~~~~ 149 (406)
++.. +.+...|...+..+- ..+..++|..+|.+....+. +....|..+....+. .+...+ ....
T Consensus 283 ~~m~---~~~~vt~n~li~~y~-~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~ 358 (697)
T PLN03081 283 DGMP---EKTTVAWNSMLAGYA-LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL 358 (697)
T ss_pred HhCC---CCChhHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCC
Confidence 8763 345678988887554 58999999999999987543 122222222211110 000111 1111
Q ss_pred cc-------h---hhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--ccchH
Q 015472 150 EV-------E---GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI--SGAML 217 (406)
Q Consensus 150 ~~-------e---~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~--~~~~~ 217 (406)
.. + ..++++.+..+|++.. .++...|...+.-+...| +.++|..+|++.+.. .|+ .
T Consensus 359 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----------~~d~~t~n~lI~~y~~~G-~~~~A~~lf~~M~~~g~~Pd-~ 426 (697)
T PLN03081 359 DIVANTALVDLYSKWGRMEDARNVFDRMP----------RKNLISWNALIAGYGNHG-RGTKAVEMFERMIAEGVAPN-H 426 (697)
T ss_pred CeeehHHHHHHHHHCCCHHHHHHHHHhCC----------CCCeeeHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCC-H
Confidence 00 0 1123334444444321 123346777777777888 899999999998876 344 4
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHh
Q 015472 218 EAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (406)
Q Consensus 218 ~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~a~~k 279 (406)
..+...+......|..+.|..+|+..... .........|...++.--+.|.++.....+++
T Consensus 427 ~T~~~ll~a~~~~g~~~~a~~~f~~m~~~-~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 427 VTFLAVLSACRYSGLSEQGWEIFQSMSEN-HRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487 (697)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHh-cCCCCCccchHhHHHHHHhcCCHHHHHHHHHH
Confidence 45677777777889999999999988753 12211234566677766677887776554443
No 96
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.02 E-value=0.00014 Score=74.74 Aligned_cols=81 Identities=12% Similarity=0.194 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHH
Q 015472 158 SLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEAR 237 (406)
Q Consensus 158 ~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar 237 (406)
+.+...|.+|+.. .|.+..-|.+++.....++ .-.+|+..+.+|++.+-.+..+|.+|.-.-...|+++.|.
T Consensus 536 q~av~aF~rcvtL-------~Pd~~eaWnNls~ayi~~~-~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 536 QAAVKAFHRCVTL-------EPDNAEAWNNLSTAYIRLK-KKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHHHHHHHHHhhc-------CCCchhhhhhhhHHHHHHh-hhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHH
Confidence 3445556555443 4566778888888888888 6778888888888887677788888888888888888888
Q ss_pred HHHHHHHhc
Q 015472 238 SIYKRCYSK 246 (406)
Q Consensus 238 ~l~~ral~~ 246 (406)
..|.|.+..
T Consensus 608 ~A~~rll~~ 616 (777)
T KOG1128|consen 608 KAYHRLLDL 616 (777)
T ss_pred HHHHHHHHh
Confidence 888887654
No 97
>PLN03077 Protein ECB2; Provisional
Probab=98.02 E-value=0.0023 Score=70.54 Aligned_cols=254 Identities=10% Similarity=-0.021 Sum_probs=160.2
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhhHHHHHH
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDF-PVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~-P~~~~lW~~Y~~~l~~~~~~~e~a~~vye 82 (406)
+...|+......-.. +...+...+...-+.|+++.+..+++.++... ..+..+|...+..+.+.+ ..+.|..+|+
T Consensus 373 A~~lf~~M~~~g~~P---d~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g-~~~~A~~vf~ 448 (857)
T PLN03077 373 ALETYALMEQDNVSP---DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK-CIDKALEVFH 448 (857)
T ss_pred HHHHHHHHHHhCCCC---CceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC-CHHHHHHHHH
Confidence 456677665554211 23356666666777899999999999999873 456778888888776644 6788999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHH--H----------HHHHHHhcccc
Q 015472 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRI--D----------GLRRRILFSGE 150 (406)
Q Consensus 83 rA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~--~----------~l~Rr~~~~~~ 150 (406)
+... .+...|...+..+- ..+..++|..+|.+++....+....|..+....+ + .+.+.-+....
T Consensus 449 ~m~~---~d~vs~~~mi~~~~-~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~ 524 (857)
T PLN03077 449 NIPE---KDVISWTSIIAGLR-LNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDG 524 (857)
T ss_pred hCCC---CCeeeHHHHHHHHH-HCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccc
Confidence 8643 23457888887554 5788999999999998643222222222221110 0 11111000000
Q ss_pred ------ch---hhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--ccchHHH
Q 015472 151 ------VE---GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI--SGAMLEA 219 (406)
Q Consensus 151 ------~e---~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~--~~~~~~l 219 (406)
++ +.++++.+...|... ..+...|...+......| +.+.|..+|++.... .|+...
T Consensus 525 ~~~naLi~~y~k~G~~~~A~~~f~~~-----------~~d~~s~n~lI~~~~~~G-~~~~A~~lf~~M~~~g~~Pd~~T- 591 (857)
T PLN03077 525 FLPNALLDLYVRCGRMNYAWNQFNSH-----------EKDVVSWNILLTGYVAHG-KGSMAVELFNRMVESGVNPDEVT- 591 (857)
T ss_pred eechHHHHHHHHcCCHHHHHHHHHhc-----------CCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCccc-
Confidence 00 112222333333322 233457888888788889 899999999998875 455433
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHh
Q 015472 220 WQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (406)
Q Consensus 220 W~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~a~~k 279 (406)
+...+....+.|.++.|..+|+..... .........+...+..--+-|.++.....+++
T Consensus 592 ~~~ll~a~~~~g~v~ea~~~f~~M~~~-~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 592 FISLLCACSRSGMVTQGLEYFHSMEEK-YSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHH-hCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 445555666789999999999998842 22222346777788877778888877665554
No 98
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.00 E-value=0.00037 Score=58.11 Aligned_cols=111 Identities=12% Similarity=0.001 Sum_probs=82.2
Q ss_pred HHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHH
Q 015472 114 TVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQ 193 (406)
Q Consensus 114 ~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~ 193 (406)
.+|++++...|.....++.+....+ ..+++..+...|+.++.. .|....+|...+.+..
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~--------------~~~~~~~A~~~~~~~~~~-------~p~~~~~~~~la~~~~ 62 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLY--------------QQGRYDEALKLFQLLAAY-------DPYNSRYWLGLAACCQ 62 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHH--------------HcccHHHHHHHHHHHHHh-------CCCcHHHHHHHHHHHH
Confidence 3567777777654443333222111 012344555666666553 3445678888999988
Q ss_pred HcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 194 SMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 194 ~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
..+ +++.|..+|++++...|+++.+|...+......|+++.|...|++++..
T Consensus 63 ~~~-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 63 MLK-EYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHH-HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888 8999999999999999999999999999999999999999999999974
No 99
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.97 E-value=0.00018 Score=54.02 Aligned_cols=97 Identities=18% Similarity=0.088 Sum_probs=80.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015472 26 YMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERS 105 (406)
Q Consensus 26 w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~ 105 (406)
|...+......|+++.+..+|++++...|.+..+|..++..+... +..+.+...|++++...|....+|..++..+ ..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKL-GKYEEALEDYEKALELDPDNAKAYYNLGLAY-YK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCcchhHHHHHHHHH-HH
Confidence 555566666789999999999999999999999999888877654 3678899999999999998888888888744 34
Q ss_pred cCCHHHHHHHHHHHHhCcc
Q 015472 106 RASEEEISTVFEKSLLCAF 124 (406)
Q Consensus 106 ~~~~e~ar~if~~al~~~~ 124 (406)
.++.+.+...|.+++...|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 7889999999999887543
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.96 E-value=0.0012 Score=60.63 Aligned_cols=174 Identities=13% Similarity=-0.035 Sum_probs=112.5
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHh-------cch
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD---LWLDYTQYLDKT-------LKV 73 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~---lW~~Y~~~l~~~-------~~~ 73 (406)
+...|+..+...|. ++.....|...+......|+++.|...|++++..+|.++. .|...+...... .+.
T Consensus 52 A~~~~~~~~~~~p~-~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~ 130 (235)
T TIGR03302 52 AIKYFEALESRYPF-SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTA 130 (235)
T ss_pred HHHHHHHHHHhCCC-chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHH
Confidence 55678888887763 2334467777788888899999999999999999998876 344444333221 134
Q ss_pred hhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchh
Q 015472 74 GNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEG 153 (406)
Q Consensus 74 ~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~ 153 (406)
.+.+...|++++...|.+...|..+.. +..... ...... .....++. .
T Consensus 131 ~~~A~~~~~~~~~~~p~~~~~~~a~~~-~~~~~~-------~~~~~~-------~~~a~~~~-----------------~ 178 (235)
T TIGR03302 131 AREAFEAFQELIRRYPNSEYAPDAKKR-MDYLRN-------RLAGKE-------LYVARFYL-----------------K 178 (235)
T ss_pred HHHHHHHHHHHHHHCCCChhHHHHHHH-HHHHHH-------HHHHHH-------HHHHHHHH-----------------H
Confidence 678999999999999998777655443 211000 000000 00000110 0
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Q 015472 154 VLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA 215 (406)
Q Consensus 154 ~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~ 215 (406)
.+++..+...|++++...+ +.+.....|...+.....+| +.+.|..+++.+...+|+
T Consensus 179 ~g~~~~A~~~~~~al~~~p----~~~~~~~a~~~l~~~~~~lg-~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 179 RGAYVAAINRFETVVENYP----DTPATEEALARLVEAYLKLG-LKDLAQDAAAVLGANYPD 235 (235)
T ss_pred cCChHHHHHHHHHHHHHCC----CCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCC
Confidence 1344456666777665432 12334568888899999999 999999999988877763
No 101
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.96 E-value=0.006 Score=66.07 Aligned_cols=233 Identities=9% Similarity=-0.000 Sum_probs=143.2
Q ss_pred ChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCC-------
Q 015472 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV------- 91 (406)
Q Consensus 19 ~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~------- 91 (406)
+|.+..+|...+......|+++.|..+.+.++..+|.+..+|...+....+.. ....+..+ +++...+..
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~-~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRR-PLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhc-chhhhhhh--hhhhhcccccchhHHH
Confidence 46788999999999989999999999999999999999999998887444333 23333333 555444432
Q ss_pred ------------HHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHH--HHHHHHHHHHHHHHHhccccchhhhhH
Q 015472 92 ------------GELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEY--LDLFLTRIDGLRRRILFSGEVEGVLDY 157 (406)
Q Consensus 92 ------------~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~--~~l~~~~~~~l~Rr~~~~~~~e~~~~~ 157 (406)
..+...++.++. ..+..+++..+|+++|...+..+... +..+..- . ++
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Yd-k~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae----------------~-dL 165 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYA-KLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE----------------E-DK 165 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----------------h-hH
Confidence 234444454443 46889999999999999877543322 2221110 1 34
Q ss_pred HHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHcccHHH
Q 015472 158 SLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS--GAMLEAWQSYISMEIELDHINE 235 (406)
Q Consensus 158 ~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~--~~~~~lW~~y~~~E~~~g~~~~ 235 (406)
+.+...+.+|+..+-. .........+|..+...... +++--..|.++.+... +....+|.-..+.....++++.
T Consensus 166 ~KA~~m~~KAV~~~i~-~kq~~~~~e~W~k~~~~~~~---d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~ 241 (906)
T PRK14720 166 EKAITYLKKAIYRFIK-KKQYVGIEEIWSKLVHYNSD---DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDE 241 (906)
T ss_pred HHHHHHHHHHHHHHHh-hhcchHHHHHHHHHHhcCcc---cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhH
Confidence 4666667676653210 11123345677777543221 3443344445555442 3445666666666677789999
Q ss_pred HHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHH
Q 015472 236 ARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQ 278 (406)
Q Consensus 236 ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~a~~ 278 (406)
+-.+++++|.. -+. ......+-=..|=..|++...++.++.
T Consensus 242 ~i~iLK~iL~~-~~~-n~~a~~~l~~~y~~kY~~~~~~ee~l~ 282 (906)
T PRK14720 242 VIYILKKILEH-DNK-NNKAREELIRFYKEKYKDHSLLEDYLK 282 (906)
T ss_pred HHHHHHHHHhc-CCc-chhhHHHHHHHHHHHccCcchHHHHHH
Confidence 99999999984 333 222222222223366777666666543
No 102
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.95 E-value=0.0068 Score=62.00 Aligned_cols=233 Identities=16% Similarity=0.097 Sum_probs=127.3
Q ss_pred hcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHH
Q 015472 35 SSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEIST 114 (406)
Q Consensus 35 ~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~ 114 (406)
..|+.+.|.....+++..++.|.-.|.-|+-+.. +.+.++++.+.|..|+..-|.+.+||...+. |..+.++++....
T Consensus 53 ~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R-~dK~Y~eaiKcy~nAl~~~~dN~qilrDlsl-LQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR-SDKKYDEAIKCYRNALKIEKDNLQILRDLSL-LQIQMRDYEGYLE 130 (700)
T ss_pred cccchHHHHHHHHHHhccCcccchhHHHHHHHHh-hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH-HHHHHHhhhhHHH
Confidence 4577777777777788777778888887775544 3456777888888888877777777777765 5555666666666
Q ss_pred HHHHHHhCccc---cHHHHH-HHHHH-H-------HHHHHHHHhccccchhhhhHHH------------HHHHHHHHHHH
Q 015472 115 VFEKSLLCAFS---TFEEYL-DLFLT-R-------IDGLRRRILFSGEVEGVLDYSL------------IRETFQRASDY 170 (406)
Q Consensus 115 if~~al~~~~~---~~~~~~-~l~~~-~-------~~~l~Rr~~~~~~~e~~~~~~~------------~r~~f~~a~~~ 170 (406)
.-.+.|+..|+ .|-.+. ..++. . ++... .... ...+ -.+++. =...++.+++.
T Consensus 131 tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~-~t~~-~~~s-~~~~e~se~~Ly~n~i~~E~g~~q~ale~ 207 (700)
T KOG1156|consen 131 TRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFE-KTQN-TSPS-KEDYEHSELLLYQNQILIEAGSLQKALEH 207 (700)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhc-cCCC-HHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 55555654443 121111 00000 0 00000 0000 0000 001100 01124445444
Q ss_pred HhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHH-HcccHHHHHHHHHHHHhcccC
Q 015472 171 LSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEI-ELDHINEARSIYKRCYSKRFT 249 (406)
Q Consensus 171 l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~-~~g~~~~ar~l~~ral~~~~~ 249 (406)
+...-...-+.+..-..-+.++..++ .++.|..+|...+..+|++...+..+....- -.+.......+|...-+. .|
T Consensus 208 L~~~e~~i~Dkla~~e~ka~l~~kl~-~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~ 285 (700)
T KOG1156|consen 208 LLDNEKQIVDKLAFEETKADLLMKLG-QLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YP 285 (700)
T ss_pred HHhhhhHHHHHHHHhhhHHHHHHHHh-hHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-Cc
Confidence 32110000112233344567788899 8999999999999999998766655554442 223444444667765542 22
Q ss_pred C--------------CChHHHHHHHHHHHHHhCCHHHHH
Q 015472 250 G--------------TGSEDICHAWLRFEREYGTLEDFD 274 (406)
Q Consensus 250 ~--------------~~~~~i~~~~i~fE~~~G~~e~~~ 274 (406)
. +.-..+...|+.-+...|-+.-+.
T Consensus 286 r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~ 324 (700)
T KOG1156|consen 286 RHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFK 324 (700)
T ss_pred ccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhh
Confidence 1 112356667777776666554443
No 103
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.94 E-value=0.00046 Score=71.16 Aligned_cols=114 Identities=15% Similarity=0.158 Sum_probs=92.2
Q ss_pred HHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHH
Q 015472 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYK 241 (406)
Q Consensus 162 ~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ 241 (406)
..|.++.+.++..+...+-.+..|..++-.-..++ ++..|...|.+++...|++.+.|.++....+..|.-.+|+.++.
T Consensus 499 ~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqle-k~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~ 577 (777)
T KOG1128|consen 499 KDFSEADKHLERSLEINPLQLGTWFGLGCAALQLE-KEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLK 577 (777)
T ss_pred hhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHh-hhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHH
Confidence 34455555554444445666778888887778888 89999999999999999999999999999999999999999999
Q ss_pred HHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHh
Q 015472 242 RCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (406)
Q Consensus 242 ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~a~~k 279 (406)
.|++. . ..+..||+-|+-.-.+.|..++.-.|..+
T Consensus 578 EAlKc--n-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 578 EALKC--N-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHhhc--C-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 99975 3 44678999999998899998775544433
No 104
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.93 E-value=0.025 Score=58.29 Aligned_cols=65 Identities=12% Similarity=0.169 Sum_probs=55.1
Q ss_pred hHHHHHHHH--HHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 015472 180 GLLRLYAYW--AHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (406)
Q Consensus 180 ~~~~l~~~~--a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~ 245 (406)
+..-+|..| |+....+| ++++|....++||...|+.+++++.-+.+..+.|++..|-..++.|-.
T Consensus 190 p~~~lw~~~~lAqhyd~~g-~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~ 256 (517)
T PF12569_consen 190 PSTLLWTLYFLAQHYDYLG-DYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARE 256 (517)
T ss_pred chHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 445577655 77777788 899999999999999999999999999999999999998888887765
No 105
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.91 E-value=0.0037 Score=61.06 Aligned_cols=205 Identities=12% Similarity=-0.068 Sum_probs=131.9
Q ss_pred CCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHH
Q 015472 53 FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV---GELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEE 129 (406)
Q Consensus 53 ~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~---~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~ 129 (406)
+|.++..|...+.+.... +..+.+...|.++....|.+ .+.+...+. .....++++++..++++++...|.....
T Consensus 2 dp~~~~a~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~-~~~~~g~~~~A~~~~~~~l~~~P~~~~a 79 (355)
T cd05804 2 DPDFALGHAAAALLLLLG-GERPAAAAKAAAAAQALAARATERERAHVEAL-SAWIAGDLPKALALLEQLLDDYPRDLLA 79 (355)
T ss_pred CCccHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHhccCCCHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHCCCcHHH
Confidence 577777777777666543 35666788999998877743 334443333 3345789999999999999976654322
Q ss_pred HHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 015472 130 YLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERL 209 (406)
Q Consensus 130 ~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~a 209 (406)
+.. ..... . .+ +.......+.+++.. .....+.........+.+....| +++.|...++++
T Consensus 80 ~~~-~~~~~--~---~~---------~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~~~G-~~~~A~~~~~~a 140 (355)
T cd05804 80 LKL-HLGAF--G---LG---------DFSGMRDHVARVLPL---WAPENPDYWYLLGMLAFGLEEAG-QYDRAEEAARRA 140 (355)
T ss_pred HHH-hHHHH--H---hc---------ccccCchhHHHHHhc---cCcCCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Confidence 110 00000 0 00 000011111222221 11123333445556677778888 899999999999
Q ss_pred HHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCCh--HHHHHHHHHHHHHhCCHHHHHHHHHh
Q 015472 210 LKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGS--EDICHAWLRFEREYGTLEDFDHSVQK 279 (406)
Q Consensus 210 l~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~--~~i~~~~i~fE~~~G~~e~~~~a~~k 279 (406)
+...|+++.++..++......|+++.|..+|++++.. .+.+.. ..+|-.+..+....|+.+.....+++
T Consensus 141 l~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~-~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 141 LELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDT-WDCSSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhc-cCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999973 332111 23455566677788998886655555
No 106
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.85 E-value=0.023 Score=53.90 Aligned_cols=215 Identities=14% Similarity=0.122 Sum_probs=129.3
Q ss_pred HHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHH-HHHHHHHHHHH
Q 015472 62 DYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEE-YLDLFLTRIDG 140 (406)
Q Consensus 62 ~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~-~~~l~~~~~~~ 140 (406)
.=++|+.+. .+++|.+.|-..++..|...++-..+...+ +..|.+++|..|-+..+..+.-+.+. .+.++.---+|
T Consensus 41 ~GlNfLLs~--Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLf-RsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 41 KGLNFLLSN--QPDKAVDLFLEMLQEDPETFEAHLTLGNLF-RSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred hHHHHHhhc--CcchHHHHHHHHHhcCchhhHHHHHHHHHH-HhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Confidence 334566653 578999999999999999889988888744 56899999999988877765433222 22222111111
Q ss_pred H-----------HHHHhcccc-ch----hhhhHHHHHHHHHHHHHHHhhhhcCC--chHHHHHHHHHHH---HHHcCCCH
Q 015472 141 L-----------RRRILFSGE-VE----GVLDYSLIRETFQRASDYLSEQMKNT--DGLLRLYAYWAHL---EQSMGKDM 199 (406)
Q Consensus 141 l-----------~Rr~~~~~~-~e----~~~~~~~~r~~f~~a~~~l~~~~~~~--~~~~~l~~~~a~~---e~~~~~d~ 199 (406)
+ ......... .+ ..+.+-...+-+++|++.-....+.. +-.+.|-..|..+ ..... ++
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~-~~ 196 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS-DV 196 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh-hH
Confidence 1 111111000 00 00111112233455665443333222 2234555555443 33344 89
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHh
Q 015472 200 VSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (406)
Q Consensus 200 ~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~a~~k 279 (406)
++|+..+.+|++.+|+.+..=+...+.+...|++..|...++++++.. | +.-..+......==...|.+++...-+.+
T Consensus 197 d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn-~-~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 197 DRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQN-P-EYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred HHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhC-h-HHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999999999888889999999999999999999999842 2 22222222222222345777765544455
Q ss_pred hch
Q 015472 280 VTP 282 (406)
Q Consensus 280 ~~~ 282 (406)
++.
T Consensus 275 ~~~ 277 (389)
T COG2956 275 AME 277 (389)
T ss_pred HHH
Confidence 443
No 107
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=97.85 E-value=2.6e-05 Score=47.95 Aligned_cols=32 Identities=44% Similarity=0.949 Sum_probs=23.9
Q ss_pred CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 015472 37 GDPGRVQLLYERAITDFPVSSDLWLDYTQYLD 68 (406)
Q Consensus 37 g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~ 68 (406)
|+++.++.+|++++..+|.++++|+.|+.|+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 45667777888888888888888888877753
No 108
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.83 E-value=0.0069 Score=61.96 Aligned_cols=221 Identities=16% Similarity=0.172 Sum_probs=135.8
Q ss_pred CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHH
Q 015472 37 GDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVF 116 (406)
Q Consensus 37 g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if 116 (406)
+.+.....+.+..|..+|.+++--..-+-.+..- +..++|.....+++++.+.|+--|.-|+. +.+....+++|...|
T Consensus 21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~l-g~~~ea~~~vr~glr~d~~S~vCwHv~gl-~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCL-GKKEEAYELVRLGLRNDLKSHVCWHVLGL-LQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHhHHHHHHHHHHhCCccchhHHhccchhhcc-cchHHHHHHHHHHhccCcccchhHHHHHH-HHhhhhhHHHHHHHH
Confidence 4556667777888889999998877777666543 46688999999999999999999999997 666788999999999
Q ss_pred HHHHhCccccHHHHHHH--HHHHHH----HHH-HHHh---ccccchhhhhHH---HHHHHHHHHHHHHhhhhcCC---ch
Q 015472 117 EKSLLCAFSTFEEYLDL--FLTRID----GLR-RRIL---FSGEVEGVLDYS---LIRETFQRASDYLSEQMKNT---DG 180 (406)
Q Consensus 117 ~~al~~~~~~~~~~~~l--~~~~~~----~l~-Rr~~---~~~~~e~~~~~~---~~r~~f~~a~~~l~~~~~~~---~~ 180 (406)
.+||...++....+..+ .+.... ++. |..+ .+..-..+..+. .+...+..|...++...++. ++
T Consensus 99 ~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s 178 (700)
T KOG1156|consen 99 RNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPS 178 (700)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 99999988754433222 211110 000 0000 010001111111 12333444444332222111 11
Q ss_pred H-----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCC
Q 015472 181 L-----LRLYAYWAHLEQSMGKDMVSARGVWERLLKISG---AMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTG 252 (406)
Q Consensus 181 ~-----~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~---~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~ 252 (406)
. ..+...-.......| .++ .+++.....-+ +...+=..-+++++..|.++.|..+|.+.+.+ +|
T Consensus 179 ~~~~e~se~~Ly~n~i~~E~g-~~q---~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r-nP--- 250 (700)
T KOG1156|consen 179 KEDYEHSELLLYQNQILIEAG-SLQ---KALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER-NP--- 250 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHcc-cHH---HHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh-Cc---
Confidence 1 112222223333445 433 33444444333 34456677788899999999999999999984 33
Q ss_pred hHHHHHHHHHHHHHhCC
Q 015472 253 SEDICHAWLRFEREYGT 269 (406)
Q Consensus 253 ~~~i~~~~i~fE~~~G~ 269 (406)
.-+.-|..++...|-
T Consensus 251 --dn~~Yy~~l~~~lgk 265 (700)
T KOG1156|consen 251 --DNLDYYEGLEKALGK 265 (700)
T ss_pred --hhHHHHHHHHHHHHH
Confidence 578888999999983
No 109
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.80 E-value=0.00012 Score=53.50 Aligned_cols=67 Identities=16% Similarity=0.079 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCC
Q 015472 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCP 89 (406)
Q Consensus 23 ~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P 89 (406)
...|...+......|+++.+...|+++|..+|.++.+|...+......++..+.+...|++|+...|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456666666666666666666666666666666666666665554432245556666666666555
No 110
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.77 E-value=0.00058 Score=67.24 Aligned_cols=95 Identities=18% Similarity=0.039 Sum_probs=82.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCH
Q 015472 30 LKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASE 109 (406)
Q Consensus 30 i~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~ 109 (406)
+.-....|+++.|..+|.+||..+|.++.+|..++..+... +..+.|...+++|+...|.....|..++..+ ...+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~-g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~-~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKL-GNFTEAVADANKAIELDPSLAKAYLRKGTAC-MKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH-HHhCCH
Confidence 33445678999999999999999999999999999877764 4788999999999999999999999988755 458999
Q ss_pred HHHHHHHHHHHhCcccc
Q 015472 110 EEISTVFEKSLLCAFST 126 (406)
Q Consensus 110 e~ar~if~~al~~~~~~ 126 (406)
++|...|++|+...|..
T Consensus 87 ~eA~~~~~~al~l~P~~ 103 (356)
T PLN03088 87 QTAKAALEKGASLAPGD 103 (356)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 99999999999987753
No 111
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.76 E-value=0.0042 Score=58.77 Aligned_cols=202 Identities=10% Similarity=0.062 Sum_probs=119.9
Q ss_pred chhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHH---HHHHHHHH---HH--HHHH
Q 015472 72 KVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEE---YLDLFLTR---ID--GLRR 143 (406)
Q Consensus 72 ~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~---~~~l~~~~---~~--~l~R 143 (406)
+-+.+|.+-++.++...|.... +.-+...+ ........|..+|...+..-|..+.. ...++..- -+ .+.+
T Consensus 237 gm~r~AekqlqssL~q~~~~dT-fllLskvY-~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk 314 (478)
T KOG1129|consen 237 GMPRRAEKQLQSSLTQFPHPDT-FLLLSKVY-QRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYK 314 (478)
T ss_pred cChhhhHHHHHHHhhcCCchhH-HHHHHHHH-HHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHH
Confidence 3567899999999998886432 22222223 23556778999999999854422211 11111110 01 1223
Q ss_pred HHhccc--cchh----------hhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 015472 144 RILFSG--EVEG----------VLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLK 211 (406)
Q Consensus 144 r~~~~~--~~e~----------~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~ 211 (406)
+++... .++. ....+.+...|.+.++.- -.+.+++.+.+.-....+ .++-+...|++|+.
T Consensus 315 ~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-------~~speLf~NigLCC~yaq-Q~D~~L~sf~RAls 386 (478)
T KOG1129|consen 315 LVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-------AQSPELFCNIGLCCLYAQ-QIDLVLPSFQRALS 386 (478)
T ss_pred HHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-------CCChHHHhhHHHHHHhhc-chhhhHHHHHHHHh
Confidence 333211 1110 022344555666655531 122345555544334444 68888999999998
Q ss_pred h--ccch-HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHH---HHHhhchhHH
Q 015472 212 I--SGAM-LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDH---SVQKVTPRLE 285 (406)
Q Consensus 212 ~--~~~~-~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~---a~~k~~~~~~ 285 (406)
. .|+. .++|.+........|++.-|..+|.-||.. ..+...-+.-..-++.+-|+++.... +-..++|.+-
T Consensus 387 tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~---d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 387 TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS---DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc---CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence 8 3544 579999988888899999999999999974 33344555555667888999876543 2344566554
Q ss_pred H
Q 015472 286 E 286 (406)
Q Consensus 286 ~ 286 (406)
+
T Consensus 464 E 464 (478)
T KOG1129|consen 464 E 464 (478)
T ss_pred c
Confidence 4
No 112
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=97.75 E-value=4.7e-05 Score=46.75 Aligned_cols=31 Identities=32% Similarity=0.527 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 015472 198 DMVSARGVWERLLKISGAMLEAWQSYISMEI 228 (406)
Q Consensus 198 d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~ 228 (406)
+++.||.+|++++..+|.++.+|+.|++|+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 6788999999999999988999999999875
No 113
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.74 E-value=0.00017 Score=52.20 Aligned_cols=58 Identities=24% Similarity=0.239 Sum_probs=52.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 188 WAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 188 ~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
.+......| +++.|+.+|++++..+|+++.+|..++.+....|+++.|..+|++++..
T Consensus 3 ~a~~~~~~g-~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQG-DYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455667788 9999999999999999999999999999999999999999999999974
No 114
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.71 E-value=0.00027 Score=51.70 Aligned_cols=63 Identities=14% Similarity=0.165 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhc
Q 015472 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELD-HINEARSIYKRCYSK 246 (406)
Q Consensus 183 ~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g-~~~~ar~l~~ral~~ 246 (406)
.+|...+......+ +++.|...|++++..+|+++.+|...+......| ++..|...|++|++.
T Consensus 4 ~~~~~~g~~~~~~~-~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 4 EAWYNLGQIYFQQG-DYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 47888899889999 9999999999999999999999999999999999 799999999999973
No 115
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.71 E-value=0.0011 Score=56.80 Aligned_cols=102 Identities=9% Similarity=-0.053 Sum_probs=87.9
Q ss_pred hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHH
Q 015472 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSL 99 (406)
Q Consensus 20 ~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~ 99 (406)
++.++.-=.|.-.....|+++.|..+|+-.+..+|.+.+.|..++..+... +....|...|.+|+...|.++......+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~-g~~~~AI~aY~~A~~L~~ddp~~~~~ag 110 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQ-KHWGEAIYAYGRAAQIKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 456776667777788899999999999999999999999999999887754 4788999999999999999888777777
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCc
Q 015472 100 LSLERSRASEEEISTVFEKSLLCA 123 (406)
Q Consensus 100 ~~lE~~~~~~e~ar~if~~al~~~ 123 (406)
..+ ...++.+.|+..|+.|+...
T Consensus 111 ~c~-L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 111 ECY-LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHH-HHcCCHHHHHHHHHHHHHHh
Confidence 644 45899999999999999853
No 116
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.69 E-value=0.00019 Score=51.86 Aligned_cols=61 Identities=18% Similarity=0.150 Sum_probs=49.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCC
Q 015472 30 LKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV 91 (406)
Q Consensus 30 i~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~ 91 (406)
+......|+++.+..+|++++..+|.++++|..++..+...+ ..+.+..+|++++...|.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g-~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQG-RYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCcCC
Confidence 344566788899999999999999999999999998877654 6788889999999888865
No 117
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.68 E-value=0.0017 Score=70.23 Aligned_cols=179 Identities=13% Similarity=0.065 Sum_probs=116.3
Q ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 015472 45 LYERAITD--FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLC 122 (406)
Q Consensus 45 lyEral~~--~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~ 122 (406)
.|-|+... .|.+.+.|...+..... .+..+.+..+++.++...|.+..+|...+. +..+.+....+-.+ .++..
T Consensus 17 ~~~r~~~~~~~p~n~~a~~~Li~~~~~-~~~~deai~i~~~~l~~~P~~i~~yy~~G~-l~~q~~~~~~~~lv--~~l~~ 92 (906)
T PRK14720 17 KWTRADANNYSLSKFKELDDLIDAYKS-ENLTDEAKDICEEHLKEHKKSISALYISGI-LSLSRRPLNDSNLL--NLIDS 92 (906)
T ss_pred hhhhcccccCCcchHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCcceehHHHHHH-HHHhhcchhhhhhh--hhhhh
Confidence 45555444 57888999998877644 346788999999999999988888777665 44445555555444 55543
Q ss_pred ccc-cHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHH
Q 015472 123 AFS-TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVS 201 (406)
Q Consensus 123 ~~~-~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~ 201 (406)
.+. .-+..+..+ +....++ +.+-.+...+|..+..+| ..++
T Consensus 93 ~~~~~~~~~ve~~-----------------------------~~~i~~~--------~~~k~Al~~LA~~Ydk~g-~~~k 134 (906)
T PRK14720 93 FSQNLKWAIVEHI-----------------------------CDKILLY--------GENKLALRTLAEAYAKLN-ENKK 134 (906)
T ss_pred cccccchhHHHHH-----------------------------HHHHHhh--------hhhhHHHHHHHHHHHHcC-ChHH
Confidence 221 111111111 0111111 111124445666667788 8999
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCCh---HHHHHHHHHHHHH
Q 015472 202 ARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGS---EDICHAWLRFERE 266 (406)
Q Consensus 202 Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~---~~i~~~~i~fE~~ 266 (406)
|..+|++++..+|+++.+-..|+-+.... ++++|+.++.+|+...+..... ..+|..++...-.
T Consensus 135 a~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~ 201 (906)
T PRK14720 135 LKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSD 201 (906)
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcc
Confidence 99999999999999999999999887777 9999999999999864433333 3456555554433
No 118
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=97.65 E-value=5.7e-05 Score=45.95 Aligned_cols=30 Identities=23% Similarity=0.577 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 015472 198 DMVSARGVWERLLKISGAMLEAWQSYISMEI 228 (406)
Q Consensus 198 d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~ 228 (406)
.+++||.||++.+..+|+ +..|+.|+.||.
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHHhhc
Confidence 577888888888888865 788888888874
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.63 E-value=0.0041 Score=57.05 Aligned_cols=177 Identities=13% Similarity=0.014 Sum_probs=99.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 015472 42 VQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLL 121 (406)
Q Consensus 42 ~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~ 121 (406)
+...+=+....+|.+.++ ..+..-+...+ +.+....+...+.-..|....+-..++... ...+++..|..+|.++..
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G-~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~-~~~g~~~~A~~~~rkA~~ 128 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRG-DADSSLAVLQKSAIAYPKDRELLAAQGKNQ-IRNGNFGEAVSVLRKAAR 128 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcc-cccchHHHHhhhhccCcccHHHHHHHHHHH-HHhcchHHHHHHHHHHhc
Confidence 444455555566777777 66665444333 233344444444444555555665566533 346777777777777777
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHH
Q 015472 122 CAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVS 201 (406)
Q Consensus 122 ~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~ 201 (406)
..|+.|..+-.+...+ +..++...+|..|.+++++... .| .+..+.+-...-.| |...
T Consensus 129 l~p~d~~~~~~lgaal--------------dq~Gr~~~Ar~ay~qAl~L~~~----~p---~~~nNlgms~~L~g-d~~~ 186 (257)
T COG5010 129 LAPTDWEAWNLLGAAL--------------DQLGRFDEARRAYRQALELAPN----EP---SIANNLGMSLLLRG-DLED 186 (257)
T ss_pred cCCCChhhhhHHHHHH--------------HHccChhHHHHHHHHHHHhccC----Cc---hhhhhHHHHHHHcC-CHHH
Confidence 6665554433322111 1114445677777777665311 11 13333443334445 7777
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 015472 202 ARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRC 243 (406)
Q Consensus 202 Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ra 243 (406)
|+.++..+....+.+..+=.+.+-....+|++..|+.+-..=
T Consensus 187 A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 187 AETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 777777777776666666666666666777777777765443
No 120
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.56 E-value=0.00025 Score=51.64 Aligned_cols=65 Identities=20% Similarity=0.073 Sum_probs=53.4
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHH
Q 015472 34 QSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSL 99 (406)
Q Consensus 34 ~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~ 99 (406)
...|+++.|..+|++++..+|.+.++|..++..+...+ ..+.|..++++++...|....+|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQG-QYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT--HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 35688899999999999999999999999998887654 678899999999999998766665544
No 121
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.52 E-value=0.00047 Score=50.17 Aligned_cols=63 Identities=16% Similarity=0.122 Sum_probs=52.4
Q ss_pred HcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHH
Q 015472 194 SMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAW 260 (406)
Q Consensus 194 ~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~ 260 (406)
..| +++.|..+|++++..+|++.+++..++.+....|+++.|+.++++++.. .|. ...++..+
T Consensus 3 ~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~-~~~--~~~~~~l~ 65 (68)
T PF14559_consen 3 KQG-DYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ-DPD--NPEYQQLL 65 (68)
T ss_dssp HTT-HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG-GTT--HHHHHHHH
T ss_pred hcc-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcC--HHHHHHHH
Confidence 456 8999999999999999999999999999999999999999999999974 342 34555443
No 122
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.51 E-value=0.002 Score=53.55 Aligned_cols=79 Identities=16% Similarity=0.306 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhh--hhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cc-chHHHHHHHHHHHHHcccHH
Q 015472 159 LIRETFQRASDYLSE--QMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-SG-AMLEAWQSYISMEIELDHIN 234 (406)
Q Consensus 159 ~~r~~f~~a~~~l~~--~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~-~~-~~~~lW~~y~~~E~~~g~~~ 234 (406)
.+..++++|+..+.. ...+.+..+.+|+.||++. + .++.+|..+... .| ..+.+|..|+.+....|++.
T Consensus 44 ~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~-----~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~ 116 (126)
T PF08311_consen 44 GLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS-----S--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFK 116 (126)
T ss_dssp HHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB-----S--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc-----c--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHH
Confidence 456677888776532 2344456688999998532 2 789999999887 44 46789999999999999999
Q ss_pred HHHHHHHHHH
Q 015472 235 EARSIYKRCY 244 (406)
Q Consensus 235 ~ar~l~~ral 244 (406)
.|..||++|+
T Consensus 117 ~A~~I~~~Gi 126 (126)
T PF08311_consen 117 KADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhC
Confidence 9999999986
No 123
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.50 E-value=0.1 Score=50.00 Aligned_cols=239 Identities=13% Similarity=0.053 Sum_probs=145.1
Q ss_pred hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHH
Q 015472 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSL 99 (406)
Q Consensus 20 ~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~ 99 (406)
+...+.......-....|.+..|..-|..||..+|++.-.....+.....-++ ..-+..-+.|.+..-|.....-++.+
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGk-sk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGK-SKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcC-CccchhhHHHHHhcCccHHHHHHHhc
Confidence 45566666666666777889999999999999999987766666543333343 34577888999999998777777766
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCccc---cHHHHHHHHHHHHH-HHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhh
Q 015472 100 LSLERSRASEEEISTVFEKSLLCAFS---TFEEYLDLFLTRID-GLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQM 175 (406)
Q Consensus 100 ~~lE~~~~~~e~ar~if~~al~~~~~---~~~~~~~l~~~~~~-~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~ 175 (406)
..+ ..+|..+.|..-|...|...|+ ..+.+-.+.+..-. .++..+.. .-..+|. +.++.++...+
T Consensus 114 ~vl-lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s---~~~~GD~-------~~ai~~i~~ll 182 (504)
T KOG0624|consen 114 VVL-LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKS---ASGSGDC-------QNAIEMITHLL 182 (504)
T ss_pred hhh-hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHH---HhcCCch-------hhHHHHHHHHH
Confidence 533 4589999999999999997663 11222121111000 11101100 0000222 22333333223
Q ss_pred cCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHH
Q 015472 176 KNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSED 255 (406)
Q Consensus 176 ~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~ 255 (406)
...+-...+.+.-+.-....| ++..|..-+..+-+.-.++.+.......++...|+...+......||.. . ++...
T Consensus 183 Ei~~Wda~l~~~Rakc~i~~~-e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--d-pdHK~ 258 (504)
T KOG0624|consen 183 EIQPWDASLRQARAKCYIAEG-EPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--D-PDHKL 258 (504)
T ss_pred hcCcchhHHHHHHHHHHHhcC-cHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--C-cchhh
Confidence 223334455665566666667 7888877777777777777888878888888888888888888888853 2 22333
Q ss_pred HHHHHHHHHHHhCCHHHHH
Q 015472 256 ICHAWLRFEREYGTLEDFD 274 (406)
Q Consensus 256 i~~~~i~fE~~~G~~e~~~ 274 (406)
.+-.|-.+-.-...+++++
T Consensus 259 Cf~~YKklkKv~K~les~e 277 (504)
T KOG0624|consen 259 CFPFYKKLKKVVKSLESAE 277 (504)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444433333444433
No 124
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.49 E-value=0.061 Score=56.27 Aligned_cols=235 Identities=14% Similarity=0.029 Sum_probs=137.0
Q ss_pred hHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcchhhhHHHHHHH
Q 015472 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFP-VSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (406)
Q Consensus 5 R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P-~~~~lW~~Y~~~l~~~~~~~e~a~~vyer 83 (406)
-..+|.++...+ .||. .-.+..+-.-+ .++++.|.....++|..++ .+...|.-.+-.+..+ +....|..|.+-
T Consensus 464 lqale~av~~d~-~dp~-~if~lalq~A~--~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~-kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 464 LQALEEAVQFDP-TDPL-VIFYLALQYAE--QRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQ-KRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHhcCC-CCch-HHHHHHHHHHH--HHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhh-hhhHHHHHHHHH
Confidence 356888988887 4542 22333322222 4688999999999999955 6788999888766543 466778888888
Q ss_pred HHHhCCCCH---------------------------HHHHH-HH--------HHHHHc------cCCHHHHHHHHHHHH-
Q 015472 84 ATKNCPWVG---------------------------ELWVR-SL--------LSLERS------RASEEEISTVFEKSL- 120 (406)
Q Consensus 84 A~~~~P~~~---------------------------~lW~~-y~--------~~lE~~------~~~~e~ar~if~~al- 120 (406)
|+...|.+. .+|.. |. ..+... ..+...+-+.+.++.
T Consensus 539 al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 539 ALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred HHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 887777521 24651 00 000000 011111111111111
Q ss_pred -------hCc-------------cc-cHHHHHHHHHHHHHHHHHHHhccccc----------h--------hhhhHHHHH
Q 015472 121 -------LCA-------------FS-TFEEYLDLFLTRIDGLRRRILFSGEV----------E--------GVLDYSLIR 161 (406)
Q Consensus 121 -------~~~-------------~~-~~~~~~~l~~~~~~~l~Rr~~~~~~~----------e--------~~~~~~~~r 161 (406)
..+ +. .|.....+|+...+.-- +....+.. + ..+..-..+
T Consensus 619 l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~-~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~ 697 (799)
T KOG4162|consen 619 LVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFL-LSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVK 697 (799)
T ss_pred HHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHH-hcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHH
Confidence 011 11 24445566654332110 00000000 0 001222344
Q ss_pred HHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHH--HHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHH
Q 015472 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMV--SARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSI 239 (406)
Q Consensus 162 ~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~--~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l 239 (406)
..+.+|.+.+-.++...|.++......|.+....| +.. .+|.+...+++.+|.+++.|.......+..|+.+.|-.+
T Consensus 698 ~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G-~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaec 776 (799)
T KOG4162|consen 698 GQLEEAKEAFLVALALDPDHVPSMTALAELLLELG-SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAEC 776 (799)
T ss_pred HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHH
Confidence 45555555443444445667777888888888888 554 445599999999999999999999999999999999999
Q ss_pred HHHHHhc
Q 015472 240 YKRCYSK 246 (406)
Q Consensus 240 ~~ral~~ 246 (406)
|.-|++.
T Consensus 777 f~aa~qL 783 (799)
T KOG4162|consen 777 FQAALQL 783 (799)
T ss_pred HHHHHhh
Confidence 9999863
No 125
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.45 E-value=0.00041 Score=46.17 Aligned_cols=42 Identities=19% Similarity=0.360 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 015472 24 QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQ 65 (406)
Q Consensus 24 ~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~ 65 (406)
..|..+.......|+++.+..+|+++|..+|.++.+|..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 368888888888899999999999999999999999888763
No 126
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.44 E-value=0.0054 Score=49.30 Aligned_cols=99 Identities=10% Similarity=0.058 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCC---HHHHHHH
Q 015472 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVS---SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV---GELWVRS 98 (406)
Q Consensus 25 ~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~---~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~---~~lW~~y 98 (406)
.+..-+......|+++.+...|++++..+|.+ ...+..++..+...+ ..+.|...|++++...|.. ..+|...
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG-KYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45566666777899999999999999998876 567777777666544 6788999999999988874 5678777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCccc
Q 015472 99 LLSLERSRASEEEISTVFEKSLLCAFS 125 (406)
Q Consensus 99 ~~~lE~~~~~~e~ar~if~~al~~~~~ 125 (406)
+..+. ..++.+.+...|.+++...|+
T Consensus 83 ~~~~~-~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 83 GMSLQ-ELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHH-HhCChHHHHHHHHHHHHHCcC
Confidence 76554 578999999999999997665
No 127
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.44 E-value=0.0017 Score=64.04 Aligned_cols=87 Identities=17% Similarity=0.249 Sum_probs=73.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHH
Q 015472 155 LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHIN 234 (406)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~ 234 (406)
+++..+...|.+|+.. .+....+|...+.....+| +++.|...+++++...|+++..|...+......|+++
T Consensus 16 ~~~~~Ai~~~~~Al~~-------~P~~~~a~~~~a~~~~~~g-~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 16 DDFALAVDLYTQAIDL-------DPNNAELYADRAQANIKLG-NFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred CCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 3455666667776654 4556678888999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCC
Q 015472 235 EARSIYKRCYSKRFTG 250 (406)
Q Consensus 235 ~ar~l~~ral~~~~~~ 250 (406)
.|...|++|+.. .|.
T Consensus 88 eA~~~~~~al~l-~P~ 102 (356)
T PLN03088 88 TAKAALEKGASL-APG 102 (356)
T ss_pred HHHHHHHHHHHh-CCC
Confidence 999999999974 443
No 128
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.43 E-value=0.023 Score=58.16 Aligned_cols=164 Identities=15% Similarity=0.133 Sum_probs=110.7
Q ss_pred chhhhHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCcc---ccHHHHHHHHHHHHHH
Q 015472 72 KVGNVVRDVYSRATKN--------CPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAF---STFEEYLDLFLTRIDG 140 (406)
Q Consensus 72 ~~~e~a~~vyerA~~~--------~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~---~~~~~~~~l~~~~~~~ 140 (406)
+..+.|..+|++|++. +|.....-..++.++ ...+.+.+|..+|++||...- +.....+...+.....
T Consensus 213 g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y-~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ 291 (508)
T KOG1840|consen 213 GRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVY-RSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAV 291 (508)
T ss_pred ccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHH-HHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4678999999999987 554444444455533 467899999999999998421 1111111111111111
Q ss_pred HHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcC-CchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-----
Q 015472 141 LRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG----- 214 (406)
Q Consensus 141 l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~----- 214 (406)
+. ...+++..++..+++|++.....+.. .+.........+.+....+ .++.|..+|.+++++.-
T Consensus 292 ly---------~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~-~~Eea~~l~q~al~i~~~~~g~ 361 (508)
T KOG1840|consen 292 LY---------YKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMN-EYEEAKKLLQKALKIYLDAPGE 361 (508)
T ss_pred HH---------hccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHhhccc
Confidence 11 01156677888889998877653333 2333445556666777777 89999999999998731
Q ss_pred ---chHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 215 ---AMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 215 ---~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
.-+.+...++.+....|.++.|+.+|+.|+++
T Consensus 362 ~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 362 DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI 396 (508)
T ss_pred cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 23468888888899999999999999999986
No 129
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.41 E-value=0.017 Score=59.65 Aligned_cols=89 Identities=11% Similarity=0.010 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHH
Q 015472 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLR 262 (406)
Q Consensus 183 ~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~ 262 (406)
.++..++-.....| +++.|...|++|+..+|+ ...|..++.+....|+.+.|...|++|+.. ....+..+|..=+-
T Consensus 421 ~~~~ala~~~~~~g-~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~~~~~~~~ 496 (517)
T PRK10153 421 RIYEILAVQALVKG-KTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTLYWIENLV 496 (517)
T ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchHHHHHhcc
Confidence 45666666656667 999999999999999985 678888889999999999999999999963 33344444444344
Q ss_pred HHHHhCCHHHHHHHHH
Q 015472 263 FEREYGTLEDFDHSVQ 278 (406)
Q Consensus 263 fE~~~G~~e~~~~a~~ 278 (406)
| |-+++++..++-
T Consensus 497 f---~~~~~~~~~~~~ 509 (517)
T PRK10153 497 F---QTSVETVVPYLY 509 (517)
T ss_pred c---cccHHHHHHHHH
Confidence 5 556666655443
No 130
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.40 E-value=0.00044 Score=45.98 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHH
Q 015472 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYIS 225 (406)
Q Consensus 183 ~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~ 225 (406)
.+|..++..+..+| ++++|+.+|+++++.+|+++.+|..++.
T Consensus 2 ~~~~~la~~~~~~G-~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLG-QPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 36788999999999 9999999999999999999999998874
No 131
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.39 E-value=0.0018 Score=60.50 Aligned_cols=91 Identities=15% Similarity=0.015 Sum_probs=79.3
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHH
Q 015472 33 EQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEI 112 (406)
Q Consensus 33 E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~a 112 (406)
..+.+++..|+..|.+||..+|.++-+..+.+.-+.+. +..+.|.+-++.||...|.+...|......+ ..++.+++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~L-g~~~~AVkDce~Al~iDp~yskay~RLG~A~-~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKL-GEYEDAVKDCESALSIDPHYSKAYGRLGLAY-LALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHh-cchHHHHHHHHHHHhcChHHHHHHHHHHHHH-HccCcHHHH
Confidence 34456889999999999999999999999999877654 4678899999999999999999999988744 468899999
Q ss_pred HHHHHHHHhCccc
Q 015472 113 STVFEKSLLCAFS 125 (406)
Q Consensus 113 r~if~~al~~~~~ 125 (406)
...|.+||...|.
T Consensus 169 ~~aykKaLeldP~ 181 (304)
T KOG0553|consen 169 IEAYKKALELDPD 181 (304)
T ss_pred HHHHHhhhccCCC
Confidence 9999999999885
No 132
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.33 E-value=0.04 Score=50.70 Aligned_cols=63 Identities=10% Similarity=0.122 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 015472 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (406)
Q Consensus 182 ~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~ 245 (406)
.++|.-.+-.+.+.| +.+.||.-|.++++..|..+.+-.+.+-...-.|+.+.|+.++.++..
T Consensus 134 ~~~~~~lgaaldq~G-r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 134 WEAWNLLGAALDQLG-RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred hhhhhHHHHHHHHcc-ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444444445555 555555555555555555555554444444445555555555555543
No 133
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.091 Score=51.47 Aligned_cols=218 Identities=11% Similarity=-0.037 Sum_probs=127.7
Q ss_pred ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHH
Q 015472 38 DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFE 117 (406)
Q Consensus 38 ~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~ 117 (406)
.......++-.-...+|.++++-...++.+...| +...+...|+.+....|....-.-.|+..| ...++.+....+..
T Consensus 213 s~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~G-dn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL-~~eg~~e~~~~L~~ 290 (564)
T KOG1174|consen 213 SDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNG-DYFQAEDIFSSTLCANPDNVEAMDLYAVLL-GQEGGCEQDSALMD 290 (564)
T ss_pred chhhhHHHHHHhhccCCccHHHHHHHhhhhhhhc-CchHHHHHHHHHhhCChhhhhhHHHHHHHH-HhccCHhhHHHHHH
Confidence 3445667777778889999999999999877655 567799999999999998776667777644 45788888888888
Q ss_pred HHHhCccc---cHHHHH-HHHHHHHHHHHHHHhc---------cccchhh----------hhHHHHHHHHHHHHHHHhhh
Q 015472 118 KSLLCAFS---TFEEYL-DLFLTRIDGLRRRILF---------SGEVEGV----------LDYSLIRETFQRASDYLSEQ 174 (406)
Q Consensus 118 ~al~~~~~---~~~~~~-~l~~~~~~~l~Rr~~~---------~~~~e~~----------~~~~~~r~~f~~a~~~l~~~ 174 (406)
..+....- .|-... -+|. ..-.+|++. +..+..+ +....+--.|..|...
T Consensus 291 ~Lf~~~~~ta~~wfV~~~~l~~---~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L---- 363 (564)
T KOG1174|consen 291 YLFAKVKYTASHWFVHAQLLYD---EKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML---- 363 (564)
T ss_pred HHHhhhhcchhhhhhhhhhhhh---hhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc----
Confidence 87765421 111111 1110 000112211 1111111 1112223344444332
Q ss_pred hcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHcccHHHHHHHHHHHHhcccCCC
Q 015472 175 MKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYI---SMEIELDHINEARSIYKRCYSKRFTGT 251 (406)
Q Consensus 175 ~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~---~~E~~~g~~~~ar~l~~ral~~~~~~~ 251 (406)
.|..++.+.-+..-+...+ .+..|...-..+++..|.++....-+. -|+-. ---++|..+|+++|.. -|.-
T Consensus 364 ---ap~rL~~Y~GL~hsYLA~~-~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp-~~rEKAKkf~ek~L~~-~P~Y 437 (564)
T KOG1174|consen 364 ---APYRLEIYRGLFHSYLAQK-RFKEANALANWTIRLFQNSARSLTLFGTLVLFPDP-RMREKAKKFAEKSLKI-NPIY 437 (564)
T ss_pred ---chhhHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCc-hhHHHHHHHHHhhhcc-CCcc
Confidence 2334455555544445567 788888888888888888775444442 22322 2357899999999974 2332
Q ss_pred ChHHH-HHHHHHHHHHhCCH
Q 015472 252 GSEDI-CHAWLRFEREYGTL 270 (406)
Q Consensus 252 ~~~~i-~~~~i~fE~~~G~~ 270 (406)
.+..+ .......|-.+||.
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~ 457 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDI 457 (564)
T ss_pred HHHHHHHHHHHHhhCccchH
Confidence 22222 22233356666664
No 134
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.31 E-value=0.0014 Score=48.31 Aligned_cols=55 Identities=22% Similarity=0.191 Sum_probs=50.9
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 191 LEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 191 ~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
+....+ +++.|..++++++..+|+++.+|..++.+....|++..|...|++++..
T Consensus 4 ~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQE-DYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCC-CHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 345567 9999999999999999999999999999999999999999999999984
No 135
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.30 E-value=0.014 Score=51.14 Aligned_cols=94 Identities=11% Similarity=-0.005 Sum_probs=69.5
Q ss_pred HHHHHhcCCCC-ChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcchhhhHHHHHHH
Q 015472 8 LEEQISRQDLS-DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS---SDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (406)
Q Consensus 8 yE~~L~~~~~~-~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~---~~lW~~Y~~~l~~~~~~~e~a~~vyer 83 (406)
+|..+...+.. ++.....+...+......|+++.+...|++++...|.. ..+|..++..+... +..+.|...|++
T Consensus 19 ~~~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~ 97 (172)
T PRK02603 19 ADLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASN-GEHDKALEYYHQ 97 (172)
T ss_pred HHHHHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 44444444322 23344566777777788899999999999999876654 46788877766654 478899999999
Q ss_pred HHHhCCCCHHHHHHHHHHH
Q 015472 84 ATKNCPWVGELWVRSLLSL 102 (406)
Q Consensus 84 A~~~~P~~~~lW~~y~~~l 102 (406)
|+...|.....|..++..+
T Consensus 98 al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 98 ALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHhCcccHHHHHHHHHHH
Confidence 9999999888888777644
No 136
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.25 E-value=0.0069 Score=45.09 Aligned_cols=84 Identities=15% Similarity=0.139 Sum_probs=51.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHH
Q 015472 185 YAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFE 264 (406)
Q Consensus 185 ~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE 264 (406)
|...+......| +++.|..+|++++...|.+..+|..++......|+++.|..+|++++.. .+. ...++..+....
T Consensus 3 ~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~--~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLG-DYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL-DPD--NAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHh-cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCc--chhHHHHHHHHH
Confidence 334445555566 6777777777777777766677777777777777777777777777763 332 123444444444
Q ss_pred HHhCCHHH
Q 015472 265 REYGTLED 272 (406)
Q Consensus 265 ~~~G~~e~ 272 (406)
...|+.+.
T Consensus 79 ~~~~~~~~ 86 (100)
T cd00189 79 YKLGKYEE 86 (100)
T ss_pred HHHHhHHH
Confidence 44455433
No 137
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.24 E-value=0.29 Score=51.50 Aligned_cols=234 Identities=14% Similarity=0.033 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhC--CCCH-HHHHHHH
Q 015472 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC--PWVG-ELWVRSL 99 (406)
Q Consensus 23 ~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~--P~~~-~lW~~y~ 99 (406)
..+|.-+.-+....|.++.+...||+++...-...+.|..++--....+ ....|..+.+..+..- |... .+-..+-
T Consensus 323 ~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag-~~s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 323 AAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAG-SDSKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhc-cchHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 3466666666666788888889999998887778888988886655444 3456788888887666 4333 3333333
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCcc---c--cHHHHHHHHHHHHHHHHHHHhcccc-chhhhhHHHHHHHHHHHHHHHhh
Q 015472 100 LSLERSRASEEEISTVFEKSLLCAF---S--TFEEYLDLFLTRIDGLRRRILFSGE-VEGVLDYSLIRETFQRASDYLSE 173 (406)
Q Consensus 100 ~~lE~~~~~~e~ar~if~~al~~~~---~--~~~~~~~l~~~~~~~l~Rr~~~~~~-~e~~~~~~~~r~~f~~a~~~l~~ 173 (406)
.++| ..+..+++.+.-.+++...- + ....|+-+...+... +..... .+...--......+++|+++-
T Consensus 402 lc~e-~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~----A~~a~~~seR~~~h~kslqale~av~~d-- 474 (799)
T KOG4162|consen 402 LCIE-RLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQ----ARQANLKSERDALHKKSLQALEEAVQFD-- 474 (799)
T ss_pred HHHh-chhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhH----hhcCCChHHHHHHHHHHHHHHHHHHhcC--
Confidence 3344 46667777777777776211 1 122233333222110 000000 000000012344566666542
Q ss_pred hhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCC
Q 015472 174 QMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-SGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTG 252 (406)
Q Consensus 174 ~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~-~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~ 252 (406)
+++..+..+.+-.....+ ++..|...-.+++.. .++++..|.-++-....++++..|..+.+.++.. ++.
T Consensus 475 -----~~dp~~if~lalq~A~~R-~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~-- 545 (799)
T KOG4162|consen 475 -----PTDPLVIFYLALQYAEQR-QLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGD-- 545 (799)
T ss_pred -----CCCchHHHHHHHHHHHHH-hHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhh--
Confidence 222223333333344566 899999999999999 6788999999999999999999999999999984 543
Q ss_pred hHHHHHHHHHHHHHhCCHHHH
Q 015472 253 SEDICHAWLRFEREYGTLEDF 273 (406)
Q Consensus 253 ~~~i~~~~i~fE~~~G~~e~~ 273 (406)
.-.+...-+.+|..||+.+..
T Consensus 546 N~~l~~~~~~i~~~~~~~e~~ 566 (799)
T KOG4162|consen 546 NHVLMDGKIHIELTFNDREEA 566 (799)
T ss_pred hhhhchhhhhhhhhcccHHHH
Confidence 356788888999999998763
No 138
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=97.23 E-value=0.00037 Score=42.46 Aligned_cols=30 Identities=23% Similarity=0.615 Sum_probs=22.7
Q ss_pred ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 015472 38 DPGRVQLLYERAITDFPVSSDLWLDYTQYLD 68 (406)
Q Consensus 38 ~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~ 68 (406)
.+++|+.+|||.|...| ++..|+.|+.|.+
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHHHhhc
Confidence 35778888888888775 5788888888753
No 139
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.21 E-value=0.002 Score=47.54 Aligned_cols=60 Identities=20% Similarity=0.127 Sum_probs=48.5
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHH
Q 015472 34 QSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGEL 94 (406)
Q Consensus 34 ~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~l 94 (406)
...++++.+..++++++..+|.++.+|..++..+...+ ..+.+...|++++..+|.....
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLG-RYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhc-cHHHHHHHHHHHHHHCCCcHHH
Confidence 45678888888899999888988888888888777654 6778888889888888876543
No 140
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.014 Score=54.77 Aligned_cols=86 Identities=9% Similarity=-0.036 Sum_probs=67.4
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC--CHHHHHHHH
Q 015472 39 PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRA--SEEEISTVF 116 (406)
Q Consensus 39 ~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~--~~e~ar~if 116 (406)
++....-.+.-|..+|.|.+-|...+......+ +...|...|.+|++..|.+.++|..|+..+-...+ ...+++.+|
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~-~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALG-RASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-chhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 456778888889999999999999998777654 67789999999999999999999999886544332 345677888
Q ss_pred HHHHhCccc
Q 015472 117 EKSLLCAFS 125 (406)
Q Consensus 117 ~~al~~~~~ 125 (406)
.+++...+.
T Consensus 217 ~~al~~D~~ 225 (287)
T COG4235 217 RQALALDPA 225 (287)
T ss_pred HHHHhcCCc
Confidence 887776654
No 141
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.012 Score=55.24 Aligned_cols=113 Identities=12% Similarity=0.097 Sum_probs=91.1
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc--chhhhHHHHHHHH
Q 015472 7 HLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTL--KVGNVVRDVYSRA 84 (406)
Q Consensus 7 ~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~--~~~e~a~~vyerA 84 (406)
..|..|..+| .+..-|.-.+.....+|+...+...|.+|+...|.++++|..|+.-+--.. .....+..+|.+|
T Consensus 144 ~Le~~L~~nP----~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a 219 (287)
T COG4235 144 RLETHLQQNP----GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQA 219 (287)
T ss_pred HHHHHHHhCC----CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 3566777776 357789999999999999999999999999999999999999998765433 2456799999999
Q ss_pred HHhCCCCHH-HHHHHHHHHHHccCCHHHHHHHHHHHHhCccc
Q 015472 85 TKNCPWVGE-LWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (406)
Q Consensus 85 ~~~~P~~~~-lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~ 125 (406)
++..|.... +|.--...+ ..+++.+|...++..|...|+
T Consensus 220 l~~D~~~iral~lLA~~af--e~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 220 LALDPANIRALSLLAFAAF--EQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HhcCCccHHHHHHHHHHHH--HcccHHHHHHHHHHHHhcCCC
Confidence 999997653 443333334 479999999999999997654
No 142
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.13 E-value=0.26 Score=48.87 Aligned_cols=187 Identities=7% Similarity=0.025 Sum_probs=110.7
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHH
Q 015472 6 AHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRAT 85 (406)
Q Consensus 6 ~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~ 85 (406)
.-|.++|.... .+.+...+-.--....|+++.+...|-+.-...-++..+....+...+. ..++..+..+|..|.
T Consensus 511 ~~ykeal~nda----sc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~-led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 511 EFYKEALNNDA----SCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL-LEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHcCch----HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hhCHHHHHHHHHHhc
Confidence 34555555543 2444333333334456788888777777666666777777777765553 235667888888888
Q ss_pred HhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHH--HHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHH
Q 015472 86 KNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFE--EYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRET 163 (406)
Q Consensus 86 ~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~--~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~ 163 (406)
+.+|..+.+...++..+ -+.|+...|.+++-.....-|..++ +++.-| |+ -..-
T Consensus 586 slip~dp~ilskl~dly-dqegdksqafq~~ydsyryfp~nie~iewl~ay-----yi------------------dtqf 641 (840)
T KOG2003|consen 586 SLIPNDPAILSKLADLY-DQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAY-----YI------------------DTQF 641 (840)
T ss_pred ccCCCCHHHHHHHHHHh-hcccchhhhhhhhhhcccccCcchHHHHHHHHH-----HH------------------hhHH
Confidence 88888888888888744 4567777776666555543332211 111111 00 0122
Q ss_pred HHHHHHHHhhhhcCCchHHHHHHHHHH-HHHHcCCCHHHHHHHHHHHHHhccchHHHHHHH
Q 015472 164 FQRASDYLSEQMKNTDGLLRLYAYWAH-LEQSMGKDMVSARGVWERLLKISGAMLEAWQSY 223 (406)
Q Consensus 164 f~~a~~~l~~~~~~~~~~~~l~~~~a~-~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y 223 (406)
.++++.+++++... .+...-|+..+- ...+.| ++.+|..+|...-..+|.+.+.....
T Consensus 642 ~ekai~y~ekaali-qp~~~kwqlmiasc~rrsg-nyqka~d~yk~~hrkfpedldclkfl 700 (840)
T KOG2003|consen 642 SEKAINYFEKAALI-QPNQSKWQLMIASCFRRSG-NYQKAFDLYKDIHRKFPEDLDCLKFL 700 (840)
T ss_pred HHHHHHHHHHHHhc-CccHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhCccchHHHHHH
Confidence 34455555443221 223345665443 345566 99999999999999999877654333
No 143
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.09 E-value=0.082 Score=50.23 Aligned_cols=212 Identities=19% Similarity=0.212 Sum_probs=122.2
Q ss_pred ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCC------CCHHHHHHHHHHHHHccCCHHH
Q 015472 38 DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCP------WVGELWVRSLLSLERSRASEEE 111 (406)
Q Consensus 38 ~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P------~~~~lW~~y~~~lE~~~~~~e~ 111 (406)
+++.+..+|++|-..+ +..+..+.|...|.+|....- .....|..-+..+. ..+.++
T Consensus 30 ~~e~Aa~~y~~Aa~~f---------------k~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k--~~~~~~ 92 (282)
T PF14938_consen 30 DYEEAADLYEKAANCF---------------KLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK--KGDPDE 92 (282)
T ss_dssp HHHHHHHHHHHHHHHH---------------HHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH--HTTHHH
T ss_pred CHHHHHHHHHHHHHHH---------------HHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hhCHHH
Confidence 5567777777775442 123345666677777654321 11234444444343 237888
Q ss_pred HHHHHHHHHhCcc--ccHHHHHHHHHHHHHHHHHHHhccccchhh-hhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHH
Q 015472 112 ISTVFEKSLLCAF--STFEEYLDLFLTRIDGLRRRILFSGEVEGV-LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYW 188 (406)
Q Consensus 112 ar~if~~al~~~~--~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~-~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~ 188 (406)
|..+|++|+..-. +.......... .+.. + .+.. ++++.+...|++|.+++...- .......+....
T Consensus 93 Ai~~~~~A~~~y~~~G~~~~aA~~~~-~lA~----~-----ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~ 161 (282)
T PF14938_consen 93 AIECYEKAIEIYREAGRFSQAAKCLK-ELAE----I-----YEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKA 161 (282)
T ss_dssp HHHHHHHHHHHHHHCT-HHHHHHHHH-HHHH----H-----HCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHH-HHHH----H-----HHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHH
Confidence 8888888886311 11111111111 0000 0 0122 467789999999999875421 111234577789
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhccc----hH---HHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccCCCChHHHHHH
Q 015472 189 AHLEQSMGKDMVSARGVWERLLKISGA----ML---EAWQSYISMEIELDHINEARSIYKRCYSK--RFTGTGSEDICHA 259 (406)
Q Consensus 189 a~~e~~~~~d~~~Ar~ife~al~~~~~----~~---~lW~~y~~~E~~~g~~~~ar~l~~ral~~--~~~~~~~~~i~~~ 259 (406)
+.+...++ +++.|..+|++.....-+ .. ..++.-+-..+..|++..|+..|++.... .|..+.-..+...
T Consensus 162 A~l~~~l~-~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~ 240 (282)
T PF14938_consen 162 ADLYARLG-RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLED 240 (282)
T ss_dssp HHHHHHTT--HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHH
T ss_pred HHHHHHhC-CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHH
Confidence 99999999 999999999999986321 12 45565666666779999999999998863 2333322345555
Q ss_pred HHHHHHHhCCHHHHHHHHHh
Q 015472 260 WLRFEREYGTLEDFDHSVQK 279 (406)
Q Consensus 260 ~i~fE~~~G~~e~~~~a~~k 279 (406)
-+.=- +.||.+.+..||..
T Consensus 241 l~~A~-~~~D~e~f~~av~~ 259 (282)
T PF14938_consen 241 LLEAY-EEGDVEAFTEAVAE 259 (282)
T ss_dssp HHHHH-HTT-CCCHHHHCHH
T ss_pred HHHHH-HhCCHHHHHHHHHH
Confidence 55522 35888888877654
No 144
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.03 E-value=0.046 Score=58.69 Aligned_cols=73 Identities=11% Similarity=-0.016 Sum_probs=53.9
Q ss_pred hhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 015472 172 SEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (406)
Q Consensus 172 ~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~ 245 (406)
+.++...|..+..|...+..+...| .+..|.++|.+|....|.+.-.-..-+-++.-.|.+..+...+...+.
T Consensus 586 QsALR~dPkD~n~W~gLGeAY~~sG-ry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 586 QSALRTDPKDYNLWLGLGEAYPESG-RYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHhcCCchhHHHHHHHHHHHHhcC-ceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3334445677889999988888888 788999999999998887643333334566777888888887776655
No 145
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.02 E-value=0.11 Score=51.79 Aligned_cols=89 Identities=12% Similarity=-0.010 Sum_probs=63.9
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHH
Q 015472 34 QSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEIS 113 (406)
Q Consensus 34 ~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar 113 (406)
...|.++.++..+...+...|.|+-+|..-...+...+ ....|.+-+++|+...|.+.-+|+.|+..+- ..+...++.
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~n-k~~~A~e~~~kal~l~P~~~~l~~~~a~all-~~g~~~eai 394 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEAN-KAKEAIERLKKALALDPNSPLLQLNLAQALL-KGGKPQEAI 394 (484)
T ss_pred HHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCccHHHHHHHHHHH-hcCChHHHH
Confidence 33467777777887777788888888877777666544 4566888888888888888888888887553 466666777
Q ss_pred HHHHHHHhCcc
Q 015472 114 TVFEKSLLCAF 124 (406)
Q Consensus 114 ~if~~al~~~~ 124 (406)
.++.+.+...|
T Consensus 395 ~~L~~~~~~~p 405 (484)
T COG4783 395 RILNRYLFNDP 405 (484)
T ss_pred HHHHHHhhcCC
Confidence 77777666544
No 146
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.02 E-value=0.17 Score=48.55 Aligned_cols=252 Identities=13% Similarity=0.046 Sum_probs=136.5
Q ss_pred hhHHHHHHHhcCC---CCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHH
Q 015472 4 ARAHLEEQISRQD---LSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDV 80 (406)
Q Consensus 4 ~R~~yE~~L~~~~---~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~v 80 (406)
+|-.|-++|+..- -+||.++.....-+.-....|.-.-+..-+.|.|..-|.....-+..+..+.+.+ ..+.|..-
T Consensus 50 a~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G-ele~A~~D 128 (504)
T KOG0624|consen 50 ARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQG-ELEQAEAD 128 (504)
T ss_pred HhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcc-cHHHHHHH
Confidence 4556666666542 1355666644444444455677777788899999999998888888888888765 57889999
Q ss_pred HHHHHHhCCCCH---HHHHHHHHHHHH-----------ccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHh
Q 015472 81 YSRATKNCPWVG---ELWVRSLLSLER-----------SRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRIL 146 (406)
Q Consensus 81 yerA~~~~P~~~---~lW~~y~~~lE~-----------~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~ 146 (406)
|...+.+.|..+ +.....+..-|. ..|+...+.......|...|- . ..++..+....-
T Consensus 129 F~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W--d--a~l~~~Rakc~i---- 200 (504)
T KOG0624|consen 129 FDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW--D--ASLRQARAKCYI---- 200 (504)
T ss_pred HHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc--h--hHHHHHHHHHHH----
Confidence 999999999543 233332221110 123444444444444443321 1 111111111110
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 015472 147 FSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISM 226 (406)
Q Consensus 147 ~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~ 226 (406)
. .++...+-.-...+.. ...++-+..-..+.++...| |...+......||+.+|++-..+-.|-.+
T Consensus 201 ~------~~e~k~AI~Dlk~ask-------Ls~DnTe~~ykis~L~Y~vg-d~~~sL~~iRECLKldpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 201 A------EGEPKKAIHDLKQASK-------LSQDNTEGHYKISQLLYTVG-DAENSLKEIRECLKLDPDHKLCFPFYKKL 266 (504)
T ss_pred h------cCcHHHHHHHHHHHHh-------ccccchHHHHHHHHHHHhhh-hHHHHHHHHHHHHccCcchhhHHHHHHHH
Confidence 0 0111111111111111 11223345666778888889 89888899999999988764433333221
Q ss_pred ---H---------HHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhh
Q 015472 227 ---E---------IELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (406)
Q Consensus 227 ---E---------~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~a~~k~ 280 (406)
. ++.+++..|..-++..+.. -| ..+..-+..+-.++.+|..-+.+-.|++.|
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~-ep-~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC 330 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKN-EP-EETMIRYNGFRVLCTCYREDEQFGEAIQQC 330 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-CC-cccceeeeeeheeeecccccCCHHHHHHHH
Confidence 1 2235666777777777753 22 212222334444455555445555555555
No 147
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.00 E-value=0.008 Score=51.48 Aligned_cols=63 Identities=13% Similarity=-0.038 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 015472 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (406)
Q Consensus 182 ~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~ 245 (406)
...|..++-.....| ++..|...|.+|+...|+++......+......|+.+.|++.|+.|+.
T Consensus 69 ~~y~~gLG~~~Q~~g-~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 69 FDYWFRLGECCQAQK-HWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444444 444444444444444444444444444444444444444444444444
No 148
>PRK11906 transcriptional regulator; Provisional
Probab=96.93 E-value=0.086 Score=52.67 Aligned_cols=168 Identities=13% Similarity=-0.035 Sum_probs=102.3
Q ss_pred hCCCCH---HHH--HHHHHHHHH-c---cCCHHHHHHHHHHHH---hCccccHHHHHHHHHHHHHHHHHHHhccccchhh
Q 015472 87 NCPWVG---ELW--VRSLLSLER-S---RASEEEISTVFEKSL---LCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGV 154 (406)
Q Consensus 87 ~~P~~~---~lW--~~y~~~lE~-~---~~~~e~ar~if~~al---~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~ 154 (406)
.-|.+. ..| ..|++.... . ..+.+.|..+|.+|+ ...|.....|. ++.+|...+.-.+... ..
T Consensus 243 ~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~--~lA~~h~~~~~~g~~~---~~ 317 (458)
T PRK11906 243 LAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYC--LLAECHMSLALHGKSE---LE 317 (458)
T ss_pred CCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHH--HHHHHHHHHHHhcCCC---ch
Confidence 335555 678 666653322 1 234677888999999 55554333332 2233332221111111 11
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHH
Q 015472 155 LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHIN 234 (406)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~ 234 (406)
.+...++..-.+|++. .+.+....-..+......+ +.+.|...|++|+..+|+.+..|..++-...-.|+.+
T Consensus 318 ~~~~~a~~~A~rAvel-------d~~Da~a~~~~g~~~~~~~-~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~ 389 (458)
T PRK11906 318 LAAQKALELLDYVSDI-------TTVDGKILAIMGLITGLSG-QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIE 389 (458)
T ss_pred HHHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHhhc-chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH
Confidence 2333445555555553 2222112223444445567 6999999999999999999999999999899999999
Q ss_pred HHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhC
Q 015472 235 EARSIYKRCYSKRFTGTGSEDICHAWLRFEREYG 268 (406)
Q Consensus 235 ~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G 268 (406)
.|+..+++|+.. -|..-...|.+-|++.--.+|
T Consensus 390 ~a~~~i~~alrL-sP~~~~~~~~~~~~~~~~~~~ 422 (458)
T PRK11906 390 EARICIDKSLQL-EPRRRKAVVIKECVDMYVPNP 422 (458)
T ss_pred HHHHHHHHHhcc-CchhhHHHHHHHHHHHHcCCc
Confidence 999999999974 344444567788885433333
No 149
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.93 E-value=0.0057 Score=46.64 Aligned_cols=81 Identities=11% Similarity=0.082 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHH
Q 015472 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINE 235 (406)
Q Consensus 156 ~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ 235 (406)
++..+...|++++...+. ++...+|...|......| ++.+|..++++ +...+.++..+..++......|+++.
T Consensus 4 ~y~~Ai~~~~k~~~~~~~-----~~~~~~~~~la~~~~~~~-~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPT-----NPNSAYLYNLAQCYFQQG-KYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp -HHHHHHHHHHHHHHHCG-----THHHHHHHHHHHHHHHTT-HHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred cHHHHHHHHHHHHHHCCC-----ChhHHHHHHHHHHHHHCC-CHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHH
Confidence 344555666666554311 113456777888889999 89999999999 77778888877777999999999999
Q ss_pred HHHHHHHH
Q 015472 236 ARSIYKRC 243 (406)
Q Consensus 236 ar~l~~ra 243 (406)
|+.+|+++
T Consensus 77 Ai~~l~~~ 84 (84)
T PF12895_consen 77 AIKALEKA 84 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 99999875
No 150
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.90 E-value=0.027 Score=48.99 Aligned_cols=98 Identities=12% Similarity=0.036 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHH
Q 015472 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS---SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRS 98 (406)
Q Consensus 22 ~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~---~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y 98 (406)
....|...+......|+++.+...|++|+...|.+ +.+|...+..+... +..+.|...|++|+...|.....|...
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~-g~~~eA~~~~~~Al~~~~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN-GEHTKALEYYFQALERNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 45678888888888999999999999999887654 34788887766654 467899999999999999888777776
Q ss_pred HHHHHH------ccCCHHHHHHHHHHHH
Q 015472 99 LLSLER------SRASEEEISTVFEKSL 120 (406)
Q Consensus 99 ~~~lE~------~~~~~e~ar~if~~al 120 (406)
+..+.. ..++++.+...|.+++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 653321 3455555544444443
No 151
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.87 E-value=0.027 Score=56.02 Aligned_cols=112 Identities=15% Similarity=-0.008 Sum_probs=87.8
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHH
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyer 83 (406)
++..+-..|+..| .+.-.|..-.+.....+....|...|++++..+|.++-+|+.|+..+... +.+.++..++.+
T Consensus 325 A~~~l~~L~~~~P----~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~-g~~~eai~~L~~ 399 (484)
T COG4783 325 ALKLLQPLIAAQP----DNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKG-GKPQEAIRILNR 399 (484)
T ss_pred HHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhc-CChHHHHHHHHH
Confidence 3444445555555 34545666677778889999999999999999999999999999998864 467789999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 015472 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLL 121 (406)
Q Consensus 84 A~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~ 121 (406)
.+...|.....|..++...+. .|+..++...+-.++.
T Consensus 400 ~~~~~p~dp~~w~~LAqay~~-~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 400 YLFNDPEDPNGWDLLAQAYAE-LGNRAEALLARAEGYA 436 (484)
T ss_pred HhhcCCCCchHHHHHHHHHHH-hCchHHHHHHHHHHHH
Confidence 999999999999999997764 6776666555544443
No 152
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.85 E-value=0.73 Score=47.62 Aligned_cols=221 Identities=16% Similarity=0.162 Sum_probs=136.0
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc----chhhhHHHHHHHHHHhCCCCHHHHHH
Q 015472 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTL----KVGNVVRDVYSRATKNCPWVGELWVR 97 (406)
Q Consensus 22 ~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~----~~~e~a~~vyerA~~~~P~~~~lW~~ 97 (406)
.......-+.+..+.|..+.|..+|...|..||.+......|...+.... ...+....+|+.--..+|.+...-..
T Consensus 37 k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl 116 (517)
T PF12569_consen 37 KLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRL 116 (517)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHh
Confidence 34444555778888999999999999999999999998888887762221 23466788999888888876332111
Q ss_pred HHHHHHHccCCHH-HHHHHHHHHHhCccc-cHHHHHHHH-------------HHHHHHHHHHHhcc-cc---ch-----h
Q 015472 98 SLLSLERSRASEE-EISTVFEKSLLCAFS-TFEEYLDLF-------------LTRIDGLRRRILFS-GE---VE-----G 153 (406)
Q Consensus 98 y~~~lE~~~~~~e-~ar~if~~al~~~~~-~~~~~~~l~-------------~~~~~~l~Rr~~~~-~~---~e-----~ 153 (406)
-+.++ .+..+. .+.......|..+-+ .....-.++ ..++..+....... .. .+ -
T Consensus 117 ~L~~~--~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~l 194 (517)
T PF12569_consen 117 PLDFL--EGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLL 194 (517)
T ss_pred hcccC--CHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHH
Confidence 11111 122232 344444555554322 122222222 22221111000000 00 00 0
Q ss_pred hhhHHH-----HHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 015472 154 VLDYSL-----IRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEI 228 (406)
Q Consensus 154 ~~~~~~-----~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~ 228 (406)
|.-+-. -..-+++|+.++..++...|+.++++..-|+++...| ++..|-..++.|-..++.+=-+=..-+.+..
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G-~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAG-DLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 000000 1223566777777777667888999999999999999 9999999999999998765555666777778
Q ss_pred HcccHHHHHHHHHHHHh
Q 015472 229 ELDHINEARSIYKRCYS 245 (406)
Q Consensus 229 ~~g~~~~ar~l~~ral~ 245 (406)
+.|.++.|..+...-..
T Consensus 274 Ra~~~e~A~~~~~~Ftr 290 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTR 290 (517)
T ss_pred HCCCHHHHHHHHHhhcC
Confidence 88999998887665543
No 153
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=96.82 E-value=0.029 Score=46.30 Aligned_cols=60 Identities=13% Similarity=0.258 Sum_probs=45.8
Q ss_pred CCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-ccc-hHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 015472 177 NTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-SGA-MLEAWQSYISMEIELDHINEARSIYKRC 243 (406)
Q Consensus 177 ~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~-~~~-~~~lW~~y~~~E~~~g~~~~ar~l~~ra 243 (406)
+.+.-+++|+.|+++- + + ++.+|.-+... .|. .+.+|..|+.+....|++..|..||+++
T Consensus 64 nD~RyLkiWi~ya~~~---~-d---p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~G 125 (125)
T smart00777 64 NDPRYLKIWLKYADNC---D-E---PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQLG 125 (125)
T ss_pred CCHHHHHHHHHHHHhc---C-C---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHcc
Confidence 3445578999998652 3 4 57788888777 454 4569999999999999999999999764
No 154
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.82 E-value=0.2 Score=54.15 Aligned_cols=92 Identities=11% Similarity=-0.038 Sum_probs=80.1
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHH--ccCCHH
Q 015472 33 EQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER--SRASEE 110 (406)
Q Consensus 33 E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~--~~~~~e 110 (406)
+..+.+++.+...-+.+|..+|++...|...+..+.+.+.+.+++...|-.|....|...-.|..+...+++ ...+.+
T Consensus 12 al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~~dIl~ld 91 (1238)
T KOG1127|consen 12 ALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERYNDILDLD 91 (1238)
T ss_pred HHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHccchhhhhh
Confidence 455678899999999999999999999999999999877668999999999999999999999999987876 345678
Q ss_pred HHHHHHHHHHhCcc
Q 015472 111 EISTVFEKSLLCAF 124 (406)
Q Consensus 111 ~ar~if~~al~~~~ 124 (406)
++-.+|.+++...+
T Consensus 92 ~~~~~yq~~~l~le 105 (1238)
T KOG1127|consen 92 RAAKCYQRAVLILE 105 (1238)
T ss_pred HhHHHHHHHHHhhh
Confidence 89999998887544
No 155
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.80 E-value=0.0051 Score=46.89 Aligned_cols=81 Identities=16% Similarity=0.091 Sum_probs=60.7
Q ss_pred cCChhHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHH
Q 015472 36 SGDPGRVQLLYERAITDFPV--SSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEIS 113 (406)
Q Consensus 36 ~g~~~~~~~lyEral~~~P~--~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar 113 (406)
+|+++.|..+|++++...|. +...|..++..+... +..+.|..++++ ....|........++..+. ..+.+++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~-~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~-~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQ-GKYEEAIELLQK-LKLDPSNPDIHYLLARCLL-KLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHT-THHHHHHHHHHC-HTHHHCHHHHHHHHHHHHH-HTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHC-CCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHH-HhCCHHHHH
Confidence 57889999999999999995 466788777666654 478889999999 6566655555556676443 478999999
Q ss_pred HHHHHH
Q 015472 114 TVFEKS 119 (406)
Q Consensus 114 ~if~~a 119 (406)
.+|+++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999875
No 156
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.79 E-value=0.14 Score=53.04 Aligned_cols=77 Identities=10% Similarity=0.117 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHH-HHHHHHHHHHHcccHH
Q 015472 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE-AWQSYISMEIELDHIN 234 (406)
Q Consensus 156 ~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~-lW~~y~~~E~~~g~~~ 234 (406)
+++.+...|++|+.. .+ +...|..++.+....| +.+.|...|++|+...|..+. +|..=.-|. -+++
T Consensus 435 ~~~~A~~~l~rAl~L-------~p-s~~a~~~lG~~~~~~G-~~~eA~~~~~~A~~L~P~~pt~~~~~~~~f~---~~~~ 502 (517)
T PRK10153 435 KTDEAYQAINKAIDL-------EM-SWLNYVLLGKVYELKG-DNRLAADAYSTAFNLRPGENTLYWIENLVFQ---TSVE 502 (517)
T ss_pred CHHHHHHHHHHHHHc-------CC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCchHHHHHhcccc---ccHH
Confidence 444566666666554 23 2346777788888888 899999999999999888664 443333332 3445
Q ss_pred HHHHHHHHHH
Q 015472 235 EARSIYKRCY 244 (406)
Q Consensus 235 ~ar~l~~ral 244 (406)
...-.+.+++
T Consensus 503 ~~~~~~~~~~ 512 (517)
T PRK10153 503 TVVPYLYRFL 512 (517)
T ss_pred HHHHHHHhcc
Confidence 5555555544
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.74 E-value=0.018 Score=46.20 Aligned_cols=90 Identities=13% Similarity=0.088 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccch---HHHHHHHHHHHHHcc
Q 015472 155 LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM---LEAWQSYISMEIELD 231 (406)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~---~~lW~~y~~~E~~~g 231 (406)
+++..+...|.+++...+ .++.....+..++......| +++.|..+|+.++..+|++ +.+|...+......|
T Consensus 16 ~~~~~A~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 90 (119)
T TIGR02795 16 GDYADAIQAFQAFLKKYP----KSTYAPNAHYWLGEAYYAQG-KYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELG 90 (119)
T ss_pred CCHHHHHHHHHHHHHHCC----CccccHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhC
Confidence 344456666666654321 11111345666888888888 8999999999999988764 568888888888999
Q ss_pred cHHHHHHHHHHHHhcccCC
Q 015472 232 HINEARSIYKRCYSKRFTG 250 (406)
Q Consensus 232 ~~~~ar~l~~ral~~~~~~ 250 (406)
+++.|..+|.+++.. .|.
T Consensus 91 ~~~~A~~~~~~~~~~-~p~ 108 (119)
T TIGR02795 91 DKEKAKATLQQVIKR-YPG 108 (119)
T ss_pred ChHHHHHHHHHHHHH-CcC
Confidence 999999999999984 554
No 158
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.15 Score=49.12 Aligned_cols=176 Identities=16% Similarity=0.099 Sum_probs=101.2
Q ss_pred hcCChhHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHH
Q 015472 35 SSGDPGRVQLLYERAITDFP---VSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEE 111 (406)
Q Consensus 35 ~~g~~~~~~~lyEral~~~P---~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ 111 (406)
+..++..|+.+.+-.+...- .+.++|+.|+.|.. ++.++|..+|.-+.......+++|..++. ...-.|-+.+
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhL---gdY~~Al~~Y~~~~~~~~~~~el~vnLAc-c~FyLg~Y~e 109 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHL---GDYEEALNVYTFLMNKDDAPAELGVNLAC-CKFYLGQYIE 109 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhh---ccHHHHHHHHHHHhccCCCCcccchhHHH-HHHHHHHHHH
Confidence 34577778777777764422 46789999998853 57899999999888754444688888775 2233566777
Q ss_pred HHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhc----cccchhhh---hHHHHHHHHHHHHHHHhhhhcCCchHHHH
Q 015472 112 ISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILF----SGEVEGVL---DYSLIRETFQRASDYLSEQMKNTDGLLRL 184 (406)
Q Consensus 112 ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~----~~~~e~~~---~~~~~r~~f~~a~~~l~~~~~~~~~~~~l 184 (406)
|..+-.+|-+.+.. ...++.+-.. .+...|-+.+ .+..+.-+ .+.-+|..|++|++.....+..++....+
T Consensus 110 A~~~~~ka~k~pL~-~RLlfhlahk-lndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~al 187 (557)
T KOG3785|consen 110 AKSIAEKAPKTPLC-IRLLFHLAHK-LNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIAL 187 (557)
T ss_pred HHHHHhhCCCChHH-HHHHHHHHHH-hCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhh
Confidence 87777666554331 0111111100 0000000000 00111111 11236888999999775544444443434
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhccchH
Q 015472 185 YAYWAHLEQSMGKDMVSARGVWERLLKISGAML 217 (406)
Q Consensus 185 ~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~ 217 (406)
-.+.|.-...+. -++-+.++..--+..+|+++
T Consensus 188 NVy~ALCyyKlD-Yydvsqevl~vYL~q~pdSt 219 (557)
T KOG3785|consen 188 NVYMALCYYKLD-YYDVSQEVLKVYLRQFPDST 219 (557)
T ss_pred HHHHHHHHHhcc-hhhhHHHHHHHHHHhCCCcH
Confidence 444444445566 67777888888888888764
No 159
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.65 E-value=0.063 Score=45.46 Aligned_cols=53 Identities=21% Similarity=0.297 Sum_probs=23.4
Q ss_pred cCChhHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCC
Q 015472 36 SGDPGRVQLLYERAITDFPVS---SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCP 89 (406)
Q Consensus 36 ~g~~~~~~~lyEral~~~P~~---~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P 89 (406)
.|+...+...++..+..+|.+ ...++..+...... +..+.|...|+.++...|
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~-g~~~~A~~~l~~~~~~~~ 79 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQ-GDYDEAKAALEKALANAP 79 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhhCC
Confidence 344455555555555555554 22222333332222 234455555555555443
No 160
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.58 E-value=0.15 Score=48.42 Aligned_cols=179 Identities=14% Similarity=0.133 Sum_probs=102.6
Q ss_pred hhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCcc--ccHHHHHHHHHHHHHHHHHHHhcccc
Q 015472 73 VGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAF--STFEEYLDLFLTRIDGLRRRILFSGE 150 (406)
Q Consensus 73 ~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~--~~~~~~~~l~~~~~~~l~Rr~~~~~~ 150 (406)
+.+.|...|++|-. .+ +..+++++|-..|.+|..+.. .....-...+.. ...+.++
T Consensus 30 ~~e~Aa~~y~~Aa~--------------~f-k~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~-Aa~~~k~------ 87 (282)
T PF14938_consen 30 DYEEAADLYEKAAN--------------CF-KLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEE-AANCYKK------ 87 (282)
T ss_dssp HHHHHHHHHHHHHH--------------HH-HHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHH-HHHHHHH------
T ss_pred CHHHHHHHHHHHHH--------------HH-HHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHh------
Confidence 45677777777743 12 234666667777777665422 111111111111 1111111
Q ss_pred chhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcc---c---hHHHHHHH
Q 015472 151 VEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSM-GKDMVSARGVWERLLKISG---A---MLEAWQSY 223 (406)
Q Consensus 151 ~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~-~~d~~~Ar~ife~al~~~~---~---~~~lW~~y 223 (406)
.++..+...|++|++.+... +.......+....|.+.... + +++.|...|++|+..+. . ...+....
T Consensus 88 ----~~~~~Ai~~~~~A~~~y~~~-G~~~~aA~~~~~lA~~ye~~~~-d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~ 161 (282)
T PF14938_consen 88 ----GDPDEAIECYEKAIEIYREA-GRFSQAAKCLKELAEIYEEQLG-DYEKAIEYYQKAAELYEQEGSPHSAAECLLKA 161 (282)
T ss_dssp ----TTHHHHHHHHHHHHHHHHHC-T-HHHHHHHHHHHHHHHCCTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ----hCHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHH
Confidence 24446677888888765321 11122345777888887777 7 99999999999999842 1 23588999
Q ss_pred HHHHHHcccHHHHHHHHHHHHhcccCCCC-hH---HH-HHHHHHHHHHhCCHHHHHHHHHhh
Q 015472 224 ISMEIELDHINEARSIYKRCYSKRFTGTG-SE---DI-CHAWLRFEREYGTLEDFDHSVQKV 280 (406)
Q Consensus 224 ~~~E~~~g~~~~ar~l~~ral~~~~~~~~-~~---~i-~~~~i~fE~~~G~~e~~~~a~~k~ 280 (406)
+.+....|+++.|..+|++.....+..+. .. .. ..+ +-.-...||+-..+.++++.
T Consensus 162 A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a-~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 162 ADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA-ILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH-HHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH-HHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999874322211 11 12 222 22333468887777777764
No 161
>PRK11906 transcriptional regulator; Provisional
Probab=96.53 E-value=0.12 Score=51.75 Aligned_cols=129 Identities=12% Similarity=0.042 Sum_probs=88.2
Q ss_pred hhHHHHHHHhcCCCCChhh--HHHHHHHHHHHHh-cC------ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchh
Q 015472 4 ARAHLEEQISRQDLSDSEK--FQQYMIYLKYEQS-SG------DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVG 74 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~--~~~w~~Yi~~E~~-~g------~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~ 74 (406)
+...|++++...+ .||+. .-.|..+..|-.. +| +...+..+-+||+..+|.++-.-...+..+...+ ..
T Consensus 277 Al~lf~ra~~~~~-ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~-~~ 354 (458)
T PRK11906 277 AMTIFDRLQNKSD-IQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG-QA 354 (458)
T ss_pred HHHHHHHHhhccc-CCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc-ch
Confidence 3446888883333 22221 2245555555442 22 3457889999999999999865444443333223 47
Q ss_pred hhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCcccc-HHHHHHHHH
Q 015472 75 NVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFST-FEEYLDLFL 135 (406)
Q Consensus 75 e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~-~~~~~~l~~ 135 (406)
+.+...|+||+..+|++...|..++. +....|+.+++...+++|+...|.. .-..+++|.
T Consensus 355 ~~a~~~f~rA~~L~Pn~A~~~~~~~~-~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~ 415 (458)
T PRK11906 355 KVSHILFEQAKIHSTDIASLYYYRAL-VHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECV 415 (458)
T ss_pred hhHHHHHHHHhhcCCccHHHHHHHHH-HHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHH
Confidence 88999999999999999999998886 5567899999999999999987742 223445554
No 162
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.49 E-value=0.26 Score=41.64 Aligned_cols=59 Identities=14% Similarity=0.081 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 015472 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCY 244 (406)
Q Consensus 184 l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral 244 (406)
....++.+....| +++.|..+++. +...+..+.++...++.....|+++.|+..|++||
T Consensus 87 a~l~LA~~~~~~~-~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 87 ARLRLARILLQQG-QYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 3445666667777 78888877755 22333445567777777778888888888888764
No 163
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.48 E-value=0.066 Score=53.20 Aligned_cols=57 Identities=18% Similarity=0.057 Sum_probs=31.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 015472 188 WAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (406)
Q Consensus 188 ~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~ 245 (406)
.|++....+ +-.+|..+.+++++..|.++++....++|.+..|+++.|..+.++|+.
T Consensus 206 LA~v~l~~~-~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ 262 (395)
T PF09295_consen 206 LARVYLLMN-EEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVE 262 (395)
T ss_pred HHHHHHhcC-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 444444444 444555555555555555555555555555555555555555555554
No 164
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.45 E-value=0.046 Score=51.37 Aligned_cols=64 Identities=14% Similarity=0.200 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhccch---HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCC
Q 015472 186 AYWAHLEQSMGKDMVSARGVWERLLKISGAM---LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGT 251 (406)
Q Consensus 186 ~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~---~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~ 251 (406)
...+.+....| +++.|+..|+++++.+|++ ++.|...+......|+.+.|+.+|++++. .+|.+
T Consensus 184 y~LG~~y~~~g-~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~-~yP~s 250 (263)
T PRK10803 184 YWLGQLNYNKG-KKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK-KYPGT 250 (263)
T ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCcCC
Confidence 33444455556 6666666666666665543 44555555555566666666666666665 35543
No 165
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.43 E-value=0.074 Score=50.03 Aligned_cols=92 Identities=9% Similarity=0.094 Sum_probs=70.3
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc
Q 015472 32 YEQSSGDPGRVQLLYERAITDFPVS---SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV---GELWVRSLLSLERS 105 (406)
Q Consensus 32 ~E~~~g~~~~~~~lyEral~~~P~~---~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~---~~lW~~y~~~lE~~ 105 (406)
+....|+++.+...|+..+..+|.+ +..+...+..... .+..+.|...|++++...|.+ .+.|...+..+. .
T Consensus 152 l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~-~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~-~ 229 (263)
T PRK10803 152 LVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN-KGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQ-D 229 (263)
T ss_pred HHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHH-H
Confidence 3355799999999999999999987 3444444443333 346789999999999988864 577777666443 4
Q ss_pred cCCHHHHHHHHHHHHhCccc
Q 015472 106 RASEEEISTVFEKSLLCAFS 125 (406)
Q Consensus 106 ~~~~e~ar~if~~al~~~~~ 125 (406)
.++.+.|..+|++.+...|.
T Consensus 230 ~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 230 KGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcC
Confidence 78999999999999986664
No 166
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.41 E-value=0.028 Score=41.89 Aligned_cols=64 Identities=19% Similarity=0.244 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---cc-c---hHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 015472 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKI---SG-A---MLEAWQSYISMEIELDHINEARSIYKRCYS 245 (406)
Q Consensus 181 ~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~---~~-~---~~~lW~~y~~~E~~~g~~~~ar~l~~ral~ 245 (406)
...++...+.+....| ++++|...|++++.. .+ + ....+...+......|+++.|..+|++|+.
T Consensus 4 ~a~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 4 TANAYNNLARVYRELG-RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3456778888888999 999999999999976 23 2 245777788888899999999999999986
No 167
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.37 E-value=0.05 Score=51.10 Aligned_cols=84 Identities=19% Similarity=0.174 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHH
Q 015472 155 LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHIN 234 (406)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~ 234 (406)
.+|..+...|.+|+.+ .|.+.-++.+-|..+.++| .++.|.+-.+.||.++|.+...|.........+|++.
T Consensus 95 ~~Y~eAv~kY~~AI~l-------~P~nAVyycNRAAAy~~Lg-~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIEL-------DPTNAVYYCNRAAAYSKLG-EYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred hhHHHHHHHHHHHHhc-------CCCcchHHHHHHHHHHHhc-chHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 3444555556666554 4556567777788889999 8999999999999999999889988888888999999
Q ss_pred HHHHHHHHHHhc
Q 015472 235 EARSIYKRCYSK 246 (406)
Q Consensus 235 ~ar~l~~ral~~ 246 (406)
.|...|++||..
T Consensus 167 ~A~~aykKaLel 178 (304)
T KOG0553|consen 167 EAIEAYKKALEL 178 (304)
T ss_pred HHHHHHHhhhcc
Confidence 999999999973
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.35 E-value=0.26 Score=42.93 Aligned_cols=48 Identities=10% Similarity=0.047 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHccc
Q 015472 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDH 232 (406)
Q Consensus 184 l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~ 232 (406)
++..++.+....| +++.|..+|++++...|++...|..++......|+
T Consensus 74 ~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 74 ILYNMGIIYASNG-EHDKALEYYHQALELNPKQPSALNNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 5556666666777 78888888888888888777777777766666555
No 169
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.28 E-value=0.089 Score=52.32 Aligned_cols=77 Identities=14% Similarity=0.085 Sum_probs=46.6
Q ss_pred cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHH
Q 015472 36 SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEIST 114 (406)
Q Consensus 36 ~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~ 114 (406)
.++...+..+..++|..+|.+.+++...+.|+...+ ..+.|..+.++|+...|.....|..++..+ ...++++.|.-
T Consensus 213 ~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~-~~~lAL~iAk~av~lsP~~f~~W~~La~~Y-i~~~d~e~ALl 289 (395)
T PF09295_consen 213 MNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK-KYELALEIAKKAVELSPSEFETWYQLAECY-IQLGDFENALL 289 (395)
T ss_pred cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCchhHHHHHHHHHHH-HhcCCHHHHHH
Confidence 444455666666666666666666666666665533 446666666666666666666666666533 23566666553
No 170
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.25 E-value=0.18 Score=41.45 Aligned_cols=90 Identities=17% Similarity=0.067 Sum_probs=70.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCC---CHHHHHHHHHHHH
Q 015472 30 LKYEQSSGDPGRVQLLYERAITDFPVS---SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPW---VGELWVRSLLSLE 103 (406)
Q Consensus 30 i~~E~~~g~~~~~~~lyEral~~~P~~---~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~---~~~lW~~y~~~lE 103 (406)
....-..|+.+++..+|++++..-+.. ...++.++..+... +..+++..+++.++...|. +..++.-++..+.
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~L-G~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNL-GRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 344556799999999999999974433 56888888887754 4789999999999999887 7788888887664
Q ss_pred HccCCHHHHHHHHHHHHh
Q 015472 104 RSRASEEEISTVFEKSLL 121 (406)
Q Consensus 104 ~~~~~~e~ar~if~~al~ 121 (406)
..+..+++...+..++.
T Consensus 87 -~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 87 -NLGRPKEALEWLLEALA 103 (120)
T ss_pred -HCCCHHHHHHHHHHHHH
Confidence 46788888777776664
No 171
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.13 E-value=0.23 Score=47.46 Aligned_cols=91 Identities=16% Similarity=0.207 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHH
Q 015472 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLR 262 (406)
Q Consensus 183 ~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~ 262 (406)
.+...|..+-.--. .+..|..+|+.....+|.++.+....+-..+..|+++.|..++..|+.. -| . ....+---+.
T Consensus 168 qLa~awv~l~~g~e-~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~-~~-~-~~d~LaNliv 243 (290)
T PF04733_consen 168 QLAEAWVNLATGGE-KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK-DP-N-DPDTLANLIV 243 (290)
T ss_dssp HHHHHHHHHHHTTT-CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C-C-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCch-hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-cc-C-CHHHHHHHHH
Confidence 34445544433222 5788888888877777777888888888888888888888888888864 22 2 2344444566
Q ss_pred HHHHhCCH-HHHHHHH
Q 015472 263 FEREYGTL-EDFDHSV 277 (406)
Q Consensus 263 fE~~~G~~-e~~~~a~ 277 (406)
.....|.. +.+++.+
T Consensus 244 ~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 244 CSLHLGKPTEAAERYL 259 (290)
T ss_dssp HHHHTT-TCHHHHHHH
T ss_pred HHHHhCCChhHHHHHH
Confidence 66667766 4344333
No 172
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.00 E-value=2.8 Score=44.88 Aligned_cols=99 Identities=9% Similarity=0.065 Sum_probs=62.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHH------Hh-----------------c-cchHHHHHHHHHHHHHcccHHHHHHH----
Q 015472 188 WAHLEQSMGKDMVSARGVWERLL------KI-----------------S-GAMLEAWQSYISMEIELDHINEARSI---- 239 (406)
Q Consensus 188 ~a~~e~~~~~d~~~Ar~ife~al------~~-----------------~-~~~~~lW~~y~~~E~~~g~~~~ar~l---- 239 (406)
-|++....|+...+|..+|.+|= .. . ++++.+...-++|...+.++++|..+
T Consensus 1027 aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1027 AARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34445566667777777776542 11 1 35788999999999999999998876
Q ss_pred --HHHHHhccc---------------CCC-------ChHHHHHHHHHHHHHhCCHHHHHHHHHhhchhHHHHHH
Q 015472 240 --YKRCYSKRF---------------TGT-------GSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRL 289 (406)
Q Consensus 240 --~~ral~~~~---------------~~~-------~~~~i~~~~i~fE~~~G~~e~~~~a~~k~~~~~~~~~~ 289 (406)
|++|+.... |.. ....|.+.-.+|+...|+... |-+|.+..-.++..
T Consensus 1107 r~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~---AtKKfTQAGdKl~A 1177 (1416)
T KOG3617|consen 1107 REFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHA---ATKKFTQAGDKLSA 1177 (1416)
T ss_pred HHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHH---HHHHHhhhhhHHHH
Confidence 455555310 110 013678888888888888654 34555555555433
No 173
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.98 E-value=0.0079 Score=37.56 Aligned_cols=33 Identities=12% Similarity=0.279 Sum_probs=30.7
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHcccHHHHH
Q 015472 205 VWERLLKISGAMLEAWQSYISMEIELDHINEAR 237 (406)
Q Consensus 205 ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar 237 (406)
+|+++|..+|+++..|..++.+....|+++.|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 478999999999999999999999999999886
No 174
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.69 E-value=0.055 Score=53.98 Aligned_cols=68 Identities=12% Similarity=-0.020 Sum_probs=61.7
Q ss_pred CchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHH---HHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 178 TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEA---WQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 178 ~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~l---W~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
.|.....|.+++..+...| +++.|...|+++|..+|++.+. |.+.+.....+|+++.|...|++|+..
T Consensus 71 dP~~a~a~~NLG~AL~~lG-ryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKG-RVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566789999999999999 9999999999999999998854 999999999999999999999999974
No 175
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.66 E-value=0.92 Score=41.02 Aligned_cols=113 Identities=11% Similarity=-0.001 Sum_probs=66.5
Q ss_pred HHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCC
Q 015472 10 EQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCP 89 (406)
Q Consensus 10 ~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P 89 (406)
+.|.+....+.+.......-+.+--+.|-.+.|+.-|.++|...|.-+++..-.+.|+-.. ++.+.+..+|+-.+...|
T Consensus 52 qlL~~~~l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a-~~fdaa~eaFds~~ELDp 130 (297)
T COG4785 52 QILASRALTDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA-GNFDAAYEAFDSVLELDP 130 (297)
T ss_pred HHHHhccCChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhc-ccchHHHHHhhhHhccCC
Confidence 3344433233333333333344444456667777888888888888888776666676544 367778888888888777
Q ss_pred CCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCcc
Q 015472 90 WVGELWVRSLLSLERSRASEEEISTVFEKSLLCAF 124 (406)
Q Consensus 90 ~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~ 124 (406)
...-...+.+..+- -.|++.-|.+-|..--+..|
T Consensus 131 ~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~D~ 164 (297)
T COG4785 131 TYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQDDP 164 (297)
T ss_pred cchHHHhccceeee-ecCchHhhHHHHHHHHhcCC
Confidence 65443333333232 25666666666655555443
No 176
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.53 E-value=0.54 Score=38.58 Aligned_cols=62 Identities=15% Similarity=-0.010 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc---hHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 015472 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGA---MLEAWQSYISMEIELDHINEARSIYKRCYS 245 (406)
Q Consensus 183 ~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~---~~~lW~~y~~~E~~~g~~~~ar~l~~ral~ 245 (406)
+.++.++.....+| .++.|..+++.++..+|+ +..++..++......|+.++|...+-.++.
T Consensus 39 ~a~i~lastlr~LG-~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 39 RALIQLASTLRNLG-RYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45556666667777 788888888888887776 566776677667777888888877777665
No 177
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.47 E-value=0.28 Score=42.95 Aligned_cols=87 Identities=13% Similarity=0.019 Sum_probs=41.7
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcC-------ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc----
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSG-------DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLK---- 72 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g-------~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~---- 72 (406)
+|+.||.....+| .|.+++-.|-..+...-... -++.+..-|+.||..+|...+.-...+.-+...+.
T Consensus 10 ark~aea~y~~nP-~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d 88 (186)
T PF06552_consen 10 ARKKAEAAYAKNP-LDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPD 88 (186)
T ss_dssp HHHHHHHHHHH-T-T-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhCc-HhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCC
Confidence 5677777777766 45555556644443332211 13456666777777777765554444433322211
Q ss_pred ------hhhhHHHHHHHHHHhCCCC
Q 015472 73 ------VGNVVRDVYSRATKNCPWV 91 (406)
Q Consensus 73 ------~~e~a~~vyerA~~~~P~~ 91 (406)
.++.|...|++|+...|.+
T Consensus 89 ~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 89 TAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 1234555555555555554
No 178
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.45 E-value=0.19 Score=43.62 Aligned_cols=83 Identities=11% Similarity=0.071 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHH-------
Q 015472 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEI------- 228 (406)
Q Consensus 156 ~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~------- 228 (406)
+++.+...|.+++..... ......+|...+.+....| +++.|...|++++...|.....|...+....
T Consensus 50 ~~~~A~~~~~~al~l~~~----~~~~~~~~~~lg~~~~~~g-~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~ 124 (168)
T CHL00033 50 EYAEALQNYYEAMRLEID----PYDRSYILYNIGLIHTSNG-EHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAI 124 (168)
T ss_pred CHHHHHHHHHHHHhcccc----chhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHH
Confidence 344555666666554210 1112346777777777788 7888888888888888777776666666555
Q ss_pred HcccHHHHHHHHHHH
Q 015472 229 ELDHINEARSIYKRC 243 (406)
Q Consensus 229 ~~g~~~~ar~l~~ra 243 (406)
..|+++.|...|+++
T Consensus 125 ~~g~~~~A~~~~~~a 139 (168)
T CHL00033 125 EQGDSEIAEAWFDQA 139 (168)
T ss_pred HcccHHHHHHHHHHH
Confidence 556666444444443
No 179
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.25 E-value=0.019 Score=35.77 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=17.1
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHh
Q 015472 46 YERAITDFPVSSDLWLDYTQYLDKT 70 (406)
Q Consensus 46 yEral~~~P~~~~lW~~Y~~~l~~~ 70 (406)
|++||..+|.++..|..++.++...
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~ 26 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQ 26 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHC
Confidence 6677777777777777777666544
No 180
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=4.2 Score=41.33 Aligned_cols=209 Identities=13% Similarity=0.092 Sum_probs=117.7
Q ss_pred ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHH---HHHH------ccCC
Q 015472 38 DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLL---SLER------SRAS 108 (406)
Q Consensus 38 ~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~---~lE~------~~~~ 108 (406)
++..+...|..++... .+...-...+...... +.....+...+.|+..- ..+|..|-. .+-+ ..++
T Consensus 239 ~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~-~~~~~c~~~c~~a~E~g---re~rad~klIak~~~r~g~a~~k~~~ 313 (539)
T KOG0548|consen 239 DFETAIQHYAKALELA-TDITYLNNIAAVYLER-GKYAECIELCEKAVEVG---RELRADYKLIAKALARLGNAYTKRED 313 (539)
T ss_pred hHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhc-cHHHHhhcchHHHHHHh---HHHHHHHHHHHHHHHHhhhhhhhHHh
Confidence 5667788888888877 5555444444322222 23445555555555432 233333221 1111 1255
Q ss_pred HHHHHHHHHHHHhC--ccccHHHHHHHHHHHHHHHHHHHhccccc----------hhhhhHHHHHHHHHHHHHHHhhhhc
Q 015472 109 EEEISTVFEKSLLC--AFSTFEEYLDLFLTRIDGLRRRILFSGEV----------EGVLDYSLIRETFQRASDYLSEQMK 176 (406)
Q Consensus 109 ~e~ar~if~~al~~--~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~----------e~~~~~~~~r~~f~~a~~~l~~~~~ 176 (406)
++.+...|+++|.- .+......-.....--...+.-++.+... -..+|+..+...|++|+.
T Consensus 314 ~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk------- 386 (539)
T KOG0548|consen 314 YEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK------- 386 (539)
T ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh-------
Confidence 77788888888863 22111111111100000000001111100 012334444444544444
Q ss_pred CCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHH
Q 015472 177 NTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDI 256 (406)
Q Consensus 177 ~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i 256 (406)
..|....++.+-|--...++ .+..|.+--+.++..+|+....|+.=+..+....+++.|...|..++.. .+....+
T Consensus 387 r~P~Da~lYsNRAac~~kL~-~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~---dp~~~e~ 462 (539)
T KOG0548|consen 387 RDPEDARLYSNRAACYLKLG-EYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL---DPSNAEA 462 (539)
T ss_pred cCCchhHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CchhHHH
Confidence 34666677777777778888 8888998899999999998888888888888888999999999999974 2334555
Q ss_pred HHHHHH
Q 015472 257 CHAWLR 262 (406)
Q Consensus 257 ~~~~i~ 262 (406)
...|..
T Consensus 463 ~~~~~r 468 (539)
T KOG0548|consen 463 IDGYRR 468 (539)
T ss_pred HHHHHH
Confidence 555555
No 181
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.13 E-value=0.25 Score=41.65 Aligned_cols=93 Identities=17% Similarity=0.145 Sum_probs=66.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHH----HHHHHHH
Q 015472 30 LKYEQSSGDPGRVQLLYERAITDFPVS-----SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGE----LWVRSLL 100 (406)
Q Consensus 30 i~~E~~~g~~~~~~~lyEral~~~P~~-----~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~----lW~~y~~ 100 (406)
+.-..+.|++..|...|+.....+|.+ ..||+.|+-|.. +..+.|...|+|-++++|.+.. ++..-+.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~---~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQ---GDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 455667899999999999999999865 679999998854 3678899999999999997652 2222222
Q ss_pred HHHHc-------------cCCHHHHHHHHHHHHhCccc
Q 015472 101 SLERS-------------RASEEEISTVFEKSLLCAFS 125 (406)
Q Consensus 101 ~lE~~-------------~~~~e~ar~if~~al~~~~~ 125 (406)
.++.. ......|..-|+..+..-|+
T Consensus 94 ~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~ 131 (142)
T PF13512_consen 94 YYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPN 131 (142)
T ss_pred HHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcC
Confidence 23221 12256788888888886554
No 182
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.13 E-value=0.1 Score=52.15 Aligned_cols=68 Identities=13% Similarity=0.079 Sum_probs=54.9
Q ss_pred ChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHhcchhhhHHHHHHHHHHh
Q 015472 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDL---WLDYTQYLDKTLKVGNVVRDVYSRATKN 87 (406)
Q Consensus 19 ~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~l---W~~Y~~~l~~~~~~~e~a~~vyerA~~~ 87 (406)
+|.....|.+++......|+++.|...|++||..+|.+.+. |.+.+..+... +..++|...|++|+..
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~L-Gr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYR-EEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Confidence 46677788888888888889999999999999999988854 88888776654 4678888899998885
No 183
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.09 E-value=0.46 Score=40.00 Aligned_cols=61 Identities=15% Similarity=0.073 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 015472 59 LWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLL 121 (406)
Q Consensus 59 lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~ 121 (406)
+...++..+... +..+.+..++++++...|.+..+|..++..+. ..|+...|..+|+++..
T Consensus 64 ~~~~l~~~~~~~-~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~-~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEA-GDYEEALRLLQRALALDPYDEEAYRLLMRALA-AQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHT-T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 344445444433 25566777777777777777777777766443 46666677766666654
No 184
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.09 E-value=2.4 Score=38.03 Aligned_cols=60 Identities=25% Similarity=0.258 Sum_probs=42.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCH
Q 015472 30 LKYEQSSGDPGRVQLLYERAITDFPVS-----SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVG 92 (406)
Q Consensus 30 i~~E~~~g~~~~~~~lyEral~~~P~~-----~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~ 92 (406)
+.-....|++..|...|++.+..+|.+ ..+|+.++.|- .++.+.|...|++-++..|.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~---~~~y~~A~~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK---QGDYEEAIAAYERFIKLYPNSP 76 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHH-TT-T
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHCCCCc
Confidence 444566899999999999999999976 34566666553 2467889999999999999865
No 185
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=2.4 Score=43.03 Aligned_cols=117 Identities=9% Similarity=0.057 Sum_probs=72.7
Q ss_pred cCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHH
Q 015472 106 RASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLY 185 (406)
Q Consensus 106 ~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~ 185 (406)
.+++..|-..|.+||...|.....|-+--.-+. ....|..|+.-+...+...|+.+..|
T Consensus 371 ~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~---------------------kL~~~~~aL~Da~~~ieL~p~~~kgy 429 (539)
T KOG0548|consen 371 KGDYPEAVKHYTEAIKRDPEDARLYSNRAACYL---------------------KLGEYPEALKDAKKCIELDPNFIKAY 429 (539)
T ss_pred ccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH---------------------HHhhHHHHHHHHHHHHhcCchHHHHH
Confidence 578888999999999987765444432211110 01222233332222333356677788
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 015472 186 AYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCY 244 (406)
Q Consensus 186 ~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral 244 (406)
..-+..+.... ++++|...|+.++..+|++.++--.|.+....+.....--.++++++
T Consensus 430 ~RKg~al~~mk-~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r~~ 487 (539)
T KOG0548|consen 430 LRKGAALRAMK-EYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRRAM 487 (539)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHhhc
Confidence 77777777777 89999999999999999988877777766554322222333444433
No 186
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.72 E-value=0.98 Score=44.48 Aligned_cols=160 Identities=16% Similarity=0.081 Sum_probs=99.8
Q ss_pred chhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHH--------HHHHHHHHHHHHH
Q 015472 72 KVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEY--------LDLFLTRIDGLRR 143 (406)
Q Consensus 72 ~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~--------~~l~~~~~~~l~R 143 (406)
+..+.+..+--+.++..+.+...-.-....+ ....+.+.+...|+++|..+|..-..- +..+..+.+.+.
T Consensus 183 ~~~~~a~~ea~~ilkld~~n~~al~vrg~~~-yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~f- 260 (486)
T KOG0550|consen 183 GDYDEAQSEAIDILKLDATNAEALYVRGLCL-YYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAF- 260 (486)
T ss_pred ccchhHHHHHHHHHhcccchhHHHHhccccc-ccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHh-
Confidence 3556677777777777776543221112212 235778888888899888877522111 111111111110
Q ss_pred HHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHH
Q 015472 144 RILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSY 223 (406)
Q Consensus 144 r~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y 223 (406)
..+.+..+-..|.+|+..- +.+..++..++.+-+..-..+| ....|..--+.++++++......+.-
T Consensus 261 ---------k~G~y~~A~E~Yteal~id---P~n~~~naklY~nra~v~~rLg-rl~eaisdc~~Al~iD~syikall~r 327 (486)
T KOG0550|consen 261 ---------KNGNYRKAYECYTEALNID---PSNKKTNAKLYGNRALVNIRLG-RLREAISDCNEALKIDSSYIKALLRR 327 (486)
T ss_pred ---------hccchhHHHHHHHHhhcCC---ccccchhHHHHHHhHhhhcccC-CchhhhhhhhhhhhcCHHHHHHHHHH
Confidence 1134445666677776642 2233455566777777777788 78888888888888888877777777
Q ss_pred HHHHHHcccHHHHHHHHHHHHhc
Q 015472 224 ISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 224 ~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
++.-+-++.++.|+.-|+.|++.
T Consensus 328 a~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 328 ANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777788888888888888874
No 187
>PRK15331 chaperone protein SicA; Provisional
Probab=94.71 E-value=0.72 Score=39.86 Aligned_cols=101 Identities=8% Similarity=-0.147 Sum_probs=74.5
Q ss_pred hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHH
Q 015472 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSL 99 (406)
Q Consensus 20 ~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~ 99 (406)
++.++.--.|+--.-..|+++.|..+|.-....+|.+++.|+.++..... .+..+.|...|-.|....+.++..-...+
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~-~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL-KKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 34454333444444568999999999999999999999999999987764 35789999999999987655443222223
Q ss_pred HHHHHccCCHHHHHHHHHHHHhC
Q 015472 100 LSLERSRASEEEISTVFEKSLLC 122 (406)
Q Consensus 100 ~~lE~~~~~~e~ar~if~~al~~ 122 (406)
..+ ...++.+.|+..|+-++..
T Consensus 113 qC~-l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 113 QCQ-LLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHH-HHhCCHHHHHHHHHHHHhC
Confidence 322 3478999999999999984
No 188
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=94.51 E-value=4 Score=37.85 Aligned_cols=59 Identities=15% Similarity=0.089 Sum_probs=45.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCH
Q 015472 31 KYEQSSGDPGRVQLLYERAITDFPVSS-----DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVG 92 (406)
Q Consensus 31 ~~E~~~g~~~~~~~lyEral~~~P~~~-----~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~ 92 (406)
.-....|+++.|...|+..+..+|.++ .+|+.|+-|- .++.+.|...|++.++..|.+.
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~---~~~y~~A~~~~e~fi~~~P~~~ 103 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK---NADLPLAQAAIDRFIRLNPTHP 103 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhCcCCC
Confidence 334457899999999999999999764 3566666553 3467889999999999988764
No 189
>PRK15331 chaperone protein SicA; Provisional
Probab=94.46 E-value=2.7 Score=36.40 Aligned_cols=91 Identities=8% Similarity=-0.087 Sum_probs=68.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHH
Q 015472 187 YWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFERE 266 (406)
Q Consensus 187 ~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~ 266 (406)
.+|--....| +++.|..+|.-++..++.++++|+..+......++++.|..+|..|.... ..+|...+..-..+- .
T Consensus 42 ~~Ay~~y~~G-k~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~p~f~agqC~l-~ 117 (165)
T PRK15331 42 AHAYEFYNQG-RLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYRPVFFTGQCQL-L 117 (165)
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCCccchHHHHHH-H
Confidence 3444445677 99999999999999999999999999999999999999999999998643 334444444434332 3
Q ss_pred hCCHHHHHHHHHhhc
Q 015472 267 YGTLEDFDHSVQKVT 281 (406)
Q Consensus 267 ~G~~e~~~~a~~k~~ 281 (406)
.|+.+....|+..+.
T Consensus 118 l~~~~~A~~~f~~a~ 132 (165)
T PRK15331 118 MRKAAKARQCFELVN 132 (165)
T ss_pred hCCHHHHHHHHHHHH
Confidence 577777666655443
No 190
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.45 E-value=0.34 Score=40.81 Aligned_cols=61 Identities=20% Similarity=0.150 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 015472 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (406)
Q Consensus 184 l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~ 245 (406)
+....+......| +++.|..+..+++..+|.+..+|...+......|+...|..+|+++..
T Consensus 64 ~~~~l~~~~~~~~-~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAG-DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4445666667788 999999999999999999999999999999999999999999998865
No 191
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=94.21 E-value=1.1 Score=42.86 Aligned_cols=138 Identities=12% Similarity=0.017 Sum_probs=85.4
Q ss_pred ccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHH
Q 015472 105 SRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRL 184 (406)
Q Consensus 105 ~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l 184 (406)
..++.+.|++.|+.+-+...+. ....+...|+.... ++ ..+..+..+|++..+. .+....+
T Consensus 143 ~~~R~dlA~k~l~~~~~~~eD~--~l~qLa~awv~l~~----g~------e~~~~A~y~f~El~~~-------~~~t~~~ 203 (290)
T PF04733_consen 143 KMNRPDLAEKELKNMQQIDEDS--ILTQLAEAWVNLAT----GG------EKYQDAFYIFEELSDK-------FGSTPKL 203 (290)
T ss_dssp HTT-HHHHHHHHHHHHCCSCCH--HHHHHHHHHHHHHH----TT------TCCCHHHHHHHHHHCC-------S--SHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHHh----Cc------hhHHHHHHHHHHHHhc-------cCCCHHH
Confidence 3677888888888877665431 23344455543321 11 1123566666664332 2334556
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccH-HHHHHHHHHHHhcccCCCChHHHHHHHHHH
Q 015472 185 YAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHI-NEARSIYKRCYSKRFTGTGSEDICHAWLRF 263 (406)
Q Consensus 185 ~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~-~~ar~l~~ral~~~~~~~~~~~i~~~~i~f 263 (406)
....+.....+| +++.|..+++.++..+|.++++..+.+-+....|.. +.+..++...... .|. ..+...+..-
T Consensus 204 lng~A~~~l~~~-~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~-~p~---h~~~~~~~~~ 278 (290)
T PF04733_consen 204 LNGLAVCHLQLG-HYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS-NPN---HPLVKDLAEK 278 (290)
T ss_dssp HHHHHHHHHHCT--HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH-TTT---SHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh-CCC---ChHHHHHHHH
Confidence 667777888899 999999999999999999999999999998888877 6677777765542 331 2344555444
Q ss_pred HHH
Q 015472 264 ERE 266 (406)
Q Consensus 264 E~~ 266 (406)
+..
T Consensus 279 ~~~ 281 (290)
T PF04733_consen 279 EAE 281 (290)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 192
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.04 E-value=0.63 Score=40.77 Aligned_cols=82 Identities=16% Similarity=0.025 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc--c-------hhhhHHHHHHHHHHhCCCCHHHHHHHHHHH---HHccC
Q 015472 40 GRVQLLYERAITDFPVSSDLWLDYTQYLDKTL--K-------VGNVVRDVYSRATKNCPWVGELWVRSLLSL---ERSRA 107 (406)
Q Consensus 40 ~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~--~-------~~e~a~~vyerA~~~~P~~~~lW~~y~~~l---E~~~~ 107 (406)
+.++..|+.....+|.+++.+.+++-.|.... + -.+.|..-|+.|+..+|........++..+ -....
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~ 87 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP 87 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence 46888999999999999999999997665432 1 135577888999999998764332333211 11134
Q ss_pred CHHHHHHHHHHHHh
Q 015472 108 SEEEISTVFEKSLL 121 (406)
Q Consensus 108 ~~e~ar~if~~al~ 121 (406)
+..++...|++|..
T Consensus 88 d~~~A~~~F~kA~~ 101 (186)
T PF06552_consen 88 DTAEAEEYFEKATE 101 (186)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH
Confidence 44455555555554
No 193
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.95 E-value=3.2 Score=41.02 Aligned_cols=87 Identities=16% Similarity=0.095 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHhhhhc-----CCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchH----HHHHHHHHHHHH
Q 015472 159 LIRETFQRASDYLSEQMK-----NTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAML----EAWQSYISMEIE 229 (406)
Q Consensus 159 ~~r~~f~~a~~~l~~~~~-----~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~----~lW~~y~~~E~~ 229 (406)
.+...|++++..-+.... -.+..+..|..-++.....| ++..|-++|-.||.+.|++. .++..-+..-.+
T Consensus 221 ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G-~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~r 299 (486)
T KOG0550|consen 221 KAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNG-NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIR 299 (486)
T ss_pred HHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhcc-chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcc
Confidence 344566666553211110 12445678888888888888 99999999999999998753 567777777888
Q ss_pred cccHHHHHHHHHHHHhc
Q 015472 230 LDHINEARSIYKRCYSK 246 (406)
Q Consensus 230 ~g~~~~ar~l~~ral~~ 246 (406)
+|+...|.+--+.|+..
T Consensus 300 Lgrl~eaisdc~~Al~i 316 (486)
T KOG0550|consen 300 LGRLREAISDCNEALKI 316 (486)
T ss_pred cCCchhhhhhhhhhhhc
Confidence 89999999999999864
No 194
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.32 E-value=0.23 Score=30.19 Aligned_cols=31 Identities=16% Similarity=0.294 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Q 015472 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGA 215 (406)
Q Consensus 184 l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~ 215 (406)
+|...+.+....| +++.|+..|++++..+|+
T Consensus 3 ~~~~lg~~~~~~~-~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLG-NYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhC-CHHHHHHHHHHHHHHCcC
Confidence 5566677777777 788888888888877775
No 195
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.99 E-value=18 Score=40.16 Aligned_cols=61 Identities=11% Similarity=0.060 Sum_probs=48.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhc---c---chHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 185 YAYWAHLEQSMGKDMVSARGVWERLLKIS---G---AMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 185 ~~~~a~~e~~~~~d~~~Ar~ife~al~~~---~---~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
+...+......| +..+|..+|++++... + ........++......|+.+.|+..+.+|+..
T Consensus 694 ~~~~a~~~~~~g-~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 694 WRNIARAQILLG-QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455677777788 8999999999999863 2 22346677788888899999999999999984
No 196
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.79 E-value=3.6 Score=40.47 Aligned_cols=83 Identities=12% Similarity=0.214 Sum_probs=60.4
Q ss_pred HHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcc-cHHHHHHHHH
Q 015472 163 TFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELD-HINEARSIYK 241 (406)
Q Consensus 163 ~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g-~~~~ar~l~~ 241 (406)
.|..|+..+...+...+.++...-.-++....++ +++.||..|+++++..|++-++-...+.+-.+.. ..++.+.+|.
T Consensus 272 ~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~-e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDPNNVKALYRRGQALLALG-EYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444555655555666777788 8999999999999999999888888888766554 4556688999
Q ss_pred HHHhc
Q 015472 242 RCYSK 246 (406)
Q Consensus 242 ral~~ 246 (406)
+.+.+
T Consensus 351 ~mF~k 355 (397)
T KOG0543|consen 351 NMFAK 355 (397)
T ss_pred HHhhc
Confidence 88874
No 197
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=92.73 E-value=0.23 Score=46.93 Aligned_cols=63 Identities=17% Similarity=0.257 Sum_probs=53.6
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHH
Q 015472 34 QSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVR 97 (406)
Q Consensus 34 ~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~ 97 (406)
.+.|+.++|..+|+.|+...|.++++.+.|+.|.+.. ++.-.|..+|-+|+...|...+.-..
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~-~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMH-NEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhh-hhhHhhhhhhheeeeeCCCchHHHhh
Confidence 4579999999999999999999999999999999865 45667889999999999977654433
No 198
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.62 E-value=1.6 Score=36.34 Aligned_cols=88 Identities=17% Similarity=0.124 Sum_probs=70.2
Q ss_pred cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCCH---HHHHHHHHHHHHccCCHHH
Q 015472 36 SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC-PWVG---ELWVRSLLSLERSRASEEE 111 (406)
Q Consensus 36 ~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~-P~~~---~lW~~y~~~lE~~~~~~e~ 111 (406)
.|+++.+...|.++|..+|..+..+.+.+.-+.-.+ ..+.+..-+++|+..- |... ..+.+.+. +-+..++-+.
T Consensus 56 ~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~-~~e~ALdDLn~AleLag~~trtacqa~vQRg~-lyRl~g~dd~ 133 (175)
T KOG4555|consen 56 AGDLDGALELFGQALCLAPERASAYNNRAQALRLQG-DDEEALDDLNKALELAGDQTRTACQAFVQRGL-LYRLLGNDDA 133 (175)
T ss_pred ccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcC-ChHHHHHHHHHHHHhcCccchHHHHHHHHHHH-HHHHhCchHH
Confidence 489999999999999999999999999998776554 5788999999999865 4332 34444444 5566899999
Q ss_pred HHHHHHHHHhCccc
Q 015472 112 ISTVFEKSLLCAFS 125 (406)
Q Consensus 112 ar~if~~al~~~~~ 125 (406)
||.-|+.|-+.+.+
T Consensus 134 AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 134 ARADFEAAAQLGSK 147 (175)
T ss_pred HHHhHHHHHHhCCH
Confidence 99999999887654
No 199
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=92.43 E-value=18 Score=39.05 Aligned_cols=186 Identities=19% Similarity=0.169 Sum_probs=97.3
Q ss_pred hcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHH
Q 015472 35 SSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEIST 114 (406)
Q Consensus 35 ~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~ 114 (406)
..|-++.|..+|.+|-.. ++-.. ++... +..++|..+-+--=+. .-...+.+|+.+||. .++++.|.+
T Consensus 812 eLgMlEeA~~lYr~ckR~-----DLlNK---lyQs~-g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lea-r~Di~~Ale 879 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRY-----DLLNK---LYQSQ-GMWSEAFEIAETKDRI--HLRNTYYNYAKYLEA-RRDIEAALE 879 (1416)
T ss_pred HHhhHHHHHHHHHHHHHH-----HHHHH---HHHhc-ccHHHHHHHHhhccce--ehhhhHHHHHHHHHh-hccHHHHHH
Confidence 346677788888777432 22111 12211 2223333332211111 123578889988874 788999999
Q ss_pred HHHHHHhCcc----------ccHHHHH------HHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhh----
Q 015472 115 VFEKSLLCAF----------STFEEYL------DLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQ---- 174 (406)
Q Consensus 115 if~~al~~~~----------~~~~~~~------~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~---- 174 (406)
.|+++-...+ +.++.|+ .+|.-|..|+ +..++++.+...|..|.+++..-
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYl----------ES~GemdaAl~~Y~~A~D~fs~VrI~C 949 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYL----------ESVGEMDAALSFYSSAKDYFSMVRIKC 949 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHH----------hcccchHHHHHHHHHhhhhhhheeeEe
Confidence 9988754222 2233332 1222222222 33356667778888887765310
Q ss_pred ----------hcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH------hcc---chHHHH-----------HHHH
Q 015472 175 ----------MKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLK------ISG---AMLEAW-----------QSYI 224 (406)
Q Consensus 175 ----------~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~------~~~---~~~~lW-----------~~y~ 224 (406)
+.+...+...-...|+++...| ++.+|...|-+|-. .+. -.-.+| ..-+
T Consensus 950 ~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g-~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aA 1028 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEESGDKAACYHLARMYENDG-DVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAA 1028 (1416)
T ss_pred eccCchHHHHHHHhcccHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHH
Confidence 0000111112223566667778 88888888776543 221 112344 2334
Q ss_pred HHHHHc-ccHHHHHHHHHHH
Q 015472 225 SMEIEL-DHINEARSIYKRC 243 (406)
Q Consensus 225 ~~E~~~-g~~~~ar~l~~ra 243 (406)
.+.... |+.++|.-+|.+|
T Consensus 1029 rYyEe~g~~~~~AVmLYHkA 1048 (1416)
T KOG3617|consen 1029 RYYEELGGYAHKAVMLYHKA 1048 (1416)
T ss_pred HHHHHcchhhhHHHHHHHhh
Confidence 444444 5899999988775
No 200
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.42 E-value=2.3 Score=35.84 Aligned_cols=53 Identities=26% Similarity=0.354 Sum_probs=30.3
Q ss_pred hhHHHHHHHhcCCCCC-hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHH
Q 015472 4 ARAHLEEQISRQDLSD-SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD 58 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~-~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~ 58 (406)
+.+.||....+.|.+. ....++|+.|.-|. .|+++.+...|+|-|..+|.++.
T Consensus 29 A~~~le~L~~ryP~g~ya~qAqL~l~yayy~--~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 29 AIKQLEALDTRYPFGEYAEQAQLDLAYAYYK--QGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhCCCCCC
Confidence 4555666666665442 33445555555544 45666666666666666666654
No 201
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.16 E-value=10 Score=35.48 Aligned_cols=183 Identities=11% Similarity=0.108 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHH
Q 015472 59 LWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRI 138 (406)
Q Consensus 59 lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~ 138 (406)
.-..++.|+...+...+....+++.-....-.+..+|.-.+..+-.+.+++++|..+.+............++.+-+.+.
T Consensus 74 Avr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~ 153 (299)
T KOG3081|consen 74 AVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRF 153 (299)
T ss_pred HHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 44556666655443344556677766665555555666655444456788998887777632211100111111111121
Q ss_pred HHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHH
Q 015472 139 DGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE 218 (406)
Q Consensus 139 ~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~ 218 (406)
+. +.....+..+.-+ ....-.+-..|+.+-.--+ .+..|.-||+..-...|..+.
T Consensus 154 d~-------------------A~~~lk~mq~ide-----d~tLtQLA~awv~la~gge-k~qdAfyifeE~s~k~~~T~~ 208 (299)
T KOG3081|consen 154 DL-------------------AEKELKKMQQIDE-----DATLTQLAQAWVKLATGGE-KIQDAFYIFEELSEKTPPTPL 208 (299)
T ss_pred HH-------------------HHHHHHHHHccch-----HHHHHHHHHHHHHHhccch-hhhhHHHHHHHHhcccCCChH
Confidence 11 1111111111100 0011113333443333333 567777777777776655566
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCC
Q 015472 219 AWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGT 269 (406)
Q Consensus 219 lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~ 269 (406)
+-..-+-.-+.+|+++.|..+++.||.+. ..+|+.+.. -|..-...|-
T Consensus 209 llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~dpetL~N-liv~a~~~Gk 256 (299)
T KOG3081|consen 209 LLNGQAVCHLQLGRYEEAESLLEEALDKD--AKDPETLAN-LIVLALHLGK 256 (299)
T ss_pred HHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCCHHHHHH-HHHHHHHhCC
Confidence 66666666777778888888888887752 223443333 3444455554
No 202
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.14 E-value=1.7 Score=40.48 Aligned_cols=67 Identities=18% Similarity=0.156 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccch---HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCC
Q 015472 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM---LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTG 252 (406)
Q Consensus 182 ~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~---~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~ 252 (406)
...| +++.....| ++..|-.+|..+++.+|++ ++.-+..+......|+.+.|+..|+..++ .+|+..
T Consensus 180 A~yW--LGe~~y~qg-~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k-~YP~t~ 249 (262)
T COG1729 180 AYYW--LGESLYAQG-DYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK-RYPGTD 249 (262)
T ss_pred hHHH--HHHHHHhcc-cchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HCCCCH
Confidence 3455 355556677 8888999999999887654 57788888888888899999999999887 577653
No 203
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.02 E-value=2 Score=42.25 Aligned_cols=96 Identities=11% Similarity=-0.011 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015472 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER 104 (406)
Q Consensus 25 ~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~ 104 (406)
++++..-...+.+.+..|.....++|...|.|+..-..-+.-+... +..+.|+..|++|+...|.+..+-..++...+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~-~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLAL-GEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhh-ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3444444445556777788888888888888888777777666543 467778888888888888877777777764333
Q ss_pred ccCCHHHHHHHHHHHHh
Q 015472 105 SRASEEEISTVFEKSLL 121 (406)
Q Consensus 105 ~~~~~e~ar~if~~al~ 121 (406)
.....+.-+++|.+++.
T Consensus 338 ~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 33334445666766665
No 204
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.90 E-value=0.47 Score=28.71 Aligned_cols=31 Identities=13% Similarity=0.063 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 015472 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPV 55 (406)
Q Consensus 25 ~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~ 55 (406)
.|...+......|+++.++..|++++..+|.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 3445555555566666666666666666654
No 205
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.89 E-value=0.47 Score=28.84 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Q 015472 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGA 215 (406)
Q Consensus 183 ~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~ 215 (406)
++|...+.+...+| +++.|...|+++++..|+
T Consensus 2 ~~~~~lg~~y~~~~-~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLG-DYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCC
Confidence 35666677777777 777777777777777664
No 206
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.69 E-value=3.5 Score=34.38 Aligned_cols=79 Identities=15% Similarity=0.192 Sum_probs=66.1
Q ss_pred HHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHH---HHHHhCC
Q 015472 193 QSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLR---FEREYGT 269 (406)
Q Consensus 193 ~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~---fE~~~G~ 269 (406)
...| +++.|.+.|.+++..+|..+..+..-++-..-+|+.+.|..=+++|++. .++....-|++|++ +-+..|+
T Consensus 54 aE~g-~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL--ag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 54 AEAG-DLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL--AGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred Hhcc-chHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHHHHhCc
Confidence 4456 8999999999999999999999999999999999999999999999974 45556778888887 5667788
Q ss_pred HHHHH
Q 015472 270 LEDFD 274 (406)
Q Consensus 270 ~e~~~ 274 (406)
.+...
T Consensus 131 dd~AR 135 (175)
T KOG4555|consen 131 DDAAR 135 (175)
T ss_pred hHHHH
Confidence 76644
No 207
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=91.56 E-value=0.75 Score=33.99 Aligned_cols=57 Identities=18% Similarity=0.185 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcC-CchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Q 015472 155 LDYSLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS 213 (406)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~ 213 (406)
++++.+...|+++++.. ..++. .+.....+...+.+....| +++.|...|+++++..
T Consensus 19 ~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~lg~~~~~~g-~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 19 GRYDEALDYYEKALDIE-EQLGDDHPDTANTLNNLGECYYRLG-DYEEALEYYQKALDIF 76 (78)
T ss_dssp T-HHHHHHHHHHHHHHH-HHTTTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhh
Confidence 56778889999998874 33332 2233567778888899999 9999999999999864
No 208
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=91.49 E-value=15 Score=36.11 Aligned_cols=44 Identities=5% Similarity=-0.066 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 015472 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQ 65 (406)
Q Consensus 22 ~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~ 65 (406)
+......-.......|+...++.-...++...|.++.+-.--..
T Consensus 152 ~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r 195 (400)
T COG3071 152 TLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALR 195 (400)
T ss_pred hHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHH
Confidence 45566666777778899988998899999998988765443333
No 209
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.34 E-value=3 Score=38.92 Aligned_cols=107 Identities=13% Similarity=0.025 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCccc-cHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHh
Q 015472 94 LWVRSLLSLERSRASEEEISTVFEKSLLCAFS-TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLS 172 (406)
Q Consensus 94 lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~-~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~ 172 (406)
++..-+..+ ..+++..|...|..-++..|+ ..-.-..+|+..+-|-. +++..+-.+|..+++-++
T Consensus 144 ~Y~~A~~~~--ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~q------------g~y~~Aa~~f~~~~k~~P 209 (262)
T COG1729 144 LYNAALDLY--KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQ------------GDYEDAAYIFARVVKDYP 209 (262)
T ss_pred HHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhc------------ccchHHHHHHHHHHHhCC
Confidence 566655433 367899999999999997664 33334456665443321 455567777777766432
Q ss_pred hhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHH
Q 015472 173 EQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEA 219 (406)
Q Consensus 173 ~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~l 219 (406)
. ++...+...+.+.....++ +.+.|+.+|+.+++.+|+....
T Consensus 210 ~----s~KApdallKlg~~~~~l~-~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 210 K----SPKAPDALLKLGVSLGRLG-NTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred C----CCCChHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHCCCCHHH
Confidence 2 3444567778888888999 8999999999999999986543
No 210
>PRK04841 transcriptional regulator MalT; Provisional
Probab=91.16 E-value=28 Score=38.55 Aligned_cols=198 Identities=13% Similarity=0.009 Sum_probs=113.1
Q ss_pred HhcCChhHHHHHHHHHHhcCCC-----CHHHH--HH-HHHHHHHhcchhhhHHHHHHHHHHhCCCCH-----HHHHHHHH
Q 015472 34 QSSGDPGRVQLLYERAITDFPV-----SSDLW--LD-YTQYLDKTLKVGNVVRDVYSRATKNCPWVG-----ELWVRSLL 100 (406)
Q Consensus 34 ~~~g~~~~~~~lyEral~~~P~-----~~~lW--~~-Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~-----~lW~~y~~ 100 (406)
...|+++.+..+++++....+. ...+. .. ...++....+..+.+...+++|+...|... ..+...+.
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 3457888888888887665332 11111 11 111121123467889999999988655422 12222222
Q ss_pred HHHHccCCHHHHHHHHHHHHhCccc--c--HHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhc
Q 015472 101 SLERSRASEEEISTVFEKSLLCAFS--T--FEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMK 176 (406)
Q Consensus 101 ~lE~~~~~~e~ar~if~~al~~~~~--~--~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~ 176 (406)
.....|+++.++..|++++..... . ...+....+..+.. ..+++..+...+++++........
T Consensus 500 -~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~------------~~G~~~~A~~~~~~al~~~~~~~~ 566 (903)
T PRK04841 500 -VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF------------AQGFLQAAYETQEKAFQLIEEQHL 566 (903)
T ss_pred -HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH------------HCCCHHHHHHHHHHHHHHHHHhcc
Confidence 223478899999999998863211 1 11111111111100 114566777778887776533211
Q ss_pred C-CchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc----c-hHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 015472 177 N-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG----A-MLEAWQSYISMEIELDHINEARSIYKRCYS 245 (406)
Q Consensus 177 ~-~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~----~-~~~lW~~y~~~E~~~g~~~~ar~l~~ral~ 245 (406)
. .+....++...+.+....| +++.|+..+..++.... . ....+...+......|+++.|...+.++..
T Consensus 567 ~~~~~~~~~~~~la~~~~~~G-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 567 EQLPMHEFLLRIRAQLLWEWA-RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred ccccHHHHHHHHHHHHHHHhc-CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 1111223445566777788 99999999999988632 1 233444556677788999999999999865
No 211
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=90.77 E-value=14 Score=34.28 Aligned_cols=55 Identities=25% Similarity=0.292 Sum_probs=41.5
Q ss_pred hhhHHHHHHHhcCCCCC-hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHH
Q 015472 3 NARAHLEEQISRQDLSD-SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDL 59 (406)
Q Consensus 3 ~~R~~yE~~L~~~~~~~-~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~l 59 (406)
.+...||..+...|.+. ......|+.|+-+. .|+++.+...|++.+..+|.++.+
T Consensus 50 ~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~--~~~y~~A~~~~e~fi~~~P~~~~~ 105 (243)
T PRK10866 50 QAITQLEALDNRYPFGPYSQQVQLDLIYAYYK--NADLPLAQAAIDRFIRLNPTHPNI 105 (243)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhCcCCCch
Confidence 36778999999888542 12233566666554 689999999999999999998765
No 212
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=90.75 E-value=18 Score=35.62 Aligned_cols=232 Identities=15% Similarity=0.067 Sum_probs=120.2
Q ss_pred HHhcCChhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHH
Q 015472 33 EQSSGDPGRVQLLYERAITDFPV-SSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEE 111 (406)
Q Consensus 33 E~~~g~~~~~~~lyEral~~~P~-~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ 111 (406)
-...|+.+++-....++-+.-+. ....-+..+..+...+ +...++.-.+.+....|....+-.-....+ ...++...
T Consensus 128 A~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~-d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y-~~~g~~~~ 205 (400)
T COG3071 128 AQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR-DYPAARENVDQLLEMTPRHPEVLRLALRAY-IRLGAWQA 205 (400)
T ss_pred HHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC-CchhHHHHHHHHHHhCcCChHHHHHHHHHH-HHhccHHH
Confidence 34457777777777777766222 2233444444444333 456677777888877777665444333322 24566666
Q ss_pred HHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchh----hhh--------HHHH---------HHHHHHHHHH
Q 015472 112 ISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEG----VLD--------YSLI---------RETFQRASDY 170 (406)
Q Consensus 112 ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~----~~~--------~~~~---------r~~f~~a~~~ 170 (406)
+-.+..+.-+.+--+-.++..+...-+..+-+........+. +.+ .... ....+.|.+.
T Consensus 206 ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~ 285 (400)
T COG3071 206 LLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEI 285 (400)
T ss_pred HHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHH
Confidence 666666655543322233333332222211111111110010 000 0000 0111222222
Q ss_pred HhhhhcC-CchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccC
Q 015472 171 LSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFT 249 (406)
Q Consensus 171 l~~~~~~-~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~ 249 (406)
+...++. .++. +...+.. ...+ |+..-.+..+..++.+|+++.+|.....+..+++.+.+|...|+.|+...
T Consensus 286 i~~~Lk~~~D~~--L~~~~~~--l~~~-d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~-- 358 (400)
T COG3071 286 IEDALKRQWDPR--LCRLIPR--LRPG-DPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR-- 358 (400)
T ss_pred HHHHHHhccChh--HHHHHhh--cCCC-CchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC--
Confidence 2222211 1221 2222221 1233 67777788888888899999999999999999999999999999999742
Q ss_pred CCChHHHHHHHHHHHHHhCCHHHHHH
Q 015472 250 GTGSEDICHAWLRFEREYGTLEDFDH 275 (406)
Q Consensus 250 ~~~~~~i~~~~i~fE~~~G~~e~~~~ 275 (406)
.+...-.|.++ .|+. .|.++..+.
T Consensus 359 ~s~~~~~~la~-~~~~-~g~~~~A~~ 382 (400)
T COG3071 359 PSASDYAELAD-ALDQ-LGEPEEAEQ 382 (400)
T ss_pred CChhhHHHHHH-HHHH-cCChHHHHH
Confidence 33222233332 2443 477666554
No 213
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=90.65 E-value=0.89 Score=43.11 Aligned_cols=52 Identities=15% Similarity=0.146 Sum_probs=48.4
Q ss_pred HcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 194 SMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 194 ~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
..| +.++|..+|+.|+...|+++++.+.|..|-...+++-.|-.+|-+||..
T Consensus 128 ~~G-k~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 128 KDG-KLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred hcc-chHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 456 8999999999999999999999999999988889999999999999974
No 214
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.64 E-value=0.86 Score=27.69 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Q 015472 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGA 215 (406)
Q Consensus 184 l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~ 215 (406)
+|...+.....++ +++.|...|+++++.+|+
T Consensus 3 ~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLG-DYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhC-CchHHHHHHHHHHHHCcC
Confidence 4555666666667 777777777777777765
No 215
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.51 E-value=24 Score=36.65 Aligned_cols=68 Identities=18% Similarity=0.080 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc------c----hH----H-HHHHHHHHHHHcccHHHHHHHHHHHH
Q 015472 180 GLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG------A----ML----E-AWQSYISMEIELDHINEARSIYKRCY 244 (406)
Q Consensus 180 ~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~------~----~~----~-lW~~y~~~E~~~g~~~~ar~l~~ral 244 (406)
+.+++.-+-|-.+...| ++..|.++++.++..+- + .. . +-...+-.....|....|.++|...+
T Consensus 173 ~syel~yN~Ac~~i~~g-ky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 173 DSYELLYNTACILIENG-KYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred chHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 35667777777778888 89999999999966531 1 11 1 22222222456699999999999999
Q ss_pred hccc
Q 015472 245 SKRF 248 (406)
Q Consensus 245 ~~~~ 248 (406)
....
T Consensus 252 ~~~~ 255 (652)
T KOG2376|consen 252 KRNP 255 (652)
T ss_pred HhcC
Confidence 8643
No 216
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=89.20 E-value=13 Score=31.59 Aligned_cols=193 Identities=18% Similarity=0.076 Sum_probs=90.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 015472 30 LKYEQSSGDPGRVQLLYERAIT--DFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRA 107 (406)
Q Consensus 30 i~~E~~~g~~~~~~~lyEral~--~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~ 107 (406)
.......|....+...+..++. ..+.....+...+.+..... ....+..++..++...+.....+...........+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (291)
T COG0457 66 ALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALG-KYEEALELLEKALALDPDPDLAEALLALGALYELG 144 (291)
T ss_pred HHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHh-hHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcC
Confidence 3333444556666666666665 45555566655555544322 34556666666666554432222222210112356
Q ss_pred CHHHHHHHHHHHHhCccc--c-HHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCch-HHH
Q 015472 108 SEEEISTVFEKSLLCAFS--T-FEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDG-LLR 183 (406)
Q Consensus 108 ~~e~ar~if~~al~~~~~--~-~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~-~~~ 183 (406)
.++.+...|.+++...+. . ...+...... . ....++..+...+.+++... +. ...
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----------~~~~~~~~a~~~~~~~~~~~-------~~~~~~ 203 (291)
T COG0457 145 DYEEALELYEKALELDPELNELAEALLALGAL----L----------EALGRYEEALELLEKALKLN-------PDDDAE 203 (291)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHhhhH----H----------HHhcCHHHHHHHHHHHHhhC-------cccchH
Confidence 666666777666553321 0 0001000000 0 00012223333344433322 11 223
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 015472 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (406)
Q Consensus 184 l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~ 245 (406)
.+...+......+ ++..|...+..++...|.....+..........|....+...+.+++.
T Consensus 204 ~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 204 ALLNLGLLYLKLG-KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHhhHHHHHcc-cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444445555 566777777777777665333333333332255566777777777665
No 217
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=88.45 E-value=15 Score=32.81 Aligned_cols=92 Identities=14% Similarity=0.081 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchH-----HHHHHHHHHHHH
Q 015472 155 LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAML-----EAWQSYISMEIE 229 (406)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~-----~lW~~y~~~E~~ 229 (406)
+++..+...|+..+...+. .+-........+......| ++..|+..|++.+..+|+++ -+++..+.+...
T Consensus 19 g~y~~Ai~~f~~l~~~~P~----s~~a~~A~l~la~a~y~~~-~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~ 93 (203)
T PF13525_consen 19 GDYEEAIKLFEKLIDRYPN----SPYAPQAQLMLAYAYYKQG-DYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQI 93 (203)
T ss_dssp T-HHHHHHHHHHHHHH-TT----STTHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCC----ChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhC
Confidence 4556677777776654321 1212233444455556778 99999999999999988754 234444433322
Q ss_pred ---------cccHHHHHHHHHHHHhcccCCCC
Q 015472 230 ---------LDHINEARSIYKRCYSKRFTGTG 252 (406)
Q Consensus 230 ---------~g~~~~ar~l~~ral~~~~~~~~ 252 (406)
.+....|...|+..+. .+|.+.
T Consensus 94 ~~~~~~~~D~~~~~~A~~~~~~li~-~yP~S~ 124 (203)
T PF13525_consen 94 PGILRSDRDQTSTRKAIEEFEELIK-RYPNSE 124 (203)
T ss_dssp HHHH-TT---HHHHHHHHHHHHHHH-H-TTST
T ss_pred ccchhcccChHHHHHHHHHHHHHHH-HCcCch
Confidence 2345677888888887 577654
No 218
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.44 E-value=0.98 Score=26.96 Aligned_cols=28 Identities=25% Similarity=0.218 Sum_probs=17.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccch
Q 015472 188 WAHLEQSMGKDMVSARGVWERLLKISGAM 216 (406)
Q Consensus 188 ~a~~e~~~~~d~~~Ar~ife~al~~~~~~ 216 (406)
.|......| +++.|+.+|++++..+|++
T Consensus 6 ~a~~~~~~g-~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 6 LARCYYKLG-DYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHC-HHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHcc-CHHHHHHHHHHHHHHCcCC
Confidence 344444556 6777777777777777653
No 219
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.34 E-value=1 Score=27.35 Aligned_cols=31 Identities=23% Similarity=0.116 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 015472 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPV 55 (406)
Q Consensus 25 ~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~ 55 (406)
.|..-+......|+++.+...|++||..+|.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 3444444445555556666666666655553
No 220
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.07 E-value=5.5 Score=35.72 Aligned_cols=90 Identities=21% Similarity=0.144 Sum_probs=55.2
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCC
Q 015472 34 QSSGDPGRVQLLYERAITDFPVSSD-----LWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRAS 108 (406)
Q Consensus 34 ~~~g~~~~~~~lyEral~~~P~~~~-----lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~ 108 (406)
..+|+++.|..-|.+||..||..+. ++.+.+..+.+.. ..+.+..-+.+|+...|.........+..++. ...
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~-k~e~aI~dcsKaiel~pty~kAl~RRAeayek-~ek 183 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLR-KWESAIEDCSKAIELNPTYEKALERRAEAYEK-MEK 183 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhh-hHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh-hhh
Confidence 3457899999999999999997554 2333333222222 34556666677776666554444443433332 355
Q ss_pred HHHHHHHHHHHHhCccc
Q 015472 109 EEEISTVFEKSLLCAFS 125 (406)
Q Consensus 109 ~e~ar~if~~al~~~~~ 125 (406)
++.+..-|.+.+...|.
T Consensus 184 ~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 184 YEEALEDYKKILESDPS 200 (271)
T ss_pred HHHHHHHHHHHHHhCcc
Confidence 77777777777776664
No 221
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=87.97 E-value=19 Score=32.06 Aligned_cols=135 Identities=13% Similarity=0.197 Sum_probs=83.7
Q ss_pred cCCHHHHHHHHHHHHhCccc-cHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHH
Q 015472 106 RASEEEISTVFEKSLLCAFS-TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRL 184 (406)
Q Consensus 106 ~~~~e~ar~if~~al~~~~~-~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l 184 (406)
.|+..+++..|+.++.-.+. ....++.+-...+ ...+...+..+.+...++- +.+.. .+-
T Consensus 102 lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf--------------a~~~~A~a~~tLe~l~e~~-pa~r~----pd~ 162 (251)
T COG4700 102 LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQF--------------AIQEFAAAQQTLEDLMEYN-PAFRS----PDG 162 (251)
T ss_pred hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHH--------------hhccHHHHHHHHHHHhhcC-CccCC----CCc
Confidence 68999999999999986653 3333333222111 0122333444444444432 22222 223
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHH----HHHHHHHHhcccCCCChHHHHHHH
Q 015472 185 YAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEA----RSIYKRCYSKRFTGTGSEDICHAW 260 (406)
Q Consensus 185 ~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~a----r~l~~ral~~~~~~~~~~~i~~~~ 260 (406)
...|++.+...| .+..|+..|+.++...|+ +..-+.|..|..++|....+ +.+++++.... + --..=-..|
T Consensus 163 ~Ll~aR~laa~g-~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~-~--H~rkh~reW 237 (251)
T COG4700 163 HLLFARTLAAQG-KYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSR-P--HYRKHHREW 237 (251)
T ss_pred hHHHHHHHHhcC-CchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc-h--hHHHHHHHH
Confidence 456888888888 899999999999999886 66678899999999966654 45666666531 1 112334556
Q ss_pred HHHH
Q 015472 261 LRFE 264 (406)
Q Consensus 261 i~fE 264 (406)
++|-
T Consensus 238 ~~~A 241 (251)
T COG4700 238 IKTA 241 (251)
T ss_pred HHHH
Confidence 6653
No 222
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=86.02 E-value=12 Score=38.00 Aligned_cols=138 Identities=12% Similarity=0.106 Sum_probs=86.6
Q ss_pred hhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccch
Q 015472 73 VGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVE 152 (406)
Q Consensus 73 ~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e 152 (406)
++..-.+.-.+|+..+|.+...|+-.+ |....++.++..+|++|++.+....- +..
T Consensus 183 np~aRIkaA~eALei~pdCAdAYILLA---EEeA~Ti~Eae~l~rqAvkAgE~~lg---------------~s~------ 238 (539)
T PF04184_consen 183 NPQARIKAAKEALEINPDCADAYILLA---EEEASTIVEAEELLRQAVKAGEASLG---------------KSQ------ 238 (539)
T ss_pred CHHHHHHHHHHHHHhhhhhhHHHhhcc---cccccCHHHHHHHHHHHHHHHHHhhc---------------hhh------
Confidence 445566777889999999988876654 33467789999999999986532100 000
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHc
Q 015472 153 GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA--MLEAWQSYISMEIEL 230 (406)
Q Consensus 153 ~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~--~~~lW~~y~~~E~~~ 230 (406)
....+....+..... .....+.+-..+|....++| ....|.+.|...++.+|. +..+.-..++.....
T Consensus 239 -------~~~~~g~~~e~~~~R--dt~~~~y~KrRLAmCarklG-r~~EAIk~~rdLlke~p~~~~l~IrenLie~LLel 308 (539)
T PF04184_consen 239 -------FLQHHGHFWEAWHRR--DTNVLVYAKRRLAMCARKLG-RLREAIKMFRDLLKEFPNLDNLNIRENLIEALLEL 308 (539)
T ss_pred -------hhhcccchhhhhhcc--ccchhhhhHHHHHHHHHHhC-ChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhc
Confidence 000000000000000 00011112223444456788 899999999999988663 567888999999999
Q ss_pred ccHHHHHHHHHHHH
Q 015472 231 DHINEARSIYKRCY 244 (406)
Q Consensus 231 g~~~~ar~l~~ral 244 (406)
+.+..+..++.+-=
T Consensus 309 q~Yad~q~lL~kYd 322 (539)
T PF04184_consen 309 QAYADVQALLAKYD 322 (539)
T ss_pred CCHHHHHHHHHHhc
Confidence 99999999988854
No 223
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=85.60 E-value=29 Score=31.73 Aligned_cols=71 Identities=24% Similarity=0.237 Sum_probs=56.2
Q ss_pred ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHH
Q 015472 38 DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFE 117 (406)
Q Consensus 38 ~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~ 117 (406)
+-+||..+|||.+-- .|..+| ..|+.-|..|+...|.-++++.-...++ ...++++.+-+.|.
T Consensus 61 ~eeRA~l~fERGvlY--DSlGL~--------------~LAR~DftQaLai~P~m~~vfNyLG~Yl-~~a~~fdaa~eaFd 123 (297)
T COG4785 61 DEERAQLLFERGVLY--DSLGLR--------------ALARNDFSQALAIRPDMPEVFNYLGIYL-TQAGNFDAAYEAFD 123 (297)
T ss_pred hHHHHHHHHHhcchh--hhhhHH--------------HHHhhhhhhhhhcCCCcHHHHHHHHHHH-HhcccchHHHHHhh
Confidence 557899999999854 344444 4467788899999999999887777655 35799999999999
Q ss_pred HHHhCccc
Q 015472 118 KSLLCAFS 125 (406)
Q Consensus 118 ~al~~~~~ 125 (406)
..++..|.
T Consensus 124 s~~ELDp~ 131 (297)
T COG4785 124 SVLELDPT 131 (297)
T ss_pred hHhccCCc
Confidence 99987764
No 224
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=84.72 E-value=5.2 Score=36.79 Aligned_cols=81 Identities=19% Similarity=0.045 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHH
Q 015472 39 PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEK 118 (406)
Q Consensus 39 ~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~ 118 (406)
+..+...|-|||..+|+.+..|.+-+....+ .++.+.+..-..||+...|++..--......+ .....++++-.++.+
T Consensus 26 y~~ai~~y~raI~~nP~~~~Y~tnralchlk-~~~~~~v~~dcrralql~~N~vk~h~flg~~~-l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 26 YDDAIDCYSRAICINPTVASYYTNRALCHLK-LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL-LQSKGYDEAIKVLQR 103 (284)
T ss_pred hchHHHHHHHHHhcCCCcchhhhhHHHHHHH-hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH-HhhccccHHHHHHHH
Confidence 4668889999999999999999998865554 45778899999999999998765444444333 235678889999999
Q ss_pred HHh
Q 015472 119 SLL 121 (406)
Q Consensus 119 al~ 121 (406)
|..
T Consensus 104 a~s 106 (284)
T KOG4642|consen 104 AYS 106 (284)
T ss_pred HHH
Confidence 965
No 225
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.62 E-value=1.8 Score=25.77 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=12.9
Q ss_pred cCChhHHHHHHHHHHhcCCCC
Q 015472 36 SGDPGRVQLLYERAITDFPVS 56 (406)
Q Consensus 36 ~g~~~~~~~lyEral~~~P~~ 56 (406)
.|+.+.+...|++.+..+|.|
T Consensus 13 ~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 13 LGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HCHHHHHHHHHHHHHHHSTTS
T ss_pred ccCHHHHHHHHHHHHHHCcCC
Confidence 456666666666666666653
No 226
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=84.34 E-value=2.4 Score=26.39 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=16.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 015472 185 YAYWAHLEQSMGKDMVSARGVWERLLKI 212 (406)
Q Consensus 185 ~~~~a~~e~~~~~d~~~Ar~ife~al~~ 212 (406)
|...+.+....| ++++|..+|++++..
T Consensus 2 l~~Lg~~~~~~g-~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQG-DYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 345566666677 777777777775543
No 227
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.05 E-value=2.5 Score=25.49 Aligned_cols=30 Identities=23% Similarity=0.227 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 015472 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFP 54 (406)
Q Consensus 25 ~w~~Yi~~E~~~g~~~~~~~lyEral~~~P 54 (406)
+|...+......|+++.+...|++|+..+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 466666666677777777777777777766
No 228
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.08 E-value=6.7 Score=34.45 Aligned_cols=63 Identities=13% Similarity=0.088 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 015472 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKISG---AMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (406)
Q Consensus 182 ~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~---~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~ 245 (406)
-..+...+.+....| |.+.|.+.|.++...+. ...++|+..+..-+..|++..+.....+|-.
T Consensus 36 r~~~~~l~~~~~~~G-d~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 36 RMALEDLADHYCKIG-DLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHhh-hHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 346778888999999 99999999999888753 3468999999999999999999999999876
No 229
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=81.01 E-value=91 Score=34.14 Aligned_cols=74 Identities=20% Similarity=0.238 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHH
Q 015472 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLL 100 (406)
Q Consensus 23 ~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~ 100 (406)
..+...+.-+- .|..+.+..+.| ++..-+.+.++=++.+.++-+..+..+++..+|+||+..+|. .++-..|..
T Consensus 45 a~vLkaLsl~r--~gk~~ea~~~Le-~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFm 118 (932)
T KOG2053|consen 45 AKVLKALSLFR--LGKGDEALKLLE-ALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFM 118 (932)
T ss_pred HHHHHHHHHHH--hcCchhHHHHHh-hhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHH
Confidence 34555555433 455555554444 444445556666777766655556778999999999999998 554444443
No 230
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=80.82 E-value=3.4 Score=25.68 Aligned_cols=26 Identities=8% Similarity=0.095 Sum_probs=22.2
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHh
Q 015472 220 WQSYISMEIELDHINEARSIYKRCYS 245 (406)
Q Consensus 220 W~~y~~~E~~~g~~~~ar~l~~ral~ 245 (406)
|...+.+....|++++|..+|+++|.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67788889999999999999999774
No 231
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=78.92 E-value=50 Score=29.84 Aligned_cols=97 Identities=15% Similarity=0.133 Sum_probs=52.0
Q ss_pred ccCCHHHHHHHHHHHHhCccccHHHHHHHH-HHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHH
Q 015472 105 SRASEEEISTVFEKSLLCAFSTFEEYLDLF-LTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLR 183 (406)
Q Consensus 105 ~~~~~e~ar~if~~al~~~~~~~~~~~~l~-~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~ 183 (406)
.+|++++|..-|..||...|+.......+. ..+... + +. ....+.+++-+.+++..+|+...
T Consensus 107 ~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa---~----------iK----l~k~e~aI~dcsKaiel~pty~k 169 (271)
T KOG4234|consen 107 KNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAA---L----------IK----LRKWESAIEDCSKAIELNPTYEK 169 (271)
T ss_pred hcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHH---H----------HH----hhhHHHHHHHHHhhHhcCchhHH
Confidence 368899999999999986654322222221 111100 0 00 11223333333344433454444
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHH
Q 015472 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEA 219 (406)
Q Consensus 184 l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~l 219 (406)
....-|.++.... .++.|..-|.+.+..+|..-.+
T Consensus 170 Al~RRAeayek~e-k~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 170 ALERRAEAYEKME-KYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred HHHHHHHHHHhhh-hHHHHHHHHHHHHHhCcchHHH
Confidence 4444455555555 6888888888888888865433
No 232
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=78.91 E-value=8.9 Score=33.67 Aligned_cols=63 Identities=16% Similarity=0.236 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhh
Q 015472 218 EAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (406)
Q Consensus 218 ~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~a~~k~ 280 (406)
..|...++|..+.|+.+.|...|.++............+|-.+|..--.+|+...+..-+.+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 467888999999999999999999998853333334577888888888899988877666554
No 233
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=78.31 E-value=65 Score=30.86 Aligned_cols=48 Identities=13% Similarity=0.203 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHc------CCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHc
Q 015472 182 LRLYAYWAHLEQSM------GKDMVSARGVWERLLKISGAMLEAWQSYISMEIEL 230 (406)
Q Consensus 182 ~~l~~~~a~~e~~~------~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~ 230 (406)
..++..++++.... + +.+.+...|..++..+|.....|..++.+....
T Consensus 252 a~~~l~~a~w~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 252 AKAFLLLAKWLDELYSKLSSE-SSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHHHHHHhhccccccc-cHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 35666777776666 5 789999999999999999999999998886554
No 234
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=77.38 E-value=5.1 Score=26.12 Aligned_cols=33 Identities=12% Similarity=-0.117 Sum_probs=28.2
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHcccHHHH
Q 015472 204 GVWERLLKISGAMLEAWQSYISMEIELDHINEA 236 (406)
Q Consensus 204 ~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~a 236 (406)
..|.++|-.+|+.-..++.|++|...+|+..++
T Consensus 3 ~all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 3 EALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 357788888999999999999999999988654
No 235
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=76.86 E-value=4.7 Score=26.28 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=15.0
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 015472 45 LYERAITDFPVSSDLWLDYTQYLDKTL 71 (406)
Q Consensus 45 lyEral~~~P~~~~lW~~Y~~~l~~~~ 71 (406)
.|.+||..+|.+...|+-|+.+|..++
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~g 30 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHG 30 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcC
Confidence 345555555655555666666555443
No 236
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=76.78 E-value=0.71 Score=37.88 Aligned_cols=18 Identities=17% Similarity=0.626 Sum_probs=14.8
Q ss_pred CCCccceeeecccccccC
Q 015472 388 FTDECTAFLSNINLKASH 405 (406)
Q Consensus 388 ~~~~~~~f~~n~~~~~~~ 405 (406)
...+|||||+|||+-.+|
T Consensus 33 ~r~S~tvyVgNlSfyttE 50 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTE 50 (153)
T ss_pred HhhcceEEEeeeeeeecH
Confidence 456789999999997765
No 237
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=76.66 E-value=5.2 Score=22.33 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=14.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Q 015472 186 AYWAHLEQSMGKDMVSARGVWERLLKISG 214 (406)
Q Consensus 186 ~~~a~~e~~~~~d~~~Ar~ife~al~~~~ 214 (406)
..++......+ +++.|...|..+++..|
T Consensus 5 ~~~a~~~~~~~-~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 5 YNLGNAYLKLG-DYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHh-hHHHHHHHHHHHHccCC
Confidence 33444444445 55555555555555444
No 238
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=76.57 E-value=9.4 Score=37.00 Aligned_cols=88 Identities=16% Similarity=0.098 Sum_probs=61.4
Q ss_pred hcCChhHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHH
Q 015472 35 SSGDPGRVQLLYERAITDFPVSSDLWLDYTQ-YLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEIS 113 (406)
Q Consensus 35 ~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~-~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar 113 (406)
++|.++.|..+|.+++...|.++-+..+.+. |+.. +.+..|..-++-|+...-.....+...+. .....|...+|.
T Consensus 109 KQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~--K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~-AR~~Lg~~~EAK 185 (536)
T KOG4648|consen 109 KQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQ--KSFAQAEEDCEAAIALDKLYVKAYSRRMQ-ARESLGNNMEAK 185 (536)
T ss_pred hccchhHHHHHhhhhhccCCCCccchhhHHHHHHHH--HHHHHHHHhHHHHHHhhHHHHHHHHHHHH-HHHHHhhHHHHH
Confidence 4577899999999999999999888877664 4432 34555666667776654433444444443 223367788899
Q ss_pred HHHHHHHhCccc
Q 015472 114 TVFEKSLLCAFS 125 (406)
Q Consensus 114 ~if~~al~~~~~ 125 (406)
.-++++|...|.
T Consensus 186 kD~E~vL~LEP~ 197 (536)
T KOG4648|consen 186 KDCETVLALEPK 197 (536)
T ss_pred HhHHHHHhhCcc
Confidence 999999988775
No 239
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=75.76 E-value=99 Score=31.66 Aligned_cols=85 Identities=19% Similarity=0.096 Sum_probs=55.8
Q ss_pred CChhHHHHHHHHHHhcCCC-CHH------HHHHHHH-HHHH--hcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 015472 37 GDPGRVQLLYERAITDFPV-SSD------LWLDYTQ-YLDK--TLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSR 106 (406)
Q Consensus 37 g~~~~~~~lyEral~~~P~-~~~------lW~~Y~~-~l~~--~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~ 106 (406)
||.+....+..+|....-. ++- .+...+. |+.. ...+.+.+..+.+......|.+ .+|.-+.--+++..
T Consensus 202 gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s-~lfl~~~gR~~~~~ 280 (468)
T PF10300_consen 202 GDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNS-ALFLFFEGRLERLK 280 (468)
T ss_pred CcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHh
Confidence 6778888888888764211 111 1222222 1111 1224467899999999999975 56655554477778
Q ss_pred CCHHHHHHHHHHHHhC
Q 015472 107 ASEEEISTVFEKSLLC 122 (406)
Q Consensus 107 ~~~e~ar~if~~al~~ 122 (406)
++.++|...|++|+..
T Consensus 281 g~~~~Ai~~~~~a~~~ 296 (468)
T PF10300_consen 281 GNLEEAIESFERAIES 296 (468)
T ss_pred cCHHHHHHHHHHhccc
Confidence 9999999999999964
No 240
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=75.55 E-value=2e+02 Score=35.17 Aligned_cols=232 Identities=13% Similarity=0.034 Sum_probs=127.6
Q ss_pred hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhC-CC--------
Q 015472 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC-PW-------- 90 (406)
Q Consensus 20 ~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~-P~-------- 90 (406)
..-...|..++.+.+..|.+++|....=.|.... -+.+-+..+++++..+ +...|..+.+..+..+ |.
T Consensus 1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~g-d~~~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTG-DELNALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhc-cHHHHHHHHHHHHHhhcccccCCcccc
Confidence 3456799999999999999999988877777664 6788899999999876 5677999999999644 43
Q ss_pred --C------HHHHHHHHHHHHHc-cCCHHHHHHHHHHHHhCccc--cHHHHHHHHHHHHHHHHHHHhccccchhhhhHHH
Q 015472 91 --V------GELWVRSLLSLERS-RASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSL 159 (406)
Q Consensus 91 --~------~~lW~~y~~~lE~~-~~~~e~ar~if~~al~~~~~--~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~ 159 (406)
+ ...-..+..+++.. +-.-..+...|+.+..+.+. +-.-++..|... .+-++..... +..+++..
T Consensus 1744 p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~k--ll~~~~~~~~--E~~g~~~~ 1819 (2382)
T KOG0890|consen 1744 PQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDK--LLEDYKSNKM--EKSGRVLS 1819 (2382)
T ss_pred chhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHH--Hhhhhhcccc--cccccHHH
Confidence 1 11233333444432 22245688899999887552 111112211110 1111111111 11122211
Q ss_pred ---HHHHHHHHHHHHhhhh-cCCchHHHHHHHHHHHHH----------HcCCCHHHHHHHHHHHHHhccchHHHHHHHHH
Q 015472 160 ---IRETFQRASDYLSEQM-KNTDGLLRLYAYWAHLEQ----------SMGKDMVSARGVWERLLKISGAMLEAWQSYIS 225 (406)
Q Consensus 160 ---~r~~f~~a~~~l~~~~-~~~~~~~~l~~~~a~~e~----------~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~ 225 (406)
+..-|.+++.+-...+ ...|..+.+|.-++-.-. ..+ ++...-.+-+.++...|. +.+...|.+
T Consensus 1820 ~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~~ek~~r~ei~s~-~~~~in~~i~~~~~~lp~-Y~f~ta~sQ 1897 (2382)
T KOG0890|consen 1820 LLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISSVEKAPRGEIVSK-NLKLINSLIEEALEHLPT-YQFYTAYSQ 1897 (2382)
T ss_pred HHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcccccCChhhhhhh-hHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 2223355555432222 124666778887543211 112 344445566666666664 556677888
Q ss_pred HHHHc-ccHHHHHHHHHHHHhc---ccCCCChHHHHHHHHHH
Q 015472 226 MEIEL-DHINEARSIYKRCYSK---RFTGTGSEDICHAWLRF 263 (406)
Q Consensus 226 ~E~~~-g~~~~ar~l~~ral~~---~~~~~~~~~i~~~~i~f 263 (406)
+..+. ..-+.+-.++.+.+.+ .+| ...+|+--.-+
T Consensus 1898 LlSRicH~~~dV~~vl~~II~~l~~~YP---qq~lW~~~a~~ 1936 (2382)
T KOG0890|consen 1898 LLSRICHPNQDVARVLKHIIAKLVLAYP---QQTLWQSAALS 1936 (2382)
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHhCc---hHHHHHHHHHH
Confidence 87664 2223333333333322 344 35677765444
No 241
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=75.41 E-value=6 Score=22.03 Aligned_cols=30 Identities=20% Similarity=0.062 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 015472 26 YMIYLKYEQSSGDPGRVQLLYERAITDFPV 55 (406)
Q Consensus 26 w~~Yi~~E~~~g~~~~~~~lyEral~~~P~ 55 (406)
|...+......|+++.+...|++++...|.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 444455555556666666666666666553
No 242
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=75.21 E-value=32 Score=38.37 Aligned_cols=71 Identities=10% Similarity=0.178 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCH
Q 015472 198 DMVSARGVWERLLKI--SGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTL 270 (406)
Q Consensus 198 d~~~Ar~ife~al~~--~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~ 270 (406)
....++.+|..+... .+...-++..|+.++...+.+.+|..+|+.+++... .....+-+++..|...+|--
T Consensus 93 ~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~a--eP~~rL~~~~~~F~~r~~r~ 165 (974)
T KOG1166|consen 93 ELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKA--EPLERLLRQYSNFQQRLMRQ 165 (974)
T ss_pred HHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCHHHHHHHHHHHHHHHhhh
Confidence 466788888888876 344566888898888888999999999999998642 23678888999998887754
No 243
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=71.73 E-value=31 Score=31.90 Aligned_cols=67 Identities=15% Similarity=0.151 Sum_probs=52.7
Q ss_pred CchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 015472 178 TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (406)
Q Consensus 178 ~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~ 245 (406)
+|.....|.+=|.-..... +++.+..--.+++...|+.+.-......+......++.|..++.||.+
T Consensus 40 nP~~~~Y~tnralchlk~~-~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 40 NPTVASYYTNRALCHLKLK-HWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYS 106 (284)
T ss_pred CCCcchhhhhHHHHHHHhh-hhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 4555566776666556666 788888888899999999888777777777888899999999999954
No 244
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=71.36 E-value=76 Score=28.37 Aligned_cols=112 Identities=12% Similarity=0.057 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCC--CHHHHHHHH
Q 015472 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITD-FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPW--VGELWVRSL 99 (406)
Q Consensus 23 ~~~w~~Yi~~E~~~g~~~~~~~lyEral~~-~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~--~~~lW~~y~ 99 (406)
.+.-.....-....|+..+++..|+.++.- +..+..+-+..+.-.... +.+..+...++......|. +++--..|+
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~-~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a 167 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAI-QEFAAAQQTLEDLMEYNPAFRSPDGHLLFA 167 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhh-ccHHHHHHHHHHHhhcCCccCCCCchHHHH
Confidence 344455556666789999999999999986 678888888888765543 3567788999998887773 334444455
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCccc-cHHHHHHHHHH
Q 015472 100 LSLERSRASEEEISTVFEKSLLCAFS-TFEEYLDLFLT 136 (406)
Q Consensus 100 ~~lE~~~~~~e~ar~if~~al~~~~~-~~~~~~~l~~~ 136 (406)
..+- .+|....++..|+-++.+.|+ ..-.++..|+.
T Consensus 168 R~la-a~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La 204 (251)
T COG4700 168 RTLA-AQGKYADAESAFEVAISYYPGPQARIYYAEMLA 204 (251)
T ss_pred HHHH-hcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 5453 478899999999999998664 34455555543
No 245
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.12 E-value=11 Score=36.64 Aligned_cols=82 Identities=20% Similarity=0.207 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhhhhcC---CchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHH
Q 015472 160 IRETFQRASDYLSEQMKN---TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEA 236 (406)
Q Consensus 160 ~r~~f~~a~~~l~~~~~~---~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~a 236 (406)
.+.-|+.|+.+++-.... ..+...+|+.+..| .+| |+++|..+|.-+.....-..++|...+-.-.-.|.+..|
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~f--hLg-dY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYF--HLG-DYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHH--hhc-cHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence 344555566555432211 23467899988754 478 999999999999987544567887777655566778888
Q ss_pred HHHHHHHH
Q 015472 237 RSIYKRCY 244 (406)
Q Consensus 237 r~l~~ral 244 (406)
.++-.+|-
T Consensus 111 ~~~~~ka~ 118 (557)
T KOG3785|consen 111 KSIAEKAP 118 (557)
T ss_pred HHHHhhCC
Confidence 77766654
No 246
>KOG1972 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.70 E-value=7.1 Score=41.77 Aligned_cols=49 Identities=27% Similarity=0.523 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015472 53 FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSL 102 (406)
Q Consensus 53 ~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~l 102 (406)
+|.++.+|..|+..+...++ .+....++.+|+..|||...|...++..+
T Consensus 832 l~~~~~~WR~yl~~lskl~~-~~~~~~~~tkA~~sCpW~K~l~md~ie~l 880 (913)
T KOG1972|consen 832 LPDENSKWRDYLEALSKLLN-KERSKAASTKALDSCPWAKWLEMDVIEDL 880 (913)
T ss_pred CCcchhHHHHHHHHHHHhhh-hhhhHHHHHHHhhcCchHHHHHHHHHHhc
Confidence 57788899999998877654 78888899999999998777766666533
No 247
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=69.62 E-value=1.2e+02 Score=34.15 Aligned_cols=98 Identities=13% Similarity=0.220 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHhc---C-C-hhHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHh--C
Q 015472 22 KFQQYMIYLKYEQSS---G-D-PGRVQLLYERAITDF------PVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKN--C 88 (406)
Q Consensus 22 ~~~~w~~Yi~~E~~~---g-~-~~~~~~lyEral~~~------P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~--~ 88 (406)
.+..|..|+.|.... | . ......+.+||+... +.++.+-.-|+-+... .....+.++|.-+... .
T Consensus 33 Pl~~w~ryi~wv~~~~~~~~~~~~~l~~~lerc~~~~~~lk~Y~nD~Rfl~~~~~~~~~--e~~~d~~d~f~~m~~kgIg 110 (974)
T KOG1166|consen 33 PLDKWLRYIEWVLEVYPEGKENQSLLRNLLERCLEELEDLKRYRNDPRFLILWCSLELR--EELQDAEDFFSYLENKGIG 110 (974)
T ss_pred chhhhHhHhhhhhhccccCCchhhhHHHHHHHHHHhccchhhccccHHHHHHHHhHHHH--HHHhhHHHHHHHHHhcccc
Confidence 467899999997653 3 3 456788888887664 3455533333321111 1345678888887653 3
Q ss_pred CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 015472 89 PWVGELWVRSLLSLERSRASEEEISTVFEKSLLC 122 (406)
Q Consensus 89 P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~ 122 (406)
+....++..|+..+|+ .+.+.+|..+|+.+++.
T Consensus 111 ~~lalfYe~~a~~lE~-k~~~keA~~v~q~Giq~ 143 (974)
T KOG1166|consen 111 TTLALFYEAYAKHLER-KEYFKEAKEVFQLGIQN 143 (974)
T ss_pred chhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 5556788888876765 55699999999999984
No 248
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=68.51 E-value=63 Score=30.63 Aligned_cols=51 Identities=16% Similarity=0.053 Sum_probs=30.5
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHH
Q 015472 33 EQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRA 84 (406)
Q Consensus 33 E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA 84 (406)
....|..+.+...+++-+...|.+..+|...+......+ ....++..|++.
T Consensus 163 ~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g-~~~~ai~~y~~l 213 (280)
T COG3629 163 LIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNG-RQSAAIRAYRQL 213 (280)
T ss_pred HHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcC-CchHHHHHHHHH
Confidence 334456666666666666667777777766666555433 344566666554
No 249
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=67.11 E-value=1.4e+02 Score=29.79 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=46.8
Q ss_pred cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHH
Q 015472 36 SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDK-TLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEIST 114 (406)
Q Consensus 36 ~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~-~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~ 114 (406)
.|+.+.++.-||-++. +|..-.+=+. +-|++- ..+..+.++..-++|-..-|.-.=.|...+... -..|+.+.+.+
T Consensus 133 eG~~~~Ar~kfeAMl~-dPEtRllGLR-gLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r-~~~gdWd~Alk 209 (531)
T COG3898 133 EGDYEDARKKFEAMLD-DPETRLLGLR-GLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEAR-CAAGDWDGALK 209 (531)
T ss_pred cCchHHHHHHHHHHhc-ChHHHHHhHH-HHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHH-HhcCChHHHHH
Confidence 3777888888876653 3543222222 223322 234556677777888776665544454444322 23577777777
Q ss_pred HHHHHHh
Q 015472 115 VFEKSLL 121 (406)
Q Consensus 115 if~~al~ 121 (406)
+.+....
T Consensus 210 Lvd~~~~ 216 (531)
T COG3898 210 LVDAQRA 216 (531)
T ss_pred HHHHHHH
Confidence 7766554
No 250
>PRK10941 hypothetical protein; Provisional
Probab=66.94 E-value=67 Score=30.30 Aligned_cols=70 Identities=14% Similarity=-0.045 Sum_probs=57.4
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHH
Q 015472 191 LEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLR 262 (406)
Q Consensus 191 ~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~ 262 (406)
.....+ ++++|..+-++.+...|+++.-|..-+-...+.|.+..|+.=|+..+. .+|.+....+....+.
T Consensus 190 ~~~~~~-~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~-~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 190 ALMEEK-QMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE-QCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHcC-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-hCCCchhHHHHHHHHH
Confidence 345566 899999999999999999999999999889999999999999999998 5776544444444443
No 251
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=66.29 E-value=36 Score=33.13 Aligned_cols=57 Identities=21% Similarity=0.337 Sum_probs=46.2
Q ss_pred hhhhHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHH
Q 015472 73 VGNVVRDVYSRATKNCPWV---GELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEY 130 (406)
Q Consensus 73 ~~e~a~~vyerA~~~~P~~---~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~ 130 (406)
..+++..++...+.++|.. ...|+-.+. |+...++++.+..+|+.|+..+-..++++
T Consensus 118 p~eei~~~L~~li~~IP~A~K~aKYWIC~Ar-l~~~~~~~e~vi~iyEeAi~agAqPieEl 177 (353)
T PF15297_consen 118 PKEEILATLSDLIKNIPDAKKLAKYWICLAR-LEPRTGPIEDVIAIYEEAILAGAQPIEEL 177 (353)
T ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHHHHH-HHhhcCCHHHHHHHHHHHHHcCCChHHHH
Confidence 4578899999999999964 478999998 66668999999999999999876544444
No 252
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.18 E-value=1.2e+02 Score=28.31 Aligned_cols=117 Identities=14% Similarity=0.150 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH------hccchHHHHHHHHHHHHHc
Q 015472 157 YSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLK------ISGAMLEAWQSYISMEIEL 230 (406)
Q Consensus 157 ~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~------~~~~~~~lW~~y~~~E~~~ 230 (406)
.+.+...|++++..+...-. ...-++++...++++.++. .+..|-..|.+-.. ..++.....+.-|-.....
T Consensus 126 Pd~AlqlYqralavve~~dr-~~ma~el~gk~sr~lVrl~-kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~ 203 (308)
T KOG1585|consen 126 PDDALQLYQRALAVVEEDDR-DQMAFELYGKCSRVLVRLE-KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYA 203 (308)
T ss_pred HHHHHHHHHHHHHHHhccch-HHHHHHHHHHhhhHhhhhH-HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhH
Confidence 34566777777666532100 0112445555666666665 45555444443222 2344444555555445555
Q ss_pred ccHHHHHHHHHHHHhc-ccCCCChHHHHHHHHHHHHHhCCHHHHHHH
Q 015472 231 DHINEARSIYKRCYSK-RFTGTGSEDICHAWLRFEREYGTLEDFDHS 276 (406)
Q Consensus 231 g~~~~ar~l~~ral~~-~~~~~~~~~i~~~~i~fE~~~G~~e~~~~a 276 (406)
+++..|..+|..+.+. .|.++.....++..+.+= +.||.+.+...
T Consensus 204 ~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 204 HDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 7899999999987754 122232334556655542 34888888773
No 253
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=65.18 E-value=1.1e+02 Score=28.93 Aligned_cols=61 Identities=13% Similarity=0.059 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 015472 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (406)
Q Consensus 184 l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~ 245 (406)
....++..+...+ +.+.+...+++.+..+|-+..+|...+......|+...|...|++.-.
T Consensus 155 ~l~~lae~~~~~~-~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACG-RADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcc-cHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3344555555666 899999999999999999999999999999999999999999998765
No 254
>PF08640 U3_assoc_6: U3 small nucleolar RNA-associated protein 6; InterPro: IPR013949 This entry represents U3 nucleolar RNA-associated proteins which are involved in nucleolar processing of pre-18S ribosomal RNA [].
Probab=64.10 E-value=8.9 Score=29.19 Aligned_cols=31 Identities=23% Similarity=0.474 Sum_probs=24.7
Q ss_pred chhhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhc
Q 015472 2 CNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSS 36 (406)
Q Consensus 2 ~~~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~ 36 (406)
..+|..||..|.+... ....|+.||.||...
T Consensus 26 vkkR~~fEy~L~rr~~----~~~Dfl~YI~yE~~L 56 (83)
T PF08640_consen 26 VKKRRDFEYKLQRRGK----KKSDFLRYIEYEMNL 56 (83)
T ss_pred HHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHH
Confidence 4689999999988763 356899999999743
No 255
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=63.20 E-value=1.4e+02 Score=28.46 Aligned_cols=104 Identities=13% Similarity=0.100 Sum_probs=75.0
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhC-CC-----
Q 015472 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFP----VSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC-PW----- 90 (406)
Q Consensus 21 ~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P----~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~-P~----- 90 (406)
+....|+.++....+.|.++.|...+.++...++ ..+.+=+.|+++++..+ ....|....+..+... ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g-~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQG-EQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhhhccccc
Confidence 4667999999999999999999999999887642 25778889999998876 3455666666666511 10
Q ss_pred ----------------------------CHHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHhCccc
Q 015472 91 ----------------------------VGELWVRSLLSLERS-----RASEEEISTVFEKSLLCAFS 125 (406)
Q Consensus 91 ----------------------------~~~lW~~y~~~lE~~-----~~~~e~ar~if~~al~~~~~ 125 (406)
...++..++.++... ....+.+...|..|+...+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 290 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS 290 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh
Confidence 124566666655442 36788889999999887664
No 256
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=63.11 E-value=11 Score=34.63 Aligned_cols=57 Identities=21% Similarity=0.256 Sum_probs=48.5
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCC
Q 015472 34 QSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV 91 (406)
Q Consensus 34 ~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~ 91 (406)
.+.|+.+.+..+|.+++..-|....-|.....|.+..+ ..+.+.+.|+..++..|..
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag-~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAG-EFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcc-cHHHHHHHHHHHHcCCccc
Confidence 34678888999999999999999999999999988765 6788889999999888864
No 257
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.86 E-value=3.7 Score=39.61 Aligned_cols=87 Identities=17% Similarity=0.041 Sum_probs=70.1
Q ss_pred hcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCH--HHHHHHHHHHHHccCCHHHH
Q 015472 35 SSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVG--ELWVRSLLSLERSRASEEEI 112 (406)
Q Consensus 35 ~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~--~lW~~y~~~lE~~~~~~e~a 112 (406)
..|.++.+..+|-+++..+|.+..+....+..+.. .+.+..+..=|.+|+...|.+. .-|..|+. +..++.+++
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk-l~kp~~airD~d~A~ein~Dsa~~ykfrg~A~---rllg~~e~a 201 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLK-LKKPNAAIRDCDFAIEINPDSAKGYKFRGYAE---RLLGNWEEA 201 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeee-ccCCchhhhhhhhhhccCcccccccchhhHHH---HHhhchHHH
Confidence 34789999999999999999999888887765543 3346678899999999999764 57777775 446889999
Q ss_pred HHHHHHHHhCccc
Q 015472 113 STVFEKSLLCAFS 125 (406)
Q Consensus 113 r~if~~al~~~~~ 125 (406)
...|..+++...+
T Consensus 202 a~dl~~a~kld~d 214 (377)
T KOG1308|consen 202 AHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHhcccc
Confidence 9999999987653
No 258
>PRK10941 hypothetical protein; Provisional
Probab=61.98 E-value=35 Score=32.20 Aligned_cols=53 Identities=15% Similarity=-0.001 Sum_probs=23.6
Q ss_pred CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCC
Q 015472 37 GDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPW 90 (406)
Q Consensus 37 g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~ 90 (406)
+++++|..+-++.|...|.++..|.+.+-...+ .+....|+.=++.-+.+||.
T Consensus 195 ~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~q-L~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 195 KQMELALRASEALLQFDPEDPYEIRDRGLIYAQ-LDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhCCC
Confidence 444444444444444444444444444433222 22334444444444444444
No 259
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=61.54 E-value=1.3e+02 Score=27.59 Aligned_cols=55 Identities=11% Similarity=0.053 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHhhhhc-CCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 015472 158 SLIRETFQRASDYLSEQMK-NTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (406)
Q Consensus 158 ~~~r~~f~~a~~~l~~~~~-~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~ 212 (406)
+.+..+|++|.+.....+. .+|-.+.+..+|+-|....-++.++|..+-..|+..
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 4578899999887665333 355668899999999877555898888776666544
No 260
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.34 E-value=8.9 Score=37.10 Aligned_cols=80 Identities=16% Similarity=0.123 Sum_probs=59.0
Q ss_pred HHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHH--HHHHHHHHHHHcccHHHHHHHHH
Q 015472 164 FQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE--AWQSYISMEIELDHINEARSIYK 241 (406)
Q Consensus 164 f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~--lW~~y~~~E~~~g~~~~ar~l~~ 241 (406)
|+.|++.+...+...++...++..-+.....++ .+..|..=+..++.++|+... -|..|++ ..+|++..|+..|.
T Consensus 130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~-kp~~airD~d~A~ein~Dsa~~ykfrg~A~--rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLK-KPNAAIRDCDFAIEINPDSAKGYKFRGYAE--RLLGNWEEAAHDLA 206 (377)
T ss_pred hhhhhcccccccccCCchhhhcccccceeeecc-CCchhhhhhhhhhccCcccccccchhhHHH--HHhhchHHHHHHHH
Confidence 455555554444445555556666666667778 788999999999999998764 6777764 66799999999999
Q ss_pred HHHhc
Q 015472 242 RCYSK 246 (406)
Q Consensus 242 ral~~ 246 (406)
.+++.
T Consensus 207 ~a~kl 211 (377)
T KOG1308|consen 207 LACKL 211 (377)
T ss_pred HHHhc
Confidence 99874
No 261
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=59.01 E-value=14 Score=33.85 Aligned_cols=55 Identities=13% Similarity=0.242 Sum_probs=48.8
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 191 LEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 191 ~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
+....+ |.+.|-++|.+++...|....-|.....+....|+++.|-..|+..++.
T Consensus 4 ~~~~~~-D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 4 MLAESG-DAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hhcccC-ChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 344556 8899999999999999999999999999999999999999999998875
No 262
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=56.92 E-value=57 Score=31.79 Aligned_cols=48 Identities=15% Similarity=0.197 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHhccc---hHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 199 MVSARGVWERLLKISGA---MLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 199 ~~~Ar~ife~al~~~~~---~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
.+.++.++...++..|+ .+.+|+-.+.++...|.++.+..||+.|+..
T Consensus 119 ~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~a 169 (353)
T PF15297_consen 119 KEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILA 169 (353)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Confidence 45677788888888775 4579999999999999999999999999974
No 263
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.41 E-value=1.9e+02 Score=27.40 Aligned_cols=63 Identities=14% Similarity=0.062 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHHhc-------chhhhHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCCHHHHHHHHHH
Q 015472 55 VSSDLWLDYTQYLDKTL-------KVGNVVRDVYSRATKNC-PWVGELWVRSLLSLERSRASEEEISTVFEK 118 (406)
Q Consensus 55 ~~~~lW~~Y~~~l~~~~-------~~~e~a~~vyerA~~~~-P~~~~lW~~y~~~lE~~~~~~e~ar~if~~ 118 (406)
.+..+|.....++.-.. +.+......|...+... |..+.|-..+.. +..+-|+++.+...|++
T Consensus 167 Ssv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr-~~MQ~GD~k~a~~yf~~ 237 (366)
T KOG2796|consen 167 SSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGR-ISMQIGDIKTAEKYFQD 237 (366)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHH-HHHhcccHHHHHHHHHH
Confidence 35667766555443211 12233444555555444 334444444443 44455666666555554
No 264
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=55.17 E-value=10 Score=38.65 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=17.3
Q ss_pred CCCCCCccceeeecccccccC
Q 015472 385 TKGFTDECTAFLSNINLKASH 405 (406)
Q Consensus 385 ~~~~~~~~~~f~~n~~~~~~~ 405 (406)
.+..+..-||||-||||+++|
T Consensus 286 ~en~~~~~tVFvRNL~fD~tE 306 (678)
T KOG0127|consen 286 RENITEGKTVFVRNLPFDTTE 306 (678)
T ss_pred cccccccceEEEecCCccccH
Confidence 455566789999999999986
No 265
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=55.02 E-value=1.5e+02 Score=29.61 Aligned_cols=95 Identities=23% Similarity=0.189 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcch-hhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCC---HHHHHHHH
Q 015472 41 RVQLLYERAITDFPVSSDLWLDYTQYLDKTLKV-GNVVRDVYSRATKNCPWVGELWVRSLLSLERSRAS---EEEISTVF 116 (406)
Q Consensus 41 ~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~-~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~---~e~ar~if 116 (406)
.-...-+-||..+|.+..+|....-.+.+.... ...-..+.+++++..|.+-.-|.-.--..+....+ ..+=.++-
T Consensus 93 ~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ft 172 (421)
T KOG0529|consen 93 EELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFT 172 (421)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHH
Confidence 345677889999999999999998888765432 55678899999999998888775432223322222 22333455
Q ss_pred HHHHhCccc--cHHHHHHHHH
Q 015472 117 EKSLLCAFS--TFEEYLDLFL 135 (406)
Q Consensus 117 ~~al~~~~~--~~~~~~~l~~ 135 (406)
.+++...|. +.|.|-.+.+
T Consensus 173 t~~I~~nfSNYsaWhyRs~lL 193 (421)
T KOG0529|consen 173 TKLINDNFSNYSAWHYRSLLL 193 (421)
T ss_pred HHHHhccchhhhHHHHHHHHH
Confidence 666665554 5666665554
No 266
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=51.73 E-value=1.4e+02 Score=29.36 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=27.1
Q ss_pred HHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 015472 193 QSMGKDMVSARGVWERLLKISGAMLEAWQSYISM 226 (406)
Q Consensus 193 ~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~ 226 (406)
..+| .+..|.+-+|.+|...|.+.++-..|+.+
T Consensus 176 ~~Lg-~~~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 176 ESLG-NNMEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred HHHh-hHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 3467 78899999999999999888887777764
No 267
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=51.59 E-value=44 Score=20.49 Aligned_cols=25 Identities=24% Similarity=0.217 Sum_probs=13.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHh
Q 015472 187 YWAHLEQSMGKDMVSARGVWERLLKI 212 (406)
Q Consensus 187 ~~a~~e~~~~~d~~~Ar~ife~al~~ 212 (406)
..+.+....| +++.|..++++++..
T Consensus 7 ~la~~~~~~g-~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 7 NLANAYRAQG-RYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHCT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhh-hcchhhHHHHHHHHH
Confidence 3444445555 566666666666554
No 268
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=50.79 E-value=42 Score=20.56 Aligned_cols=28 Identities=11% Similarity=0.049 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 219 AWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 219 lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
.....+.+....|+++.|..++++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4566777788899999999999999874
No 269
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=49.83 E-value=81 Score=23.77 Aligned_cols=48 Identities=8% Similarity=0.040 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 015472 198 DMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (406)
Q Consensus 198 d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~ 245 (406)
....|..+|.++|+..++.++-|..+.-+-..+.++-+.|..+.-|+.
T Consensus 21 ~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 21 ETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred hHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999888888887777666666666666666666664
No 270
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=48.84 E-value=6.2e+02 Score=31.43 Aligned_cols=212 Identities=15% Similarity=0.176 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCC----------C------HHHHHHHHHHHHHhcc-hhhhHHHHHHHH
Q 015472 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITD-FPV----------S------SDLWLDYTQYLDKTLK-VGNVVRDVYSRA 84 (406)
Q Consensus 23 ~~~w~~Yi~~E~~~g~~~~~~~lyEral~~-~P~----------~------~~lW~~Y~~~l~~~~~-~~e~a~~vyerA 84 (406)
..+..+.+.|+-..|+-..|..+.+..+.. +|. + ...-+.+..|++..++ ....+.+.|..|
T Consensus 1702 ~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~ 1781 (2382)
T KOG0890|consen 1702 PEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDA 1781 (2382)
T ss_pred chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 458899999999999999999999999955 333 1 1245566677766543 234588999999
Q ss_pred HHhCC-CCH-HHHHH--HHHHHHHc-------cCCHHH---HHHHHHHHHhCccc----cHHHHHHHHHHHHHHHHHHHh
Q 015472 85 TKNCP-WVG-ELWVR--SLLSLERS-------RASEEE---ISTVFEKSLLCAFS----TFEEYLDLFLTRIDGLRRRIL 146 (406)
Q Consensus 85 ~~~~P-~~~-~lW~~--y~~~lE~~-------~~~~e~---ar~if~~al~~~~~----~~~~~~~l~~~~~~~l~Rr~~ 146 (406)
+...| |.. .+... |..+++.. .|++.. +-.-|.+++..+.. .+.-++.+|+.. -.....
T Consensus 1782 ~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~---~t~~~~ 1858 (2382)
T KOG0890|consen 1782 KAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDI---GTHISS 1858 (2382)
T ss_pred HHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhh---cchhcc
Confidence 99999 432 12222 33333333 233333 33344677776543 233355566431 000000
Q ss_pred ccccch---hhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh----ccchHHH
Q 015472 147 FSGEVE---GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI----SGAMLEA 219 (406)
Q Consensus 147 ~~~~~e---~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~----~~~~~~l 219 (406)
.++.-. ...+.+.+.+..++|+++++++ ..+-.|.++..++.+..+.+-.+....+.. .|. -.+
T Consensus 1859 ~ek~~r~ei~s~~~~~in~~i~~~~~~lp~Y--------~f~ta~sQLlSRicH~~~dV~~vl~~II~~l~~~YPq-q~l 1929 (2382)
T KOG0890|consen 1859 VEKAPRGEIVSKNLKLINSLIEEALEHLPTY--------QFYTAYSQLLSRICHPNQDVARVLKHIIAKLVLAYPQ-QTL 1929 (2382)
T ss_pred cccCChhhhhhhhHHHHHHHHHHHHHhCcch--------HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCch-HHH
Confidence 000000 1124445667777787776432 244568888888765555566666666554 342 468
Q ss_pred HHHHHHHHHHc-ccHHHHHHHHHHHHhc
Q 015472 220 WQSYISMEIEL-DHINEARSIYKRCYSK 246 (406)
Q Consensus 220 W~~y~~~E~~~-g~~~~ar~l~~ral~~ 246 (406)
|..-+-+=-.. ....++..|+.++...
T Consensus 1930 W~~~a~~kS~~p~R~~R~keIL~k~~~~ 1957 (2382)
T KOG0890|consen 1930 WQSAALSKSNVPSRVERCKEILTKSRRQ 1957 (2382)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhc
Confidence 98777543322 4677888899988764
No 271
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=47.14 E-value=82 Score=30.11 Aligned_cols=54 Identities=17% Similarity=0.088 Sum_probs=44.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 015472 189 AHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRC 243 (406)
Q Consensus 189 a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ra 243 (406)
+......| .+..|..+-+++++.+|-+...|..++......|+--.+.+-|+|.
T Consensus 286 a~~yle~g-~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 286 ARAYLEAG-KPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHcC-ChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 44445567 8999999999999999999999999999999999877776666654
No 272
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=46.75 E-value=11 Score=36.84 Aligned_cols=21 Identities=0% Similarity=0.004 Sum_probs=17.3
Q ss_pred CCCCCCccceeeecccccccC
Q 015472 385 TKGFTDECTAFLSNINLKASH 405 (406)
Q Consensus 385 ~~~~~~~~~~f~~n~~~~~~~ 405 (406)
+......+||||+|||++++|
T Consensus 101 ~~~~~~~~~LfVgnLp~~~te 121 (346)
T TIGR01659 101 NDTNNSGTNLIVNYLPQDMTD 121 (346)
T ss_pred cCCCCCCcEEEEeCCCCCCCH
Confidence 345567889999999999986
No 273
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=42.85 E-value=99 Score=29.58 Aligned_cols=67 Identities=16% Similarity=0.109 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHH
Q 015472 40 GRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEK 118 (406)
Q Consensus 40 ~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~ 118 (406)
+++..+|-..+-.- +.+.... +.+..|..+.+|+++..|-+...|..++..+-. .|+.-.+.+.|++
T Consensus 272 erle~ly~kllgkv----------a~~yle~-g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~-~gD~is~~khyer 338 (361)
T COG3947 272 ERLEQLYMKLLGKV----------ARAYLEA-GKPNEAIQLHQRALTLDPLSEQDNKGLMASLAT-LGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHHHHHHHH----------HHHHHHc-CChHHHHHHHHHHhhcChhhhHHHHHHHHHHHH-hccchhhhhHHHH
Confidence 56666666555331 2222222 356778888999999888888888888775543 4554344444444
No 274
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=42.28 E-value=3.5e+02 Score=26.65 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=20.2
Q ss_pred hcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHH
Q 015472 51 TDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATK 86 (406)
Q Consensus 51 ~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~ 86 (406)
..+|.+++.-+.....+..++ +.+.+..+.+||+-
T Consensus 34 ~~~PyHidtLlqls~v~~~~g-d~~~A~~lleRALf 68 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQG-DHAQANDLLERALF 68 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 445666666666665555443 45556666666653
No 275
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=40.67 E-value=15 Score=31.07 Aligned_cols=18 Identities=6% Similarity=0.097 Sum_probs=14.5
Q ss_pred CCCccceeeecccccccC
Q 015472 388 FTDECTAFLSNINLKASH 405 (406)
Q Consensus 388 ~~~~~~~f~~n~~~~~~~ 405 (406)
-....+|||+||+++++|
T Consensus 31 ~~~~~~lfVgnL~~~~te 48 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDD 48 (144)
T ss_pred cCCCCEEEEeCCCCCCCH
Confidence 344559999999999886
No 276
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=38.18 E-value=4.6e+02 Score=26.84 Aligned_cols=172 Identities=11% Similarity=-0.002 Sum_probs=89.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCcc-ccHHHHHHHH-HHHHHHHHHHHhccccchhhh
Q 015472 78 RDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAF-STFEEYLDLF-LTRIDGLRRRILFSGEVEGVL 155 (406)
Q Consensus 78 ~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~-~~~~~~~~l~-~~~~~~l~Rr~~~~~~~e~~~ 155 (406)
.-+|.-.++.+|... ...+.++- -.+|-+.....+.+|.+... ... +..+. +.+...+. ....... ...
T Consensus 177 ~G~f~L~lSlLPp~~---~kll~~vG-F~gdR~~GL~~L~~~~~~~~i~~~--la~L~LL~y~~~~~-~~~~~~~--~~~ 247 (468)
T PF10300_consen 177 FGLFNLVLSLLPPKV---LKLLSFVG-FSGDRELGLRLLWEASKSENIRSP--LAALVLLWYHLVVP-SFLGIDG--EDV 247 (468)
T ss_pred HHHHHHHHHhCCHHH---HHHHhhcC-cCCcHHHHHHHHHHHhccCCcchH--HHHHHHHHHHHHHH-HHcCCcc--cCC
Confidence 346677777777431 11122222 25777777788888877321 111 11111 11211221 1111100 112
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCCchHHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHhccchHH----HHHHHHHHHHHc
Q 015472 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAY-WAHLEQSMGKDMVSARGVWERLLKISGAMLE----AWQSYISMEIEL 230 (406)
Q Consensus 156 ~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~-~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~----lW~~y~~~E~~~ 230 (406)
+...+..+.+.....+ |.. .+|.. -++++...| +++.|...|++++........ .+-..+-....+
T Consensus 248 ~~~~a~~lL~~~~~~y-------P~s-~lfl~~~gR~~~~~g-~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~ 318 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRY-------PNS-ALFLFFEGRLERLKG-NLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQ 318 (468)
T ss_pred CHHHHHHHHHHHHHhC-------CCc-HHHHHHHHHHHHHhc-CHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHH
Confidence 3334555555544432 332 35554 477887788 999999999999964332222 112222223456
Q ss_pred ccHHHHHHHHHHHHhcccCCCChHHHHHHHHH-HHHHhCCH
Q 015472 231 DHINEARSIYKRCYSKRFTGTGSEDICHAWLR-FEREYGTL 270 (406)
Q Consensus 231 g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~-fE~~~G~~ 270 (406)
+++++|-..|.+.+.. ..|+..++.-... ..-..|..
T Consensus 319 ~~w~~A~~~f~~L~~~---s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 319 HDWEEAAEYFLRLLKE---SKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred chHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHhhccc
Confidence 8999999999999974 5667666554333 23334554
No 277
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=37.80 E-value=1.8e+02 Score=22.17 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHHh----ccch-----HHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 198 DMVSARGVWERLLKI----SGAM-----LEAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 198 d~~~Ar~ife~al~~----~~~~-----~~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
|+..|...+.+.+.. .... ....+..+.+....|+.+.|...++.|+..
T Consensus 13 dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 13 DYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred CHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 666665554444433 2111 234566667777788999999888888864
No 278
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=37.62 E-value=60 Score=18.34 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=15.0
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHh
Q 015472 220 WQSYISMEIELDHINEARSIYKRCYS 245 (406)
Q Consensus 220 W~~y~~~E~~~g~~~~ar~l~~ral~ 245 (406)
|...++...+.|+++.|..+|++-.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44555555566666666666665443
No 279
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=37.50 E-value=4.3e+02 Score=26.52 Aligned_cols=119 Identities=13% Similarity=0.099 Sum_probs=76.8
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-ch---hhhHHHHH
Q 015472 8 LEEQISRQDLSDSEKFQQYMIYLKYEQSSG--DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTL-KV---GNVVRDVY 81 (406)
Q Consensus 8 yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g--~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~-~~---~e~a~~vy 81 (406)
.+.+|+.+| ..+.+|..-.-...+++ +...=..+.+++|..+|.|...|. |=.|+-... .. ...-....
T Consensus 98 ~~~~L~~np----ksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~-YRRfV~~~~~~~~~~~~~El~ft 172 (421)
T KOG0529|consen 98 VESALKVNP----KSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWH-YRRFVVEQAERSRNLEKEELEFT 172 (421)
T ss_pred HHHHHHhCc----hhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchH-HHHHHHHHHhcccccchhHHHHH
Confidence 455666665 45777876555556555 356778999999999999999996 545554322 11 33456788
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHc-----cC---CHHHHHHHHHHHHhC---ccc--cHHHHH
Q 015472 82 SRATKNCPWVGELWVRSLLSLERS-----RA---SEEEISTVFEKSLLC---AFS--TFEEYL 131 (406)
Q Consensus 82 erA~~~~P~~~~lW~~y~~~lE~~-----~~---~~e~ar~if~~al~~---~~~--~~~~~~ 131 (406)
.+++..++..-..|......+... .| +.+.++.=++...+. .|. +.|.|.
T Consensus 173 t~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~ 235 (421)
T KOG0529|consen 173 TKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYH 235 (421)
T ss_pred HHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence 999998988888998887766522 23 244455545444442 232 566663
No 280
>PF13041 PPR_2: PPR repeat family
Probab=37.43 E-value=92 Score=20.40 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhccc
Q 015472 219 AWQSYISMEIELDHINEARSIYKRCYSKRF 248 (406)
Q Consensus 219 lW~~y~~~E~~~g~~~~ar~l~~ral~~~~ 248 (406)
.|...+....+.|+++.|..+|++.....+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g~ 34 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKRGI 34 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence 455666666666666667666666665433
No 281
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=37.05 E-value=1.3e+02 Score=20.71 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=19.3
Q ss_pred HHHcCCCHHHHHHHHHHHHHhccchHH
Q 015472 192 EQSMGKDMVSARGVWERLLKISGAMLE 218 (406)
Q Consensus 192 e~~~~~d~~~Ar~ife~al~~~~~~~~ 218 (406)
...+| +++.|+...+.+|+..|++..
T Consensus 11 ~ykl~-~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 11 HYKLG-EYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHTT--HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHhh-hHHHHHHHHHHHHhhCCCcHH
Confidence 35677 899999999999999887643
No 282
>PF12854 PPR_1: PPR repeat
Probab=37.04 E-value=79 Score=19.15 Aligned_cols=24 Identities=13% Similarity=0.075 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHH
Q 015472 184 LYAYWAHLEQSMGKDMVSARGVWER 208 (406)
Q Consensus 184 l~~~~a~~e~~~~~d~~~Ar~ife~ 208 (406)
.|...+.-..+.| .++.|+.+|++
T Consensus 9 ty~~lI~~~Ck~G-~~~~A~~l~~~ 32 (34)
T PF12854_consen 9 TYNTLIDGYCKAG-RVDEAFELFDE 32 (34)
T ss_pred HHHHHHHHHHHCC-CHHHHHHHHHh
Confidence 4444555556666 67777777654
No 283
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.61 E-value=3.6e+02 Score=25.14 Aligned_cols=54 Identities=15% Similarity=0.187 Sum_probs=34.1
Q ss_pred HHHcCCCHHHHHHHHHHHHHhccc-----h-HHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 192 EQSMGKDMVSARGVWERLLKISGA-----M-LEAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 192 e~~~~~d~~~Ar~ife~al~~~~~-----~-~~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
|..+. |+++|...||.+-..... + -...+.-+++--..+.+..|..+|+.....
T Consensus 124 Esdl~-d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 124 ESDLQ-DFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred hhhHH-HHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445 677777777777766421 1 135556666666677778888887776543
No 284
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=36.49 E-value=1.4e+02 Score=28.43 Aligned_cols=78 Identities=10% Similarity=0.039 Sum_probs=58.0
Q ss_pred HcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHH
Q 015472 194 SMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDF 273 (406)
Q Consensus 194 ~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~ 273 (406)
..+ +...|..+|..++...|.+.++-+.|++.....|+.+.|..++...=.. ...+ -..-..++|.|-..-++..++
T Consensus 146 ~~e-~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~-~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 146 EAE-DFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDK-AAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hcc-chhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhh-HHHHHHHHHHHHHHHhcCCCH
Confidence 456 8999999999999999999999999999999999999999998864221 1111 112256688886665554443
Q ss_pred H
Q 015472 274 D 274 (406)
Q Consensus 274 ~ 274 (406)
.
T Consensus 223 ~ 223 (304)
T COG3118 223 Q 223 (304)
T ss_pred H
Confidence 3
No 285
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=36.23 E-value=71 Score=21.03 Aligned_cols=23 Identities=30% Similarity=0.448 Sum_probs=14.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHH
Q 015472 188 WAHLEQSMGKDMVSARGVWERLLK 211 (406)
Q Consensus 188 ~a~~e~~~~~d~~~Ar~ife~al~ 211 (406)
+|+.+...| |.+.||.+.+..+.
T Consensus 5 LA~ayie~G-d~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMG-DLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcC-ChHHHHHHHHHHHH
Confidence 344445666 77777777777773
No 286
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=35.43 E-value=2e+02 Score=21.96 Aligned_cols=45 Identities=13% Similarity=-0.056 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCC
Q 015472 44 LLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCP 89 (406)
Q Consensus 44 ~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P 89 (406)
..++.++..+|.+.+.....+..+...+ ..+.+...+-..++..|
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g-~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAG-DYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHCC-T
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCc
Confidence 3456666667777777776666555433 45556666666665554
No 287
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=35.08 E-value=1.6e+02 Score=21.71 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=12.6
Q ss_pred HcccHHHHHHHHHHHHh
Q 015472 229 ELDHINEARSIYKRCYS 245 (406)
Q Consensus 229 ~~g~~~~ar~l~~ral~ 245 (406)
..|+++.|..+|..|+.
T Consensus 18 ~~g~y~eA~~lY~~ale 34 (75)
T cd02684 18 QRGDAAAALSLYCSALQ 34 (75)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 34778888888888775
No 288
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=34.18 E-value=72 Score=17.92 Aligned_cols=21 Identities=19% Similarity=0.048 Sum_probs=13.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHH
Q 015472 186 AYWAHLEQSMGKDMVSARGVWE 207 (406)
Q Consensus 186 ~~~a~~e~~~~~d~~~Ar~ife 207 (406)
...+......| +++.|+.+++
T Consensus 5 ~~la~~~~~~G-~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQG-DPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcC-CHHHHHHHHh
Confidence 34555566667 7777777665
No 289
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.07 E-value=4.7e+02 Score=25.76 Aligned_cols=88 Identities=8% Similarity=-0.007 Sum_probs=57.5
Q ss_pred CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHh----CCCCHHHHHHHHHHHHHccCCHHHH
Q 015472 37 GDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKN----CPWVGELWVRSLLSLERSRASEEEI 112 (406)
Q Consensus 37 g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~----~P~~~~lW~~y~~~lE~~~~~~e~a 112 (406)
|+.-.+...+++.|..+|.+.-.|..==....- .+..+..+..+++.+-. .|-+.-+--+|+--|+ ..|-+++|
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy-~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~-E~g~y~dA 194 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFY-NGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE-ECGIYDDA 194 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHh-ccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH-HhccchhH
Confidence 566677888899999999887777533222221 22334456666666543 3444556666764454 37888999
Q ss_pred HHHHHHHHhCcccc
Q 015472 113 STVFEKSLLCAFST 126 (406)
Q Consensus 113 r~if~~al~~~~~~ 126 (406)
++.-.+|++..+..
T Consensus 195 Ek~A~ralqiN~~D 208 (491)
T KOG2610|consen 195 EKQADRALQINRFD 208 (491)
T ss_pred HHHHHhhccCCCcc
Confidence 99999999976643
No 290
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=33.90 E-value=4.8e+02 Score=25.88 Aligned_cols=177 Identities=14% Similarity=0.128 Sum_probs=90.3
Q ss_pred CCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHh----CCCCHHHHHHHHHHHHHc--cCCHHHHHHHHHHHHhCcc-ccH
Q 015472 55 VSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKN----CPWVGELWVRSLLSLERS--RASEEEISTVFEKSLLCAF-STF 127 (406)
Q Consensus 55 ~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~----~P~~~~lW~~y~~~lE~~--~~~~e~ar~if~~al~~~~-~~~ 127 (406)
.++++-++++--.. ..++.+....+.+..-.. .+....+=..|+..|-++ .|+.++|..++..++.... ...
T Consensus 139 ls~div~~lllSyR-diqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~ 217 (374)
T PF13281_consen 139 LSPDIVINLLLSYR-DIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP 217 (374)
T ss_pred cChhHHHHHHHHhh-hhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh
Confidence 46666666653332 234678888888865443 344567777888666542 5789999999999776432 222
Q ss_pred HHHHHHH-HHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHH---HHH
Q 015472 128 EEYLDLF-LTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMV---SAR 203 (406)
Q Consensus 128 ~~~~~l~-~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~---~Ar 203 (406)
+. +.++ -.+-+ +...+...+ ...+.+|+..+.+.+...++ .--=++++-+....|.+.. +.+
T Consensus 218 d~-~gL~GRIyKD----~~~~s~~~d--------~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~~~~~el~ 283 (374)
T PF13281_consen 218 DT-LGLLGRIYKD----LFLESNFTD--------RESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHDFETSEELR 283 (374)
T ss_pred HH-HHHHHHHHHH----HHHHcCccc--------hHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCcccchHHHH
Confidence 22 2221 11110 111100000 11133444433333332221 1122355555555553232 233
Q ss_pred HHH---HHHHHh---ccchHHHH--HHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 204 GVW---ERLLKI---SGAMLEAW--QSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 204 ~if---e~al~~---~~~~~~lW--~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
+|- ...+.. .....+.| -.|++...-.|+.++|...+++++..
T Consensus 284 ~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 284 KIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 333 111111 12334567 45555566679999999999999963
No 291
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=33.20 E-value=99 Score=17.70 Aligned_cols=27 Identities=15% Similarity=0.317 Sum_probs=16.2
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 220 WQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 220 W~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
|...+....+.|+++.|..+|.+....
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 444555555666666666666665543
No 292
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=32.70 E-value=2.8e+02 Score=22.84 Aligned_cols=188 Identities=22% Similarity=0.183 Sum_probs=119.4
Q ss_pred CChhHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcchhhhHHHHHHHHHH--hCCCCHHHHHHHHHHHHHccCCHHHH
Q 015472 37 GDPGRVQLLYERAITDFPVS--SDLWLDYTQYLDKTLKVGNVVRDVYSRATK--NCPWVGELWVRSLLSLERSRASEEEI 112 (406)
Q Consensus 37 g~~~~~~~lyEral~~~P~~--~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~--~~P~~~~lW~~y~~~lE~~~~~~e~a 112 (406)
+....+...+..++...+.. .............. +....+...+..++. ..+.....+....... ...+++..+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 114 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKL-GRLEEALELLEKALELELLPNLAEALLNLGLLL-EALGKYEEA 114 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHc-ccHHHHHHHHHHHHhhhhccchHHHHHHHHHHH-HHHhhHHHH
Confidence 45556677788888777763 44444444444433 345667778888876 5666677777776633 456778889
Q ss_pred HHHHHHHHhCcccc--HHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHH
Q 015472 113 STVFEKSLLCAFST--FEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAH 190 (406)
Q Consensus 113 r~if~~al~~~~~~--~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~ 190 (406)
..++..++...+.. ...+.... +. ...+++..+...|.+++. ..+. .............
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~------~~---------~~~~~~~~a~~~~~~~~~-~~~~---~~~~~~~~~~~~~ 175 (291)
T COG0457 115 LELLEKALALDPDPDLAEALLALG------AL---------YELGDYEEALELYEKALE-LDPE---LNELAEALLALGA 175 (291)
T ss_pred HHHHHHHHcCCCCcchHHHHHHHH------HH---------HHcCCHHHHHHHHHHHHh-cCCC---ccchHHHHHHhhh
Confidence 99999988865432 11121110 00 001334456666777644 2110 0011222333333
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 191 LEQSMGKDMVSARGVWERLLKISGA-MLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 191 ~e~~~~~d~~~Ar~ife~al~~~~~-~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
.....+ +...+...+.+++...+. ....+..........+.+..+...+..++..
T Consensus 176 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 231 (291)
T COG0457 176 LLEALG-RYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL 231 (291)
T ss_pred HHHHhc-CHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh
Confidence 344566 899999999999999888 6888888888888889999999999999974
No 293
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=32.05 E-value=1.7e+02 Score=27.95 Aligned_cols=61 Identities=15% Similarity=0.212 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 015472 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKI--SGAMLEAWQSYISMEIELDHINEARSIYKRCY 244 (406)
Q Consensus 183 ~l~~~~a~~e~~~~~d~~~Ar~ife~al~~--~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral 244 (406)
.+...-.+.+...+ ++.+-..+|+.++.. .+.+...|-.|++.-...|+..-++++...+.
T Consensus 203 ~vi~~Il~~L~~~~-dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~Gh 265 (292)
T PF13929_consen 203 NVIISILEILAESR-DWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGH 265 (292)
T ss_pred hHHHHHHHHHHhcc-cHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCC
Confidence 35555666677788 999999999999988 55678899999999999999999999888763
No 294
>PF13041 PPR_2: PPR repeat family
Probab=30.97 E-value=1.5e+02 Score=19.35 Aligned_cols=28 Identities=14% Similarity=0.087 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 015472 184 LYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (406)
Q Consensus 184 l~~~~a~~e~~~~~d~~~Ar~ife~al~~ 212 (406)
.|...+....+.| +++.|.++|++..+.
T Consensus 5 ~yn~li~~~~~~~-~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 5 TYNTLISGYCKAG-KFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHCc-CHHHHHHHHHHHHHc
Confidence 4555566667888 899999999999987
No 295
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=30.90 E-value=5.8e+02 Score=25.86 Aligned_cols=87 Identities=18% Similarity=0.188 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHhhhhcCC---chHH---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---ccchHHHH---HHHHH
Q 015472 158 SLIRETFQRASDYLSEQMKNT---DGLL---RLYAYWAHLEQSMGKDMVSARGVWERLLKI---SGAMLEAW---QSYIS 225 (406)
Q Consensus 158 ~~~r~~f~~a~~~l~~~~~~~---~~~~---~l~~~~a~~e~~~~~d~~~Ar~ife~al~~---~~~~~~lW---~~y~~ 225 (406)
+.+++.|+.|.+|+...+... .+.. +.+-.++...+-+| |++.|....+.-|.+ +++-+..- ....+
T Consensus 165 ~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLG-df~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN 243 (639)
T KOG1130|consen 165 AEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLG-DFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGN 243 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeec-cHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccch
Confidence 357888888888763322110 0000 11122222233456 788777666655544 45544333 33333
Q ss_pred HHHHcccHHHHHHHHHHHHh
Q 015472 226 MEIELDHINEARSIYKRCYS 245 (406)
Q Consensus 226 ~E~~~g~~~~ar~l~~ral~ 245 (406)
.-+-.|+++.|-..|++++.
T Consensus 244 ~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 244 CHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred hhhhhcccHhHHHHHHHHHH
Confidence 34445777777777777654
No 296
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=30.32 E-value=4.6e+02 Score=24.50 Aligned_cols=50 Identities=18% Similarity=0.115 Sum_probs=28.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHH---HHHHHHcccHHHHHH
Q 015472 188 WAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSY---ISMEIELDHINEARS 238 (406)
Q Consensus 188 ~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y---~~~E~~~g~~~~ar~ 238 (406)
-+++..+.| .+..|..=++..+...|+....--++ .+.....|-.+.|..
T Consensus 173 IaryY~kr~-~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~ 225 (254)
T COG4105 173 IARYYLKRG-AYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKK 225 (254)
T ss_pred HHHHHHHhc-ChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHH
Confidence 344555666 77888888888888877643322222 222334555444433
No 297
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=29.90 E-value=5.9e+02 Score=25.64 Aligned_cols=50 Identities=14% Similarity=-0.060 Sum_probs=25.8
Q ss_pred hhhhHHHHHHHHHHhCCCCH--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCccc
Q 015472 73 VGNVVRDVYSRATKNCPWVG--ELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (406)
Q Consensus 73 ~~e~a~~vyerA~~~~P~~~--~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~ 125 (406)
..+.+++-|+-.+. .|... .|--.|+. - +..|..+.+++.-++|-..-|.
T Consensus 135 ~~~~Ar~kfeAMl~-dPEtRllGLRgLyle-A-qr~GareaAr~yAe~Aa~~Ap~ 186 (531)
T COG3898 135 DYEDARKKFEAMLD-DPETRLLGLRGLYLE-A-QRLGAREAARHYAERAAEKAPQ 186 (531)
T ss_pred chHHHHHHHHHHhc-ChHHHHHhHHHHHHH-H-HhcccHHHHHHHHHHHHhhccC
Confidence 45667777765442 44332 23333332 1 2356677777766666654443
No 298
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=29.15 E-value=1.4e+02 Score=27.52 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=17.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 015472 79 DVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLL 121 (406)
Q Consensus 79 ~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~ 121 (406)
..|.+|+...|.+|..|.+.+. +....++.-.+-=.|-|++.
T Consensus 3 ~~Y~~A~~l~P~~G~p~nQLAv-l~~~~~~~l~avy~y~Rsl~ 44 (278)
T PF10373_consen 3 RYYRKAIRLLPSNGNPYNQLAV-LASYQGDDLDAVYYYIRSLA 44 (278)
T ss_dssp HHHHHHHHH-TTBSHHHHHHHH-HHHHTT-HHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcccchhh-hhccccchHHHHHHHHHHHh
Confidence 3444444444544444444443 32333333333333444443
No 299
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=28.53 E-value=2e+02 Score=21.30 Aligned_cols=15 Identities=13% Similarity=0.189 Sum_probs=11.2
Q ss_pred ccHHHHHHHHHHHHh
Q 015472 231 DHINEARSIYKRCYS 245 (406)
Q Consensus 231 g~~~~ar~l~~ral~ 245 (406)
|+++.|..+|..|+.
T Consensus 20 ~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 20 GDYEAAFEFYRAGVD 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 677777777777775
No 300
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=28.08 E-value=3.2e+02 Score=22.02 Aligned_cols=65 Identities=15% Similarity=0.098 Sum_probs=41.3
Q ss_pred hcCChhHHHHHHHHHHhcCCCCHHHHHHHH---HHHHHhc---chh-------hhHHHHHHHHHHhCCCCHHHHHHHH
Q 015472 35 SSGDPGRVQLLYERAITDFPVSSDLWLDYT---QYLDKTL---KVG-------NVVRDVYSRATKNCPWVGELWVRSL 99 (406)
Q Consensus 35 ~~g~~~~~~~lyEral~~~P~~~~lW~~Y~---~~l~~~~---~~~-------e~a~~vyerA~~~~P~~~~lW~~y~ 99 (406)
..||.-.|..+.|..+..++.+...|.-.. .++.... .++ -.+...|.+++..+|.+..+-...+
T Consensus 8 ~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la 85 (111)
T PF04781_consen 8 ARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELA 85 (111)
T ss_pred HccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHH
Confidence 468999999999999999999988884221 1111100 111 1256777888888887754444433
No 301
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.82 E-value=7.5e+02 Score=26.18 Aligned_cols=109 Identities=13% Similarity=0.115 Sum_probs=60.7
Q ss_pred HHHHHHHHhhhhcCCchH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-------ccchHHHHHHHHHHHHHcccHHH
Q 015472 164 FQRASDYLSEQMKNTDGL-LRLYAYWAHLEQSMGKDMVSARGVWERLLKI-------SGAMLEAWQSYISMEIELDHINE 235 (406)
Q Consensus 164 f~~a~~~l~~~~~~~~~~-~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~-------~~~~~~lW~~y~~~E~~~g~~~~ 235 (406)
+..+..++.......+.. ..+...-+++....| ++..|..++...+.. ....+.+-..-..+..+.++.+.
T Consensus 357 ~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~g-n~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~ 435 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQG-NPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDS 435 (652)
T ss_pred HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCcc
Confidence 444555443333333322 345555667777777 888888888844422 12334444444444556667777
Q ss_pred HHHHHHHHHhcc---cCCC-ChHHHHHHHHHHHHHhCCHHHH
Q 015472 236 ARSIYKRCYSKR---FTGT-GSEDICHAWLRFEREYGTLEDF 273 (406)
Q Consensus 236 ar~l~~ral~~~---~~~~-~~~~i~~~~i~fE~~~G~~e~~ 273 (406)
|-+++..|+.-. .+.+ .-..+|..-..|+..+|+.++.
T Consensus 436 a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 436 ASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 777777776531 1111 1124556667788888887653
No 302
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.76 E-value=7.1e+02 Score=27.54 Aligned_cols=52 Identities=13% Similarity=0.172 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 015472 160 IRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (406)
Q Consensus 160 ~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~ 212 (406)
-+.+|.-|+......-...+....+...|+.++...| |.+.|..-|-+++..
T Consensus 346 kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kg-df~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 346 KKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKG-DFDEATDQYIETIGF 397 (933)
T ss_pred HhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHccc
Confidence 4567777877543221112345679999999999999 999999999988876
No 303
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=26.35 E-value=5.5e+02 Score=24.14 Aligned_cols=47 Identities=17% Similarity=0.080 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCcc
Q 015472 77 VRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAF 124 (406)
Q Consensus 77 a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~ 124 (406)
+..-....+++.|.....+...+.. ...--+..+|+.-|..+|...|
T Consensus 249 vleh~seiL~~~~~nvKA~frRakA-haa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 249 VLEHCSEILRHHPGNVKAYFRRAKA-HAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHH-HHhhcCHHHHHHHHHHHHhcCh
Confidence 4444444455555554444444431 1122345556666666666544
No 304
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=26.00 E-value=3.5e+02 Score=21.79 Aligned_cols=82 Identities=16% Similarity=0.301 Sum_probs=52.3
Q ss_pred HcCCCHHHHHHHHHHHHHhccchHHHHHH---HHHHHHHc----ccHH-------HHHHHHHHHHhcccCCCChHHHHHH
Q 015472 194 SMGKDMVSARGVWERLLKISGAMLEAWQS---YISMEIEL----DHIN-------EARSIYKRCYSKRFTGTGSEDICHA 259 (406)
Q Consensus 194 ~~~~d~~~Ar~ife~al~~~~~~~~lW~~---y~~~E~~~----g~~~-------~ar~l~~ral~~~~~~~~~~~i~~~ 259 (406)
..| |..+|.+|.+..+..++++...|+- -..+...+ .|.+ .+..+|.++... .| .--..
T Consensus 8 ~rG-nhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L-sp-----~~A~~ 80 (111)
T PF04781_consen 8 ARG-NHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL-SP-----DSAHS 80 (111)
T ss_pred Hcc-CHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-Ch-----hHHHH
Confidence 456 8999999999999998877655522 22222222 2222 455667777642 11 12555
Q ss_pred HHHHHHHhCCHHHHHHHHHhhch
Q 015472 260 WLRFEREYGTLEDFDHSVQKVTP 282 (406)
Q Consensus 260 ~i~fE~~~G~~e~~~~a~~k~~~ 282 (406)
...+-.+.|....+..|+.+|..
T Consensus 81 L~~la~~l~s~~~Ykk~v~kak~ 103 (111)
T PF04781_consen 81 LFELASQLGSVKYYKKAVKKAKR 103 (111)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 66677788999999998888743
No 305
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=25.94 E-value=1.1e+02 Score=31.17 Aligned_cols=89 Identities=15% Similarity=-0.076 Sum_probs=63.9
Q ss_pred cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHH
Q 015472 36 SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTV 115 (406)
Q Consensus 36 ~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~i 115 (406)
-+.++.+..+|-+||..+|++..+|...+.-.... .+...|..=+.+|+...|.....+..-+.+. ...+.+.+|...
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~-e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~-m~l~~~~~A~~~ 94 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKV-ESFGGALHDALKAIELDPTYIKAYVRRGTAV-MALGEFKKALLD 94 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhheee-chhhhHHHHHHhhhhcCchhhheeeeccHHH-HhHHHHHHHHHH
Confidence 35788999999999999999999998885322222 2456688888889998887555554444322 234557788888
Q ss_pred HHHHHhCcccc
Q 015472 116 FEKSLLCAFST 126 (406)
Q Consensus 116 f~~al~~~~~~ 126 (406)
|+......|+.
T Consensus 95 l~~~~~l~Pnd 105 (476)
T KOG0376|consen 95 LEKVKKLAPND 105 (476)
T ss_pred HHHhhhcCcCc
Confidence 88888877753
No 306
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=25.72 E-value=2.6e+02 Score=24.41 Aligned_cols=48 Identities=23% Similarity=0.161 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccC
Q 015472 200 VSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFT 249 (406)
Q Consensus 200 ~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~ 249 (406)
.......++.+...|+ +.+...|+......|+.++|+.+..++.. -+|
T Consensus 128 ~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~-lyP 175 (193)
T PF11846_consen 128 EAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARR-LYP 175 (193)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCC
Confidence 3445556666666774 77888888888888999999998888886 465
No 307
>PF15387 DUF4611: Domain of unknown function (DUF4611)
Probab=25.30 E-value=2.2e+02 Score=22.14 Aligned_cols=12 Identities=42% Similarity=0.581 Sum_probs=9.7
Q ss_pred cccCCccccccc
Q 015472 325 SYEQSPAKRQKH 336 (406)
Q Consensus 325 ~~~~~~~k~~k~ 336 (406)
...+||+||.|+
T Consensus 85 ~s~gP~AKR~Kp 96 (96)
T PF15387_consen 85 NSDGPPAKRPKP 96 (96)
T ss_pred cCCCCcccCCCC
Confidence 457899999884
No 308
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=24.64 E-value=6.7e+02 Score=24.54 Aligned_cols=60 Identities=15% Similarity=0.110 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHH
Q 015472 218 EAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSV 277 (406)
Q Consensus 218 ~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~a~ 277 (406)
+.|+.-++|..+.|+.++|...+.+...+.+......+|.-.-|++---|+|..-+..-+
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~i 164 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESI 164 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHH
Confidence 466666666666666666665555555443333333444444455544555544443333
No 309
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=24.36 E-value=6.8e+02 Score=24.55 Aligned_cols=44 Identities=11% Similarity=0.032 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCcc
Q 015472 78 RDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAF 124 (406)
Q Consensus 78 ~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~ 124 (406)
.+.-..|+..+|.+...++.++ |.....+.+|+.+|.+||+.+.
T Consensus 204 I~~A~~ALeIN~eCA~AyvLLA---EEEa~Ti~~AE~l~k~ALka~e 247 (556)
T KOG3807|consen 204 IKAAYQALEINNECATAYVLLA---EEEATTIVDAERLFKQALKAGE 247 (556)
T ss_pred HHHHHHHHhcCchhhhHHHhhh---hhhhhhHHHHHHHHHHHHHHHH
Confidence 3444567778888877765544 3345678899999999998643
No 310
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=23.88 E-value=48 Score=33.53 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=15.9
Q ss_pred CCCCCccceeeecccccccC
Q 015472 386 KGFTDECTAFLSNINLKASH 405 (406)
Q Consensus 386 ~~~~~~~~~f~~n~~~~~~~ 405 (406)
....+..||||.|||+++++
T Consensus 84 ~~~~~~~~l~V~nlp~~~~~ 103 (457)
T TIGR01622 84 EAERDDRTVFVLQLALKARE 103 (457)
T ss_pred ccccCCcEEEEeCCCCCCCH
Confidence 34456789999999999875
No 311
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=23.81 E-value=9.7e+02 Score=26.12 Aligned_cols=37 Identities=19% Similarity=0.084 Sum_probs=25.8
Q ss_pred HHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 015472 207 ERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRC 243 (406)
Q Consensus 207 e~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ra 243 (406)
|.+....|++-++--..+++..+.|--+.|...|-|.
T Consensus 842 E~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 842 EVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred HHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence 4445556777777777788888888777777766553
No 312
>PF08640 U3_assoc_6: U3 small nucleolar RNA-associated protein 6; InterPro: IPR013949 This entry represents U3 nucleolar RNA-associated proteins which are involved in nucleolar processing of pre-18S ribosomal RNA [].
Probab=23.77 E-value=1.4e+02 Score=22.65 Aligned_cols=35 Identities=26% Similarity=0.437 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHhccchHHHHHHHHHHHHHccc
Q 015472 198 DMVSARGVWERLLKISGAMLEAWQSYISMEIELDH 232 (406)
Q Consensus 198 d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~ 232 (406)
++.+=|.-||..|...+....-++.|+.||+....
T Consensus 24 ~IvkkR~~fEy~L~rr~~~~~Dfl~YI~yE~~L~~ 58 (83)
T PF08640_consen 24 EIVKKRRDFEYKLQRRGKKKSDFLRYIEYEMNLEK 58 (83)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 34555777888888777777789999999987543
No 313
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=23.76 E-value=37 Score=30.68 Aligned_cols=15 Identities=20% Similarity=0.397 Sum_probs=13.6
Q ss_pred ccceeeecccccccC
Q 015472 391 ECTAFLSNINLKASH 405 (406)
Q Consensus 391 ~~~~f~~n~~~~~~~ 405 (406)
.+||||.||++++++
T Consensus 115 ~~~l~v~nL~~~~~~ 129 (306)
T COG0724 115 NNTLFVGNLPYDVTE 129 (306)
T ss_pred CceEEEeCCCCCCCH
Confidence 799999999998875
No 314
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.62 E-value=6.5e+02 Score=23.67 Aligned_cols=89 Identities=9% Similarity=0.042 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhhc-CCc---h-------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHH
Q 015472 155 LDYSLIRETFQRASDYLSEQMK-NTD---G-------LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSY 223 (406)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~-~~~---~-------~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y 223 (406)
+++..+-..|..|+-.+..... ..| . ...+..+|++-....+ ++=.+.+--...|..+|.+...+..-
T Consensus 192 ~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~-e~yevleh~seiL~~~~~nvKA~frR 270 (329)
T KOG0545|consen 192 GRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKE-EYYEVLEHCSEILRHHPGNVKAYFRR 270 (329)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHH-HHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 5667778888888776643221 111 1 1124445555444445 44444444445555555554443333
Q ss_pred HHHHHHcccHHHHHHHHHHHH
Q 015472 224 ISMEIELDHINEARSIYKRCY 244 (406)
Q Consensus 224 ~~~E~~~g~~~~ar~l~~ral 244 (406)
+..-..-=+...|+.=|..+|
T Consensus 271 akAhaa~Wn~~eA~~D~~~vL 291 (329)
T KOG0545|consen 271 AKAHAAVWNEAEAKADLQKVL 291 (329)
T ss_pred HHHHHhhcCHHHHHHHHHHHH
Confidence 332222223444444444444
No 315
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=22.53 E-value=5.3e+02 Score=27.39 Aligned_cols=64 Identities=11% Similarity=0.225 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHc--ccHHHHHHHHHHHHh
Q 015472 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA-MLEAWQSYISMEIEL--DHINEARSIYKRCYS 245 (406)
Q Consensus 181 ~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~-~~~lW~~y~~~E~~~--g~~~~ar~l~~ral~ 245 (406)
.+.+|..|+....+.+ ++..||.-|.++++..+. -+++....++.-..- -+...+|.+|+....
T Consensus 586 ~f~aW~AWGlA~Lk~e-~~aaAR~KFkqafklkgedipdvi~diin~ieGgpp~dVq~Vrem~dhlak 652 (1141)
T KOG1811|consen 586 TFGAWHAWGLACLKAE-NLAAAREKFKQAFKLKGEDIPDVIFDIINLIEGGPPRDVQDVREMLDHLAK 652 (1141)
T ss_pred cccHHHHHHHHHHHhh-hHHHHHHHHHHHhCCCCCccchHHHHHHHhhcCCCcchHHHHHHHHHHhcc
Confidence 3568999999888999 999999999999998654 456666666543222 256677777776554
No 316
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=22.41 E-value=1.2e+03 Score=26.85 Aligned_cols=64 Identities=14% Similarity=0.184 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHhCCCCHH-HHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHh
Q 015472 75 NVVRDVYSRATKNCPWVGE-LWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRIL 146 (406)
Q Consensus 75 e~a~~vyerA~~~~P~~~~-lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~ 146 (406)
+.-+.-|++|+.|...++. .|-....+.+. ..+|..||.........+..++..|.+.|++...
T Consensus 890 D~~L~ry~~AL~hLs~~~~~~~~e~~n~I~k--------h~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~ 954 (1265)
T KOG1920|consen 890 DDYLKRYEDALSHLSECGETYFPECKNYIKK--------HGLYDEALALYKPDSEKQKVIYEAYADHLREELM 954 (1265)
T ss_pred HHHHHHHHHHHHHHHHcCccccHHHHHHHHh--------cccchhhhheeccCHHHHHHHHHHHHHHHHHhcc
Confidence 5567788888887765543 45444444433 2456666665444556666777777777765443
No 317
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=22.35 E-value=1.2e+02 Score=25.28 Aligned_cols=32 Identities=25% Similarity=0.185 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 015472 198 DMVSARGVWERLLKISGAMLEAWQSYISMEIE 229 (406)
Q Consensus 198 d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~ 229 (406)
+.+.|..||+..+..+|++..+++.+++-...
T Consensus 91 e~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS 122 (139)
T PF12583_consen 91 EPENAEQVYEELLEAHPDHLPAHLAMIQNLDS 122 (139)
T ss_dssp -HHHHHHHHHHHHHH-TT-THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCcchHHHHHHHHHccCc
Confidence 57889999999999999999999999975544
No 318
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=21.69 E-value=6e+02 Score=22.90 Aligned_cols=63 Identities=17% Similarity=0.172 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHhc--cc----hHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 183 RLYAYWAHLEQSMGKD-------MVSARGVWERLLKIS--GA----MLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 183 ~l~~~~a~~e~~~~~d-------~~~Ar~ife~al~~~--~~----~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
.+++..|-+....+ + +..|...|+.++... |. ...+-.--+++..+.|+++.|...|.+.+..
T Consensus 119 ~l~LrlAWlyR~~~-~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 119 GLCLRLAWLYRDLG-DEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhhccC-CHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 34555555555555 4 346777777777662 21 1234444457788899999999999999974
No 319
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=21.35 E-value=4.8e+02 Score=22.06 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=42.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHH-hccchHHHHHHHHHH-HHHcccHHHHHHHHHHHHhc
Q 015472 187 YWAHLEQSMGKDMVSARGVWERLLK-ISGAMLEAWQSYISM-EIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 187 ~~a~~e~~~~~d~~~Ar~ife~al~-~~~~~~~lW~~y~~~-E~~~g~~~~ar~l~~ral~~ 246 (406)
.|+-+-.....|+.+...+++..++ .+|..-.-++.|+.+ -.+.++++.++.+.+.++..
T Consensus 39 AwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 39 AWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3443333333367788899999997 466655566666666 44678999999999999974
No 320
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=21.13 E-value=5.3e+02 Score=27.26 Aligned_cols=53 Identities=19% Similarity=0.208 Sum_probs=42.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHH
Q 015472 187 YWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKR 242 (406)
Q Consensus 187 ~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~r 242 (406)
.-|++.-..+ ..++|-.+|++.+.++++ +....|+.-..+.|-..+|+.++..
T Consensus 47 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (578)
T PRK15490 47 KKAEFLHDVN-ETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILKK 99 (578)
T ss_pred HHhhhhhhhh-hhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHHH
Confidence 4455556667 788999999999999998 6677788878888888888888773
No 321
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=20.89 E-value=2.2e+02 Score=21.13 Aligned_cols=17 Identities=18% Similarity=0.208 Sum_probs=13.9
Q ss_pred HcccHHHHHHHHHHHHh
Q 015472 229 ELDHINEARSIYKRCYS 245 (406)
Q Consensus 229 ~~g~~~~ar~l~~ral~ 245 (406)
..|+++.|..+|..|+.
T Consensus 18 ~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 18 QEGRFQEALVCYQEGID 34 (77)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 44888899999998886
No 322
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=20.51 E-value=1.4e+02 Score=30.35 Aligned_cols=66 Identities=9% Similarity=0.013 Sum_probs=39.2
Q ss_pred chHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 015472 179 DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (406)
Q Consensus 179 ~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~ 245 (406)
+.+..++..=+......+ ++..|..=+.+|++..|+....+..-+..-+..+.+..|+..|+....
T Consensus 35 pnca~~~anRa~a~lK~e-~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~ 100 (476)
T KOG0376|consen 35 PNCAIYFANRALAHLKVE-SFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKK 100 (476)
T ss_pred Ccceeeechhhhhheeec-hhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhh
Confidence 333334433333333445 566666666667777776666666666666666777777777777664
Done!