Query 015472
Match_columns 406
No_of_seqs 251 out of 1591
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 13:13:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015472.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015472hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e6h_A MRNA 3'-END-processing 100.0 1.5E-29 5.1E-34 265.7 28.5 241 21-280 300-567 (679)
2 2uy1_A Cleavage stimulation fa 99.9 1.5E-25 5.2E-30 228.1 28.6 260 4-282 67-412 (493)
3 2ond_A Cleavage stimulation fa 99.9 3.4E-25 1.2E-29 211.3 29.2 237 20-278 5-265 (308)
4 4e6h_A MRNA 3'-END-processing 99.9 1.5E-24 5E-29 227.8 29.4 265 3-279 84-459 (679)
5 2ooe_A Cleavage stimulation fa 99.9 3.6E-23 1.2E-27 211.8 29.8 236 22-280 229-489 (530)
6 2uy1_A Cleavage stimulation fa 99.9 7.6E-24 2.6E-28 215.6 19.2 240 4-275 156-444 (493)
7 2ooe_A Cleavage stimulation fa 99.9 1.3E-21 4.3E-26 200.3 28.2 263 3-280 30-382 (530)
8 2ond_A Cleavage stimulation fa 99.9 6E-21 2.1E-25 181.8 25.1 219 4-250 35-273 (308)
9 1w3b_A UDP-N-acetylglucosamine 99.7 1.2E-13 4.1E-18 134.4 31.2 259 4-279 52-330 (388)
10 4eqf_A PEX5-related protein; a 99.7 1.2E-14 4E-19 140.2 23.7 211 23-245 65-309 (365)
11 1w3b_A UDP-N-acetylglucosamine 99.6 3.1E-13 1.1E-17 131.5 30.9 260 3-279 17-296 (388)
12 3hym_B Cell division cycle pro 99.6 2.6E-13 9E-18 127.7 28.1 262 4-274 41-325 (330)
13 2pl2_A Hypothetical conserved 99.6 4.1E-14 1.4E-18 127.5 21.2 199 22-245 4-213 (217)
14 3hym_B Cell division cycle pro 99.6 1.9E-13 6.3E-18 128.8 26.2 232 22-273 21-289 (330)
15 1fch_A Peroxisomal targeting s 99.6 3E-13 1E-17 129.8 25.9 259 7-276 48-352 (368)
16 4eqf_A PEX5-related protein; a 99.6 2.6E-13 8.8E-18 130.8 24.3 248 26-279 34-306 (365)
17 3cv0_A Peroxisome targeting si 99.6 7.5E-13 2.6E-17 124.4 25.5 239 24-274 22-306 (327)
18 2y4t_A DNAJ homolog subfamily 99.6 4.6E-12 1.6E-16 125.1 31.4 239 20-274 23-277 (450)
19 2xpi_A Anaphase-promoting comp 99.6 4.5E-12 1.5E-16 130.0 31.8 242 21-275 303-571 (597)
20 3ieg_A DNAJ homolog subfamily 99.6 7.1E-12 2.4E-16 118.9 30.6 224 22-260 2-228 (359)
21 3ieg_A DNAJ homolog subfamily 99.6 1.6E-11 5.6E-16 116.4 32.8 260 3-279 21-331 (359)
22 1fch_A Peroxisomal targeting s 99.6 1.9E-12 6.5E-17 124.2 26.5 238 36-279 38-310 (368)
23 2xpi_A Anaphase-promoting comp 99.5 3.5E-12 1.2E-16 130.8 29.5 249 26-279 275-541 (597)
24 2y4t_A DNAJ homolog subfamily 99.5 6.4E-12 2.2E-16 124.1 29.9 261 3-279 44-354 (450)
25 2ho1_A Type 4 fimbrial biogene 99.5 9.4E-12 3.2E-16 113.1 27.1 206 19-249 32-240 (252)
26 2vq2_A PILW, putative fimbrial 99.5 1.7E-11 5.8E-16 108.6 28.0 203 20-246 5-211 (225)
27 2q7f_A YRRB protein; TPR, prot 99.5 1.3E-12 4.4E-17 117.7 20.7 218 24-268 24-241 (243)
28 3cv0_A Peroxisome targeting si 99.5 2.3E-11 7.8E-16 114.2 28.9 218 56-279 20-265 (327)
29 2h6f_A Protein farnesyltransfe 99.5 6.1E-12 2.1E-16 123.6 25.8 223 19-267 93-322 (382)
30 3uq3_A Heat shock protein STI1 99.5 3.4E-11 1.2E-15 109.0 28.3 224 21-280 3-233 (258)
31 3vtx_A MAMA; tetratricopeptide 99.5 8E-12 2.7E-16 108.4 22.5 168 21-246 3-170 (184)
32 2h6f_A Protein farnesyltransfe 99.5 1.2E-11 4E-16 121.6 25.3 247 4-275 116-375 (382)
33 4h7y_A Dual specificity protei 99.5 4.9E-13 1.7E-17 111.0 12.7 62 183-246 62-123 (161)
34 3fp2_A TPR repeat-containing p 99.5 6.3E-11 2.2E-15 119.5 29.6 258 3-279 43-403 (537)
35 2pl2_A Hypothetical conserved 99.4 1.7E-11 5.7E-16 110.3 22.5 203 53-272 1-203 (217)
36 1xnf_A Lipoprotein NLPI; TPR, 99.4 8.5E-11 2.9E-15 107.7 27.5 217 4-246 24-244 (275)
37 3u4t_A TPR repeat-containing p 99.4 2.6E-11 8.8E-16 111.3 22.8 227 4-263 22-264 (272)
38 2gw1_A Mitochondrial precursor 99.4 7E-11 2.4E-15 118.2 27.3 244 4-275 208-470 (514)
39 2q7f_A YRRB protein; TPR, prot 99.4 3.6E-11 1.2E-15 108.1 22.4 200 4-231 42-241 (243)
40 3fp2_A TPR repeat-containing p 99.4 1.1E-10 3.8E-15 117.7 26.9 221 3-246 261-491 (537)
41 2gw1_A Mitochondrial precursor 99.4 9.2E-11 3.2E-15 117.3 25.9 230 4-259 256-488 (514)
42 4abn_A Tetratricopeptide repea 99.4 4.1E-11 1.4E-15 120.9 23.1 102 22-126 101-212 (474)
43 3u4t_A TPR repeat-containing p 99.4 5.6E-11 1.9E-15 109.0 21.5 230 24-278 4-245 (272)
44 4h7y_A Dual specificity protei 99.4 6.3E-12 2.1E-16 104.4 12.6 102 21-125 11-126 (161)
45 3mkr_A Coatomer subunit epsilo 99.4 5.5E-10 1.9E-14 105.2 27.8 213 7-246 49-264 (291)
46 3uq3_A Heat shock protein STI1 99.4 2.8E-10 9.5E-15 102.9 24.5 206 4-246 24-236 (258)
47 4gyw_A UDP-N-acetylglucosamine 99.4 4.1E-11 1.4E-15 126.9 21.5 171 18-246 4-174 (723)
48 4abn_A Tetratricopeptide repea 99.3 2.8E-10 9.5E-15 114.8 24.3 214 39-271 84-309 (474)
49 2vq2_A PILW, putative fimbrial 99.3 5.4E-10 1.9E-14 98.7 23.3 200 52-275 3-203 (225)
50 2ho1_A Type 4 fimbrial biogene 99.3 1E-09 3.6E-14 99.3 24.0 203 52-279 31-234 (252)
51 4g1t_A Interferon-induced prot 99.3 3.7E-09 1.3E-13 105.0 28.8 235 4-246 157-401 (472)
52 3as5_A MAMA; tetratricopeptide 99.2 1.2E-09 4.2E-14 93.1 20.1 167 22-246 7-173 (186)
53 4i17_A Hypothetical protein; T 99.2 2.5E-09 8.6E-14 95.8 23.1 197 23-246 7-209 (228)
54 3nf1_A KLC 1, kinesin light ch 99.2 1.9E-09 6.4E-14 100.2 22.3 210 19-245 23-306 (311)
55 3ro2_A PINS homolog, G-protein 99.2 3.2E-09 1.1E-13 99.1 23.2 123 155-280 197-329 (338)
56 4a1s_A PINS, partner of inscut 99.2 7.8E-09 2.7E-13 100.6 26.5 255 21-280 46-329 (411)
57 1xnf_A Lipoprotein NLPI; TPR, 99.2 1.9E-09 6.7E-14 98.5 20.2 207 3-240 61-269 (275)
58 4a1s_A PINS, partner of inscut 99.2 4E-09 1.4E-13 102.7 23.3 262 3-280 66-369 (411)
59 3sf4_A G-protein-signaling mod 99.2 5.3E-09 1.8E-13 100.9 23.5 252 25-280 11-333 (406)
60 3vtx_A MAMA; tetratricopeptide 99.1 3.1E-09 1.1E-13 91.8 18.8 156 3-220 23-178 (184)
61 3ro2_A PINS homolog, G-protein 99.1 6E-08 2E-12 90.3 27.2 252 24-280 6-289 (338)
62 4g1t_A Interferon-induced prot 99.1 2.2E-08 7.6E-13 99.3 25.4 217 34-272 149-390 (472)
63 3qky_A Outer membrane assembly 99.1 3.8E-08 1.3E-12 90.1 23.7 188 21-250 13-227 (261)
64 3edt_B KLC 2, kinesin light ch 99.1 1E-08 3.5E-13 93.5 19.7 194 35-245 13-280 (283)
65 3sf4_A G-protein-signaling mod 99.1 3.6E-08 1.2E-12 95.1 24.0 219 55-279 7-292 (406)
66 4i17_A Hypothetical protein; T 99.0 4.5E-08 1.5E-12 87.6 22.5 190 3-226 25-223 (228)
67 2pzi_A Probable serine/threoni 99.0 2.5E-09 8.6E-14 112.7 15.7 174 34-232 402-583 (681)
68 3urz_A Uncharacterized protein 99.0 2.2E-08 7.6E-13 89.0 19.5 171 23-216 4-190 (208)
69 2r5s_A Uncharacterized protein 99.0 1.1E-09 3.8E-14 94.6 10.3 78 161-246 94-173 (176)
70 3mkr_A Coatomer subunit epsilo 99.0 1.9E-07 6.4E-12 87.8 26.4 220 19-271 29-251 (291)
71 1ouv_A Conserved hypothetical 99.0 2.1E-07 7.2E-12 85.5 26.1 196 21-246 4-215 (273)
72 4gyw_A UDP-N-acetylglucosamine 99.0 1.9E-08 6.4E-13 106.5 20.1 168 52-280 4-171 (723)
73 3dra_A Protein farnesyltransfe 99.0 7.8E-08 2.7E-12 91.2 22.1 97 28-124 37-141 (306)
74 1ouv_A Conserved hypothetical 99.0 4.4E-07 1.5E-11 83.4 25.7 208 4-246 25-251 (273)
75 3qou_A Protein YBBN; thioredox 98.9 2.7E-08 9.4E-13 93.2 17.4 170 53-246 113-284 (287)
76 4ga2_A E3 SUMO-protein ligase 98.9 5.4E-09 1.8E-13 88.2 10.2 140 35-232 9-149 (150)
77 4gco_A Protein STI-1; structur 98.9 5.2E-08 1.8E-12 79.6 15.8 110 18-129 8-117 (126)
78 2vsy_A XCC0866; transferase, g 98.9 3.7E-08 1.3E-12 101.1 18.0 165 36-224 2-169 (568)
79 2yhc_A BAMD, UPF0169 lipoprote 98.9 6.8E-07 2.3E-11 80.1 23.4 182 25-246 6-213 (225)
80 3gyz_A Chaperone protein IPGC; 98.9 4.6E-08 1.6E-12 82.9 13.8 105 19-125 32-136 (151)
81 3nf1_A KLC 1, kinesin light ch 98.8 5.5E-07 1.9E-11 83.3 22.2 177 53-246 23-224 (311)
82 2pzi_A Probable serine/threoni 98.8 8E-08 2.7E-12 101.2 18.4 166 53-246 390-563 (681)
83 3as5_A MAMA; tetratricopeptide 98.8 1.7E-07 5.8E-12 79.5 17.0 102 21-124 40-141 (186)
84 3dra_A Protein farnesyltransfe 98.8 1.2E-06 4.2E-11 83.0 24.2 232 4-259 52-298 (306)
85 4ga2_A E3 SUMO-protein ligase 98.8 4.8E-08 1.6E-12 82.2 12.4 126 1-128 6-135 (150)
86 2vgx_A Chaperone SYCD; alterna 98.8 4.8E-08 1.6E-12 82.2 12.4 116 3-124 5-120 (148)
87 3edt_B KLC 2, kinesin light ch 98.8 9.2E-07 3.1E-11 80.3 20.2 193 3-212 19-281 (283)
88 2c2l_A CHIP, carboxy terminus 98.8 6.6E-08 2.3E-12 90.3 12.7 192 22-245 3-198 (281)
89 3ulq_A Response regulator aspa 98.7 1.9E-06 6.6E-11 83.3 22.7 223 4-246 122-368 (383)
90 3q7a_A Farnesyltransferase alp 98.7 3.7E-06 1.3E-10 80.9 24.1 194 24-232 55-257 (349)
91 2fo7_A Synthetic consensus TPR 98.7 1.3E-06 4.4E-11 69.6 17.7 93 26-120 4-96 (136)
92 2xcb_A PCRH, regulatory protei 98.7 7.1E-07 2.4E-11 73.9 16.4 105 19-125 14-118 (142)
93 3dss_A Geranylgeranyl transfer 98.7 2E-05 6.7E-10 75.3 28.1 191 33-246 39-267 (331)
94 3qky_A Outer membrane assembly 98.7 1.7E-06 5.9E-11 78.9 19.8 183 3-223 33-235 (261)
95 3dss_A Geranylgeranyl transfer 98.7 8.6E-06 2.9E-10 77.8 24.5 228 5-246 50-304 (331)
96 1qqe_A Vesicular transport pro 98.7 1.8E-06 6E-11 80.8 19.2 208 25-245 39-268 (292)
97 2vsy_A XCC0866; transferase, g 98.6 5.6E-07 1.9E-11 92.2 16.9 150 4-170 8-157 (568)
98 1p5q_A FKBP52, FK506-binding p 98.6 8.1E-08 2.8E-12 92.2 9.9 61 184-245 198-258 (336)
99 3qou_A Protein YBBN; thioredox 98.6 8.4E-07 2.9E-11 82.9 16.6 169 22-212 116-284 (287)
100 2e2e_A Formate-dependent nitri 98.6 3.9E-07 1.3E-11 78.0 13.1 146 36-245 23-170 (177)
101 3sz7_A HSC70 cochaperone (SGT) 98.6 7.1E-07 2.4E-11 75.6 14.2 104 20-125 8-111 (164)
102 2e2e_A Formate-dependent nitri 98.6 7.2E-07 2.5E-11 76.3 14.3 116 4-125 29-147 (177)
103 1qqe_A Vesicular transport pro 98.6 5E-06 1.7E-10 77.6 21.3 209 38-280 32-263 (292)
104 3upv_A Heat shock protein STI1 98.6 1E-06 3.6E-11 70.9 14.4 101 21-123 2-102 (126)
105 3urz_A Uncharacterized protein 98.6 4.5E-06 1.5E-10 73.8 19.6 169 56-249 3-188 (208)
106 3ulq_A Response regulator aspa 98.6 5.6E-06 1.9E-10 80.0 22.0 233 29-279 109-364 (383)
107 4f3v_A ESX-1 secretion system 98.6 5.4E-07 1.9E-11 84.1 13.9 197 35-260 18-247 (282)
108 4gco_A Protein STI-1; structur 98.6 8.5E-07 2.9E-11 72.3 13.4 121 48-226 4-124 (126)
109 2r5s_A Uncharacterized protein 98.6 5.2E-07 1.8E-11 77.6 12.5 167 24-212 7-173 (176)
110 1elw_A TPR1-domain of HOP; HOP 98.6 2.7E-06 9.2E-11 66.3 15.6 104 22-127 3-106 (118)
111 2vgx_A Chaperone SYCD; alterna 98.6 3.1E-07 1.1E-11 77.1 10.2 79 44-124 8-86 (148)
112 1a17_A Serine/threonine protei 98.5 1.1E-05 3.8E-10 67.2 19.6 105 22-128 12-116 (166)
113 2xcb_A PCRH, regulatory protei 98.5 4.6E-07 1.6E-11 75.1 10.4 79 44-124 5-83 (142)
114 1hxi_A PEX5, peroxisome target 98.5 9.2E-07 3.1E-11 71.5 11.8 99 25-125 19-117 (121)
115 2vyi_A SGTA protein; chaperone 98.5 6.5E-06 2.2E-10 65.3 16.4 106 20-127 9-114 (131)
116 2fo7_A Synthetic consensus TPR 98.5 3.6E-06 1.2E-10 66.9 14.8 115 4-124 20-134 (136)
117 2lni_A Stress-induced-phosphop 98.5 3.1E-06 1.1E-10 67.7 14.5 104 20-125 13-116 (133)
118 1hz4_A MALT regulatory protein 98.5 2.5E-05 8.7E-10 74.8 23.4 224 4-246 33-282 (373)
119 3q49_B STIP1 homology and U bo 98.5 1.8E-06 6.2E-11 70.0 12.7 102 21-124 7-108 (137)
120 2kck_A TPR repeat; tetratricop 98.5 9.5E-07 3.3E-11 68.4 10.4 102 22-125 5-109 (112)
121 2wvi_A Mitotic checkpoint seri 98.5 5.4E-06 1.9E-10 70.4 15.6 110 4-123 2-126 (164)
122 2yhc_A BAMD, UPF0169 lipoprote 98.5 1.2E-05 4.3E-10 71.7 18.6 176 3-216 22-217 (225)
123 1na0_A Designed protein CTPR3; 98.5 9.9E-06 3.4E-10 63.6 15.9 104 23-128 9-112 (125)
124 1a17_A Serine/threonine protei 98.4 1.2E-05 4.2E-10 66.9 17.2 129 59-245 15-145 (166)
125 2xm6_A Protein corresponding t 98.4 0.00039 1.3E-08 69.5 30.8 83 36-122 92-180 (490)
126 3gyz_A Chaperone protein IPGC; 98.4 2.3E-06 7.7E-11 72.4 12.0 84 155-246 50-133 (151)
127 4a1g_A Mitotic checkpoint seri 98.4 5.9E-06 2E-10 69.3 14.0 110 3-123 8-131 (152)
128 3q7a_A Farnesyltransferase alp 98.4 9.6E-06 3.3E-10 78.0 17.5 234 4-260 73-343 (349)
129 3q15_A PSP28, response regulat 98.4 3.2E-05 1.1E-09 74.6 21.1 223 4-246 120-365 (378)
130 3q15_A PSP28, response regulat 98.4 9.1E-05 3.1E-09 71.3 24.4 234 30-286 108-368 (378)
131 3esl_A Checkpoint serine/threo 98.4 1.8E-05 6.2E-10 69.2 17.0 116 3-123 10-145 (202)
132 2lni_A Stress-induced-phosphop 98.4 1.2E-05 4.1E-10 64.2 14.4 120 54-231 13-132 (133)
133 1dce_A Protein (RAB geranylger 98.4 1.7E-05 5.9E-10 81.5 19.1 177 33-232 38-241 (567)
134 1hz4_A MALT regulatory protein 98.3 0.00025 8.4E-09 67.8 25.8 234 29-280 20-279 (373)
135 2qfc_A PLCR protein; TPR, HTH, 98.3 7.9E-05 2.7E-09 69.2 21.4 175 56-246 74-266 (293)
136 2ifu_A Gamma-SNAP; membrane fu 98.3 6.7E-05 2.3E-09 70.4 21.0 207 37-275 30-253 (307)
137 2xm6_A Protein corresponding t 98.3 0.00082 2.8E-08 67.1 30.1 110 4-123 98-217 (490)
138 3u3w_A Transcriptional activat 98.3 0.00019 6.6E-09 66.6 23.7 160 72-246 89-266 (293)
139 2dba_A Smooth muscle cell asso 98.3 1.2E-05 4.3E-10 65.5 13.7 105 20-126 25-132 (148)
140 1elr_A TPR2A-domain of HOP; HO 98.3 1.3E-05 4.6E-10 63.5 13.3 103 21-125 2-111 (131)
141 3upv_A Heat shock protein STI1 98.3 2.3E-05 7.8E-10 62.8 14.7 67 56-124 3-69 (126)
142 1p5q_A FKBP52, FK506-binding p 98.3 4.3E-05 1.5E-09 73.0 19.0 109 20-130 144-267 (336)
143 4gcn_A Protein STI-1; structur 98.3 1.1E-05 3.7E-10 65.6 12.2 102 21-124 6-114 (127)
144 4aez_C MAD3, mitotic spindle c 98.2 1.1E-05 3.9E-10 71.6 12.6 112 3-123 53-180 (223)
145 2fbn_A 70 kDa peptidylprolyl i 98.2 2.6E-06 8.9E-11 74.4 8.3 55 182-237 122-176 (198)
146 3q49_B STIP1 homology and U bo 98.2 4.3E-05 1.5E-09 61.7 15.0 70 52-123 4-73 (137)
147 3u64_A Protein TP_0956; tetrat 98.2 0.00036 1.2E-08 64.8 22.2 186 42-246 51-269 (301)
148 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.7E-06 5.8E-11 86.6 6.9 85 184-272 319-403 (457)
149 1hh8_A P67PHOX, NCF-2, neutrop 98.2 0.00013 4.4E-09 63.6 18.3 146 26-216 9-154 (213)
150 1na0_A Designed protein CTPR3; 98.2 0.0001 3.6E-09 57.5 15.8 45 184-229 79-123 (125)
151 1elw_A TPR1-domain of HOP; HOP 98.2 3.3E-05 1.1E-09 59.9 12.3 98 155-263 18-115 (118)
152 2hr2_A Hypothetical protein; a 98.1 2.7E-05 9.3E-10 66.1 12.1 101 22-124 10-133 (159)
153 2fbn_A 70 kDa peptidylprolyl i 98.1 8.7E-05 3E-09 64.5 15.9 104 22-127 37-156 (198)
154 1hh8_A P67PHOX, NCF-2, neutrop 98.1 4.2E-05 1.4E-09 66.8 13.7 102 22-125 36-153 (213)
155 3sz7_A HSC70 cochaperone (SGT) 98.1 3E-05 1E-09 65.4 12.3 84 155-246 25-108 (164)
156 3rkv_A Putative peptidylprolyl 98.1 9.9E-05 3.4E-09 61.9 15.3 104 22-127 10-131 (162)
157 4f3v_A ESX-1 secretion system 98.1 9.3E-06 3.2E-10 75.7 9.4 197 3-226 24-250 (282)
158 2vyi_A SGTA protein; chaperone 98.1 6.1E-05 2.1E-09 59.4 13.1 104 155-269 26-129 (131)
159 1zu2_A Mitochondrial import re 98.1 3E-05 1E-09 65.8 11.3 88 38-125 17-123 (158)
160 3k9i_A BH0479 protein; putativ 98.1 3.3E-05 1.1E-09 61.3 11.0 88 36-125 3-93 (117)
161 2xev_A YBGF; tetratricopeptide 98.1 0.0001 3.6E-09 58.6 14.2 98 27-126 6-109 (129)
162 2ifu_A Gamma-SNAP; membrane fu 98.1 0.00061 2.1E-08 63.7 21.4 178 23-216 36-227 (307)
163 3rjv_A Putative SEL1 repeat pr 98.1 0.00028 9.6E-09 62.4 18.1 177 42-246 5-197 (212)
164 2dba_A Smooth muscle cell asso 98.1 5.9E-05 2E-09 61.3 12.7 101 155-266 42-145 (148)
165 2qfc_A PLCR protein; TPR, HTH, 98.0 0.0019 6.5E-08 59.7 24.3 174 23-213 75-267 (293)
166 2c2l_A CHIP, carboxy terminus 98.0 0.00033 1.1E-08 64.9 18.8 164 54-246 1-164 (281)
167 1hxi_A PEX5, peroxisome target 98.0 2.5E-05 8.6E-10 62.8 9.5 84 155-246 31-114 (121)
168 1zu2_A Mitochondrial import re 98.0 2.9E-05 9.8E-10 65.9 10.1 90 4-97 21-130 (158)
169 3k9i_A BH0479 protein; putativ 98.0 2.7E-05 9.2E-10 61.8 9.3 87 158-250 7-93 (117)
170 2kat_A Uncharacterized protein 98.0 4E-05 1.4E-09 60.4 10.0 82 41-124 3-84 (115)
171 2if4_A ATFKBP42; FKBP-like, al 98.0 2.6E-05 8.8E-10 74.7 10.1 99 22-122 178-293 (338)
172 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00012 4E-09 73.1 14.8 104 21-126 266-384 (457)
173 3gw4_A Uncharacterized protein 97.9 0.00053 1.8E-08 58.9 17.2 139 91-246 25-176 (203)
174 2kat_A Uncharacterized protein 97.9 8.6E-05 2.9E-09 58.4 10.4 68 178-246 15-82 (115)
175 3rjv_A Putative SEL1 repeat pr 97.9 0.0021 7.3E-08 56.6 20.7 182 4-214 5-199 (212)
176 3e4b_A ALGK; tetratricopeptide 97.9 0.0039 1.3E-07 61.8 24.8 82 38-122 194-280 (452)
177 2kck_A TPR repeat; tetratricop 97.9 7E-05 2.4E-09 57.5 9.3 83 156-246 21-106 (112)
178 2if4_A ATFKBP42; FKBP-like, al 97.9 3.7E-05 1.3E-09 73.6 9.3 117 3-124 197-330 (338)
179 2xev_A YBGF; tetratricopeptide 97.9 0.00022 7.4E-09 56.7 12.5 103 155-265 16-121 (129)
180 1xi4_A Clathrin heavy chain; a 97.9 0.0019 6.6E-08 71.6 23.3 190 35-246 1088-1309(1630)
181 1na3_A Designed protein CTPR2; 97.8 0.00027 9.3E-09 52.3 12.0 81 21-102 7-87 (91)
182 1dce_A Protein (RAB geranylger 97.8 0.00091 3.1E-08 68.6 19.5 165 73-259 44-231 (567)
183 3esl_A Checkpoint serine/threo 97.8 0.0013 4.5E-08 57.4 17.1 102 162-267 58-163 (202)
184 3gw4_A Uncharacterized protein 97.8 0.0019 6.6E-08 55.2 18.5 164 36-214 5-178 (203)
185 4a1g_A Mitotic checkpoint seri 97.8 0.00072 2.5E-08 56.5 14.6 82 176-266 65-148 (152)
186 3rkv_A Putative peptidylprolyl 97.8 0.00049 1.7E-08 57.6 13.9 91 155-246 25-126 (162)
187 3mv2_B Coatomer subunit epsilo 97.8 0.0062 2.1E-07 57.3 22.1 209 23-266 71-298 (310)
188 4gcn_A Protein STI-1; structur 97.7 0.00031 1.1E-08 56.7 11.6 84 155-246 22-112 (127)
189 1elr_A TPR2A-domain of HOP; HO 97.7 0.00097 3.3E-08 52.3 14.2 122 56-229 3-124 (131)
190 3ro3_A PINS homolog, G-protein 97.7 0.0027 9.2E-08 51.5 17.1 140 94-246 11-158 (164)
191 3ma5_A Tetratricopeptide repea 97.7 0.00015 5.1E-09 55.9 8.5 67 179-246 4-70 (100)
192 1na3_A Designed protein CTPR2; 97.7 0.00084 2.9E-08 49.6 12.3 65 181-246 8-72 (91)
193 2l6j_A TPR repeat-containing p 97.7 0.0005 1.7E-08 52.9 11.3 78 22-100 3-86 (111)
194 1wao_1 Serine/threonine protei 97.7 8.4E-05 2.9E-09 74.7 8.3 85 36-122 19-103 (477)
195 1ihg_A Cyclophilin 40; ppiase 97.7 0.00038 1.3E-08 67.4 12.6 102 23-126 223-340 (370)
196 1xi4_A Clathrin heavy chain; a 97.6 0.014 5E-07 64.8 25.7 239 7-272 1091-1373(1630)
197 3e4b_A ALGK; tetratricopeptide 97.6 0.0085 2.9E-07 59.3 22.5 177 40-246 162-351 (452)
198 2hr2_A Hypothetical protein; a 97.6 0.00075 2.6E-08 57.2 12.1 91 155-246 25-131 (159)
199 4b4t_Q 26S proteasome regulato 97.6 0.0074 2.5E-07 58.4 21.2 195 34-246 15-245 (434)
200 1wao_1 Serine/threonine protei 97.5 0.00047 1.6E-08 69.2 11.8 113 3-120 24-137 (477)
201 3ma5_A Tetratricopeptide repea 97.5 0.00013 4.6E-09 56.2 6.1 68 53-122 3-70 (100)
202 3u64_A Protein TP_0956; tetrat 97.5 0.00094 3.2E-08 62.0 12.4 118 7-125 139-272 (301)
203 1ihg_A Cyclophilin 40; ppiase 97.5 0.00037 1.3E-08 67.5 10.2 98 4-102 242-351 (370)
204 2kc7_A BFR218_protein; tetratr 97.5 0.0003 1E-08 53.4 7.1 64 32-96 9-73 (99)
205 4aez_C MAD3, mitotic spindle c 97.4 0.0016 5.6E-08 57.8 12.2 97 160-265 96-196 (223)
206 2l6j_A TPR repeat-containing p 97.4 0.0022 7.4E-08 49.1 11.4 64 182-246 4-67 (111)
207 4b4t_Q 26S proteasome regulato 97.3 0.019 6.4E-07 55.5 20.1 163 72-246 18-204 (434)
208 3mv2_B Coatomer subunit epsilo 97.2 0.033 1.1E-06 52.3 19.8 190 6-219 87-289 (310)
209 3ly7_A Transcriptional activat 97.2 0.01 3.5E-07 57.1 16.2 92 180-278 275-366 (372)
210 3ro3_A PINS homolog, G-protein 97.2 0.0093 3.2E-07 48.1 13.4 123 155-279 23-154 (164)
211 2wvi_A Mitotic checkpoint seri 97.1 0.0068 2.3E-07 51.3 12.5 98 161-267 43-144 (164)
212 3u3w_A Transcriptional activat 97.1 0.026 8.9E-07 51.8 17.4 179 19-213 71-267 (293)
213 4g26_A Pentatricopeptide repea 97.1 0.053 1.8E-06 54.5 20.8 166 25-212 28-204 (501)
214 1b89_A Protein (clathrin heavy 97.1 0.002 6.9E-08 63.6 9.8 196 25-240 96-305 (449)
215 2kc7_A BFR218_protein; tetratr 97.1 0.0084 2.9E-07 45.0 11.5 57 189-246 7-64 (99)
216 3bee_A Putative YFRE protein; 97.0 0.0058 2E-07 46.6 10.0 72 53-125 2-75 (93)
217 1b89_A Protein (clathrin heavy 97.0 0.0007 2.4E-08 66.8 5.7 205 35-273 15-226 (449)
218 3bee_A Putative YFRE protein; 96.9 0.0082 2.8E-07 45.7 9.9 68 179-246 3-72 (93)
219 3n71_A Histone lysine methyltr 96.7 0.028 9.7E-07 56.4 15.3 91 155-246 323-422 (490)
220 3n71_A Histone lysine methyltr 96.7 0.034 1.2E-06 55.8 15.9 127 105-246 321-464 (490)
221 4g26_A Pentatricopeptide repea 96.6 0.24 8.2E-06 49.7 20.8 171 94-279 28-200 (501)
222 3qww_A SET and MYND domain-con 96.5 0.017 5.8E-07 57.1 11.8 91 155-246 312-411 (433)
223 3ly7_A Transcriptional activat 96.5 0.2 6.8E-06 48.1 18.6 150 46-218 183-345 (372)
224 3qwp_A SET and MYND domain-con 95.3 0.075 2.6E-06 52.3 10.3 90 156-246 302-400 (429)
225 1klx_A Cysteine rich protein B 94.5 0.63 2.2E-05 37.4 12.3 60 184-246 59-126 (138)
226 3qww_A SET and MYND domain-con 94.5 0.54 1.8E-05 46.2 13.9 93 106-213 311-412 (433)
227 2v5f_A Prolyl 4-hydroxylase su 94.0 0.9 3.1E-05 34.5 11.5 59 187-246 10-75 (104)
228 2v5f_A Prolyl 4-hydroxylase su 94.0 0.48 1.6E-05 36.1 9.9 72 155-227 19-90 (104)
229 1pc2_A Mitochondria fission pr 93.5 0.48 1.7E-05 39.4 9.5 86 39-125 14-103 (152)
230 1pc2_A Mitochondria fission pr 93.0 0.95 3.2E-05 37.6 10.6 83 157-246 14-100 (152)
231 3qwp_A SET and MYND domain-con 92.7 2.2 7.6E-05 41.6 14.8 92 106-212 300-400 (429)
232 1klx_A Cysteine rich protein B 92.1 2.1 7.2E-05 34.2 11.6 107 155-279 9-119 (138)
233 4gns_B Protein CSD3, chitin bi 83.7 11 0.00038 39.5 13.0 59 184-243 339-397 (754)
234 2ff4_A Probable regulatory pro 81.4 14 0.0005 35.2 12.1 52 33-85 181-232 (388)
235 2khc_A Testis-specific RNP-typ 78.8 1.5 5.1E-05 34.0 3.4 22 384-405 33-54 (118)
236 2cpx_A Hypothetical protein FL 77.6 1.8 6.1E-05 33.4 3.5 19 387-405 21-39 (115)
237 4fxv_A ELAV-like protein 1; RN 76.7 0.9 3.1E-05 34.5 1.5 18 388-405 16-33 (99)
238 2cq4_A RNA binding motif prote 76.0 0.91 3.1E-05 35.1 1.3 20 386-405 20-39 (114)
239 2err_A Ataxin-2-binding protei 74.0 1.4 4.9E-05 33.9 2.0 22 384-405 22-43 (109)
240 2la4_A Nuclear and cytoplasmic 74.0 0.46 1.6E-05 36.0 -0.9 17 389-405 25-41 (101)
241 2jrs_A RNA-binding protein 39; 73.9 1.8 6.1E-05 33.3 2.5 22 384-405 19-40 (108)
242 2hgm_A HNRPF protein, heteroge 73.5 1.5 5.1E-05 35.1 2.0 17 389-405 40-56 (126)
243 2hgl_A HNRPF protein, heteroge 73.1 1.2 4E-05 36.2 1.3 17 389-405 42-58 (136)
244 1x4a_A Splicing factor, argini 72.6 1.9 6.4E-05 33.0 2.4 18 388-405 19-36 (109)
245 1x4f_A Matrin 3; structural ge 72.2 3.6 0.00012 32.1 3.9 18 388-405 22-40 (112)
246 2cpz_A CUG triplet repeat RNA- 72.0 1.9 6.6E-05 33.3 2.3 18 388-405 22-39 (115)
247 2rs2_A Musashi-1, RNA-binding 72.0 1.2 4E-05 34.4 1.0 21 385-405 19-39 (109)
248 2ff4_A Probable regulatory pro 71.8 14 0.00049 35.2 9.0 58 187-245 176-233 (388)
249 2ad9_A Polypyrimidine tract-bi 71.5 2 6.8E-05 34.0 2.3 19 387-405 27-45 (119)
250 1p27_B RNA-binding protein 8A; 71.0 1.6 5.6E-05 33.0 1.7 18 388-405 20-37 (106)
251 1h2v_Z 20 kDa nuclear CAP bind 69.7 1.8 6.3E-05 35.5 1.8 20 386-405 34-53 (156)
252 1x5o_A RNA binding motif, sing 69.7 2.9 9.8E-05 32.1 2.9 18 388-405 22-39 (114)
253 2e5j_A Methenyltetrahydrofolat 69.2 3.6 0.00012 30.6 3.3 17 389-405 17-33 (97)
254 1oo0_B CG8781-PA, drosophila Y 68.9 1.9 6.7E-05 32.9 1.7 17 389-405 24-40 (110)
255 3ulh_A THO complex subunit 4; 68.5 2 6.7E-05 32.6 1.6 18 388-405 26-43 (107)
256 2jvo_A Nucleolar protein 3; nu 68.2 1.8 6E-05 33.3 1.3 20 386-405 26-45 (108)
257 2j76_E EIF-4B, EIF4B, eukaryot 67.1 1.9 6.5E-05 32.4 1.3 18 388-405 16-33 (100)
258 3ukx_C Bimax2 peptide; arm rep 65.1 3.9 0.00013 22.2 1.9 19 316-335 8-26 (28)
259 3spa_A Mtrpol, DNA-directed RN 65.0 78 0.0027 34.5 13.4 100 24-124 128-232 (1134)
260 3egn_A RNA-binding protein 40; 64.9 2.5 8.6E-05 34.1 1.7 18 388-405 42-59 (143)
261 2hgn_A Heterogeneous nuclear r 64.8 1.8 6.3E-05 35.2 0.8 17 389-405 44-60 (139)
262 1x4b_A Heterogeneous nuclear r 64.2 1.4 4.8E-05 34.1 0.0 19 387-405 23-41 (116)
263 1nzn_A CGI-135 protein, fissio 63.3 54 0.0018 25.9 9.7 61 186-246 39-103 (126)
264 2xnq_A Nuclear polyadenylated 62.6 2.8 9.6E-05 31.4 1.5 21 385-405 16-37 (97)
265 1wf1_A RNA-binding protein RAL 62.3 3.8 0.00013 31.2 2.2 17 389-405 25-42 (110)
266 1u6f_A Tcubp1, RNA-binding pro 62.3 3.7 0.00013 32.7 2.3 18 388-405 39-56 (139)
267 2ku7_A MLL1 PHD3-CYP33 RRM chi 61.5 6.2 0.00021 31.3 3.5 20 386-405 58-77 (140)
268 1x4g_A Nucleolysin TIAR; struc 61.3 3 0.0001 31.8 1.4 16 390-405 24-39 (109)
269 2lea_A Serine/arginine-rich sp 60.9 3.1 0.0001 33.4 1.5 18 388-405 44-61 (135)
270 2kxn_B Transformer-2 protein h 60.2 3.9 0.00013 32.5 2.0 18 388-405 43-60 (129)
271 4b4t_R RPN7, 26S proteasome re 59.6 25 0.00084 34.0 8.1 63 183-246 132-197 (429)
272 1nzn_A CGI-135 protein, fissio 59.5 47 0.0016 26.3 8.2 86 38-125 16-106 (126)
273 2i2y_A Fusion protein consists 59.5 6 0.0002 32.0 3.1 21 385-405 67-87 (150)
274 2kt5_A RNA and export factor-b 59.4 4.3 0.00015 31.7 2.1 19 387-405 31-49 (124)
275 2jvr_A Nucleolar protein 3; RN 59.3 3.2 0.00011 32.2 1.3 15 391-405 28-42 (111)
276 3n9u_C Cleavage and polyadenyl 58.1 3 0.0001 34.5 1.0 16 390-405 54-69 (156)
277 3r27_A HnRNP L, heterogeneous 57.9 4 0.00014 31.1 1.6 15 391-405 21-35 (100)
278 1pjn_A Histone-binding protein 57.2 5.8 0.0002 22.0 1.7 21 316-337 2-22 (26)
279 1rk8_A CG8781-PA, CG8781-PA pr 54.9 4.7 0.00016 33.4 1.7 17 389-405 70-86 (165)
280 2jwn_A Embryonic polyadenylate 54.3 2.5 8.5E-05 33.1 -0.2 17 389-405 34-50 (124)
281 2f3j_A RNA and export factor b 54.3 5.4 0.00018 33.7 2.0 19 387-405 84-102 (177)
282 2kn4_A Immunoglobulin G-bindin 54.0 6.1 0.00021 32.2 2.2 18 388-405 67-84 (158)
283 3ukw_C Bimax1 peptide; arm rep 53.7 6.1 0.00021 21.5 1.4 14 322-335 13-26 (28)
284 2a3j_A U1 small nuclear ribonu 53.4 5.7 0.00019 31.6 1.9 15 391-405 29-43 (127)
285 3ffl_A Anaphase-promoting comp 53.3 43 0.0015 27.9 7.3 59 187-246 25-92 (167)
286 3q2s_C Cleavage and polyadenyl 48.1 5.4 0.00018 35.2 1.0 16 390-405 67-82 (229)
287 4b4t_P 26S proteasome regulato 46.4 1.1E+02 0.0036 29.6 10.2 67 181-248 136-208 (445)
288 3mkq_B Coatomer subunit alpha; 45.8 52 0.0018 27.7 6.8 22 184-206 36-57 (177)
289 3o48_A Mitochondria fission 1 44.7 1.2E+02 0.004 24.2 8.3 60 187-246 45-107 (134)
290 3spa_A Mtrpol, DNA-directed RN 44.6 2.6E+02 0.0088 30.5 13.2 82 184-269 129-215 (1134)
291 1ya0_A SMG-7 transcript varian 40.2 1E+02 0.0035 30.4 9.0 62 184-246 154-215 (497)
292 3md3_A Nuclear and cytoplasmic 40.0 14 0.00049 29.6 2.4 18 388-405 84-101 (166)
293 3o48_A Mitochondria fission 1 39.0 98 0.0033 24.7 7.0 33 185-218 81-113 (134)
294 1y8m_A FIS1; mitochondria, unk 38.3 1.5E+02 0.005 24.0 8.0 61 186-246 43-106 (144)
295 3ffl_A Anaphase-promoting comp 38.0 1.7E+02 0.0059 24.2 8.7 60 182-242 63-147 (167)
296 2voo_A Lupus LA protein; RNA-b 37.7 7.5 0.00026 33.2 0.2 15 391-405 109-123 (193)
297 3pgw_S U1-70K; protein-RNA com 37.2 13 0.00046 36.2 2.0 16 390-405 101-116 (437)
298 1ya0_A SMG-7 transcript varian 36.7 1.6E+02 0.0056 28.9 9.9 51 73-124 167-217 (497)
299 1fje_B Nucleolin RBD12, protei 35.8 16 0.00056 29.8 2.1 17 389-405 97-113 (175)
300 4gns_B Protein CSD3, chitin bi 34.5 2.2E+02 0.0076 29.6 10.8 60 58-119 338-397 (754)
301 4b4t_R RPN7, 26S proteasome re 33.9 60 0.002 31.2 6.1 63 218-280 132-194 (429)
302 3ul0_C Nuclear CAP-binding pro 33.2 29 0.001 18.6 2.0 20 318-337 5-24 (26)
303 1zbp_A Hypothetical protein VP 30.9 2E+02 0.0067 25.9 8.4 39 177-216 26-64 (273)
304 1zbp_A Hypothetical protein VP 30.4 2.8E+02 0.0096 24.9 9.4 56 35-91 9-64 (273)
305 2w2u_A Hypothetical P60 katani 30.0 1.5E+02 0.0053 21.2 8.3 17 229-245 31-47 (83)
306 3nmr_A Cugbp ELAV-like family 29.8 18 0.00062 29.3 1.4 16 390-405 94-109 (175)
307 3tyt_A Heterogeneous nuclear r 29.6 18 0.00062 31.0 1.4 16 390-405 122-137 (205)
308 2v6y_A AAA family ATPase, P60 27.9 1.7E+02 0.0057 21.0 7.5 17 229-245 23-39 (83)
309 1l3k_A Heterogeneous nuclear r 27.6 20 0.00067 29.8 1.2 16 390-405 103-118 (196)
310 2yh0_A Splicing factor U2AF 65 27.6 21 0.0007 29.8 1.3 17 389-405 112-128 (198)
311 3mkq_A Coatomer beta'-subunit; 27.0 4.1E+02 0.014 26.7 11.6 27 182-209 681-707 (814)
312 4f25_A Polyadenylate-binding p 26.5 16 0.00055 27.9 0.4 15 391-405 97-111 (115)
313 2g4b_A Splicing factor U2AF 65 25.9 32 0.0011 27.7 2.2 15 391-405 94-108 (172)
314 1b7f_A Protein (SXL-lethal pro 25.3 34 0.0012 27.4 2.3 16 390-405 88-103 (168)
315 2qfj_A FBP-interacting repress 24.5 25 0.00087 29.7 1.3 15 391-405 125-139 (216)
316 1qm9_A Polypyrimidine tract-bi 23.3 37 0.0013 28.3 2.2 18 388-405 117-134 (198)
317 1sjr_A Polypyrimidine tract-bi 23.0 24 0.00081 29.4 0.8 15 391-405 46-60 (164)
318 3mkq_A Coatomer beta'-subunit; 22.8 2.5E+02 0.0085 28.5 8.9 13 230-242 749-761 (814)
319 2cqq_A RSGI RUH-037, DNAJ homo 22.4 1.6E+02 0.0056 20.5 5.1 38 79-119 17-55 (72)
320 2o8p_A 14-3-3 domain containin 22.1 2.6E+02 0.009 24.3 7.4 55 157-211 141-196 (227)
321 2cjk_A Nuclear polyadenylated 21.1 25 0.00087 28.2 0.6 15 391-405 87-101 (167)
322 2npm_A 14-3-3 domain containin 21.0 4.4E+02 0.015 23.4 11.7 52 159-211 174-226 (260)
323 3pgw_A U1-A; protein-RNA compl 20.5 42 0.0014 29.8 2.1 19 387-405 203-221 (282)
No 1
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.97 E-value=1.5e-29 Score=265.66 Aligned_cols=241 Identities=15% Similarity=0.208 Sum_probs=198.2
Q ss_pred hhHHHHHHHHHHHHhcC-------ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHH-HHHHHHHHhCCCCH
Q 015472 21 EKFQQYMIYLKYEQSSG-------DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVR-DVYSRATKNCPWVG 92 (406)
Q Consensus 21 ~~~~~w~~Yi~~E~~~g-------~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~-~vyerA~~~~P~~~ 92 (406)
..+.+|..|++||+..+ ...+++.+|++||..+|.++++|+.|+.|+...+ ..+.++ .+|+||+.+||.+.
T Consensus 300 ~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~-~~~~a~r~il~rAi~~~P~s~ 378 (679)
T 4e6h_A 300 QQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKN-TDSTVITKYLKLGQQCIPNSA 378 (679)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS-CCTTHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHhCCCCH
Confidence 45789999999999875 2467889999999999999999999999998876 346675 99999999999999
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccH------------------HHHHHHHHHHHHHHHHHHhccccchhh
Q 015472 93 ELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTF------------------EEYLDLFLTRIDGLRRRILFSGEVEGV 154 (406)
Q Consensus 93 ~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~------------------~~~~~l~~~~~~~l~Rr~~~~~~~e~~ 154 (406)
.||..|+.+.+ ..++++.|+.+|++++...+... .....+|+.++...+ |.
T Consensus 379 ~Lwl~~a~~ee-~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er-R~--------- 447 (679)
T 4e6h_A 379 VLAFSLSEQYE-LNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK-RI--------- 447 (679)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH-HH---------
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH-Hc---------
Confidence 99999998555 57889999999999998532100 012345655554443 33
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHH
Q 015472 155 LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHIN 234 (406)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~ 234 (406)
++++.+|.+|.+|++.+. +....+|+.+|.+|...++++++||.||+++++.+|+++.+|+.|++|+...|+.+
T Consensus 448 ~~l~~AR~vf~~A~~~~~------~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 448 QGLAASRKIFGKCRRLKK------LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HCHHHHHHHHHHHHHTGG------GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHH
T ss_pred CCHHHHHHHHHHHHHhcC------CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHH
Confidence 345689999999987631 12356899999999998767999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccC-CCChHHHHHHHHHHHHHhCCHHHHHHHHHhh
Q 015472 235 EARSIYKRCYSKRFT-GTGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (406)
Q Consensus 235 ~ar~l~~ral~~~~~-~~~~~~i~~~~i~fE~~~G~~e~~~~a~~k~ 280 (406)
+||.+|++|+.. ++ ...+..||..|+.||..+|+++++..+.+++
T Consensus 522 ~AR~lferal~~-~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~ 567 (679)
T 4e6h_A 522 QVKSLFESSIDK-ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRF 567 (679)
T ss_dssp HHHHHHHHHTTT-SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999985 44 2357899999999999999999987765554
No 2
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.95 E-value=1.5e-25 Score=228.12 Aligned_cols=260 Identities=14% Similarity=0.142 Sum_probs=185.8
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCC------------------------
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQS----SGDPGRVQLLYERAITDFPV------------------------ 55 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~----~g~~~~~~~lyEral~~~P~------------------------ 55 (406)
.|..||.+|.... .|+....+|..|+.|+.+ +|+.++++.+|+|||.. |.
T Consensus 67 i~~~fe~al~~vg-~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~fE~~~~~~~~~~ 144 (493)
T 2uy1_A 67 LYEVYEFTLGQFE-NYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PMGSLSELWKDFENFELELNKITGKK 144 (493)
T ss_dssp THHHHHHHHHHST-TCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHcC-CCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHHHhccccHHH
Confidence 4677888887643 233456788888888653 45677888888888873 43
Q ss_pred --------------------------CHHHHHHHHHHHHHhc-c-----hhhhHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015472 56 --------------------------SSDLWLDYTQYLDKTL-K-----VGNVVRDVYSRATKNCPWVGELWVRSLLSLE 103 (406)
Q Consensus 56 --------------------------~~~lW~~Y~~~l~~~~-~-----~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE 103 (406)
+..+|..|+.|..... + ..+++..+|++|+..+|..+.+|..|+.++.
T Consensus 145 ~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~ 224 (493)
T 2uy1_A 145 IVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLI 224 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 2337777777765321 0 1345788999999999999999999998665
Q ss_pred HccCCHHHHHHHHHHHHhCcccc--HHHHHHHHH---HHHHHHHHHHh-cc---------ccc-----------hhhhhH
Q 015472 104 RSRASEEEISTVFEKSLLCAFST--FEEYLDLFL---TRIDGLRRRIL-FS---------GEV-----------EGVLDY 157 (406)
Q Consensus 104 ~~~~~~e~ar~if~~al~~~~~~--~~~~~~l~~---~~~~~l~Rr~~-~~---------~~~-----------e~~~~~ 157 (406)
..++.+.|+.+|++|+.. |.. ++.++..+. ..++.+..+.. .. ... ....++
T Consensus 225 -~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~ 302 (493)
T 2uy1_A 225 -GIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGL 302 (493)
T ss_dssp -HTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCH
T ss_pred -HcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCH
Confidence 578899999999999988 643 222222210 00111110000 00 000 011334
Q ss_pred HHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHH
Q 015472 158 SLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEAR 237 (406)
Q Consensus 158 ~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar 237 (406)
+.+|.+|++| .. + +....+|..+|.+|..+++++++||.||+++++.+|+++++|+.|++||...|+.++||
T Consensus 303 ~~AR~i~~~A-~~--~-----~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR 374 (493)
T 2uy1_A 303 ELFRKLFIEL-GN--E-----GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENAR 374 (493)
T ss_dssp HHHHHHHHHH-TT--S-----CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHh-hC--C-----CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 5678888888 32 1 12356999999999998867999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhhch
Q 015472 238 SIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTP 282 (406)
Q Consensus 238 ~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~a~~k~~~ 282 (406)
.+|+++.. +..+|..|++||..+|+.+++..++.+.++
T Consensus 375 ~l~er~~k-------~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 375 ALFKRLEK-------TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHSCC-------BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999842 479999999999999999998876666654
No 3
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.95 E-value=3.4e-25 Score=211.35 Aligned_cols=237 Identities=21% Similarity=0.268 Sum_probs=190.4
Q ss_pred hhhHHHHHHHHHHHHhc----CCh----hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh------cchh-------hhHH
Q 015472 20 SEKFQQYMIYLKYEQSS----GDP----GRVQLLYERAITDFPVSSDLWLDYTQYLDKT------LKVG-------NVVR 78 (406)
Q Consensus 20 ~~~~~~w~~Yi~~E~~~----g~~----~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~------~~~~-------e~a~ 78 (406)
+.....|..|++||++. ++. .+|..+|++||..+|.++++|..|+.++... .+.. +.|+
T Consensus 5 ~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~ 84 (308)
T 2ond_A 5 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 84 (308)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHH
Confidence 45788999999999986 243 6888999999999999999999999998643 2333 7899
Q ss_pred HHHHHHHH-hCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhH
Q 015472 79 DVYSRATK-NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDY 157 (406)
Q Consensus 79 ~vyerA~~-~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~ 157 (406)
.+|+||+. ..|.+..+|..|+.+++ ..+++++|+.+|++++...|..... +|..+...+. +. +++
T Consensus 85 ~~~~rAl~~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~---~~~~~~~~~~-~~---------~~~ 150 (308)
T 2ond_A 85 NIYERAISTLLKKNMLLYFAYADYEE-SRMKYEKVHSIYNRLLAIEDIDPTL---VYIQYMKFAR-RA---------EGI 150 (308)
T ss_dssp HHHHHHHTTTTTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSSSSCTHH---HHHHHHHHHH-HH---------HCH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhccccCccH---HHHHHHHHHH-Hh---------cCH
Confidence 99999999 58999999999998554 5889999999999999987753321 2222222221 11 455
Q ss_pred HHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHH
Q 015472 158 SLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQS-MGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEA 236 (406)
Q Consensus 158 ~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~-~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~a 236 (406)
+.++.+|++|+... +....+|..++.++.. .| +++.|+.+|++++..+|+++.+|..|+.++...|++++|
T Consensus 151 ~~A~~~~~~a~~~~-------p~~~~~~~~~a~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A 222 (308)
T 2ond_A 151 KSGRMIFKKAREDA-------RTRHHVYVTAALMEYYCSK-DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNT 222 (308)
T ss_dssp HHHHHHHHHHHTST-------TCCTHHHHHHHHHHHHTSC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 67888999987752 3345688888888766 46 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc-cCCCChHHHHHHHHHHHHHhCCHHHHHHHHH
Q 015472 237 RSIYKRCYSKR-FTGTGSEDICHAWLRFEREYGTLEDFDHSVQ 278 (406)
Q Consensus 237 r~l~~ral~~~-~~~~~~~~i~~~~i~fE~~~G~~e~~~~a~~ 278 (406)
+.+|++|+... ++.+.+..+|..|+.||..+|+.+.+..+.+
T Consensus 223 ~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 223 RVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999841 3433467899999999999999887665433
No 4
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.94 E-value=1.5e-24 Score=227.80 Aligned_cols=265 Identities=12% Similarity=0.119 Sum_probs=191.6
Q ss_pred hhhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcch----
Q 015472 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGD---PGRVQLLYERAITDFP--VSSDLWLDYTQYLDKTLKV---- 73 (406)
Q Consensus 3 ~~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~---~~~~~~lyEral~~~P--~~~~lW~~Y~~~l~~~~~~---- 73 (406)
.+|.+||.+|...|. ....|..|+++|.+.|+ ++.+..+|+|||..+| .++++|..|+.|+...+..
T Consensus 84 ~aR~vyEraL~~fP~----~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~ 159 (679)
T 4e6h_A 84 QVYETFDKLHDRFPL----MANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGG 159 (679)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTH
T ss_pred HHHHHHHHHHHHCCC----CHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccccccc
Confidence 478999999999984 57789999999999998 9999999999999984 7999999999998765421
Q ss_pred ---hhhHHHHHHHHHHhC----CCCHHHHHHHHHHHHH--------ccCCHHHHHHHHHHHHhCccccHH----HHHHHH
Q 015472 74 ---GNVVRDVYSRATKNC----PWVGELWVRSLLSLER--------SRASEEEISTVFEKSLLCAFSTFE----EYLDLF 134 (406)
Q Consensus 74 ---~e~a~~vyerA~~~~----P~~~~lW~~y~~~lE~--------~~~~~e~ar~if~~al~~~~~~~~----~~~~l~ 134 (406)
.+.++.+|++|+..+ |.++.+|..|+.++.. .++.++.+|.+|+++|..|...+. .|..+.
T Consensus 160 ~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe 239 (679)
T 4e6h_A 160 EEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWE 239 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 245779999999864 4578899999986542 123478899999999987654332 222221
Q ss_pred HH--------H-----HHHHH-HHHh-------------cccc-------------------ch---hhhh---------
Q 015472 135 LT--------R-----IDGLR-RRIL-------------FSGE-------------------VE---GVLD--------- 156 (406)
Q Consensus 135 ~~--------~-----~~~l~-Rr~~-------------~~~~-------------------~e---~~~~--------- 156 (406)
.. . .+|.. |... .+.. +. .+++
T Consensus 240 ~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l 319 (679)
T 4e6h_A 240 QDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLEL 319 (679)
T ss_dssp HHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCC
T ss_pred HhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccc
Confidence 11 0 00110 0000 0000 00 1111
Q ss_pred -----HHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHhccchHHHHHHHHHHHHHc
Q 015472 157 -----YSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSAR-GVWERLLKISGAMLEAWQSYISMEIEL 230 (406)
Q Consensus 157 -----~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar-~ife~al~~~~~~~~lW~~y~~~E~~~ 230 (406)
...++.+|++|+..+ +....+|..|++++...| +.+.|+ .+|++|+..+|.+..+|+.|+.++...
T Consensus 320 ~~~~~~~Rv~~~Ye~aL~~~-------p~~~~lW~~ya~~~~~~~-~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~ 391 (679)
T 4e6h_A 320 SDDLHKARMTYVYMQAAQHV-------CFAPEIWFNMANYQGEKN-TDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELN 391 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHT-------TTCHHHHHHHHHHHHHHS-CCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred cchhhHHHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 123456788887764 445679999999999999 788896 999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhcc----------cCCC---------ChHHHHHHHHHHHHHhCCHHHHHHHHHh
Q 015472 231 DHINEARSIYKRCYSKR----------FTGT---------GSEDICHAWLRFEREYGTLEDFDHSVQK 279 (406)
Q Consensus 231 g~~~~ar~l~~ral~~~----------~~~~---------~~~~i~~~~i~fE~~~G~~e~~~~a~~k 279 (406)
|++++||.+|++++... .|.. ....+|..|+.||+..|+++.....+.+
T Consensus 392 ~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~ 459 (679)
T 4e6h_A 392 TKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK 459 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999731 1211 1346899999999999998876554443
No 5
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.92 E-value=3.6e-23 Score=211.82 Aligned_cols=236 Identities=21% Similarity=0.251 Sum_probs=186.5
Q ss_pred hHHHHHHHHHHHHhcC----Ch----hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh------cchhh-------hHHHH
Q 015472 22 KFQQYMIYLKYEQSSG----DP----GRVQLLYERAITDFPVSSDLWLDYTQYLDKT------LKVGN-------VVRDV 80 (406)
Q Consensus 22 ~~~~w~~Yi~~E~~~g----~~----~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~------~~~~e-------~a~~v 80 (406)
....|..|+.|+...+ +. .++..+|++||..+|.++++|..|+.++... .++.+ .|+.+
T Consensus 229 ~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 229 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 4679999999998753 33 4788999999999999999999999999862 23443 89999
Q ss_pred HHHHHH-hCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHH
Q 015472 81 YSRATK-NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSL 159 (406)
Q Consensus 81 yerA~~-~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~ 159 (406)
|+||+. .+|.+..+|..|+.++ ...+++++|+.+|++++..+|.... .+|..+...++ +. ++++.
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~-~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~-~~---------~~~~~ 374 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYE-ESRMKYEKVHSIYNRLLAIEDIDPT---LVYIQYMKFAR-RA---------EGIKS 374 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHSSSSCHH---HHHHHHHHHHH-HH---------HHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHH-HhcCCHHHHHHHHHHHhCccccCch---HHHHHHHHHHH-Hh---------cCHHH
Confidence 999998 7899999999999855 4589999999999999998775421 13333332222 22 34567
Q ss_pred HHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHH
Q 015472 160 IRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQS-MGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARS 238 (406)
Q Consensus 160 ~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~-~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~ 238 (406)
++.+|++|++.. +....++...+.++.. .| +++.|+.+|+++++.+|+++.+|..|+.++...|+.++||.
T Consensus 375 A~~~~~~Al~~~-------~~~~~~~~~~a~~~~~~~~-~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~ 446 (530)
T 2ooe_A 375 GRMIFKKAREDA-------RTRHHVYVTAALMEYYCSK-DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRV 446 (530)
T ss_dssp HHHHHHHHHTCT-------TCCTHHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHH
T ss_pred HHHHHHHHHhcc-------CCchHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHH
Confidence 888999987752 2233455566666544 56 99999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCC--ChHHHHHHHHHHHHHhCCHHHHHHHHHhh
Q 015472 239 IYKRCYSKRFTGT--GSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (406)
Q Consensus 239 l~~ral~~~~~~~--~~~~i~~~~i~fE~~~G~~e~~~~a~~k~ 280 (406)
+|++|+.. .+.+ ....+|..|+.||..+|+.+++..+.+++
T Consensus 447 ~~~~al~~-~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 447 LFERVLTS-GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHS-CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHhc-cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999984 3322 34679999999999999999887655554
No 6
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.91 E-value=7.6e-24 Score=215.60 Aligned_cols=240 Identities=12% Similarity=0.047 Sum_probs=175.7
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcC--C-----hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhh
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSG--D-----PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNV 76 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g--~-----~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~ 76 (406)
+|..|+.++...+. ...+.|..|++||+.++ . ..++..+|++||..+|.++.+|+.|+.|+...+ +.+.
T Consensus 156 ar~~y~~~~~~~~~---~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~-~~~~ 231 (493)
T 2uy1_A 156 SFQRYQQIQPLIRG---WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIG-QKEK 231 (493)
T ss_dssp HHHHHHHHHHHHHT---CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CHHH
T ss_pred HHHHHHHHHHHHhh---ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHH
Confidence 46666666654331 13568999999998753 1 467899999999999999999999999998754 6789
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------------------------HccCCHHHHHHHHH
Q 015472 77 VRDVYSRATKNCPWVGELWVRSLLSLE---------------------------------------RSRASEEEISTVFE 117 (406)
Q Consensus 77 a~~vyerA~~~~P~~~~lW~~y~~~lE---------------------------------------~~~~~~e~ar~if~ 117 (406)
|+.+|+||+.. |++..+|..|+.+.+ ...++.+.||.+|+
T Consensus 232 ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~ 310 (493)
T 2uy1_A 232 AKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFI 310 (493)
T ss_dssp HHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999 998777766665321 12334566666666
Q ss_pred HHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCC
Q 015472 118 KSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGK 197 (406)
Q Consensus 118 ~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~ 197 (406)
+| ..+......+ ..+. .+..+. ..+.+.+|.+|+.+++.+ +....+|..|+++|..+|
T Consensus 311 ~A-~~~~~~~~v~----i~~A-~lE~~~--------~~d~~~ar~ife~al~~~-------~~~~~~~~~yid~e~~~~- 368 (493)
T 2uy1_A 311 EL-GNEGVGPHVF----IYCA-FIEYYA--------TGSRATPYNIFSSGLLKH-------PDSTLLKEEFFLFLLRIG- 368 (493)
T ss_dssp HH-TTSCCCHHHH----HHHH-HHHHHH--------HCCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHT-
T ss_pred Hh-hCCCCChHHH----HHHH-HHHHHH--------CCChHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcC-
Confidence 66 3322222211 1111 000011 014567899999998864 223458999999999999
Q ss_pred CHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccC---CCChHHHHHHHHHHHHHhCCHHHHH
Q 015472 198 DMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFT---GTGSEDICHAWLRFEREYGTLEDFD 274 (406)
Q Consensus 198 d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~---~~~~~~i~~~~i~fE~~~G~~e~~~ 274 (406)
+.++||.+|+++ ..+..+|..|++||..+|+.+.+|++|++++.. +. .+++..++++|++||+.+|+++++-
T Consensus 369 ~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~-~~~~~~~~~~~~~~~~~~fe~~~g~l~~~~ 443 (493)
T 2uy1_A 369 DEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMDA-IKADAILPPLPPREHNVQMEGILGRYHCFL 443 (493)
T ss_dssp CHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-HHTTCCBCCCCCC--CCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-hcccccCCcccccccHHHHHHHhhhHHHHH
Confidence 999999999998 356899999999999999999999999999973 33 2457789999999999999998865
Q ss_pred H
Q 015472 275 H 275 (406)
Q Consensus 275 ~ 275 (406)
+
T Consensus 444 ~ 444 (493)
T 2uy1_A 444 D 444 (493)
T ss_dssp H
T ss_pred H
Confidence 4
No 7
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.90 E-value=1.3e-21 Score=200.31 Aligned_cols=263 Identities=16% Similarity=0.220 Sum_probs=189.6
Q ss_pred hhhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhh----HH
Q 015472 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNV----VR 78 (406)
Q Consensus 3 ~~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~----a~ 78 (406)
.+|..||.+|...|. +..+|..|+.++.+.|+++.|+.+|+|||..+| ++++|..|+.|+....++.+. ++
T Consensus 30 ~a~~~~e~al~~~P~----~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~ 104 (530)
T 2ooe_A 30 KARKTYERLVAQFPS----SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMA 104 (530)
T ss_dssp HHHHHHHHHHTTCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHH
T ss_pred HHHHHHHHHHHHCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHH
Confidence 478999999999873 578999999999999999999999999999999 789999999988655444444 44
Q ss_pred HHHHHHHHhC---CCCHHHHHHHHHHHHHc--------cCCHHHHHHHHHHHHhCccccH----HHHHHHHHHH------
Q 015472 79 DVYSRATKNC---PWVGELWVRSLLSLERS--------RASEEEISTVFEKSLLCAFSTF----EEYLDLFLTR------ 137 (406)
Q Consensus 79 ~vyerA~~~~---P~~~~lW~~y~~~lE~~--------~~~~e~ar~if~~al~~~~~~~----~~~~~l~~~~------ 137 (406)
.+|++|+..+ |.+..+|..|+.++... .++++.|+.+|++++..+.... ..|..+....
T Consensus 105 ~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~ 184 (530)
T 2ooe_A 105 QAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAK 184 (530)
T ss_dssp HHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHH
Confidence 5999998865 46789999999854321 5678999999999999643221 2222211000
Q ss_pred -------HHHHH-H----------HHhc------c-cc-------ch---hhhhH---------------HHHHHHHHHH
Q 015472 138 -------IDGLR-R----------RILF------S-GE-------VE---GVLDY---------------SLIRETFQRA 167 (406)
Q Consensus 138 -------~~~l~-R----------r~~~------~-~~-------~e---~~~~~---------------~~~r~~f~~a 167 (406)
..+.. + ..+. + .. .. .++++ ..+...|++|
T Consensus 185 ~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~a 264 (530)
T 2ooe_A 185 KMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQC 264 (530)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHH
Confidence 00000 0 0110 0 00 00 00111 1233456666
Q ss_pred HHHHhhhhcCCchHHHHHHHHHHHHHH-------cCCCHH-------HHHHHHHHHHH-hccchHHHHHHHHHHHHHccc
Q 015472 168 SDYLSEQMKNTDGLLRLYAYWAHLEQS-------MGKDMV-------SARGVWERLLK-ISGAMLEAWQSYISMEIELDH 232 (406)
Q Consensus 168 ~~~l~~~~~~~~~~~~l~~~~a~~e~~-------~~~d~~-------~Ar~ife~al~-~~~~~~~lW~~y~~~E~~~g~ 232 (406)
+.. .|....+|..|+.++.. .| +++ .|+.+|++|+. .+|++..+|..|+.++...|+
T Consensus 265 l~~-------~p~~~~~w~~~~~~~~~~~~~~~~~g-~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~ 336 (530)
T 2ooe_A 265 LLV-------LGHHPDIWYEAAQYLEQSSKLLAEKG-DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK 336 (530)
T ss_dssp HHH-------HTTCHHHHHHHHHHHHHHHHHHHTTT-CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTC
T ss_pred HHh-------CCCCHHHHHHHHHHHHHhchhhhhcc-chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC
Confidence 554 34557899999999876 57 776 89999999998 689999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhh
Q 015472 233 INEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (406)
Q Consensus 233 ~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~a~~k~ 280 (406)
+++|+.+|++++.. +...+..+|..|..|++..|+.+....++.+.
T Consensus 337 ~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 337 YEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999974 33334569999999999999887765554443
No 8
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=6e-21 Score=181.81 Aligned_cols=219 Identities=15% Similarity=0.192 Sum_probs=181.1
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHHHh-------cCCh-------hHHHHHHHHHHh-cCCCCHHHHHHHHHHHH
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQS-------SGDP-------GRVQLLYERAIT-DFPVSSDLWLDYTQYLD 68 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~-------~g~~-------~~~~~lyEral~-~~P~~~~lW~~Y~~~l~ 68 (406)
+...||.+|...|. +.++|..|+.++.. .|++ +.|+.+|+|||. ..|.+..+|..|+.++.
T Consensus 35 a~~~~~~al~~~p~----~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 35 VMFAYEQCLLVLGH----HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC----CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 44699999998873 68899999999864 5886 899999999999 69999999999999988
Q ss_pred HhcchhhhHHHHHHHHHHhCCCCHH-HHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhc
Q 015472 69 KTLKVGNVVRDVYSRATKNCPWVGE-LWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILF 147 (406)
Q Consensus 69 ~~~~~~e~a~~vyerA~~~~P~~~~-lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~ 147 (406)
..+ ..+.|+.+|++|+...|.... +|..|+.++ ...+++++|+.+|++|+...|..+..++... .+.+ .
T Consensus 111 ~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a--~~~~---~--- 180 (308)
T 2ond_A 111 SRM-KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFA-RRAEGIKSGRMIFKKAREDARTRHHVYVTAA--LMEY---Y--- 180 (308)
T ss_dssp HTT-CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHH-HHHHCHHHHHHHHHHHHTSTTCCTHHHHHHH--HHHH---H---
T ss_pred hcC-CHHHHHHHHHHHHhccccCccHHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHH--HHHH---H---
Confidence 755 678999999999999998776 999999855 4588999999999999998776544433211 1100 0
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---cc-chHHHHHHH
Q 015472 148 SGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI---SG-AMLEAWQSY 223 (406)
Q Consensus 148 ~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~---~~-~~~~lW~~y 223 (406)
..++++.++.+|++++... |....+|..|+.++..+| ++++|+.+|++++.. .| +...+|..|
T Consensus 181 -----~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~~l~p~~~~~l~~~~ 247 (308)
T 2ond_A 181 -----CSKDKSVAFKIFELGLKKY-------GDIPEYVLAYIDYLSHLN-EDNNTRVLFERVLTSGSLPPEKSGEIWARF 247 (308)
T ss_dssp -----TSCCHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHSSSSCGGGCHHHHHHH
T ss_pred -----HcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 0145668899999998864 345679999999999999 999999999999996 44 478899999
Q ss_pred HHHHHHcccHHHHHHHHHHHHhcccCC
Q 015472 224 ISMEIELDHINEARSIYKRCYSKRFTG 250 (406)
Q Consensus 224 ~~~E~~~g~~~~ar~l~~ral~~~~~~ 250 (406)
+.|+...|+.+.|+.++.+++. .+|.
T Consensus 248 ~~~~~~~g~~~~a~~~~~~a~~-~~p~ 273 (308)
T 2ond_A 248 LAFESNIGDLASILKVEKRRFT-AFRE 273 (308)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHH-HTTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHH-Hccc
Confidence 9999999999999999999998 4664
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.66 E-value=1.2e-13 Score=134.41 Aligned_cols=259 Identities=13% Similarity=0.045 Sum_probs=169.5
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHH
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyer 83 (406)
+...++.++...|. ....|...+......|+++.+...|++++...|.++..|...+..+...+ ..+.|...|++
T Consensus 52 a~~~~~~a~~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~ 126 (388)
T 1w3b_A 52 SAHFSTLAIKQNPL----LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG-DMEGAVQAYVS 126 (388)
T ss_dssp HHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHS-CSSHHHHHHHH
T ss_pred HHHHHHHHHhcCCC----chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcC-CHHHHHHHHHH
Confidence 45667778877762 46678888887888888888888888888888888888888887766544 56778888888
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHH--------HHHHHHh--ccccchh
Q 015472 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRID--------GLRRRIL--FSGEVEG 153 (406)
Q Consensus 84 A~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~--------~l~Rr~~--~~~~~e~ 153 (406)
++...|....+|..++..+ ...+++++|..+|++++...|.....+..+...+.. ...++++ .+...+.
T Consensus 127 al~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 205 (388)
T 1w3b_A 127 ALQYNPDLYCVRSDLGNLL-KALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA 205 (388)
T ss_dssp HHHHCTTCTHHHHHHHHHH-HTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHhCCCcHHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 8888888888888877644 457888888888888887666543333332211100 0001111 1111110
Q ss_pred ----------hhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHH
Q 015472 154 ----------VLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSY 223 (406)
Q Consensus 154 ----------~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y 223 (406)
.+++..+...|.+++.. .|....+|...+......| +++.|...|++++...|+++.+|...
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l 277 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSL-------SPNHAVVHGNLACVYYEQG-LIDLAIDTYRRAIELQPHFPDAYCNL 277 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTCSSCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh-------CcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 11222333444444332 3444556777777777777 78888888888888888888888888
Q ss_pred HHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHh
Q 015472 224 ISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (406)
Q Consensus 224 ~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~a~~k 279 (406)
+......|+++.|..+|++++.. .|. ....|..........|+.+......++
T Consensus 278 ~~~~~~~g~~~~A~~~~~~al~~-~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (388)
T 1w3b_A 278 ANALKEKGSVAEAEDCYNTALRL-CPT--HADSLNNLANIKREQGNIEEAVRLYRK 330 (388)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHH-CTT--CHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh-Ccc--cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888888888888888863 332 345566666666667776654433333
No 10
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.66 E-value=1.2e-14 Score=140.23 Aligned_cols=211 Identities=12% Similarity=0.018 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015472 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSL 102 (406)
Q Consensus 23 ~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~l 102 (406)
...|...+......|+++.+..+|++++..+|.+..+|..++..+...+ ..+.|..+|++|+...|.....|..++..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENE-NEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3457777888888899999999999999999999999999998777654 678899999999999999889999888754
Q ss_pred HHccCCHHHHHHHHHHHHhCccccHHHHHHH-----HHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHH--------
Q 015472 103 ERSRASEEEISTVFEKSLLCAFSTFEEYLDL-----FLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASD-------- 169 (406)
Q Consensus 103 E~~~~~~e~ar~if~~al~~~~~~~~~~~~l-----~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~-------- 169 (406)
...+++++|..+|++++...|.....+..+ .......+... .+++..+...|++++.
T Consensus 144 -~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~al~~~p~~~~~ 213 (365)
T 4eqf_A 144 -TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVD---------SSVLEGVKELYLEAAHQNGDMIDP 213 (365)
T ss_dssp -HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------C---------CHHHHHHHHHHHHHHHHSCSSCCH
T ss_pred -HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhh---------hhhHHHHHHHHHHHHHhCcCccCH
Confidence 458899999999999998655311101000 00000000000 0122223333333332
Q ss_pred ---------------------HHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 015472 170 ---------------------YLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEI 228 (406)
Q Consensus 170 ---------------------~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~ 228 (406)
++...+...|....+|..++.+....| +++.|..+|++++..+|+++.+|...+....
T Consensus 214 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 292 (365)
T 4eqf_A 214 DLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGD-RSEEAVEAYTRALEIQPGFIRSRYNLGISCI 292 (365)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 222222112333445555666555555 5666666666666666666666666666666
Q ss_pred HcccHHHHHHHHHHHHh
Q 015472 229 ELDHINEARSIYKRCYS 245 (406)
Q Consensus 229 ~~g~~~~ar~l~~ral~ 245 (406)
..|+++.|..+|++++.
T Consensus 293 ~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 293 NLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHTCCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 66666666666666655
No 11
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.64 E-value=3.1e-13 Score=131.47 Aligned_cols=260 Identities=12% Similarity=0.062 Sum_probs=192.8
Q ss_pred hhhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHH
Q 015472 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (406)
Q Consensus 3 ~~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vye 82 (406)
.+...|+.++...| .+...+..........|+++.+...+++++..+|.++..|...+..+...+ ..+.|...|+
T Consensus 17 ~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~ 91 (388)
T 1w3b_A 17 AAERHCMQLWRQEP----DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG-QLQEAIEHYR 91 (388)
T ss_dssp HHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence 35678889998887 346678888888888999999999999999999999999999998877654 6789999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHH-----HH---HHHHHHh--ccccch
Q 015472 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTR-----ID---GLRRRIL--FSGEVE 152 (406)
Q Consensus 83 rA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~-----~~---~l~Rr~~--~~~~~e 152 (406)
+|+...|.....|...+..+ ...+++++|...|.+++...|.....+..+.... .+ .+.++++ .+....
T Consensus 92 ~al~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 170 (388)
T 1w3b_A 92 HALRLKPDFIDGYINLAAAL-VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV 170 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHH-HHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHcCcchHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999988755 4589999999999999997765333222221110 00 0011111 111111
Q ss_pred ----------hhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHH
Q 015472 153 ----------GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQS 222 (406)
Q Consensus 153 ----------~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~ 222 (406)
..+++..+...|++++.. .|.....|...+.+....| +++.|...|++++...|+++.+|..
T Consensus 171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~ 242 (388)
T 1w3b_A 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTL-------DPNFLDAYINLGNVLKEAR-IFDRAVAAYLRALSLSPNHAVVHGN 242 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHTTT-CTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCcCCHHHHHH
Confidence 113344455556665543 3555678888888888888 8999999999999999999999999
Q ss_pred HHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHh
Q 015472 223 YISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (406)
Q Consensus 223 y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~a~~k 279 (406)
.+......|+++.|..+|++++.. .| ....+|......-...|+.+....+..+
T Consensus 243 l~~~~~~~g~~~~A~~~~~~al~~-~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 296 (388)
T 1w3b_A 243 LACVYYEQGLIDLAIDTYRRAIEL-QP--HFPDAYCNLANALKEKGSVAEAEDCYNT 296 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT-CS--SCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh-CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999999999974 23 2345676667767777887665444433
No 12
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.63 E-value=2.6e-13 Score=127.72 Aligned_cols=262 Identities=10% Similarity=0.033 Sum_probs=175.4
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHH
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyer 83 (406)
+...|+.+|...|. ....+..++......|+++.+..+|++++..+|.++.+|...+..+...++..+.|...|++
T Consensus 41 A~~~~~~~l~~~p~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 116 (330)
T 3hym_B 41 CYKLTSVVMEKDPF----HASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSK 116 (330)
T ss_dssp HHHHHHHHHHHCTT----CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC----ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 56678888877762 34455556666667788888888888888888888888888887766544356778888888
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHH-----H---HHHHHHhc--cccch-
Q 015472 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRI-----D---GLRRRILF--SGEVE- 152 (406)
Q Consensus 84 A~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~-----~---~l~Rr~~~--~~~~e- 152 (406)
|+...|.....|..++..+ ...+++++|..+|++++...+.....+..+...+. + ...++++. +....
T Consensus 117 a~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 195 (330)
T 3hym_B 117 ATTLEKTYGPAWIAYGHSF-AVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFV 195 (330)
T ss_dssp HHTTCTTCTHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHhCCccHHHHHHHHHHH-HHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHH
Confidence 8888888778888877644 35778888888888888765542222211111100 0 00011111 11111
Q ss_pred ---------hhhhHHHHHHHHHHHHHHHhhhhcC--CchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHH
Q 015472 153 ---------GVLDYSLIRETFQRASDYLSEQMKN--TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQ 221 (406)
Q Consensus 153 ---------~~~~~~~~r~~f~~a~~~l~~~~~~--~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~ 221 (406)
..+++..+...|++++...+..... .+....+|..++.+....| +++.|...|++++...|+++.+|.
T Consensus 196 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~ 274 (330)
T 3hym_B 196 MHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK-KYAEALDYHRQALVLIPQNASTYS 274 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCSHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhCccchHHHH
Confidence 1234555667777776654221111 1334568889999999999 999999999999999999999999
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHH-HHHHhCCHHHHH
Q 015472 222 SYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLR-FEREYGTLEDFD 274 (406)
Q Consensus 222 ~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~-fE~~~G~~e~~~ 274 (406)
..+......|+++.|..+|++++.. .| +. ...+..... ++...|+.+.+.
T Consensus 275 ~la~~~~~~g~~~~A~~~~~~al~~-~p-~~-~~~~~~l~~~~~~~~g~~~a~~ 325 (330)
T 3hym_B 275 AIGYIHSLMGNFENAVDYFHTALGL-RR-DD-TFSVTMLGHCIEMYIGDSEAYI 325 (330)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTTTT-CS-CC-HHHHHHHHHHHHTTTTC-----
T ss_pred HHHHHHHHhccHHHHHHHHHHHHcc-CC-Cc-hHHHHHHHHHHHHHhCchhccC
Confidence 9999999999999999999999974 33 33 344444444 677888876654
No 13
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.62 E-value=4.1e-14 Score=127.51 Aligned_cols=199 Identities=14% Similarity=-0.021 Sum_probs=149.9
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015472 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (406)
Q Consensus 22 ~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~ 101 (406)
+...|...+......|+++.+...|+++|..+|.++..|..++..+...+ ..+.|...|++|+...|.+...|..++..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLG-LVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 45678888888889999999999999999999999999999998887654 67899999999999999999999999875
Q ss_pred HHHcc-----------CCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHH
Q 015472 102 LERSR-----------ASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDY 170 (406)
Q Consensus 102 lE~~~-----------~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~ 170 (406)
+. .. +++++|...|++++...|.....+..+...+. ..++++.+...|++++..
T Consensus 83 ~~-~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~--------------~~g~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 83 YV-ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYA--------------LLGERDKAEASLKQALAL 147 (217)
T ss_dssp HH-HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------------HTTCHHHHHHHHHHHHHH
T ss_pred HH-HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH--------------HcCChHHHHHHHHHHHhc
Confidence 54 46 88999999999999987765554444332221 114556777788887765
Q ss_pred HhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 015472 171 LSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (406)
Q Consensus 171 l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~ 245 (406)
. ....+|..++.+....| +++.|...|++++...|+++.+|..++.+....|+++.|...|+++-.
T Consensus 148 -------~-~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 148 -------E-DTPEIRSALAELYLSMG-RLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp -------C-CCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred -------c-cchHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 2 33457888888888889 899999999999999999999999999999999999999999988754
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.62 E-value=1.9e-13 Score=128.77 Aligned_cols=232 Identities=9% Similarity=-0.055 Sum_probs=145.2
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015472 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (406)
Q Consensus 22 ~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~ 101 (406)
+.+.+...+......|+++.+..+|++++..+|.+...|..++..+...+ ..+.+..+|++++...|.+..+|...+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELN-KANELFYLSHKLVDLYPSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhh-hHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 34467777777778899999999999999999999999998888776554 67899999999999999999999999975
Q ss_pred HHHccC-CHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHH-------------
Q 015472 102 LERSRA-SEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRA------------- 167 (406)
Q Consensus 102 lE~~~~-~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a------------- 167 (406)
+. ..+ ++++|...|++++...|.....+..+...+.. .+++..+...|+++
T Consensus 100 ~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~--------------~~~~~~A~~~~~~a~~~~~~~~~~~~~ 164 (330)
T 3hym_B 100 YL-MVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAV--------------ESEHDQAMAAYFTAAQLMKGCHLPMLY 164 (330)
T ss_dssp HH-HSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHH--------------HTCHHHHHHHHHHHHHHTTTCSHHHHH
T ss_pred HH-HhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--------------ccCHHHHHHHHHHHHHhccccHHHHHH
Confidence 54 456 89999999999999776543333322211110 01222233333333
Q ss_pred --------------HHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---------cchHHHHHHHH
Q 015472 168 --------------SDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS---------GAMLEAWQSYI 224 (406)
Q Consensus 168 --------------~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~---------~~~~~lW~~y~ 224 (406)
+.++...+...|....+|..++.+....| +++.|..+|++++... |..+.+|...+
T Consensus 165 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la 243 (330)
T 3hym_B 165 IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNG-EWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG 243 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHH
Confidence 22222222223333445555555555555 5666666666666553 33345555555
Q ss_pred HHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHH
Q 015472 225 SMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDF 273 (406)
Q Consensus 225 ~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~ 273 (406)
......|+++.|..+|++++.. .|. ...+|......-...|+.+..
T Consensus 244 ~~~~~~g~~~~A~~~~~~a~~~-~~~--~~~~~~~la~~~~~~g~~~~A 289 (330)
T 3hym_B 244 HVCRKLKKYAEALDYHRQALVL-IPQ--NASTYSAIGYIHSLMGNFENA 289 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-STT--CSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhh-Ccc--chHHHHHHHHHHHHhccHHHH
Confidence 5555556666666666666542 221 123444444444444554443
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.60 E-value=3e-13 Score=129.81 Aligned_cols=259 Identities=12% Similarity=0.055 Sum_probs=163.0
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHH
Q 015472 7 HLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATK 86 (406)
Q Consensus 7 ~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~ 86 (406)
.|+.++...+.........|...+......|+++.+..+|++++..+|.++.+|...+..+...+ ..+.|...|++|+.
T Consensus 48 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~ 126 (368)
T 1fch_A 48 TYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE-QELLAISALRRCLE 126 (368)
T ss_dssp HHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred hhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc-CHHHHHHHHHHHHh
Confidence 56666665542111123457777777788899999999999999999999999999888776544 67889999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHH------------------HHHHHH--HHHH---HHH
Q 015472 87 NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEY------------------LDLFLT--RIDG---LRR 143 (406)
Q Consensus 87 ~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~------------------~~l~~~--~~~~---l~R 143 (406)
..|....+|..++..+ ...+++++|..+|++++...|.....+ +..... ..+. ..+
T Consensus 127 ~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 205 (368)
T 1fch_A 127 LKPDNQTALMALAVSF-TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFL 205 (368)
T ss_dssp HCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHH
Confidence 9999989998888754 457899999999999998655311110 111100 0000 001
Q ss_pred HHh--ccc--cch----------hhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 015472 144 RIL--FSG--EVE----------GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERL 209 (406)
Q Consensus 144 r~~--~~~--~~e----------~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~a 209 (406)
+++ .+. ... ..+++..+...|++++.. .|....+|...+.+....| +++.|..+|+++
T Consensus 206 ~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a 277 (368)
T 1fch_A 206 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-------RPNDYLLWNKLGATLANGN-QSEEAVAAYRRA 277 (368)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Confidence 111 111 000 012222333333333332 3344556666777777777 777777777777
Q ss_pred HHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCC-C--------hHHHHHHHHHHHHHhCCHHHHHHH
Q 015472 210 LKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGT-G--------SEDICHAWLRFEREYGTLEDFDHS 276 (406)
Q Consensus 210 l~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~-~--------~~~i~~~~i~fE~~~G~~e~~~~a 276 (406)
+...|+++.+|...+......|+++.|..+|++++.. .|.. . ...+|......-...|+.+....+
T Consensus 278 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 278 LELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM-QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 7777777777777777777777777777777777763 2221 0 145566666666666666655443
No 16
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.59 E-value=2.6e-13 Score=130.79 Aligned_cols=248 Identities=10% Similarity=-0.038 Sum_probs=161.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015472 26 YMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERS 105 (406)
Q Consensus 26 w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~ 105 (406)
|..........|....+...|.......+.+...|...+..+...+ ..+.|..+|++|+...|....+|..++..+ ..
T Consensus 34 wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~ 111 (365)
T 4eqf_A 34 WISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEG-DLPVTILFMEAAILQDPGDAEAWQFLGITQ-AE 111 (365)
T ss_dssp -------------------CCCCCSSCTTTTCTTHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HH
T ss_pred HHHHhhhhhhhhhhHHHHHhhhcccCCcccchhHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCcCCHHHHHHHHHHH-HH
Confidence 6554443333344444333333332222344556999998777654 688999999999999999999999999855 45
Q ss_pred cCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHH--------HHHHHHhc--cccchhh-------------hhHHHHHH
Q 015472 106 RASEEEISTVFEKSLLCAFSTFEEYLDLFLTRID--------GLRRRILF--SGEVEGV-------------LDYSLIRE 162 (406)
Q Consensus 106 ~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~--------~l~Rr~~~--~~~~e~~-------------~~~~~~r~ 162 (406)
.+++++|..+|++++...|.....+..+...+.. ...++++. +...... +..-....
T Consensus 112 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g 191 (365)
T 4eqf_A 112 NENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSS 191 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCH
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhh
Confidence 8999999999999999776644444333322110 00111111 1100000 11111235
Q ss_pred HHHHHHHHHhhhhcCCch--HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHH
Q 015472 163 TFQRASDYLSEQMKNTDG--LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIY 240 (406)
Q Consensus 163 ~f~~a~~~l~~~~~~~~~--~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~ 240 (406)
-+++|+.++...+...|. ...+|..++.+....| +++.|..+|++++...|+++.+|...+......|+++.|..+|
T Consensus 192 ~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 270 (365)
T 4eqf_A 192 VLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG-EFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAY 270 (365)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 678888888777665555 5678899999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHh
Q 015472 241 KRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (406)
Q Consensus 241 ~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~a~~k 279 (406)
++++.. .|. ...+|..........|+.+.......+
T Consensus 271 ~~al~~-~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 306 (365)
T 4eqf_A 271 TRALEI-QPG--FIRSRYNLGISCINLGAYREAVSNFLT 306 (365)
T ss_dssp HHHHHH-CTT--CHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHhc-CCC--chHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999984 333 356676666777777886664443433
No 17
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.58 E-value=7.5e-13 Score=124.41 Aligned_cols=239 Identities=10% Similarity=0.003 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015472 24 QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLE 103 (406)
Q Consensus 24 ~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE 103 (406)
..|...+......|+++.+..+|++++..+|.+..+|...+..+...+ ..+.|...|++++...|....+|..++..+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~- 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENE-KDGLAIIALNHARMLDPKDIAVHAALAVSH- 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCcCCHHHHHHHHHHH-
Confidence 356666666677888888888888888888888888888877666543 577888888888888888888888877644
Q ss_pred HccCCHHHHHHHHHHHHhCccccHHHHHHH------------------HH--HHH----HHHHHHHh--ccccch-----
Q 015472 104 RSRASEEEISTVFEKSLLCAFSTFEEYLDL------------------FL--TRI----DGLRRRIL--FSGEVE----- 152 (406)
Q Consensus 104 ~~~~~~e~ar~if~~al~~~~~~~~~~~~l------------------~~--~~~----~~l~Rr~~--~~~~~e----- 152 (406)
...+++++|...|++++...+.....+..+ +. ... ..+ .+++ .+....
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~-~~~~~~~~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLL-HAALEMNPNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHH-HHHHHHSTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHH-HHHHhhCCCCHHHHHHH
Confidence 357888888888888887654311111000 10 000 000 0000 011000
Q ss_pred -----hhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 015472 153 -----GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISME 227 (406)
Q Consensus 153 -----~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E 227 (406)
..++++.+...|++++.. .+....+|...+.+....| +++.|..+|++++...|+++.+|...+...
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 250 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL-------RPDDAQLWNKLGATLANGN-RPQEALDAYNRALDINPGYVRVMYNMAVSY 250 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh-------CCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 012233334444444332 2334456666777766677 777777777777777777777777777777
Q ss_pred HHcccHHHHHHHHHHHHhcccCCC-C---------hHHHHHHHHHHHHHhCCHHHHH
Q 015472 228 IELDHINEARSIYKRCYSKRFTGT-G---------SEDICHAWLRFEREYGTLEDFD 274 (406)
Q Consensus 228 ~~~g~~~~ar~l~~ral~~~~~~~-~---------~~~i~~~~i~fE~~~G~~e~~~ 274 (406)
...|+++.|..+|++++.. .|.. . ...+|..........|+.+...
T Consensus 251 ~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 306 (327)
T 3cv0_A 251 SNMSQYDLAAKQLVRAIYM-QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE 306 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHH-HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh-CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH
Confidence 7777777777777777763 2320 0 2345555555555566655433
No 18
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.57 E-value=4.6e-12 Score=125.11 Aligned_cols=239 Identities=13% Similarity=0.000 Sum_probs=181.6
Q ss_pred hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHH
Q 015472 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSL 99 (406)
Q Consensus 20 ~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~ 99 (406)
|.+...|...+......|+++.|..+|++++..+|.++.+|...+..+...+ ..+.|...|++|+...|....+|..++
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMG-KSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 4678899999999999999999999999999999999999999998777644 688999999999999999999999998
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCccccH---HHHHHHHHHHHH-HHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhh
Q 015472 100 LSLERSRASEEEISTVFEKSLLCAFSTF---EEYLDLFLTRID-GLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQM 175 (406)
Q Consensus 100 ~~lE~~~~~~e~ar~if~~al~~~~~~~---~~~~~l~~~~~~-~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~ 175 (406)
..+ ...+++++|..+|++++...|... ..+..+...... ....... .....+++..+...|++++..
T Consensus 102 ~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~A~~~~~~~~~~----- 172 (450)
T 2y4t_A 102 HLL-LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQAL---NAFGSGDYTAAIAFLDKILEV----- 172 (450)
T ss_dssp HHH-HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHTCHHHHHHHHHHHHHH-----
T ss_pred HHH-HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHH---HHHHcCCHHHHHHHHHHHHHh-----
Confidence 755 458999999999999999877533 322222111000 0000000 000124455666777776654
Q ss_pred cCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHH
Q 015472 176 KNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSED 255 (406)
Q Consensus 176 ~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~ 255 (406)
.+....++...+.+....| +++.|..+|++++...|+++.+|...+......|+++.|..+|++++.. .|. ...
T Consensus 173 --~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~--~~~ 246 (450)
T 2y4t_A 173 --CVWDAELRELRAECFIKEG-EPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL-DQD--HKR 246 (450)
T ss_dssp --CTTCHHHHHHHHHHHHHTT-CGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--CHH
T ss_pred --CCCChHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC--hHH
Confidence 3445678888999999999 9999999999999999999999999999999999999999999999974 333 344
Q ss_pred HHHHH------------HHHHHHhCCHHHHH
Q 015472 256 ICHAW------------LRFEREYGTLEDFD 274 (406)
Q Consensus 256 i~~~~------------i~fE~~~G~~e~~~ 274 (406)
++..+ .......|+.+...
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 277 (450)
T 2y4t_A 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDAT 277 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 55444 44455567765543
No 19
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.56 E-value=4.5e-12 Score=129.99 Aligned_cols=242 Identities=11% Similarity=-0.039 Sum_probs=153.5
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHH
Q 015472 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLL 100 (406)
Q Consensus 21 ~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~ 100 (406)
.+...|...+......|+++.+..+|++++...|.+...|..++..+...+ ..+.+..+|++++...|....+|...+.
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 381 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESG-EKNKLYLISNDLVDRHPEKAVTWLAVGI 381 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTSHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 356788888888888899999999999999888888888888888776554 5678888888888888888888888776
Q ss_pred HHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHH--------HHHHHHh--ccccch----------hhhhHHHH
Q 015472 101 SLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRID--------GLRRRIL--FSGEVE----------GVLDYSLI 160 (406)
Q Consensus 101 ~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~--------~l~Rr~~--~~~~~e----------~~~~~~~~ 160 (406)
.+ ...+++++|..+|++++...|.....+..+...+.. .+.+++. .+.... ..++++.+
T Consensus 382 ~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 382 YY-LCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp HH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HH-HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHH
Confidence 44 357888888888888887655433333222211110 0001111 111100 11223334
Q ss_pred HHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh------ccch-HHHHHHHHHHHHHcccH
Q 015472 161 RETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI------SGAM-LEAWQSYISMEIELDHI 233 (406)
Q Consensus 161 r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~------~~~~-~~lW~~y~~~E~~~g~~ 233 (406)
...|++++.. .+....+|...+.+....| +++.|..+|++++.. .|+. ..+|...+......|++
T Consensus 461 ~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 532 (597)
T 2xpi_A 461 NEYLQSSYAL-------FQYDPLLLNELGVVAFNKS-DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532 (597)
T ss_dssp HHHHHHHHHH-------CCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHh-------CCCChHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCH
Confidence 4444444332 2333456666666666667 677777777777766 3333 56777777777777777
Q ss_pred HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHH
Q 015472 234 NEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDH 275 (406)
Q Consensus 234 ~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~ 275 (406)
+.|..+|++++.. .| ....+|..........|+.+....
T Consensus 533 ~~A~~~~~~~~~~-~p--~~~~~~~~l~~~~~~~g~~~~A~~ 571 (597)
T 2xpi_A 533 DAAIDALNQGLLL-ST--NDANVHTAIALVYLHKKIPGLAIT 571 (597)
T ss_dssp HHHHHHHHHHHHH-SS--CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHh-CC--CChHHHHHHHHHHHHhCCHHHHHH
Confidence 7777777777763 22 234566666666666676655433
No 20
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.56 E-value=7.1e-12 Score=118.91 Aligned_cols=224 Identities=11% Similarity=-0.024 Sum_probs=171.7
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015472 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (406)
Q Consensus 22 ~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~ 101 (406)
+.+.|...+......|+++.|...|++++..+|.++.+|...+..+...+ ..+.|...|++++...|....+|..++..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMG-KSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 35678888888889999999999999999999999999999998877654 68899999999999999999999999875
Q ss_pred HHHccCCHHHHHHHHHHHHhCcc---ccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCC
Q 015472 102 LERSRASEEEISTVFEKSLLCAF---STFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNT 178 (406)
Q Consensus 102 lE~~~~~~e~ar~if~~al~~~~---~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~ 178 (406)
+ ...+++++|..+|++++...| .....+..+.... ...............+++..+...|++++.. .
T Consensus 81 ~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------~ 150 (359)
T 3ieg_A 81 L-LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD--EMQRLRSQALDAFDGADYTAAITFLDKILEV-------C 150 (359)
T ss_dssp H-HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------C
T ss_pred H-HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH--HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------C
Confidence 5 458999999999999999877 4333332221100 0000000000000124455666777776654 3
Q ss_pred chHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHH
Q 015472 179 DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICH 258 (406)
Q Consensus 179 ~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~ 258 (406)
|....++...+.+....| +++.|..+|++++...|+++.+|...+......|+++.|..+|++++.. .|. ....|.
T Consensus 151 ~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~--~~~~~~ 226 (359)
T 3ieg_A 151 VWDAELRELRAECFIKEG-EPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL-DQD--HKRCFA 226 (359)
T ss_dssp TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTT--CHHHHH
T ss_pred CCchHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-Ccc--chHHHH
Confidence 445678888999999999 9999999999999999999999999999999999999999999999984 443 344444
Q ss_pred HH
Q 015472 259 AW 260 (406)
Q Consensus 259 ~~ 260 (406)
.|
T Consensus 227 ~~ 228 (359)
T 3ieg_A 227 HY 228 (359)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 21
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.55 E-value=1.6e-11 Score=116.42 Aligned_cols=260 Identities=13% Similarity=-0.026 Sum_probs=176.7
Q ss_pred hhhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHH
Q 015472 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (406)
Q Consensus 3 ~~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vye 82 (406)
.+...|+.+|...|. +...|...+......|+++.+...|++++...|.+...|...+..+...+ ..+.|...|+
T Consensus 21 ~A~~~~~~~l~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~ 95 (359)
T 3ieg_A 21 DALSQFHAAVDGDPD----NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQG-KLDEAEDDFK 95 (359)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcc----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcC-ChHHHHHHHH
Confidence 356788888888762 46678888888888899999999999999989999999988888776654 6788899999
Q ss_pred HHHHhCC---CCHHHHHHH------------HHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHH--------
Q 015472 83 RATKNCP---WVGELWVRS------------LLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRID-------- 139 (406)
Q Consensus 83 rA~~~~P---~~~~lW~~y------------~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~-------- 139 (406)
+++...| ....+|..+ +..+ ...+++++|..+|++++...|.....+..+...+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 174 (359)
T 3ieg_A 96 KVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDA-FDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAI 174 (359)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 9998888 777777665 3323 357888888889988888666544333322211110
Q ss_pred HHHHHHhc--cccch----------hhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHH------------HHHHHHc
Q 015472 140 GLRRRILF--SGEVE----------GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYW------------AHLEQSM 195 (406)
Q Consensus 140 ~l~Rr~~~--~~~~e----------~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~------------a~~e~~~ 195 (406)
...++++. +.... ..+++..+...|++++.. .+.....|..+ +......
T Consensus 175 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 247 (359)
T 3ieg_A 175 SDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL-------DQDHKRCFAHYKQVKKLNKLIESAEELIRD 247 (359)
T ss_dssp HHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CccchHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 00011111 11111 113334455555555543 22222333322 5567778
Q ss_pred CCCHHHHHHHHHHHHHhccchHHH----HHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHH
Q 015472 196 GKDMVSARGVWERLLKISGAMLEA----WQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLE 271 (406)
Q Consensus 196 ~~d~~~Ar~ife~al~~~~~~~~l----W~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e 271 (406)
| +++.|..+|++++...|+++.+ |...+......|+++.|..+|++++.. .|. ...+|......-...|+.+
T Consensus 248 ~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~g~~~ 323 (359)
T 3ieg_A 248 G-RYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPD--NVNALKDRAEAYLIEEMYD 323 (359)
T ss_dssp T-CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--CHHHHHHHHHHHHHTTCHH
T ss_pred C-CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-Ccc--cHHHHHHHHHHHHHcCCHH
Confidence 8 9999999999999999887644 556778888899999999999999984 332 3567777777777889987
Q ss_pred HHHHHHHh
Q 015472 272 DFDHSVQK 279 (406)
Q Consensus 272 ~~~~a~~k 279 (406)
....+.++
T Consensus 324 ~A~~~~~~ 331 (359)
T 3ieg_A 324 EAIQDYEA 331 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 75544444
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.55 E-value=1.9e-12 Score=124.22 Aligned_cols=238 Identities=11% Similarity=-0.014 Sum_probs=162.2
Q ss_pred cCChhHHHH-HHHHHHhcCCCCH----HHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHH
Q 015472 36 SGDPGRVQL-LYERAITDFPVSS----DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEE 110 (406)
Q Consensus 36 ~g~~~~~~~-lyEral~~~P~~~----~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e 110 (406)
.|+++.+.. .|++++...|.++ ..|...+..+...+ ..+.|..+|++++...|....+|..++..+ ...++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~~~ 115 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEG-DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQ-AENEQEL 115 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTT-CHHHHHHHHHHHHHSCTTCHHHHHHHHHHH-HHTTCHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHCcCHH
Confidence 367888888 9999999888764 56888887776554 688999999999999999999999988755 4589999
Q ss_pred HHHHHHHHHHhCccccHHHHHHHHHHHHH--------HHHHHHh--ccccchhh------------------hhHHHHHH
Q 015472 111 EISTVFEKSLLCAFSTFEEYLDLFLTRID--------GLRRRIL--FSGEVEGV------------------LDYSLIRE 162 (406)
Q Consensus 111 ~ar~if~~al~~~~~~~~~~~~l~~~~~~--------~l~Rr~~--~~~~~e~~------------------~~~~~~r~ 162 (406)
+|..+|++++...|.....+..+...+.. ...++++ .+...... +..-....
T Consensus 116 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 99999999999776544443333221110 0011111 11110000 00001223
Q ss_pred HHHHHHHHHhhhhcCCch--HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHH
Q 015472 163 TFQRASDYLSEQMKNTDG--LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIY 240 (406)
Q Consensus 163 ~f~~a~~~l~~~~~~~~~--~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~ 240 (406)
-+++|+..+...+...|. ...+|...+.+....| +++.|..+|++++...|+++.+|...+......|+++.|..+|
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG-EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344444444433333344 5678888999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHh
Q 015472 241 KRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (406)
Q Consensus 241 ~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~a~~k 279 (406)
++++.. .| ....+|..........|+.+......++
T Consensus 275 ~~al~~-~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 310 (368)
T 1fch_A 275 RRALEL-QP--GYIRSRYNLGISCINLGAHREAVEHFLE 310 (368)
T ss_dssp HHHHHH-CT--TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHh-CC--CcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999984 33 2346666666667777887664443433
No 23
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.55 E-value=3.5e-12 Score=130.79 Aligned_cols=249 Identities=10% Similarity=0.005 Sum_probs=169.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015472 26 YMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERS 105 (406)
Q Consensus 26 w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~ 105 (406)
|...+....+.|+++.+..+|++++.. |.++..|...+..+...+ ..+.|..+|++++...|....+|..++..+. .
T Consensus 275 ~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~ 351 (597)
T 2xpi_A 275 YMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRS-RFIDVLAITTKILEIDPYNLDVYPLHLASLH-E 351 (597)
T ss_dssp HHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCCTTHHHHHHHHH-H
T ss_pred HHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHcCcccHHHHHHHHHHHH-H
Confidence 333344445567889999999999987 889999999998887654 6889999999999999988889988887554 5
Q ss_pred cCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHH--------HHHHHHh--ccccchhhhhH---HHHHHHHHHHHHHHh
Q 015472 106 RASEEEISTVFEKSLLCAFSTFEEYLDLFLTRID--------GLRRRIL--FSGEVEGVLDY---SLIRETFQRASDYLS 172 (406)
Q Consensus 106 ~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~--------~l~Rr~~--~~~~~e~~~~~---~~~r~~f~~a~~~l~ 172 (406)
.++.++|..+|++++...+.....+..+...+.. .+.+++. .+.....+..+ -....-+++|+..+.
T Consensus 352 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 431 (597)
T 2xpi_A 352 SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYT 431 (597)
T ss_dssp HTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8999999999999998666544333332211110 0011111 12111111000 001112333333333
Q ss_pred hhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccC---
Q 015472 173 EQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFT--- 249 (406)
Q Consensus 173 ~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~--- 249 (406)
......+.....|...+......| +++.|..+|++++...|+++.+|...+......|+++.|..+|++++.. .+
T Consensus 432 ~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~ 509 (597)
T 2xpi_A 432 TAARLFQGTHLPYLFLGMQHMQLG-NILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL-VKKTQ 509 (597)
T ss_dssp HHHHTTTTCSHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHSC
T ss_pred HHHHhCccchHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-hhccc
Confidence 332223445567888888888888 8999999999999998888889999999999999999999999998874 21
Q ss_pred CCCh--HHHHHHHHHHHHHhCCHHHHHHHHHh
Q 015472 250 GTGS--EDICHAWLRFEREYGTLEDFDHSVQK 279 (406)
Q Consensus 250 ~~~~--~~i~~~~i~fE~~~G~~e~~~~a~~k 279 (406)
.+.. ..+|..........|+.+......++
T Consensus 510 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (597)
T 2xpi_A 510 SNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541 (597)
T ss_dssp CCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 1111 46788888888888988775554444
No 24
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.54 E-value=6.4e-12 Score=124.05 Aligned_cols=261 Identities=11% Similarity=-0.020 Sum_probs=176.5
Q ss_pred hhhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHH
Q 015472 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (406)
Q Consensus 3 ~~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vye 82 (406)
.+...|+.+|...| .+...|...+......|+++.+...|++++...|.++..|..++..+...+ ..+.|..+|+
T Consensus 44 ~A~~~~~~~l~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~ 118 (450)
T 2y4t_A 44 DALSQFHAAVDGDP----DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQG-KLDEAEDDFK 118 (450)
T ss_dssp HHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC----ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHH
Confidence 35678888888776 257788888888889999999999999999999999999999998877654 6788999999
Q ss_pred HHHHhCCCCH---HHHHHHHHH-----------HHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHH--------H
Q 015472 83 RATKNCPWVG---ELWVRSLLS-----------LERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRID--------G 140 (406)
Q Consensus 83 rA~~~~P~~~---~lW~~y~~~-----------lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~--------~ 140 (406)
+++...|... ..|..++.. .....+++++|..+|++++...|.....+..+...+.. .
T Consensus 119 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 198 (450)
T 2y4t_A 119 KVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 198 (450)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHH
T ss_pred HHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999887 777765321 12347899999999999998766544333322211110 0
Q ss_pred HHHHHh--ccccch----------hhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHH------------HHHHHHcC
Q 015472 141 LRRRIL--FSGEVE----------GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYW------------AHLEQSMG 196 (406)
Q Consensus 141 l~Rr~~--~~~~~e----------~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~------------a~~e~~~~ 196 (406)
..++++ .+.... ..+++..+...|++++.. .|.....+..+ +......|
T Consensus 199 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (450)
T 2y4t_A 199 DLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL-------DQDHKRCFAHYKQVKKLNKLIESAEELIRDG 271 (450)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 001111 111111 112333344444444432 23333444444 66666777
Q ss_pred CCHHHHHHHHHHHHHhccchH----HHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHH
Q 015472 197 KDMVSARGVWERLLKISGAML----EAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLED 272 (406)
Q Consensus 197 ~d~~~Ar~ife~al~~~~~~~----~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~ 272 (406)
+++.|..+|++++...|+++ .+|...+.+....|+++.|..+|++++.. .| ....+|..........|+.+.
T Consensus 272 -~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p--~~~~~~~~l~~~~~~~~~~~~ 347 (450)
T 2y4t_A 272 -RYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EP--DNVNALKDRAEAYLIEEMYDE 347 (450)
T ss_dssp -CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CT--TCHHHHHHHHHHHHHTTCHHH
T ss_pred -CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-Cc--ccHHHHHHHHHHHHHhcCHHH
Confidence 78888888888888877764 36677777777888888888888888873 33 235677777777777888766
Q ss_pred HHHHHHh
Q 015472 273 FDHSVQK 279 (406)
Q Consensus 273 ~~~a~~k 279 (406)
...+.++
T Consensus 348 A~~~~~~ 354 (450)
T 2y4t_A 348 AIQDYET 354 (450)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544444
No 25
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.52 E-value=9.4e-12 Score=113.06 Aligned_cols=206 Identities=12% Similarity=0.042 Sum_probs=166.7
Q ss_pred Chhh-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHH
Q 015472 19 DSEK-FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVR 97 (406)
Q Consensus 19 ~~~~-~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~ 97 (406)
+|.. ...|...+......|+++.+...|++++..+|.+..+|..++..+... +..+.|..+|++++...|....+|..
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~ 110 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTE-MEPKLADEEYRKALASDSRNARVLNN 110 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence 4454 778998888888999999999999999999999999999999877654 46889999999999999999999999
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh--CccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhh
Q 015472 98 SLLSLERSRASEEEISTVFEKSLL--CAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQM 175 (406)
Q Consensus 98 y~~~lE~~~~~~e~ar~if~~al~--~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~ 175 (406)
++..+ ...+++++|..+|++++. ..+.....+..+...+. . .++++.+...|++++..
T Consensus 111 la~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~-----~---------~g~~~~A~~~~~~~~~~----- 170 (252)
T 2ho1_A 111 YGGFL-YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSL-----Q---------MKKPAQAKEYFEKSLRL----- 170 (252)
T ss_dssp HHHHH-HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH-----H---------TTCHHHHHHHHHHHHHH-----
T ss_pred HHHHH-HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHH-----H---------cCCHHHHHHHHHHHHhc-----
Confidence 88755 458999999999999998 44433333322221110 1 14455677777777664
Q ss_pred cCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccC
Q 015472 176 KNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFT 249 (406)
Q Consensus 176 ~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~ 249 (406)
.+....++..++.+....| +++.|..+|++++...|++...|...+.+....|+++.|..+|++++.. .|
T Consensus 171 --~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~p 240 (252)
T 2ho1_A 171 --NRNQPSVALEMADLLYKER-EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL-YP 240 (252)
T ss_dssp --CSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT
T ss_pred --CcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-CC
Confidence 2344567888899999999 9999999999999999999999999999999999999999999999974 44
No 26
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.52 E-value=1.7e-11 Score=108.56 Aligned_cols=203 Identities=12% Similarity=0.034 Sum_probs=163.0
Q ss_pred hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHH
Q 015472 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSL 99 (406)
Q Consensus 20 ~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~ 99 (406)
+.....|...+......|+++.+...|++++..+|.++.+|..++..+...+ ..+.+..+|++++...|....+|..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLK-VNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 4567889999999999999999999999999999999999999998776544 678999999999999999999999988
Q ss_pred HHHHHcc-CCHHHHHHHHHHHHh--CccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhc
Q 015472 100 LSLERSR-ASEEEISTVFEKSLL--CAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMK 176 (406)
Q Consensus 100 ~~lE~~~-~~~e~ar~if~~al~--~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~ 176 (406)
..+ ... +++++|..+|++++. ..+.....+..+...+. ..+++..+...|++++..
T Consensus 84 ~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------------~~~~~~~A~~~~~~~~~~------ 142 (225)
T 2vq2_A 84 WFL-CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSA--------------KQGQFGLAEAYLKRSLAA------ 142 (225)
T ss_dssp HHH-HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHH--------------HTTCHHHHHHHHHHHHHH------
T ss_pred HHH-HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHH--------------HcCCHHHHHHHHHHHHHh------
Confidence 755 467 999999999999999 32322333322221110 114555677777777664
Q ss_pred CCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 177 NTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG-AMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 177 ~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~-~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
.+.....|...+.+....| +++.|..+|++++...| ++...|...+.+....|+.+.+..+++.++..
T Consensus 143 -~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 143 -QPQFPPAFKELARTKMLAG-QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp -STTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCCchHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 2344567888888888899 89999999999999999 88888888888888999999999999998863
No 27
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=1.3e-12 Score=117.66 Aligned_cols=218 Identities=11% Similarity=0.012 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015472 24 QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLE 103 (406)
Q Consensus 24 ~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE 103 (406)
..|...+......|+++.+..+|++++..+|.+..+|..++..+...+ ..+.+...|++++...|....+|..++..+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~- 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVN-ELERALAFYDKALELDSSAATAYYGAGNVY- 101 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCcchHHHHHHHHHH-
Confidence 456666666677899999999999999999999999999998777544 688999999999999999999999988754
Q ss_pred HccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHH
Q 015472 104 RSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLR 183 (406)
Q Consensus 104 ~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~ 183 (406)
...+++++|..+|++++...+.....+..+...+. ..++++.+...|++++.. .+....
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~--------------~~~~~~~A~~~~~~~~~~-------~~~~~~ 160 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLV--------------KLEQPKLALPYLQRAVEL-------NENDTE 160 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH--------------HTSCHHHHHHHHHHHHHH-------CTTCHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------------HhccHHHHHHHHHHHHHh-------CCccHH
Confidence 45899999999999999976654443332221110 114555677777777664 234456
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHH
Q 015472 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRF 263 (406)
Q Consensus 184 l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~f 263 (406)
++..++.+....| +++.|..+|++++...|+++.+|..++.+....|+++.|..+|++++.. .|. ...++.....+
T Consensus 161 ~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~p~--~~~~~~~~~~l 236 (243)
T 2q7f_A 161 ARFQFGMCLANEG-MLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI-QPD--HMLALHAKKLL 236 (243)
T ss_dssp HHHHHHHHHHHHT-CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH-CTT--CHHHHHHHTC-
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc-Ccc--hHHHHHHHHHH
Confidence 8888999999999 9999999999999999999999999999999999999999999999984 332 45666665555
Q ss_pred HHHhC
Q 015472 264 EREYG 268 (406)
Q Consensus 264 E~~~G 268 (406)
....|
T Consensus 237 ~~~~~ 241 (243)
T 2q7f_A 237 GHHHH 241 (243)
T ss_dssp -----
T ss_pred Hhhcc
Confidence 55444
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.50 E-value=2.3e-11 Score=114.18 Aligned_cols=218 Identities=10% Similarity=0.022 Sum_probs=148.5
Q ss_pred CHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHH
Q 015472 56 SSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFL 135 (406)
Q Consensus 56 ~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~ 135 (406)
+...|...+..+...+ ..+.|..+|++++...|....+|...+..+ ...+++++|...|++++...|.....+..+..
T Consensus 20 ~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLA-NLAEAALAFEAVCQAAPEREEAWRSLGLTQ-AENEKDGLAIIALNHARMLDPKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence 4456777776666544 678999999999999999999999988754 45899999999999999977654443333221
Q ss_pred HHHH--------HHHHHHhc--cccchhh-----------------hh-HHHHHHHHHHHHHHHhhhhcCCchHHHHHHH
Q 015472 136 TRID--------GLRRRILF--SGEVEGV-----------------LD-YSLIRETFQRASDYLSEQMKNTDGLLRLYAY 187 (406)
Q Consensus 136 ~~~~--------~l~Rr~~~--~~~~e~~-----------------~~-~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~ 187 (406)
.+.. ...++++. +...... .. +-....-+++|+.++...+...+....++..
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 177 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHAS 177 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 1110 00111111 1110000 00 0011123344444433333334455678888
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHh
Q 015472 188 WAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREY 267 (406)
Q Consensus 188 ~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~ 267 (406)
.+.+....| +++.|..+|++++...|+++.+|...+......|+++.|..+|++++.. .|. ...+|..........
T Consensus 178 la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~--~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 178 LGVLYNLSN-NYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI-NPG--YVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--CHHHHHHHHHHHHHT
T ss_pred HHHHHHHhc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCC--CHHHHHHHHHHHHHh
Confidence 999999999 9999999999999999999999999999999999999999999999984 332 345666666777778
Q ss_pred CCHHHHHHHHHh
Q 015472 268 GTLEDFDHSVQK 279 (406)
Q Consensus 268 G~~e~~~~a~~k 279 (406)
|+.+......++
T Consensus 254 g~~~~A~~~~~~ 265 (327)
T 3cv0_A 254 SQYDLAAKQLVR 265 (327)
T ss_dssp TCHHHHHHHHHH
T ss_pred ccHHHHHHHHHH
Confidence 887665444433
No 29
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.50 E-value=6.1e-12 Score=123.61 Aligned_cols=223 Identities=8% Similarity=-0.043 Sum_probs=173.5
Q ss_pred ChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHH
Q 015472 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRS 98 (406)
Q Consensus 19 ~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y 98 (406)
+|....+|..........|+++.|..+|+++|..+|.+..+|...+..+...+++.+.+...|++|+...|.+..+|...
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~ 172 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR 172 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 46778899999998899999999999999999999999999999998887655448999999999999999999999999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCC
Q 015472 99 LLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNT 178 (406)
Q Consensus 99 ~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~ 178 (406)
+..+. ..+++++|...|++||...|.....+..+.... .+. ++++.+...|++++.. .
T Consensus 173 g~~~~-~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~-----~~~---------g~~~eAl~~~~~al~l-------~ 230 (382)
T 2h6f_A 173 RVLVE-WLRDPSQELEFIADILNQDAKNYHAWQHRQWVI-----QEF---------KLWDNELQYVDQLLKE-------D 230 (382)
T ss_dssp HHHHH-HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHH-----HHH---------TCCTTHHHHHHHHHHH-------C
T ss_pred HHHHH-HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHH-----HHc---------CChHHHHHHHHHHHHh-------C
Confidence 98554 579999999999999998887555544333211 111 2334566777777765 4
Q ss_pred chHHHHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHhccchHHHHHHHHHHHHHcc--cHHHHHHHHHHHHhcccCCC
Q 015472 179 DGLLRLYAYWAHLEQSMGKDMVSA-----RGVWERLLKISGAMLEAWQSYISMEIELD--HINEARSIYKRCYSKRFTGT 251 (406)
Q Consensus 179 ~~~~~l~~~~a~~e~~~~~d~~~A-----r~ife~al~~~~~~~~lW~~y~~~E~~~g--~~~~ar~l~~ral~~~~~~~ 251 (406)
|.+...|...+.+...+++..+.| ...|++++...|++...|.....+....| +++.|...+.++ .. -|
T Consensus 231 P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p-- 306 (382)
T 2h6f_A 231 VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SH-- 306 (382)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TC--
T ss_pred CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CC--
Confidence 556778999998888855354666 58999999999999999999998888877 688999888887 42 22
Q ss_pred ChHHHHHHHHHHHHHh
Q 015472 252 GSEDICHAWLRFEREY 267 (406)
Q Consensus 252 ~~~~i~~~~i~fE~~~ 267 (406)
....++......-...
T Consensus 307 ~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 307 SSPYLIAFLVDIYEDM 322 (382)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 2345555444443333
No 30
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.49 E-value=3.4e-11 Score=108.98 Aligned_cols=224 Identities=6% Similarity=-0.117 Sum_probs=174.9
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCC-------HH
Q 015472 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV-------GE 93 (406)
Q Consensus 21 ~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~-------~~ 93 (406)
...+.|...+......|+++.+...|++++..+ .++.+|...+..+...+ ..+.|...|++|+...|.. ..
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKG-EYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 356688888888889999999999999999999 89999999998777644 6889999999999988765 57
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhh
Q 015472 94 LWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSE 173 (406)
Q Consensus 94 lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~ 173 (406)
+|...+..+ ...+++++|...|++++...+. ...+.. .+++..+...|++++..
T Consensus 81 ~~~~l~~~~-~~~~~~~~A~~~~~~a~~~~~~-~~~~~~---------------------~~~~~~a~~~~~~~~~~--- 134 (258)
T 3uq3_A 81 SFARIGNAY-HKLGDLKKTIEYYQKSLTEHRT-ADILTK---------------------LRNAEKELKKAEAEAYV--- 134 (258)
T ss_dssp HHHHHHHHH-HHTTCHHHHHHHHHHHHHHCCC-HHHHHH---------------------HHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHH-HHcccHHHHHHHHHHHHhcCch-hHHHHH---------------------HhHHHHHHHHHHHHHHc---
Confidence 888888744 4589999999999999986554 111111 02223444455554442
Q ss_pred hhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCCh
Q 015472 174 QMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGS 253 (406)
Q Consensus 174 ~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~ 253 (406)
.+....+|...+.+....| +++.|...|++++...|+++.+|...+......|+++.|..+|++++.. .|. .
T Consensus 135 ----~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~--~ 206 (258)
T 3uq3_A 135 ----NPEKAEEARLEGKEYFTKS-DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-DPN--F 206 (258)
T ss_dssp ----CHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--C
T ss_pred ----CcchHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CHH--H
Confidence 4556678889999999999 9999999999999999999999999999999999999999999999984 332 3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHhh
Q 015472 254 EDICHAWLRFEREYGTLEDFDHSVQKV 280 (406)
Q Consensus 254 ~~i~~~~i~fE~~~G~~e~~~~a~~k~ 280 (406)
..+|......-...|+.+.....+++.
T Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 207 VRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456666666667778876654444443
No 31
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.49 E-value=8e-12 Score=108.37 Aligned_cols=168 Identities=14% Similarity=0.078 Sum_probs=130.7
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHH
Q 015472 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLL 100 (406)
Q Consensus 21 ~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~ 100 (406)
+...+|...+......|+++.|...|+++|..+|.++..|...+..+...+ ..+.+...+.+++...|....+|...+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIG-LPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 346688888888888999999999999999999999999999888776544 6788999999999999988888888776
Q ss_pred HHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCch
Q 015472 101 SLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDG 180 (406)
Q Consensus 101 ~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~ 180 (406)
.+ ...++++.+...|.+++...|.
T Consensus 82 ~~-~~~~~~~~a~~~~~~a~~~~~~------------------------------------------------------- 105 (184)
T 3vtx_A 82 AN-FMIDEKQAAIDALQRAIALNTV------------------------------------------------------- 105 (184)
T ss_dssp HH-HHTTCHHHHHHHHHHHHHHCTT-------------------------------------------------------
T ss_pred HH-HHcCCHHHHHHHHHHHHHhCcc-------------------------------------------------------
Confidence 43 3466777777666666554332
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 181 ~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
...+|...+.+....| +++.|...|++++..+|+++.+|...+......|+++.|...|++|+..
T Consensus 106 ~~~~~~~lg~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 106 YADAYYKLGLVYDSMG-EHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHhC-CchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 2234445556666777 7888888888888888888888888888888888888888888888863
No 32
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.47 E-value=1.2e-11 Score=121.57 Aligned_cols=247 Identities=8% Similarity=-0.043 Sum_probs=180.4
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHH
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGD-PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~-~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vye 82 (406)
+...|+.+|...| .+..+|...+......|. ++.+...|+++|..+|.++.+|...+..+...+ ..+.+...|+
T Consensus 116 Al~~~~~al~l~P----~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g-~~~eAl~~~~ 190 (382)
T 2h6f_A 116 AFKLTRDAIELNA----ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLR-DPSQELEFIA 190 (382)
T ss_dssp HHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CCTTHHHHHH
T ss_pred HHHHHHHHHHhCc----cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcc-CHHHHHHHHH
Confidence 5567888888887 468899999999999996 999999999999999999999999998887654 6789999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHH
Q 015472 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRE 162 (406)
Q Consensus 83 rA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~ 162 (406)
+|+...|.+...|...+..+. ..+.+++|...|+++|...|.....+..+...+. .+... .+. .-+.....
T Consensus 191 kal~ldP~~~~a~~~lg~~~~-~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~-----~l~~~--~~e-A~~~~el~ 261 (382)
T 2h6f_A 191 DILNQDAKNYHAWQHRQWVIQ-EFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVIS-----NTTGY--NDR-AVLEREVQ 261 (382)
T ss_dssp HHHHHCTTCHHHHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH-----HTTCS--CSH-HHHHHHHH
T ss_pred HHHHhCccCHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HhcCc--chH-HHHHHHHH
Confidence 999999999999999987554 5789999999999999987765444443332211 11110 000 00011135
Q ss_pred HHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcc--------c-
Q 015472 163 TFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGK-DMVSARGVWERLLKISGAMLEAWQSYISMEIELD--------H- 232 (406)
Q Consensus 163 ~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~-d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g--------~- 232 (406)
.|.+|+.. .|.+...|...+.+....|. ++..|...++.+ ...|+++.++...+.+....| +
T Consensus 262 ~~~~Al~l-------~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~ 333 (382)
T 2h6f_A 262 YTLEMIKL-------VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDI 333 (382)
T ss_dssp HHHHHHHH-------STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHH-------CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence 56666654 45566789888887777662 578899999887 778998888888888877764 3
Q ss_pred HHHHHHHHHHH-HhcccCCCChHHHHHHHHH-HHHHhCCHHHHHH
Q 015472 233 INEARSIYKRC-YSKRFTGTGSEDICHAWLR-FEREYGTLEDFDH 275 (406)
Q Consensus 233 ~~~ar~l~~ra-l~~~~~~~~~~~i~~~~i~-fE~~~G~~e~~~~ 275 (406)
++.|..+|+++ +.. .+.....|..... +...|++.++-..
T Consensus 334 ~~~A~~~~~~l~~~~---DP~r~~~w~~~~~~l~~~~~~~~~~~~ 375 (382)
T 2h6f_A 334 LNKALELCEILAKEK---DTIRKEYWRYIGRSLQSKHSTENDSPT 375 (382)
T ss_dssp HHHHHHHHHHHHHTT---CGGGHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHHHh---CchhHHHHHHHHHHHHHHhccCCCCCC
Confidence 58999999999 763 2334567776665 5666776555433
No 33
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.47 E-value=4.9e-13 Score=110.95 Aligned_cols=62 Identities=11% Similarity=0.243 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 183 ~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
.+|+.||.++ .++ |+++||.+|+.|++.+..-+.+|+.|++||+++|++..||+++.+|+..
T Consensus 62 ~LWIrYA~~~-ei~-D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 62 RIQVRFAELK-AIQ-EPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp HHHHHHHHHH-HHH-CGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-Hhc-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 3777777774 346 8999999999998876656789999999999999999999999999983
No 34
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.45 E-value=6.3e-11 Score=119.50 Aligned_cols=258 Identities=10% Similarity=-0.030 Sum_probs=166.4
Q ss_pred hhhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHH
Q 015472 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (406)
Q Consensus 3 ~~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vye 82 (406)
.+...|+.+|...| .+...|...+......|+++.|...|++++..+|.++..|..++..+...+ ..+.|...|+
T Consensus 43 ~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~ 117 (537)
T 3fp2_A 43 EAIKYYQYAIELDP----NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLG-NFTDAMFDLS 117 (537)
T ss_dssp -CHHHHHHHHHHCT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHH
T ss_pred HHHHHHHHHHhhCC----CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcC-CHHHHHHHHH
Confidence 45678888888876 246788888888888899999999999999999999999998888776544 5667777774
Q ss_pred HHHHhCCCCHHHH-------------------------------------------------------------------
Q 015472 83 RATKNCPWVGELW------------------------------------------------------------------- 95 (406)
Q Consensus 83 rA~~~~P~~~~lW------------------------------------------------------------------- 95 (406)
++...|.....|
T Consensus 118 -~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (537)
T 3fp2_A 118 -VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALL 196 (537)
T ss_dssp -HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHH
T ss_pred -HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHH
Confidence 665554332211
Q ss_pred -HHHHHH-------HHHccCCHHHHHHHHHHHHhCccccHHHHHH---HHH--HHH-----------HHHHHHHh--ccc
Q 015472 96 -VRSLLS-------LERSRASEEEISTVFEKSLLCAFSTFEEYLD---LFL--TRI-----------DGLRRRIL--FSG 149 (406)
Q Consensus 96 -~~y~~~-------lE~~~~~~e~ar~if~~al~~~~~~~~~~~~---l~~--~~~-----------~~l~Rr~~--~~~ 149 (406)
..+... +....+++++|..+|++++...|.....+.. .+. ..+ ..+ ++++ .+.
T Consensus 197 ~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~-~~~~~~~~~ 275 (537)
T 3fp2_A 197 SDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLL-QESINLHPT 275 (537)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHCCC
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHH-HHHHhcCCC
Confidence 111110 0011135778888888888876653221111 110 000 000 1111 011
Q ss_pred cch----------hhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHH
Q 015472 150 EVE----------GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEA 219 (406)
Q Consensus 150 ~~e----------~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~l 219 (406)
.. ..+++..+...|++++.. .+....+|...+.+....| +++.|...|++++...|+++.+
T Consensus 276 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~ 346 (537)
T 3fp2_A 276 -PNSYIFLALTLADKENSQEFFKFFQKAVDL-------NPEYPPTYYHRGQMYFILQ-DYKNAKEDFQKAQSLNPENVYP 346 (537)
T ss_dssp -HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCSHH
T ss_pred -chHHHHHHHHHHHhcCHHHHHHHHHHHhcc-------CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHH
Confidence 00 012233444555555443 3445668888999988899 9999999999999999999999
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHh
Q 015472 220 WQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (406)
Q Consensus 220 W~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~a~~k 279 (406)
|...+......|+++.|..+|++++.. .|. ...+|..........|+.+......++
T Consensus 347 ~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 347 YIQLACLLYKQGKFTESEAFFNETKLK-FPT--LPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--CTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC--ChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999999999999999984 443 345677777777788987765544444
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.45 E-value=1.7e-11 Score=110.29 Aligned_cols=203 Identities=11% Similarity=-0.010 Sum_probs=145.8
Q ss_pred CCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHH
Q 015472 53 FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLD 132 (406)
Q Consensus 53 ~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~ 132 (406)
.|.++..|...+..+...+ ..+.|...|++|+...|.+...|..++..+ ...+++++|...|++++...|.....+..
T Consensus 1 ~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~lg~~~-~~~g~~~~A~~~~~~al~~~P~~~~a~~~ 78 (217)
T 2pl2_A 1 MQTAEQNPLRLGVQLYALG-RYDAALTLFERALKENPQDPEALYWLARTQ-LKLGLVNPALENGKTLVARTPRYLGGYMV 78 (217)
T ss_dssp ---CCHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTSSSCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 3888999999998877654 678999999999999999999999999755 45899999999999999988876555544
Q ss_pred HHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 015472 133 LFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (406)
Q Consensus 133 l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~ 212 (406)
+...+... ...........+++..+...|++++.. .|....+|...+.+....| +++.|...|++++..
T Consensus 79 lg~~~~~~---~~~~~~~~~~~g~~~~A~~~~~~al~~-------~P~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 79 LSEAYVAL---YRQAEDRERGKGYLEQALSVLKDAERV-------NPRYAPLHLQRGLVYALLG-ERDKAEASLKQALAL 147 (217)
T ss_dssp HHHHHHHH---HHTCSSHHHHHHHHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHh---hhhhhhhcccccCHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhc
Confidence 43322110 000000000013344455555555553 4566778999999999999 999999999999999
Q ss_pred ccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHH
Q 015472 213 SGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLED 272 (406)
Q Consensus 213 ~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~ 272 (406)
. +++.+|...+......|+++.|...|++++.. .|. ...++......-...|+.+.
T Consensus 148 ~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~P~--~~~~~~~la~~~~~~g~~~~ 203 (217)
T 2pl2_A 148 E-DTPEIRSALAELYLSMGRLDEALAQYAKALEQ-APK--DLDLRVRYASALLLKGKAEE 203 (217)
T ss_dssp C-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STT--CHHHHHHHHHHHTC------
T ss_pred c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC--ChHHHHHHHHHHHHccCHHH
Confidence 9 89999999999999999999999999999984 332 34555555555555566544
No 36
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.45 E-value=8.5e-11 Score=107.67 Aligned_cols=217 Identities=11% Similarity=0.004 Sum_probs=165.7
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHH
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyer 83 (406)
+...|+.+|...+..++.....|...+......|+++.+...|++++..+|.++.+|...+..+... +..+.|...|++
T Consensus 24 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~ 102 (275)
T 1xnf_A 24 ILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA-GNFDAAYEAFDS 102 (275)
T ss_dssp HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc-cCHHHHHHHHHH
Confidence 4567888887754333567788999999999999999999999999999999999999999887764 478899999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHH
Q 015472 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRET 163 (406)
Q Consensus 84 A~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~ 163 (406)
|+...|....+|..++..+ ...+++++|..+|++++...|......+.+. .+ . . .+++..+...
T Consensus 103 al~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~--~~--~--~---------~~~~~~A~~~ 166 (275)
T 1xnf_A 103 VLELDPTYNYAHLNRGIAL-YYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY--LA--E--Q---------KLDEKQAKEV 166 (275)
T ss_dssp HHHHCTTCTHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH--HH--H--H---------HHCHHHHHHH
T ss_pred HHhcCccccHHHHHHHHHH-HHhccHHHHHHHHHHHHHhCCCChHHHHHHH--HH--H--H---------hcCHHHHHHH
Confidence 9999999999999998755 4589999999999999997665432221111 11 0 0 1344566667
Q ss_pred HHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc----hHHHHHHHHHHHHHcccHHHHHHH
Q 015472 164 FQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA----MLEAWQSYISMEIELDHINEARSI 239 (406)
Q Consensus 164 f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~----~~~lW~~y~~~E~~~g~~~~ar~l 239 (406)
|.+++... ++....|. .+.+....+ +.+.|...|++++...|. .+.+|...+......|+++.|..+
T Consensus 167 ~~~~~~~~-------~~~~~~~~-~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 237 (275)
T 1xnf_A 167 LKQHFEKS-------DKEQWGWN-IVEFYLGNI-SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATAL 237 (275)
T ss_dssp HHHHHHHS-------CCCSTHHH-HHHHHTTSS-CHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhcC-------CcchHHHH-HHHHHHHhc-CHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHH
Confidence 76666542 11111232 444445556 788999999999987664 368999999999999999999999
Q ss_pred HHHHHhc
Q 015472 240 YKRCYSK 246 (406)
Q Consensus 240 ~~ral~~ 246 (406)
|++++..
T Consensus 238 ~~~al~~ 244 (275)
T 1xnf_A 238 FKLAVAN 244 (275)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 9999974
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.43 E-value=2.6e-11 Score=111.27 Aligned_cols=227 Identities=11% Similarity=0.006 Sum_probs=130.1
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHhcchhhhHHH
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD----LWLDYTQYLDKTLKVGNVVRD 79 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~----lW~~Y~~~l~~~~~~~e~a~~ 79 (406)
+...|+.+|...|. ....|...+......|+++.+...|++++. .|.++. .|...+...... +..+.|..
T Consensus 22 A~~~~~~~l~~~p~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~-~~~~~A~~ 95 (272)
T 3u4t_A 22 AIEVFNKLEAKKYN----SPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKK-GQDSLAIQ 95 (272)
T ss_dssp HHHHHHHHHHTTCC----CSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred HHHHHHHHHHhCCC----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHc-ccHHHHHH
Confidence 44566666666552 233455555556666777777777777776 343333 366666555543 35566777
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHH-HHHHHHHHHHHhccccchhhhhHH
Q 015472 80 VYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLF-LTRIDGLRRRILFSGEVEGVLDYS 158 (406)
Q Consensus 80 vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~-~~~~~~l~Rr~~~~~~~e~~~~~~ 158 (406)
.|++|+...|....+|..++..+ ...+++++|...|++++...|.....+..+. ..+. ..++.
T Consensus 96 ~~~~a~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~---------------~~~~~ 159 (272)
T 3u4t_A 96 QYQAAVDRDTTRLDMYGQIGSYF-YNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY---------------NKEYV 159 (272)
T ss_dssp HHHHHHHHSTTCTHHHHHHHHHH-HHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH---------------TTCHH
T ss_pred HHHHHHhcCcccHHHHHHHHHHH-HHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH---------------HHHHH
Confidence 77777777776666776666533 3466677777777777766554443333322 1110 02344
Q ss_pred HHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHhc---cc-----hHHHHHHHHHHH
Q 015472 159 LIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKD---MVSARGVWERLLKIS---GA-----MLEAWQSYISME 227 (406)
Q Consensus 159 ~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d---~~~Ar~ife~al~~~---~~-----~~~lW~~y~~~E 227 (406)
.+...|+++++. .|.....+...+.+....+ + .+.|...|++++... |+ ...+|...+.+.
T Consensus 160 ~A~~~~~~a~~~-------~p~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (272)
T 3u4t_A 160 KADSSFVKVLEL-------KPNIYIGYLWRARANAAQD-PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYY 231 (272)
T ss_dssp HHHHHHHHHHHH-------STTCHHHHHHHHHHHHHHS-TTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-------CccchHHHHHHHHHHHHcC-cchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 555566666554 2333445555666665555 4 666777777777764 33 225666666667
Q ss_pred HHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHH
Q 015472 228 IELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRF 263 (406)
Q Consensus 228 ~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~f 263 (406)
...|+++.|..+|++++.. .| .....++....+
T Consensus 232 ~~~~~~~~A~~~~~~al~~-~p--~~~~a~~~l~~~ 264 (272)
T 3u4t_A 232 TINRDKVKADAAWKNILAL-DP--TNKKAIDGLKMK 264 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CT--TCHHHHHHHC--
T ss_pred HHcCCHHHHHHHHHHHHhc-Cc--cHHHHHHHhhhh
Confidence 7777777777777777763 23 234455544433
No 38
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.42 E-value=7e-11 Score=118.20 Aligned_cols=244 Identities=9% Similarity=0.052 Sum_probs=179.4
Q ss_pred hhHHHHHHHh-----c--CCCC---ChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcch
Q 015472 4 ARAHLEEQIS-----R--QDLS---DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKV 73 (406)
Q Consensus 4 ~R~~yE~~L~-----~--~~~~---~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~ 73 (406)
+...|+.++. . .|.. ++.....|...+......|+++.+..+|++++...|. ..+|...+..+... +.
T Consensus 208 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~-~~ 285 (514)
T 2gw1_A 208 ADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADR-ND 285 (514)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTS-SC
T ss_pred HHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHC-CC
Confidence 4556777776 3 3311 1456678888888888999999999999999999999 99999998877754 46
Q ss_pred hhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchh
Q 015472 74 GNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEG 153 (406)
Q Consensus 74 ~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~ 153 (406)
.+.+...|++++...|....+|..++..+ ...+++++|...|++++...|.....+..+...+ . .
T Consensus 286 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~---------~-----~ 350 (514)
T 2gw1_A 286 STEYYNYFDKALKLDSNNSSVYYHRGQMN-FILQNYDQAGKDFDKAKELDPENIFPYIQLACLA---------Y-----R 350 (514)
T ss_dssp CTTGGGHHHHHHTTCTTCTHHHHHHHHHH-HHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHT---------T-----T
T ss_pred HHHHHHHHHHHhhcCcCCHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHH---------H-----H
Confidence 78899999999999999999999888744 4588999999999999997765433333222111 0 1
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHH------HHHHHHHHH
Q 015472 154 VLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE------AWQSYISME 227 (406)
Q Consensus 154 ~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~------lW~~y~~~E 227 (406)
.+++..+...|++++... +....+|..++.+....| +++.|..+|++++...|++.. +|...+...
T Consensus 351 ~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 422 (514)
T 2gw1_A 351 ENKFDDCETLFSEAKRKF-------PEAPEVPNFFAEILTDKN-DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLL 422 (514)
T ss_dssp TTCHHHHHHHHHHHHHHS-------TTCSHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHc-------ccCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 134556666777766542 333457777788888888 888888888888888776643 888888888
Q ss_pred HH---cccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHH
Q 015472 228 IE---LDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDH 275 (406)
Q Consensus 228 ~~---~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~ 275 (406)
.. .|+++.|..+|++++.. .| ....+|..........|+.+....
T Consensus 423 ~~~~~~~~~~~A~~~~~~a~~~-~~--~~~~~~~~la~~~~~~g~~~~A~~ 470 (514)
T 2gw1_A 423 TRNPTVENFIEATNLLEKASKL-DP--RSEQAKIGLAQMKLQQEDIDEAIT 470 (514)
T ss_dssp HTSCCTTHHHHHHHHHHHHHHH-CT--TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhhhcCCHHHHHHHHHHHHHh-Cc--ccHHHHHHHHHHHHHhcCHHHHHH
Confidence 88 88888888888888874 33 234566666666667787666433
No 39
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.42 E-value=3.6e-11 Score=108.10 Aligned_cols=200 Identities=10% Similarity=0.045 Sum_probs=155.3
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHH
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyer 83 (406)
+...|+.+|...| .....|...+......|+++.+...|++++...|.+..+|..++..+... +..+.|..+|++
T Consensus 42 A~~~~~~~l~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~ 116 (243)
T 2q7f_A 42 AAEAFTKAIEENK----EDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVK-EMYKEAKDMFEK 116 (243)
T ss_dssp CCTTHHHHHTTCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHh-ccHHHHHHHHHH
Confidence 4456788887765 34678888888888999999999999999999999999999999887754 468899999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHH
Q 015472 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRET 163 (406)
Q Consensus 84 A~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~ 163 (406)
++...|....+|..++..+ ...+++++|..+|++++...+.....+..+...+. . .+++..+...
T Consensus 117 ~~~~~~~~~~~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-----~---------~~~~~~A~~~ 181 (243)
T 2q7f_A 117 ALRAGMENGDLFYMLGTVL-VKLEQPKLALPYLQRAVELNENDTEARFQFGMCLA-----N---------EGMLDEALSQ 181 (243)
T ss_dssp HHHHTCCSHHHHHHHHHHH-HHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----H---------HTCCHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHH-HHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-----H---------cCCHHHHHHH
Confidence 9999999999999988754 45899999999999999976654443333221111 1 1344567777
Q ss_pred HHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcc
Q 015472 164 FQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELD 231 (406)
Q Consensus 164 f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g 231 (406)
|++++.. .+....+|..++.+....| +++.|..+|++++...|++..+|..+..+....|
T Consensus 182 ~~~~~~~-------~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 182 FAAVTEQ-------DPGHADAFYNAGVTYAYKE-NREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHH-------CTTCHHHHHHHHHHHHHTT-CTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHh-------CcccHHHHHHHHHHHHHcc-CHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 7777664 2344568888999999999 9999999999999999999999988877665443
No 40
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.40 E-value=1.1e-10 Score=117.71 Aligned_cols=221 Identities=11% Similarity=0.027 Sum_probs=169.8
Q ss_pred hhhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHH
Q 015472 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (406)
Q Consensus 3 ~~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vye 82 (406)
.+...|+.++...| . ...|...+......|+++.+...|++++..+|.++.+|...+..+...+ ..+.|...|+
T Consensus 261 ~A~~~~~~~~~~~~----~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~ 334 (537)
T 3fp2_A 261 DAQVLLQESINLHP----T-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ-DYKNAKEDFQ 334 (537)
T ss_dssp HHHHHHHHHHHHCC----C-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC----C-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC-CHHHHHHHHH
Confidence 35567788887776 2 5577777777777899999999999999999999999999998777544 6788999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHH
Q 015472 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRE 162 (406)
Q Consensus 83 rA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~ 162 (406)
+++...|....+|..++..+ ...+++++|..+|++++...|.....+..+...+. ..+++..+..
T Consensus 335 ~a~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~--------------~~g~~~~A~~ 399 (537)
T 3fp2_A 335 KAQSLNPENVYPYIQLACLL-YKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILT--------------DRGDFDTAIK 399 (537)
T ss_dssp HHHHHCTTCSHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH--------------HTTCHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH--------------HhCCHHHHHH
Confidence 99999998888998888754 45889999999999999876654333332221110 1145667888
Q ss_pred HHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHc----------CCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHccc
Q 015472 163 TFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSM----------GKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDH 232 (406)
Q Consensus 163 ~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~----------~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~ 232 (406)
.|++++...+... .....+..+...+.+.... | +++.|...|++++...|++..+|...+.+....|+
T Consensus 400 ~~~~a~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 477 (537)
T 3fp2_A 400 QYDIAKRLEEVQE-KIHVGIGPLIGKATILARQSSQDPTQLDEE-KFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEK 477 (537)
T ss_dssp HHHHHHHHHHHCS-SCSSTTHHHHHHHHHHHHHHTC----CCHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCcch-hhHHHHHHHHHHHHHHHHHhhccchhhhHh-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence 8888887643221 1111222344455666666 7 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 015472 233 INEARSIYKRCYSK 246 (406)
Q Consensus 233 ~~~ar~l~~ral~~ 246 (406)
++.|..+|++++..
T Consensus 478 ~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 478 IDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999984
No 41
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.39 E-value=9.2e-11 Score=117.31 Aligned_cols=230 Identities=11% Similarity=0.023 Sum_probs=180.4
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHH
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyer 83 (406)
+...|+.++...| . ...|...+......|+++.+...|++++..+|.++.+|...+..+...+ ..+.|...|++
T Consensus 256 A~~~~~~~l~~~~----~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~ 329 (514)
T 2gw1_A 256 AHEDIKKAIELFP----R-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ-NYDQAGKDFDK 329 (514)
T ss_dssp HHHHHHHHHHHCC----C-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTT-CTTHHHHHHHH
T ss_pred HHHHHHHHHhhCc----c-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhC-CHHHHHHHHHH
Confidence 5567888888776 2 6678888888889999999999999999999999999999998877644 67899999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHH
Q 015472 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRET 163 (406)
Q Consensus 84 A~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~ 163 (406)
++...|....+|..++..+ ...+++++|..+|.+++...+.....+..+...+. ..+++..+...
T Consensus 330 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~--------------~~~~~~~A~~~ 394 (514)
T 2gw1_A 330 AKELDPENIFPYIQLACLA-YRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILT--------------DKNDFDKALKQ 394 (514)
T ss_dssp HHHTCSSCSHHHHHHHHHT-TTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH--------------HTTCHHHHHHH
T ss_pred HHHhChhhHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHH--------------HCCCHHHHHHH
Confidence 9999999989999988744 46899999999999999876653333332221110 11456677888
Q ss_pred HHHHHHHHhhhhcCCchHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHH
Q 015472 164 FQRASDYLSEQMKNTDGLLRLYAYWAHLEQS---MGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIY 240 (406)
Q Consensus 164 f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~---~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~ 240 (406)
|++++...+... ........|...+.+... .| +++.|...|++++...|+++.+|...+.+....|+++.|..+|
T Consensus 395 ~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 395 YDLAIELENKLD-GIYVGIAPLVGKATLLTRNPTVE-NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHHHTSS-SCSSCSHHHHHHHHHHHTSCCTT-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhhccc-hHHHHHHHHHHHHHHHhhhhhcC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 888877542211 001113478888888888 88 9999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCChHHHHHH
Q 015472 241 KRCYSKRFTGTGSEDICHA 259 (406)
Q Consensus 241 ~ral~~~~~~~~~~~i~~~ 259 (406)
++++.. .| ....++..
T Consensus 473 ~~a~~~-~~--~~~~~~~~ 488 (514)
T 2gw1_A 473 EESADL-AR--TMEEKLQA 488 (514)
T ss_dssp HHHHHH-CS--SHHHHHHH
T ss_pred HHHHHh-cc--ccHHHHHH
Confidence 999984 33 34455544
No 42
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.39 E-value=4.1e-11 Score=120.94 Aligned_cols=102 Identities=14% Similarity=0.047 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHhcCCh-hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHH
Q 015472 22 KFQQYMIYLKYEQSSGDP-GRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLL 100 (406)
Q Consensus 22 ~~~~w~~Yi~~E~~~g~~-~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~ 100 (406)
....|...+......|++ +.|...|++++..+|.++..|...+..+...+ ..+.|...|++|+...|. ...|..++.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~-~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKG-DVTSAHTCFSGALTHCKN-KVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHTTCCC-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCC-HHHHHHHHH
Confidence 455666666666666666 67777777777777777777766666555433 456677777777766666 466666665
Q ss_pred HHHHcc---------CCHHHHHHHHHHHHhCcccc
Q 015472 101 SLERSR---------ASEEEISTVFEKSLLCAFST 126 (406)
Q Consensus 101 ~lE~~~---------~~~e~ar~if~~al~~~~~~ 126 (406)
.+ ... +++++|...|++|+...|..
T Consensus 179 ~~-~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 212 (474)
T 4abn_A 179 VL-RQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD 212 (474)
T ss_dssp HH-TTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HH-HHhccCChhhhhhhHHHHHHHHHHHHHhCCCC
Confidence 33 334 56666666777666655543
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.38 E-value=5.6e-11 Score=109.01 Aligned_cols=230 Identities=6% Similarity=-0.029 Sum_probs=163.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCC----HHHHHHHH
Q 015472 24 QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV----GELWVRSL 99 (406)
Q Consensus 24 ~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~----~~lW~~y~ 99 (406)
+.+..++......|+++.+...|++++..+|.++.+|...+...... +..+.|...|++|+. .|.. ...|..++
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYEL-AKYDLAQKDIETYFS-KVNATKAKSADFEYYG 81 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHT-TCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH-hhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence 45778888888999999999999999999999999999999876654 478899999999999 4433 34588888
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCc
Q 015472 100 LSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTD 179 (406)
Q Consensus 100 ~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~ 179 (406)
..+ ...+++++|...|++++...|.....+..+...+. . .+++..+...|+++ +...+
T Consensus 82 ~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-----~---------~~~~~~A~~~~~~a-------l~~~~ 139 (272)
T 3u4t_A 82 KIL-MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY-----N---------KGNFPLAIQYMEKQ-------IRPTT 139 (272)
T ss_dssp HHH-HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH-----H---------TTCHHHHHHHHGGG-------CCSSC
T ss_pred HHH-HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-----H---------ccCHHHHHHHHHHH-------hhcCC
Confidence 744 45899999999999999977654444433332111 0 13333444444444 43345
Q ss_pred hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHccc---HHHHHHHHHHHHhccc--CCCChH
Q 015472 180 GLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDH---INEARSIYKRCYSKRF--TGTGSE 254 (406)
Q Consensus 180 ~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~---~~~ar~l~~ral~~~~--~~~~~~ 254 (406)
....+|...+......+ +++.|..+|++++...|+++..|...+......|+ ++.|...|++++...- +.+...
T Consensus 140 ~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 218 (272)
T 3u4t_A 140 TDPKVFYELGQAYYYNK-EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKD 218 (272)
T ss_dssp CCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHH
T ss_pred CcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchH
Confidence 56678888884445566 89999999999999999999988888888888887 8889999999997421 211112
Q ss_pred ---HHHHHHHHHHHHhCCHHHHHHHHH
Q 015472 255 ---DICHAWLRFEREYGTLEDFDHSVQ 278 (406)
Q Consensus 255 ---~i~~~~i~fE~~~G~~e~~~~a~~ 278 (406)
.++.....+-...|+.+......+
T Consensus 219 ~~~~~~~~l~~~~~~~~~~~~A~~~~~ 245 (272)
T 3u4t_A 219 ELIEANEYIAYYYTINRDKVKADAAWK 245 (272)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 233333344455677665443333
No 44
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.37 E-value=6.3e-12 Score=104.36 Aligned_cols=102 Identities=14% Similarity=0.212 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHHHHhcCCh------hHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHhcchhhhHHHHHHHHHH
Q 015472 21 EKFQQYMIYLKYEQSSGDP------GRVQLLYERAITDFPVS--------SDLWLDYTQYLDKTLKVGNVVRDVYSRATK 86 (406)
Q Consensus 21 ~~~~~w~~Yi~~E~~~g~~------~~~~~lyEral~~~P~~--------~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~ 86 (406)
.+++.|..|+..+.+.|++ ++++.+|+||+...|.+ ..+|+.|+.|... ++.++++.+|+.|+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei--~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAI--QEPDDARDYFQMARA 88 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHH--HCGGGCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHH
Confidence 4689999999999999999 99999999999998863 5799999999653 578999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccc
Q 015472 87 NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (406)
Q Consensus 87 ~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~ 125 (406)
+|...+.+|++|+. +|.++++...||+++.+|+..++.
T Consensus 89 ~hKkFAKiwi~~Aq-FEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 89 NCKKFAFVHISFAQ-FELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCTTBHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHhccCCC
Confidence 88888999999998 777899999999999999997664
No 45
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.36 E-value=5.5e-10 Score=105.24 Aligned_cols=213 Identities=11% Similarity=-0.012 Sum_probs=151.5
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcchhhhHHHHHHHH
Q 015472 7 HLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITD--FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRA 84 (406)
Q Consensus 7 ~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~--~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA 84 (406)
.|+.+|......++..+.....++.+....|+.+.+...|++.+.. +|.++.+|...+..+...+ ..+.|..+|++
T Consensus 49 ~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g-~~~~Al~~l~~- 126 (291)
T 3mkr_A 49 KYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ-NPDAALRTLHQ- 126 (291)
T ss_dssp CHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT-CHHHHHHHHTT-
T ss_pred CHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC-CHHHHHHHHhC-
Confidence 3566665543233445667777788888888888888888888875 5888888888887766544 67778888887
Q ss_pred HHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHH
Q 015472 85 TKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETF 164 (406)
Q Consensus 85 ~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f 164 (406)
|.+..+|...+..+ ...|+.++|...|++++...|.... ..+...++..+. . .+++..+...|
T Consensus 127 ----~~~~~~~~~l~~~~-~~~g~~~~A~~~l~~~~~~~p~~~~--~~l~~a~~~l~~----~------~~~~~eA~~~~ 189 (291)
T 3mkr_A 127 ----GDSLECMAMTVQIL-LKLDRLDLARKELKKMQDQDEDATL--TQLATAWVSLAA----G------GEKLQDAYYIF 189 (291)
T ss_dssp ----CCSHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHH----C------TTHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhhCcCcHH--HHHHHHHHHHHh----C------chHHHHHHHHH
Confidence 77778888877644 3578888888899888887665322 122222221110 0 13445666777
Q ss_pred HHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHH-HHHHHHHH
Q 015472 165 QRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINE-ARSIYKRC 243 (406)
Q Consensus 165 ~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~-ar~l~~ra 243 (406)
++++.. .|....+|...+......| +++.|...|++++...|+++++|..++.+....|+... +..+++++
T Consensus 190 ~~~l~~-------~p~~~~~~~~la~~~~~~g-~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 190 QEMADK-------CSPTLLLLNGQAACHMAQG-RWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp HHHHHH-------SCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHh-------CCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 777664 2445667888888888888 88999999999999889888888888888888887764 67888888
Q ss_pred Hhc
Q 015472 244 YSK 246 (406)
Q Consensus 244 l~~ 246 (406)
+..
T Consensus 262 ~~~ 264 (291)
T 3mkr_A 262 KDA 264 (291)
T ss_dssp HHH
T ss_pred HHh
Confidence 874
No 46
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.36 E-value=2.8e-10 Score=102.87 Aligned_cols=206 Identities=10% Similarity=-0.016 Sum_probs=162.6
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHhcchhhh
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS-------SDLWLDYTQYLDKTLKVGNV 76 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~-------~~lW~~Y~~~l~~~~~~~e~ 76 (406)
+...|+.+|... . ....|...+......|+++.+...|++++...|.+ +.+|...+..+... +..+.
T Consensus 24 A~~~~~~a~~~~-~----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 97 (258)
T 3uq3_A 24 AIEHYNKAWELH-K----DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKL-GDLKK 97 (258)
T ss_dssp HHHHHHHHHHHS-C----CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT-TCHHH
T ss_pred HHHHHHHHHHhh-c----cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHc-ccHHH
Confidence 556788888776 2 35578888888888999999999999999998876 78898888877754 46889
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhh
Q 015472 77 VRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLD 156 (406)
Q Consensus 77 a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~ 156 (406)
|...|++++...|.. .++. ..++++++...|++++...|.....+..+...+. ..++
T Consensus 98 A~~~~~~a~~~~~~~-~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~ 154 (258)
T 3uq3_A 98 TIEYYQKSLTEHRTA-DILT--------KLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYF--------------TKSD 154 (258)
T ss_dssp HHHHHHHHHHHCCCH-HHHH--------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--------------HTTC
T ss_pred HHHHHHHHHhcCchh-HHHH--------HHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHH--------------HhcC
Confidence 999999999998862 2221 2456888999999999987754433333222111 1145
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHH
Q 015472 157 YSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEA 236 (406)
Q Consensus 157 ~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~a 236 (406)
+..+...|++++.. .+....+|...+.+....| +++.|...|++++...|+++.+|...+......|+++.|
T Consensus 155 ~~~A~~~~~~a~~~-------~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 155 WPNAVKAYTEMIKR-------APEDARGYSNRAAALAKLM-SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp HHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhc-------CcccHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 56777778887765 2444568888999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 015472 237 RSIYKRCYSK 246 (406)
Q Consensus 237 r~l~~ral~~ 246 (406)
...|++++..
T Consensus 227 ~~~~~~a~~~ 236 (258)
T 3uq3_A 227 LETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999974
No 47
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.36 E-value=4.1e-11 Score=126.92 Aligned_cols=171 Identities=12% Similarity=0.089 Sum_probs=137.9
Q ss_pred CChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHH
Q 015472 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVR 97 (406)
Q Consensus 18 ~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~ 97 (406)
+.|.+.+.|...+......|+++.|...|++||..+|.+...|..++..+...+ ..++|...|++|++..|.....|..
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g-~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG-KLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 346788899999999999999999999999999999999999999998887654 6788999999999999999999999
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcC
Q 015472 98 SLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKN 177 (406)
Q Consensus 98 y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~ 177 (406)
++..+. ..+++++|...|++|+...|..
T Consensus 83 Lg~~l~-~~g~~~~A~~~~~kAl~l~P~~--------------------------------------------------- 110 (723)
T 4gyw_A 83 MGNTLK-EMQDVQGALQCYTRAIQINPAF--------------------------------------------------- 110 (723)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHHHHHCTTC---------------------------------------------------
T ss_pred HHHHHH-HcCCHHHHHHHHHHHHHhCCCC---------------------------------------------------
Confidence 987554 5788888888888887754432
Q ss_pred CchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 178 TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 178 ~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
...|..++.+...+| ++++|...|+++++..|+++..|..++......|+++.|...|++++..
T Consensus 111 ----~~a~~~Lg~~~~~~g-~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 111 ----ADAHSNLASIHKDSG-NIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174 (723)
T ss_dssp ----HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHh
Confidence 224444555556677 7888888888888888888888888888888888888888888877763
No 48
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.32 E-value=2.8e-10 Score=114.78 Aligned_cols=214 Identities=11% Similarity=-0.038 Sum_probs=159.8
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchh-hhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHH
Q 015472 39 PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVG-NVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFE 117 (406)
Q Consensus 39 ~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~-e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~ 117 (406)
.+.+...++.++...|.+..+|...+..+... +.. +.|...|++|+...|....+|..++..+ ...+++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~-g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~-~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVT-PDYSPEAEVLLSKAVKLEPELVEAWNQLGEVY-WKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSS-SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhc-cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHH
Confidence 45667788888888899999999999887754 467 8999999999999999999999999755 45899999999999
Q ss_pred HHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHc--
Q 015472 118 KSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSM-- 195 (406)
Q Consensus 118 ~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~-- 195 (406)
+++...|. ...+..+...+ .........+..+++..+...|++++.. .|....+|..++.+....
T Consensus 162 ~al~~~p~-~~~~~~lg~~~-----~~~~~~~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~lg~~~~~~~~ 228 (474)
T 4abn_A 162 GALTHCKN-KVSLQNLSMVL-----RQLQTDSGDEHSRHVMDSVRQAKLAVQM-------DVLDGRSWYILGNAYLSLYF 228 (474)
T ss_dssp HHHTTCCC-HHHHHHHHHHH-----TTCCCSCHHHHHHHHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhCCC-HHHHHHHHHHH-----HHhccCChhhhhhhHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHH
Confidence 99998776 33333222111 0100001111224455666666666654 355567888899888887
Q ss_pred ------CCCHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHH
Q 015472 196 ------GKDMVSARGVWERLLKISG---AMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFERE 266 (406)
Q Consensus 196 ------~~d~~~Ar~ife~al~~~~---~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~ 266 (406)
| +++.|...|++++...| +++.+|..++......|+++.|...|++++.. .|. ....|.........
T Consensus 229 ~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~--~~~a~~~l~~~~~~ 304 (474)
T 4abn_A 229 NTGQNPK-ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL-DPA--WPEPQQREQQLLEF 304 (474)
T ss_dssp HTTCCHH-HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--CHHHHHHHHHHHHH
T ss_pred hhccccc-hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC--CHHHHHHHHHHHHH
Confidence 7 89999999999999999 89999999999999999999999999999984 332 34455555555555
Q ss_pred hCCHH
Q 015472 267 YGTLE 271 (406)
Q Consensus 267 ~G~~e 271 (406)
.|..+
T Consensus 305 lg~~~ 309 (474)
T 4abn_A 305 LSRLT 309 (474)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.32 E-value=5.4e-10 Score=98.72 Aligned_cols=200 Identities=11% Similarity=-0.015 Sum_probs=154.6
Q ss_pred cCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHH
Q 015472 52 DFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYL 131 (406)
Q Consensus 52 ~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~ 131 (406)
..|.++.+|...+..+...+ ..+.+..+|++++...|....+|..++..+ ...+++++|..+|++++...+.....+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 80 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQ-DYRQATASIEDALKSDPKNELAWLVRAEIY-QYLKVNDKAQESFRQALSIKPDSAEINN 80 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhCccchHHHHHHHHHH-HHcCChHHHHHHHHHHHHhCCCChHHHH
Confidence 45778899999998777654 678999999999999999999999988754 4589999999999999997665444333
Q ss_pred HHHHHHHHHHHHHHhccccchhh-hhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 015472 132 DLFLTRIDGLRRRILFSGEVEGV-LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLL 210 (406)
Q Consensus 132 ~l~~~~~~~l~Rr~~~~~~~e~~-~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al 210 (406)
.+...+. .. +++..+...|++++. . + ..+....+|..++.+....| +++.|...|++++
T Consensus 81 ~l~~~~~--------------~~~~~~~~A~~~~~~~~~-~-~---~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 81 NYGWFLC--------------GRLNRPAESMAYFDKALA-D-P---TYPTPYIANLNKGICSAKQG-QFGLAEAYLKRSL 140 (225)
T ss_dssp HHHHHHH--------------TTTCCHHHHHHHHHHHHT-S-T---TCSCHHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHH--------------HhcCcHHHHHHHHHHHHc-C-c---CCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Confidence 3221110 12 345567777777766 1 1 13445678888999999999 9999999999999
Q ss_pred HhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHH
Q 015472 211 KISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDH 275 (406)
Q Consensus 211 ~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~ 275 (406)
...|+++.+|...+......|+++.|..+|++++.. .|.. ....+.....+....|+.+....
T Consensus 141 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~a~~ 203 (225)
T 2vq2_A 141 AAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSR-VEVL-QADDLLLGWKIAKALGNAQAAYE 203 (225)
T ss_dssp HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HCSC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC-CHHHHHHHHHHHHhcCcHHHHHH
Confidence 999999999999999999999999999999999984 4412 34566666777888898877554
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.29 E-value=1e-09 Score=99.34 Aligned_cols=203 Identities=8% Similarity=-0.025 Sum_probs=154.9
Q ss_pred cCCCC-HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHH
Q 015472 52 DFPVS-SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEY 130 (406)
Q Consensus 52 ~~P~~-~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~ 130 (406)
.+|.+ +.+|...+..+...+ ..+.|..+|++++...|....+|..++..+ ...+++++|..+|++++...+.....+
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~ 108 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRG-NTEQAKVPLRKALEIDPSSADAHAALAVVF-QTEMEPKLADEEYRKALASDSRNARVL 108 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTT-CTGGGHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCChHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHCcCcHHHH
Confidence 45555 788888887776544 678899999999999999999999988744 458999999999999999766544433
Q ss_pred HHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 015472 131 LDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLL 210 (406)
Q Consensus 131 ~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al 210 (406)
..+...+. . .+++..+...|++++.. ...+....+|..++.+....| +++.|..+|++++
T Consensus 109 ~~la~~~~-----~---------~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~ 168 (252)
T 2ho1_A 109 NNYGGFLY-----E---------QKRYEEAYQRLLEASQD-----TLYPERSRVFENLGLVSLQMK-KPAQAKEYFEKSL 168 (252)
T ss_dssp HHHHHHHH-----H---------TTCHHHHHHHHHHHTTC-----TTCTTHHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHH-----H---------HhHHHHHHHHHHHHHhC-----ccCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Confidence 33222111 1 13455666677776550 023455678888999999999 9999999999999
Q ss_pred HhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHh
Q 015472 211 KISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (406)
Q Consensus 211 ~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~a~~k 279 (406)
...|.++.+|..++.+....|+++.|..+|++++.. .| .....+.....+....|+.+.....+++
T Consensus 169 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 234 (252)
T 2ho1_A 169 RLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQG-GG--QNARSLLLGIRLAKVFEDRDTAASYGLQ 234 (252)
T ss_dssp HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-SC--CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-Cc--CcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999999999999999999999999999974 33 2456677777777788998776554443
No 51
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.27 E-value=3.7e-09 Score=105.01 Aligned_cols=235 Identities=11% Similarity=0.023 Sum_probs=156.2
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHH---HhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---cchhhhH
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYE---QSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKT---LKVGNVV 77 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E---~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~---~~~~e~a 77 (406)
|...|+.+|...| .+...|..++... ...|..+.+...|++|+..+|.++.+|..++..+... .+..+.+
T Consensus 157 A~~~~~kal~~~p----~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a 232 (472)
T 4g1t_A 157 AKVCFEKALEKKP----KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEG 232 (472)
T ss_dssp HHHHHHHHHHHST----TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHH
T ss_pred HHHHHHHHHHhCC----CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHH
Confidence 5667788887776 3455666655443 3356777888899999999999988887776544322 1245678
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhH
Q 015472 78 RDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDY 157 (406)
Q Consensus 78 ~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~ 157 (406)
..+|++|+...|....+|...+..+ ...+++++|...|.+|+...|.....+..+...+............ ......
T Consensus 233 ~~~~~~al~~~~~~~~~~~~lg~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~--~~~~~~ 309 (472)
T 4g1t_A 233 EKLVEEALEKAPGVTDVLRSAAKFY-RRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRE--NGMYGK 309 (472)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC--------CH
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHH-HHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHH--HHHHHH
Confidence 9999999999999888988888754 4588899999999999988776555554444322111100000000 000111
Q ss_pred HHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchH---HHHHHHHHHH-HHcccH
Q 015472 158 SLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAML---EAWQSYISME-IELDHI 233 (406)
Q Consensus 158 ~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~---~lW~~y~~~E-~~~g~~ 233 (406)
......++.|+..+.......+.....+...+.+....| ++++|..+|++++...++.. .++..|..+. ...|++
T Consensus 310 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (472)
T 4g1t_A 310 RKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALAD-QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCE 388 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTT-CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhc-cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCH
Confidence 123344455555444433334444556778888888999 99999999999999876543 3667777764 467999
Q ss_pred HHHHHHHHHHHhc
Q 015472 234 NEARSIYKRCYSK 246 (406)
Q Consensus 234 ~~ar~l~~ral~~ 246 (406)
+.|...|.+|+..
T Consensus 389 ~~Ai~~y~kal~i 401 (472)
T 4g1t_A 389 DKAIHHFIEGVKI 401 (472)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999974
No 52
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.23 E-value=1.2e-09 Score=93.10 Aligned_cols=167 Identities=11% Similarity=-0.017 Sum_probs=131.0
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015472 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (406)
Q Consensus 22 ~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~ 101 (406)
....|...+......|+++.+...|++++...|.+..+|...+..+... +..+.+...|++++...|....+|..++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKT-GAVDRGTELLERSLADAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4556777777777889999999999999999999999988888776654 367889999999999999888888887764
Q ss_pred HHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchH
Q 015472 102 LERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGL 181 (406)
Q Consensus 102 lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~ 181 (406)
+ ...+++++|..+|++++...+. .
T Consensus 86 ~-~~~~~~~~A~~~~~~~~~~~~~-------------------------------------------------------~ 109 (186)
T 3as5_A 86 Y-VQVQKYDLAVPLLIKVAEANPI-------------------------------------------------------N 109 (186)
T ss_dssp H-HHHTCHHHHHHHHHHHHHHCTT-------------------------------------------------------C
T ss_pred H-HHhcCHHHHHHHHHHHHhcCcH-------------------------------------------------------h
Confidence 4 3467777777777776653322 1
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 182 ~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
..+|..++.+....| +++.|..+|++++...|+++.+|...+......|+++.|..+|++++..
T Consensus 110 ~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 110 FNVRFRLGVALDNLG-RFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 234445555566677 8999999999999998888888888888888889999999999998874
No 53
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.23 E-value=2.5e-09 Score=95.84 Aligned_cols=197 Identities=11% Similarity=-0.008 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015472 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFP-VSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (406)
Q Consensus 23 ~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P-~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~ 101 (406)
...|...+......|+++.|...|++++..+| .+..+|...+...... +..+.|...|++|+...|....+|..++..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNI-KKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh-hcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 46788888888889999999999999999999 8999998877666654 478899999999999999999999999975
Q ss_pred HHHccCCHHHHHHHHHHHHhCccccHHHHH---HHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCC
Q 015472 102 LERSRASEEEISTVFEKSLLCAFSTFEEYL---DLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNT 178 (406)
Q Consensus 102 lE~~~~~~e~ar~if~~al~~~~~~~~~~~---~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~ 178 (406)
+ ...+++++|...|++++...|....... ..+... +.+.. ..++++.+...|++++.. .
T Consensus 86 ~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-g~~~~---------~~~~~~~A~~~~~~al~~-------~ 147 (228)
T 4i17_A 86 Y-RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKE-GQKFQ---------QAGNIEKAEENYKHATDV-------T 147 (228)
T ss_dssp H-HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-HHHHH---------HTTCHHHHHHHHHHHTTS-------S
T ss_pred H-HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH-hHHHH---------HhccHHHHHHHHHHHHhc-------C
Confidence 5 4589999999999999997665332211 111110 00000 013334444445444432 4
Q ss_pred ch--HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 179 DG--LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 179 ~~--~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
|. ....|...+.+....| ..+++.+....+.....+.. ......+.++.|...|++++..
T Consensus 148 p~~~~~~~~~~l~~~~~~~~------~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 148 SKKWKTDALYSLGVLFYNNG------ADVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp CHHHHHHHHHHHHHHHHHHH------HHHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHH------HHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhc
Confidence 55 4566666666654443 44556665554443332221 2233456678888999998874
No 54
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.22 E-value=1.9e-09 Score=100.18 Aligned_cols=210 Identities=11% Similarity=0.075 Sum_probs=154.0
Q ss_pred ChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhC--
Q 015472 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITD--------FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC-- 88 (406)
Q Consensus 19 ~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~--------~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~-- 88 (406)
+|.....|...+......|+++.+..+|++++.. .|....+|...+..+... +..+.|...|++|+...
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ-NKYKDAANLLNDALAIREK 101 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHH
Confidence 4677888999999899999999999999999984 667778888888777654 46889999999999863
Q ss_pred ------CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCc-----cc---cHHHHHHHHHHHHHHHHHHHhccccchhh
Q 015472 89 ------PWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA-----FS---TFEEYLDLFLTRIDGLRRRILFSGEVEGV 154 (406)
Q Consensus 89 ------P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~-----~~---~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~ 154 (406)
|....+|..++..+ ...+++++|..+|++++... .. ....+..+...+ . ..
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~-----~---------~~ 166 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLY-GKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLC-----Q---------NQ 166 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-----H---------TT
T ss_pred HhCCCChHHHHHHHHHHHHH-HHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH-----H---------Hc
Confidence 44456777777644 46899999999999999752 11 111111111110 0 11
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcC-CchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--------------------
Q 015472 155 LDYSLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS-------------------- 213 (406)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~-------------------- 213 (406)
+++..+...|++++......... .+....++..++.+....| +++.|..+|++++...
T Consensus 167 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 245 (311)
T 3nf1_A 167 GKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQG-KFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAE 245 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHC------CCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 45667888888888865443222 3445678888999999999 9999999999999852
Q ss_pred -----------------------------cchHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 015472 214 -----------------------------GAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (406)
Q Consensus 214 -----------------------------~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~ 245 (406)
|..+.+|...+.+....|+++.|..+|++++.
T Consensus 246 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 246 EREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44556777777777777888888888887776
No 55
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.20 E-value=3.2e-09 Score=99.06 Aligned_cols=123 Identities=11% Similarity=0.043 Sum_probs=80.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccch------HHHHHHHHHHHH
Q 015472 155 LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM------LEAWQSYISMEI 228 (406)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~------~~lW~~y~~~E~ 228 (406)
+++..+...|++++...... ........++...+.+....| +++.|..+|++++...+.. ..++...+....
T Consensus 197 ~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 274 (338)
T 3ro2_A 197 GNFRDAVIAHEQRLLIAKEF-GDKAAERRAYSNLGNAYIFLG-EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT 274 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 34455666777776654321 111223457777888888888 8999999999999875543 567788888888
Q ss_pred HcccHHHHHHHHHHHHhcccCC-CChH---HHHHHHHHHHHHhCCHHHHHHHHHhh
Q 015472 229 ELDHINEARSIYKRCYSKRFTG-TGSE---DICHAWLRFEREYGTLEDFDHSVQKV 280 (406)
Q Consensus 229 ~~g~~~~ar~l~~ral~~~~~~-~~~~---~i~~~~i~fE~~~G~~e~~~~a~~k~ 280 (406)
..|+++.|..+|++++.. .+. ..+. .++..........|+.+.......+.
T Consensus 275 ~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 275 LLQDYEKAIDYHLKHLAI-AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HTTCHHHHHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH-HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 999999999999999874 221 1122 23444444556667776655444444
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.20 E-value=7.8e-09 Score=100.59 Aligned_cols=255 Identities=12% Similarity=-0.049 Sum_probs=162.4
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHhcchhhhHHHHHHHHHHhC------CC
Q 015472 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS----DLWLDYTQYLDKTLKVGNVVRDVYSRATKNC------PW 90 (406)
Q Consensus 21 ~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~----~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~------P~ 90 (406)
.....+...+......|+++.+...|++++...|.++ .+|...+..+...+ ..+.+...|++|+... |.
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLG-DYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHccCchH
Confidence 3444555666667778999999999999999999987 46777777666544 6789999999999863 44
Q ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCcc------ccHHHHHHHHHHHHH--H-HHHHHhccccchhhhhHHHHH
Q 015472 91 VGELWVRSLLSLERSRASEEEISTVFEKSLLCAF------STFEEYLDLFLTRID--G-LRRRILFSGEVEGVLDYSLIR 161 (406)
Q Consensus 91 ~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~------~~~~~~~~l~~~~~~--~-l~Rr~~~~~~~e~~~~~~~~r 161 (406)
...+|..++..+ ...+++++|...|++++.... .....+..+...+.. . .+.........+....+..+.
T Consensus 125 ~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~ 203 (411)
T 4a1s_A 125 EAKSSGNLGNTL-KVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAV 203 (411)
T ss_dssp HHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHH
Confidence 556777777644 458999999999999998522 111222222111100 0 000000000000111244555
Q ss_pred HHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchH------HHHHHHHHHHHHcccHHH
Q 015472 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAML------EAWQSYISMEIELDHINE 235 (406)
Q Consensus 162 ~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~------~lW~~y~~~E~~~g~~~~ 235 (406)
..|++++...... ...+....++...+.+....| +++.|...|++++...+... .+|...+.+....|+++.
T Consensus 204 ~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 281 (411)
T 4a1s_A 204 EFYQENLKLMRDL-GDRGAQGRACGNLGNTYYLLG-DFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED 281 (411)
T ss_dssp HHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHH
Confidence 6666666544221 112334457777888888888 89999999999998865432 377888888888999999
Q ss_pred HHHHHHHHHhcccCC-CCh---HHHHHHHHHHHHHhCCHHHHHHHHHhh
Q 015472 236 ARSIYKRCYSKRFTG-TGS---EDICHAWLRFEREYGTLEDFDHSVQKV 280 (406)
Q Consensus 236 ar~l~~ral~~~~~~-~~~---~~i~~~~i~fE~~~G~~e~~~~a~~k~ 280 (406)
|..+|++++.. .+. ... ..++..........|+.+.....+++.
T Consensus 282 A~~~~~~al~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (411)
T 4a1s_A 282 AAEHYKRTLAL-AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH 329 (411)
T ss_dssp HHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999874 221 111 234444444556678876654444443
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.18 E-value=1.9e-09 Score=98.48 Aligned_cols=207 Identities=11% Similarity=0.056 Sum_probs=146.7
Q ss_pred hhhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHH
Q 015472 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (406)
Q Consensus 3 ~~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vye 82 (406)
.+...|+.+|...|. ....|...+......|+++.+...|++++..+|.++.+|...+..+... +..+.|..+|+
T Consensus 61 ~A~~~~~~al~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~ 135 (275)
T 1xnf_A 61 LARNDFSQALAIRPD----MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG-GRDKLAQDDLL 135 (275)
T ss_dssp HHHHHHHHHHHHCCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC----cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHh-ccHHHHHHHHH
Confidence 356778888888762 5678999999899999999999999999999999999999999887764 46889999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHH--HHHHHHHHHHHHHHHhccccchhhhhHHHH
Q 015472 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEY--LDLFLTRIDGLRRRILFSGEVEGVLDYSLI 160 (406)
Q Consensus 83 rA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~--~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~ 160 (406)
+++...|.....+..+... ...+++++|..+|.+++...++....+ ..++ ... .+...+
T Consensus 136 ~a~~~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~------~~~~~a 196 (275)
T 1xnf_A 136 AFYQDDPNDPFRSLWLYLA--EQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFY-----------LGN------ISEQTL 196 (275)
T ss_dssp HHHHHCTTCHHHHHHHHHH--HHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHH-----------TTS------SCHHHH
T ss_pred HHHHhCCCChHHHHHHHHH--HHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHH-----------HHh------cCHHHH
Confidence 9999999887544443332 235889999999999998654321111 1111 010 122334
Q ss_pred HHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHH
Q 015472 161 RETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIY 240 (406)
Q Consensus 161 r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~ 240 (406)
...|.+++..... ..+....+|...+.+....| +++.|...|++++...|++. ..+.......|+++.|...|
T Consensus 197 ~~~~~~~~~~~~~---~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 197 MERLKADATDNTS---LAEHLSETNFYLGKYYLSLG-DLDSATALFKLAVANNVHNF---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHCCSHHH---HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCTTC---HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHhccccc---ccccccHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCchhH---HHHHHHHHHHHHHHhhHHHH
Confidence 4455555432211 01223578888999999999 99999999999999998663 34454556667777777665
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.18 E-value=4e-09 Score=102.68 Aligned_cols=262 Identities=11% Similarity=-0.052 Sum_probs=177.9
Q ss_pred hhhHHHHHHHhcCCCCChh-hHHHHHHHHHHHHhcCChhHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhcchhh
Q 015472 3 NARAHLEEQISRQDLSDSE-KFQQYMIYLKYEQSSGDPGRVQLLYERAITD------FPVSSDLWLDYTQYLDKTLKVGN 75 (406)
Q Consensus 3 ~~R~~yE~~L~~~~~~~~~-~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~------~P~~~~lW~~Y~~~l~~~~~~~e 75 (406)
.+...|+.+|...+ .++. ...+|...+......|+++.+...|++++.. .|....+|...+..+...+ ..+
T Consensus 66 ~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~ 143 (411)
T 4a1s_A 66 AGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG-RFD 143 (411)
T ss_dssp HHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHH
T ss_pred HHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC-CHH
Confidence 36678999998876 3332 2357878888888899999999999999987 4667788888887776544 678
Q ss_pred hHHHHHHHHHHhC------CCCHHHHHHHHHHHHHccCC-----------------HHHHHHHHHHHHhCccc--cHHHH
Q 015472 76 VVRDVYSRATKNC------PWVGELWVRSLLSLERSRAS-----------------EEEISTVFEKSLLCAFS--TFEEY 130 (406)
Q Consensus 76 ~a~~vyerA~~~~------P~~~~lW~~y~~~lE~~~~~-----------------~e~ar~if~~al~~~~~--~~~~~ 130 (406)
.|...|++|+... |....+|..++..+ ...++ +++|...|.+++..... .....
T Consensus 144 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~ 222 (411)
T 4a1s_A 144 EAAICCERHLTLARQLGDRLSEGRALYNLGNVY-HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQ 222 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999874 33445777776643 34677 88888888888774221 11111
Q ss_pred HHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 015472 131 LDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLL 210 (406)
Q Consensus 131 ~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al 210 (406)
...+... ..+.. ..+++..+...|++++...... ........++...+.+....| +++.|...|++++
T Consensus 223 ~~~~~~l-a~~~~---------~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al 290 (411)
T 4a1s_A 223 GRACGNL-GNTYY---------LLGDFQAAIEHHQERLRIAREF-GDRAAERRANSNLGNSHIFLG-QFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHH-HHHHH---------HTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHH---------HcCChHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHCc-CHHHHHHHHHHHH
Confidence 1111110 11110 1145667888888888765332 111223457778888888899 9999999999999
Q ss_pred Hhccch------HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCC-CChH---HHHHHHHHHHHHhCCHHHHHHHHHhh
Q 015472 211 KISGAM------LEAWQSYISMEIELDHINEARSIYKRCYSKRFTG-TGSE---DICHAWLRFEREYGTLEDFDHSVQKV 280 (406)
Q Consensus 211 ~~~~~~------~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~-~~~~---~i~~~~i~fE~~~G~~e~~~~a~~k~ 280 (406)
...+.. ..+|...+.+....|+++.|..+|++++.. .+. .... .++......-...|+.+......++.
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI-AQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 986532 578888999999999999999999999874 221 1122 24444555566678876654444444
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.17 E-value=5.3e-09 Score=100.93 Aligned_cols=252 Identities=10% Similarity=-0.037 Sum_probs=139.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHhcchhhhHHHHHHHHHHhC------CCCHHH
Q 015472 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS----DLWLDYTQYLDKTLKVGNVVRDVYSRATKNC------PWVGEL 94 (406)
Q Consensus 25 ~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~----~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~------P~~~~l 94 (406)
.|..-+......|+++.+...|++++...|.++ .+|...+...... +..+.+...|++|+... |....+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYL-HDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 444455555566666666666666666666653 3455555444432 34566666666665542 122345
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCccc--c----HHHHHHH---HHHHHH--------------------HHH---
Q 015472 95 WVRSLLSLERSRASEEEISTVFEKSLLCAFS--T----FEEYLDL---FLTRID--------------------GLR--- 142 (406)
Q Consensus 95 W~~y~~~lE~~~~~~e~ar~if~~al~~~~~--~----~~~~~~l---~~~~~~--------------------~l~--- 142 (406)
|...+..+ ...+++++|...|++++...+. . ...+..+ +....+ +-.
T Consensus 90 ~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 90 SGNLGNTL-KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 55555433 3356666666666666653221 0 1111110 000000 000
Q ss_pred --HHHhc----ccc--------------chhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHH
Q 015472 143 --RRILF----SGE--------------VEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSA 202 (406)
Q Consensus 143 --Rr~~~----~~~--------------~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~A 202 (406)
.+.+. ... .-..+++..+...|++++...... ........++...+.+....| +++.|
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g-~~~~A 246 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF-GDKAAERRAYSNLGNAYIFLG-EFETA 246 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT-CHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHcC-ChHHH
Confidence 00000 000 001234556667777777654331 111223457778888888899 99999
Q ss_pred HHHHHHHHHhccch------HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChH---HHHHHHHHHHHHhCCHHHH
Q 015472 203 RGVWERLLKISGAM------LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSE---DICHAWLRFEREYGTLEDF 273 (406)
Q Consensus 203 r~ife~al~~~~~~------~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~---~i~~~~i~fE~~~G~~e~~ 273 (406)
...|++++...+.. ..++...+......|+++.|..+|++++...-....+. .++......-...|+.+..
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999886543 56888888899999999999999999987421111122 2344444455566887665
Q ss_pred HHHHHhh
Q 015472 274 DHSVQKV 280 (406)
Q Consensus 274 ~~a~~k~ 280 (406)
....++.
T Consensus 327 ~~~~~~a 333 (406)
T 3sf4_A 327 MHFAEKH 333 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.15 E-value=3.1e-09 Score=91.78 Aligned_cols=156 Identities=11% Similarity=0.021 Sum_probs=126.9
Q ss_pred hhhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHH
Q 015472 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (406)
Q Consensus 3 ~~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vye 82 (406)
.|...|+.+|...| .+...|...+......|+++.+...|++++...|.+...|...+......+ ..+.+...+.
T Consensus 23 ~A~~~~~~al~~~p----~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~ 97 (184)
T 3vtx_A 23 GAIRAYKKVLKADP----NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMID-EKQAAIDALQ 97 (184)
T ss_dssp HHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcC-CHHHHHHHHH
Confidence 35678999998887 367789999999999999999999999999999999999999998777644 6788999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHH
Q 015472 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRE 162 (406)
Q Consensus 83 rA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~ 162 (406)
+|+...|....+|..++..+. ..+++++|...|++++...|.
T Consensus 98 ~a~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~~l~~~p~------------------------------------- 139 (184)
T 3vtx_A 98 RAIALNTVYADAYYKLGLVYD-SMGEHDKAIEAYEKTISIKPG------------------------------------- 139 (184)
T ss_dssp HHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT-------------------------------------
T ss_pred HHHHhCccchHHHHHHHHHHH-HhCCchhHHHHHHHHHHhcch-------------------------------------
Confidence 999999999999999887553 578888888888887765442
Q ss_pred HHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHH
Q 015472 163 TFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAW 220 (406)
Q Consensus 163 ~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW 220 (406)
...+|...+.+....| +++.|...|+++++.+|+++..+
T Consensus 140 ------------------~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~a~~~ 178 (184)
T 3vtx_A 140 ------------------FIRAYQSIGLAYEGKG-LRDEAVKYFKKALEKEEKKAKYE 178 (184)
T ss_dssp ------------------CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTHHHHHHC
T ss_pred ------------------hhhHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCccCHHHH
Confidence 2234555566666778 88889999999998888776543
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.11 E-value=6e-08 Score=90.29 Aligned_cols=252 Identities=10% Similarity=-0.056 Sum_probs=159.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHhcchhhhHHHHHHHHHHhC------CCCHH
Q 015472 24 QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS----DLWLDYTQYLDKTLKVGNVVRDVYSRATKNC------PWVGE 93 (406)
Q Consensus 24 ~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~----~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~------P~~~~ 93 (406)
..|...+......|+++.+..+|++++...|.++ .+|...+...... +..+.+...|++|+... |....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYL-HDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 3455556667778999999999999999999985 5666777666544 46788999999998763 23346
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCccc--cHHHHHHHHHHHHHHHHHHHhc----cc-------cchhhhhHHHH
Q 015472 94 LWVRSLLSLERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILF----SG-------EVEGVLDYSLI 160 (406)
Q Consensus 94 lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~--~~~~~~~l~~~~~~~l~Rr~~~----~~-------~~e~~~~~~~~ 160 (406)
+|...+..+ ...+++++|...|++++...+. ........+... ..+...... .. ..+....+..+
T Consensus 85 ~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 85 ASGNLGNTL-KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNL-GNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHH-HHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHH-HHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 777777644 4589999999999999985332 111111111111 111111100 00 00001113455
Q ss_pred HHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccch------HHHHHHHHHHHHHcccHH
Q 015472 161 RETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM------LEAWQSYISMEIELDHIN 234 (406)
Q Consensus 161 r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~------~~lW~~y~~~E~~~g~~~ 234 (406)
...|++++...... ...+....++...+.+....| +++.|...|++++...+.. ..+|...+......|+++
T Consensus 163 ~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 240 (338)
T 3ro2_A 163 VDLYEENLSLVTAL-GDRAAQGRAFGNLGNTHYLLG-NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 240 (338)
T ss_dssp HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH
Confidence 55666665543221 112233457778888888899 9999999999999885432 247888888889999999
Q ss_pred HHHHHHHHHHhcccCCCChH---HHHHHHHHHHHHhCCHHHHHHHHHhh
Q 015472 235 EARSIYKRCYSKRFTGTGSE---DICHAWLRFEREYGTLEDFDHSVQKV 280 (406)
Q Consensus 235 ~ar~l~~ral~~~~~~~~~~---~i~~~~i~fE~~~G~~e~~~~a~~k~ 280 (406)
.|..+|++++...-....+. .++..........|+.+.....+++.
T Consensus 241 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (338)
T 3ro2_A 241 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999987421112222 23344444566678876654444443
No 62
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.11 E-value=2.2e-08 Score=99.34 Aligned_cols=217 Identities=14% Similarity=0.069 Sum_probs=146.6
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--cchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHH---ccCC
Q 015472 34 QSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKT--LKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER---SRAS 108 (406)
Q Consensus 34 ~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~--~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~---~~~~ 108 (406)
...++++.|...|++|+..+|.++++|..++...... .+..+.+...|++|+...|....+|..++..+.. ..+.
T Consensus 149 ~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 228 (472)
T 4g1t_A 149 CGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEE 228 (472)
T ss_dssp HCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC-----
T ss_pred HccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhH
Confidence 3346789999999999999999999999988654332 2345679999999999999998888777653322 2466
Q ss_pred HHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHH
Q 015472 109 EEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYW 188 (406)
Q Consensus 109 ~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~ 188 (406)
++++..+|++++...|.....+..+...+. . .+++..+...|+++++.. |....++...
T Consensus 229 ~~~a~~~~~~al~~~~~~~~~~~~lg~~~~-----~---------~~~~~~A~~~~~~al~~~-------p~~~~~~~~l 287 (472)
T 4g1t_A 229 EGEGEKLVEEALEKAPGVTDVLRSAAKFYR-----R---------KDEPDKAIELLKKALEYI-------PNNAYLHCQI 287 (472)
T ss_dssp -CHHHHHHHHHHHHCSSCHHHHHHHHHHHH-----H---------TTCHHHHHHHHHHHHHHS-------TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHH-----H---------cCchHHHHHHHHHHHHhC-------CChHHHHHHH
Confidence 789999999999987765554444332221 1 134456667777776642 2233333333
Q ss_pred HHHHH-------------------HcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccC
Q 015472 189 AHLEQ-------------------SMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFT 249 (406)
Q Consensus 189 a~~e~-------------------~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~ 249 (406)
+.... ... ..+.|...|++++...|.....|...+......|+++.|..+|++++....+
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLE-LIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHH-HHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh-hHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 32221 122 4678889999999999999999999999999999999999999999985322
Q ss_pred CCChHHHHHHHHHH-HHHhCCHHH
Q 015472 250 GTGSEDICHAWLRF-EREYGTLED 272 (406)
Q Consensus 250 ~~~~~~i~~~~i~f-E~~~G~~e~ 272 (406)
......++..+..+ +...|+.+.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~ 390 (472)
T 4g1t_A 367 PVAKQLLHLRYGNFQLYQMKCEDK 390 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHH
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHH
Confidence 11112344555544 334566543
No 63
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.08 E-value=3.8e-08 Score=90.11 Aligned_cols=188 Identities=12% Similarity=-0.008 Sum_probs=137.1
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCC---HHH
Q 015472 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS---SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV---GEL 94 (406)
Q Consensus 21 ~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~---~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~---~~l 94 (406)
...+.+...+......|+++.|...|++++..+|.+ +..|...+..+... +..+.|...|++++...|.+ ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQN-KEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 346677777777788999999999999999999999 88888888776654 47889999999999998854 456
Q ss_pred HHHHHHHHHHc--------cCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHH
Q 015472 95 WVRSLLSLERS--------RASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQR 166 (406)
Q Consensus 95 W~~y~~~lE~~--------~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~ 166 (406)
|...+..+ .. .+++++|...|++++...|........+ .++. .++..
T Consensus 92 ~~~lg~~~-~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~--~~~~-------------------~~~~~--- 146 (261)
T 3qky_A 92 EYERAMCY-YKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDAT--QKIR-------------------ELRAK--- 146 (261)
T ss_dssp HHHHHHHH-HHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHH--HHHH-------------------HHHHH---
T ss_pred HHHHHHHH-HHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHH--HHHH-------------------HHHHH---
Confidence 66666533 23 6789999999999998655421110000 0000 00000
Q ss_pred HHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc---hHHHHHHHHHHHHHc----------ccH
Q 015472 167 ASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA---MLEAWQSYISMEIEL----------DHI 233 (406)
Q Consensus 167 a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~---~~~lW~~y~~~E~~~----------g~~ 233 (406)
....+...+.+....| +++.|...|++++...|+ .+..|...+...... |++
T Consensus 147 --------------~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~ 211 (261)
T 3qky_A 147 --------------LARKQYEAARLYERRE-LYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERY 211 (261)
T ss_dssp --------------HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHH
T ss_pred --------------HHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchH
Confidence 1123455677777888 999999999999999887 556777777666655 899
Q ss_pred HHHHHHHHHHHhcccCC
Q 015472 234 NEARSIYKRCYSKRFTG 250 (406)
Q Consensus 234 ~~ar~l~~ral~~~~~~ 250 (406)
+.|..+|++++. .+|.
T Consensus 212 ~~A~~~~~~~~~-~~p~ 227 (261)
T 3qky_A 212 RRAVELYERLLQ-IFPD 227 (261)
T ss_dssp HHHHHHHHHHHH-HCTT
T ss_pred HHHHHHHHHHHH-HCCC
Confidence 999999999998 4664
No 64
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.07 E-value=1e-08 Score=93.46 Aligned_cols=194 Identities=11% Similarity=0.060 Sum_probs=136.5
Q ss_pred hcCChhHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhC--------CCCHHHHHHH
Q 015472 35 SSGDPGRVQLLYERAITD--------FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC--------PWVGELWVRS 98 (406)
Q Consensus 35 ~~g~~~~~~~lyEral~~--------~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~--------P~~~~lW~~y 98 (406)
..|+++.|...|++|+.. .|....+|...+..+... +..+.|...|++|+... |....+|..+
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ-NKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 467888888999998874 356677888888777654 46889999999999764 4455678887
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCc--------cccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHH
Q 015472 99 LLSLERSRASEEEISTVFEKSLLCA--------FSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDY 170 (406)
Q Consensus 99 ~~~lE~~~~~~e~ar~if~~al~~~--------~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~ 170 (406)
+..+ ...+++++|..+|.+++... +.....+..+...+ . ..+++..+...|++++..
T Consensus 92 ~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-----~---------~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 92 AVLY-GKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLC-----Q---------NQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp HHHH-HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-----H---------TTTCHHHHHHHHHHHHHH
T ss_pred HHHH-HHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH-----H---------HcCCHHHHHHHHHHHHHH
Confidence 7644 46899999999999999852 21222222222111 0 124566788888888887
Q ss_pred HhhhhcC-CchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc------------------------------------
Q 015472 171 LSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS------------------------------------ 213 (406)
Q Consensus 171 l~~~~~~-~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~------------------------------------ 213 (406)
....... .+....++..++.+....| +++.|..+|++++...
T Consensus 157 ~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (283)
T 3edt_B 157 YATRLGPDDPNVAKTKNNLASCYLKQG-KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYG 235 (283)
T ss_dssp HHHHSCTTCHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-----
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHH
Confidence 5443322 3445678888999999999 9999999999999862
Q ss_pred -------------cchHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 015472 214 -------------GAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (406)
Q Consensus 214 -------------~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~ 245 (406)
|....+|...+.+....|+++.|..+|++++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 236 EYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23344666666666667777777777777764
No 65
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.06 E-value=3.6e-08 Score=95.06 Aligned_cols=219 Identities=11% Similarity=-0.036 Sum_probs=132.9
Q ss_pred CCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCc------c
Q 015472 55 VSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVG----ELWVRSLLSLERSRASEEEISTVFEKSLLCA------F 124 (406)
Q Consensus 55 ~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~----~lW~~y~~~lE~~~~~~e~ar~if~~al~~~------~ 124 (406)
.....|...+..+... +..+.|...|++|+...|... .+|..++..+ ...++++.|...|++++... +
T Consensus 7 ~~~~~l~~~g~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 7 ASCLELALEGERLCKS-GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAY-FYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 4555666667666654 478899999999999998864 5677777644 45899999999999998742 1
Q ss_pred ccHHHHHHHHHHHH---------HHHHHHHhc--c--cc--------------chhhhh--------------------H
Q 015472 125 STFEEYLDLFLTRI---------DGLRRRILF--S--GE--------------VEGVLD--------------------Y 157 (406)
Q Consensus 125 ~~~~~~~~l~~~~~---------~~l~Rr~~~--~--~~--------------~e~~~~--------------------~ 157 (406)
.....+..+...+. ..+ .+++. + .. ....++ +
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~-~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCC-QRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 11222221111100 000 00000 0 00 001123 3
Q ss_pred HHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccch------HHHHHHHHHHHHHcc
Q 015472 158 SLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM------LEAWQSYISMEIELD 231 (406)
Q Consensus 158 ~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~------~~lW~~y~~~E~~~g 231 (406)
..+...|.+++...... ...+....++...+.+....| +++.|...|++++...+.. ..+|...+......|
T Consensus 164 ~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 241 (406)
T 3sf4_A 164 QAAVDFYEENLSLVTAL-GDRAAQGRAFGNLGNTHYLLG-NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 241 (406)
T ss_dssp HHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHT-BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 34444445544433221 112334567788888889999 9999999999999885432 237888888888999
Q ss_pred cHHHHHHHHHHHHhcccCC-CChH---HHHHHHHHHHHHhCCHHHHHHHHHh
Q 015472 232 HINEARSIYKRCYSKRFTG-TGSE---DICHAWLRFEREYGTLEDFDHSVQK 279 (406)
Q Consensus 232 ~~~~ar~l~~ral~~~~~~-~~~~---~i~~~~i~fE~~~G~~e~~~~a~~k 279 (406)
+++.|..+|++++.. .+. ..+. .++..........|+.+.......+
T Consensus 242 ~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 292 (406)
T 3sf4_A 242 EFETASEYYKKTLLL-ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292 (406)
T ss_dssp CHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHH-HHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 999999999999874 221 2222 2333334445566877664443333
No 66
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.05 E-value=4.5e-08 Score=87.56 Aligned_cols=190 Identities=7% Similarity=-0.035 Sum_probs=135.2
Q ss_pred hhhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHH
Q 015472 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (406)
Q Consensus 3 ~~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vye 82 (406)
.+...|+.+|...|.. +...|...+......|+++.+...|++++..+|.++.+|..++..+...+ ..+.|...|+
T Consensus 25 ~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~ 100 (228)
T 4i17_A 25 VAFEKYSEYLKLTNNQ---DSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMK-NNQEYIATLT 100 (228)
T ss_dssp HHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCC---CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcc-cHHHHHHHHH
Confidence 3567788888887622 34566667777788999999999999999999999999999998877654 7889999999
Q ss_pred HHHHhCCCCH-------HHHHHHHHHHHHccCCHHHHHHHHHHHHhCccc--cHHHHHHHHHHHHHHHHHHHhccccchh
Q 015472 83 RATKNCPWVG-------ELWVRSLLSLERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEG 153 (406)
Q Consensus 83 rA~~~~P~~~-------~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~--~~~~~~~l~~~~~~~l~Rr~~~~~~~e~ 153 (406)
+|+...|.+. .+|...+..+ ...+++++|...|++++...|. ....+..+...+..
T Consensus 101 ~al~~~p~~~~~~~~~~~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~-------------- 165 (228)
T 4i17_A 101 EGIKAVPGNATIEKLYAIYYLKEGQKF-QQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN-------------- 165 (228)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHhHHH-HHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH--------------
Confidence 9999999988 4577766633 4579999999999999998776 44444443322210
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 015472 154 VLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISM 226 (406)
Q Consensus 154 ~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~ 226 (406)
.....++++.... +... ...........+ .+++|...|++++...|++..+.......
T Consensus 166 -----~~~~~~~~a~~~~-------~~~~--~~~~~~~~~~~~-~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 166 -----NGADVLRKATPLA-------SSNK--EKYASEKAKADA-AFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp -----HHHHHHHHHGGGT-------TTCH--HHHHHHHHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred -----HHHHHHHHHHhcc-------cCCH--HHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 1122233333321 1111 111222233445 78999999999999999998877665544
No 67
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.03 E-value=2.5e-09 Score=112.69 Aligned_cols=174 Identities=14% Similarity=0.004 Sum_probs=132.9
Q ss_pred HhcCChhHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015472 34 QSSGDPGRVQLLYERAI--------TDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERS 105 (406)
Q Consensus 34 ~~~g~~~~~~~lyEral--------~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~ 105 (406)
...|+++.|...|++++ ..+|.+..+|...+..+...+ ..+.|...|++|+...|.+..+|..++..+ ..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~lg~~~-~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLG-DVAKATRKLDDLAERVGWRWRLVWYRAVAE-LL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcC-CHHHHHHHHHHHhccCcchHHHHHHHHHHH-HH
Confidence 56789999999999999 889999999999988776554 678899999999999999999999988744 45
Q ss_pred cCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHH
Q 015472 106 RASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLY 185 (406)
Q Consensus 106 ~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~ 185 (406)
.+++++|...|++|+...|.....+..+...+. .. ++++. ...|++++.. .|....+|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~-----~~---------g~~~~-~~~~~~al~~-------~P~~~~a~ 537 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAE-----LA---------GNTDE-HKFYQTVWST-------NDGVISAA 537 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH-----HH---------TCCCT-TCHHHHHHHH-------CTTCHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-----Hc---------CChHH-HHHHHHHHHh-------CCchHHHH
Confidence 899999999999999987765444444332211 11 33335 5667777664 34456688
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHccc
Q 015472 186 AYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDH 232 (406)
Q Consensus 186 ~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~ 232 (406)
...+.+...+| +++.|...|++++...|++...|...+......|.
T Consensus 538 ~~lg~~~~~~g-~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 538 FGLARARSAEG-DRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHcC-CHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 88888888888 89999999999999999988888888877655444
No 68
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.03 E-value=2.2e-08 Score=88.98 Aligned_cols=171 Identities=9% Similarity=0.010 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHH----------------HHHHHHHhcchhhhHHHHHHHHHH
Q 015472 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLD----------------YTQYLDKTLKVGNVVRDVYSRATK 86 (406)
Q Consensus 23 ~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~----------------Y~~~l~~~~~~~e~a~~vyerA~~ 86 (406)
.+.+..-+......|+++.+...|++++..+|.++..|.. .+..+... +..+.|...|++|+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKN-RNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
Confidence 4455566666677899999999999999999999999988 77666654 478999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHH
Q 015472 87 NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQR 166 (406)
Q Consensus 87 ~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~ 166 (406)
..|.+..+|..++..+ ...+++++|...|++++...|.....+..+...+...-. .+...+...|..
T Consensus 83 ~~p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~------------~~~~~~~~~~~~ 149 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQ-VCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE------------QEKKKLETDYKK 149 (208)
T ss_dssp HCTTCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH------------HHHHHHHHHHC-
T ss_pred HCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH------------HHHHHHHHHHHH
Confidence 9999999999999855 458999999999999999888766655555433211000 011122223322
Q ss_pred HHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccch
Q 015472 167 ASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM 216 (406)
Q Consensus 167 a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~ 216 (406)
++. .++....|...+......| +++.|...|++++...|+.
T Consensus 150 ~~~--------~~~~~~a~~~~g~~~~~~~-~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 150 LSS--------PTKMQYARYRDGLSKLFTT-RYEKARNSLQKVILRFPST 190 (208)
T ss_dssp --C--------CCHHHHHHHHHHHHHHHHH-THHHHHHHHHHHTTTSCCH
T ss_pred HhC--------CCchhHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCH
Confidence 211 1111112333344445567 8999999999999998874
No 69
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.02 E-value=1.1e-09 Score=94.65 Aligned_cols=78 Identities=15% Similarity=0.100 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccch--HHHHHHHHHHHHHcccHHHHHH
Q 015472 161 RETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM--LEAWQSYISMEIELDHINEARS 238 (406)
Q Consensus 161 r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~--~~lW~~y~~~E~~~g~~~~ar~ 238 (406)
...|++++.. .|.+..++..++.+....| +++.|...|++++...|+. ...|...+......|+.+.|..
T Consensus 94 ~~~~~~al~~-------~P~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 94 LKRLEQELAA-------NPDNFELACELAVQYNQVG-RDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHHHHHHHH-------STTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHh-------CCCCHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 3445555543 3455678888999999999 9999999999999999875 5699999999999999999999
Q ss_pred HHHHHHhc
Q 015472 239 IYKRCYSK 246 (406)
Q Consensus 239 l~~ral~~ 246 (406)
.|.+++..
T Consensus 166 ~y~~al~~ 173 (176)
T 2r5s_A 166 KYRRQLYS 173 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999874
No 70
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.02 E-value=1.9e-07 Score=87.77 Aligned_cols=220 Identities=9% Similarity=0.067 Sum_probs=155.0
Q ss_pred Chhh-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCCHHHH
Q 015472 19 DSEK-FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKN--CPWVGELW 95 (406)
Q Consensus 19 ~~~~-~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~--~P~~~~lW 95 (406)
+|++ .....-++......|+++.|...++.. .|.+......++.++... +..+.+...|++++.. .|.+..+|
T Consensus 29 ~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~la~~~~~~-~~~~~A~~~l~~ll~~~~~P~~~~~~ 104 (291)
T 3mkr_A 29 SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEYLASH-SRRDAIVAELDREMSRSVDVTNTTFL 104 (291)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHHHHHHHCS-TTHHHHHHHHHHHHHSCCCCSCHHHH
T ss_pred CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhHHHHHHHHHHHcCC-CcHHHHHHHHHHHHhcccCCCCHHHH
Confidence 3443 344444556667789999888877652 454556666777777653 3578899999999875 59999999
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhh
Q 015472 96 VRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQM 175 (406)
Q Consensus 96 ~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~ 175 (406)
...+..+. ..|++++|..+|++ +..+..+..+...+. + .++++.+...|++++..- +
T Consensus 105 ~~la~~~~-~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~-----~---------~g~~~~A~~~l~~~~~~~-p-- 161 (291)
T 3mkr_A 105 LMAASIYF-YDQNPDAALRTLHQ-----GDSLECMAMTVQILL-----K---------LDRLDLARKELKKMQDQD-E-- 161 (291)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHTT-----CCSHHHHHHHHHHHH-----H---------TTCHHHHHHHHHHHHHHC-T--
T ss_pred HHHHHHHH-HCCCHHHHHHHHhC-----CCCHHHHHHHHHHHH-----H---------CCCHHHHHHHHHHHHhhC-c--
Confidence 98887554 58999999999988 334443333322111 1 145567778888877652 1
Q ss_pred cCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHH
Q 015472 176 KNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSED 255 (406)
Q Consensus 176 ~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~ 255 (406)
......+...|+.+....| +++.|..+|++++..+|+++.+|...+......|+++.|..+|++++.. -| + ...
T Consensus 162 --~~~~~~l~~a~~~l~~~~~-~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-~p-~-~~~ 235 (291)
T 3mkr_A 162 --DATLTQLATAWVSLAAGGE-KLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK-DS-G-HPE 235 (291)
T ss_dssp --TCHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT-T-CHH
T ss_pred --CcHHHHHHHHHHHHHhCch-HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC-C-CHH
Confidence 1112233344555555556 8999999999999999999999999999999999999999999999984 33 3 355
Q ss_pred HHHHHHHHHHHhCCHH
Q 015472 256 ICHAWLRFEREYGTLE 271 (406)
Q Consensus 256 i~~~~i~fE~~~G~~e 271 (406)
.|...+..-...|...
T Consensus 236 ~l~~l~~~~~~~g~~~ 251 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPP 251 (291)
T ss_dssp HHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHcCCCH
Confidence 6666677666778754
No 71
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.01 E-value=2.1e-07 Score=85.53 Aligned_cols=196 Identities=11% Similarity=-0.023 Sum_probs=146.0
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcchhhhHHHHHHHHHHhCCCCHHHHH
Q 015472 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDK----TLKVGNVVRDVYSRATKNCPWVGELWV 96 (406)
Q Consensus 21 ~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~----~~~~~e~a~~vyerA~~~~P~~~~lW~ 96 (406)
.+...+...+......|+++.+...|++++. |.++..|...+..+.. . ++.+.|...|++|+... ....|.
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~-~~~~~A~~~~~~a~~~~--~~~a~~ 78 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVE-KNLKKAASFYAKACDLN--YSNGCH 78 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcC-CCHHHHHHHHHHHHHCC--CHHHHH
Confidence 4566787888888888999999999999998 7888999998887765 3 46788999999999874 567888
Q ss_pred HHHHHHHHc----cCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHh
Q 015472 97 RSLLSLERS----RASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLS 172 (406)
Q Consensus 97 ~y~~~lE~~----~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~ 172 (406)
.++..+. . .+++++|...|++++..+. ...+..+...+. ... ....+++.+...|+++++.
T Consensus 79 ~lg~~~~-~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~-----~~~-----~~~~~~~~A~~~~~~a~~~-- 143 (273)
T 1ouv_A 79 LLGNLYY-SGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYH-----DGK-----VVTRDFKKAVEYFTKACDL-- 143 (273)
T ss_dssp HHHHHHH-HTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH-----HCS-----SSCCCHHHHHHHHHHHHHT--
T ss_pred HHHHHHh-CCCCcccCHHHHHHHHHHHHHcCC--ccHHHHHHHHHH-----cCC-----CcccCHHHHHHHHHHHHhc--
Confidence 7776443 4 7899999999999998753 223333222111 100 0014556777778777663
Q ss_pred hhhcCCchHHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHH----cccHHHHHHHHHHHH
Q 015472 173 EQMKNTDGLLRLYAYWAHLEQS----MGKDMVSARGVWERLLKISGAMLEAWQSYISMEIE----LDHINEARSIYKRCY 244 (406)
Q Consensus 173 ~~~~~~~~~~~l~~~~a~~e~~----~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~----~g~~~~ar~l~~ral 244 (406)
. ....+..++.+... .+ ++++|...|++++... ++..+...+.+... .++++.|..+|++++
T Consensus 144 -----~--~~~a~~~lg~~~~~~~~~~~-~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~ 213 (273)
T 1ouv_A 144 -----N--DGDGCTILGSLYDAGRGTPK-DLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKAC 213 (273)
T ss_dssp -----T--CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH
T ss_pred -----C--cHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH
Confidence 1 23456677777776 67 9999999999999873 46778888888888 899999999999999
Q ss_pred hc
Q 015472 245 SK 246 (406)
Q Consensus 245 ~~ 246 (406)
..
T Consensus 214 ~~ 215 (273)
T 1ouv_A 214 EL 215 (273)
T ss_dssp HT
T ss_pred hC
Confidence 74
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.99 E-value=1.9e-08 Score=106.54 Aligned_cols=168 Identities=14% Similarity=0.152 Sum_probs=127.0
Q ss_pred cCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHH
Q 015472 52 DFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYL 131 (406)
Q Consensus 52 ~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~ 131 (406)
.+|.+++.|...+..+...+ ..++|...|++|+...|.....|..++..+ ...+++++|...|++|+...|.
T Consensus 4 s~P~~a~al~nLG~~~~~~G-~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l-~~~g~~~eA~~~~~~Al~l~P~------ 75 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQG-NIEEAVRLYRKALEVFPEFAAAHSNLASVL-QQQGKLQEALMHYKEAIRISPT------ 75 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT------
T ss_pred CCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCC------
Confidence 46778888888887776544 567788888888888888888888877644 3467777777777776654432
Q ss_pred HHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 015472 132 DLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLK 211 (406)
Q Consensus 132 ~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~ 211 (406)
....|..++.+...+| +++.|...|++++.
T Consensus 76 -------------------------------------------------~~~a~~nLg~~l~~~g-~~~~A~~~~~kAl~ 105 (723)
T 4gyw_A 76 -------------------------------------------------FADAYSNMGNTLKEMQ-DVQGALQCYTRAIQ 105 (723)
T ss_dssp -------------------------------------------------CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred -------------------------------------------------CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 2335556666677888 99999999999999
Q ss_pred hccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhh
Q 015472 212 ISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (406)
Q Consensus 212 ~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~a~~k~ 280 (406)
.+|+++..|...+......|+++.|...|++|+.. -| .....|......-...|+.+....+.++.
T Consensus 106 l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l-~P--~~~~a~~~L~~~l~~~g~~~~A~~~~~ka 171 (723)
T 4gyw_A 106 INPAFADAHSNLASIHKDSGNIPEAIASYRTALKL-KP--DFPDAYCNLAHCLQIVCDWTDYDERMKKL 171 (723)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CS--CCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC--CChHHHhhhhhHHHhcccHHHHHHHHHHH
Confidence 99999999999999999999999999999999984 23 34566666666666778766655444443
No 73
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.98 E-value=7.8e-08 Score=91.23 Aligned_cols=97 Identities=12% Similarity=0.033 Sum_probs=48.3
Q ss_pred HHHHHHHhcCCh-hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-chhhhHHHHHHHHHHhCCCCHHHHHHHHHHH---
Q 015472 28 IYLKYEQSSGDP-GRVQLLYERAITDFPVSSDLWLDYTQYLDKTL-KVGNVVRDVYSRATKNCPWVGELWVRSLLSL--- 102 (406)
Q Consensus 28 ~Yi~~E~~~g~~-~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~-~~~e~a~~vyerA~~~~P~~~~lW~~y~~~l--- 102 (406)
.|+.-..+.|.. ++|..+++++|..+|.+..+|......+...+ ...+.+...++.++..+|.+..+|......+
T Consensus 37 ~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~ 116 (306)
T 3dra_A 37 GLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQI 116 (306)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHH
Confidence 333333334433 35555555555555555555555555554332 2445555555555555555555555554433
Q ss_pred -HHcc--CCHHHHHHHHHHHHhCcc
Q 015472 103 -ERSR--ASEEEISTVFEKSLLCAF 124 (406)
Q Consensus 103 -E~~~--~~~e~ar~if~~al~~~~ 124 (406)
.... ++.+++..++.+++...|
T Consensus 117 ~~~l~~~~~~~~EL~~~~~~l~~~p 141 (306)
T 3dra_A 117 MELNNNDFDPYREFDILEAMLSSDP 141 (306)
T ss_dssp HHHTTTCCCTHHHHHHHHHHHHHCT
T ss_pred HHhccccCCHHHHHHHHHHHHHhCC
Confidence 2211 344555555555555443
No 74
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.95 E-value=4.4e-07 Score=83.37 Aligned_cols=208 Identities=10% Similarity=-0.082 Sum_probs=152.8
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---cchhhh
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQS----SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKT---LKVGNV 76 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~----~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~---~~~~e~ 76 (406)
+...|+.++... ....|...+..... .|+++.+...|++++... ++..|...+..+..- .++.+.
T Consensus 25 A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~ 96 (273)
T 1ouv_A 25 AKKYFEKACDLK------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNK 96 (273)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHCC------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHH
Confidence 455677777722 24567777777777 899999999999999884 889999988877650 246788
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccch
Q 015472 77 VRDVYSRATKNCPWVGELWVRSLLSLERS----RASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVE 152 (406)
Q Consensus 77 a~~vyerA~~~~P~~~~lW~~y~~~lE~~----~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e 152 (406)
+...|++|+... ....|..++..+. . .+++++|...|++++..++. ..+..+...+. ....
T Consensus 97 A~~~~~~a~~~~--~~~a~~~lg~~~~-~~~~~~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~~~-----~~~~----- 161 (273)
T 1ouv_A 97 ALQYYSKACDLK--YAEGCASLGGIYH-DGKVVTRDFKKAVEYFTKACDLNDG--DGCTILGSLYD-----AGRG----- 161 (273)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHH-----HTSS-----
T ss_pred HHHHHHHHHHcC--CccHHHHHHHHHH-cCCCcccCHHHHHHHHHHHHhcCcH--HHHHHHHHHHH-----cCCC-----
Confidence 999999999863 5678888887554 4 68999999999999997643 22222221111 1000
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 015472 153 GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQS----MGKDMVSARGVWERLLKISGAMLEAWQSYISMEI 228 (406)
Q Consensus 153 ~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~----~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~ 228 (406)
...++..+...|+++++. . ....+..++.+... .+ +++.|...|++++...+ +..+...+.+..
T Consensus 162 ~~~~~~~A~~~~~~a~~~-------~--~~~a~~~lg~~~~~g~~~~~-~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~ 229 (273)
T 1ouv_A 162 TPKDLKKALASYDKACDL-------K--DSPGCFNAGNMYHHGEGATK-NFKEALARYSKACELEN--GGGCFNLGAMQY 229 (273)
T ss_dssp SCCCHHHHHHHHHHHHHT-------T--CHHHHHHHHHHHHHTCSSCC-CHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHC-------C--CHHHHHHHHHHHHcCCCCCc-cHHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence 014555677777777653 1 23466677888777 77 99999999999999865 667777788888
Q ss_pred H----cccHHHHHHHHHHHHhc
Q 015472 229 E----LDHINEARSIYKRCYSK 246 (406)
Q Consensus 229 ~----~g~~~~ar~l~~ral~~ 246 (406)
. .++++.|..+|++|+..
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHH
T ss_pred cCCCcccCHHHHHHHHHHHHHc
Confidence 7 89999999999999974
No 75
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.94 E-value=2.7e-08 Score=93.18 Aligned_cols=170 Identities=14% Similarity=-0.012 Sum_probs=131.5
Q ss_pred CCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHH
Q 015472 53 FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLD 132 (406)
Q Consensus 53 ~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~ 132 (406)
.|.+.+.+...+..+...+ ..+.|..+|++|+...|.+..+|..++..+ ...++.++|..+|++++...|......+.
T Consensus 113 lp~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~la~~~-~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQES-NYTDALPLLXDAWQLSNQNGEIGLLLAETL-IALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTTSCHHHHHHHHHHH-HHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCC-CHHHHHHHHHHHHHhCCcchhHHHHHHHHH-HHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 4888999998887776544 678999999999999999999999999744 46899999999999998876642221111
Q ss_pred HHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 015472 133 LFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (406)
Q Consensus 133 l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~ 212 (406)
.... ... . .+...+...|++++.. .|.+..++..++.++...| +++.|...|++++..
T Consensus 191 ~~~~---l~~-~----------~~~~~a~~~l~~al~~-------~P~~~~~~~~la~~l~~~g-~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 191 AQIE---LLX-Q----------AADTPEIQQLQQQVAE-------NPEDAALATQLALQLHQVG-RNEEALELLFGHLRX 248 (287)
T ss_dssp HHHH---HHH-H----------HTSCHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHH---HHh-h----------cccCccHHHHHHHHhc-------CCccHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhc
Confidence 1111 110 0 1111234556666554 4566778999999999999 999999999999999
Q ss_pred ccch--HHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 213 SGAM--LEAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 213 ~~~~--~~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
.|++ ...|...+.+....|+.+.|...|.+++..
T Consensus 249 ~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 249 DLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 9987 889999999999999999999999999863
No 76
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.91 E-value=5.4e-09 Score=88.18 Aligned_cols=140 Identities=9% Similarity=-0.106 Sum_probs=97.4
Q ss_pred hcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHH
Q 015472 35 SSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEIST 114 (406)
Q Consensus 35 ~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~ 114 (406)
+.|+++++...|++++...|.++..|...+...... +..+.|...|++|+...|.+..+|..++..+ ...+++++|..
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~-~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~-~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEA-KEYDLAKKYICTYINVQERDPKAHRFLGLLY-ELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCchHHHHH
Confidence 346777888888888888888888888777766554 3678888888888888888888888888644 34677877777
Q ss_pred HHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHH
Q 015472 115 VFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQS 194 (406)
Q Consensus 115 if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~ 194 (406)
.|++++...|.. ..+|..++.+...
T Consensus 87 ~~~~al~~~p~~-------------------------------------------------------~~~~~~la~~~~~ 111 (150)
T 4ga2_A 87 CYRRSVELNPTQ-------------------------------------------------------KDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHHHCTTC-------------------------------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCC-------------------------------------------------------HHHHHHHHHHHHH
Confidence 777776654432 2344445555556
Q ss_pred cCCCHHHHH-HHHHHHHHhccchHHHHHHHHHHHHHccc
Q 015472 195 MGKDMVSAR-GVWERLLKISGAMLEAWQSYISMEIELDH 232 (406)
Q Consensus 195 ~~~d~~~Ar-~ife~al~~~~~~~~lW~~y~~~E~~~g~ 232 (406)
.| +.+.|. ..++++++.+|+++.+|.....+....|+
T Consensus 112 ~~-~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 112 ND-VTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HC-SSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred cC-ChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 66 554444 44578888888888877777766666553
No 77
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.91 E-value=5.2e-08 Score=79.62 Aligned_cols=110 Identities=15% Similarity=0.018 Sum_probs=97.8
Q ss_pred CChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHH
Q 015472 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVR 97 (406)
Q Consensus 18 ~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~ 97 (406)
.||+....|..-+....+.|+++.|...|++||..+|.++.+|...+..+... +..+.|...|++|+...|.....|..
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKL-MEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhh-ccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 46788889999999889999999999999999999999999999999887764 46889999999999999999999999
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCccccHHH
Q 015472 98 SLLSLERSRASEEEISTVFEKSLLCAFSTFEE 129 (406)
Q Consensus 98 y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~ 129 (406)
++..+. ..+++++|...|++++...|.....
T Consensus 87 lg~~~~-~~~~~~~A~~~~~~al~l~P~~~~a 117 (126)
T 4gco_A 87 KAACLV-AMREWSKAQRAYEDALQVDPSNEEA 117 (126)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHH-HCCCHHHHHHHHHHHHHHCcCCHHH
Confidence 998554 5899999999999999988765443
No 78
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.90 E-value=3.7e-08 Score=101.06 Aligned_cols=165 Identities=12% Similarity=-0.052 Sum_probs=111.7
Q ss_pred cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHH
Q 015472 36 SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTV 115 (406)
Q Consensus 36 ~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~i 115 (406)
.|+++.|...|++++..+|.+...|..++..+...+ ..+.|...|++|+...|....+|..++..+ ...+++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMG-DTTAGEMAVQRGLALHPGHPEAVARLGRVR-WTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHTTSTTCHHHHHHHHHHH-HHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHCCCHHHHHHH
Confidence 367888999999999999999999999998776654 678899999999999999999999988755 457899999999
Q ss_pred HHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHc
Q 015472 116 FEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSM 195 (406)
Q Consensus 116 f~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~ 195 (406)
|++++...|.....+..+...+. . .++++.+...|+++++. .+....++..++.+....
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~-----~---------~g~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALE-----D---------AGQAEAAAAAYTRAHQL-------LPEEPYITAQLLNWRRRL 138 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHH-----H---------TTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHH-----H---------cCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHh
Confidence 99999977765554444332221 1 14556677777777665 244456888888888888
Q ss_pred ---CCCHHHHHHHHHHHHHhccchHHHHHHHH
Q 015472 196 ---GKDMVSARGVWERLLKISGAMLEAWQSYI 224 (406)
Q Consensus 196 ---~~d~~~Ar~ife~al~~~~~~~~lW~~y~ 224 (406)
| +.+.|...|++++...|.+...|...+
T Consensus 139 ~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 139 CDWR-ALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp TCCT-THHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred hccc-cHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 7 899999999999999998766554444
No 79
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.88 E-value=6.8e-07 Score=80.15 Aligned_cols=182 Identities=12% Similarity=0.007 Sum_probs=126.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHH---HHHHH
Q 015472 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS---DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGE---LWVRS 98 (406)
Q Consensus 25 ~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~---~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~---lW~~y 98 (406)
.+...+......|+++.|...|++++..+|.++ ..|...+...... +..+.|...|++++...|.+.. .|...
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~-~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN-ADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 455555556678999999999999999999774 6777777666554 4788999999999999998753 34433
Q ss_pred HHHHHH-----------------ccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHH
Q 015472 99 LLSLER-----------------SRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIR 161 (406)
Q Consensus 99 ~~~lE~-----------------~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r 161 (406)
+..+.. ..++.++|...|++++...|........ ..++. .+.
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a--~~~l~-------------------~~~ 143 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDA--TKRLV-------------------FLK 143 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHH--HHHHH-------------------HHH
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHH--HHHHH-------------------HHH
Confidence 332221 1356788888888888865542111100 00000 000
Q ss_pred HHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchH---HHHHHHHHHHHHcccHHHHHH
Q 015472 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAML---EAWQSYISMEIELDHINEARS 238 (406)
Q Consensus 162 ~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~---~lW~~y~~~E~~~g~~~~ar~ 238 (406)
.. ........+.+....| ++..|...|++++..+|+++ ++|...+......|+++.|..
T Consensus 144 ~~-----------------~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~ 205 (225)
T 2yhc_A 144 DR-----------------LAKYEYSVAEYYTERG-AWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEK 205 (225)
T ss_dssp HH-----------------HHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HH-----------------HHHHHHHHHHHHHHcC-cHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHH
Confidence 00 0012234566667788 99999999999999998765 689999999999999999999
Q ss_pred HHHHHHhc
Q 015472 239 IYKRCYSK 246 (406)
Q Consensus 239 l~~ral~~ 246 (406)
.|+++...
T Consensus 206 ~~~~l~~~ 213 (225)
T 2yhc_A 206 VAKIIAAN 213 (225)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhh
Confidence 99998873
No 80
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.85 E-value=4.6e-08 Score=82.92 Aligned_cols=105 Identities=8% Similarity=-0.068 Sum_probs=95.1
Q ss_pred ChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHH
Q 015472 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRS 98 (406)
Q Consensus 19 ~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y 98 (406)
+|.+...|...+......|+++.|...|++++..+|.++..|...+..+... +..+.|...|++|+...|.+...|..+
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~-g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIK-EQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-ccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 5788899999998889999999999999999999999999999999877764 478999999999999999999999999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCccc
Q 015472 99 LLSLERSRASEEEISTVFEKSLLCAFS 125 (406)
Q Consensus 99 ~~~lE~~~~~~e~ar~if~~al~~~~~ 125 (406)
+..+. ..+++++|...|++++...++
T Consensus 111 g~~~~-~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 111 GQCQL-RLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHH-HcCCHHHHHHHHHHHHHhCCC
Confidence 98654 589999999999999997654
No 81
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.84 E-value=5.5e-07 Score=83.28 Aligned_cols=177 Identities=13% Similarity=0.117 Sum_probs=129.9
Q ss_pred CCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCc-
Q 015472 53 FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKN--------CPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA- 123 (406)
Q Consensus 53 ~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~--------~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~- 123 (406)
.|....+|...+..+...+ ..+.|..+|++|+.. .|....+|..++..+ ...+++++|..+|++++...
T Consensus 23 ~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQG-RYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVY-RDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHH
Confidence 5666778888887776544 678999999999984 455567777777644 45899999999999999752
Q ss_pred -------cccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcC-CchHHHHHHHHHHHHHHc
Q 015472 124 -------FSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSM 195 (406)
Q Consensus 124 -------~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~ 195 (406)
+.....+..+...+ . ..+++..+...|++++......... .+....++...+.+....
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~-----~---------~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 166 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLY-----G---------KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ 166 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHH-----H---------TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT
T ss_pred HHhCCCChHHHHHHHHHHHHH-----H---------HcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Confidence 11111122111111 0 1145667888888888765433222 244566788889999889
Q ss_pred CCCHHHHHHHHHHHHHh--------ccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 196 GKDMVSARGVWERLLKI--------SGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 196 ~~d~~~Ar~ife~al~~--------~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
| +++.|..+|++++.. .|....+|...+.+....|+++.|..+|++++..
T Consensus 167 ~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 167 G-KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp T-CHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9 999999999999998 5666788999999999999999999999999963
No 82
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.84 E-value=8e-08 Score=101.21 Aligned_cols=166 Identities=10% Similarity=-0.035 Sum_probs=132.2
Q ss_pred CCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCcc
Q 015472 53 FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRAT--------KNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAF 124 (406)
Q Consensus 53 ~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~--------~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~ 124 (406)
+|.++..+...+ ...+..+.|...|++|+ ...|.+..+|...+..+ ...+++++|...|++++...|
T Consensus 390 ~p~~~~a~~~~a----~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~-~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 390 DPTDVAASVLQA----TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRAL-LDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CTTSTTHHHHHH----TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHC
T ss_pred CCCCcchHHhhc----ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHH-HhcCCHHHHHHHHHHHhccCc
Confidence 566666555433 12346788999999999 88899999999988744 457999999999999999877
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHH
Q 015472 125 STFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARG 204 (406)
Q Consensus 125 ~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ 204 (406)
..+..+..+...+. ..++++.+...|++++.. .|.....|..++.+....| +++. ..
T Consensus 465 ~~~~a~~~lg~~~~--------------~~g~~~~A~~~~~~al~l-------~P~~~~~~~~lg~~~~~~g-~~~~-~~ 521 (681)
T 2pzi_A 465 WRWRLVWYRAVAEL--------------LTGDYDSATKHFTEVLDT-------FPGELAPKLALAATAELAG-NTDE-HK 521 (681)
T ss_dssp CCHHHHHHHHHHHH--------------HHTCHHHHHHHHHHHHHH-------STTCSHHHHHHHHHHHHHT-CCCT-TC
T ss_pred chHHHHHHHHHHHH--------------HcCCHHHHHHHHHHHHHh-------CCCChHHHHHHHHHHHHcC-ChHH-HH
Confidence 76655554443221 114566788888888775 3445668889999999999 8999 99
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 205 VWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 205 ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
.|++++..+|+++..|...+......|+++.|...|++++..
T Consensus 522 ~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 563 (681)
T 2pzi_A 522 FYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPT 563 (681)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999974
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.83 E-value=1.7e-07 Score=79.50 Aligned_cols=102 Identities=13% Similarity=-0.003 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHH
Q 015472 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLL 100 (406)
Q Consensus 21 ~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~ 100 (406)
.....|...+......|+++.+...|++++...|.+..+|..++..+...+ ..+.+...|++++...|....+|..++.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 118 (186)
T 3as5_A 40 FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQ-KYDLAVPLLIKVAEANPINFNVRFRLGV 118 (186)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCcHhHHHHHHHHH
Confidence 356778888888888999999999999999999999999999998777654 6789999999999999999999988887
Q ss_pred HHHHccCCHHHHHHHHHHHHhCcc
Q 015472 101 SLERSRASEEEISTVFEKSLLCAF 124 (406)
Q Consensus 101 ~lE~~~~~~e~ar~if~~al~~~~ 124 (406)
.+ ...+++++|..+|++++...+
T Consensus 119 ~~-~~~~~~~~A~~~~~~~~~~~~ 141 (186)
T 3as5_A 119 AL-DNLGRFDEAIDSFKIALGLRP 141 (186)
T ss_dssp HH-HHTTCHHHHHHHHHHHHHHCT
T ss_pred HH-HHcCcHHHHHHHHHHHHhcCc
Confidence 54 357888888888888776443
No 84
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.82 E-value=1.2e-06 Score=82.96 Aligned_cols=232 Identities=9% Similarity=0.061 Sum_probs=174.8
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhcCCCCHHHHHHHHHHH----HHhc--chhh
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSG--DPGRVQLLYERAITDFPVSSDLWLDYTQYL----DKTL--KVGN 75 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g--~~~~~~~lyEral~~~P~~~~lW~~Y~~~l----~~~~--~~~e 75 (406)
+-..++.+|..+| +.+.+|..-.......| .++.+...++.+|..+|.+..+|......+ ...+ ...+
T Consensus 52 aL~~t~~~L~~nP----~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 52 ALHITELGINELA----SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHCT----TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHCc----HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 4456788888876 57889998888888888 899999999999999999999999998877 4321 3567
Q ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHH--HHHHHHHHHHhCccc--cHHHHHHHHHHHHHHHHHHHhccccc
Q 015472 76 VVRDVYSRATKNCPWVGELWVRSLLSLERSRASEE--EISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEV 151 (406)
Q Consensus 76 ~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e--~ar~if~~al~~~~~--~~~~~~~l~~~~~~~l~Rr~~~~~~~ 151 (406)
.+..++++++...|.+..+|....-.+.. .+..+ +....+.+++...+. ..|.+....+. ..
T Consensus 128 ~EL~~~~~~l~~~pkny~aW~~R~~vl~~-l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~-------~l------ 193 (306)
T 3dra_A 128 REFDILEAMLSSDPKNHHVWSYRKWLVDT-FDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLF-------SK------ 193 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-------SS------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------hc------
Confidence 88999999999999999999988765553 56666 888899999987664 34433322110 00
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---cchHHHHHHHHHHHH
Q 015472 152 EGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS---GAMLEAWQSYISMEI 228 (406)
Q Consensus 152 e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~---~~~~~lW~~y~~~E~ 228 (406)
+.. .....++++++++...+...|.+...|.+..-+....|.....+..+.++++... +.+...|...++...
T Consensus 194 ---~~~-~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~ 269 (306)
T 3dra_A 194 ---KHL-ATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYT 269 (306)
T ss_dssp ---GGG-CCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHH
T ss_pred ---ccc-chhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence 000 1234678888887777766777888999888888888855677778888887765 667777888888777
Q ss_pred HcccHHHHHHHHHHHHhcccCCCChHHHHHH
Q 015472 229 ELDHINEARSIYKRCYSKRFTGTGSEDICHA 259 (406)
Q Consensus 229 ~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~ 259 (406)
..|+.+.|..+|+++..+ + .+.....|.-
T Consensus 270 ~~~~~~~A~~~~~~l~~~-~-Dpir~~yW~~ 298 (306)
T 3dra_A 270 QQKKYNESRTVYDLLKSK-Y-NPIRSNFWDY 298 (306)
T ss_dssp HTTCHHHHHHHHHHHHHT-T-CGGGHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhc-c-ChHHHHHHHH
Confidence 889999999999999863 2 2334566763
No 85
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.81 E-value=4.8e-08 Score=82.24 Aligned_cols=126 Identities=11% Similarity=-0.011 Sum_probs=100.7
Q ss_pred CchhhHHHHHHHhcC---CCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhH
Q 015472 1 MCNARAHLEEQISRQ---DLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVV 77 (406)
Q Consensus 1 ~~~~R~~yE~~L~~~---~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a 77 (406)
++..+..+|.+|... -..+|+....|...+......|+++.|...|+++|..+|.++..|..++..+...+ ..+.|
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~-~~~~A 84 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE-NTDKA 84 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHH
T ss_pred HHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-chHHH
Confidence 355667777777543 12346677788888888889999999999999999999999999999998877654 68899
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHH-HHHHHHHHHHhCccccHH
Q 015472 78 RDVYSRATKNCPWVGELWVRSLLSLERSRASEE-EISTVFEKSLLCAFSTFE 128 (406)
Q Consensus 78 ~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e-~ar~if~~al~~~~~~~~ 128 (406)
...|++|+...|....+|..++..+. ..++++ .++..+++|+...|....
T Consensus 85 ~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~aa~~~~~~al~l~P~~~~ 135 (150)
T 4ga2_A 85 VECYRRSVELNPTQKDLVLKIAELLC-KNDVTDGRAKYWVERAAKLFPGSPA 135 (150)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHH-HHCSSSSHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHhCcCCHH
Confidence 99999999999999999999997554 356665 455567999998776443
No 86
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.81 E-value=4.8e-08 Score=82.19 Aligned_cols=116 Identities=8% Similarity=-0.059 Sum_probs=100.0
Q ss_pred hhhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHH
Q 015472 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (406)
Q Consensus 3 ~~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vye 82 (406)
++...|+.+|...| .....|...+......|+++.+...|++++..+|.++.+|..++..+... +..+.|...|+
T Consensus 5 ~~~~~~~~al~~~p----~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~ 79 (148)
T 2vgx_A 5 SGGGTIAMLNEISS----DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAM-GQYDLAIHSYS 79 (148)
T ss_dssp -CCCSHHHHTTCCH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred chhhhHHHHHcCCH----hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHH-hhHHHHHHHHH
Confidence 34456777777664 57888999999999999999999999999999999999999999877654 47889999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCcc
Q 015472 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAF 124 (406)
Q Consensus 83 rA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~ 124 (406)
+|+...|....+|..++..+ ...+++++|...|++++...|
T Consensus 80 ~al~l~p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 80 YGAVMDIXEPRFPFHAAECL-LQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp HHHHHSTTCTHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCchHHHHHHHHH-HHcCCHHHHHHHHHHHHHHCc
Confidence 99999999999999988755 458999999999999998654
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.75 E-value=9.2e-07 Score=80.29 Aligned_cols=193 Identities=10% Similarity=0.020 Sum_probs=132.2
Q ss_pred hhhHHHHHHHhcCC----CCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHh
Q 015472 3 NARAHLEEQISRQD----LSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDF--------PVSSDLWLDYTQYLDKT 70 (406)
Q Consensus 3 ~~R~~yE~~L~~~~----~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~--------P~~~~lW~~Y~~~l~~~ 70 (406)
.+...|+.+|.... ..++.....|...+......|+++.+...|++++... |....+|..++..+...
T Consensus 19 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (283)
T 3edt_B 19 SAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKR 98 (283)
T ss_dssp SHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence 35667777776431 1125667788888988899999999999999999773 55677788888776654
Q ss_pred cchhhhHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--------ccccHHHHHHHH
Q 015472 71 LKVGNVVRDVYSRATKNC--------PWVGELWVRSLLSLERSRASEEEISTVFEKSLLC--------AFSTFEEYLDLF 134 (406)
Q Consensus 71 ~~~~e~a~~vyerA~~~~--------P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~--------~~~~~~~~~~l~ 134 (406)
+..+.|...|++|+..+ |....+|..++..+ ...+++++|..+|++++.. .+.....+..+.
T Consensus 99 -g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 176 (283)
T 3edt_B 99 -GKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLC-QNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLA 176 (283)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred -ccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 46889999999999873 55567788877644 4689999999999999986 222222222221
Q ss_pred HHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhh-----------------------------------------
Q 015472 135 LTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSE----------------------------------------- 173 (406)
Q Consensus 135 ~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~----------------------------------------- 173 (406)
..+ .. .+++..+...|++++.....
T Consensus 177 ~~~-----~~---------~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (283)
T 3edt_B 177 SCY-----LK---------QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYK 242 (283)
T ss_dssp HHH-----HH---------HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------
T ss_pred HHH-----HH---------cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 111 01 13344455555555543211
Q ss_pred -hhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 015472 174 -QMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (406)
Q Consensus 174 -~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~ 212 (406)
.....+....++..++.+....| +++.|..+|++++..
T Consensus 243 ~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 243 ACKVDSPTVNTTLRSLGALYRRQG-KLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred hcCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 01122445667888899999999 999999999999865
No 88
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.75 E-value=6.6e-08 Score=90.32 Aligned_cols=192 Identities=10% Similarity=-0.053 Sum_probs=139.7
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015472 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (406)
Q Consensus 22 ~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~ 101 (406)
....|...+......|+++.|...|++++..+|.++.+|..++..+... +..+.|...|++|+...|.+..+|..++..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM-QQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3557778888888899999999999999999999999999999877764 478899999999999999999999999875
Q ss_pred HHHccCCHHHHHHHHHHHHhCccccH---HHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCC
Q 015472 102 LERSRASEEEISTVFEKSLLCAFSTF---EEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNT 178 (406)
Q Consensus 102 lE~~~~~~e~ar~if~~al~~~~~~~---~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~ 178 (406)
+. ..+++++|...|.+++...|... ...+...+... .. ..+...... . .
T Consensus 82 ~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~--------------------~~-~~~~~~~~~---~---~ 133 (281)
T 2c2l_A 82 QL-EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA--------------------KK-KRWNSIEER---R---I 133 (281)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH--------------------HH-HHHHHHHHT---C---C
T ss_pred HH-HcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHH--------------------HH-HHHHHHHHH---H---H
Confidence 54 58999999999999998655310 00111110000 00 001111010 0 1
Q ss_pred chHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHc-ccHHHHHHHHHHHHh
Q 015472 179 DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIEL-DHINEARSIYKRCYS 245 (406)
Q Consensus 179 ~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~-g~~~~ar~l~~ral~ 245 (406)
+....+...++.+. .| +++.|...|++++...|++..+......+.... +.++.+..+|.++..
T Consensus 134 ~~~~~i~~~l~~l~--~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 134 HQESELHSYLTRLI--AA-ERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp CCCCHHHHHHHHHH--HH-HHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred hhhHHHHHHHHHHH--HH-HHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 11223444444443 46 889999999999999998888887777776666 678999999998875
No 89
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.72 E-value=1.9e-06 Score=83.26 Aligned_cols=223 Identities=11% Similarity=-0.007 Sum_probs=145.9
Q ss_pred hhHHHHHHHhcCCC-CC-hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHhcchh
Q 015472 4 ARAHLEEQISRQDL-SD-SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS-------DLWLDYTQYLDKTLKVG 74 (406)
Q Consensus 4 ~R~~yE~~L~~~~~-~~-~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~-------~lW~~Y~~~l~~~~~~~ 74 (406)
+...|+.++..... .+ +.....|...+......|+++.+...|++|+..++... .++...+..... .+..
T Consensus 122 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~ 200 (383)
T 3ulq_A 122 AIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLD-LKQY 200 (383)
T ss_dssp HHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHH-hcCH
Confidence 45567777765321 12 33456777777778888999999999999998865443 345555554443 3467
Q ss_pred hhHHHHHHHHHHhCCCCH------HHHHHHHHHHHHccCCHHHHHHHHHHHHhC-----c-cccHHHHHHHHHHHHHHHH
Q 015472 75 NVVRDVYSRATKNCPWVG------ELWVRSLLSLERSRASEEEISTVFEKSLLC-----A-FSTFEEYLDLFLTRIDGLR 142 (406)
Q Consensus 75 e~a~~vyerA~~~~P~~~------~lW~~y~~~lE~~~~~~e~ar~if~~al~~-----~-~~~~~~~~~l~~~~~~~l~ 142 (406)
+.|...|++|+...|..+ .+|...+..+ ...+++++|...|++|+.. . +.....+..+...+.
T Consensus 201 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~---- 275 (383)
T 3ulq_A 201 EDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCK-NSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHY---- 275 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH----
Confidence 889999999998664322 4666666533 4578999999999999983 2 222222222221111
Q ss_pred HHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHhccchHHH
Q 015472 143 RRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKD---MVSARGVWERLLKISGAMLEA 219 (406)
Q Consensus 143 Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d---~~~Ar~ife~al~~~~~~~~l 219 (406)
..+++..+...|++++...... . .+.....+..++.+....| + +.+|..++++. ...+....+
T Consensus 276 ----------~~g~~~~A~~~~~~al~~~~~~-~-~~~~~~~~~~l~~~~~~~~-~~~~~~~al~~~~~~-~~~~~~~~~ 341 (383)
T 3ulq_A 276 ----------KLGKIDKAHEYHSKGMAYSQKA-G-DVIYLSEFEFLKSLYLSGP-DEEAIQGFFDFLESK-MLYADLEDF 341 (383)
T ss_dssp ----------HTTCHHHHHHHHHHHHHHHHHH-T-CHHHHHHHHHHHHHHTSSC-CHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred ----------HCCCHHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHC-cCHHHHHHH
Confidence 1145667888888888765322 1 1222222344666666666 7 66677776665 234455678
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 220 WQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 220 W~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
+...+.+....|+++.|...|++++..
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 888999999999999999999999874
No 90
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.72 E-value=3.7e-06 Score=80.88 Aligned_cols=194 Identities=12% Similarity=0.072 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015472 24 QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLE 103 (406)
Q Consensus 24 ~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE 103 (406)
++|..+.....+.+-.+++..+++++|..+|.+..+|......+...+...+.+...++.++..+|.+..+|......+.
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34444444444444557899999999999999999999999888765435788999999999999999999999887676
Q ss_pred HccC-CHHHHHHHHHHHHhCccc--cHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCch
Q 015472 104 RSRA-SEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDG 180 (406)
Q Consensus 104 ~~~~-~~e~ar~if~~al~~~~~--~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~ 180 (406)
...+ +.++...++.++|...+. ..|.+....+...+. ... .....+.++++++...+...+.
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~------~~~---------~~~~~~~eELe~~~k~I~~dp~ 199 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFST------LGR---------ISEAQWGSELDWCNEMLRVDGR 199 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHH------TTC---------CCHHHHHHHHHHHHHHHHHCTT
T ss_pred HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc------ccc---------cchhhHHHHHHHHHHHHHhCCC
Confidence 5425 778888999999998775 344443322221110 000 0112334444544444444566
Q ss_pred HHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHhccchHHHHHHHHHHHHHccc
Q 015472 181 LLRLYAYWAHLEQSMGKD------MVSARGVWERLLKISGAMLEAWQSYISMEIELDH 232 (406)
Q Consensus 181 ~~~l~~~~a~~e~~~~~d------~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~ 232 (406)
+...|..-..+...+++. ++++...+.+++..+|++...|...--+....|.
T Consensus 200 N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 200 NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 778898877777666621 6889999999999999999999876666665554
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.71 E-value=1.3e-06 Score=69.60 Aligned_cols=93 Identities=17% Similarity=0.190 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015472 26 YMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERS 105 (406)
Q Consensus 26 w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~ 105 (406)
|...+......|+++.+..+|++++...|.+...|..++..+...+ ..+.+..+|++++...|....+|..++..+ ..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG-DYDEAIEYYQKALELDPRSAEAWYNLGNAY-YK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhc-CHHHHHHHHHHHHHHCCCchHHHHHHHHHH-HH
Confidence 3334444444555555666666665555555555555554443322 345555555555555555555554444322 23
Q ss_pred cCCHHHHHHHHHHHH
Q 015472 106 RASEEEISTVFEKSL 120 (406)
Q Consensus 106 ~~~~e~ar~if~~al 120 (406)
.+++++|..+|++++
T Consensus 82 ~~~~~~A~~~~~~~~ 96 (136)
T 2fo7_A 82 QGDYDEAIEYYQKAL 96 (136)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHH
Confidence 444444444444443
No 92
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.71 E-value=7.1e-07 Score=73.87 Aligned_cols=105 Identities=8% Similarity=-0.065 Sum_probs=93.1
Q ss_pred ChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHH
Q 015472 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRS 98 (406)
Q Consensus 19 ~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y 98 (406)
+|.....|...+......|+++.+...|++++..+|.++.+|..++..+... +..+.|...|++|+...|.+..+|..+
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL-GLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 3567888988888888999999999999999999999999999999877764 478899999999999999999999998
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCccc
Q 015472 99 LLSLERSRASEEEISTVFEKSLLCAFS 125 (406)
Q Consensus 99 ~~~lE~~~~~~e~ar~if~~al~~~~~ 125 (406)
+..+ ...+++++|...|++++...|.
T Consensus 93 g~~~-~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 93 AECH-LQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp HHHH-HHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHH-HHcCCHHHHHHHHHHHHHhCCC
Confidence 8755 4589999999999999987553
No 93
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.70 E-value=2e-05 Score=75.34 Aligned_cols=191 Identities=9% Similarity=-0.018 Sum_probs=134.1
Q ss_pred HHhcCChh-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcch---------hhhHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015472 33 EQSSGDPG-RVQLLYERAITDFPVSSDLWLDYTQYLDKTLKV---------GNVVRDVYSRATKNCPWVGELWVRSLLSL 102 (406)
Q Consensus 33 E~~~g~~~-~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~---------~e~a~~vyerA~~~~P~~~~lW~~y~~~l 102 (406)
..+.|++. +|..+++.+|..+|.+..+|......+...+.. .+.....++.++..+|.+..+|....-.+
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34567764 899999999999999999999988887654321 35788999999999999999999988766
Q ss_pred HHccC-CHHHHHHHHHHHHhCccc--cHHHHHHHHHHHHHHHHHHHhccccchhhhh-HHHHHHHHHHHHHHHhhhhcCC
Q 015472 103 ERSRA-SEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLD-YSLIRETFQRASDYLSEQMKNT 178 (406)
Q Consensus 103 E~~~~-~~e~ar~if~~al~~~~~--~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~-~~~~r~~f~~a~~~l~~~~~~~ 178 (406)
...+. .++++..++.+++...|. ..|.+....+.. . +. +......+.++++ .+
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~-------l---------~~~~~eel~~~~~~I~-------~~ 175 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ-------A---------AVAPAEELAFTDSLIT-------RN 175 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------T---------TCCHHHHHHHHHHHHH-------HC
T ss_pred hccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------h---------CcCHHHHHHHHHHHHH-------HC
Confidence 54333 488999999999997764 344443222111 1 01 1122233334333 35
Q ss_pred chHHHHHHHHHHHHHHcC-------------CCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHc-----------ccHH
Q 015472 179 DGLLRLYAYWAHLEQSMG-------------KDMVSARGVWERLLKISGAMLEAWQSYISMEIEL-----------DHIN 234 (406)
Q Consensus 179 ~~~~~l~~~~a~~e~~~~-------------~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~-----------g~~~ 234 (406)
+.+...|..-..+...+. +.++.+...+.+++..+|++...|...--+.... +-++
T Consensus 176 p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~ 255 (331)
T 3dss_A 176 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQ 255 (331)
T ss_dssp SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHH
Confidence 666778887776666552 1367899999999999999999997544443333 3467
Q ss_pred HHHHHHHHHHhc
Q 015472 235 EARSIYKRCYSK 246 (406)
Q Consensus 235 ~ar~l~~ral~~ 246 (406)
++...+..++..
T Consensus 256 ~el~~~~elle~ 267 (331)
T 3dss_A 256 SELESCKELQEL 267 (331)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 888888888874
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.68 E-value=1.7e-06 Score=78.93 Aligned_cols=183 Identities=11% Similarity=-0.034 Sum_probs=114.9
Q ss_pred hhhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHh-------cc
Q 015472 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS---SDLWLDYTQYLDKT-------LK 72 (406)
Q Consensus 3 ~~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~---~~lW~~Y~~~l~~~-------~~ 72 (406)
.+...|+.+|...|. ++.....|...+......|+++.|...|++++..+|.+ +..|...+...... .+
T Consensus 33 ~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~ 111 (261)
T 3qky_A 33 RAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQT 111 (261)
T ss_dssp HHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCH
T ss_pred HHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccch
Confidence 356788999988873 23336678888888888999999999999999998865 45566666555430 34
Q ss_pred hhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccch
Q 015472 73 VGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVE 152 (406)
Q Consensus 73 ~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e 152 (406)
..+.|...|++++...|.+...+..+..... ++..+... ++.+. .+ . .
T Consensus 112 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~--------~~~~~~~~----------~~~la--~~---~---------~ 159 (261)
T 3qky_A 112 DTRKAIEAFQLFIDRYPNHELVDDATQKIRE--------LRAKLARK----------QYEAA--RL---Y---------E 159 (261)
T ss_dssp HHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH--------HHHHHHHH----------HHHHH--HH---H---------H
T ss_pred hHHHHHHHHHHHHHHCcCchhHHHHHHHHHH--------HHHHHHHH----------HHHHH--HH---H---------H
Confidence 6789999999999999988766644432111 11111000 01110 00 0 0
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHc----------CCCHHHHHHHHHHHHHhccchHHHHHH
Q 015472 153 GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSM----------GKDMVSARGVWERLLKISGAMLEAWQS 222 (406)
Q Consensus 153 ~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~----------~~d~~~Ar~ife~al~~~~~~~~lW~~ 222 (406)
..+++..+...|++++...+. .+.....+...+.....+ | +++.|...|++++..+|+++.+...
T Consensus 160 ~~g~~~~A~~~~~~~l~~~p~----~~~~~~a~~~l~~~~~~~g~~~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~a 234 (261)
T 3qky_A 160 RRELYEAAAVTYEAVFDAYPD----TPWADDALVGAMRAYIAYAEQSVRARQPE-RYRRAVELYERLLQIFPDSPLLRTA 234 (261)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT----STTHHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred HccCHHHHHHHHHHHHHHCCC----CchHHHHHHHHHHHHHHhcccchhhcccc-hHHHHHHHHHHHHHHCCCChHHHHH
Confidence 013445566666666554211 111234555555555544 6 7899999999999999987654443
Q ss_pred H
Q 015472 223 Y 223 (406)
Q Consensus 223 y 223 (406)
+
T Consensus 235 ~ 235 (261)
T 3qky_A 235 E 235 (261)
T ss_dssp H
T ss_pred H
Confidence 3
No 95
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.66 E-value=8.6e-06 Score=77.82 Aligned_cols=228 Identities=10% Similarity=-0.012 Sum_probs=150.7
Q ss_pred hHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc-h
Q 015472 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGD----------PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLK-V 73 (406)
Q Consensus 5 R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~----------~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~-~ 73 (406)
-..++.+|..+| +++.+|..-.......|. +.....+++.+|..+|.++.+|....-.+...+. .
T Consensus 50 L~~t~~~L~~nP----~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 50 LELTSQILGANP----DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHTTCT----TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHCc----hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence 345677777766 578889765555544433 5678899999999999999999999877765432 3
Q ss_pred hhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCC-HHHHHHHHHHHHhCccc--cHHHHHHHHHHHHHHHHHHHhcccc
Q 015472 74 GNVVRDVYSRATKNCPWVGELWVRSLLSLERSRAS-EEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGE 150 (406)
Q Consensus 74 ~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~-~e~ar~if~~al~~~~~--~~~~~~~l~~~~~~~l~Rr~~~~~~ 150 (406)
.+.+..++++++...|.+...|....-.+.. .+. .+++...+.+++...|. ..|.+....+.. +.....
T Consensus 126 ~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~-l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~-------l~~~~~ 197 (331)
T 3dss_A 126 WARELELCARFLEADERNFHCWDYRRFVAAQ-AAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ-------LHPQPD 197 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-------HSCCC-
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-------hhhccc
Confidence 5789999999999999999999887755544 444 68888999999987664 445444333211 110000
Q ss_pred chhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHc-C---------CCHHHHHHHHHHHHHhccchHHHH
Q 015472 151 VEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSM-G---------KDMVSARGVWERLLKISGAMLEAW 220 (406)
Q Consensus 151 ~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~-~---------~d~~~Ar~ife~al~~~~~~~~lW 220 (406)
...... .....++++++++...+...|.+...|.+..-+.... | +-++++...++.++...|++.-..
T Consensus 198 ~~~~~~--~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l 275 (331)
T 3dss_A 198 SGPQGR--LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCL 275 (331)
T ss_dssp -----C--CCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccccc--cchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHH
Confidence 000000 0123455555555555544666778897554444433 1 136789999999999999985444
Q ss_pred HHHHHHHHH---cccHHHHHHHHHHHHhc
Q 015472 221 QSYISMEIE---LDHINEARSIYKRCYSK 246 (406)
Q Consensus 221 ~~y~~~E~~---~g~~~~ar~l~~ral~~ 246 (406)
+..+-+... .|..+.++.+|.+.+..
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 555444332 47788899999998863
No 96
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.65 E-value=1.8e-06 Score=80.77 Aligned_cols=208 Identities=8% Similarity=-0.035 Sum_probs=131.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCC------H
Q 015472 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPV------SSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV------G 92 (406)
Q Consensus 25 ~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~------~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~------~ 92 (406)
.+..-+......|+++.+...|++|+..++. ....|...+..+... +..+.|...|++|+...|.. .
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~-g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSG-GNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4444455556789999999999999988532 256777777776654 46889999999999877643 3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCccc--cHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHH
Q 015472 93 ELWVRSLLSLERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDY 170 (406)
Q Consensus 93 ~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~--~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~ 170 (406)
..|...+..+....+++++|...|++|+...+. ........+... ..+..+ .+++..+...|++++..
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l-g~~~~~---------~g~~~~A~~~~~~al~~ 187 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKC-ADLKAL---------DGQYIEASDIYSKLIKS 187 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHH---------TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH-HHHHHH---------hCCHHHHHHHHHHHHHH
Confidence 577777765543239999999999999986442 111111111111 111111 14566777888888775
Q ss_pred HhhhhcCC-chHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHH-----HHHHHHHHHH--HcccHHHHHHHHHH
Q 015472 171 LSEQMKNT-DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE-----AWQSYISMEI--ELDHINEARSIYKR 242 (406)
Q Consensus 171 l~~~~~~~-~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~-----lW~~y~~~E~--~~g~~~~ar~l~~r 242 (406)
.+.. ... ......+...+......| +++.|+..|++++..+|+... ++...+.... ..+++..|...|++
T Consensus 188 ~~~~-~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~ 265 (292)
T 1qqe_A 188 SMGN-RLSQWSLKDYFLKKGLCQLAAT-DAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (292)
T ss_dssp TSSC-TTTGGGHHHHHHHHHHHHHHTT-CHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HhcC-CcccHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Confidence 3111 000 011235667777788889 999999999999998886543 2333333222 34678888888888
Q ss_pred HHh
Q 015472 243 CYS 245 (406)
Q Consensus 243 al~ 245 (406)
++.
T Consensus 266 ~~~ 268 (292)
T 1qqe_A 266 FMR 268 (292)
T ss_dssp SSC
T ss_pred CCc
Confidence 764
No 97
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.65 E-value=5.6e-07 Score=92.25 Aligned_cols=150 Identities=10% Similarity=0.052 Sum_probs=108.3
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHH
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyer 83 (406)
+...|+.+|...| .....|..++......|+++.|...|++++..+|.+...|..++..+...+ ..+.|...|++
T Consensus 8 A~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~ 82 (568)
T 2vsy_A 8 ELLQLRAAVRHRP----QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQ-RHAEAAVLLQQ 82 (568)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHH
Confidence 4556777777665 357789998888888999999999999999999999999999998877654 68899999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHH
Q 015472 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRET 163 (406)
Q Consensus 84 A~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~ 163 (406)
|+...|.+..+|..++..+ ...+++++|...|++++...|.....+..+...+. .. ..+++++.+...
T Consensus 83 al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-----~~------~~~g~~~~A~~~ 150 (568)
T 2vsy_A 83 ASDAAPEHPGIALWLGHAL-EDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRR-----RL------CDWRALDVLSAQ 150 (568)
T ss_dssp HHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----HT------TCCTTHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----Hh------hccccHHHHHHH
Confidence 9999999999999998754 46899999999999999987765444433332111 11 012455567777
Q ss_pred HHHHHHH
Q 015472 164 FQRASDY 170 (406)
Q Consensus 164 f~~a~~~ 170 (406)
|++++..
T Consensus 151 ~~~al~~ 157 (568)
T 2vsy_A 151 VRAAVAQ 157 (568)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 7777664
No 98
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.64 E-value=8.1e-08 Score=92.21 Aligned_cols=61 Identities=8% Similarity=0.068 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 015472 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (406)
Q Consensus 184 l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~ 245 (406)
+|..++.....+| +++.|...|++++...|+++..|...+......|+++.|...|++|+.
T Consensus 198 ~~~nla~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 198 SHLNLAMCHLKLQ-AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3334444444555 555555555555555555555555555555555555555555555554
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.64 E-value=8.4e-07 Score=82.94 Aligned_cols=169 Identities=9% Similarity=-0.115 Sum_probs=126.9
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015472 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (406)
Q Consensus 22 ~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~ 101 (406)
..+.+...+......|+++.|..+|++++..+|.++..|..++..+...+ ..+.|..+|++++...|.....+......
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g-~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALN-RSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTT-CHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCC-CHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 45677777777888999999999999999999999999999998887654 68899999999999999654444444332
Q ss_pred HHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchH
Q 015472 102 LERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGL 181 (406)
Q Consensus 102 lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~ 181 (406)
+. ..+..+.+...|++++...|+....++.+...+. ..++++.+...|.+++..- | ....
T Consensus 195 l~-~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~--------------~~g~~~~A~~~l~~~l~~~-p----~~~~ 254 (287)
T 3qou_A 195 LL-XQAADTPEIQQLQQQVAENPEDAALATQLALQLH--------------QVGRNEEALELLFGHLRXD-L----TAAD 254 (287)
T ss_dssp HH-HHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------------HTTCHHHHHHHHHHHHHHC-T----TGGG
T ss_pred HH-hhcccCccHHHHHHHHhcCCccHHHHHHHHHHHH--------------HcccHHHHHHHHHHHHhcc-c----cccc
Confidence 32 3455667888999999988876665555443221 1145567777888877652 1 1112
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 015472 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (406)
Q Consensus 182 ~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~ 212 (406)
...+..++.+...+| +.+.|...|.+++..
T Consensus 255 ~~a~~~l~~~~~~~g-~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 255 GQTRXTFQEILAALG-TGDALASXYRRQLYA 284 (287)
T ss_dssp GHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcC-CCCcHHHHHHHHHHH
Confidence 568888999999999 889999999999864
No 100
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.63 E-value=3.9e-07 Score=78.03 Aligned_cols=146 Identities=14% Similarity=0.137 Sum_probs=96.6
Q ss_pred cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCH--HHHH
Q 015472 36 SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASE--EEIS 113 (406)
Q Consensus 36 ~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~--e~ar 113 (406)
.|+++.+...|++++..+|.++.+|..++..+... +..+.|...|++|+...|.+..+|..++..+....+++ ++|.
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQ-NDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 46777888888888888888888888888777654 36788888888888888888888888776523345555 6676
Q ss_pred HHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHH
Q 015472 114 TVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQ 193 (406)
Q Consensus 114 ~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~ 193 (406)
.+|++++...|. ...+|..++.+..
T Consensus 102 ~~~~~al~~~p~-------------------------------------------------------~~~~~~~la~~~~ 126 (177)
T 2e2e_A 102 AMIDKALALDSN-------------------------------------------------------EITALMLLASDAF 126 (177)
T ss_dssp HHHHHHHHHCTT-------------------------------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-------------------------------------------------------cHHHHHHHHHHHH
Confidence 666666554332 2234445555556
Q ss_pred HcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 015472 194 SMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (406)
Q Consensus 194 ~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~ 245 (406)
..| +++.|...|++++...|++...+... ..+..++.+......
T Consensus 127 ~~g-~~~~A~~~~~~al~~~p~~~~~~~~~-------~~i~~~~~~~~~~~~ 170 (177)
T 2e2e_A 127 MQA-NYAQAIELWQKVMDLNSPRINRTQLV-------ESINMAKLLQRRSDL 170 (177)
T ss_dssp HTT-CHHHHHHHHHHHHHTCCTTSCHHHHH-------HHHHHHHHHHHHHHH
T ss_pred Hcc-cHHHHHHHHHHHHhhCCCCccHHHHH-------HHHHHHHHhcCCCCC
Confidence 677 78888888888888887765433221 234455555555443
No 101
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.62 E-value=7.1e-07 Score=75.58 Aligned_cols=104 Identities=13% Similarity=0.041 Sum_probs=93.1
Q ss_pred hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHH
Q 015472 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSL 99 (406)
Q Consensus 20 ~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~ 99 (406)
+.....|...+......|+++.+...|++++..+|.++.+|..++..+... +..+.|...|++|+...|....+|..++
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSAS-GQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 456778988888888999999999999999999999999999999877764 4688999999999999999999999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCccc
Q 015472 100 LSLERSRASEEEISTVFEKSLLCAFS 125 (406)
Q Consensus 100 ~~lE~~~~~~e~ar~if~~al~~~~~ 125 (406)
..+ ...+++++|...|++++...|.
T Consensus 87 ~~~-~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 87 LAR-FDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHH-HHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHH-HHccCHHHHHHHHHHHHHhCCC
Confidence 855 4589999999999999997665
No 102
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.62 E-value=7.2e-07 Score=76.32 Aligned_cols=116 Identities=11% Similarity=0.045 Sum_probs=100.4
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHhcchh--hhHHHH
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQY-LDKTLKVG--NVVRDV 80 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~-l~~~~~~~--e~a~~v 80 (406)
+...|+.+|...| .+...|..++......|+++.+...|++++..+|.++.+|..++.. .... +.. +.|...
T Consensus 29 A~~~~~~al~~~p----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~-~~~~~~~A~~~ 103 (177)
T 2e2e_A 29 QLQALQDKIRANP----QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQA-SQHMTAQTRAM 103 (177)
T ss_dssp CCHHHHHHHHHCC----SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT-TTCCCHHHHHH
T ss_pred HHHHHHHHHHhCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc-CCcchHHHHHH
Confidence 4567888998887 2567899999999999999999999999999999999999999987 4443 455 889999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccc
Q 015472 81 YSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (406)
Q Consensus 81 yerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~ 125 (406)
|++++...|.+..+|..++..+ ...+++++|...|.+++...|.
T Consensus 104 ~~~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 104 IDKALALDSNEITALMLLASDA-FMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHhCCCcHHHHHHHHHHH-HHcccHHHHHHHHHHHHhhCCC
Confidence 9999999999999999988744 4589999999999999997664
No 103
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.62 E-value=5e-06 Score=77.61 Aligned_cols=209 Identities=13% Similarity=0.121 Sum_probs=136.3
Q ss_pred ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCCHHH
Q 015472 38 DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPW------VGELWVRSLLSLERSRASEEE 111 (406)
Q Consensus 38 ~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~------~~~lW~~y~~~lE~~~~~~e~ 111 (406)
+++.+...|+++... .. ..+..+.|...|++|+...+. ....|...+..+ ...+++++
T Consensus 32 ~~~~A~~~~~~a~~~--------------~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~-~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQAATI--------------YR-LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCF-KSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHHHHH--------------HH-HTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHH
T ss_pred cHHHHHHHHHHHHHH--------------HH-HcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHCCCHHH
Confidence 378899999998432 12 234678999999999986532 246777777644 45789999
Q ss_pred HHHHHHHHHhCccc--cH----HHHHHHHHHHHHHHHHHHhccccchhh-hhHHHHHHHHHHHHHHHhhhhcCCchHHHH
Q 015472 112 ISTVFEKSLLCAFS--TF----EEYLDLFLTRIDGLRRRILFSGEVEGV-LDYSLIRETFQRASDYLSEQMKNTDGLLRL 184 (406)
Q Consensus 112 ar~if~~al~~~~~--~~----~~~~~l~~~~~~~l~Rr~~~~~~~e~~-~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l 184 (406)
|...|++|+...+. .. ..+..+...+ ... ++++.+...|++|+...+.. ........+
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~--------------~~~lg~~~~A~~~~~~Al~~~~~~-~~~~~~~~~ 160 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEIL--------------ENDLHDYAKAIDCYELAGEWYAQD-QSVALSNKC 160 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------HHTTCCHHHHHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--------------HHhhcCHHHHHHHHHHHHHHHHhC-CChHHHHHH
Confidence 99999999985432 11 1122221111 111 45667888999998875321 111112457
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhccchH-------HHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChH---
Q 015472 185 YAYWAHLEQSMGKDMVSARGVWERLLKISGAML-------EAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSE--- 254 (406)
Q Consensus 185 ~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~-------~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~--- 254 (406)
+..++.+...+| +++.|..+|++++...|++. ..|...+......|+++.|...|++++.. .|.-...
T Consensus 161 ~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~~~~~~~ 238 (292)
T 1qqe_A 161 FIKCADLKALDG-QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE-DPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------H
T ss_pred HHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCCCcHHH
Confidence 888899999999 99999999999999876543 26777777888899999999999999973 3321111
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHhh
Q 015472 255 DICHAWLRFEREYGTLEDFDHSVQKV 280 (406)
Q Consensus 255 ~i~~~~i~fE~~~G~~e~~~~a~~k~ 280 (406)
.++...+... ..|+.+.++.|+...
T Consensus 239 ~~l~~l~~~~-~~~~~~~~~~A~~~~ 263 (292)
T 1qqe_A 239 NFLKSLIDAV-NEGDSEQLSEHCKEF 263 (292)
T ss_dssp HHHHHHHHHH-HTTCTTTHHHHHHHH
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHh
Confidence 1222222211 236666677666543
No 104
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.61 E-value=1e-06 Score=70.87 Aligned_cols=101 Identities=11% Similarity=-0.033 Sum_probs=90.2
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHH
Q 015472 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLL 100 (406)
Q Consensus 21 ~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~ 100 (406)
.....|...+......|+++.+...|++++..+|.++.+|...+..+... +..+.|...|++|+...|.....|..++.
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL-MSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34667888888888999999999999999999999999999999877764 47889999999999999999999999998
Q ss_pred HHHHccCCHHHHHHHHHHHHhCc
Q 015472 101 SLERSRASEEEISTVFEKSLLCA 123 (406)
Q Consensus 101 ~lE~~~~~~e~ar~if~~al~~~ 123 (406)
.+ ...+++++|...|++++...
T Consensus 81 ~~-~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 81 AQ-IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HH-HHTTCHHHHHHHHHHHHHHH
T ss_pred HH-HHHhCHHHHHHHHHHHHHhC
Confidence 55 45899999999999999876
No 105
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.61 E-value=4.5e-06 Score=73.84 Aligned_cols=169 Identities=8% Similarity=-0.025 Sum_probs=109.4
Q ss_pred CHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHccCCHHHHHHHHHHH
Q 015472 56 SSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVR----------------SLLSLERSRASEEEISTVFEKS 119 (406)
Q Consensus 56 ~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~----------------y~~~lE~~~~~~e~ar~if~~a 119 (406)
+++.++..+.-+... +..+.|...|++|+...|.+..+|.. ++..+ ...+++++|...|+++
T Consensus 3 ~~~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~-~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 3 SVDEMLQKVSAAIEA-GQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAY-KKNRNYDKAYLFYKEL 80 (208)
T ss_dssp CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHH-HHCCCHHHHHHHHHHH
Confidence 455566666555443 46889999999999999998888877 66644 4578999999999999
Q ss_pred HhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcC-CC
Q 015472 120 LLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMG-KD 198 (406)
Q Consensus 120 l~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~-~d 198 (406)
+...|.....++.+...+. ..+++..+...|++++.. .|.+...|..++.+....+ ..
T Consensus 81 l~~~p~~~~~~~~lg~~~~--------------~~g~~~~A~~~~~~al~~-------~P~~~~a~~~lg~~~~~~~~~~ 139 (208)
T 3urz_A 81 LQKAPNNVDCLEACAEMQV--------------CRGQEKDALRMYEKILQL-------EADNLAANIFLGNYYYLTAEQE 139 (208)
T ss_dssp HHHCTTCHHHHHHHHHHHH--------------HHTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHH--------------HcCCHHHHHHHHHHHHHc-------CCCCHHHHHHHHHHHHHHhHHH
Confidence 9987776555554443221 114556677777777765 3445667777777665544 13
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccC
Q 015472 199 MVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFT 249 (406)
Q Consensus 199 ~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~ 249 (406)
...+...|.+++...|.. ..|..........|+++.|...|++|+.. .|
T Consensus 140 ~~~~~~~~~~~~~~~~~~-~a~~~~g~~~~~~~~~~~A~~~~~~al~l-~P 188 (208)
T 3urz_A 140 KKKLETDYKKLSSPTKMQ-YARYRDGLSKLFTTRYEKARNSLQKVILR-FP 188 (208)
T ss_dssp HHHHHHHHC---CCCHHH-HHHHHHHHHHHHHHTHHHHHHHHHHHTTT-SC
T ss_pred HHHHHHHHHHHhCCCchh-HHHHHHHHHHHHccCHHHHHHHHHHHHHh-CC
Confidence 445566666665433322 23333333444568899999999999973 44
No 106
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.60 E-value=5.6e-06 Score=79.96 Aligned_cols=233 Identities=12% Similarity=0.040 Sum_probs=145.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhc---CCC---CHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCC-------HHHH
Q 015472 29 YLKYEQSSGDPGRVQLLYERAITD---FPV---SSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV-------GELW 95 (406)
Q Consensus 29 Yi~~E~~~g~~~~~~~lyEral~~---~P~---~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~-------~~lW 95 (406)
.+.+....|+++.|...|++|+.. .|. ...+|...+...... +..+.|...|++|+..++.. ...+
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYM-KQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 344556789999999999999987 233 346677777666554 47889999999999876433 2355
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCccc--cHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhh
Q 015472 96 VRSLLSLERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSE 173 (406)
Q Consensus 96 ~~y~~~lE~~~~~~e~ar~if~~al~~~~~--~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~ 173 (406)
...+..+ ...+++++|...|++|+...+. ........+. ..+.+... .+++..+...|++++.....
T Consensus 188 ~~lg~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~lg~~y~~---------~g~~~~A~~~~~~al~~~~~ 256 (383)
T 3ulq_A 188 SLFATNF-LDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLY-NIGLCKNS---------QSQYEDAIPYFKRAIAVFEE 256 (383)
T ss_dssp HHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHH---------TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHH-HHHHHHHH---------CCCHHHHHHHHHHHHHHHHh
Confidence 5555533 4579999999999999985331 1111111111 11111111 25667788888888886533
Q ss_pred hhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-----hHHHHHHHHHHHHHccc---HHHHHHHHHHHHh
Q 015472 174 QMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA-----MLEAWQSYISMEIELDH---INEARSIYKRCYS 245 (406)
Q Consensus 174 ~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~-----~~~lW~~y~~~E~~~g~---~~~ar~l~~ral~ 245 (406)
. ...+.....+...+.+....| +++.|...|++++...+. ....+.....+....|+ +..|..+++++-.
T Consensus 257 ~-~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~ 334 (383)
T 3ulq_A 257 S-NILPSLPQAYFLITQIHYKLG-KIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML 334 (383)
T ss_dssp T-TCGGGHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC
T ss_pred h-ccchhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC
Confidence 2 111445677888899999999 999999999999988432 22233445555566677 6666666666521
Q ss_pred cccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHh
Q 015472 246 KRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (406)
Q Consensus 246 ~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~a~~k 279 (406)
.+....++......-...|+.+......++
T Consensus 335 ----~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 364 (383)
T 3ulq_A 335 ----YADLEDFAIDVAKYYHERKNFQKASAYFLK 364 (383)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 111223444444455566776554333333
No 107
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.60 E-value=5.4e-07 Score=84.06 Aligned_cols=197 Identities=7% Similarity=-0.073 Sum_probs=140.0
Q ss_pred hcCChhHHHHHHHHHHhcCCCCHHHHHHH-------HHHHHHhcchhhhHHHHHHHHHHhCCCC----------------
Q 015472 35 SSGDPGRVQLLYERAITDFPVSSDLWLDY-------TQYLDKTLKVGNVVRDVYSRATKNCPWV---------------- 91 (406)
Q Consensus 35 ~~g~~~~~~~lyEral~~~P~~~~lW~~Y-------~~~l~~~~~~~e~a~~vyerA~~~~P~~---------------- 91 (406)
..+++..+...|.+++..+|...+.|+.+ ...+.... ....+...+.+++..-|..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~-r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAW-YSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHH-HTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHH-HHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 36899999999999999999999999999 55555433 3456777888888754421
Q ss_pred -----HHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHH
Q 015472 92 -----GELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQR 166 (406)
Q Consensus 92 -----~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~ 166 (406)
..++..|+..+ ...+++++|..+|..++...|... ..+.+.. + ++ ...++..+...|+.
T Consensus 97 ~v~~r~dl~LayA~~L-~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~--l-~~-----------~~~r~~dA~~~l~~ 160 (282)
T 4f3v_A 97 PVTSPLAITMGFAACE-AAQGNYADAMEALEAAPVAGSEHL-VAWMKAV--V-YG-----------AAERWTDVIDQVKS 160 (282)
T ss_dssp ECSSHHHHHHHHHHHH-HHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHH--H-HH-----------HTTCHHHHHHHHTT
T ss_pred ccCCHhHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCCchH-HHHHHHH--H-HH-----------HcCCHHHHHHHHHH
Confidence 46888898755 458999999999998887666433 2111111 0 00 01333444444443
Q ss_pred HHHHHhhhhcCCchH--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--cc-hHHHHHHHHHHHHHcccHHHHHHHHH
Q 015472 167 ASDYLSEQMKNTDGL--LRLYAYWAHLEQSMGKDMVSARGVWERLLKIS--GA-MLEAWQSYISMEIELDHINEARSIYK 241 (406)
Q Consensus 167 a~~~l~~~~~~~~~~--~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~--~~-~~~lW~~y~~~E~~~g~~~~ar~l~~ 241 (406)
+.. ..++. ..++...+.....+| +++.|...|++++... |. .++.++..+.....+|+.+.|+.+|+
T Consensus 161 a~~-------~~d~~~~~~a~~~LG~al~~LG-~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~ 232 (282)
T 4f3v_A 161 AGK-------WPDKFLAGAAGVAHGVAAANLA-LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLE 232 (282)
T ss_dssp GGG-------CSCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hhc-------cCCcccHHHHHHHHHHHHHHCC-CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 322 11221 347778888899999 9999999999999653 55 67899999999999999999999999
Q ss_pred HHHhcccCCCChHHHHHHH
Q 015472 242 RCYSKRFTGTGSEDICHAW 260 (406)
Q Consensus 242 ral~~~~~~~~~~~i~~~~ 260 (406)
+++.. -| . ..++.+.
T Consensus 233 ~a~a~-~P--~-~~~~~aL 247 (282)
T 4f3v_A 233 WLQTT-HP--E-PKVAAAL 247 (282)
T ss_dssp HHHHH-SC--C-HHHHHHH
T ss_pred HHHhc-CC--c-HHHHHHH
Confidence 99984 33 3 5555554
No 108
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.59 E-value=8.5e-07 Score=72.29 Aligned_cols=121 Identities=14% Similarity=-0.000 Sum_probs=80.7
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccH
Q 015472 48 RAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTF 127 (406)
Q Consensus 48 ral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~ 127 (406)
|....+|...+.|...+..+...+ ..+.|...|++|+...|.+..+|...+..+ ...+++++|...|++++...|.
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~p~-- 79 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKG-DYPTAMRHYNEAVKRDPENAILYSNRAACL-TKLMEFQRALDDCDTCIRLDSK-- 79 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHhhHH-HhhccHHHHHHHHHHHHHhhhh--
Confidence 344456766777777776555443 567788888888888887777777777644 3466677776666666654332
Q ss_pred HHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 015472 128 EEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWE 207 (406)
Q Consensus 128 ~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife 207 (406)
....|...+.....+| +++.|...|+
T Consensus 80 -----------------------------------------------------~~~a~~~lg~~~~~~~-~~~~A~~~~~ 105 (126)
T 4gco_A 80 -----------------------------------------------------FIKGYIRKAACLVAMR-EWSKAQRAYE 105 (126)
T ss_dssp -----------------------------------------------------CHHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred -----------------------------------------------------hhHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence 2334555566666777 8888888888
Q ss_pred HHHHhccchHHHHHHHHHH
Q 015472 208 RLLKISGAMLEAWQSYISM 226 (406)
Q Consensus 208 ~al~~~~~~~~lW~~y~~~ 226 (406)
++++.+|++.+++..+..+
T Consensus 106 ~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 106 DALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHCcCCHHHHHHHHHh
Confidence 8888888888877666543
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.59 E-value=5.2e-07 Score=77.57 Aligned_cols=167 Identities=11% Similarity=-0.011 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015472 24 QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLE 103 (406)
Q Consensus 24 ~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE 103 (406)
+.+...+......|+++.+...|++++..+|.++..|..++..+...+ ..+.|...|++++...| ...++...+....
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g-~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETK-QFELAQELLATIPLEYQ-DNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTT-CHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCC-CHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence 346666666778899999999999999999999999999998887654 67899999999999999 7665544432111
Q ss_pred HccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHH
Q 015472 104 RSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLR 183 (406)
Q Consensus 104 ~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~ 183 (406)
........+...|++++...|.....++.+..... ..++++.+...|++++..- |. .....
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~--------------~~g~~~~A~~~~~~~l~~~-p~----~~~~~ 145 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYN--------------QVGRDEEALELLWNILKVN-LG----AQDGE 145 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHH--------------HTTCHHHHHHHHHHHHTTC-TT----TTTTH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHH--------------HcccHHHHHHHHHHHHHhC-cc----cChHH
Confidence 11122234688999999987766555544432221 1145567777777776642 10 11234
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 015472 184 LYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (406)
Q Consensus 184 l~~~~a~~e~~~~~d~~~Ar~ife~al~~ 212 (406)
.|..++.+....| +.+.|...|.+++..
T Consensus 146 a~~~l~~~~~~~g-~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 146 VKKTFMDILSALG-QGNAIASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCcHHHHHHHHHHH
Confidence 7888888888999 899999999999864
No 110
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.58 E-value=2.7e-06 Score=66.32 Aligned_cols=104 Identities=16% Similarity=0.040 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015472 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (406)
Q Consensus 22 ~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~ 101 (406)
....|...+......|+++.+...|++++..+|.++.+|..++..+...+ ..+.+...|++++...|....+|..++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKG-DYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 35577888888888999999999999999999999999999998776544 68899999999999999999999999875
Q ss_pred HHHccCCHHHHHHHHHHHHhCccccH
Q 015472 102 LERSRASEEEISTVFEKSLLCAFSTF 127 (406)
Q Consensus 102 lE~~~~~~e~ar~if~~al~~~~~~~ 127 (406)
+. ..+++++|...|++++...|...
T Consensus 82 ~~-~~~~~~~A~~~~~~~~~~~~~~~ 106 (118)
T 1elw_A 82 LE-FLNRFEEAKRTYEEGLKHEANNP 106 (118)
T ss_dssp HH-HTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HH-HHhhHHHHHHHHHHHHHcCCCCH
Confidence 54 58999999999999999877543
No 111
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.56 E-value=3.1e-07 Score=77.10 Aligned_cols=79 Identities=1% Similarity=-0.165 Sum_probs=57.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCc
Q 015472 44 LLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA 123 (406)
Q Consensus 44 ~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~ 123 (406)
..|++++...|.+...|..++..+...+ ..+.|...|++|+...|.+..+|..++..+ ...+++++|...|++++...
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSG-XYEDAHXVFQALCVLDHYDSRFFLGLGACR-QAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHS
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCcccHHHHHHHHHHH-HHHhhHHHHHHHHHHHHhcC
Confidence 4577788888888888888777666543 567788888888888888888887777644 34677777777777766644
Q ss_pred c
Q 015472 124 F 124 (406)
Q Consensus 124 ~ 124 (406)
|
T Consensus 86 p 86 (148)
T 2vgx_A 86 I 86 (148)
T ss_dssp T
T ss_pred C
Confidence 3
No 112
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.55 E-value=1.1e-05 Score=67.17 Aligned_cols=105 Identities=10% Similarity=-0.067 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015472 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (406)
Q Consensus 22 ~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~ 101 (406)
....|...+......|+++.+...|++++..+|.+..+|..++..+... +..+.+...|++|+...|....+|..++..
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT-ECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 4557777788888899999999999999999999999999999877654 468899999999999999999999999875
Q ss_pred HHHccCCHHHHHHHHHHHHhCccccHH
Q 015472 102 LERSRASEEEISTVFEKSLLCAFSTFE 128 (406)
Q Consensus 102 lE~~~~~~e~ar~if~~al~~~~~~~~ 128 (406)
+ ...+++++|..+|++++...|....
T Consensus 91 ~-~~~~~~~~A~~~~~~a~~~~p~~~~ 116 (166)
T 1a17_A 91 N-MALGKFRAALRDYETVVKVKPHDKD 116 (166)
T ss_dssp H-HHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred H-HHhccHHHHHHHHHHHHHhCCCCHH
Confidence 5 4589999999999999997665433
No 113
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.54 E-value=4.6e-07 Score=75.07 Aligned_cols=79 Identities=4% Similarity=-0.166 Sum_probs=52.9
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCc
Q 015472 44 LLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA 123 (406)
Q Consensus 44 ~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~ 123 (406)
..|++++...|.+...|..++..+...+ ..+.|...|++++...|....+|..++..+ ...+++++|...|++++...
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAG-KWDDAQKIFQALCMLDHYDARYFLGLGACR-QSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHhCCccHHHHHHHHHHH-HHHhhHHHHHHHHHHHHhcC
Confidence 4667777777777777777776665543 567788888888888887777777777644 34677777777777766544
Q ss_pred c
Q 015472 124 F 124 (406)
Q Consensus 124 ~ 124 (406)
|
T Consensus 83 p 83 (142)
T 2xcb_A 83 I 83 (142)
T ss_dssp T
T ss_pred C
Confidence 3
No 114
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.53 E-value=9.2e-07 Score=71.47 Aligned_cols=99 Identities=10% Similarity=-0.028 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015472 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER 104 (406)
Q Consensus 25 ~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~ 104 (406)
.|...+......|+++.+...|+++|..+|.++..|...+..+...+ ..+.|...|++|+...|.....|..++..+ .
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~P~~~~~~~~la~~~-~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENE-KDGLAIIALNHARMLDPKDIAVHAALAVSH-T 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-H
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-H
Confidence 46666777778999999999999999999999999999998877654 678999999999999999999999988755 4
Q ss_pred ccCCHHHHHHHHHHHHhCccc
Q 015472 105 SRASEEEISTVFEKSLLCAFS 125 (406)
Q Consensus 105 ~~~~~e~ar~if~~al~~~~~ 125 (406)
..+++++|...|++++...|.
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHC----
T ss_pred HcCCHHHHHHHHHHHHHhCcC
Confidence 578899999999999987653
No 115
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.51 E-value=6.5e-06 Score=65.26 Aligned_cols=106 Identities=15% Similarity=0.016 Sum_probs=92.4
Q ss_pred hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHH
Q 015472 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSL 99 (406)
Q Consensus 20 ~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~ 99 (406)
+.....|...+......|+++.+...|++++...|.++.+|..++..+... +..+.+...|++++...|....+|..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKL-GNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-hchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 456678888888888899999999999999999999999999999887654 4688999999999999999999999988
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCccccH
Q 015472 100 LSLERSRASEEEISTVFEKSLLCAFSTF 127 (406)
Q Consensus 100 ~~lE~~~~~~e~ar~if~~al~~~~~~~ 127 (406)
..+ ...+++++|...|++++...|...
T Consensus 88 ~~~-~~~~~~~~A~~~~~~~~~~~p~~~ 114 (131)
T 2vyi_A 88 LAL-SSLNKHVEAVAYYKKALELDPDNE 114 (131)
T ss_dssp HHH-HHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHH-HHhCCHHHHHHHHHHHHhcCccch
Confidence 754 458999999999999999766543
No 116
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.51 E-value=3.6e-06 Score=66.88 Aligned_cols=115 Identities=15% Similarity=0.143 Sum_probs=97.3
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHH
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyer 83 (406)
+...|+.++...| .....|..++......|+++.+..+|++++...|.+..+|..++..+... +..+.+..+|++
T Consensus 20 A~~~~~~~~~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~ 94 (136)
T 2fo7_A 20 AIEYYQKALELDP----RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ-GDYDEAIEYYQK 94 (136)
T ss_dssp HHHHHHHHHHHCT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC----cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh-cCHHHHHHHHHH
Confidence 5567888887765 24667888888888889999999999999999999999999998877654 467899999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCcc
Q 015472 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAF 124 (406)
Q Consensus 84 A~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~ 124 (406)
++...|....+|..++..+ ...+++++|...|.+++...|
T Consensus 95 ~~~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 95 ALELDPRSAEAWYNLGNAY-YKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HHHHCTTCHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHST
T ss_pred HHHhCCCChHHHHHHHHHH-HHHccHHHHHHHHHHHHccCC
Confidence 9999999999999988744 468999999999999987544
No 117
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.51 E-value=3.1e-06 Score=67.69 Aligned_cols=104 Identities=14% Similarity=0.029 Sum_probs=92.3
Q ss_pred hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHH
Q 015472 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSL 99 (406)
Q Consensus 20 ~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~ 99 (406)
+.....|...+......|+++.+...|++++..+|.+..+|..++..+... +..+.+...|++|+...|....+|..++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL-LEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTT-TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 557788999999999999999999999999999999999999999877654 4688999999999999999999999998
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCccc
Q 015472 100 LSLERSRASEEEISTVFEKSLLCAFS 125 (406)
Q Consensus 100 ~~lE~~~~~~e~ar~if~~al~~~~~ 125 (406)
..+ ...+++++|...|++++...+.
T Consensus 92 ~~~-~~~~~~~~A~~~~~~~~~~~p~ 116 (133)
T 2lni_A 92 AAL-EAMKDYTKAMDVYQKALDLDSS 116 (133)
T ss_dssp HHH-HHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHH-HHHhhHHHHHHHHHHHHHhCCC
Confidence 755 4589999999999999987664
No 118
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.51 E-value=2.5e-05 Score=74.77 Aligned_cols=224 Identities=12% Similarity=-0.016 Sum_probs=131.1
Q ss_pred hhHHHHHHHhcCCCCChh-hHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHhcchhhh
Q 015472 4 ARAHLEEQISRQDLSDSE-KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDL------WLDYTQYLDKTLKVGNV 76 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~-~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~l------W~~Y~~~l~~~~~~~e~ 76 (406)
++..++.+|...+..++. ....+..........|+++.+...|++++...|...+. ....+..... .+..+.
T Consensus 33 A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~G~~~~ 111 (373)
T 1hz4_A 33 AERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA-QGFLQT 111 (373)
T ss_dssp HHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-CCCHHH
Confidence 456778888776533321 12244444555666789999999999998876543322 2233333333 346788
Q ss_pred HHHHHHHHHHhCC--------CCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccc-----cHHHHHHHHHHHHHHHHH
Q 015472 77 VRDVYSRATKNCP--------WVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS-----TFEEYLDLFLTRIDGLRR 143 (406)
Q Consensus 77 a~~vyerA~~~~P--------~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~-----~~~~~~~l~~~~~~~l~R 143 (406)
+...|++|+...+ ....++...+. +....+++++|...|++++...+. ....+..+ ..+ ..
T Consensus 112 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l--a~~---~~ 185 (373)
T 1hz4_A 112 AWETQEKAFQLINEQHLEQLPMHEFLVRIRAQ-LLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML--IQC---SL 185 (373)
T ss_dssp HHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH--HHH---HH
T ss_pred HHHHHHHHHHHHHHhccccCcHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH--HHH---HH
Confidence 8889998887542 22334444444 223478899999999998874321 11111111 111 00
Q ss_pred HHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHhccch----H
Q 015472 144 RILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLY--AYWAHLEQSMGKDMVSARGVWERLLKISGAM----L 217 (406)
Q Consensus 144 r~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~--~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~----~ 217 (406)
..+++..+...+++++...... . .+...... ...+.+....| +++.|+..+++++...+.. .
T Consensus 186 ---------~~g~~~~A~~~l~~a~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 186 ---------ARGDLDNARSQLNRLENLLGNG-K-YHSDWISNANKVRVIYWQMTG-DKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp ---------HHTCHHHHHHHHHHHHHHHTTS-C-CCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred ---------HcCCHHHHHHHHHHHHHHHhcc-C-cchhHHHHHHHHHHHHHHHCC-CHHHHHHHHHhCCCCCCCcchhhH
Confidence 1145556777777776653211 0 11111111 12223345677 8999999998888764431 3
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 218 EAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 218 ~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
..+..++......|+++.|..++++++..
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35677788888889999999999988764
No 119
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.49 E-value=1.8e-06 Score=70.04 Aligned_cols=102 Identities=13% Similarity=-0.087 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHH
Q 015472 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLL 100 (406)
Q Consensus 21 ~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~ 100 (406)
.....|...+......|+++.+...|++++..+|.++.+|..++..+... +..+.|...|++|+...|....+|..++.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM-QQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 35678888899889999999999999999999999999999999887764 46889999999999999999999999998
Q ss_pred HHHHccCCHHHHHHHHHHHHhCcc
Q 015472 101 SLERSRASEEEISTVFEKSLLCAF 124 (406)
Q Consensus 101 ~lE~~~~~~e~ar~if~~al~~~~ 124 (406)
.+ ...+++++|...|.+++...|
T Consensus 86 ~~-~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 86 CQ-LEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HH-HHTTCHHHHHHHHHHHHHHHH
T ss_pred HH-HHHhhHHHHHHHHHHHHHHCh
Confidence 55 458999999999999998654
No 120
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.48 E-value=9.5e-07 Score=68.39 Aligned_cols=102 Identities=19% Similarity=0.161 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCC--CHHHHHHHH
Q 015472 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPW--VGELWVRSL 99 (406)
Q Consensus 22 ~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~--~~~lW~~y~ 99 (406)
....|...+......|+++.+...|++++...|.+..+|..++..+... +..+.|...|++++...|. ...+|..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNL-ERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 4556777778788899999999999999999999999999999887754 4688999999999999999 999999998
Q ss_pred HHHHHcc-CCHHHHHHHHHHHHhCccc
Q 015472 100 LSLERSR-ASEEEISTVFEKSLLCAFS 125 (406)
Q Consensus 100 ~~lE~~~-~~~e~ar~if~~al~~~~~ 125 (406)
..+ ... +++++|...|.+++...|+
T Consensus 84 ~~~-~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 84 DAL-RYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHH-TTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHH-HHHhCCHHHHHHHHHHHhhcccC
Confidence 744 568 9999999999999986553
No 121
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=98.48 E-value=5.4e-06 Score=70.44 Aligned_cols=110 Identities=16% Similarity=0.305 Sum_probs=84.3
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhc---CCh-hHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHh
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSS---GDP-GRVQLLYERAITDFPVS---------SDLWLDYTQYLDKT 70 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~---g~~-~~~~~lyEral~~~P~~---------~~lW~~Y~~~l~~~ 70 (406)
.|..||..|.... + .+.++.|..||.|-..+ |.. .....++|||+..+..+ ..+|+.|+.++
T Consensus 2 ~r~~fE~~i~~~~-g-dDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~--- 76 (164)
T 2wvi_A 2 QKRAFEYEIRFYT-G-NDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC--- 76 (164)
T ss_dssp CTHHHHHHCCCCC-S-SCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHhhcC-C-CCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---
Confidence 4788999997433 3 24589999999998663 333 34678999999987543 67999999874
Q ss_pred cchhhhHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCc
Q 015472 71 LKVGNVVRDVYSRATKNC--PWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA 123 (406)
Q Consensus 71 ~~~~e~a~~vyerA~~~~--P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~ 123 (406)
+....+|.-...+- -....+|..|+.++|. .+++..|..||..++...
T Consensus 77 ----~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~-~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 77 ----NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEA-RENFRKADAIFQEGIQQK 126 (164)
T ss_dssp ----SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTT
T ss_pred ----CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcC
Confidence 12567888877644 4567999999998885 789999999999999964
No 122
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.46 E-value=1.2e-05 Score=71.73 Aligned_cols=176 Identities=11% Similarity=-0.046 Sum_probs=115.2
Q ss_pred hhhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHH---HHHHHHHHHHH----------
Q 015472 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD---LWLDYTQYLDK---------- 69 (406)
Q Consensus 3 ~~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~---lW~~Y~~~l~~---------- 69 (406)
.+...|+..|...|. ++.....|...+......|+++.|...|++++..+|.++. .|...+.....
T Consensus 22 ~A~~~~~~~~~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~ 100 (225)
T 2yhc_A 22 QAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFF 100 (225)
T ss_dssp HHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 356788999988763 2334457777777778899999999999999999999875 34433332221
Q ss_pred -------hcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHH
Q 015472 70 -------TLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLR 142 (406)
Q Consensus 70 -------~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~ 142 (406)
..+..+.|...|++++...|.+...|..+.. +.. +...+.. ..+. +..+ +.
T Consensus 101 ~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~-l~~-------~~~~~~~----------~~~~--~a~~-~~- 158 (225)
T 2yhc_A 101 GVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKR-LVF-------LKDRLAK----------YEYS--VAEY-YT- 158 (225)
T ss_dssp -------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHH-HHH-------HHHHHHH----------HHHH--HHHH-HH-
T ss_pred ccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHH-HHH-------HHHHHHH----------HHHH--HHHH-HH-
Confidence 1235788999999999999998877755443 111 0000000 0000 0000 00
Q ss_pred HHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccch
Q 015472 143 RRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM 216 (406)
Q Consensus 143 Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~ 216 (406)
..+++..+...|+++++..+. .+.....+...+.....+| +++.|+..|+++....|++
T Consensus 159 ----------~~~~~~~A~~~~~~~l~~~p~----~~~~~~a~~~l~~~~~~~g-~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 159 ----------ERGAWVAVVNRVEGMLRDYPD----TQATRDALPLMENAYRQMQ-MNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp ----------HHTCHHHHHHHHHHHHHHSTT----SHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCCSCC
T ss_pred ----------HcCcHHHHHHHHHHHHHHCcC----CCccHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhhCCCc
Confidence 114556677778887765321 1223357778888888999 9999999999998887764
No 123
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.45 E-value=9.9e-06 Score=63.58 Aligned_cols=104 Identities=15% Similarity=0.145 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015472 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSL 102 (406)
Q Consensus 23 ~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~l 102 (406)
...|...+......|+++.+..+|++++..+|.+..+|..++..+... +..+.+..+|++++...|....+|..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 567888888888899999999999999999999999999999877764 4688999999999999999999999988755
Q ss_pred HHccCCHHHHHHHHHHHHhCccccHH
Q 015472 103 ERSRASEEEISTVFEKSLLCAFSTFE 128 (406)
Q Consensus 103 E~~~~~~e~ar~if~~al~~~~~~~~ 128 (406)
...+++++|..+|++++...|....
T Consensus 88 -~~~~~~~~A~~~~~~~~~~~~~~~~ 112 (125)
T 1na0_A 88 -YKQGDYDEAIEYYQKALELDPNNAE 112 (125)
T ss_dssp -HHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred -HHhcCHHHHHHHHHHHHHhCCCcHH
Confidence 4589999999999999997665443
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.45 E-value=1.2e-05 Score=66.93 Aligned_cols=129 Identities=13% Similarity=-0.000 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHH
Q 015472 59 LWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRI 138 (406)
Q Consensus 59 lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~ 138 (406)
.|...+...... ++.+.|...|++|+...|....+|..++..+ ...+++++|...|.+++...|
T Consensus 15 ~~~~~a~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~-~~~~~~~~A~~~~~~a~~~~~-------------- 78 (166)
T 1a17_A 15 ELKTQANDYFKA-KDYENAIKFYSQAIELNPSNAIYYGNRSLAY-LRTECYGYALGDATRAIELDK-------------- 78 (166)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCT--------------
T ss_pred HHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCc--------------
Confidence 344444433332 2455666666666666666666666655433 235555555555555444322
Q ss_pred HHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHH
Q 015472 139 DGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE 218 (406)
Q Consensus 139 ~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~ 218 (406)
....+|..++.+....| +++.|..+|++++...|.+..
T Consensus 79 -----------------------------------------~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~p~~~~ 116 (166)
T 1a17_A 79 -----------------------------------------KYIKGYYRRAASNMALG-KFRAALRDYETVVKVKPHDKD 116 (166)
T ss_dssp -----------------------------------------TCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHH
T ss_pred -----------------------------------------ccHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCCCCHH
Confidence 22345566666677788 899999999999999998888
Q ss_pred HHHHHH--HHHHHcccHHHHHHHHHHHHh
Q 015472 219 AWQSYI--SMEIELDHINEARSIYKRCYS 245 (406)
Q Consensus 219 lW~~y~--~~E~~~g~~~~ar~l~~ral~ 245 (406)
+|..+. ......|+++.|..++.++..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 117 AKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 774444 346677899999999888765
No 125
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.43 E-value=0.00039 Score=69.50 Aligned_cols=83 Identities=6% Similarity=-0.136 Sum_probs=40.3
Q ss_pred cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---cchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---cCCH
Q 015472 36 SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKT---LKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERS---RASE 109 (406)
Q Consensus 36 ~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~---~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~---~~~~ 109 (406)
.++++.+...|++++.. .++..+...+.....- .++.+.+...|++|+.. .....+..++..+... .+++
T Consensus 92 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~ 167 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDY 167 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH
Confidence 45556666666666543 3555555555444321 12345566666665543 2234444444322211 3455
Q ss_pred HHHHHHHHHHHhC
Q 015472 110 EEISTVFEKSLLC 122 (406)
Q Consensus 110 e~ar~if~~al~~ 122 (406)
++|...|++++..
T Consensus 168 ~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 168 VMAREWYSKAAEQ 180 (490)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC
Confidence 5555666555554
No 126
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.42 E-value=2.3e-06 Score=72.36 Aligned_cols=84 Identities=8% Similarity=-0.051 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHH
Q 015472 155 LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHIN 234 (406)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~ 234 (406)
+++..+...|++++.. .|.+...|...+......| +++.|...|++++...|+++..|...+......|+++
T Consensus 50 g~~~eA~~~~~~al~~-------~P~~~~~~~~lg~~~~~~g-~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~ 121 (151)
T 3gyz_A 50 GRIEEAEVFFRFLCIY-------DFYNVDYIMGLAAIYQIKE-QFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPL 121 (151)
T ss_dssp TCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHc-cHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 4566777888887765 3556779999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 015472 235 EARSIYKRCYSK 246 (406)
Q Consensus 235 ~ar~l~~ral~~ 246 (406)
.|...|++++..
T Consensus 122 eA~~~~~~al~l 133 (151)
T 3gyz_A 122 KAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999984
No 127
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=98.42 E-value=5.9e-06 Score=69.25 Aligned_cols=110 Identities=13% Similarity=0.217 Sum_probs=87.7
Q ss_pred hhhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhc---CChhHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHh
Q 015472 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSS---GDPGRVQLLYERAITDFPV---------SSDLWLDYTQYLDKT 70 (406)
Q Consensus 3 ~~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~---g~~~~~~~lyEral~~~P~---------~~~lW~~Y~~~l~~~ 70 (406)
..|..||..|...... +.++.|..||.|-..+ |. .....++|||+..+.. ...+|+.|+.++
T Consensus 8 ~~~~~fE~~i~~y~gd--DPL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~--- 81 (152)
T 4a1g_A 8 NVLQMLEAHMQSYKGN--DPLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN--- 81 (152)
T ss_dssp HHHHHHHHHTTSCCSS--CHHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB---
T ss_pred HHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc---
Confidence 4678899999996533 3589999999998775 43 3478999999988643 367999999874
Q ss_pred cchhhhHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCc
Q 015472 71 LKVGNVVRDVYSRATKNC--PWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA 123 (406)
Q Consensus 71 ~~~~e~a~~vyerA~~~~--P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~ 123 (406)
+....+|.-..++- -....+|..|+..+|. .+++.+|..||..+++..
T Consensus 82 ----~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~-~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 82 ----SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEA-QGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp ----SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTT
T ss_pred ----CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcC
Confidence 22678888887654 4567999999998885 799999999999999964
No 128
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.41 E-value=9.6e-06 Score=77.96 Aligned_cols=234 Identities=9% Similarity=-0.006 Sum_probs=148.3
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc-hhhhHHHHH
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSG-DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLK-VGNVVRDVY 81 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g-~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~-~~e~a~~vy 81 (406)
+-..++.+|..+| +++.+|..-.......| .++.+...++.+|..+|.+..+|....-.+....+ ..+....++
T Consensus 73 AL~lt~~~L~~nP----~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 73 ALELTEIIVRMNP----AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp HHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHHHHHHhCc----hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 3456777888776 57889988777777788 58999999999999999999999999877776423 567889999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHccCCHH--------HHHHHHHHHHhCccc--cHHHHHHHHHHHHHHHHHHHhccccc
Q 015472 82 SRATKNCPWVGELWVRSLLSLERSRASEE--------EISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEV 151 (406)
Q Consensus 82 erA~~~~P~~~~lW~~y~~~lE~~~~~~e--------~ar~if~~al~~~~~--~~~~~~~l~~~~~~~l~Rr~~~~~~~ 151 (406)
++++...|.+...|....-.+.. .+..+ ++...+.+++...+. ..|.+....+.. .. . .
T Consensus 149 ~k~L~~dpkNy~AW~~R~wvl~~-l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~-------l~-~-~- 217 (349)
T 3q7a_A 149 HGSLLPDPKNYHTWAYLHWLYSH-FSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVS-------RP-G-A- 217 (349)
T ss_dssp HHHTSSCTTCHHHHHHHHHHHHH-HHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT-------ST-T-C-
T ss_pred HHHHHhCCCCHHHHHHHHHHHHH-hccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-------cc-c-c-
Confidence 99999999999999876644432 22233 677788888886654 344433222110 00 0 0
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHH----------------HHHHHHHHHHHh---
Q 015472 152 EGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMV----------------SARGVWERLLKI--- 212 (406)
Q Consensus 152 e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~----------------~Ar~ife~al~~--- 212 (406)
. .....++++++++...+...|.+...|.+..-+....|.... .--.+.+-|+..
T Consensus 218 ~------~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (349)
T 3q7a_A 218 E------TSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSD 291 (349)
T ss_dssp C------CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-
T ss_pred c------cchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhc
Confidence 0 012345555555555554466777899876666666553200 001222333322
Q ss_pred c------cchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHH
Q 015472 213 S------GAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAW 260 (406)
Q Consensus 213 ~------~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~ 260 (406)
. +.+.-++--.++.....|+.++|..+|+....+ . .+.....|.--
T Consensus 292 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~-dpir~~yw~~~ 343 (349)
T 3q7a_A 292 PLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE-Y-DQMRAGYWEFR 343 (349)
T ss_dssp CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-T-CGGGHHHHHHH
T ss_pred ccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-h-ChHHHHHHHHH
Confidence 1 234445555566666778999999999997754 2 23344556543
No 129
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.40 E-value=3.2e-05 Score=74.60 Aligned_cols=223 Identities=10% Similarity=-0.003 Sum_probs=131.6
Q ss_pred hhHHHHHHHhcCCC-CC-hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHhcchh
Q 015472 4 ARAHLEEQISRQDL-SD-SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS-------SDLWLDYTQYLDKTLKVG 74 (406)
Q Consensus 4 ~R~~yE~~L~~~~~-~~-~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~-------~~lW~~Y~~~l~~~~~~~ 74 (406)
+...|+.++..... .+ +.....+...+......|+++.+...|++|+..++.. ...+...+..... .+..
T Consensus 120 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~-~~~~ 198 (378)
T 3q15_A 120 AIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDD-FKHY 198 (378)
T ss_dssp HHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHH-hCCH
Confidence 44566666655421 12 3344566666666777788888888888888765432 2344445544443 3467
Q ss_pred hhHHHHHHHHHHhCC---C---CHHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CccccHHHHHHHHHHHHHHHHH
Q 015472 75 NVVRDVYSRATKNCP---W---VGELWVRSLLSLERSRASEEEISTVFEKSLL-----CAFSTFEEYLDLFLTRIDGLRR 143 (406)
Q Consensus 75 e~a~~vyerA~~~~P---~---~~~lW~~y~~~lE~~~~~~e~ar~if~~al~-----~~~~~~~~~~~l~~~~~~~l~R 143 (406)
+.|...|++|+...+ . ...++...+..+ ...+++++|...|++|+. ..+.....+..+...+.
T Consensus 199 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~----- 272 (378)
T 3q15_A 199 DKALPHLEAALELAMDIQNDRFIAISLLNIANSY-DRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLC----- 272 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHH-----
Confidence 788888888887543 1 123555555433 346788888888888887 33322222222221110
Q ss_pred HHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHhccchHHHH
Q 015472 144 RILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKD---MVSARGVWERLLKISGAMLEAW 220 (406)
Q Consensus 144 r~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d---~~~Ar~ife~al~~~~~~~~lW 220 (406)
..+++..+...|++++...... . .+.........+.+....+ + +..|..++++ ....+....++
T Consensus 273 ---------~~g~~~~A~~~~~~al~~~~~~-~-~~~~~~~~~~l~~ly~~~~-~~~~~~~al~~~~~-~~~~~~~~~~~ 339 (378)
T 3q15_A 273 ---------KAGQTQKAFQFIEEGLDHITAR-S-HKFYKELFLFLQAVYKETV-DERKIHDLLSYFEK-KNLHAYIEACA 339 (378)
T ss_dssp ---------HTTCHHHHHHHHHHHHHHCCTT-C-CSCHHHHHHHHHHHHSSSC-CHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred ---------HCCCHHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHh-CCChhHHHHHH
Confidence 1145667788888887764221 1 1222222333444444445 6 5566666655 12234556788
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 221 QSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 221 ~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
...+.+....|+++.|...|++++..
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 88899999999999999999999874
No 130
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.40 E-value=9.1e-05 Score=71.33 Aligned_cols=234 Identities=15% Similarity=0.016 Sum_probs=145.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCC-------HHHHH
Q 015472 30 LKYEQSSGDPGRVQLLYERAITDFPV------SSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV-------GELWV 96 (406)
Q Consensus 30 i~~E~~~g~~~~~~~lyEral~~~P~------~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~-------~~lW~ 96 (406)
+.+....|+++.|...|++|+...+. ...++...+..... .+..+.|...|++|+...+.. ...+.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYH-MKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44556789999999999999977432 23455566655544 346788999999999865431 24555
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCcc--cc----HHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHH
Q 015472 97 RSLLSLERSRASEEEISTVFEKSLLCAF--ST----FEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDY 170 (406)
Q Consensus 97 ~y~~~lE~~~~~~e~ar~if~~al~~~~--~~----~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~ 170 (406)
.++..+ ...+++++|...|++|+.... +. ...+..+.. +... .++++.+...|++++..
T Consensus 187 ~lg~~y-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~-----~y~~---------~~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 187 VIAGNY-DDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIAN-----SYDR---------SGDDQMAVEHFQKAAKV 251 (378)
T ss_dssp HHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HHHH---------HTCHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHH---------CCCHHHHHHHHHHHHHH
Confidence 666533 458999999999999998532 11 111222211 1111 14566788888888876
Q ss_pred HhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-----hHHHHHHHHHHHHHccc---HHHHHHHHHH
Q 015472 171 LSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA-----MLEAWQSYISMEIELDH---INEARSIYKR 242 (406)
Q Consensus 171 l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~-----~~~lW~~y~~~E~~~g~---~~~ar~l~~r 242 (406)
.... ..+.....+...+.+....| +++.|...|++++...+. ..........+....|+ +..|..++++
T Consensus 252 ~~~~--~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 252 SREK--VPDLLPKVLFGLSWTLCKAG-QTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHH--CGGGHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHhh--CChhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 5332 12334667778888999999 999999999999998432 22333333333444566 6666666665
Q ss_pred HHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhhchhHHH
Q 015472 243 CYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEE 286 (406)
Q Consensus 243 al~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~a~~k~~~~~~~ 286 (406)
.-. .+....++.....+-...|+.+......++......+
T Consensus 329 ~~~----~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 368 (378)
T 3q15_A 329 KNL----HAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQED 368 (378)
T ss_dssp TTC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCC----hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 211 1112344555555566678876655555555433333
No 131
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=98.39 E-value=1.8e-05 Score=69.21 Aligned_cols=116 Identities=13% Similarity=0.145 Sum_probs=88.6
Q ss_pred hhhHHHHHHHhc--CCCCChhhHHHHHHHHHHHHhc---CCh---hHHH-HHHHHHHhcCC---------CCHHHHHHHH
Q 015472 3 NARAHLEEQISR--QDLSDSEKFQQYMIYLKYEQSS---GDP---GRVQ-LLYERAITDFP---------VSSDLWLDYT 64 (406)
Q Consensus 3 ~~R~~yE~~L~~--~~~~~~~~~~~w~~Yi~~E~~~---g~~---~~~~-~lyEral~~~P---------~~~~lW~~Y~ 64 (406)
..|..||..|.. .. +| +.++.|..||.|-... |.. .... .++|||+..+- ....+|+.|+
T Consensus 10 ~~r~~fE~~l~~~l~~-~d-DPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya 87 (202)
T 3esl_A 10 QTKIAYEQRLLNDLED-MD-DPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYI 87 (202)
T ss_dssp HHHHHHHHHHHHTGGG-CS-CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccc-CC-CchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHH
Confidence 468999999998 33 22 4589999999997654 332 2355 89999998753 3468999999
Q ss_pred HHHHHhcchhhhHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCc
Q 015472 65 QYLDKTLKVGNVVRDVYSRATKNC--PWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA 123 (406)
Q Consensus 65 ~~l~~~~~~~e~a~~vyerA~~~~--P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~ 123 (406)
.++.. ........+|.-..++- -....+|..|+.++|. .+++.+|..||..+++..
T Consensus 88 ~~~~~--~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~-~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 88 NLFLS--NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLEN-AQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHST--TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTT
T ss_pred Hhhcc--cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcC
Confidence 98621 11345788888887754 4567999999998885 799999999999999964
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.36 E-value=1.2e-05 Score=64.20 Aligned_cols=120 Identities=14% Similarity=0.048 Sum_probs=72.1
Q ss_pred CCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHH
Q 015472 54 PVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDL 133 (406)
Q Consensus 54 P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l 133 (406)
|.++..|...+..+...+ ..+.|...|++++...|....+|..++..+ ...+++++|...|++++...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~~--------- 81 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKG-DYPQAMKHYTEAIKRNPKDAKLYSNRAACY-TKLLEFQLALKDCEECIQLEP--------- 81 (133)
T ss_dssp SCHHHHHHHHHHHHHHTT-CSHHHHHHHHHHHTTCTTCHHHHHHHHHHH-TTTTCHHHHHHHHHHHHHHCT---------
T ss_pred cccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCcHHHHHHHHHHH-HHhccHHHHHHHHHHHHHhCC---------
Confidence 344555555555544332 455666666666666666666666555432 335555555555555544322
Q ss_pred HHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Q 015472 134 FLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS 213 (406)
Q Consensus 134 ~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~ 213 (406)
....+|..++.+....| +++.|...|++++...
T Consensus 82 ----------------------------------------------~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 82 ----------------------------------------------TFIKGYTRKAAALEAMK-DYTKAMDVYQKALDLD 114 (133)
T ss_dssp ----------------------------------------------TCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred ----------------------------------------------CchHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhC
Confidence 12234555566666677 7888888888888888
Q ss_pred cchHHHHHHHHHHHHHcc
Q 015472 214 GAMLEAWQSYISMEIELD 231 (406)
Q Consensus 214 ~~~~~lW~~y~~~E~~~g 231 (406)
|.+..+|..+..+....|
T Consensus 115 p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 115 SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp GGGTHHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHhc
Confidence 887777777776665544
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.36 E-value=1.7e-05 Score=81.53 Aligned_cols=177 Identities=9% Similarity=0.022 Sum_probs=130.3
Q ss_pred HHhcCCh-hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcch---------hhhHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015472 33 EQSSGDP-GRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKV---------GNVVRDVYSRATKNCPWVGELWVRSLLSL 102 (406)
Q Consensus 33 E~~~g~~-~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~---------~e~a~~vyerA~~~~P~~~~lW~~y~~~l 102 (406)
....|.+ ++|..+|+++|..+|.+..+|......+...+.. .+.+...|++|+...|.+..+|....-.+
T Consensus 38 ~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 117 (567)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3445555 6889999999999999999999998888765432 67899999999999999999999988656
Q ss_pred HHccC--CHHHHHHHHHHHHhCccc--cHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCC
Q 015472 103 ERSRA--SEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNT 178 (406)
Q Consensus 103 E~~~~--~~e~ar~if~~al~~~~~--~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~ 178 (406)
. ..+ +++++...+.+++...+. .+|.|...... ++ + ..++++++++...+...
T Consensus 118 ~-~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~-------~l---------~------~~~~~el~~~~~~I~~~ 174 (567)
T 1dce_A 118 S-RLPEPNWARELELCARFLEADERNFHCWDYRRFVAA-------QA---------A------VAPAEELAFTDSLITRN 174 (567)
T ss_dssp H-TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-------HT---------C------CCHHHHHHHHHTTTTTT
T ss_pred H-HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHH-------Hc---------C------CChHHHHHHHHHHHHHC
Confidence 5 456 679999999999997765 33433222111 11 0 02344555555555556
Q ss_pred chHHHHHHHHHHHHHHcC-------------CCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHccc
Q 015472 179 DGLLRLYAYWAHLEQSMG-------------KDMVSARGVWERLLKISGAMLEAWQSYISMEIELDH 232 (406)
Q Consensus 179 ~~~~~l~~~~a~~e~~~~-------------~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~ 232 (406)
+.+...|..-+.+...++ +.++++.+.+.+|+...|++..+|..+.-+....|.
T Consensus 175 p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 175 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence 677788988777666641 146899999999999999999999887766655554
No 134
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.34 E-value=0.00025 Score=67.78 Aligned_cols=234 Identities=12% Similarity=0.054 Sum_probs=144.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHH----H--HHH
Q 015472 29 YLKYEQSSGDPGRVQLLYERAITDFPVSSD-----LWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGE----L--WVR 97 (406)
Q Consensus 29 Yi~~E~~~g~~~~~~~lyEral~~~P~~~~-----lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~----l--W~~ 97 (406)
........|+++.+...+++++...|.+.. ++...+..+... +..+.+...|++|+...|..+. . +..
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK-GELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 344455689999999999999999886533 223333333333 4678899999999987654322 1 223
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCccc------cHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHH
Q 015472 98 SLLSLERSRASEEEISTVFEKSLLCAFS------TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYL 171 (406)
Q Consensus 98 y~~~lE~~~~~~e~ar~if~~al~~~~~------~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l 171 (406)
.+. +....|++++|...|++++..... .........+..+-. ..++++.+...|++++...
T Consensus 99 la~-~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~------------~~g~~~~A~~~~~~al~~~ 165 (373)
T 1hz4_A 99 QSE-ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW------------AWARLDEAEASARSGIEVL 165 (373)
T ss_dssp HHH-HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH------------HTTCHHHHHHHHHHHHHHT
T ss_pred HHH-HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH------------HhcCHHHHHHHHHHHHHHh
Confidence 333 334579999999999999974311 111111111111100 1156667888888888764
Q ss_pred hhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc--chHHHHHH-----HHHHHHHcccHHHHHHHHHHHH
Q 015472 172 SEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG--AMLEAWQS-----YISMEIELDHINEARSIYKRCY 244 (406)
Q Consensus 172 ~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~--~~~~lW~~-----y~~~E~~~g~~~~ar~l~~ral 244 (406)
... . .+.....+...+.+....| +++.|...+++++...+ .....|.. .+.+....|+++.|..++.+++
T Consensus 166 ~~~-~-~~~~~~~~~~la~~~~~~g-~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 242 (373)
T 1hz4_A 166 SSY-Q-PQQQLQCLAMLIQCSLARG-DLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 242 (373)
T ss_dssp TTS-C-GGGGHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred hcc-C-cHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 321 1 1123456777888888899 99999999999998732 22223433 2344567899999999999998
Q ss_pred hcccCCCC--hHHHHHHHHHHHHHhCCHHHHHHHHHhh
Q 015472 245 SKRFTGTG--SEDICHAWLRFEREYGTLEDFDHSVQKV 280 (406)
Q Consensus 245 ~~~~~~~~--~~~i~~~~i~fE~~~G~~e~~~~a~~k~ 280 (406)
.. .+... ....+..........|+.+.....+.+.
T Consensus 243 ~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 243 KP-EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp CC-CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CC-CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 63 22211 1223444555566678876654444443
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.33 E-value=7.9e-05 Score=69.21 Aligned_cols=175 Identities=11% Similarity=-0.051 Sum_probs=116.1
Q ss_pred CHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHccCCHHHHHHHHHHHHhCccc---c-
Q 015472 56 SSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGE-----LWVRSLLSLERSRASEEEISTVFEKSLLCAFS---T- 126 (406)
Q Consensus 56 ~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~-----lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~---~- 126 (406)
....|..-+..+... +..+.+...|++++...|.... .|..++..+....+++++|...|++|+..... .
T Consensus 74 ~~~~l~~~~~~~~~~-~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 152 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQ-KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT
T ss_pred HHHHHHHHHHHHHHh-hhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH
Confidence 334444444444433 3678899999999987775432 23332322334567999999999999974321 1
Q ss_pred --HHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHH
Q 015472 127 --FEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARG 204 (406)
Q Consensus 127 --~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ 204 (406)
...+..+...+ . ..++++.+...|++|++..............++...+.+....| +++.|..
T Consensus 153 ~~~~~~~~lg~~y-----~---------~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~-~y~~Al~ 217 (293)
T 2qfc_A 153 QNLYIENAIANIY-----A---------ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS-RYEESLY 217 (293)
T ss_dssp HHHHHHHHHHHHH-----H---------HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred HHHHHHHHHHHHH-----H---------HcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHh-hHHHHHH
Confidence 11222222111 1 11566778889999987654322111112357888898999999 9999999
Q ss_pred HHHHHHHhccc------hHHHHHHHHHHHHHcccHHHH-HHHHHHHHhc
Q 015472 205 VWERLLKISGA------MLEAWQSYISMEIELDHINEA-RSIYKRCYSK 246 (406)
Q Consensus 205 ife~al~~~~~------~~~lW~~y~~~E~~~g~~~~a-r~l~~ral~~ 246 (406)
.|++++...++ ...++...+......|+++.| ...|++|+..
T Consensus 218 ~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 218 QVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 99999988532 267888889999999999999 8889999863
No 136
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.33 E-value=6.7e-05 Score=70.38 Aligned_cols=207 Identities=14% Similarity=0.093 Sum_probs=130.0
Q ss_pred CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCCHH
Q 015472 37 GDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV------GELWVRSLLSLERSRASEE 110 (406)
Q Consensus 37 g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~------~~lW~~y~~~lE~~~~~~e 110 (406)
|+++.+...|+++.. ... ..+..+.+...|.+|+...+.. ...+...+..+ ...++++
T Consensus 30 ~~~~~A~~~~~~a~~--------------~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~-~~~g~~~ 93 (307)
T 2ifu_A 30 PDYDSAASEYAKAAV--------------AFK-NAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMML-KDLQRMP 93 (307)
T ss_dssp CCHHHHHHHHHHHHH--------------HHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCGG
T ss_pred CCHHHHHHHHHHHHH--------------HHH-HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhCCCHH
Confidence 566666677766632 122 2346788999999999876432 24566665533 4578999
Q ss_pred HHHHHHHHHHhCcc--ccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHH
Q 015472 111 EISTVFEKSLLCAF--STFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYW 188 (406)
Q Consensus 111 ~ar~if~~al~~~~--~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~ 188 (406)
+|...|++|+.... .........+. ....+. .. +++..+...|++|+...+.. ........++...
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~-~lg~~~---------~~-g~~~~A~~~~~~Al~~~~~~-~~~~~~~~~~~~l 161 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALD-RAGKLM---------EP-LDLSKAVHLYQQAAAVFENE-ERLRQAAELIGKA 161 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHH-HHHHHH---------TT-TCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHH---------Hc-CCHHHHHHHHHHHHHHHHhC-CChhHHHHHHHHH
Confidence 99999999998522 11111111111 011110 12 45667888999998875331 1111234678888
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhccch------HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCC-h--HHHHHH
Q 015472 189 AHLEQSMGKDMVSARGVWERLLKISGAM------LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTG-S--EDICHA 259 (406)
Q Consensus 189 a~~e~~~~~d~~~Ar~ife~al~~~~~~------~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~-~--~~i~~~ 259 (406)
+.+...+| +++.|...|++++...+.+ ...|+..+......|+++.|...|++++ . .|.-. . ..++..
T Consensus 162 g~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~-~p~~~~~~e~~~l~~ 238 (307)
T 2ifu_A 162 SRLLVRQQ-KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S-IPGFSGSEDCAALED 238 (307)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T-STTSTTSHHHHHHHH
T ss_pred HHHHHHcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C-CCCCCCCHHHHHHHH
Confidence 99999999 9999999999999986532 2466777777777899999999999999 4 33211 1 112222
Q ss_pred HHHHHHHhCCHHHHHH
Q 015472 260 WLRFEREYGTLEDFDH 275 (406)
Q Consensus 260 ~i~fE~~~G~~e~~~~ 275 (406)
.+.. ...|+.+.+..
T Consensus 239 l~~~-~~~~d~~~~~~ 253 (307)
T 2ifu_A 239 LLQA-YDEQDEEQLLR 253 (307)
T ss_dssp HHHH-HHTTCHHHHHH
T ss_pred HHHH-HHhcCHHHHHH
Confidence 2221 14577777665
No 137
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.32 E-value=0.00082 Score=67.10 Aligned_cols=110 Identities=10% Similarity=-0.093 Sum_probs=60.6
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---cchhhh
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQS----SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKT---LKVGNV 76 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~----~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~---~~~~e~ 76 (406)
+...|+.++.... ...+......... .++++.+...|++++.. .++..+..++.....- .++.+.
T Consensus 98 A~~~~~~a~~~~~------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~ 169 (490)
T 2xm6_A 98 AVIWYKKAALKGL------PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVM 169 (490)
T ss_dssp HHHHHHHHHHTTC------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHCCC------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 4456666665432 2234444444444 45667777777777654 4566666666554431 124566
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHhCc
Q 015472 77 VRDVYSRATKNCPWVGELWVRSLLSLERS---RASEEEISTVFEKSLLCA 123 (406)
Q Consensus 77 a~~vyerA~~~~P~~~~lW~~y~~~lE~~---~~~~e~ar~if~~al~~~ 123 (406)
+...|++|+.. .+...+..++..+... .++.++|...|++++..+
T Consensus 170 A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 217 (490)
T 2xm6_A 170 AREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG 217 (490)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777777664 2345555555433321 456666777777666654
No 138
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.32 E-value=0.00019 Score=66.56 Aligned_cols=160 Identities=11% Similarity=-0.066 Sum_probs=108.3
Q ss_pred chhhhHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHccCCHHHHHHHHHHHHhCcc--ccHH----HHHHHHHHHHHH
Q 015472 72 KVGNVVRDVYSRATKNCPWVGE-----LWVRSLLSLERSRASEEEISTVFEKSLLCAF--STFE----EYLDLFLTRIDG 140 (406)
Q Consensus 72 ~~~e~a~~vyerA~~~~P~~~~-----lW~~y~~~lE~~~~~~e~ar~if~~al~~~~--~~~~----~~~~l~~~~~~~ 140 (406)
++.+.|..+|++++...|.... .|...+..+....+++++|...|++|+...+ ..+. .+..+...+
T Consensus 89 ~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y--- 165 (293)
T 3u3w_A 89 KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY--- 165 (293)
T ss_dssp TCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHH---
T ss_pred hhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH---
Confidence 3567788888888876665443 2333233344445688888899999987432 1211 122222111
Q ss_pred HHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-----
Q 015472 141 LRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA----- 215 (406)
Q Consensus 141 l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~----- 215 (406)
.. .++++.+...|+++++.+.......+....++..++.+...+| +++.|...|++++...+.
T Consensus 166 --~~---------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~-~y~~A~~~~~~al~~~~~~~~~~ 233 (293)
T 3u3w_A 166 --AE---------NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS-RYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp --HH---------TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTBCT
T ss_pred --HH---------cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHcCcHH
Confidence 11 1456677888888887654332222334568888999999999 999999999999988543
Q ss_pred -hHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhc
Q 015472 216 -MLEAWQSYISMEIELD-HINEARSIYKRCYSK 246 (406)
Q Consensus 216 -~~~lW~~y~~~E~~~g-~~~~ar~l~~ral~~ 246 (406)
...+|...+......| .++.|...|++|+..
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 2678888888888999 579999999999874
No 139
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=1.2e-05 Score=65.49 Aligned_cols=105 Identities=11% Similarity=-0.050 Sum_probs=91.2
Q ss_pred hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHH
Q 015472 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS---SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWV 96 (406)
Q Consensus 20 ~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~---~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~ 96 (406)
+.....|...+......|+++.+...|++++..+|.+ ..+|..++..+... +..+.+...|++++...|....+|.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKL-EDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHhhCccCHHHHH
Confidence 4467788888888899999999999999999999987 88999998876654 4788999999999999999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCcccc
Q 015472 97 RSLLSLERSRASEEEISTVFEKSLLCAFST 126 (406)
Q Consensus 97 ~y~~~lE~~~~~~e~ar~if~~al~~~~~~ 126 (406)
.++..+ ...+++++|...|++++...|..
T Consensus 104 ~~a~~~-~~~~~~~~A~~~~~~al~~~p~~ 132 (148)
T 2dba_A 104 RRSQAL-EKLGRLDQAVLDLQRCVSLEPKN 132 (148)
T ss_dssp HHHHHH-HHHTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHH-HHcCCHHHHHHHHHHHHHcCCCc
Confidence 988755 45899999999999999976653
No 140
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.30 E-value=1.3e-05 Score=63.47 Aligned_cols=103 Identities=12% Similarity=-0.045 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCC-------HH
Q 015472 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV-------GE 93 (406)
Q Consensus 21 ~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~-------~~ 93 (406)
+....|...+......|+++.+...|++++...|.++.+|..++..+...+ ..+.+...|++++...|.. ..
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKG-DYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 345678888888888999999999999999999999999999998776544 6889999999999988765 77
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCccc
Q 015472 94 LWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (406)
Q Consensus 94 lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~ 125 (406)
+|..++..+. ..+++++|...|++++...++
T Consensus 81 ~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 81 AYARIGNSYF-KEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHH-HhccHHHHHHHHHHHHHhCCC
Confidence 8888887554 589999999999999997653
No 141
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.30 E-value=2.3e-05 Score=62.77 Aligned_cols=67 Identities=10% Similarity=-0.113 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCcc
Q 015472 56 SSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAF 124 (406)
Q Consensus 56 ~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~ 124 (406)
+...|...+..+... +..+.|...|++|+...|.+..+|..++..+ ...+++++|...|++++...|
T Consensus 3 ~a~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~p 69 (126)
T 3upv_A 3 KAEEARLEGKEYFTK-SDWPNAVKAYTEMIKRAPEDARGYSNRAAAL-AKLMSFPEAIADCNKAIEKDP 69 (126)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhCC
Confidence 445566666555443 3566677777777777777777777766533 345666666666666655433
No 142
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.29 E-value=4.3e-05 Score=73.03 Aligned_cols=109 Identities=11% Similarity=-0.098 Sum_probs=94.3
Q ss_pred hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHhcchhhhHHHHHHHH
Q 015472 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS---------------SDLWLDYTQYLDKTLKVGNVVRDVYSRA 84 (406)
Q Consensus 20 ~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~---------------~~lW~~Y~~~l~~~~~~~e~a~~vyerA 84 (406)
+.....|...+......|+++.|...|++|+..+|.+ ..+|..++..+... +..+.|...|++|
T Consensus 144 p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-g~~~~A~~~~~~a 222 (336)
T 1p5q_A 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL-QAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 3456788888888889999999999999999999998 69999999877764 4789999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHH
Q 015472 85 TKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEY 130 (406)
Q Consensus 85 ~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~ 130 (406)
+...|....+|..++..+ ...+++++|...|++|+...|.....+
T Consensus 223 l~~~p~~~~a~~~lg~~~-~~~g~~~~A~~~~~~al~l~P~~~~a~ 267 (336)
T 1p5q_A 223 LELDSNNEKGLSRRGEAH-LAVNDFELARADFQKVLQLYPNNKAAK 267 (336)
T ss_dssp HHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHhCCCcHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHCCCCHHHH
Confidence 999999999999999855 458999999999999999877654433
No 143
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.27 E-value=1.1e-05 Score=65.58 Aligned_cols=102 Identities=11% Similarity=-0.034 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCH-------H
Q 015472 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVG-------E 93 (406)
Q Consensus 21 ~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~-------~ 93 (406)
+....|...+....+.|+++.|...|++||..+|.++.+|...+..+... +..+.|...|++|+...|... .
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEE-KKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHh-hhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 34557888888888899999999999999999999999999999877654 478999999999998776432 3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCcc
Q 015472 94 LWVRSLLSLERSRASEEEISTVFEKSLLCAF 124 (406)
Q Consensus 94 lW~~y~~~lE~~~~~~e~ar~if~~al~~~~ 124 (406)
+|...+..+ ...+++++|...|+++|...+
T Consensus 85 ~~~~lg~~~-~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 85 AMSRAGNAF-QKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHHHH-HHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHhhCc
Confidence 565556544 358999999999999998654
No 144
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=98.25 E-value=1.1e-05 Score=71.63 Aligned_cols=112 Identities=18% Similarity=0.338 Sum_probs=87.2
Q ss_pred hhhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhc---CC--hhHHHHHHHHHHhcCCCC---------HHHHHHHHHHHH
Q 015472 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSS---GD--PGRVQLLYERAITDFPVS---------SDLWLDYTQYLD 68 (406)
Q Consensus 3 ~~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~---g~--~~~~~~lyEral~~~P~~---------~~lW~~Y~~~l~ 68 (406)
..|..||..|.....+| +.++.|..||.|-... |. -.....++|||+..+-.+ ..+|+.|+.+.
T Consensus 53 ~~r~~fE~~i~~~~~~d-DPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~~- 130 (223)
T 4aez_C 53 KERMGHERKIETSESLD-DPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYI- 130 (223)
T ss_dssp HHHHHHHHHHHHGGGSS-CTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcccCC-CChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHcc-
Confidence 36889999998732122 3589999999998764 32 234779999999987544 67999999863
Q ss_pred HhcchhhhHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCc
Q 015472 69 KTLKVGNVVRDVYSRATKNC--PWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA 123 (406)
Q Consensus 69 ~~~~~~e~a~~vyerA~~~~--P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~ 123 (406)
+....+|.-..++- -....+|..|+.++|. .+++.+|..||..++...
T Consensus 131 ------~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~-~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 131 ------DEPVELFSFLAHHHIGQESSIFYEEYANYFES-RGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp ------SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHT
T ss_pred ------CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcC
Confidence 23667888887754 4567999999998885 799999999999999853
No 145
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.23 E-value=2.6e-06 Score=74.43 Aligned_cols=55 Identities=11% Similarity=0.050 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHH
Q 015472 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEAR 237 (406)
Q Consensus 182 ~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar 237 (406)
...+...+.+...+| +++.|...|++++...|++..+|..+..+....|+..++.
T Consensus 122 ~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 122 VKALYKLGVANMYFG-FLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666677 7777777777777777777777777777666666555444
No 146
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.22 E-value=4.3e-05 Score=61.69 Aligned_cols=70 Identities=14% Similarity=0.016 Sum_probs=45.4
Q ss_pred cCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCc
Q 015472 52 DFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA 123 (406)
Q Consensus 52 ~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~ 123 (406)
..|.++..|...+..+...+ ..+.|...|++|+...|.+..+|..++..+ ...+++++|...|++++...
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~al~~~ 73 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGR-KYPEAAACYGRAITRNPLVAVYYTNRALCY-LKMQQPEQALADCRRALELD 73 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC
T ss_pred CccccHHHHHHHHHHHHHhC-cHHHHHHHHHHHHhhCcCcHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhC
Confidence 35667777777776665433 567777777777777777777777777643 34666777766666666543
No 147
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.21 E-value=0.00036 Score=64.75 Aligned_cols=186 Identities=15% Similarity=0.127 Sum_probs=115.9
Q ss_pred HHHHHHHHHhcCCCCHH-------HHHHHHH-HHHHhc------------chhhhHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015472 42 VQLLYERAITDFPVSSD-------LWLDYTQ-YLDKTL------------KVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (406)
Q Consensus 42 ~~~lyEral~~~P~~~~-------lW~~Y~~-~l~~~~------------~~~e~a~~vyerA~~~~P~~~~lW~~y~~~ 101 (406)
...+||-.+..+|.+.. +...|+. |++... ....+|+.+|.||.... . ..
T Consensus 51 ~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~--------~--ra 120 (301)
T 3u64_A 51 VLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYA--------L--SS 120 (301)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHH--------H--HH
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHH--------H--HH
Confidence 35789999999999864 5777765 554311 12346788888876421 1 12
Q ss_pred HHHccCCHH-HHH----HHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHhc-cccchhhhhHHHHHHHHHHHHHHHhhh
Q 015472 102 LERSRASEE-EIS----TVFEKSLL-CAFSTFEEYLDLFLTRIDGLRRRILF-SGEVEGVLDYSLIRETFQRASDYLSEQ 174 (406)
Q Consensus 102 lE~~~~~~e-~ar----~if~~al~-~~~~~~~~~~~l~~~~~~~l~Rr~~~-~~~~e~~~~~~~~r~~f~~a~~~l~~~ 174 (406)
|+.....+. .++ .-|..+|. +.+..+..++=....+... +.. +...........++..++++++.-+.+
T Consensus 121 L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~----a~~~~gg~~Al~~l~~A~a~lerAleLDP~~ 196 (301)
T 3u64_A 121 LETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAA----FALTPLGSALPDTVHAAVMMLERACDLWPSY 196 (301)
T ss_dssp HHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHH----HTTSCTTSCCHHHHHHHHHHHHHHHHHCTTH
T ss_pred HHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHH----HhcCCCChHHHHhHHHHHHHHHHHHHhCCCc
Confidence 332222222 111 23444554 3444444332111222211 111 122222344557888899998863211
Q ss_pred hcCCchHHHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHc-ccHHHHHHHHHHHHhc
Q 015472 175 MKNTDGLLRLYAYWAHLEQSM----GKDMVSARGVWERLLKISGAM-LEAWQSYISMEIEL-DHINEARSIYKRCYSK 246 (406)
Q Consensus 175 ~~~~~~~~~l~~~~a~~e~~~----~~d~~~Ar~ife~al~~~~~~-~~lW~~y~~~E~~~-g~~~~ar~l~~ral~~ 246 (406)
. .-..|..++.++... ||+.++|+..|++|+..+|+. ...+..|++|.... |+.+.++.++++++..
T Consensus 197 ~-----~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 197 Q-----EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp H-----HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred c-----cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 0 234777888887774 449999999999999999975 99999999999885 9999999999999974
No 148
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.19 E-value=1.7e-06 Score=86.57 Aligned_cols=85 Identities=6% Similarity=0.034 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHH
Q 015472 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRF 263 (406)
Q Consensus 184 l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~f 263 (406)
+|.+++.....++ +++.|...|++++...|+++..|...+......|+++.|+..|++|+.. .| ....++......
T Consensus 319 ~~~nla~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l-~P--~~~~a~~~l~~~ 394 (457)
T 1kt0_A 319 AFLNLAMCYLKLR-EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV-NP--QNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C------CHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CC--CCHHHHHHHHHH
Confidence 4444555555666 6777777777777776666666666666666667777777777777653 22 123344444444
Q ss_pred HHHhCCHHH
Q 015472 264 EREYGTLED 272 (406)
Q Consensus 264 E~~~G~~e~ 272 (406)
....|..+.
T Consensus 395 ~~~~~~~~~ 403 (457)
T 1kt0_A 395 QKKAKEHNE 403 (457)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444554443
No 149
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.18 E-value=0.00013 Score=63.61 Aligned_cols=146 Identities=6% Similarity=-0.089 Sum_probs=109.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015472 26 YMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERS 105 (406)
Q Consensus 26 w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~ 105 (406)
+...+......|+++.+...|++++ +.++.+|...+..+... +..+.|...|++|+...|.....|..++..+ ..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~-~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTIL-KNMTEAEKAFTRSINRDKHLAVAYFQRGMLY-YQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCccchHHHHHHHHHH-HH
Confidence 3344555567899999999999996 33788999999877654 4788999999999999999999999998754 45
Q ss_pred cCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHH
Q 015472 106 RASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLY 185 (406)
Q Consensus 106 ~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~ 185 (406)
.+++++|...|++++...+..... . +........+....+|
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~--------------------------~-------------~~~~~~~~~~~~~~~~ 124 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLI--------------------------D-------------YKILGLQFKLFACEVL 124 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEE--------------------------E-------------CGGGTBCCEEEHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCCccHH--------------------------H-------------HHHhccccCccchHHH
Confidence 899999999999999865431000 0 0000000123345677
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhccch
Q 015472 186 AYWAHLEQSMGKDMVSARGVWERLLKISGAM 216 (406)
Q Consensus 186 ~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~ 216 (406)
...+.+....| +++.|...|++++...|+.
T Consensus 125 ~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 125 YNIAFMYAKKE-EWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHcc-CHHHHHHHHHHHHHcCccc
Confidence 78888888889 9999999999999998875
No 150
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.17 E-value=0.0001 Score=57.50 Aligned_cols=45 Identities=16% Similarity=0.099 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 015472 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIE 229 (406)
Q Consensus 184 l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~ 229 (406)
+|..++.+....| +++.|..+|++++...|+++.++..+......
T Consensus 79 ~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 79 AWYNLGNAYYKQG-DYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 3444555555666 77777777777777777777666666554433
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.15 E-value=3.3e-05 Score=59.90 Aligned_cols=98 Identities=10% Similarity=0.039 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHH
Q 015472 155 LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHIN 234 (406)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~ 234 (406)
+++..+...|++++.. .|....+|...+.+....| +++.|...|++++...|+++.+|..++......|+++
T Consensus 18 ~~~~~A~~~~~~~~~~-------~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 89 (118)
T 1elw_A 18 GNIDDALQCYSEAIKL-------DPHNHVLYSNRSAAYAKKG-DYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 89 (118)
T ss_dssp TCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHHHHHHHH-------CCCcHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHH
Confidence 4455666777777664 2445668888999888899 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCChHHHHHHHHHH
Q 015472 235 EARSIYKRCYSKRFTGTGSEDICHAWLRF 263 (406)
Q Consensus 235 ~ar~l~~ral~~~~~~~~~~~i~~~~i~f 263 (406)
.|..+|++++.. .|. ...++......
T Consensus 90 ~A~~~~~~~~~~-~~~--~~~~~~~l~~~ 115 (118)
T 1elw_A 90 EAKRTYEEGLKH-EAN--NPQLKEGLQNM 115 (118)
T ss_dssp HHHHHHHHHHTT-CTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCC--CHHHHHHHHHh
Confidence 999999999974 332 34555554443
No 152
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.13 E-value=2.7e-05 Score=66.11 Aligned_cols=101 Identities=13% Similarity=0.044 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHHhcchhhhHHHHHHHHHHh--
Q 015472 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPV-------SSD-----LWLDYTQYLDKTLKVGNVVRDVYSRATKN-- 87 (406)
Q Consensus 22 ~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~-------~~~-----lW~~Y~~~l~~~~~~~e~a~~vyerA~~~-- 87 (406)
....|..-+.-..+.|+++.+...|++||..+|. +.. +|.+.+..+... +..++|...|++|+..
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~L-gr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL-RSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhhh
Confidence 3456777787788889999999999999999998 544 999999877764 4788999999999999
Q ss_pred -----CCCCHHHH----HHHHHHHHHccCCHHHHHHHHHHHHhCcc
Q 015472 88 -----CPWVGELW----VRSLLSLERSRASEEEISTVFEKSLLCAF 124 (406)
Q Consensus 88 -----~P~~~~lW----~~y~~~lE~~~~~~e~ar~if~~al~~~~ 124 (406)
.|.....| ...+..+. ..+++++|...|++|+...|
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~-~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALD-GLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHH-HCCCHHHHHHHHHHHHhcCC
Confidence 99999999 88887664 58999999999999999765
No 153
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.13 E-value=8.7e-05 Score=64.53 Aligned_cols=104 Identities=12% Similarity=-0.110 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHhcchhhhHHHHHHHHH
Q 015472 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS----------------DLWLDYTQYLDKTLKVGNVVRDVYSRAT 85 (406)
Q Consensus 22 ~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~----------------~lW~~Y~~~l~~~~~~~e~a~~vyerA~ 85 (406)
....|...+......|+++.|...|++++..+|.++ .+|..++..+... +..+.|...|++|+
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al 115 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN-KDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHH
Confidence 455777778878889999999999999999999887 8999988877654 47889999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccH
Q 015472 86 KNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTF 127 (406)
Q Consensus 86 ~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~ 127 (406)
...|....+|..++..+ ...+++++|...|++++...|...
T Consensus 116 ~~~p~~~~~~~~lg~~~-~~~~~~~~A~~~~~~al~~~p~~~ 156 (198)
T 2fbn_A 116 KIDKNNVKALYKLGVAN-MYFGFLEEAKENLYKAASLNPNNL 156 (198)
T ss_dssp HHSTTCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred HhCcccHHHHHHHHHHH-HHcccHHHHHHHHHHHHHHCCCcH
Confidence 99999999999998755 458999999999999999776543
No 154
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.12 E-value=4.2e-05 Score=66.81 Aligned_cols=102 Identities=5% Similarity=-0.116 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCH---------
Q 015472 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVG--------- 92 (406)
Q Consensus 22 ~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~--------- 92 (406)
....|...+......|+++.+...|++++..+|.++..|..++..+... +..+.|...|++|+...|...
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 114 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT-EKYDLAIKDLKEALIQLRGNQLIDYKILGL 114 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTTTCSEEECGGGTB
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc-ccHHHHHHHHHHHHHhCCCccHHHHHHhcc
Confidence 3568888888888999999999999999999999999999999887764 468899999999999888755
Q ss_pred -------HHHHHHHHHHHHccCCHHHHHHHHHHHHhCccc
Q 015472 93 -------ELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (406)
Q Consensus 93 -------~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~ 125 (406)
.+|...+..+ ...+++++|...|++++...|.
T Consensus 115 ~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 115 QFKLFACEVLYNIAFMY-AKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp CCEEEHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHTTCCS
T ss_pred ccCccchHHHHHHHHHH-HHccCHHHHHHHHHHHHHcCcc
Confidence 8888888755 4589999999999999997664
No 155
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.12 E-value=3e-05 Score=65.36 Aligned_cols=84 Identities=13% Similarity=0.111 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHH
Q 015472 155 LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHIN 234 (406)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~ 234 (406)
+++..+...|++++.. .+....+|...+.+....| +++.|...|++++..+|+++.+|..++......|+++
T Consensus 25 g~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 96 (164)
T 3sz7_A 25 KEYSKAIDLYTQALSI-------APANPIYLSNRAAAYSASG-QHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYK 96 (164)
T ss_dssp TCHHHHHHHHHHHHHH-------STTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHh-------CCcCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Confidence 4556677777777765 3445678889999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 015472 235 EARSIYKRCYSK 246 (406)
Q Consensus 235 ~ar~l~~ral~~ 246 (406)
.|..+|++++..
T Consensus 97 ~A~~~~~~al~~ 108 (164)
T 3sz7_A 97 GAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999984
No 156
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.11 E-value=9.9e-05 Score=61.91 Aligned_cols=104 Identities=11% Similarity=-0.115 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHhcchhhhHHHHHHH
Q 015472 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITD------------------FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (406)
Q Consensus 22 ~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~------------------~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyer 83 (406)
....|..-+......|+++.|...|.+||.. .|.+..+|...+..+...+ ..+.|...|++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~-~~~~A~~~~~~ 88 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIG-DLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHH
Confidence 4567888888888899999999999999998 6777789999988776544 68899999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccH
Q 015472 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTF 127 (406)
Q Consensus 84 A~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~ 127 (406)
|+...|.....|...+..+ ...+++++|...|++++...|...
T Consensus 89 al~~~p~~~~a~~~~g~~~-~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKAR-IAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHhcCCcchHHHHHHHHHH-HHHhcHHHHHHHHHHHHhcCCCCH
Confidence 9999999999999999855 458999999999999999877643
No 157
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.10 E-value=9.3e-06 Score=75.70 Aligned_cols=197 Identities=6% Similarity=-0.099 Sum_probs=134.6
Q ss_pred hhhHHHHHHHhcCCCCChhhHHHHHHH-------HHHHHhcCChhHHHHHHHHHHhcCCCC-------------------
Q 015472 3 NARAHLEEQISRQDLSDSEKFQQYMIY-------LKYEQSSGDPGRVQLLYERAITDFPVS------------------- 56 (406)
Q Consensus 3 ~~R~~yE~~L~~~~~~~~~~~~~w~~Y-------i~~E~~~g~~~~~~~lyEral~~~P~~------------------- 56 (406)
.++..|..++...| ...+.|... .......+....+...+.+++...|..
T Consensus 24 ~A~~~F~~a~~~dP----~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~ 99 (282)
T 4f3v_A 24 RSLDLFTEITNYDE----SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVT 99 (282)
T ss_dssp HHHHHHHHHHHHCT----TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECS
T ss_pred HHHHHHHHHHHhCh----hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccC
Confidence 36788999999987 368899998 454554455566778888888865532
Q ss_pred --HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHH
Q 015472 57 --SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLF 134 (406)
Q Consensus 57 --~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~ 134 (406)
.++++.|+..+...+ .++.|..+|+.++...|... .+...+. +-...++++++...|+.++..+.+....-+.++
T Consensus 100 ~r~dl~LayA~~L~~~g-~y~eA~~~l~~~~~~~p~~~-~~~~~a~-l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~ 176 (282)
T 4f3v_A 100 SPLAITMGFAACEAAQG-NYADAMEALEAAPVAGSEHL-VAWMKAV-VYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVA 176 (282)
T ss_dssp SHHHHHHHHHHHHHHHT-CHHHHHHHHTSSCCTTCHHH-HHHHHHH-HHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCchH-HHHHHHH-HHHHcCCHHHHHHHHHHhhccCCcccHHHHHHH
Confidence 467788998887654 68899999999988778554 3333332 333579999999999988776533211112222
Q ss_pred HHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCC-ch-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 015472 135 LTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNT-DG-LLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (406)
Q Consensus 135 ~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~-~~-~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~ 212 (406)
+..+ . ...+++..+...|+++..- .. |. ....+...+..+..+| +.++|+.+|++++..
T Consensus 177 LG~a---l---------~~LG~~~eAl~~l~~a~~g------~~~P~~~~da~~~~glaL~~lG-r~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 177 HGVA---A---------ANLALFTEAERRLTEANDS------PAGEACARAIAWYLAMARRSQG-NESAAVALLEWLQTT 237 (282)
T ss_dssp HHHH---H---------HHTTCHHHHHHHHHHHHTS------TTTTTTHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HHHH---H---------HHCCCHHHHHHHHHHHhcC------CCCccccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc
Confidence 2111 0 1124455666666666431 11 22 4567888898999999 999999999999999
Q ss_pred ccchHHHHHHHHHH
Q 015472 213 SGAMLEAWQSYISM 226 (406)
Q Consensus 213 ~~~~~~lW~~y~~~ 226 (406)
+|+ ..+|....+.
T Consensus 238 ~P~-~~~~~aL~~~ 250 (282)
T 4f3v_A 238 HPE-PKVAAALKDP 250 (282)
T ss_dssp SCC-HHHHHHHHCT
T ss_pred CCc-HHHHHHHhCC
Confidence 999 8888776543
No 158
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.10 E-value=6.1e-05 Score=59.42 Aligned_cols=104 Identities=15% Similarity=0.083 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHH
Q 015472 155 LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHIN 234 (406)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~ 234 (406)
+++..+...|++++.. .+....+|..++.+....| +++.|..+|++++...|+++.+|...+......|+++
T Consensus 26 ~~~~~A~~~~~~~~~~-------~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (131)
T 2vyi_A 26 ENFEAAVHFYGKAIEL-------NPANAVYFCNRAAAYSKLG-NYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHV 97 (131)
T ss_dssp TCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred cCHHHHHHHHHHHHHc-------CCCCHHHHHHHHHHHHHhh-chHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHH
Confidence 3455666677776654 2444668888899888899 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCC
Q 015472 235 EARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGT 269 (406)
Q Consensus 235 ~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~ 269 (406)
.|..+|++++.. .|. ...++..........|+
T Consensus 98 ~A~~~~~~~~~~-~p~--~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 98 EAVAYYKKALEL-DPD--NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHHHH-STT--CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc-Ccc--chHHHHHHHHHHHHHhc
Confidence 999999999984 332 34555555555444443
No 159
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.08 E-value=3e-05 Score=65.76 Aligned_cols=88 Identities=9% Similarity=-0.083 Sum_probs=73.4
Q ss_pred ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc---------hhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--
Q 015472 38 DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLK---------VGNVVRDVYSRATKNCPWVGELWVRSLLSLERSR-- 106 (406)
Q Consensus 38 ~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~---------~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~-- 106 (406)
.++.+...|++++..+|.+++.|..++..+...++ ..+.|+..|++|+...|.....|...+..+-..+
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l 96 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL 96 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhccc
Confidence 45679999999999999999999999987765432 1468999999999999999999999887554322
Q ss_pred --------CCHHHHHHHHHHHHhCccc
Q 015472 107 --------ASEEEISTVFEKSLLCAFS 125 (406)
Q Consensus 107 --------~~~e~ar~if~~al~~~~~ 125 (406)
+++++|...|++|+...|.
T Consensus 97 ~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 97 TPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 5799999999999998775
No 160
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.08 E-value=3.3e-05 Score=61.30 Aligned_cols=88 Identities=16% Similarity=0.068 Sum_probs=60.2
Q ss_pred cCChhHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHH
Q 015472 36 SGDPGRVQLLYERAITD---FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEI 112 (406)
Q Consensus 36 ~g~~~~~~~lyEral~~---~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~a 112 (406)
.|+++.+...|+++|.. +|.++.+|...+..+... +..+.|...|++|+...|....+|..++..+ ...+++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTL-GEYRKAEAVLANGVKQFPNHQALRVFYAMVL-YNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCchHHHHHHHHHH-HHcCCHHHH
Confidence 46677777778888777 477777777777666543 3567777788888877777777777777644 346777778
Q ss_pred HHHHHHHHhCccc
Q 015472 113 STVFEKSLLCAFS 125 (406)
Q Consensus 113 r~if~~al~~~~~ 125 (406)
...|++++...|.
T Consensus 81 ~~~~~~al~~~p~ 93 (117)
T 3k9i_A 81 VELLLKIIAETSD 93 (117)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCC
Confidence 8888877775443
No 161
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.07 E-value=0.0001 Score=58.64 Aligned_cols=98 Identities=8% Similarity=-0.022 Sum_probs=81.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCC---HHHHHHHHH
Q 015472 27 MIYLKYEQSSGDPGRVQLLYERAITDFPVSS---DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV---GELWVRSLL 100 (406)
Q Consensus 27 ~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~---~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~---~~lW~~y~~ 100 (406)
...+......|+++.+...|++++..+|.++ ..|...+...... +..+.|...|++++...|.+ ...|..++.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYAT-RNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 3344555678999999999999999999988 7888888776654 47889999999999999988 777888887
Q ss_pred HHHHccCCHHHHHHHHHHHHhCcccc
Q 015472 101 SLERSRASEEEISTVFEKSLLCAFST 126 (406)
Q Consensus 101 ~lE~~~~~~e~ar~if~~al~~~~~~ 126 (406)
.+. ..+++++|...|++++...|..
T Consensus 85 ~~~-~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 85 SQY-GEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHH-HcCCHHHHHHHHHHHHHHCCCC
Confidence 553 5899999999999999876653
No 162
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.06 E-value=0.00061 Score=63.74 Aligned_cols=178 Identities=8% Similarity=-0.025 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCC-----
Q 015472 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS------SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV----- 91 (406)
Q Consensus 23 ~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~------~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~----- 91 (406)
...+..-+......|+++.+...|++++...+.. ...+...+..+... +..+.|...|++|+...+..
T Consensus 36 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~-g~~~~A~~~~~~Al~l~~~~g~~~~ 114 (307)
T 2ifu_A 36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDL-QRMPEAVQYIEKASVMYVENGTPDT 114 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCGGGGHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3456666666777899999999999999886533 33555555554443 46789999999999875432
Q ss_pred -HHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccc--cHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHH
Q 015472 92 -GELWVRSLLSLERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRAS 168 (406)
Q Consensus 92 -~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~--~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~ 168 (406)
...|...+..++ . +++++|...|++|+...+. ........+.. +..+.. ..+++..+...|++++
T Consensus 115 ~a~~~~~lg~~~~-~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~-lg~~~~---------~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 115 AAMALDRAGKLME-P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGK-ASRLLV---------RQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHHHHHHHT-T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHH---------HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHH-HHHHHH---------HcCCHHHHHHHHHHHH
Confidence 356777776554 4 9999999999999985432 11111111111 111111 1256677888899988
Q ss_pred HHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccch
Q 015472 169 DYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM 216 (406)
Q Consensus 169 ~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~ 216 (406)
....... ........+...+.+....| +++.|...|++++ ..|+.
T Consensus 183 ~~~~~~~-~~~~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 183 SMYKEME-NYPTCYKKCIAQVLVQLHRA-DYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHT-TSTTS
T ss_pred HHHHHcC-ChhHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHh-CCCCC
Confidence 8653221 11122335666666777778 9999999999999 87753
No 163
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.06 E-value=0.00028 Score=62.35 Aligned_cols=177 Identities=10% Similarity=-0.088 Sum_probs=113.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC----CHHHHHHHHH
Q 015472 42 VQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRA----SEEEISTVFE 117 (406)
Q Consensus 42 ~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~----~~e~ar~if~ 117 (406)
+...|+++... .++..+...+.++... ++.+.|...|++|+.. .....+..++..+.. + ++++|...|+
T Consensus 5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~-~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~--~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDRRAQYYLADTWVSS-GDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR--NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHT--TCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS--STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc--CCCCCCHHHHHHHHH
Confidence 56678888765 6788888887766653 4678888888888874 345666666654432 4 7888888998
Q ss_pred HHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCc--hHHHHHHHHHHHHHH-
Q 015472 118 KSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTD--GLLRLYAYWAHLEQS- 194 (406)
Q Consensus 118 ~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~--~~~~l~~~~a~~e~~- 194 (406)
+|+..+.. ..+..+...+. ... ....++..+...|+++.+. .+ .....+..++.+...
T Consensus 78 ~A~~~g~~--~a~~~Lg~~y~--------~g~--g~~~d~~~A~~~~~~A~~~-------~~~~~~~~a~~~Lg~~y~~g 138 (212)
T 3rjv_A 78 KAVEAGSK--SGEIVLARVLV--------NRQ--AGATDVAHAITLLQDAARD-------SESDAAVDAQMLLGLIYASG 138 (212)
T ss_dssp HHHHTTCH--HHHHHHHHHHT--------CGG--GSSCCHHHHHHHHHHHTSS-------TTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCH--HHHHHHHHHHH--------cCC--CCccCHHHHHHHHHHHHHc-------CCCcchHHHHHHHHHHHHcC
Confidence 88775432 22222221110 000 0013445556666665443 22 224566677777766
Q ss_pred ---cCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHc-c-----cHHHHHHHHHHHHhc
Q 015472 195 ---MGKDMVSARGVWERLLKISGAMLEAWQSYISMEIEL-D-----HINEARSIYKRCYSK 246 (406)
Q Consensus 195 ---~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~-g-----~~~~ar~l~~ral~~ 246 (406)
.+ |+.+|...|++++.. +.++..+.....+.... | +++.|..+|++|+..
T Consensus 139 ~g~~~-d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 139 VHGPE-DDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp SSSSC-CHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred CCCCC-CHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 55 899999999999998 44444555555554432 4 899999999999974
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.06 E-value=5.9e-05 Score=61.32 Aligned_cols=101 Identities=15% Similarity=0.058 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcCCchH---HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcc
Q 015472 155 LDYSLIRETFQRASDYLSEQMKNTDGL---LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELD 231 (406)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~~~~~~---~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g 231 (406)
+++..+...|++++.. .+.. ..+|..++......+ +++.|...|++++...|+++.+|..++......|
T Consensus 42 ~~~~~A~~~~~~a~~~-------~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 113 (148)
T 2dba_A 42 GDYGGALAAYTQALGL-------DATPQDQAVLHRNRAACHLKLE-DYDKAETEASKAIEKDGGDVKALYRRSQALEKLG 113 (148)
T ss_dssp TCHHHHHHHHHHHHTS-------CCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHH-------cccchHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcC
Confidence 3455666677776654 2333 678888898888899 9999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHH
Q 015472 232 HINEARSIYKRCYSKRFTGTGSEDICHAWLRFERE 266 (406)
Q Consensus 232 ~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~ 266 (406)
+++.|..+|++++.. .|. ...++..+..+...
T Consensus 114 ~~~~A~~~~~~al~~-~p~--~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 114 RLDQAVLDLQRCVSL-EPK--NKVFQEALRNISGP 145 (148)
T ss_dssp CHHHHHHHHHHHHHH-CSS--CHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHc-CCC--cHHHHHHHHHHHhh
Confidence 999999999999974 332 35667666555443
No 165
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.05 E-value=0.0019 Score=59.67 Aligned_cols=174 Identities=6% Similarity=-0.141 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCC------
Q 015472 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD-----LWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV------ 91 (406)
Q Consensus 23 ~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~-----lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~------ 91 (406)
...+..-+......|+++.+...|++++...|.... .|..++..+....+..+.|...|++|+...+..
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 344555556666789999999999999998776543 233333222223346789999999999765433
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhC---ccccH----HHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHH
Q 015472 92 GELWVRSLLSLERSRASEEEISTVFEKSLLC---AFSTF----EEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETF 164 (406)
Q Consensus 92 ~~lW~~y~~~lE~~~~~~e~ar~if~~al~~---~~~~~----~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f 164 (406)
..+|...+..+ ...+++++|...|++|+.. .+... ..+..+...+. ..++++.+...|
T Consensus 155 ~~~~~~lg~~y-~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~--------------~~~~y~~Al~~~ 219 (293)
T 2qfc_A 155 LYIENAIANIY-AENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY--------------LDSRYEESLYQV 219 (293)
T ss_dssp HHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH--------------HTTCHHHHHHHH
T ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH--------------HHhhHHHHHHHH
Confidence 34666666533 4589999999999999953 22221 12222221111 125677888889
Q ss_pred HHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHhc
Q 015472 165 QRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSA-RGVWERLLKIS 213 (406)
Q Consensus 165 ~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~A-r~ife~al~~~ 213 (406)
++++..... .........++...+.+...+| +++.| ...|++|+...
T Consensus 220 ~kal~~~~~-~~~~~~~~~~~~~lg~~y~~~g-~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 220 NKAIEISCR-INSMALIGQLYYQRGECLRKLE-YEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHH-TTBCSSHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-cCcHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHH
Confidence 998886522 1112223567788888889999 89999 88899999763
No 166
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.04 E-value=0.00033 Score=64.86 Aligned_cols=164 Identities=12% Similarity=-0.016 Sum_probs=110.7
Q ss_pred CCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHH
Q 015472 54 PVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDL 133 (406)
Q Consensus 54 P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l 133 (406)
|.+...|...+..+...+ ..+.|...|++|+...|....+|..++..+ ...+++++|...|++++...|..+..++.+
T Consensus 1 p~~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 78 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGR-KYPEAAACYGRAITRNPLVAVYYTNRALCY-LKMQQPEQALADCRRALELDGQSVKAHFFL 78 (281)
T ss_dssp CCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCccHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 567788888887776544 688999999999999999999999999755 458999999999999999888766555544
Q ss_pred HHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Q 015472 134 FLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS 213 (406)
Q Consensus 134 ~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~ 213 (406)
...+. ..++++.+...|++++...+........ .+|..+. ...+...........
T Consensus 79 g~~~~--------------~~g~~~~A~~~~~~al~l~p~~~~~~~~--~~~~~~~---------~~~~~~~~~~~~~~~ 133 (281)
T 2c2l_A 79 GQCQL--------------EMESYDEAIANLQRAYSLAKEQRLNFGD--DIPSALR---------IAKKKRWNSIEERRI 133 (281)
T ss_dssp HHHHH--------------HTTCHHHHHHHHHHHHHHHHHTTCCCCS--HHHHHHH---------HHHHHHHHHHHHTCC
T ss_pred HHHHH--------------HcCCHHHHHHHHHHHHHhCccchhhHHH--HHHHHHH---------HHHHHHHHHHHHHHH
Confidence 33221 1145667888888888754321111111 2333221 112222233333345
Q ss_pred cchHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 214 GAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 214 ~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
+....++..+..+. .|+++.|...|++++..
T Consensus 134 ~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~ 164 (281)
T 2c2l_A 134 HQESELHSYLTRLI--AAERERELEECQRNHEG 164 (281)
T ss_dssp CCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTT
T ss_pred hhhHHHHHHHHHHH--HHHHHHHHHHHHhhhcc
Confidence 66666666665553 58999999999999873
No 167
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.03 E-value=2.5e-05 Score=62.83 Aligned_cols=84 Identities=5% Similarity=-0.096 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHH
Q 015472 155 LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHIN 234 (406)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~ 234 (406)
+++..+...|++++.. .|.+...|...+.+....| +++.|...|++++...|+++..|...+......|+++
T Consensus 31 g~~~~A~~~~~~al~~-------~P~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~ 102 (121)
T 1hxi_A 31 ANLAEAALAFEAVCQK-------EPEREEAWRSLGLTQAENE-KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 102 (121)
T ss_dssp TCHHHHHHHHHHHHHH-------STTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3455666677777664 4556778889999988889 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 015472 235 EARSIYKRCYSK 246 (406)
Q Consensus 235 ~ar~l~~ral~~ 246 (406)
.|..+|++++..
T Consensus 103 ~A~~~~~~al~~ 114 (121)
T 1hxi_A 103 AALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHh
Confidence 999999999873
No 168
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.02 E-value=2.9e-05 Score=65.86 Aligned_cols=90 Identities=8% Similarity=-0.044 Sum_probs=72.0
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc--
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGD----------PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTL-- 71 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~----------~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~-- 71 (406)
++..|+.++...| ...+.|..+.......|. ++.|...|++||..+|.+.+.|...+..+...+
T Consensus 21 A~~~~~~Ai~l~P----~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l 96 (158)
T 1zu2_A 21 IRQDAENTYKSNP----LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL 96 (158)
T ss_dssp HHHHHHHHHHHCT----TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC----CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhccc
Confidence 6677888888887 356778887777666654 459999999999999999999999998776543
Q ss_pred --------chhhhHHHHHHHHHHhCCCCHHHHHH
Q 015472 72 --------KVGNVVRDVYSRATKNCPWVGELWVR 97 (406)
Q Consensus 72 --------~~~e~a~~vyerA~~~~P~~~~lW~~ 97 (406)
+..+.|...|++|+...|.+...|..
T Consensus 97 ~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a 130 (158)
T 1zu2_A 97 TPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS 130 (158)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 36789999999999999987654443
No 169
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.01 E-value=2.7e-05 Score=61.82 Aligned_cols=87 Identities=10% Similarity=0.045 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHH
Q 015472 158 SLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEAR 237 (406)
Q Consensus 158 ~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar 237 (406)
..+...|++++..- ...|....+|...+.+....| +++.|...|++++...|+++.+|..++......|+++.|.
T Consensus 7 ~~A~~~~~~al~~~----~~~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 7 AQAVPYYEKAIASG----LQGKDLAECYLGLGSTFRTLG-EYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp CCCHHHHHHHHSSC----CCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHcC----CCCccHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 34556666666531 002456678999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCC
Q 015472 238 SIYKRCYSKRFTG 250 (406)
Q Consensus 238 ~l~~ral~~~~~~ 250 (406)
.+|++++.. .|.
T Consensus 82 ~~~~~al~~-~p~ 93 (117)
T 3k9i_A 82 ELLLKIIAE-TSD 93 (117)
T ss_dssp HHHHHHHHH-HCC
T ss_pred HHHHHHHHh-CCC
Confidence 999999984 443
No 170
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.99 E-value=4e-05 Score=60.36 Aligned_cols=82 Identities=11% Similarity=0.002 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 015472 41 RVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSL 120 (406)
Q Consensus 41 ~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al 120 (406)
.+...|++++..+|.++.+|..++..+...+ ..+.|...|++|+...|.....|..++..+. ..+++++|...|++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHE-QFDAALPHLRAALDFDPTYSVAWKWLGKTLQ-GQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHH
Confidence 4678899999999999999999998776544 6788999999999999999999998887554 5789999999999998
Q ss_pred hCcc
Q 015472 121 LCAF 124 (406)
Q Consensus 121 ~~~~ 124 (406)
...+
T Consensus 81 ~~~~ 84 (115)
T 2kat_A 81 AAAQ 84 (115)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 8644
No 171
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.97 E-value=2.6e-05 Score=74.68 Aligned_cols=99 Identities=11% Similarity=-0.102 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHH-----------------HHHHHHHHHHHhcchhhhHHHHHHHH
Q 015472 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD-----------------LWLDYTQYLDKTLKVGNVVRDVYSRA 84 (406)
Q Consensus 22 ~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~-----------------lW~~Y~~~l~~~~~~~e~a~~vyerA 84 (406)
....|...+......|+++.|...|++|+..+|.+.. +|..++..+... +..+.|...|++|
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~-g~~~~A~~~~~~a 256 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKL-KRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTT-TCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 3456666666667789999999999999999887652 444444433322 2344455555555
Q ss_pred HHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 015472 85 TKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLC 122 (406)
Q Consensus 85 ~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~ 122 (406)
+...|.+..+|..++..+ ...+++++|...|++++..
T Consensus 257 l~~~p~~~~a~~~lg~a~-~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 257 LTEEEKNPKALFRRGKAK-AELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHHCTTCHHHHHHHHHHH-HTTTCHHHHHHHHHHTTC-
T ss_pred HHhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHH
Confidence 555554444444444422 2344445555555444443
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.95 E-value=0.00012 Score=73.14 Aligned_cols=104 Identities=12% Similarity=-0.068 Sum_probs=89.6
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHhcchhhhHHHHHHHHH
Q 015472 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS---------------SDLWLDYTQYLDKTLKVGNVVRDVYSRAT 85 (406)
Q Consensus 21 ~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~---------------~~lW~~Y~~~l~~~~~~~e~a~~vyerA~ 85 (406)
.....|...+......|+++.|...|++||..+|.+ ..+|..++..+... +..+.|...|++|+
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-g~~~~A~~~~~~al 344 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL-REYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHH
Confidence 456688888888889999999999999999999998 68999998877654 47899999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCcccc
Q 015472 86 KNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFST 126 (406)
Q Consensus 86 ~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~ 126 (406)
...|.+...|..++..+ ...+++++|...|++|+...|..
T Consensus 345 ~~~p~~~~a~~~~g~a~-~~~g~~~~A~~~~~~al~l~P~~ 384 (457)
T 1kt0_A 345 GLDSANEKGLYRRGEAQ-LLMNEFESAKGDFEKVLEVNPQN 384 (457)
T ss_dssp HHSTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHTTC---
T ss_pred hcCCccHHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCCC
Confidence 99999999999998855 45899999999999999987753
No 173
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.94 E-value=0.00053 Score=58.87 Aligned_cols=139 Identities=13% Similarity=0.076 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCcc------ccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHH
Q 015472 91 VGELWVRSLLSLERSRASEEEISTVFEKSLLCAF------STFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETF 164 (406)
Q Consensus 91 ~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~------~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f 164 (406)
...+|...+. +....+++++|...|++++.... .....+..+.. +... .+++..+...|
T Consensus 25 ~~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~-----~~~~---------~g~~~~A~~~~ 89 (203)
T 3gw4_A 25 ASGARFMLGY-VYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGM-----VERM---------AGNWDAARRCF 89 (203)
T ss_dssp HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-----HHHH---------TTCHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-----HHHH---------cCCHHHHHHHH
Confidence 3455555554 23346777777777777776211 11111111111 1101 14555677777
Q ss_pred HHHHHHHhhhhcCCc-hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc---ch---HHHHHHHHHHHHHcccHHHHH
Q 015472 165 QRASDYLSEQMKNTD-GLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG---AM---LEAWQSYISMEIELDHINEAR 237 (406)
Q Consensus 165 ~~a~~~l~~~~~~~~-~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~---~~---~~lW~~y~~~E~~~g~~~~ar 237 (406)
++++...... ...+ ....++...+.+....| +++.|...|++++...+ +. ..++...+......|+++.|.
T Consensus 90 ~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 167 (203)
T 3gw4_A 90 LEERELLASL-PEDPLAASANAYEVATVALHFG-DLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQ 167 (203)
T ss_dssp HHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHc-CccHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 7777765321 1111 23456677788888899 99999999999997632 21 234567777888899999999
Q ss_pred HHHHHHHhc
Q 015472 238 SIYKRCYSK 246 (406)
Q Consensus 238 ~l~~ral~~ 246 (406)
.+|++++..
T Consensus 168 ~~~~~al~~ 176 (203)
T 3gw4_A 168 QHWLRARDI 176 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999874
No 174
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.90 E-value=8.6e-05 Score=58.41 Aligned_cols=68 Identities=10% Similarity=-0.022 Sum_probs=62.3
Q ss_pred CchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 178 TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 178 ~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
.|....+|..++.+....| +++.|...|++++...|++...|..++......|+++.|+..|++++..
T Consensus 15 ~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 15 GTDNMLLRFTLGKTYAEHE-QFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp TCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3455678889999999999 9999999999999999999999999999999999999999999999974
No 175
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.90 E-value=0.0021 Score=56.56 Aligned_cols=182 Identities=12% Similarity=-0.070 Sum_probs=122.1
Q ss_pred hhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc---hhhhHHHH
Q 015472 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLK---VGNVVRDV 80 (406)
Q Consensus 4 ~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~---~~e~a~~v 80 (406)
+...|+.+.... +...+..........|+++.+...|++++.. .++..+..++.++.. ++ +.+.+...
T Consensus 5 A~~~~~~aa~~g------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 5 PGSQYQQQAEAG------DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp TTHHHHHHHHTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred HHHHHHHHHHCC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 456677777653 2445666666666689999999999999876 688899888877664 21 57889999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHH---ccCCHHHHHHHHHHHHhCccc--cHHHHHHHHHHHHHHHHHHHhccccchhhh
Q 015472 81 YSRATKNCPWVGELWVRSLLSLER---SRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVL 155 (406)
Q Consensus 81 yerA~~~~P~~~~lW~~y~~~lE~---~~~~~e~ar~if~~al~~~~~--~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~ 155 (406)
|++|+. +.....+..++..+.. ..+++++|...|++|+..++. ....+..+...+. .-.. ...
T Consensus 76 ~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~-----~g~g-----~~~ 143 (212)
T 3rjv_A 76 AEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYA-----SGVH-----GPE 143 (212)
T ss_dssp HHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHH-----HTSS-----SSC
T ss_pred HHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHH-----cCCC-----CCC
Confidence 999976 4556777777764432 157899999999999998762 2333333332221 1000 014
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHhcc
Q 015472 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMG-----KDMVSARGVWERLLKISG 214 (406)
Q Consensus 156 ~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~-----~d~~~Ar~ife~al~~~~ 214 (406)
++..+...|+++.+.. .....+..++.+..... .|+++|...|++++..-.
T Consensus 144 d~~~A~~~~~~A~~~~--------~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 144 DDVKASEYFKGSSSLS--------RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp CHHHHHHHHHHHHHTS--------CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 5567777888876641 11124445666655432 289999999999998843
No 176
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.89 E-value=0.0039 Score=61.81 Aligned_cols=82 Identities=10% Similarity=0.085 Sum_probs=34.7
Q ss_pred ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc---chhhhHHHHHHHHHHhCCCCHHHHHHHHHHHH--HccCCHHHH
Q 015472 38 DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTL---KVGNVVRDVYSRATKNCPWVGELWVRSLLSLE--RSRASEEEI 112 (406)
Q Consensus 38 ~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~---~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE--~~~~~~e~a 112 (406)
+.+.+...|++++...|.+...|..++.++..-. ++.+.+...|++|. |.+...+..++..+. ...++.++|
T Consensus 194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A 270 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQM 270 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHH
Confidence 4444455555555554444444444443332110 23344445555544 333444444443211 123444555
Q ss_pred HHHHHHHHhC
Q 015472 113 STVFEKSLLC 122 (406)
Q Consensus 113 r~if~~al~~ 122 (406)
...|++++..
T Consensus 271 ~~~~~~Aa~~ 280 (452)
T 3e4b_A 271 MKYLDNGRAA 280 (452)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHC
Confidence 5555554443
No 177
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.88 E-value=7e-05 Score=57.49 Aligned_cols=83 Identities=10% Similarity=0.098 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHc-cc
Q 015472 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA--MLEAWQSYISMEIEL-DH 232 (406)
Q Consensus 156 ~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~--~~~lW~~y~~~E~~~-g~ 232 (406)
++..+...|++++.. .+....+|..++.+....| +++.|...|++++...|+ ...+|...+...... |+
T Consensus 21 ~~~~A~~~~~~a~~~-------~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~ 92 (112)
T 2kck_A 21 NYTESIDLFEKAIQL-------DPEESKYWLMKGKALYNLE-RYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGK 92 (112)
T ss_dssp CHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSC
T ss_pred hHHHHHHHHHHHHHh-------CcCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCC
Confidence 445666677776654 2344567888888888888 899999999999999888 888999999998899 99
Q ss_pred HHHHHHHHHHHHhc
Q 015472 233 INEARSIYKRCYSK 246 (406)
Q Consensus 233 ~~~ar~l~~ral~~ 246 (406)
++.|..+|.+++..
T Consensus 93 ~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 93 EVEAEIAEARAKLE 106 (112)
T ss_dssp SHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999999873
No 178
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.88 E-value=3.7e-05 Score=73.56 Aligned_cols=117 Identities=10% Similarity=-0.016 Sum_probs=67.5
Q ss_pred hhhHHHHHHHhcCCCCChhhH-----------------HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 015472 3 NARAHLEEQISRQDLSDSEKF-----------------QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQ 65 (406)
Q Consensus 3 ~~R~~yE~~L~~~~~~~~~~~-----------------~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~ 65 (406)
.+...|+.+|...| ... .+|..++......|+++.|...|+++|..+|.+...|..++.
T Consensus 197 ~A~~~y~~Al~~~p----~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~ 272 (338)
T 2if4_A 197 EAMQQYEMAIAYMG----DDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGK 272 (338)
T ss_dssp HHHHHHHHHHHHSC----HHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc----cchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 35667888888776 122 378888888899999999999999999999999999999998
Q ss_pred HHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCcc
Q 015472 66 YLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAF 124 (406)
Q Consensus 66 ~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~ 124 (406)
.+... +..+.|...|++|+...|.+..+|..+........+..+.++.+|.+++...|
T Consensus 273 a~~~~-g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p 330 (338)
T 2if4_A 273 AKAEL-GQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKD 330 (338)
T ss_dssp HHHTT-TCHHHHHHHHHHTTC--------------------------------------
T ss_pred HHHHc-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 87754 47899999999999999998888888776434445667888899999887655
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.87 E-value=0.00022 Score=56.73 Aligned_cols=103 Identities=11% Similarity=0.024 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccch---HHHHHHHHHHHHHcc
Q 015472 155 LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM---LEAWQSYISMEIELD 231 (406)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~---~~lW~~y~~~E~~~g 231 (406)
+++..+...|++++...+ ..+.....+...+......| +++.|...|++++...|++ +..+...+......|
T Consensus 16 ~~~~~A~~~~~~~~~~~p----~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g 90 (129)
T 2xev_A 16 GKYDDASQLFLSFLELYP----NGVYTPNALYWLGESYYATR-NFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEG 90 (129)
T ss_dssp TCHHHHHHHHHHHHHHCS----SSTTHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHCC----CCcccHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcC
Confidence 455667777777766421 11212257778888888899 9999999999999999988 888999999999999
Q ss_pred cHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHH
Q 015472 232 HINEARSIYKRCYSKRFTGTGSEDICHAWLRFER 265 (406)
Q Consensus 232 ~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~ 265 (406)
+++.|..+|++++.. .|. ..........+..
T Consensus 91 ~~~~A~~~~~~~~~~-~p~--~~~~~~a~~~l~~ 121 (129)
T 2xev_A 91 KNTEAQQTLQQVATQ-YPG--SDAARVAQERLQS 121 (129)
T ss_dssp CHHHHHHHHHHHHHH-STT--SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-CCC--ChHHHHHHHHHHH
Confidence 999999999999984 553 3444444444433
No 180
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.87 E-value=0.0019 Score=71.62 Aligned_cols=190 Identities=12% Similarity=0.074 Sum_probs=105.9
Q ss_pred hcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHH
Q 015472 35 SSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEIST 114 (406)
Q Consensus 35 ~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~ 114 (406)
..|++++|..+++|+ .++.+|..|+......+ ..++|...|++| .+...|...+.+++ ..|+++++-.
T Consensus 1088 ~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G-~~kEAIdsYiKA-----dD~say~eVa~~~~-~lGkyEEAIe 1155 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKG-MVKEAIDSYIKA-----DDPSSYMEVVQAAN-TSGNWEELVK 1155 (1630)
T ss_pred HHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCC-CHHHHHHHHHhc-----CChHHHHHHHHHHH-HcCCHHHHHH
Confidence 345556666666554 67899999998877654 577899999887 55678888887775 4788999999
Q ss_pred HHHHHHhCccc-cHHHHHHHHHHHH---HHHHHHHhccccchh---hhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHH
Q 015472 115 VFEKSLLCAFS-TFEEYLDLFLTRI---DGLRRRILFSGEVEG---VLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAY 187 (406)
Q Consensus 115 if~~al~~~~~-~~~~~~~l~~~~~---~~l~Rr~~~~~~~e~---~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~ 187 (406)
.|..|.+..+. .++..+.+-.... +.+.. .+....... .++.-.-...|+.|..++.. ...|..
T Consensus 1156 yL~mArk~~~e~~Idt~LafaYAKl~rleele~-fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~k--------A~ny~r 1226 (1630)
T 1xi4_A 1156 YLQMARKKARESYVETELIFALAKTNRLAELEE-FINGPNNAHIQQVGDRCYDEKMYDAAKLLYNN--------VSNFGR 1226 (1630)
T ss_pred HHHHHHhhcccccccHHHHHHHHhhcCHHHHHH-HHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHh--------hhHHHH
Confidence 99888875432 1111111111110 10100 001000000 01100111223344443321 235556
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcc-------------------------chHHHHHHHHHHHHHcccHHHHHHHHHH
Q 015472 188 WAHLEQSMGKDMVSARGVWERLLKISG-------------------------AMLEAWQSYISMEIELDHINEARSIYKR 242 (406)
Q Consensus 188 ~a~~e~~~~~d~~~Ar~ife~al~~~~-------------------------~~~~lW~~y~~~E~~~g~~~~ar~l~~r 242 (406)
.+..+..+| +++.|..++.+|....+ .+++.....+.+....|.++.|..+|+.
T Consensus 1227 LA~tLvkLg-e~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1227 LASTLVHLG-EYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred HHHHHHHhC-CHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666666 67777777766632211 1222223555566778899999999998
Q ss_pred HHhc
Q 015472 243 CYSK 246 (406)
Q Consensus 243 al~~ 246 (406)
||..
T Consensus 1306 aL~L 1309 (1630)
T 1xi4_A 1306 ALGL 1309 (1630)
T ss_pred Hhcc
Confidence 8753
No 181
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.85 E-value=0.00027 Score=52.31 Aligned_cols=81 Identities=14% Similarity=0.065 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHH
Q 015472 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLL 100 (406)
Q Consensus 21 ~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~ 100 (406)
.....|...+......|+++.+...|++++...|.++.+|..++..+... +..+.|...|++|+...|.....|..++.
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 35667888888888899999999999999999999999999999877754 46788999999999999999888888776
Q ss_pred HH
Q 015472 101 SL 102 (406)
Q Consensus 101 ~l 102 (406)
.+
T Consensus 86 ~~ 87 (91)
T 1na3_A 86 AK 87 (91)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 182
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.84 E-value=0.00091 Score=68.64 Aligned_cols=165 Identities=10% Similarity=0.089 Sum_probs=113.8
Q ss_pred hhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCC---------HHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHH
Q 015472 73 VGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRAS---------EEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRR 143 (406)
Q Consensus 73 ~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~---------~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~R 143 (406)
-.++|...+++|+..+|....+|......+.....+ ++++...+++++...|...+. |.-+.-.+ .
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~a----W~hR~w~l-~ 118 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGT----WHHRCWLL-S 118 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHH----HHHHHHHH-H
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHH----HHHHHHHH-H
Confidence 347899999999999999999999888766653332 788888889988876653222 21111011 0
Q ss_pred HHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHH
Q 015472 144 RILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSY 223 (406)
Q Consensus 144 r~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y 223 (406)
++ .. .++......++++++. .+.+...|..-+-+...++...+.+...+++++..+|++...|..-
T Consensus 119 ~l-~~------~~~~~el~~~~k~l~~-------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r 184 (567)
T 1dce_A 119 RL-PE------PNWARELELCARFLEA-------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYR 184 (567)
T ss_dssp TC-SS------CCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHH
T ss_pred Hc-cc------ccHHHHHHHHHHHHhh-------ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHH
Confidence 11 00 0223444555555553 4566778887666666676568899999999999999999999887
Q ss_pred HHHHHHc--------------ccHHHHHHHHHHHHhcccCCCChHHHHHH
Q 015472 224 ISMEIEL--------------DHINEARSIYKRCYSKRFTGTGSEDICHA 259 (406)
Q Consensus 224 ~~~E~~~--------------g~~~~ar~l~~ral~~~~~~~~~~~i~~~ 259 (406)
....... +.++++..++.+|+.. -|.+ ...|.-
T Consensus 185 ~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~-~P~~--~saW~y 231 (567)
T 1dce_A 185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-DPND--QSAWFY 231 (567)
T ss_dssp HHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH-CSSC--SHHHHH
T ss_pred HHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh-CCCC--ccHHHH
Confidence 7766553 5678999999999974 4543 455554
No 183
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=97.81 E-value=0.0013 Score=57.42 Aligned_cols=102 Identities=11% Similarity=0.241 Sum_probs=79.4
Q ss_pred HHHHHHHHHHh--hhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-ccc-hHHHHHHHHHHHHHcccHHHHH
Q 015472 162 ETFQRASDYLS--EQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-SGA-MLEAWQSYISMEIELDHINEAR 237 (406)
Q Consensus 162 ~~f~~a~~~l~--~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~-~~~-~~~lW~~y~~~E~~~g~~~~ar 237 (406)
.++++|+..+. +.+.+.+..+++|+.||++. ..+ +...++.+|.-+... .|. .+.+|..|+.+....|++..|.
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~-~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~ 135 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSN-NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAK 135 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STT-CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-ccc-ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 67777777553 23345566789999999765 123 477899999999987 454 5789999999999999999999
Q ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHh
Q 015472 238 SIYKRCYSKRFTGTGSEDICHAWLRFEREY 267 (406)
Q Consensus 238 ~l~~ral~~~~~~~~~~~i~~~~i~fE~~~ 267 (406)
.||+.|+...- .....|-.++-.|+.+.
T Consensus 136 ~Vy~~GI~~~A--~P~~rL~~~~~~F~~R~ 163 (202)
T 3esl_A 136 VLLELGAENNC--RPYNRLLRSLSNYEDRL 163 (202)
T ss_dssp HHHHHHHHTTC--BSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--ccHHHHHHHHHHHHHHH
Confidence 99999998632 22578889999998774
No 184
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.81 E-value=0.0019 Score=55.21 Aligned_cols=164 Identities=9% Similarity=0.020 Sum_probs=101.8
Q ss_pred cCChhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhC------CCCHHHHHHHHHHHHHccCC
Q 015472 36 SGDPGRVQLLYERAITDFP-VSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC------PWVGELWVRSLLSLERSRAS 108 (406)
Q Consensus 36 ~g~~~~~~~lyEral~~~P-~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~------P~~~~lW~~y~~~lE~~~~~ 108 (406)
.|+++.+..+++.... +| ....+|...+...... +..+.+...|++|+..+ |....+|...+..+ ...++
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~-~~~g~ 81 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPATASGARFMLGYVYAFM-DRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVE-RMAGN 81 (203)
T ss_dssp --CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH-HHTTC
T ss_pred cccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH-HHcCC
Confidence 5777888775544443 44 5667777777666554 46788999999999843 33345666666533 45899
Q ss_pred HHHHHHHHHHHHhC---ccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHH
Q 015472 109 EEEISTVFEKSLLC---AFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLY 185 (406)
Q Consensus 109 ~e~ar~if~~al~~---~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~ 185 (406)
+++|...|.+++.. .++........+.. ...+... .+++..+...|++++...... .........+
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-lg~~~~~---------~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~ 150 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYE-VATVALH---------FGDLAGARQEYEKSLVYAQQA-DDQVAIACAF 150 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH-HHHHHHH---------HTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHH-HHHHHHH---------hCCHHHHHHHHHHHHHHHHhc-cchHHHHHHH
Confidence 99999999999985 22121111111110 1111111 145667888888888764321 1111223456
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Q 015472 186 AYWAHLEQSMGKDMVSARGVWERLLKISG 214 (406)
Q Consensus 186 ~~~a~~e~~~~~d~~~Ar~ife~al~~~~ 214 (406)
...+.+....| +++.|...|++++....
T Consensus 151 ~~la~~~~~~g-~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 151 RGLGDLAQQEK-NLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCc-CHHHHHHHHHHHHHHHH
Confidence 67788888899 99999999999998853
No 185
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=97.80 E-value=0.00072 Score=56.55 Aligned_cols=82 Identities=12% Similarity=0.170 Sum_probs=64.1
Q ss_pred cCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-ccc-hHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCCh
Q 015472 176 KNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-SGA-MLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGS 253 (406)
Q Consensus 176 ~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~-~~~-~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~ 253 (406)
.+.+..+++|+.|+++ .. + ++.+|.-+... .|. .+.+|..|+.+....|++..|..||+.+++.. . ...
T Consensus 65 knD~RyLklWl~ya~~---~~-d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~-A-~P~ 135 (152)
T 4a1g_A 65 HNDPRFISYCLKFAEY---NS-D---LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ-A-EPR 135 (152)
T ss_dssp TTCHHHHHHHHHHHTT---BS-C---HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-C-BSH
T ss_pred cCCHHHHHHHHHHHHh---cC-C---HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C-ccH
Confidence 3445568899999854 23 3 78899988877 444 57799999999999999999999999999863 2 225
Q ss_pred HHHHHHHHHHHHH
Q 015472 254 EDICHAWLRFERE 266 (406)
Q Consensus 254 ~~i~~~~i~fE~~ 266 (406)
+.|-.++-.|..+
T Consensus 136 ~rL~~~~~~F~~R 148 (152)
T 4a1g_A 136 EFLQQQYRLFQTR 148 (152)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 6788888888765
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.79 E-value=0.00049 Score=57.55 Aligned_cols=91 Identities=19% Similarity=0.156 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcC-----------CchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHH
Q 015472 155 LDYSLIRETFQRASDYLSEQMKN-----------TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSY 223 (406)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~~-----------~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y 223 (406)
+++..+...|.+++..+...... .+....+|...+.....+| +++.|...|++++...|+++..|...
T Consensus 25 ~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~-~~~~A~~~~~~al~~~p~~~~a~~~~ 103 (162)
T 3rkv_A 25 KDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIG-DLHEAEETSSEVLKREETNEKALFRR 103 (162)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 45667788888888875322110 2334568888899999999 99999999999999999999999999
Q ss_pred HHHHHHcccHHHHHHHHHHHHhc
Q 015472 224 ISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 224 ~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
+......|+++.|...|++++..
T Consensus 104 g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 104 AKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHHHHhc
Confidence 99999999999999999999974
No 187
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.75 E-value=0.0062 Score=57.29 Aligned_cols=209 Identities=11% Similarity=-0.021 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCC--CCHHHHHHHHH
Q 015472 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCP--WVGELWVRSLL 100 (406)
Q Consensus 23 ~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P--~~~~lW~~y~~ 100 (406)
......|..|.. +. +...|++.+...+.+.....-.+..+... ++.+.|..++.+++...| .+..+....+.
T Consensus 71 ~~a~~~la~~~~--~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~~-g~~eeAL~~l~~~i~~~~~~~~lea~~l~vq 144 (310)
T 3mv2_B 71 GKVLDLYVQFLD--TK---NIEELENLLKDKQNSPYELYLLATAQAIL-GDLDKSLETCVEGIDNDEAEGTTELLLLAIE 144 (310)
T ss_dssp HHHHHHHHHHHT--TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHhccCCCcCcHHHHHHHHH
Confidence 334555555553 11 56677777766555666666455544443 578899999999988887 66778877776
Q ss_pred HHHHccCCHHHHHHHHHHHHhCccc----cHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhc
Q 015472 101 SLERSRASEEEISTVFEKSLLCAFS----TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMK 176 (406)
Q Consensus 101 ~lE~~~~~~e~ar~if~~al~~~~~----~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~ 176 (406)
.+ ...++.+.|+++|+++....++ .-...+.+...|+.... .+ .++..+..+|+++.+..
T Consensus 145 i~-L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~---g~-------~~~q~A~~~f~El~~~~----- 208 (310)
T 3mv2_B 145 VA-LLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFAT---NK-------ETATSNFYYYEELSQTF----- 208 (310)
T ss_dssp HH-HHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH---TC-------STTTHHHHHHHHHHTTS-----
T ss_pred HH-HHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHh---CC-------ccHHHHHHHHHHHHHhC-----
Confidence 43 4589999999999998887652 11223344445543321 11 12335567777765432
Q ss_pred CCch---HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh----------ccchHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 015472 177 NTDG---LLRLYAYWAHLEQSMGKDMVSARGVWERLLKI----------SGAMLEAWQSYISMEIELDHINEARSIYKRC 243 (406)
Q Consensus 177 ~~~~---~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~----------~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ra 243 (406)
++ ..-+|. ....+| +++.|..+++.+++. .|+++++-...|.+....|+ .|..++.++
T Consensus 209 --p~~~~~~lLln----~~~~~g-~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL 279 (310)
T 3mv2_B 209 --PTWKTQLGLLN----LHLQQR-NIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQL 279 (310)
T ss_dssp --CSHHHHHHHHH----HHHHHT-CHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHH
T ss_pred --CCcccHHHHHH----HHHHcC-CHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence 22 122333 567788 999999999987776 37789999899988888887 888999999
Q ss_pred HhcccCCCChHHHHHHHHHHHHH
Q 015472 244 YSKRFTGTGSEDICHAWLRFERE 266 (406)
Q Consensus 244 l~~~~~~~~~~~i~~~~i~fE~~ 266 (406)
... .|. ..+...+..-+..
T Consensus 280 ~~~-~P~---hp~i~d~~~k~~~ 298 (310)
T 3mv2_B 280 VKL-DHE---HAFIKHHQEIDAK 298 (310)
T ss_dssp HHT-TCC---CHHHHHHHHHHHH
T ss_pred HHh-CCC---ChHHHHHHHHHHH
Confidence 874 332 2344444444433
No 188
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.75 E-value=0.00031 Score=56.72 Aligned_cols=84 Identities=11% Similarity=0.111 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchH-------HHHHHHHHHH
Q 015472 155 LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAML-------EAWQSYISME 227 (406)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~-------~lW~~y~~~E 227 (406)
++++.+...|++|++. .|....+|...+.....+| +++.|...|++++...|++. .+|...+...
T Consensus 22 ~~~~~A~~~y~~Al~~-------~p~~~~~~~nlg~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~ 93 (127)
T 4gcn_A 22 KDFEKAHVHYDKAIEL-------DPSNITFYNNKAAVYFEEK-KFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAF 93 (127)
T ss_dssp TCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------CCCCHHHHHhHHHHHHHhh-hHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 4556677777777665 3455668888888888888 89999999999998866432 3566666777
Q ss_pred HHcccHHHHHHHHHHHHhc
Q 015472 228 IELDHINEARSIYKRCYSK 246 (406)
Q Consensus 228 ~~~g~~~~ar~l~~ral~~ 246 (406)
...|+++.|...|++++..
T Consensus 94 ~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 94 QKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhh
Confidence 7888999999999999873
No 189
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.74 E-value=0.00097 Score=52.33 Aligned_cols=122 Identities=10% Similarity=-0.028 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHH
Q 015472 56 SSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFL 135 (406)
Q Consensus 56 ~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~ 135 (406)
....|...+...... +..+.|...|++++...|.+..+|..++..+ ...+++++|...|++++...+..
T Consensus 3 ~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~~~~~~~~~--------- 71 (131)
T 1elr_A 3 QALKEKELGNDAYKK-KDFDTALKHYDKAKELDPTNMTYITNQAAVY-FEKGDYNKCRELCEKAIEVGREN--------- 71 (131)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHS---------
T ss_pred HHHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCccHHHHHHHHHHH-HHhccHHHHHHHHHHHHhhcccc---------
Confidence 345666666655543 3567788888888887777777777777643 34677777777777666532210
Q ss_pred HHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Q 015472 136 TRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA 215 (406)
Q Consensus 136 ~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~ 215 (406)
.........++...+.+....| +++.|...|++++...|
T Consensus 72 ---------------------------------------~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~- 110 (131)
T 1elr_A 72 ---------------------------------------REDYRQIAKAYARIGNSYFKEE-KYKDAIHFYNKSLAEHR- 110 (131)
T ss_dssp ---------------------------------------TTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCC-
T ss_pred ---------------------------------------chhHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCC-
Confidence 0000011345666777777888 99999999999999988
Q ss_pred hHHHHHHHHHHHHH
Q 015472 216 MLEAWQSYISMEIE 229 (406)
Q Consensus 216 ~~~lW~~y~~~E~~ 229 (406)
++.++..+......
T Consensus 111 ~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 111 TPDVLKKCQQAEKI 124 (131)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 47777666655443
No 190
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.71 E-value=0.0027 Score=51.46 Aligned_cols=140 Identities=10% Similarity=-0.062 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCccc--cHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHH
Q 015472 94 LWVRSLLSLERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYL 171 (406)
Q Consensus 94 lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~--~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l 171 (406)
+|...+..+ ...++++++...|.+++...+. ........+.. ...+.. ..+++..+...|++++...
T Consensus 11 ~~~~l~~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-l~~~~~---------~~g~~~~A~~~~~~a~~~~ 79 (164)
T 3ro3_A 11 AFGNLGNTH-YLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSN-LGNAYI---------FLGEFETASEYYKKTLLLA 79 (164)
T ss_dssp HHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHHH---------HTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHH-HHHHHH---------HcCCHHHHHHHHHHHHHHH
Confidence 444444423 3467888888888888875321 11111111110 111110 1145567777888887765
Q ss_pred hhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc---c---hHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 015472 172 SEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG---A---MLEAWQSYISMEIELDHINEARSIYKRCYS 245 (406)
Q Consensus 172 ~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~---~---~~~lW~~y~~~E~~~g~~~~ar~l~~ral~ 245 (406)
... ...+....++..++.+....| +++.|...|++++...+ + ...++...+......|+++.|..+|++++.
T Consensus 80 ~~~-~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 80 RQL-KDRAVEAQSCYSLGNTYTLLQ-DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHT-TCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHh-CCcHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 322 111223456777888888899 99999999999998742 2 235677777888889999999999999987
Q ss_pred c
Q 015472 246 K 246 (406)
Q Consensus 246 ~ 246 (406)
.
T Consensus 158 ~ 158 (164)
T 3ro3_A 158 I 158 (164)
T ss_dssp H
T ss_pred H
Confidence 3
No 191
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.70 E-value=0.00015 Score=55.90 Aligned_cols=67 Identities=12% Similarity=0.052 Sum_probs=61.2
Q ss_pred chHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 179 DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 179 ~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
|....+|..++......| +++.|...|++++...|+++.+|...+......|+++.|...|++++..
T Consensus 4 p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHD-NASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345668888999999999 9999999999999999999999999999999999999999999999974
No 192
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.68 E-value=0.00084 Score=49.55 Aligned_cols=65 Identities=15% Similarity=0.181 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 181 ~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
....|...+......+ +++.|...|++++...|+++.+|..++......|+++.|..+|++++..
T Consensus 8 ~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQG-DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4557777888888888 9999999999999999999999999999999999999999999999984
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.0005 Score=52.86 Aligned_cols=78 Identities=14% Similarity=0.002 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCC------HHHH
Q 015472 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV------GELW 95 (406)
Q Consensus 22 ~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~------~~lW 95 (406)
....|...+......|+++.+...|++++...|.++.+|..++..+... +..+.|...|++|+...|.. ..++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKL-GEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 3567888888888889999999999999999999999999998877654 46788999999999999987 4555
Q ss_pred HHHHH
Q 015472 96 VRSLL 100 (406)
Q Consensus 96 ~~y~~ 100 (406)
...+.
T Consensus 82 ~~~~~ 86 (111)
T 2l6j_A 82 YRLEL 86 (111)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54444
No 194
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.66 E-value=8.4e-05 Score=74.66 Aligned_cols=85 Identities=13% Similarity=-0.047 Sum_probs=38.6
Q ss_pred cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHH
Q 015472 36 SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTV 115 (406)
Q Consensus 36 ~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~i 115 (406)
.|+++.|...|++|+..+|.+..+|..++..+...+ ..+.|...|++|+...|.....|..++..+ ...+++++|...
T Consensus 19 ~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~lg~~~-~~~g~~~eA~~~ 96 (477)
T 1wao_1 19 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE-CYGYALGDATRAIELDKKYIKGYYRRAASN-MALGKFRAALRD 96 (477)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHSCTTCHHHHHHHHHHH-HHHTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHHHHH
Confidence 344444444444444444444444444444433322 344444444444444444444444444322 224444444444
Q ss_pred HHHHHhC
Q 015472 116 FEKSLLC 122 (406)
Q Consensus 116 f~~al~~ 122 (406)
|++|+..
T Consensus 97 ~~~al~~ 103 (477)
T 1wao_1 97 YETVVKV 103 (477)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4444443
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.65 E-value=0.00038 Score=67.42 Aligned_cols=102 Identities=12% Similarity=-0.095 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHh----------------cCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHH
Q 015472 23 FQQYMIYLKYEQSSGDPGRVQLLYERAIT----------------DFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATK 86 (406)
Q Consensus 23 ~~~w~~Yi~~E~~~g~~~~~~~lyEral~----------------~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~ 86 (406)
...|...+......|+++.|...|++||. ..|.+..+|..++..+... +..+.|...|++|+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM-SDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHH
Confidence 34577777778889999999999999998 6778889999999877654 478899999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCcccc
Q 015472 87 NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFST 126 (406)
Q Consensus 87 ~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~ 126 (406)
..|....+|..++..+. ..+++++|...|++|+...|..
T Consensus 302 ~~p~~~~a~~~lg~~~~-~~g~~~eA~~~l~~Al~l~P~~ 340 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQ-GLKEYDQALADLKKAQEIAPED 340 (370)
T ss_dssp TCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTC
T ss_pred hCchhHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCC
Confidence 99999999999988554 5899999999999999977653
No 196
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.64 E-value=0.014 Score=64.83 Aligned_cols=239 Identities=9% Similarity=0.004 Sum_probs=134.5
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHH
Q 015472 7 HLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATK 86 (406)
Q Consensus 7 ~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~ 86 (406)
.|++++.-.... ....+|..|+......|.++.|...|++| .+++.|..-+.++.+.+ ..+.+...|..|..
T Consensus 1091 nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lG-kyEEAIeyL~mArk 1162 (1630)
T 1xi4_A 1091 NLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSG-NWEELVKYLQMARK 1162 (1630)
T ss_pred hHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcC-CHHHHHHHHHHHHh
Confidence 345554443211 24668999999999999999999999887 78889999888888654 67889999988877
Q ss_pred hCCCC-HHH--------------------------HHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHH-
Q 015472 87 NCPWV-GEL--------------------------WVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRI- 138 (406)
Q Consensus 87 ~~P~~-~~l--------------------------W~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~- 138 (406)
..+.+ ... |...+..++ ..+.+++|..+|.+|- .|..+....+
T Consensus 1163 ~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le-~eg~YeeA~~~Y~kA~--------ny~rLA~tLvk 1233 (1630)
T 1xi4_A 1163 KARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCY-DEKMYDAAKLLYNNVS--------NFGRLASTLVH 1233 (1630)
T ss_pred hcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHH-hcCCHHHHHHHHHhhh--------HHHHHHHHHHH
Confidence 66432 122 222333232 2344444444444431 0111110000
Q ss_pred ----H---HHHHHHhccccchhhhhHHH---HHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 015472 139 ----D---GLRRRILFSGEVEGVLDYSL---IRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWER 208 (406)
Q Consensus 139 ----~---~l~Rr~~~~~~~e~~~~~~~---~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~ 208 (406)
+ ...|++... ..|.++.. -..-|..|..+.-. +..++. .....+.++...| .++.|..+|+.
T Consensus 1234 Lge~q~AIEaarKA~n~---~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~d---eLeeli~yYe~~G-~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1234 LGEYQAAVDGARKANST---RTWKEVCFACVDGKEFRLAQMCGLH-IVVHAD---ELEELINYYQDRG-YFEELITMLEA 1305 (1630)
T ss_pred hCCHHHHHHHHHHhCCH---HHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHH---HHHHHHHHHHHcC-CHHHHHHHHHH
Confidence 0 000111000 00110000 00112222222110 101111 1224455556778 89999999999
Q ss_pred HHHhccchHHHHHHHHHHHHHc--ccHHHHHHHHHHHHhcccCC----CChHHHHHHHHHHHHHhCCHHH
Q 015472 209 LLKISGAMLEAWQSYISMEIEL--DHINEARSIYKRCYSKRFTG----TGSEDICHAWLRFEREYGTLED 272 (406)
Q Consensus 209 al~~~~~~~~lW~~y~~~E~~~--g~~~~ar~l~~ral~~~~~~----~~~~~i~~~~i~fE~~~G~~e~ 272 (406)
++...+.++.+|..++.+..+. +.+-.+..+|...+.. |. -....+|..++-+=.++|..+.
T Consensus 1306 aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini--~k~~r~~e~~~lW~elv~LY~~~~e~dn 1373 (1630)
T 1xi4_A 1306 ALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNI--PKVLRAAEQAHLWAELVFLYDKYEEYDN 1373 (1630)
T ss_pred HhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhccc--chHhHHHHHHHHHHHHHHHHHhcccHHH
Confidence 9999988888887777776665 4666666677765542 21 0124678888888778888664
No 197
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.64 E-value=0.0085 Score=59.32 Aligned_cols=177 Identities=11% Similarity=0.017 Sum_probs=114.2
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc--chhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc----CCHHHHH
Q 015472 40 GRVQLLYERAITDFPVSSDLWLDYTQYLDKTL--KVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSR----ASEEEIS 113 (406)
Q Consensus 40 ~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~--~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~----~~~e~ar 113 (406)
+.+..++..+...+|. .+..++..+...+ .+.+.+...|++|+...|.....|..++..+. .. .++++|.
T Consensus 162 ~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~-~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 162 DDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLG-DATLGTPDEKTAQ 237 (452)
T ss_dssp HHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHT-CGGGSSCCHHHHH
T ss_pred HHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCCCCCHHHHH
Confidence 3445556665555444 6777776655432 15678999999999988888887766666443 23 6889999
Q ss_pred HHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHH
Q 015472 114 TVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQ 193 (406)
Q Consensus 114 ~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~ 193 (406)
..|+++. +.....+..+...+.. +. ...++..+...|+++.+. . ....+..++.+..
T Consensus 238 ~~~~~aa---~g~~~a~~~Lg~~~~~-------~~----~~~d~~~A~~~~~~Aa~~-------g--~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 238 ALLEKIA---PGYPASWVSLAQLLYD-------FP----ELGDVEQMMKYLDNGRAA-------D--QPRAELLLGKLYY 294 (452)
T ss_dssp HHHHHHG---GGSTHHHHHHHHHHHH-------SG----GGCCHHHHHHHHHHHHHT-------T--CHHHHHHHHHHHH
T ss_pred HHHHHHc---CCCHHHHHHHHHHHHh-------CC----CCCCHHHHHHHHHHHHHC-------C--CHHHHHHHHHHHH
Confidence 9999998 3333333333322110 00 124556677777777643 1 2234555666555
Q ss_pred Hc---CCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHH----cccHHHHHHHHHHHHhc
Q 015472 194 SM---GKDMVSARGVWERLLKISGAMLEAWQSYISMEIE----LDHINEARSIYKRCYSK 246 (406)
Q Consensus 194 ~~---~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~----~g~~~~ar~l~~ral~~ 246 (406)
.- ..|+.+|...|++++ +.++..+.....+... ..+++.|..+|++|...
T Consensus 295 ~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 295 EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 31 138999999999999 6677777777766655 23899999999999874
No 198
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.61 E-value=0.00075 Score=57.16 Aligned_cols=91 Identities=14% Similarity=-0.011 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhhc----C-CchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-------ccchHHHH--
Q 015472 155 LDYSLIRETFQRASDYLSEQMK----N-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-------SGAMLEAW-- 220 (406)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~----~-~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~-------~~~~~~lW-- 220 (406)
++++.+...|++|+.+.+..+. . .+....+|.+.+.....+| +++.|...|+++|.. +|++...|
T Consensus 25 g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lg-r~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~ 103 (159)
T 2hr2_A 25 GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR-SFDEALHSADKALHYFNRRGELNQDEGKLWIS 103 (159)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhhhccccCCCchHHHHHH
Confidence 5677888999999987533110 0 1112348888999999999 999999999999999 99999999
Q ss_pred --HHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 221 --QSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 221 --~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
..-+......|+++.|...|++|+..
T Consensus 104 ~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 104 AVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999984
No 199
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.0074 Score=58.38 Aligned_cols=195 Identities=11% Similarity=0.011 Sum_probs=129.6
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCHH-----------------HHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHH---
Q 015472 34 QSSGDPGRVQLLYERAITDFPVSSD-----------------LWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGE--- 93 (406)
Q Consensus 34 ~~~g~~~~~~~lyEral~~~P~~~~-----------------lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~--- 93 (406)
.+.|+++.|...|..++...|...+ .....+..+... +..+.+...|.+++...+....
T Consensus 15 ~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~-~~~~~a~~~~~~~~~~~~~~~~~~~ 93 (434)
T 4b4t_Q 15 VNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTM-GAKDKLREFIPHSTEYMMQFAKSKT 93 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHTHHHHHTSCHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHccchHH
Confidence 4468999999999999999886543 244555555544 3678899999999876654322
Q ss_pred ---HHHHHHHHHHHccCCHHHHHHHHHHHHhCccc-----c-HHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHH
Q 015472 94 ---LWVRSLLSLERSRASEEEISTVFEKSLLCAFS-----T-FEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETF 164 (406)
Q Consensus 94 ---lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~-----~-~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f 164 (406)
+.... ..+....++.+.+..++..++..... . ...+..+...+ ...+++..+...+
T Consensus 94 ~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~--------------~~~g~~~~A~~~l 158 (434)
T 4b4t_Q 94 VKVLKTLI-EKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLH--------------YQKKQYKDSLALI 158 (434)
T ss_dssp HHHHHHHH-HHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHH--------------HHHTCHHHHHHHH
T ss_pred HHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH--------------HHccChHHHHHHH
Confidence 22222 22334467899999999999874221 1 11111111111 1124566677777
Q ss_pred HHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---cch----HHHHHHHHHHHHHcccHHHHH
Q 015472 165 QRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS---GAM----LEAWQSYISMEIELDHINEAR 237 (406)
Q Consensus 165 ~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~---~~~----~~lW~~y~~~E~~~g~~~~ar 237 (406)
+++...+... ...+....++...+++....| ++.+|+.+|.+++... ++. ..++...+.+....|++..|.
T Consensus 159 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~ 236 (434)
T 4b4t_Q 159 NDLLREFKKL-DDKPSLVDVHLLESKVYHKLR-NLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAF 236 (434)
T ss_dssp HHHHHHHTTS-SCSTHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHH
T ss_pred HHHHHHHHhc-ccchhHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 7776654321 123345678888899999999 9999999999999873 222 346666677777789999999
Q ss_pred HHHHHHHhc
Q 015472 238 SIYKRCYSK 246 (406)
Q Consensus 238 ~l~~ral~~ 246 (406)
..|..++..
T Consensus 237 ~~~~~a~~~ 245 (434)
T 4b4t_Q 237 SYFFESFES 245 (434)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998863
No 200
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.54 E-value=0.00047 Score=69.16 Aligned_cols=113 Identities=12% Similarity=-0.177 Sum_probs=87.8
Q ss_pred hhhHHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHH
Q 015472 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (406)
Q Consensus 3 ~~R~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vye 82 (406)
+|...|+.+|...| .....|..++......|+++.|...|++|+..+|.++..|..++..+...+ ..+.|...|+
T Consensus 24 ~A~~~~~~Al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g-~~~eA~~~~~ 98 (477)
T 1wao_1 24 NAIKFYSQAIELNP----SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG-KFRAALRDYE 98 (477)
T ss_dssp HHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC----ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHH
Confidence 35678899998876 357789999999999999999999999999999999999999998777654 6889999999
Q ss_pred HHHHhCCCCHHHHHHHHHHH-HHccCCHHHHHHHHHHHH
Q 015472 83 RATKNCPWVGELWVRSLLSL-ERSRASEEEISTVFEKSL 120 (406)
Q Consensus 83 rA~~~~P~~~~lW~~y~~~l-E~~~~~~e~ar~if~~al 120 (406)
+|+...|.....|..+.... ....+++++|..+|++..
T Consensus 99 ~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~ 137 (477)
T 1wao_1 99 TVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 137 (477)
T ss_dssp HHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 99999999888887776531 123455666666665533
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.54 E-value=0.00013 Score=56.18 Aligned_cols=68 Identities=7% Similarity=-0.040 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 015472 53 FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLC 122 (406)
Q Consensus 53 ~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~ 122 (406)
+|.++.+|..++..+... +..+.|...|++|+...|....+|..++..+. ..+++++|...|++++..
T Consensus 3 ~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKH-DNASRALALFEELVETDPDYVGTYYHLGKLYE-RLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp --CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Confidence 456666666666554433 24555666666666666666666666555332 356666666666666654
No 202
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.52 E-value=0.00094 Score=61.95 Aligned_cols=118 Identities=12% Similarity=0.087 Sum_probs=89.5
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHHH--Hh-cCC------hhHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHh----c
Q 015472 7 HLEEQISRQDLSDSEKFQQYMIYLKYE--QS-SGD------PGRVQLLYERAITDFPV--SSDLWLDYTQYLDKT----L 71 (406)
Q Consensus 7 ~yE~~L~~~~~~~~~~~~~w~~Yi~~E--~~-~g~------~~~~~~lyEral~~~P~--~~~lW~~Y~~~l~~~----~ 71 (406)
.++.+|.+....+++ .-+|..-+... .. .|+ ...++..++|||..+|. +...|..++.+.... +
T Consensus 139 ~~~~~l~~~~~~dve-~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~g 217 (301)
T 3u64_A 139 RLHKVLSRCTRVDVG-TLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFG 217 (301)
T ss_dssp HHHHHHTTCCGGGHH-HHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTT
T ss_pred hHHHHHHHcCccccH-HHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccC
Confidence 456666666432332 33776644332 22 243 35789999999999999 677999999887653 3
Q ss_pred chhhhHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccc
Q 015472 72 KVGNVVRDVYSRATKNCPWV-GELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (406)
Q Consensus 72 ~~~e~a~~vyerA~~~~P~~-~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~ 125 (406)
++.+.|+..|+||+...|.. ...+..|+.++-...++.+.+...+++++..++.
T Consensus 218 Gd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 57899999999999999964 8999999998765569999999999999998764
No 203
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.51 E-value=0.00037 Score=67.53 Aligned_cols=98 Identities=9% Similarity=-0.113 Sum_probs=80.4
Q ss_pred hhHHHHHHHhcCCC------------CChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 015472 4 ARAHLEEQISRQDL------------SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTL 71 (406)
Q Consensus 4 ~R~~yE~~L~~~~~------------~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~ 71 (406)
|...|+.+|...+. .++....+|..++......|+++.|...|++||..+|.++..|..++..+...
T Consensus 242 Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~- 320 (370)
T 1ihg_A 242 AIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGL- 320 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHc-
Confidence 45667777762110 12356778999999899999999999999999999999999999999877754
Q ss_pred chhhhHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015472 72 KVGNVVRDVYSRATKNCPWVGELWVRSLLSL 102 (406)
Q Consensus 72 ~~~e~a~~vyerA~~~~P~~~~lW~~y~~~l 102 (406)
+..+.|...|++|+...|....+|..+...+
T Consensus 321 g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 321 KEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4789999999999999999999888877643
No 204
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.46 E-value=0.0003 Score=53.38 Aligned_cols=64 Identities=17% Similarity=0.028 Sum_probs=55.2
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHH
Q 015472 32 YEQSSGDPGRVQLLYERAITDFPVSSD-LWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWV 96 (406)
Q Consensus 32 ~E~~~g~~~~~~~lyEral~~~P~~~~-lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~ 96 (406)
.....|+++.+...|++++..+|.++. +|..++..+...+ ..+.|...|++|+...|....+|.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~ 73 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLG-DWQKALNNYQSAIELNPDSPALQA 73 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcHHHHH
Confidence 344578999999999999999999999 9999998776544 678899999999999999888773
No 205
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.42 E-value=0.0016 Score=57.75 Aligned_cols=97 Identities=10% Similarity=0.165 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHh--hhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-ccc-hHHHHHHHHHHHHHcccHHH
Q 015472 160 IRETFQRASDYLS--EQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-SGA-MLEAWQSYISMEIELDHINE 235 (406)
Q Consensus 160 ~r~~f~~a~~~l~--~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~-~~~-~~~lW~~y~~~E~~~g~~~~ 235 (406)
+..++++|+..+. +.+.+.+..+++|+.|+++ .. .++.+|..+... .|. ...+|..|+.+....|++..
T Consensus 96 L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~---~~----~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~ 168 (223)
T 4aez_C 96 LVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY---ID----EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQK 168 (223)
T ss_dssp HHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT---CS----CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc---cC----CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHH
Confidence 3456677776542 2334556678999999964 22 567899988887 454 57899999999999999999
Q ss_pred HHHHHHHHHhcccCCCChHHHHHHHHHHHH
Q 015472 236 ARSIYKRCYSKRFTGTGSEDICHAWLRFER 265 (406)
Q Consensus 236 ar~l~~ral~~~~~~~~~~~i~~~~i~fE~ 265 (406)
|..||+.|+...- .....|-.++-.|+.
T Consensus 169 A~~Vy~~Gi~~~A--~P~~rL~~~~~~F~~ 196 (223)
T 4aez_C 169 ADEVYQKGKRMKA--KPFLRFQQKYQQFTH 196 (223)
T ss_dssp HHHHHHHHHHHTC--BSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC--ccHHHHHHHHHHHHH
Confidence 9999999998632 224677778877873
No 206
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.39 E-value=0.0022 Score=49.13 Aligned_cols=64 Identities=9% Similarity=0.013 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 182 ~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
...|...+......| +++.|...|++++...|+++.+|...+......|+++.|...|++++..
T Consensus 4 ~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQG-LYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 346777788888888 9999999999999999999999999999999999999999999999974
No 207
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.019 Score=55.48 Aligned_cols=163 Identities=9% Similarity=-0.021 Sum_probs=109.2
Q ss_pred chhhhHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHccCCHHHHHHHHHHHHhCccccHHHH-HHH
Q 015472 72 KVGNVVRDVYSRATKNCPWVG-----------------ELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEY-LDL 133 (406)
Q Consensus 72 ~~~e~a~~vyerA~~~~P~~~-----------------~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~~~~~~-~~l 133 (406)
++++.|...|..++...|... ......+..+ ...++++++..+|.+++......-... ...
T Consensus 18 ~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 96 (434)
T 4b4t_Q 18 KQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLY-VTMGAKDKLREFIPHSTEYMMQFAKSKTVKV 96 (434)
T ss_dssp TCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHTHHHHHTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 367889999999999877532 1244444423 457899999999999987432210110 011
Q ss_pred HHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Q 015472 134 FLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS 213 (406)
Q Consensus 134 ~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~ 213 (406)
....++.+ .. ..++++.+...++.++..... .........++...+.+....| ++..|..+++.++...
T Consensus 97 ~~~~l~~~----~~-----~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~l~~~~~~~ 165 (434)
T 4b4t_Q 97 LKTLIEKF----EQ-----VPDSLDDQIFVCEKSIEFAKR-EKRVFLKHSLSIKLATLHYQKK-QYKDSLALINDLLREF 165 (434)
T ss_dssp HHHHHHHH----CS-----CCSCHHHHHHHHHHHHHHHHH-SSCCSSHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----Hh-----CCCCHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHcc-ChHHHHHHHHHHHHHH
Confidence 11111111 00 013345666777777765432 2222334678889999999999 9999999999999873
Q ss_pred ------cchHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 214 ------GAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 214 ------~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
+...+++..-+.+....|++++|+.+|.+++..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 166 KKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp TTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 234678999999999999999999999999875
No 208
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.24 E-value=0.033 Score=52.26 Aligned_cols=190 Identities=10% Similarity=0.005 Sum_probs=120.5
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcchhhhHHHHHHH
Q 015472 6 AHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFP--VSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (406)
Q Consensus 6 ~~yE~~L~~~~~~~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P--~~~~lW~~Y~~~l~~~~~~~e~a~~vyer 83 (406)
..|+..+...+. + .....-.+......|+++.|..++.++|...| .+.++....+..+...+ ..+.|++.+++
T Consensus 87 ~~l~~l~~~~~~-~---~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~-r~d~A~k~l~~ 161 (310)
T 3mv2_B 87 EELENLLKDKQN-S---PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNN-NVSTASTIFDN 161 (310)
T ss_dssp HHHHHTTTTSCC-C---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-C---cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCC-CHHHHHHHHHH
Confidence 445555554321 1 22233445555667999999999999999987 88999999998877654 68999999999
Q ss_pred HHHhCC---CC-HHHHHHHHHH---HHHccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHhccccchhhhh
Q 015472 84 ATKNCP---WV-GELWVRSLLS---LERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLD 156 (406)
Q Consensus 84 A~~~~P---~~-~~lW~~y~~~---lE~~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~ 156 (406)
+....| |. ..+...++.. +-..++....+..+|+.+....|. |.....++. + ++ + .++
T Consensus 162 ~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~-~~~~~lLln--~-~~--~---------~g~ 226 (310)
T 3mv2_B 162 YTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT-WKTQLGLLN--L-HL--Q---------QRN 226 (310)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS-HHHHHHHHH--H-HH--H---------HTC
T ss_pred HHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC-cccHHHHHH--H-HH--H---------cCC
Confidence 998888 22 2333333321 222345799999999998876553 211111111 1 11 1 145
Q ss_pred HHHHHHHHHHHHHHHhhhhcC----CchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHH
Q 015472 157 YSLIRETFQRASDYLSEQMKN----TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEA 219 (406)
Q Consensus 157 ~~~~r~~f~~a~~~l~~~~~~----~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~l 219 (406)
+..+...++.+.... +.+.+ .+.+.....+.+.+...+| + .|..++.++...+|+++-+
T Consensus 227 ~~eAe~~L~~l~~~~-p~~~~k~~~~p~~~~~LaN~i~l~~~lg-k--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 227 IAEAQGIVELLLSDY-YSVEQKENAVLYKPTFLANQITLALMQG-L--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHHHHHHHHHSHH-HHTTTCHHHHSSHHHHHHHHHHHHHHTT-C--TTHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHhc-ccccccccCCCCCHHHHHHHHHHHHHhC-h--HHHHHHHHHHHhCCCChHH
Confidence 556666666444321 11101 1334556667777777788 5 7889999999999987643
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.23 E-value=0.01 Score=57.06 Aligned_cols=92 Identities=9% Similarity=-0.077 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHH
Q 015472 180 GLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHA 259 (406)
Q Consensus 180 ~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~ 259 (406)
....++..++......| +++.|...+++|+..+|+ ...|..........|+.+.|...|.+|+.. .+..+...|..
T Consensus 275 ~~a~~~~alal~~l~~g-d~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~~~ 350 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKG-KTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYWIE 350 (372)
T ss_dssp TCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHHHh
Confidence 33456666666666668 999999999999999975 445566666677889999999999999974 22223333443
Q ss_pred HHHHHHHhCCHHHHHHHHH
Q 015472 260 WLRFEREYGTLEDFDHSVQ 278 (406)
Q Consensus 260 ~i~fE~~~G~~e~~~~a~~ 278 (406)
=+-| |-+++.|..++.
T Consensus 351 ~l~F---~sn~~~i~~~~~ 366 (372)
T 3ly7_A 351 NGIF---QTSVPYVVPYLD 366 (372)
T ss_dssp HSSS---CCCHHHHCHHHH
T ss_pred Ccee---ecchhhhHHHHH
Confidence 3334 556666555444
No 210
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.15 E-value=0.0093 Score=48.14 Aligned_cols=123 Identities=10% Similarity=-0.020 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc------hHHHHHHHHHHHH
Q 015472 155 LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA------MLEAWQSYISMEI 228 (406)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~------~~~lW~~y~~~E~ 228 (406)
+++..+...|.+++...... ........++...+.+....| +++.|...|++++...+. ...++...+....
T Consensus 23 ~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 100 (164)
T 3ro3_A 23 GNFRDAVIAHEQRLLIAKEF-GDKAAERIAYSNLGNAYIFLG-EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT 100 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHh-CCchHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 45567778888887765332 111222356777888888899 999999999999987543 2457788888888
Q ss_pred HcccHHHHHHHHHHHHhcccCCCChHHHHHHHH---HHHHHhCCHHHHHHHHHh
Q 015472 229 ELDHINEARSIYKRCYSKRFTGTGSEDICHAWL---RFEREYGTLEDFDHSVQK 279 (406)
Q Consensus 229 ~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i---~fE~~~G~~e~~~~a~~k 279 (406)
..|+++.|..+|++++...-....+......+. ......|+.+.......+
T Consensus 101 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 101 LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999999999874211122222333332 334455766554333333
No 211
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=97.15 E-value=0.0068 Score=51.30 Aligned_cols=98 Identities=13% Similarity=0.226 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHh--hhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-ccc-hHHHHHHHHHHHHHcccHHHH
Q 015472 161 RETFQRASDYLS--EQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-SGA-MLEAWQSYISMEIELDHINEA 236 (406)
Q Consensus 161 r~~f~~a~~~l~--~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~-~~~-~~~lW~~y~~~E~~~g~~~~a 236 (406)
..++++|+..+. ....+.+..+.+|+.|+++ .+ + ++.+|..+... .|. .+.+|..|+.+....|++..|
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~---~~-~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A 115 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRL---CN-E---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKA 115 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHH---CS-C---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHh---cC-C---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence 345666766542 2334556678999999976 24 4 67789888877 444 578999999999999999999
Q ss_pred HHHHHHHHhcccCCCChHHHHHHHHHHHHHh
Q 015472 237 RSIYKRCYSKRFTGTGSEDICHAWLRFEREY 267 (406)
Q Consensus 237 r~l~~ral~~~~~~~~~~~i~~~~i~fE~~~ 267 (406)
..||..|+... . .....|-.++-.|+.+.
T Consensus 116 ~~Iy~~Gi~~~-A-~P~~~L~~~~~~F~~R~ 144 (164)
T 2wvi_A 116 DAIFQEGIQQK-A-EPLERLQSQHRQFQARV 144 (164)
T ss_dssp HHHHHHHHHTT-C-BSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-C-CcHHHHHHHHHHHHHHH
Confidence 99999999863 2 23578888888887764
No 212
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.09 E-value=0.026 Score=51.84 Aligned_cols=179 Identities=7% Similarity=-0.115 Sum_probs=121.8
Q ss_pred ChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHH-----HHHHHHHHHHhcchhhhHHHHHHHHHHhCCCC--
Q 015472 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDL-----WLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV-- 91 (406)
Q Consensus 19 ~~~~~~~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~l-----W~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~-- 91 (406)
+......+..-+......|+++.+..+|++++...+.+++. |...+..+....+..+.|...|++|+...+..
T Consensus 71 ~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~ 150 (293)
T 3u3w_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSC
T ss_pred cchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccccc
Confidence 35567777777888888999999999999999988877763 44433333323346789999999999854332
Q ss_pred ----HHHHHHHHHHHHHccCCHHHHHHHHHHHHhCcc---cc----HHHHHHHHHHHHHHHHHHHhccccchhhhhHHHH
Q 015472 92 ----GELWVRSLLSLERSRASEEEISTVFEKSLLCAF---ST----FEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLI 160 (406)
Q Consensus 92 ----~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~---~~----~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~ 160 (406)
..++...+..+ ...+++++|...|++|+.... .. ...+..+...+. ..+++..+
T Consensus 151 ~~~~~~~~~~lg~~y-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~--------------~~~~y~~A 215 (293)
T 3u3w_A 151 VYQNLYIENAIANIY-AENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY--------------LDSRYEES 215 (293)
T ss_dssp TTHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH--------------HTTCHHHH
T ss_pred HHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH--------------HHhHHHHH
Confidence 23566666544 458899999999999996211 11 112222221111 12566778
Q ss_pred HHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Q 015472 161 RETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS 213 (406)
Q Consensus 161 r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~ 213 (406)
...|++|++..... ........++...+.....+|.+.+.|...|++|+...
T Consensus 216 ~~~~~~al~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 216 LYQVNKAIEISCRI-NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHT-TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 88888888865322 22223356788888888889844699999999999873
No 213
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.08 E-value=0.053 Score=54.49 Aligned_cols=166 Identities=10% Similarity=-0.042 Sum_probs=97.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhc--------chhhhHHHHHHHHHHh-CCCCHHH
Q 015472 25 QYMIYLKYEQSSGDPGRVQLLYERAITD-FPVSSDLWLDYTQYLDKTL--------KVGNVVRDVYSRATKN-CPWVGEL 94 (406)
Q Consensus 25 ~w~~Yi~~E~~~g~~~~~~~lyEral~~-~P~~~~lW~~Y~~~l~~~~--------~~~e~a~~vyerA~~~-~P~~~~l 94 (406)
.+..-|+..-+.|+++.|..+|+++... .+.+...|...+..+...+ ...+.|..+|+..... ++.+...
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4566677777888999999999988876 3446667766665543221 1235677788877653 3335567
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCcc-ccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhh
Q 015472 95 WVRSLLSLERSRASEEEISTVFEKSLLCAF-STFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSE 173 (406)
Q Consensus 95 W~~y~~~lE~~~~~~e~ar~if~~al~~~~-~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~ 173 (406)
|...+..+- ..++.++|..+|+.....+. +....|-.+...++ + .++++.+..+|++..+.
T Consensus 108 yn~lI~~~~-~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~-----~---------~g~~~~A~~l~~~M~~~--- 169 (501)
T 4g26_A 108 FTNGARLAV-AKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFC-----R---------KGDADKAYEVDAHMVES--- 169 (501)
T ss_dssp HHHHHHHHH-HHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-----H---------TTCHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHH-----H---------CCCHHHHHHHHHHHHhc---
Confidence 777776553 46788888888888776543 22222222221111 0 13344555566554432
Q ss_pred hhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 015472 174 QMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (406)
Q Consensus 174 ~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~ 212 (406)
. ..++...|...+......| ++++|..+|++.-..
T Consensus 170 G---~~Pd~~ty~~Li~~~~~~g-~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 170 E---VVPEEPELAALLKVSMDTK-NADKVYKTLQRLRDL 204 (501)
T ss_dssp T---CCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred C---CCCCHHHHHHHHHHHhhCC-CHHHHHHHHHHHHHh
Confidence 0 1223345556666666677 777777777776554
No 214
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.07 E-value=0.002 Score=63.57 Aligned_cols=196 Identities=9% Similarity=0.028 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015472 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER 104 (406)
Q Consensus 25 ~w~~Yi~~E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~ 104 (406)
+....+..-.+.|+..++..+|. .| +...|..-+..+...+ ..+.|+..|.++ .-|...+..+ .
T Consensus 96 i~~~Li~~Y~Klg~l~e~e~f~~-----~p-n~~a~~~IGd~~~~~g-~yeeA~~~Y~~a--------~n~~~LA~~L-~ 159 (449)
T 1b89_A 96 VETELIFALAKTNRLAELEEFIN-----GP-NNAHIQQVGDRCYDEK-MYDAAKLLYNNV--------SNFGRLASTL-V 159 (449)
T ss_dssp -------------CHHHHTTTTT-----CC------------------CTTTHHHHHHHT--------TCHHHHHHHH-H
T ss_pred hHHHHHHHHHHhCCHHHHHHHHc-----CC-cHHHHHHHHHHHHHcC-CHHHHHHHHHHh--------hhHHHHHHHH-H
Confidence 34444444555677777666663 23 3457777777665543 567777777766 3666666644 3
Q ss_pred ccCCHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHh--ccc---cchhh---hhHHHHHHHHHHHHHHHhhhhc
Q 015472 105 SRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRIL--FSG---EVEGV---LDYSLIRETFQRASDYLSEQMK 176 (406)
Q Consensus 105 ~~~~~e~ar~if~~al~~~~~~~~~~~~l~~~~~~~l~Rr~~--~~~---~~e~~---~~~~~~r~~f~~a~~~l~~~~~ 176 (406)
+.+++++|.+.|.+|. .+..|.........-.++ +.+. +.. ..+.. ..+=.-++.|++++.++...++
T Consensus 160 ~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef--~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 160 HLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEF--RLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp TTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCH--HHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcH--HHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 5777888888888772 121222221111100000 1110 000 00000 0111122356667777777766
Q ss_pred CCchHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhcc-----chHHHHHHHHHHHHHcccHHHHHHHH
Q 015472 177 NTDGLLRLYAYWAHLEQSMG-KDMVSARGVWERLLKISG-----AMLEAWQSYISMEIELDHINEARSIY 240 (406)
Q Consensus 177 ~~~~~~~l~~~~a~~e~~~~-~d~~~Ar~ife~al~~~~-----~~~~lW~~y~~~E~~~g~~~~ar~l~ 240 (406)
..+.+..+|-.++-++.+.. +.+....+.|...+...+ .++.+|..+.-+....+++++|....
T Consensus 236 le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 236 LERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 55666778888877776654 134455566665665566 67789999999999999999887643
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.06 E-value=0.0084 Score=45.03 Aligned_cols=57 Identities=16% Similarity=0.087 Sum_probs=51.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhccchHH-HHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 189 AHLEQSMGKDMVSARGVWERLLKISGAMLE-AWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 189 a~~e~~~~~d~~~Ar~ife~al~~~~~~~~-lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
+......| +++.|...|++++...|+++. +|...+......|+++.|...|++++..
T Consensus 7 a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQG-DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHT-CHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcC-CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44445678 899999999999999999999 9999999999999999999999999984
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.00 E-value=0.0058 Score=46.62 Aligned_cols=72 Identities=11% Similarity=-0.120 Sum_probs=52.4
Q ss_pred CCCCHHHHHHHHHHHHHhcc--hhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCccc
Q 015472 53 FPVSSDLWLDYTQYLDKTLK--VGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (406)
Q Consensus 53 ~P~~~~lW~~Y~~~l~~~~~--~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~~ 125 (406)
+|.++++|..|+..+.-.++ ..+.+..++++|+...|.+...+..++. .....+++++|...|++++...|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~-~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIAN-DHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57788888888876643322 2467888888888888888877777765 334578888888888888876553
No 217
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=96.99 E-value=0.0007 Score=66.84 Aligned_cols=205 Identities=12% Similarity=0.122 Sum_probs=53.7
Q ss_pred hcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHH
Q 015472 35 SSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEIST 114 (406)
Q Consensus 35 ~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~ 114 (406)
..|+++++...++++ ..+++|...+......+ ..+.|...|.++ + ....|..-+..++ ..+.++++..
T Consensus 15 ~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g-~~~eAIdsfika----~-D~~~y~~V~~~ae-~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKG-MVKEAIDSYIKA----D-DPSSYMEVVQAAN-TSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcC-CHHHHHHHHHcC----C-CHHHHHHHHHHHH-hCCCHHHHHH
Confidence 457888899999888 34469998887666544 567788888774 2 2335555555454 3678888888
Q ss_pred HHHHHHhCccc-cHH-HHHHHHHHHHHHHHH--HHhccccchh---hhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHH
Q 015472 115 VFEKSLLCAFS-TFE-EYLDLFLTRIDGLRR--RILFSGEVEG---VLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAY 187 (406)
Q Consensus 115 if~~al~~~~~-~~~-~~~~l~~~~~~~l~R--r~~~~~~~e~---~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~ 187 (406)
.|+.+++..++ .+. .++..+. +++.+.+ ..+.+..... .++.---.+.|+.|..++.. ...|..
T Consensus 83 yl~~ark~~~~~~i~~~Li~~Y~-Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~--------a~n~~~ 153 (449)
T 1b89_A 83 YLQMARKKARESYVETELIFALA-KTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNN--------VSNFGR 153 (449)
T ss_dssp ---------------------------CHHHHTTTTTCC----------------CTTTHHHHHHH--------TTCHHH
T ss_pred HHHHHHHhCccchhHHHHHHHHH-HhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHH--------hhhHHH
Confidence 88888774322 111 1111110 1111110 0000000000 01100012233334333321 124666
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHh
Q 015472 188 WAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREY 267 (406)
Q Consensus 188 ~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~ 267 (406)
.+..+..+| +++.|...|.++ .++..|...+.-....|+++.|..+... +. ..+..+. .-+.+=+..
T Consensus 154 LA~~L~~Lg-~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~-----~~ad~l~-~lv~~Yek~ 220 (449)
T 1b89_A 154 LASTLVHLG-EYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IV-----VHADELE-ELINYYQDR 220 (449)
T ss_dssp HHHHHHTTT-CHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TT-----TCHHHHH-HHHHHHHHT
T ss_pred HHHHHHHhc-cHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HH-----hCHhhHH-HHHHHHHHC
Confidence 777777777 788888888777 3577788877777778888888444332 11 1233333 344444556
Q ss_pred CCHHHH
Q 015472 268 GTLEDF 273 (406)
Q Consensus 268 G~~e~~ 273 (406)
|..++.
T Consensus 221 G~~eEa 226 (449)
T 1b89_A 221 GYFEEL 226 (449)
T ss_dssp TCHHHH
T ss_pred CCHHHH
Confidence 665554
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.88 E-value=0.0082 Score=45.74 Aligned_cols=68 Identities=12% Similarity=-0.119 Sum_probs=59.6
Q ss_pred chHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 179 DGLLRLYAYWAHLEQSMGK--DMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 179 ~~~~~l~~~~a~~e~~~~~--d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
|.+..+|..|+......++ ....|+.+|++++..+|+++..++..+......|++..|..+|++++..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4456788899998876652 2689999999999999999999999999999999999999999999984
No 219
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.73 E-value=0.028 Score=56.36 Aligned_cols=91 Identities=11% Similarity=0.001 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcC-CchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----cchH---HHHHHHHH
Q 015472 155 LDYSLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS-----GAML---EAWQSYIS 225 (406)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~-----~~~~---~lW~~y~~ 225 (406)
++++.+...|++++......++. ++.........+.+...+| ++++|..+|+++|... ++++ ......+.
T Consensus 323 g~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g-~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 401 (490)
T 3n71_A 323 GLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQ-AYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGL 401 (490)
T ss_dssp TCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 44566777788887766555543 4555677888899999999 9999999999999762 3444 56677777
Q ss_pred HHHHcccHHHHHHHHHHHHhc
Q 015472 226 MEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 226 ~E~~~g~~~~ar~l~~ral~~ 246 (406)
....+|+++.|..+|++|+..
T Consensus 402 ~~~~~G~~~eA~~~~~~Al~i 422 (490)
T 3n71_A 402 TNWHAGHIEVGHGMICKAYAI 422 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 788899999999999999875
No 220
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.73 E-value=0.034 Score=55.76 Aligned_cols=127 Identities=12% Similarity=-0.000 Sum_probs=89.7
Q ss_pred ccCCHHHHHHHHHHHHhC-----ccccHH---HHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhc
Q 015472 105 SRASEEEISTVFEKSLLC-----AFSTFE---EYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMK 176 (406)
Q Consensus 105 ~~~~~e~ar~if~~al~~-----~~~~~~---~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~ 176 (406)
.+|.+++|..+|+++|.. ++.... .+-++...+. ..++++.+...|++++......++
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~--------------~~g~~~eA~~~~~~aL~i~~~~lG 386 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLS--------------YLQAYEEASHYARRMVDGYMKLYH 386 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH--------------HTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH--------------HhcCHHHHHHHHHHHHHHHHHHcC
Confidence 478999999999999973 333322 2222222111 125677888999999887766655
Q ss_pred C-CchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----cchH---HHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 177 N-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS-----GAML---EAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 177 ~-~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~-----~~~~---~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
. +|.....+.+.|.++..+| +++.|..+|++|+.+. ++++ ++-.........+|.++.|-.+|.++...
T Consensus 387 ~~Hp~~a~~l~nLa~~~~~~G-~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 387 HNNAQLGMAVMRAGLTNWHAG-HIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 5555667778999999999 9999999999999862 3333 44455555566778889999999988764
No 221
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.56 E-value=0.24 Score=49.68 Aligned_cols=171 Identities=11% Similarity=-0.006 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCcc-ccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHh
Q 015472 94 LWVRSLLSLERSRASEEEISTVFEKSLLCAF-STFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLS 172 (406)
Q Consensus 94 lW~~y~~~lE~~~~~~e~ar~if~~al~~~~-~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~ 172 (406)
++...+..+ -..|++++|..+|+++...+. +....|-.+... +. +...........++..+..+|++....
T Consensus 28 ~l~~~id~c-~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~----c~-~~~~~~~~~~~~~l~~A~~lf~~M~~~-- 99 (501)
T 4g26_A 28 LLKQKLDMC-SKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYV----CS-LAEAATESSPNPGLSRGFDIFKQMIVD-- 99 (501)
T ss_dssp HHHHHHHHT-TTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHH----HT-TCCCCSSSSCCHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHH-HhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH----HH-hCCchhhhhhcchHHHHHHHHHHHHHh--
Confidence 444444433 347889999999999887543 222222222111 10 110000001113344566666665432
Q ss_pred hhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCC
Q 015472 173 EQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-SGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGT 251 (406)
Q Consensus 173 ~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~-~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~ 251 (406)
. ..++...|...+......| +++.|..+|+..... ..-+...|...+....+.|+++.|..+|+......+..
T Consensus 100 -G---~~Pd~~tyn~lI~~~~~~g-~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P- 173 (501)
T 4g26_A 100 -K---VVPNEATFTNGARLAVAKD-DPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP- 173 (501)
T ss_dssp -T---CCCCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC-
T ss_pred -C---CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-
Confidence 1 2233456777777778889 899999999998876 22246678888888889999999999999988764432
Q ss_pred ChHHHHHHHHHHHHHhCCHHHHHHHHHh
Q 015472 252 GSEDICHAWLRFEREYGTLEDFDHSVQK 279 (406)
Q Consensus 252 ~~~~i~~~~i~fE~~~G~~e~~~~a~~k 279 (406)
....|...|.-..+.|+.+.....+++
T Consensus 174 -d~~ty~~Li~~~~~~g~~d~A~~ll~~ 200 (501)
T 4g26_A 174 -EEPELAALLKVSMDTKNADKVYKTLQR 200 (501)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 367888999988889998877665444
No 222
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.53 E-value=0.017 Score=57.06 Aligned_cols=91 Identities=13% Similarity=0.082 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcC-CchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----cchH---HHHHHHHH
Q 015472 155 LDYSLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS-----GAML---EAWQSYIS 225 (406)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~-----~~~~---~lW~~y~~ 225 (406)
++++.+...|++++......++. ++.....+...+.+...+| ++++|..+|++++... ++++ ..+...+.
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g-~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQ-DWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45566777888888766555543 4455677778888899999 9999999999999762 3444 56677777
Q ss_pred HHHHcccHHHHHHHHHHHHhc
Q 015472 226 MEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 226 ~E~~~g~~~~ar~l~~ral~~ 246 (406)
....+|+++.|..+|++|+..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHH
Confidence 788999999999999999874
No 223
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.49 E-value=0.2 Score=48.09 Aligned_cols=150 Identities=11% Similarity=-0.008 Sum_probs=84.0
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHh--c--chhhhHHHHHHHHHHhCCCCHHHHHHHHHHH--HHccC--C---HHHHHH
Q 015472 46 YERAITDFPVSSDLWLDYTQYLDKT--L--KVGNVVRDVYSRATKNCPWVGELWVRSLLSL--ERSRA--S---EEEIST 114 (406)
Q Consensus 46 yEral~~~P~~~~lW~~Y~~~l~~~--~--~~~e~a~~vyerA~~~~P~~~~lW~~y~~~l--E~~~~--~---~e~ar~ 114 (406)
-+++...-|.+++.|-.|+.-.... . .....++.+|++|+...|.....|...+... ....+ + ...++.
T Consensus 183 ~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~ 262 (372)
T 3ly7_A 183 QETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNT 262 (372)
T ss_dssp HHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHH
Confidence 4456666788888888877543221 1 1346788889999988888776555433211 11111 1 122233
Q ss_pred HHHHHHhC--ccccHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHH
Q 015472 115 VFEKSLLC--AFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLE 192 (406)
Q Consensus 115 if~~al~~--~~~~~~~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e 192 (406)
.+..+... .+.....+..+..... ..++++.+...+++|+.. .+. ...|...+.+.
T Consensus 263 a~~a~~a~~~~~~~a~~~~alal~~l--------------~~gd~d~A~~~l~rAl~L-------n~s-~~a~~llG~~~ 320 (372)
T 3ly7_A 263 EIDNIVTLPELNNLSIIYQIKAVSAL--------------VKGKTDESYQAINTGIDL-------EMS-WLNYVLLGKVY 320 (372)
T ss_dssp HHHHHHTCGGGTTCHHHHHHHHHHHH--------------HHTCHHHHHHHHHHHHHH-------CCC-HHHHHHHHHHH
T ss_pred HHHHHHhcccCCcCHHHHHHHHHHHH--------------hCCCHHHHHHHHHHHHhc-------CCC-HHHHHHHHHHH
Confidence 33322221 2222222222111000 014455667777777664 222 33556667777
Q ss_pred HHcCCCHHHHHHHHHHHHHhccchHH
Q 015472 193 QSMGKDMVSARGVWERLLKISGAMLE 218 (406)
Q Consensus 193 ~~~~~d~~~Ar~ife~al~~~~~~~~ 218 (406)
...| +++.|...|++|+..+|....
T Consensus 321 ~~~G-~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 321 EMKG-MNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHTT-CHHHHHHHHHHHHHHSCSHHH
T ss_pred HHCC-CHHHHHHHHHHHHhcCCCcCh
Confidence 7788 999999999999999997653
No 224
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.34 E-value=0.075 Score=52.29 Aligned_cols=90 Identities=10% Similarity=0.005 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhcC-CchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----cchH---HHHHHHHHH
Q 015472 156 DYSLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS-----GAML---EAWQSYISM 226 (406)
Q Consensus 156 ~~~~~r~~f~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~-----~~~~---~lW~~y~~~ 226 (406)
+++.+...|++++......++. ++.........+.+...+| ++++|..++++++... ++++ ..+...+..
T Consensus 302 ~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g-~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~ 380 (429)
T 3qwp_A 302 KWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLG-LLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKL 380 (429)
T ss_dssp CHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHH
Confidence 3445556666666543333332 4445667778888888899 9999999999999762 3444 466677777
Q ss_pred HHHcccHHHHHHHHHHHHhc
Q 015472 227 EIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 227 E~~~g~~~~ar~l~~ral~~ 246 (406)
...+|+++.|..+|++|+..
T Consensus 381 ~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 381 QLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHH
Confidence 88899999999999999874
No 225
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=94.52 E-value=0.63 Score=37.42 Aligned_cols=60 Identities=5% Similarity=0.044 Sum_probs=44.0
Q ss_pred HHHHHHHHHHH----cCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHH----cccHHHHHHHHHHHHhc
Q 015472 184 LYAYWAHLEQS----MGKDMVSARGVWERLLKISGAMLEAWQSYISMEIE----LDHINEARSIYKRCYSK 246 (406)
Q Consensus 184 l~~~~a~~e~~----~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~----~g~~~~ar~l~~ral~~ 246 (406)
.+..++.+... .+ |+.+|...|++++.. .++..+.....+... .++++.|..+|++|...
T Consensus 59 a~~~Lg~~y~~G~g~~~-d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 59 GCRFLGDFYENGKYVKK-DLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHHCSSSCC-CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCc-cHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 44556666555 45 899999999999876 345566666666666 67899999999999874
No 226
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=94.52 E-value=0.54 Score=46.17 Aligned_cols=93 Identities=11% Similarity=0.006 Sum_probs=67.0
Q ss_pred cCCHHHHHHHHHHHHhC-----ccccHH---HHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcC
Q 015472 106 RASEEEISTVFEKSLLC-----AFSTFE---EYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKN 177 (406)
Q Consensus 106 ~~~~e~ar~if~~al~~-----~~~~~~---~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~ 177 (406)
.+++++|..+|+++|.. ++.... .+-++...+. ..++++.+...|++++......++.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~--------------~~g~~~eA~~~~~~aL~i~~~~lG~ 376 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCL--------------YMQDWEGALKYGQKIIKPYSKHYPV 376 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH--------------HTTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHH--------------hhcCHHHHHHHHHHHHHHHHHHcCC
Confidence 46789999999999973 333322 2222222221 1256778899999999877666654
Q ss_pred -CchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Q 015472 178 -TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS 213 (406)
Q Consensus 178 -~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~ 213 (406)
+|.....+.+.|.+...+| ++++|..+|++|+.+.
T Consensus 377 ~Hp~~a~~l~nLa~~~~~qg-~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 377 YSLNVASMWLKLGRLYMGLE-NKAAGEKALKKAIAIM 412 (433)
T ss_dssp SCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHH
Confidence 5555667778999999999 9999999999999873
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.97 E-value=0.9 Score=34.52 Aligned_cols=59 Identities=8% Similarity=-0.019 Sum_probs=50.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhc-------cchHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 187 YWAHLEQSMGKDMVSARGVWERLLKIS-------GAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 187 ~~a~~e~~~~~d~~~Ar~ife~al~~~-------~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
..+......+ ++..|..-|+.|+... .....++..++....+.|+++.|..++++++..
T Consensus 10 ~lG~~~~~~~-~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 10 ELGKVAYTEA-DYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcc-chHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 4566667788 9999999999999874 245789999999999999999999999999973
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.96 E-value=0.48 Score=36.14 Aligned_cols=72 Identities=19% Similarity=0.122 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 015472 155 LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISME 227 (406)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E 227 (406)
.++..+..-|+.|++...+..........++..++.....+| +++.|...+++++...|++..+.....-++
T Consensus 19 ~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g-~~~~A~~~~~~al~l~P~~~~~~~n~~~~~ 90 (104)
T 2v5f_A 19 ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG-DLDKALLLTKKLLELDPEHQRANGNLKYFE 90 (104)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHhhHHHHH
Confidence 456667777788877653221112345678889999999999 999999999999999999887765554333
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.45 E-value=0.48 Score=39.36 Aligned_cols=86 Identities=7% Similarity=-0.137 Sum_probs=67.4
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc--hhhhHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHccCCHHHHHH
Q 015472 39 PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLK--VGNVVRDVYSRATKNC-P-WVGELWVRSLLSLERSRASEEEIST 114 (406)
Q Consensus 39 ~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~--~~e~a~~vyerA~~~~-P-~~~~lW~~y~~~lE~~~~~~e~ar~ 114 (406)
+..++..|++.+...|.+.+....|+-.+.++.. +.+++..+++..++.. | ...+.+..++... ...+++++|+.
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~-~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN-YRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-HHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHH-HHccCHHHHHH
Confidence 3567889999999889999999999987765431 4468899999999987 6 3345555555433 45899999999
Q ss_pred HHHHHHhCccc
Q 015472 115 VFEKSLLCAFS 125 (406)
Q Consensus 115 if~~al~~~~~ 125 (406)
.++++|+..|.
T Consensus 93 y~~~lL~ieP~ 103 (152)
T 1pc2_A 93 YVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHhcCCC
Confidence 99999998875
No 230
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.03 E-value=0.95 Score=37.58 Aligned_cols=83 Identities=11% Similarity=-0.047 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhc-c-chHHHHHHHHHHHHHccc
Q 015472 157 YSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMG--KDMVSARGVWERLLKIS-G-AMLEAWQSYISMEIELDH 232 (406)
Q Consensus 157 ~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~--~d~~~Ar~ife~al~~~-~-~~~~lW~~y~~~E~~~g~ 232 (406)
+..++..|.+.... .+........|+-.+.... .++.++..+++.++... | +..+.+...+-...+.|+
T Consensus 14 l~~~~~~y~~e~~~-------~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~ 86 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-------GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE 86 (152)
T ss_dssp HHHHHHHHHHHHHT-------TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHcc-------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccC
Confidence 34566667665442 1223445556766666644 14569999999999997 7 456666666666789999
Q ss_pred HHHHHHHHHHHHhc
Q 015472 233 INEARSIYKRCYSK 246 (406)
Q Consensus 233 ~~~ar~l~~ral~~ 246 (406)
+++|+.+++++|..
T Consensus 87 Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 87 YEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999984
No 231
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=92.74 E-value=2.2 Score=41.64 Aligned_cols=92 Identities=8% Similarity=-0.190 Sum_probs=65.6
Q ss_pred cCCHHHHHHHHHHHHhC-----ccccHH---HHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhhhhcC
Q 015472 106 RASEEEISTVFEKSLLC-----AFSTFE---EYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKN 177 (406)
Q Consensus 106 ~~~~e~ar~if~~al~~-----~~~~~~---~~~~l~~~~~~~l~Rr~~~~~~~e~~~~~~~~r~~f~~a~~~l~~~~~~ 177 (406)
.+.+++|..+|+++|.. ++.... .+-++...+. ..++++.+...+++++......++.
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~--------------~~g~~~eA~~~~~~~L~i~~~~lg~ 365 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACI--------------NLGLLEEALFYGTRTMEPYRIFFPG 365 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHH--------------HHTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHH--------------hhccHHHHHHHHHHHHHhHHHHcCC
Confidence 57899999999999974 233222 2222222111 1256778888999998877665543
Q ss_pred -CchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 015472 178 -TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (406)
Q Consensus 178 -~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~ 212 (406)
+|.....+.+.|.+...+| +++.|..+|++|+.+
T Consensus 366 ~Hp~~a~~l~nLa~~~~~~g-~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 366 SHPVRGVQVMKVGKLQLHQG-MFPQAMKNLRLAFDI 400 (429)
T ss_dssp SCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence 5555667778899999999 899999999999987
No 232
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=92.05 E-value=2.1 Score=34.20 Aligned_cols=107 Identities=7% Similarity=-0.034 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHH----c
Q 015472 155 LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIE----L 230 (406)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~----~ 230 (406)
.|+..+...|+++.+.- .+..+ ++.+..... .+++|...|++++.. .++..+.....+... .
T Consensus 9 ~d~~~A~~~~~~aa~~g------~~~a~-----lg~~y~~g~-~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~ 74 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN------EMFGC-----LSLVSNSQI-NKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVK 74 (138)
T ss_dssp HHHHHHHHHHHHHHHTT------CTTHH-----HHHHTCTTS-CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSC
T ss_pred cCHHHHHHHHHHHHcCC------CHhhh-----HHHHHHcCC-CHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCC
Confidence 34445566666665431 12222 555544444 788999999999987 446666667776666 6
Q ss_pred ccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHh
Q 015472 231 DHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (406)
Q Consensus 231 g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~a~~k 279 (406)
++++.|..+|++|... . .+...+.-=..++.-.|...+++.|+.-
T Consensus 75 ~d~~~A~~~~~~Aa~~---g-~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 119 (138)
T 1klx_A 75 KDLRKAAQYYSKACGL---N-DQDGCLILGYKQYAGKGVVKNEKQAVKT 119 (138)
T ss_dssp CCHHHHHHHHHHHHHT---T-CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred ccHHHHHHHHHHHHcC---C-CHHHHHHHHHHHHCCCCCCcCHHHHHHH
Confidence 8999999999999974 2 2333333333344445555555555443
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=83.75 E-value=11 Score=39.46 Aligned_cols=59 Identities=17% Similarity=0.177 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 015472 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRC 243 (406)
Q Consensus 184 l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ra 243 (406)
+...=++|+...+ +++-|..+-.+|+...|+....|...+...+..|+++.|.-.+..|
T Consensus 339 LL~~Qa~FLl~K~-~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRG-DYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccC-cHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4555677888877 9999999999999999999999999999999999999998766655
No 234
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=81.43 E-value=14 Score=35.16 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=27.9
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHH
Q 015472 33 EQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRAT 85 (406)
Q Consensus 33 E~~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~ 85 (406)
....|++..+....++++..+|.+..+|..++..+...+ ....|..+|++..
T Consensus 181 ~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~G-r~~~Al~~y~~~r 232 (388)
T 2ff4_A 181 EIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSD-RQSDALGAYRRVK 232 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTT-CHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Confidence 344455555555555556556666666655555554433 3344555555543
No 235
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=78.76 E-value=1.5 Score=34.05 Aligned_cols=22 Identities=9% Similarity=0.268 Sum_probs=17.0
Q ss_pred CCCCCCCccceeeecccccccC
Q 015472 384 RTKGFTDECTAFLSNINLKASH 405 (406)
Q Consensus 384 ~~~~~~~~~~~f~~n~~~~~~~ 405 (406)
......+.+||||+|||+++++
T Consensus 33 ~~~~~~~~~~l~V~nlp~~~t~ 54 (118)
T 2khc_A 33 KQIEGPEGCNLFIYHLPQEFTD 54 (118)
T ss_dssp SSCCCCCSEEEEEECSCTTCCH
T ss_pred CCCCCCCCCEEEEeCCCCCCCH
Confidence 3344557789999999998875
No 236
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.58 E-value=1.8 Score=33.40 Aligned_cols=19 Identities=11% Similarity=0.149 Sum_probs=15.2
Q ss_pred CCCCccceeeecccccccC
Q 015472 387 GFTDECTAFLSNINLKASH 405 (406)
Q Consensus 387 ~~~~~~~~f~~n~~~~~~~ 405 (406)
.....+||||+|||+++++
T Consensus 21 ~~~~~~~l~V~nLp~~~t~ 39 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTE 39 (115)
T ss_dssp CCSCCSEEEEECCCTTCCH
T ss_pred CCCCCCEEEEeCCCCCCCH
Confidence 3445789999999998875
No 237
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=76.69 E-value=0.9 Score=34.46 Aligned_cols=18 Identities=0% Similarity=0.135 Sum_probs=15.0
Q ss_pred CCCccceeeecccccccC
Q 015472 388 FTDECTAFLSNINLKASH 405 (406)
Q Consensus 388 ~~~~~~~f~~n~~~~~~~ 405 (406)
+.+.++|||+|||++++|
T Consensus 16 ~~~gt~lfV~nLp~~~te 33 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQ 33 (99)
T ss_dssp CCCCSEEEEESCCTTCCH
T ss_pred cCCCCEEEEeCCCCCCCH
Confidence 455679999999999885
No 238
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.96 E-value=0.91 Score=35.13 Aligned_cols=20 Identities=15% Similarity=0.107 Sum_probs=16.0
Q ss_pred CCCCCccceeeecccccccC
Q 015472 386 KGFTDECTAFLSNINLKASH 405 (406)
Q Consensus 386 ~~~~~~~~~f~~n~~~~~~~ 405 (406)
....+.+||||+||++++++
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~ 39 (114)
T 2cq4_A 20 PEERDARTVFCMQLAARIRP 39 (114)
T ss_dssp TTHHHHTEEEEESCCTTCCH
T ss_pred cccCCCCEEEEeCCCCCCCH
Confidence 34456789999999998875
No 239
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.98 E-value=1.4 Score=33.86 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=16.8
Q ss_pred CCCCCCCccceeeecccccccC
Q 015472 384 RTKGFTDECTAFLSNINLKASH 405 (406)
Q Consensus 384 ~~~~~~~~~~~f~~n~~~~~~~ 405 (406)
......+.+||||+||++++++
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te 43 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRD 43 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCH
T ss_pred CccCCCCCCEEEEECCCCcCCH
Confidence 3344556789999999998875
No 240
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=73.96 E-value=0.46 Score=35.96 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=14.1
Q ss_pred CCccceeeecccccccC
Q 015472 389 TDECTAFLSNINLKASH 405 (406)
Q Consensus 389 ~~~~~~f~~n~~~~~~~ 405 (406)
.+.+||||+||++++++
T Consensus 25 ~~~~~l~V~nlp~~~~~ 41 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATE 41 (101)
T ss_dssp SSCCEEEEESCCTTCCH
T ss_pred CCCCEEEEcCCCcccCH
Confidence 35689999999998875
No 241
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=73.92 E-value=1.8 Score=33.29 Aligned_cols=22 Identities=9% Similarity=0.286 Sum_probs=16.8
Q ss_pred CCCCCCCccceeeecccccccC
Q 015472 384 RTKGFTDECTAFLSNINLKASH 405 (406)
Q Consensus 384 ~~~~~~~~~~~f~~n~~~~~~~ 405 (406)
......+.+||||+|||+++++
T Consensus 19 ~~~~~~~~~~l~V~nLp~~~te 40 (108)
T 2jrs_A 19 LQKGSAGPMRLYVGSLHFNITE 40 (108)
T ss_dssp SCCSCSSCEEEEEECCCSSCCH
T ss_pred cccCCCCCCEEEEeCCCCCCCH
Confidence 3444556789999999998874
No 242
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=73.45 E-value=1.5 Score=35.10 Aligned_cols=17 Identities=6% Similarity=0.155 Sum_probs=14.6
Q ss_pred CCccceeeecccccccC
Q 015472 389 TDECTAFLSNINLKASH 405 (406)
Q Consensus 389 ~~~~~~f~~n~~~~~~~ 405 (406)
.+.+||||.|||++++|
T Consensus 40 ~~~~~lfVgnLp~~~te 56 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTK 56 (126)
T ss_dssp SSCCEEEEECCCTTCCH
T ss_pred CCCCEEEEeCCCCCCCH
Confidence 45679999999999985
No 243
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=73.13 E-value=1.2 Score=36.20 Aligned_cols=17 Identities=12% Similarity=0.061 Sum_probs=14.7
Q ss_pred CCccceeeecccccccC
Q 015472 389 TDECTAFLSNINLKASH 405 (406)
Q Consensus 389 ~~~~~~f~~n~~~~~~~ 405 (406)
.+.+||||.|||++++|
T Consensus 42 ~~~~~lfVgnLp~~~te 58 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSV 58 (136)
T ss_dssp CTTCEEEEESCCTTCCH
T ss_pred CCCCEEEEeCCCCCCCH
Confidence 45689999999999885
No 244
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=72.56 E-value=1.9 Score=32.96 Aligned_cols=18 Identities=11% Similarity=0.383 Sum_probs=14.7
Q ss_pred CCCccceeeecccccccC
Q 015472 388 FTDECTAFLSNINLKASH 405 (406)
Q Consensus 388 ~~~~~~~f~~n~~~~~~~ 405 (406)
..+.+||||+|||+++++
T Consensus 19 ~~~~~~l~V~nLp~~~t~ 36 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRT 36 (109)
T ss_dssp CCCSSEEEEESCCTTCCH
T ss_pred CCCCCEEEEeCCCCCCCH
Confidence 345689999999998875
No 245
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=72.20 E-value=3.6 Score=32.10 Aligned_cols=18 Identities=22% Similarity=0.001 Sum_probs=14.8
Q ss_pred CCCccceeeeccccc-ccC
Q 015472 388 FTDECTAFLSNINLK-ASH 405 (406)
Q Consensus 388 ~~~~~~~f~~n~~~~-~~~ 405 (406)
....++|||.|||++ ++|
T Consensus 22 ~~p~~~l~V~NLp~~~~te 40 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSD 40 (112)
T ss_dssp SCCCCEEEEESCCCSSCCS
T ss_pred CCCCCEEEEeCCCCccCCH
Confidence 445789999999998 775
No 246
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=72.04 E-value=1.9 Score=33.27 Aligned_cols=18 Identities=6% Similarity=0.108 Sum_probs=14.7
Q ss_pred CCCccceeeecccccccC
Q 015472 388 FTDECTAFLSNINLKASH 405 (406)
Q Consensus 388 ~~~~~~~f~~n~~~~~~~ 405 (406)
..+.+||||.|||+++++
T Consensus 22 ~~~~~~l~V~nLp~~~t~ 39 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGD 39 (115)
T ss_dssp CSTTCCEEEESCCSSCCH
T ss_pred CCCCcEEEEeCCCCCCCH
Confidence 345689999999998875
No 247
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=71.98 E-value=1.2 Score=34.41 Aligned_cols=21 Identities=10% Similarity=0.381 Sum_probs=12.7
Q ss_pred CCCCCCccceeeecccccccC
Q 015472 385 TKGFTDECTAFLSNINLKASH 405 (406)
Q Consensus 385 ~~~~~~~~~~f~~n~~~~~~~ 405 (406)
.+...+.+||||+|||++++|
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te 39 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQ 39 (109)
T ss_dssp -------CCEEEESCCTTCCH
T ss_pred cccCCCCCEEEEeCCCCCCCH
Confidence 344456789999999999875
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=71.76 E-value=14 Score=35.21 Aligned_cols=58 Identities=19% Similarity=0.122 Sum_probs=51.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 015472 187 YWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (406)
Q Consensus 187 ~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~ 245 (406)
..+..+...| ++..|......++..+|-+..+|..++......|+...|...|+++-.
T Consensus 176 ~~~~~~l~~g-~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 176 AKAEAEIACG-RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555666788 899999999999999999999999999999999999999999998765
No 249
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.52 E-value=2 Score=33.99 Aligned_cols=19 Identities=0% Similarity=0.043 Sum_probs=15.1
Q ss_pred CCCCccceeeecccccccC
Q 015472 387 GFTDECTAFLSNINLKASH 405 (406)
Q Consensus 387 ~~~~~~~~f~~n~~~~~~~ 405 (406)
......+|||.|||++++|
T Consensus 27 ~~~ps~~LfVgNLp~~vte 45 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTE 45 (119)
T ss_dssp CSSCCSEEEEESCCTTCCH
T ss_pred cCCCCCEEEEeCCCCCCCH
Confidence 3345679999999999875
No 250
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=70.98 E-value=1.6 Score=33.03 Aligned_cols=18 Identities=11% Similarity=0.261 Sum_probs=14.7
Q ss_pred CCCccceeeecccccccC
Q 015472 388 FTDECTAFLSNINLKASH 405 (406)
Q Consensus 388 ~~~~~~~f~~n~~~~~~~ 405 (406)
..+.+||||+|||+++++
T Consensus 20 ~~~~~~l~V~nlp~~~t~ 37 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATE 37 (106)
T ss_dssp BTTBEEEEEECCCTTCCH
T ss_pred CCCCCEEEEeCCCCCCCH
Confidence 345689999999998875
No 251
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=69.70 E-value=1.8 Score=35.49 Aligned_cols=20 Identities=20% Similarity=0.527 Sum_probs=15.8
Q ss_pred CCCCCccceeeecccccccC
Q 015472 386 KGFTDECTAFLSNINLKASH 405 (406)
Q Consensus 386 ~~~~~~~~~f~~n~~~~~~~ 405 (406)
....+.+||||+|||++++|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~ 53 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTE 53 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCH
T ss_pred ccCCCCCEEEEeCCCCCCCH
Confidence 33456789999999998875
No 252
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=69.66 E-value=2.9 Score=32.15 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=14.8
Q ss_pred CCCccceeeecccccccC
Q 015472 388 FTDECTAFLSNINLKASH 405 (406)
Q Consensus 388 ~~~~~~~f~~n~~~~~~~ 405 (406)
..+.+||||+|||+++++
T Consensus 22 ~~~~~~l~V~nlp~~~t~ 39 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDE 39 (114)
T ss_dssp CCCTTEEEEESCCTTCCH
T ss_pred CCCCCEEEEeCCCCCCCH
Confidence 345689999999998875
No 253
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.25 E-value=3.6 Score=30.56 Aligned_cols=17 Identities=12% Similarity=0.163 Sum_probs=13.9
Q ss_pred CCccceeeecccccccC
Q 015472 389 TDECTAFLSNINLKASH 405 (406)
Q Consensus 389 ~~~~~~f~~n~~~~~~~ 405 (406)
...+||||+|||+++++
T Consensus 17 ~~~~~l~V~nL~~~~t~ 33 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARV 33 (97)
T ss_dssp CCCCEEEEECCCTTCCH
T ss_pred CCCCEEEEeCCCCcCcH
Confidence 34579999999998875
No 254
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=68.86 E-value=1.9 Score=32.90 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=14.3
Q ss_pred CCccceeeecccccccC
Q 015472 389 TDECTAFLSNINLKASH 405 (406)
Q Consensus 389 ~~~~~~f~~n~~~~~~~ 405 (406)
.+.+||||+|||+++++
T Consensus 24 ~~~~~l~V~nlp~~~t~ 40 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQE 40 (110)
T ss_dssp TTBEEEEEESCCTTCCH
T ss_pred CCCCEEEEeCCCCCCCH
Confidence 45689999999998875
No 255
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=68.46 E-value=2 Score=32.64 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=14.9
Q ss_pred CCCccceeeecccccccC
Q 015472 388 FTDECTAFLSNINLKASH 405 (406)
Q Consensus 388 ~~~~~~~f~~n~~~~~~~ 405 (406)
....+||||+|||+++++
T Consensus 26 ~~~~~~l~V~nlp~~~t~ 43 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSD 43 (107)
T ss_dssp CCCSEEEEEESCCTTCCH
T ss_pred CCCCCEEEEeCCCCCCCH
Confidence 355789999999998875
No 256
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=68.23 E-value=1.8 Score=33.33 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=15.0
Q ss_pred CCCCCccceeeecccccccC
Q 015472 386 KGFTDECTAFLSNINLKASH 405 (406)
Q Consensus 386 ~~~~~~~~~f~~n~~~~~~~ 405 (406)
....+.+||||+||++++++
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~ 45 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQE 45 (108)
T ss_dssp --CCSCSEEEECSSCTTCCH
T ss_pred CCCCCCCEEEEECCCCCCCH
Confidence 34456689999999998875
No 257
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=67.11 E-value=1.9 Score=32.44 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=12.9
Q ss_pred CCCccceeeecccccccC
Q 015472 388 FTDECTAFLSNINLKASH 405 (406)
Q Consensus 388 ~~~~~~~f~~n~~~~~~~ 405 (406)
....+||||+||++++++
T Consensus 16 ~~~~~~l~V~nLp~~~t~ 33 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTE 33 (100)
T ss_dssp ----CEEEESCCSSCCSS
T ss_pred CCCCcEEEEeCCCCCCCH
Confidence 445689999999999876
No 258
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=65.08 E-value=3.9 Score=22.23 Aligned_cols=19 Identities=32% Similarity=0.442 Sum_probs=11.6
Q ss_pred ccccCCCCccccCCcccccc
Q 015472 316 EKRKSDSNISYEQSPAKRQK 335 (406)
Q Consensus 316 ~krk~~~~~~~~~~~~k~~k 335 (406)
.|||+ +|-.+..||.||.+
T Consensus 8 rkrkr-ewdddddppkkrrr 26 (28)
T 3ukx_C 8 RKRKR-EWDDDDDPPKKRRR 26 (28)
T ss_dssp CCCCC-CCCCSSSCCSCCCC
T ss_pred HHhhc-ccccCCCchhhhhc
Confidence 45555 34456678887765
No 259
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=65.04 E-value=78 Score=34.50 Aligned_cols=100 Identities=9% Similarity=-0.048 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCCHHHHHHH
Q 015472 24 QQYMIYLKYEQSSGDPGRVQLLYERAIT----DFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKN-CPWVGELWVRS 98 (406)
Q Consensus 24 ~~w~~Yi~~E~~~g~~~~~~~lyEral~----~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~-~P~~~~lW~~y 98 (406)
..+..+|+-.-+.|.+++|..+|...-. .+.-+...|...+.-+.+.+ ..++|..+|+..... +..+.-.+...
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G-~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQG-AFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3688889989999999999999976542 35568888888887666655 578899999999863 33355667777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCcc
Q 015472 99 LLSLERSRASEEEISTVFEKSLLCAF 124 (406)
Q Consensus 99 ~~~lE~~~~~~e~ar~if~~al~~~~ 124 (406)
+..+-+.+...++|..+|+.....+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~ 232 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGL 232 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCC
Confidence 76665544457889999999988553
No 260
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=64.85 E-value=2.5 Score=34.06 Aligned_cols=18 Identities=11% Similarity=0.333 Sum_probs=14.7
Q ss_pred CCCccceeeecccccccC
Q 015472 388 FTDECTAFLSNINLKASH 405 (406)
Q Consensus 388 ~~~~~~~f~~n~~~~~~~ 405 (406)
....+||||+|||+++++
T Consensus 42 ~~~~~~l~V~nLp~~~te 59 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQE 59 (143)
T ss_dssp CSCCSEEEEEEECTTCCH
T ss_pred CCCCCEEEEeCCCCCCCH
Confidence 345689999999999875
No 261
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=64.80 E-value=1.8 Score=35.16 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=14.0
Q ss_pred CCccceeeecccccccC
Q 015472 389 TDECTAFLSNINLKASH 405 (406)
Q Consensus 389 ~~~~~~f~~n~~~~~~~ 405 (406)
...+||||.|||++++|
T Consensus 44 ~~~~~lfV~nLp~~~te 60 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATE 60 (139)
T ss_dssp -CCCCEECCSCCTTCCH
T ss_pred CCCCEEEEeCCCCCCCH
Confidence 44579999999999985
No 262
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.23 E-value=1.4 Score=34.14 Aligned_cols=19 Identities=5% Similarity=0.169 Sum_probs=15.3
Q ss_pred CCCCccceeeecccccccC
Q 015472 387 GFTDECTAFLSNINLKASH 405 (406)
Q Consensus 387 ~~~~~~~~f~~n~~~~~~~ 405 (406)
...+.+||||+|||+++++
T Consensus 23 ~~~~~~~l~V~nLp~~~te 41 (116)
T 1x4b_A 23 EKEQFRKLFIGGLSFETTE 41 (116)
T ss_dssp HHHHHTEEEEECCTTCCCH
T ss_pred ccCCCCEEEEeCCCCCCCH
Confidence 3456689999999998875
No 263
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=63.26 E-value=54 Score=25.91 Aligned_cols=61 Identities=13% Similarity=0.078 Sum_probs=39.9
Q ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHHHhc-cchHHHHHHHHH-HHHHcccHHHHHHHHHHHHhc
Q 015472 186 AYWAHLEQSMG--KDMVSARGVWERLLKIS-GAMLEAWQSYIS-MEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 186 ~~~a~~e~~~~--~d~~~Ar~ife~al~~~-~~~~~lW~~y~~-~E~~~g~~~~ar~l~~ral~~ 246 (406)
..||--+.... .++.++..+++..+... |..-.-++.|+. .-.+.|++++|+.+++.+|..
T Consensus 39 F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 39 FEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34444444433 13456888888888876 533333444443 366889999999999999974
No 264
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=62.56 E-value=2.8 Score=31.36 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=14.6
Q ss_pred CCCCCCccceeeecccc-cccC
Q 015472 385 TKGFTDECTAFLSNINL-KASH 405 (406)
Q Consensus 385 ~~~~~~~~~~f~~n~~~-~~~~ 405 (406)
.....+.+||||+||++ ++++
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~ 37 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSK 37 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCH
T ss_pred cCCCCCCCEEEEeCCCcccCCH
Confidence 34445678999999998 7764
No 265
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=62.34 E-value=3.8 Score=31.25 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=13.7
Q ss_pred CCccceeeeccccc-ccC
Q 015472 389 TDECTAFLSNINLK-ASH 405 (406)
Q Consensus 389 ~~~~~~f~~n~~~~-~~~ 405 (406)
...+||||.|||++ +++
T Consensus 25 ~~~~~l~V~nl~~~~~t~ 42 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKK 42 (110)
T ss_dssp TCSSEEEECSCCCSSCCH
T ss_pred CCCcEEEEeCCCcccCCH
Confidence 34579999999998 764
No 266
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=62.29 E-value=3.7 Score=32.74 Aligned_cols=18 Identities=6% Similarity=-0.119 Sum_probs=14.8
Q ss_pred CCCccceeeecccccccC
Q 015472 388 FTDECTAFLSNINLKASH 405 (406)
Q Consensus 388 ~~~~~~~f~~n~~~~~~~ 405 (406)
..+.+||||+||+++++|
T Consensus 39 ~~~~~~l~V~nLp~~~~~ 56 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDE 56 (139)
T ss_dssp TTTTSEEEEESCSTTCCH
T ss_pred CCCCCEEEEeCCCCCCCH
Confidence 345679999999999875
No 267
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=61.49 E-value=6.2 Score=31.26 Aligned_cols=20 Identities=5% Similarity=0.117 Sum_probs=15.9
Q ss_pred CCCCCccceeeecccccccC
Q 015472 386 KGFTDECTAFLSNINLKASH 405 (406)
Q Consensus 386 ~~~~~~~~~f~~n~~~~~~~ 405 (406)
....+..||||+|||+++++
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~ 77 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDD 77 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCH
T ss_pred CCCCCCcEEEEEeCCCCCCH
Confidence 34456789999999998874
No 268
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.32 E-value=3 Score=31.84 Aligned_cols=16 Identities=19% Similarity=0.441 Sum_probs=13.5
Q ss_pred CccceeeecccccccC
Q 015472 390 DECTAFLSNINLKASH 405 (406)
Q Consensus 390 ~~~~~f~~n~~~~~~~ 405 (406)
..+||||+|||+++++
T Consensus 24 ~~~~l~V~nl~~~~t~ 39 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTD 39 (109)
T ss_dssp SCCEEEEECCSSCCCH
T ss_pred CCcEEEEeCCCCCCCH
Confidence 4579999999998874
No 269
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=60.91 E-value=3.1 Score=33.41 Aligned_cols=18 Identities=11% Similarity=0.158 Sum_probs=14.5
Q ss_pred CCCccceeeecccccccC
Q 015472 388 FTDECTAFLSNINLKASH 405 (406)
Q Consensus 388 ~~~~~~~f~~n~~~~~~~ 405 (406)
..+.+||||+|||+++++
T Consensus 44 ~~~~~~l~V~nLp~~~te 61 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSP 61 (135)
T ss_dssp GGGCCCEEEECCCSSCHH
T ss_pred CCCCCEEEEeCCCCCCCH
Confidence 345679999999998864
No 270
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=60.24 E-value=3.9 Score=32.51 Aligned_cols=18 Identities=11% Similarity=0.159 Sum_probs=14.9
Q ss_pred CCCccceeeecccccccC
Q 015472 388 FTDECTAFLSNINLKASH 405 (406)
Q Consensus 388 ~~~~~~~f~~n~~~~~~~ 405 (406)
....+||||+|||+++++
T Consensus 43 ~~~~~~l~V~nLp~~~te 60 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTE 60 (129)
T ss_dssp CCCSSCBCEETCTTSCCH
T ss_pred CCCCCEEEEeCCCCCCCH
Confidence 445689999999998875
No 271
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.62 E-value=25 Score=34.02 Aligned_cols=63 Identities=11% Similarity=0.105 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKIS---GAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 183 ~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~---~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
..+..+|++....| |++.|.++|.++...+ +...++|+.-+.+....+++..+...+.++...
T Consensus 132 ~~~~~la~~~~~~G-d~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 132 QAWINLGEYYAQIG-DKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp SCCHHHHHHHHHHC-CCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 35667888888999 9999999999988774 345789999999999999999999999998764
No 272
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=59.55 E-value=47 Score=26.25 Aligned_cols=86 Identities=9% Similarity=-0.100 Sum_probs=59.1
Q ss_pred ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc--hhhhHHHHHHHHHHhC-CCCH--HHHHHHHHHHHHccCCHHHH
Q 015472 38 DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLK--VGNVVRDVYSRATKNC-PWVG--ELWVRSLLSLERSRASEEEI 112 (406)
Q Consensus 38 ~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~--~~e~a~~vyerA~~~~-P~~~--~lW~~y~~~lE~~~~~~e~a 112 (406)
.+..++.-|++++...+.+.+.=..|+--+.++.. +..+...+++..++.. |... -++..-+-+ ...+++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~--yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN--YRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH--HHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH--HHhhhHHHH
Confidence 34567888999988888899999999876654331 2234677788777765 4211 233222222 247999999
Q ss_pred HHHHHHHHhCccc
Q 015472 113 STVFEKSLLCAFS 125 (406)
Q Consensus 113 r~if~~al~~~~~ 125 (406)
+..++.+|...|.
T Consensus 94 ~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 94 LKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCCC
Confidence 9999999998775
No 273
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=59.46 E-value=6 Score=32.03 Aligned_cols=21 Identities=10% Similarity=0.390 Sum_probs=16.4
Q ss_pred CCCCCCccceeeecccccccC
Q 015472 385 TKGFTDECTAFLSNINLKASH 405 (406)
Q Consensus 385 ~~~~~~~~~~f~~n~~~~~~~ 405 (406)
.......+||||+|||+++++
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSC
T ss_pred ccCCCCCCEEEEeCCCCCCCH
Confidence 334456789999999999875
No 274
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=59.39 E-value=4.3 Score=31.69 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=15.5
Q ss_pred CCCCccceeeecccccccC
Q 015472 387 GFTDECTAFLSNINLKASH 405 (406)
Q Consensus 387 ~~~~~~~~f~~n~~~~~~~ 405 (406)
.....+||||+||++++++
T Consensus 31 ~~~~~~~l~V~nlp~~~t~ 49 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSD 49 (124)
T ss_dssp CCSSCEEEEEESCCSSCCH
T ss_pred CCCCCCEEEEeCCCCCCCH
Confidence 4456789999999998874
No 275
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=59.33 E-value=3.2 Score=32.19 Aligned_cols=15 Identities=13% Similarity=0.076 Sum_probs=13.2
Q ss_pred ccceeeecccccccC
Q 015472 391 ECTAFLSNINLKASH 405 (406)
Q Consensus 391 ~~~~f~~n~~~~~~~ 405 (406)
.++|||+|||+++++
T Consensus 28 ~~~l~VgnLp~~~te 42 (111)
T 2jvr_A 28 RYRITMKNLPEGCSW 42 (111)
T ss_dssp CEEEEEECSSCCCCH
T ss_pred CCEEEEECCCCCCCH
Confidence 579999999999874
No 276
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=58.06 E-value=3 Score=34.46 Aligned_cols=16 Identities=0% Similarity=0.204 Sum_probs=12.9
Q ss_pred CccceeeecccccccC
Q 015472 390 DECTAFLSNINLKASH 405 (406)
Q Consensus 390 ~~~~~f~~n~~~~~~~ 405 (406)
+.+||||+||+++++|
T Consensus 54 ~~~~lfVgnLp~~~te 69 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTD 69 (156)
T ss_dssp --CEEEEECCCTTCCH
T ss_pred CCCEEEEeCCCCCCCH
Confidence 5689999999999875
No 277
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=57.95 E-value=4 Score=31.14 Aligned_cols=15 Identities=0% Similarity=-0.119 Sum_probs=12.9
Q ss_pred ccceeeecccccccC
Q 015472 391 ECTAFLSNINLKASH 405 (406)
Q Consensus 391 ~~~~f~~n~~~~~~~ 405 (406)
+.||||+|||++++|
T Consensus 21 s~~l~V~NLp~~~te 35 (100)
T 3r27_A 21 SPVVHIRGLIDGVVE 35 (100)
T ss_dssp CSEEEEESCCTTCCH
T ss_pred CcEEEEeCCCCCCCH
Confidence 459999999999875
No 278
>1pjn_A Histone-binding protein N1/N2; importin alpha/karyopherin alpha, nuclear localization sequence (NLS) recognition, bipartite NLS; 2.50A {Synthetic}
Probab=57.17 E-value=5.8 Score=21.98 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=12.3
Q ss_pred ccccCCCCccccCCcccccccC
Q 015472 316 EKRKSDSNISYEQSPAKRQKHA 337 (406)
Q Consensus 316 ~krk~~~~~~~~~~~~k~~k~~ 337 (406)
.|||.++++.... .+|+.|.+
T Consensus 2 KKrkp~Ees~~~d-~aKk~k~~ 22 (26)
T 1pjn_A 2 KKRKTEEESPLKD-KAKKSKGX 22 (26)
T ss_dssp CCCCCSSCCSCCC-CSCCCCC-
T ss_pred CCcCCccccchHH-HHhhhccc
Confidence 5777776665444 66655544
No 279
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=54.88 E-value=4.7 Score=33.40 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=13.6
Q ss_pred CCccceeeecccccccC
Q 015472 389 TDECTAFLSNINLKASH 405 (406)
Q Consensus 389 ~~~~~~f~~n~~~~~~~ 405 (406)
.+.+||||+|||+++++
T Consensus 70 ~~~~~l~V~nLp~~~t~ 86 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQE 86 (165)
T ss_dssp C-CEEEEEESCCTTCCH
T ss_pred CCCCEEEEeCCCCCCCH
Confidence 34679999999998875
No 280
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=54.31 E-value=2.5 Score=33.08 Aligned_cols=17 Identities=12% Similarity=0.429 Sum_probs=14.2
Q ss_pred CCccceeeecccccccC
Q 015472 389 TDECTAFLSNINLKASH 405 (406)
Q Consensus 389 ~~~~~~f~~n~~~~~~~ 405 (406)
.+.+||||+||++++++
T Consensus 34 ~~~~~l~V~nlp~~~t~ 50 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTA 50 (124)
T ss_dssp HHHTEEEEEEECTTCCH
T ss_pred CCCCEEEEeCCCCCCCH
Confidence 35679999999998875
No 281
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=54.27 E-value=5.4 Score=33.66 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=15.5
Q ss_pred CCCCccceeeecccccccC
Q 015472 387 GFTDECTAFLSNINLKASH 405 (406)
Q Consensus 387 ~~~~~~~~f~~n~~~~~~~ 405 (406)
.....+||||+||++++++
T Consensus 84 ~~~~~~~l~V~nLp~~~te 102 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSD 102 (177)
T ss_dssp SCTTCEEEEEECCCSCCCH
T ss_pred CCCCCCEEEEeCCCCCCCH
Confidence 4456789999999998875
No 282
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=53.99 E-value=6.1 Score=32.21 Aligned_cols=18 Identities=11% Similarity=0.158 Sum_probs=14.8
Q ss_pred CCCccceeeecccccccC
Q 015472 388 FTDECTAFLSNINLKASH 405 (406)
Q Consensus 388 ~~~~~~~f~~n~~~~~~~ 405 (406)
....+||||+|||+++++
T Consensus 67 ~~~~~~l~v~nl~~~~~~ 84 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSP 84 (158)
T ss_dssp CCBCCEEEEESCCTTCCH
T ss_pred CCCCCEEEEeCCCCCCCH
Confidence 355689999999998875
No 283
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=53.68 E-value=6.1 Score=21.50 Aligned_cols=14 Identities=29% Similarity=0.359 Sum_probs=11.1
Q ss_pred CCccccCCcccccc
Q 015472 322 SNISYEQSPAKRQK 335 (406)
Q Consensus 322 ~~~~~~~~~~k~~k 335 (406)
.|-.+++||.||++
T Consensus 13 ewdedeepprkrkr 26 (28)
T 3ukw_C 13 EWDEDEEPPRKRKR 26 (28)
T ss_dssp CCCGGGSCCSSCCC
T ss_pred ccccccCcchhhhc
Confidence 56678899999875
No 284
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=53.40 E-value=5.7 Score=31.58 Aligned_cols=15 Identities=20% Similarity=0.353 Sum_probs=12.9
Q ss_pred ccceeeecccccccC
Q 015472 391 ECTAFLSNINLKASH 405 (406)
Q Consensus 391 ~~~~f~~n~~~~~~~ 405 (406)
.+||||.|||+++++
T Consensus 29 ~~~LfV~nL~~~~~e 43 (127)
T 2a3j_A 29 SQVVLITNINPEVPK 43 (127)
T ss_dssp CSEEEEESCCTTSCH
T ss_pred CCEEEEeCCCCCCCH
Confidence 579999999998764
No 285
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=53.28 E-value=43 Score=27.93 Aligned_cols=59 Identities=14% Similarity=-0.015 Sum_probs=44.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhc---cc------hHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 187 YWAHLEQSMGKDMVSARGVWERLLKIS---GA------MLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 187 ~~a~~e~~~~~d~~~Ar~ife~al~~~---~~------~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
..++.....+ -++.|.-+...++... ++ .+.+-..|++.....|++.+|...|++||..
T Consensus 25 dqik~L~d~~-LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 25 DHVRDMAAAG-LHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh-hHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 3444556677 7889998888877763 22 1346778888888999999999999999864
No 286
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=48.09 E-value=5.4 Score=35.22 Aligned_cols=16 Identities=6% Similarity=0.271 Sum_probs=12.9
Q ss_pred CccceeeecccccccC
Q 015472 390 DECTAFLSNINLKASH 405 (406)
Q Consensus 390 ~~~~~f~~n~~~~~~~ 405 (406)
+.+||||.||+++++|
T Consensus 67 ~~~~lfVgnL~~~~te 82 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTD 82 (229)
T ss_dssp --CEEEEESCCTTCCH
T ss_pred CccEEEEeCCCCCCCH
Confidence 6789999999999875
No 287
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.35 E-value=1.1e+02 Score=29.64 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-ccc-----hHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Q 015472 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-SGA-----MLEAWQSYISMEIELDHINEARSIYKRCYSKRF 248 (406)
Q Consensus 181 ~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~-~~~-----~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~ 248 (406)
..++...++.+....| ++..|..+......- .+. -.++++.=+.+....+++.+|+.++.++..+.+
T Consensus 136 rarl~~~La~i~e~~g-~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~ 208 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEG-KIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTF 208 (445)
T ss_dssp HHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhc
Confidence 3457778888888888 899999998887654 221 246888888888888999999999999865433
No 288
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=45.80 E-value=52 Score=27.67 Aligned_cols=22 Identities=9% Similarity=0.122 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHH
Q 015472 184 LYAYWAHLEQSMGKDMVSARGVW 206 (406)
Q Consensus 184 l~~~~a~~e~~~~~d~~~Ar~if 206 (406)
.|...++.-...| ++.-|..+|
T Consensus 36 ~Wk~Lg~~AL~~g-n~~lAe~cy 57 (177)
T 3mkq_B 36 TWERLIQEALAQG-NASLAEMIY 57 (177)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHcC-ChHHHHHHH
Confidence 4555555555555 555444433
No 289
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=44.66 E-value=1.2e+02 Score=24.22 Aligned_cols=60 Identities=10% Similarity=0.030 Sum_probs=41.5
Q ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHHhccchHHHHHHHHH-HHHHcccHHHHHHHHHHHHhc
Q 015472 187 YWAHLEQSMG--KDMVSARGVWERLLKISGAMLEAWQSYIS-MEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 187 ~~a~~e~~~~--~d~~~Ar~ife~al~~~~~~~~lW~~y~~-~E~~~g~~~~ar~l~~ral~~ 246 (406)
.||--+.... .++.++..+++..++..|..-.=++.|+. --.+.|++++||.+.+.+|..
T Consensus 45 ~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 45 NYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4444344433 25668889999999988854433333333 356889999999999999974
No 290
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=44.57 E-value=2.6e+02 Score=30.53 Aligned_cols=82 Identities=9% Similarity=-0.117 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----ccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHH
Q 015472 184 LYAYWAHLEQSMGKDMVSARGVWERLLKI----SGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHA 259 (406)
Q Consensus 184 l~~~~a~~e~~~~~d~~~Ar~ife~al~~----~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~ 259 (406)
.+..++....+.| .+++|..+|...-.. +.-+.-.|...++-..+.|.+++|..+|+.....-+..+ ..-+..
T Consensus 129 TynaLIdglcK~G-~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD--vvTYnt 205 (1134)
T 3spa_A 129 RLLAFFKCCLLTD-QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD--LLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHT-CHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC--HHHHHH
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc--HHHHHH
Confidence 4555666778888 899999999775432 223466788888888899999999999999887644432 345666
Q ss_pred HHH-HHHHhCC
Q 015472 260 WLR-FEREYGT 269 (406)
Q Consensus 260 ~i~-fE~~~G~ 269 (406)
.|. |++ .|.
T Consensus 206 LI~glcK-~G~ 215 (1134)
T 3spa_A 206 ALQCMGR-QDQ 215 (1134)
T ss_dssp HHHHHHH-HTC
T ss_pred HHHHHHh-CCC
Confidence 665 454 354
No 291
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=40.16 E-value=1e+02 Score=30.41 Aligned_cols=62 Identities=5% Similarity=0.003 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 015472 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 184 l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~lW~~y~~~E~~~g~~~~ar~l~~ral~~ 246 (406)
..+..+++-.... .+..|+..|.+|+...|++...+...+-+....|+.-.|.-.|-|++..
T Consensus 154 ~l~~LGDL~RY~~-~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 154 CLVHLGDIARYRN-QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHcccHHHHHH-HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence 4455666655556 7899999999999999999999988888888888887777777777754
No 292
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=40.02 E-value=14 Score=29.63 Aligned_cols=18 Identities=17% Similarity=0.407 Sum_probs=14.7
Q ss_pred CCCccceeeecccccccC
Q 015472 388 FTDECTAFLSNINLKASH 405 (406)
Q Consensus 388 ~~~~~~~f~~n~~~~~~~ 405 (406)
..+.+++||+|||+++++
T Consensus 84 ~~~~~~l~v~nl~~~~t~ 101 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDD 101 (166)
T ss_dssp CTTCEEEEEESCCTTCCH
T ss_pred CCCCceEEECCCCCCCCH
Confidence 346779999999998874
No 293
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=38.99 E-value=98 Score=24.71 Aligned_cols=33 Identities=12% Similarity=0.083 Sum_probs=25.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHH
Q 015472 185 YAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE 218 (406)
Q Consensus 185 ~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~~~ 218 (406)
+-..|--..++| ++++||..-+.+|...|++..
T Consensus 81 LYyLAvg~yklg-dY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 81 LYYLTIGCYKLG-EYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp HHHHHHHHHHHT-CHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHhh-hHHHHHHHHHHHHhhCCCCHH
Confidence 334444567889 999999999999999998643
No 294
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=38.28 E-value=1.5e+02 Score=23.97 Aligned_cols=61 Identities=10% Similarity=0.049 Sum_probs=44.3
Q ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHHHhccchHHHHHHHHHH-HHHcccHHHHHHHHHHHHhc
Q 015472 186 AYWAHLEQSMG--KDMVSARGVWERLLKISGAMLEAWQSYISM-EIELDHINEARSIYKRCYSK 246 (406)
Q Consensus 186 ~~~a~~e~~~~--~d~~~Ar~ife~al~~~~~~~~lW~~y~~~-E~~~g~~~~ar~l~~ral~~ 246 (406)
..||--+.... .++.++..+++..+...|..-.-++.|+.+ ..+.|++++||.+.+.+|..
T Consensus 43 F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 43 FNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 34544444433 256788899999999888655555556555 55789999999999999984
No 295
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=38.05 E-value=1.7e+02 Score=24.20 Aligned_cols=60 Identities=15% Similarity=0.075 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---cch----------------------HHHHHHHHHHHHHcccHHHH
Q 015472 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKIS---GAM----------------------LEAWQSYISMEIELDHINEA 236 (406)
Q Consensus 182 ~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~---~~~----------------------~~lW~~y~~~E~~~g~~~~a 236 (406)
..+...||+.....+ ++.+|...|.++|... +.+ .++=..-+...+..|++..|
T Consensus 63 ~~~l~~ladalf~~~-eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A 141 (167)
T 3ffl_A 63 YQLLVYHADSLFHDK-EYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA 141 (167)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence 567778999988889 9999999999998762 211 13334445566677888888
Q ss_pred HHHHHH
Q 015472 237 RSIYKR 242 (406)
Q Consensus 237 r~l~~r 242 (406)
..+++.
T Consensus 142 i~~Le~ 147 (167)
T 3ffl_A 142 IAILDG 147 (167)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 877665
No 296
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=37.69 E-value=7.5 Score=33.22 Aligned_cols=15 Identities=7% Similarity=0.224 Sum_probs=12.9
Q ss_pred ccceeeecccccccC
Q 015472 391 ECTAFLSNINLKASH 405 (406)
Q Consensus 391 ~~~~f~~n~~~~~~~ 405 (406)
.+||||+|||+++++
T Consensus 109 ~~~l~V~nLp~~~t~ 123 (193)
T 2voo_A 109 NRSVYIKGFPTDATL 123 (193)
T ss_dssp HTEEEEECCCTTCCH
T ss_pred cCEEEecCCCCcCCH
Confidence 469999999999874
No 297
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=37.20 E-value=13 Score=36.17 Aligned_cols=16 Identities=19% Similarity=0.301 Sum_probs=13.7
Q ss_pred CccceeeecccccccC
Q 015472 390 DECTAFLSNINLKASH 405 (406)
Q Consensus 390 ~~~~~f~~n~~~~~~~ 405 (406)
..+||||+||++++++
T Consensus 101 ~~~~lfV~nL~~~~te 116 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTE 116 (437)
T ss_pred CCCEEEEeCCCCCCCH
Confidence 4579999999999875
No 298
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=36.75 E-value=1.6e+02 Score=28.90 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=42.0
Q ss_pred hhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCcc
Q 015472 73 VGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAF 124 (406)
Q Consensus 73 ~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~al~~~~ 124 (406)
....|+..|.+|+..+|.++..|...+. +....++.-.+--.|-|+|.+..
T Consensus 167 ~~~~A~~~Y~~A~~~~P~~G~~~nqLav-la~~~~~~l~a~y~y~rsl~~~~ 217 (497)
T 1ya0_A 167 QTSQAESYYRHAAQLVPSNGQPYNQLAI-LASSKGDHLTTIFYYCRSIAVKF 217 (497)
T ss_dssp CHHHHHHHHHHHHHHCTTBSHHHHHHHH-HHHHTTCHHHHHHHHHHHHSSSB
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHH-HHhcccccHHHHHHHHHHHhcCC
Confidence 3467999999999999999999999997 65667777778788889987643
No 299
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=35.81 E-value=16 Score=29.77 Aligned_cols=17 Identities=12% Similarity=0.216 Sum_probs=14.4
Q ss_pred CCccceeeecccccccC
Q 015472 389 TDECTAFLSNINLKASH 405 (406)
Q Consensus 389 ~~~~~~f~~n~~~~~~~ 405 (406)
...+||||.|||+++++
T Consensus 97 ~~~~~l~v~nlp~~~t~ 113 (175)
T 1fje_B 97 RAARTLLAKNLSFNITE 113 (175)
T ss_dssp GGGGEEEEESCCSSCCH
T ss_pred ccCCEEEEeCCCCCCCH
Confidence 46789999999998874
No 300
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=34.45 E-value=2.2e+02 Score=29.64 Aligned_cols=60 Identities=15% Similarity=-0.028 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 015472 58 DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKS 119 (406)
Q Consensus 58 ~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~~~lW~~y~~~lE~~~~~~e~ar~if~~a 119 (406)
.+-.-=++||.+.+ ..+.|..+-.+|+...|....-|..++..+ ...++++.|.-.+.-|
T Consensus 338 ~LL~~Qa~FLl~K~-~~elAL~~Ak~AV~~aPseF~tW~~La~vY-i~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 338 DLLNIQTNFLLNRG-DYELALGVSNTSTELALDSFESWYNLARCH-IKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSSCHHHHHHHHHHH-HHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccC-cHHHHHHHHHHHHhcCchhhHHHHHHHHHH-HHhccHHHHHHHHhcC
Confidence 34445567777644 688999999999999999999999999844 4589999887555444
No 301
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.92 E-value=60 Score=31.24 Aligned_cols=63 Identities=14% Similarity=0.173 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhh
Q 015472 218 EAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (406)
Q Consensus 218 ~lW~~y~~~E~~~g~~~~ar~l~~ral~~~~~~~~~~~i~~~~i~fE~~~G~~e~~~~a~~k~ 280 (406)
..+...++|....|+++.|..+|.++............++-..++....+||...+...+.+.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 467889999999999999999999998864444556688888899999999988877656554
No 302
>3ul0_C Nuclear CAP-binding protein subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 2.00A {Mus musculus} PDB: 3ukz_C
Probab=33.20 E-value=29 Score=18.57 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=13.1
Q ss_pred ccCCCCccccCCcccccccC
Q 015472 318 RKSDSNISYEQSPAKRQKHA 337 (406)
Q Consensus 318 rk~~~~~~~~~~~~k~~k~~ 337 (406)
|++-.+.++.+.|.||.|..
T Consensus 5 rrrhsdendggq~hkrr~ts 24 (26)
T 3ul0_C 5 RRRHSDENDGGQPHKRRKTS 24 (26)
T ss_dssp CCCCTTSCSSCCCSCCCCCC
T ss_pred ccccccccCCCCcccccccc
Confidence 33444445778899988864
No 303
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=30.95 E-value=2e+02 Score=25.95 Aligned_cols=39 Identities=15% Similarity=0.038 Sum_probs=20.4
Q ss_pred CCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccch
Q 015472 177 NTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM 216 (406)
Q Consensus 177 ~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~~~~~~ 216 (406)
..|.+..+=..+.++++-.| ++++|..-++-+.+.+|..
T Consensus 26 ~~P~da~~R~~LfqLLcv~G-~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 26 ASPKDASLRSSFIELLCIDG-DFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp TCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCGGG
T ss_pred hCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCchh
Confidence 34444444444555555555 5555555555555555543
No 304
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=30.36 E-value=2.8e+02 Score=24.90 Aligned_cols=56 Identities=18% Similarity=0.075 Sum_probs=33.6
Q ss_pred hcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCCCC
Q 015472 35 SSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV 91 (406)
Q Consensus 35 ~~g~~~~~~~lyEral~~~P~~~~lW~~Y~~~l~~~~~~~e~a~~vyerA~~~~P~~ 91 (406)
+.|+++.+....+..|..+|.+.++=..|.+++.-.+ +.++|..-++-+.+..|..
T Consensus 9 ~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G-~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDG-DFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCGGG
T ss_pred hCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCchh
Confidence 4556666666666666666666666666666655433 4555555555555555543
No 305
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=29.97 E-value=1.5e+02 Score=21.23 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=12.3
Q ss_pred HcccHHHHHHHHHHHHh
Q 015472 229 ELDHINEARSIYKRCYS 245 (406)
Q Consensus 229 ~~g~~~~ar~l~~ral~ 245 (406)
..|+++.|..+|..|+.
T Consensus 31 ~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 31 KEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 44777777777777764
No 306
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=29.75 E-value=18 Score=29.31 Aligned_cols=16 Identities=19% Similarity=0.387 Sum_probs=13.6
Q ss_pred CccceeeecccccccC
Q 015472 390 DECTAFLSNINLKASH 405 (406)
Q Consensus 390 ~~~~~f~~n~~~~~~~ 405 (406)
..++|||+|||+++++
T Consensus 94 ~~~~l~v~nl~~~~t~ 109 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTE 109 (175)
T ss_dssp GGSEEEEESCCTTCCH
T ss_pred CCCeEEEcCCCCcCCH
Confidence 5679999999998874
No 307
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=29.63 E-value=18 Score=31.03 Aligned_cols=16 Identities=13% Similarity=0.104 Sum_probs=13.5
Q ss_pred CccceeeecccccccC
Q 015472 390 DECTAFLSNINLKASH 405 (406)
Q Consensus 390 ~~~~~f~~n~~~~~~~ 405 (406)
...|+||+|||++++|
T Consensus 122 p~~~l~v~NLp~~~t~ 137 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTE 137 (205)
T ss_dssp CCSEEEEEEECTTCCH
T ss_pred CcceEEEeCCCCCCCH
Confidence 3569999999999875
No 308
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=27.90 E-value=1.7e+02 Score=20.96 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=13.1
Q ss_pred HcccHHHHHHHHHHHHh
Q 015472 229 ELDHINEARSIYKRCYS 245 (406)
Q Consensus 229 ~~g~~~~ar~l~~ral~ 245 (406)
..|++..|..+|..|+.
T Consensus 23 ~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 45788888888888875
No 309
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=27.59 E-value=20 Score=29.84 Aligned_cols=16 Identities=13% Similarity=0.167 Sum_probs=13.5
Q ss_pred CccceeeecccccccC
Q 015472 390 DECTAFLSNINLKASH 405 (406)
Q Consensus 390 ~~~~~f~~n~~~~~~~ 405 (406)
..+||||+|||+++++
T Consensus 103 ~~~~l~V~nLp~~~t~ 118 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEE 118 (196)
T ss_dssp CCSEEEEECCTTTCCH
T ss_pred CcceEEEeCCCCCCCH
Confidence 4479999999998875
No 310
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=27.56 E-value=21 Score=29.76 Aligned_cols=17 Identities=6% Similarity=0.112 Sum_probs=14.2
Q ss_pred CCccceeeecccccccC
Q 015472 389 TDECTAFLSNINLKASH 405 (406)
Q Consensus 389 ~~~~~~f~~n~~~~~~~ 405 (406)
...+||||+|||+++++
T Consensus 112 ~~~~~l~v~nl~~~~~~ 128 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLND 128 (198)
T ss_dssp CCCCEEEEECCCTTCCH
T ss_pred CCCCEEEEeCCCCCCCH
Confidence 45689999999998764
No 311
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=26.95 E-value=4.1e+02 Score=26.74 Aligned_cols=27 Identities=4% Similarity=-0.151 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 015472 182 LRLYAYWAHLEQSMGKDMVSARGVWERL 209 (406)
Q Consensus 182 ~~l~~~~a~~e~~~~~d~~~Ar~ife~a 209 (406)
...|..+|++....+ +++.|..+|.++
T Consensus 681 ~~~W~~la~~al~~~-~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRF-NFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcC-CHHHHHHHHHHc
Confidence 357777777777777 777777777654
No 312
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=26.52 E-value=16 Score=27.93 Aligned_cols=15 Identities=7% Similarity=0.206 Sum_probs=0.0
Q ss_pred ccceeeecccccccC
Q 015472 391 ECTAFLSNINLKASH 405 (406)
Q Consensus 391 ~~~~f~~n~~~~~~~ 405 (406)
..++||.|||+++|+
T Consensus 97 ~~~lyv~Nl~~~~T~ 111 (115)
T 4f25_A 97 FTNVYIKNFGPGSTR 111 (115)
T ss_dssp ---------------
T ss_pred CCceEeCCCCCCccc
Confidence 347999999999886
No 313
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=25.94 E-value=32 Score=27.75 Aligned_cols=15 Identities=7% Similarity=0.115 Sum_probs=13.2
Q ss_pred ccceeeecccccccC
Q 015472 391 ECTAFLSNINLKASH 405 (406)
Q Consensus 391 ~~~~f~~n~~~~~~~ 405 (406)
..||||+|||+++++
T Consensus 94 ~~~l~v~nlp~~~t~ 108 (172)
T 2g4b_A 94 AHKLFIGGLPNYLND 108 (172)
T ss_dssp TTCEEEECCCTTCCH
T ss_pred CCEEEEEcCCCcCCH
Confidence 679999999998874
No 314
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=25.31 E-value=34 Score=27.37 Aligned_cols=16 Identities=6% Similarity=0.316 Sum_probs=13.4
Q ss_pred CccceeeecccccccC
Q 015472 390 DECTAFLSNINLKASH 405 (406)
Q Consensus 390 ~~~~~f~~n~~~~~~~ 405 (406)
..+||||+|||+++++
T Consensus 88 ~~~~l~v~nl~~~~t~ 103 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITD 103 (168)
T ss_dssp TTCEEEEESCCTTCCH
T ss_pred CCCCEEEeCCCCCCCH
Confidence 4579999999998764
No 315
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=24.47 E-value=25 Score=29.66 Aligned_cols=15 Identities=7% Similarity=0.153 Sum_probs=12.8
Q ss_pred ccceeeecccccccC
Q 015472 391 ECTAFLSNINLKASH 405 (406)
Q Consensus 391 ~~~~f~~n~~~~~~~ 405 (406)
..||||+||++++++
T Consensus 125 ~~~l~v~nlp~~~t~ 139 (216)
T 2qfj_A 125 FNRIYVASVHQDLSD 139 (216)
T ss_dssp SCEEEEECCCTTCCH
T ss_pred CcEEEEeCCCCcCCH
Confidence 469999999998874
No 316
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=23.30 E-value=37 Score=28.26 Aligned_cols=18 Identities=39% Similarity=0.407 Sum_probs=14.6
Q ss_pred CCCccceeeecccccccC
Q 015472 388 FTDECTAFLSNINLKASH 405 (406)
Q Consensus 388 ~~~~~~~f~~n~~~~~~~ 405 (406)
....+||||+|||+++++
T Consensus 117 ~~~~~~l~v~nl~~~~~~ 134 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSE 134 (198)
T ss_dssp CCCCCEEEECCCCTTCCH
T ss_pred CCCccEEEEeCCCCCCCH
Confidence 445789999999998764
No 317
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=22.95 E-value=24 Score=29.40 Aligned_cols=15 Identities=7% Similarity=0.029 Sum_probs=12.8
Q ss_pred ccceeeecccccccC
Q 015472 391 ECTAFLSNINLKASH 405 (406)
Q Consensus 391 ~~~~f~~n~~~~~~~ 405 (406)
-++|||.||++.++|
T Consensus 46 vl~l~VgNL~~~vte 60 (164)
T 1sjr_A 46 VLRIIVENLFYPVTL 60 (164)
T ss_dssp EEEEEECSCCSCCCH
T ss_pred eEEEEEeCcCCCCCH
Confidence 468999999998875
No 318
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=22.83 E-value=2.5e+02 Score=28.48 Aligned_cols=13 Identities=15% Similarity=0.314 Sum_probs=7.1
Q ss_pred cccHHHHHHHHHH
Q 015472 230 LDHINEARSIYKR 242 (406)
Q Consensus 230 ~g~~~~ar~l~~r 242 (406)
.|+++.|..+|..
T Consensus 749 ~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 749 AGDIQGAKDLLIK 761 (814)
T ss_dssp HTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 4555555555544
No 319
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=22.44 E-value=1.6e+02 Score=20.52 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=15.8
Q ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 015472 79 DVYSRATKNCPW-VGELWVRSLLSLERSRASEEEISTVFEKS 119 (406)
Q Consensus 79 ~vyerA~~~~P~-~~~lW~~y~~~lE~~~~~~e~ar~if~~a 119 (406)
.+|++|+..+|. ...-|...+.++ +.+..+++.-|+..
T Consensus 17 k~fe~al~~~p~~t~~RW~~IA~~l---gRt~~eV~~~y~~L 55 (72)
T 2cqq_A 17 SQLTRSMVKFPGGTPGRWEKIAHEL---GRSVTDVTTKAKQL 55 (72)
T ss_dssp HHHHHHHHHSCTTCTTHHHHHHHHH---TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCcHHHHHHHHh---CCCHHHHHHHHHHH
Confidence 344444444442 123444444332 23444444444443
No 320
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=22.08 E-value=2.6e+02 Score=24.34 Aligned_cols=55 Identities=16% Similarity=-0.008 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHhhhh-cCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 015472 157 YSLIRETFQRASDYLSEQM-KNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLK 211 (406)
Q Consensus 157 ~~~~r~~f~~a~~~l~~~~-~~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~ 211 (406)
.+.+..+|+.|.+.....+ ..+|-.+.+.++|+-|....-+++++|..+-..|+.
T Consensus 141 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd 196 (227)
T 2o8p_A 141 LEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGK 196 (227)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5577888999988654323 235556788999999888765599999999888866
No 321
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=21.15 E-value=25 Score=28.21 Aligned_cols=15 Identities=13% Similarity=0.184 Sum_probs=12.8
Q ss_pred ccceeeecccccccC
Q 015472 391 ECTAFLSNINLKASH 405 (406)
Q Consensus 391 ~~~~f~~n~~~~~~~ 405 (406)
..||||+|||+++++
T Consensus 87 ~~~l~V~nlp~~~t~ 101 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRP 101 (167)
T ss_dssp CEEEEEEEECTTCCH
T ss_pred CCeEEECCCCCCCCH
Confidence 469999999998874
No 322
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=20.98 E-value=4.4e+02 Score=23.39 Aligned_cols=52 Identities=8% Similarity=0.031 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhhhhc-CCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 015472 159 LIRETFQRASDYLSEQMK-NTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLK 211 (406)
Q Consensus 159 ~~r~~f~~a~~~l~~~~~-~~~~~~~l~~~~a~~e~~~~~d~~~Ar~ife~al~ 211 (406)
.+..+|+.|.+.. ..+. .+|-.+.+..+|+-|....-+++++|..+-..|+.
T Consensus 174 ~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 174 DALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5677888888765 3332 35556788899999988754489988877666554
No 323
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=20.53 E-value=42 Score=29.80 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=15.0
Q ss_pred CCCCccceeeecccccccC
Q 015472 387 GFTDECTAFLSNINLKASH 405 (406)
Q Consensus 387 ~~~~~~~~f~~n~~~~~~~ 405 (406)
.....+||||.||++++++
T Consensus 203 ~~~~~~~l~v~nl~~~~~~ 221 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNE 221 (282)
T ss_pred CCCCCCEEEEeCCCCcCCH
Confidence 3445789999999998764
Done!