Query 015473
Match_columns 406
No_of_seqs 218 out of 1249
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 06:38:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015473.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015473hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2234 Predicted UDP-galactos 100.0 1E-52 2.2E-57 405.6 35.5 324 25-354 1-327 (345)
2 PF04142 Nuc_sug_transp: Nucle 100.0 9.2E-41 2E-45 317.1 25.5 228 111-340 9-244 (244)
3 PF08449 UAA: UAA transporter 99.9 7.2E-24 1.6E-28 208.0 29.4 292 45-354 4-302 (303)
4 PF06027 DUF914: Eukaryotic pr 99.9 1.9E-22 4.1E-27 198.7 30.3 229 117-353 77-309 (334)
5 KOG1581 UDP-galactose transpor 99.9 5.3E-23 1.2E-27 194.7 25.2 294 37-349 10-313 (327)
6 TIGR00803 nst UDP-galactose tr 99.9 9.5E-24 2.1E-28 197.9 15.8 218 122-347 2-222 (222)
7 PLN00411 nodulin MtN21 family 99.9 2.2E-20 4.7E-25 187.0 35.6 278 52-349 24-328 (358)
8 PRK15430 putative chlorampheni 99.9 2.5E-19 5.4E-24 175.2 31.9 270 44-348 11-284 (296)
9 TIGR00817 tpt Tpt phosphate/ph 99.9 2E-19 4.4E-24 176.1 29.5 253 73-350 31-294 (302)
10 PTZ00343 triose or hexose phos 99.9 5.8E-19 1.2E-23 176.7 33.0 289 32-350 44-349 (350)
11 PRK11453 O-acetylserine/cystei 99.9 2E-18 4.3E-23 169.1 33.2 274 45-351 8-289 (299)
12 KOG3912 Predicted integral mem 99.8 1.4E-18 3E-23 162.7 24.7 305 38-350 3-335 (372)
13 PRK11272 putative DMT superfam 99.8 1.2E-17 2.5E-22 163.1 32.5 269 43-349 10-285 (292)
14 TIGR00950 2A78 Carboxylate/Ami 99.8 3.1E-17 6.7E-22 156.5 29.2 250 56-344 4-259 (260)
15 KOG1580 UDP-galactose transpor 99.8 3E-19 6.5E-24 163.4 14.3 255 74-350 54-314 (337)
16 PRK11689 aromatic amino acid e 99.8 4.2E-17 9E-22 159.5 29.2 270 45-349 8-287 (295)
17 PRK10532 threonine and homoser 99.8 1.3E-16 2.9E-21 155.8 32.2 263 44-350 15-282 (293)
18 TIGR03340 phn_DUF6 phosphonate 99.8 1.4E-16 3E-21 154.7 25.9 273 43-346 3-280 (281)
19 COG0697 RhaT Permeases of the 99.7 4.1E-14 8.9E-19 135.8 33.2 269 48-350 14-288 (292)
20 TIGR00688 rarD rarD protein. T 99.7 1.8E-14 3.8E-19 137.8 28.3 247 44-324 5-255 (256)
21 KOG4510 Permease of the drug/m 99.6 1.6E-16 3.5E-21 148.1 2.8 218 122-348 100-324 (346)
22 COG2962 RarD Predicted permeas 99.5 5.1E-11 1.1E-15 113.4 28.7 271 44-350 10-284 (293)
23 KOG1583 UDP-N-acetylglucosamin 99.5 3.4E-14 7.4E-19 133.3 6.6 230 121-355 66-320 (330)
24 KOG1582 UDP-galactose transpor 99.5 1.4E-12 3.1E-17 122.1 16.8 281 43-350 45-333 (367)
25 KOG1441 Glucose-6-phosphate/ph 99.5 5E-13 1.1E-17 130.7 12.4 223 121-355 85-313 (316)
26 KOG2765 Predicted membrane pro 99.4 2.2E-11 4.9E-16 118.9 19.3 228 121-353 161-394 (416)
27 KOG1443 Predicted integral mem 99.4 5.7E-11 1.2E-15 113.3 21.0 262 66-349 39-315 (349)
28 TIGR00776 RhaT RhaT L-rhamnose 99.4 5.4E-10 1.2E-14 109.2 27.0 267 43-348 3-287 (290)
29 KOG1444 Nucleotide-sugar trans 99.3 6.3E-10 1.4E-14 107.3 22.6 225 118-356 76-307 (314)
30 KOG2766 Predicted membrane pro 99.2 6.7E-12 1.5E-16 116.8 1.7 215 122-348 81-298 (336)
31 KOG1442 GDP-fucose transporter 99.0 1.2E-10 2.5E-15 109.6 4.0 267 73-357 61-335 (347)
32 PF03151 TPT: Triose-phosphate 98.9 5.4E-08 1.2E-12 85.3 15.3 138 209-349 1-153 (153)
33 COG2510 Predicted membrane pro 98.8 3.6E-08 7.9E-13 83.0 10.9 133 45-191 7-139 (140)
34 COG5070 VRG4 Nucleotide-sugar 98.8 2.1E-07 4.6E-12 85.5 16.6 231 120-357 69-304 (309)
35 PF13536 EmrE: Multidrug resis 98.8 1.6E-07 3.4E-12 78.8 14.3 71 123-194 38-109 (113)
36 PF00892 EamA: EamA-like trans 98.8 7.5E-08 1.6E-12 80.6 11.2 121 53-189 3-124 (126)
37 COG5006 rhtA Threonine/homoser 98.7 4.1E-05 8.8E-10 72.0 27.3 205 121-349 73-282 (292)
38 PF03151 TPT: Triose-phosphate 98.6 2.8E-06 6.1E-11 74.3 15.1 146 44-189 3-151 (153)
39 KOG4314 Predicted carbohydrate 98.5 1.9E-06 4.2E-11 77.9 13.1 214 126-353 60-280 (290)
40 PF05653 Mg_trans_NIPA: Magnes 98.4 2.8E-05 6E-10 76.4 17.8 65 127-191 58-122 (300)
41 PF06800 Sugar_transport: Suga 98.3 5.8E-05 1.3E-09 72.5 19.2 214 120-346 46-268 (269)
42 TIGR00950 2A78 Carboxylate/Ami 98.3 2.6E-05 5.7E-10 74.1 16.5 129 44-187 131-260 (260)
43 PF00892 EamA: EamA-like trans 98.2 1.5E-05 3.3E-10 66.4 11.6 119 219-348 2-125 (126)
44 PRK15051 4-amino-4-deoxy-L-ara 98.2 1.3E-05 2.9E-10 67.1 10.7 65 126-190 44-108 (111)
45 TIGR00817 tpt Tpt phosphate/ph 98.1 2.9E-05 6.4E-10 76.0 12.7 140 45-193 149-295 (302)
46 PTZ00343 triose or hexose phos 98.1 6.1E-05 1.3E-09 75.6 13.7 144 44-190 197-347 (350)
47 COG2510 Predicted membrane pro 98.1 3.2E-05 6.9E-10 65.5 9.5 127 210-347 5-137 (140)
48 PLN00411 nodulin MtN21 family 98.0 0.00027 5.9E-09 71.2 15.9 64 130-193 267-330 (358)
49 PRK02971 4-amino-4-deoxy-L-ara 97.9 0.00076 1.7E-08 58.0 15.9 121 209-352 3-125 (129)
50 PRK10532 threonine and homoser 97.9 0.00057 1.2E-08 66.7 17.2 65 129-193 219-283 (293)
51 PRK11689 aromatic amino acid e 97.9 0.00045 9.8E-09 67.5 15.3 68 125-192 221-288 (295)
52 PRK11272 putative DMT superfam 97.9 0.00056 1.2E-08 66.7 15.9 64 129-192 223-286 (292)
53 TIGR03340 phn_DUF6 phosphonate 97.8 0.00062 1.4E-08 66.0 15.3 129 210-349 3-135 (281)
54 PRK02971 4-amino-4-deoxy-L-ara 97.8 0.00056 1.2E-08 58.9 13.1 72 122-193 50-124 (129)
55 PF08449 UAA: UAA transporter 97.7 0.0016 3.4E-08 64.0 16.7 139 44-192 157-298 (303)
56 PRK10452 multidrug efflux syst 97.6 0.00048 1E-08 58.5 10.0 73 121-193 32-105 (120)
57 PRK11453 O-acetylserine/cystei 97.6 0.003 6.4E-08 61.9 16.8 63 130-192 226-288 (299)
58 PRK09541 emrE multidrug efflux 97.6 0.0008 1.7E-08 56.3 10.5 72 121-192 32-104 (110)
59 PRK11431 multidrug efflux syst 97.6 0.00075 1.6E-08 55.9 10.1 71 121-191 31-102 (105)
60 TIGR00776 RhaT RhaT L-rhamnose 97.6 0.0012 2.7E-08 64.5 13.2 132 38-190 151-287 (290)
61 COG2076 EmrE Membrane transpor 97.6 0.00089 1.9E-08 55.3 10.1 72 120-191 31-103 (106)
62 PRK10650 multidrug efflux syst 97.5 0.0011 2.3E-08 55.3 9.9 71 120-190 36-107 (109)
63 PRK15430 putative chlorampheni 97.5 0.0039 8.5E-08 60.9 15.5 64 128-191 222-285 (296)
64 TIGR00688 rarD rarD protein. T 97.2 0.011 2.3E-07 56.4 15.2 132 209-347 3-140 (256)
65 PRK15051 4-amino-4-deoxy-L-ara 97.1 0.004 8.7E-08 52.1 9.7 61 288-348 48-108 (111)
66 PRK10452 multidrug efflux syst 97.1 0.0059 1.3E-07 51.8 10.3 66 285-350 38-104 (120)
67 PF10639 UPF0546: Uncharacteri 97.1 0.0041 9E-08 52.1 8.9 70 120-189 42-112 (113)
68 PRK09541 emrE multidrug efflux 97.0 0.0098 2.1E-07 49.7 10.5 63 288-350 41-104 (110)
69 PF13536 EmrE: Multidrug resis 96.9 0.013 2.9E-07 48.7 10.7 60 289-349 47-106 (113)
70 PRK13499 rhamnose-proton sympo 96.8 0.62 1.4E-05 46.7 30.9 223 122-347 76-339 (345)
71 PF06800 Sugar_transport: Suga 96.8 0.021 4.6E-07 55.1 12.7 120 38-180 137-256 (269)
72 KOG1441 Glucose-6-phosphate/ph 96.8 0.0025 5.4E-08 62.9 6.5 150 32-190 156-306 (316)
73 PF00893 Multi_Drug_Res: Small 96.8 0.0057 1.2E-07 49.5 7.3 61 122-182 32-93 (93)
74 KOG2922 Uncharacterized conser 96.8 0.0078 1.7E-07 58.8 9.2 67 126-192 71-137 (335)
75 COG0697 RhaT Permeases of the 96.7 0.077 1.7E-06 50.5 15.9 72 121-192 216-288 (292)
76 PRK10650 multidrug efflux syst 96.7 0.1 2.2E-06 43.6 14.2 62 286-347 44-106 (109)
77 COG2076 EmrE Membrane transpor 96.4 0.12 2.7E-06 42.7 13.0 62 288-349 41-103 (106)
78 PRK11431 multidrug efflux syst 96.4 0.038 8.2E-07 45.8 10.0 61 288-348 40-101 (105)
79 PF06027 DUF914: Eukaryotic pr 96.3 0.18 3.9E-06 50.4 15.8 63 288-350 90-152 (334)
80 COG5006 rhtA Threonine/homoser 96.3 0.014 3.1E-07 55.2 7.4 59 131-189 222-280 (292)
81 PF05653 Mg_trans_NIPA: Magnes 96.3 0.055 1.2E-06 53.3 12.0 116 207-348 6-121 (300)
82 TIGR00803 nst UDP-galactose tr 96.0 0.081 1.8E-06 49.3 11.0 67 121-187 154-220 (222)
83 PF04657 DUF606: Protein of un 95.7 0.81 1.8E-05 39.7 15.6 130 211-346 4-138 (138)
84 KOG1581 UDP-galactose transpor 95.4 0.21 4.5E-06 48.7 11.5 129 46-188 181-310 (327)
85 PRK13499 rhamnose-proton sympo 95.4 0.25 5.5E-06 49.5 12.5 137 207-350 6-154 (345)
86 PF00893 Multi_Drug_Res: Small 95.3 0.23 5E-06 40.0 10.1 52 289-340 41-93 (93)
87 COG2962 RarD Predicted permeas 95.2 0.93 2E-05 44.0 15.2 130 47-191 154-283 (293)
88 KOG1580 UDP-galactose transpor 95.1 0.16 3.5E-06 47.8 9.3 68 121-188 243-310 (337)
89 PF10639 UPF0546: Uncharacteri 94.0 0.14 3.1E-06 42.9 5.7 64 283-346 47-111 (113)
90 PF04142 Nuc_sug_transp: Nucle 93.7 0.47 1E-05 45.3 9.6 66 288-353 28-93 (244)
91 PF04657 DUF606: Protein of un 93.2 3.7 8.1E-05 35.6 13.6 128 45-188 5-138 (138)
92 COG3238 Uncharacterized protei 93.2 5.7 0.00012 35.0 15.4 133 209-349 6-146 (150)
93 PF07857 DUF1632: CEO family ( 90.8 1.6 3.5E-05 41.9 9.2 66 288-353 66-138 (254)
94 PF06379 RhaT: L-rhamnose-prot 89.2 6.5 0.00014 39.2 12.1 138 207-353 6-157 (344)
95 KOG2922 Uncharacterized conser 87.9 0.27 5.8E-06 48.3 1.6 70 278-347 65-134 (335)
96 COG5070 VRG4 Nucleotide-sugar 87.1 4 8.7E-05 38.4 8.6 107 73-189 185-294 (309)
97 COG4975 GlcU Putative glucose 87.0 0.33 7.1E-06 46.1 1.6 90 78-181 182-271 (288)
98 KOG1444 Nucleotide-sugar trans 85.8 4.3 9.4E-05 40.0 8.6 115 71-191 185-300 (314)
99 COG4975 GlcU Putative glucose 85.7 0.32 7E-06 46.1 0.8 125 209-349 3-136 (288)
100 KOG4510 Permease of the drug/m 84.5 0.54 1.2E-05 45.2 1.7 62 290-351 110-171 (346)
101 KOG4831 Unnamed protein [Funct 83.4 3 6.5E-05 34.4 5.3 69 120-188 53-122 (125)
102 PF04342 DUF486: Protein of un 74.7 5.6 0.00012 32.8 4.4 42 305-346 64-105 (108)
103 KOG2765 Predicted membrane pro 73.1 65 0.0014 32.8 12.2 67 127-193 326-392 (416)
104 KOG1442 GDP-fucose transporter 71.7 4.2 9.2E-05 39.4 3.5 106 76-187 218-323 (347)
105 KOG1582 UDP-galactose transpor 69.4 48 0.001 32.3 9.9 110 73-193 220-334 (367)
106 KOG3912 Predicted integral mem 61.9 1.2E+02 0.0027 29.7 11.2 60 289-348 98-157 (372)
107 PF04342 DUF486: Protein of un 61.7 22 0.00047 29.4 5.3 52 137-188 53-105 (108)
108 COG3169 Uncharacterized protei 61.5 36 0.00077 27.8 6.4 43 306-348 72-114 (116)
109 KOG4831 Unnamed protein [Funct 60.0 12 0.00026 31.0 3.5 52 296-347 71-123 (125)
110 KOG1443 Predicted integral mem 59.7 1.2E+02 0.0026 30.1 10.8 73 117-189 241-313 (349)
111 COG3238 Uncharacterized protei 59.5 1.3E+02 0.0027 26.6 13.6 73 119-191 69-146 (150)
112 PF05961 Chordopox_A13L: Chord 45.0 25 0.00055 26.5 2.9 20 331-350 4-23 (68)
113 PF03119 DNA_ligase_ZBD: NAD-d 43.4 8.6 0.00019 23.9 0.2 17 7-23 1-17 (28)
114 TIGR02865 spore_II_E stage II 42.6 5.3E+02 0.012 28.9 16.5 44 146-189 11-54 (764)
115 COG3169 Uncharacterized protei 38.1 2.3E+02 0.0049 23.3 11.0 61 129-189 52-113 (116)
116 COG0004 AmtB Ammonia permease 35.4 3.8E+02 0.0081 27.7 10.5 77 157-234 171-254 (409)
117 PF00909 Ammonium_transp: Ammo 33.5 1.8E+02 0.004 29.6 8.2 93 140-233 144-247 (399)
118 PRK02237 hypothetical protein; 32.8 87 0.0019 26.1 4.5 38 156-193 70-107 (109)
119 COG5319 Uncharacterized protei 31.8 16 0.00035 31.1 0.1 15 3-17 30-44 (142)
120 PF02694 UPF0060: Uncharacteri 29.7 3.3E+02 0.0071 22.6 10.0 47 302-348 54-102 (107)
121 KOG1583 UDP-N-acetylglucosamin 27.4 3.1E+02 0.0067 27.0 7.9 67 124-190 238-313 (330)
122 PF02694 UPF0060: Uncharacteri 27.3 1.1E+02 0.0023 25.4 4.2 42 152-193 64-105 (107)
123 TIGR03644 marine_trans_1 proba 26.4 7.3E+02 0.016 25.6 13.3 21 213-233 246-266 (404)
124 PTZ00074 60S ribosomal protein 26.4 47 0.001 28.8 2.0 36 4-39 40-88 (135)
125 PRK04059 rpl34e 50S ribosomal 25.7 38 0.00083 27.1 1.3 30 4-33 33-75 (88)
126 PF05297 Herpes_LMP1: Herpesvi 25.5 23 0.0005 34.4 0.0 95 137-240 41-137 (381)
127 TIGR02098 MJ0042_CXXC MJ0042 f 24.6 36 0.00078 22.2 0.8 12 4-15 24-35 (38)
128 PF13719 zinc_ribbon_5: zinc-r 24.0 28 0.00061 22.9 0.2 17 5-21 2-18 (37)
129 TIGR00836 amt ammonium transpo 23.6 7.3E+02 0.016 25.5 10.5 91 141-233 153-252 (403)
130 PF06676 DUF1178: Protein of u 23.4 31 0.00067 30.4 0.4 16 2-17 29-44 (148)
131 PF05077 DUF678: Protein of un 22.9 25 0.00055 26.9 -0.2 16 5-20 25-40 (74)
132 PF09889 DUF2116: Uncharacteri 22.8 69 0.0015 23.6 2.1 10 7-16 5-14 (59)
133 PF01199 Ribosomal_L34e: Ribos 21.4 55 0.0012 26.6 1.4 34 5-38 41-87 (94)
134 PHA03049 IMV membrane protein; 20.8 1.4E+02 0.003 22.6 3.3 25 331-356 4-28 (68)
135 PF13347 MFS_2: MFS/sugar tran 20.4 6.8E+02 0.015 25.1 9.6 20 165-184 281-300 (428)
136 COG4896 Uncharacterized protei 20.2 33 0.00072 25.4 -0.1 23 5-30 31-53 (68)
No 1
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-52 Score=405.60 Aligned_cols=324 Identities=30% Similarity=0.461 Sum_probs=268.4
Q ss_pred hhhccCCcccchhhHHHHHHHHHHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 015473 25 RAYDRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEK 104 (406)
Q Consensus 25 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~ 104 (406)
|++|+|....+.++ ...+ .++...++.+.+..++++++.+++.+|.|+++||+.|++|+++|..+++++.++. .++
T Consensus 1 ~~~~~~~~~~~~~~-~k~~-~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~--~~~ 76 (345)
T KOG2234|consen 1 MAVKSMPIISSLSQ-MKYL-SLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKY--AKK 76 (345)
T ss_pred CCcccccccccHHH-HHHH-HHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHH--hhh
Confidence 45666666666666 4333 3344455666777788888866578899999999999999999999999986431 112
Q ss_pred Ccchh-HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 015473 105 PLLSI-STFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLL 183 (406)
Q Consensus 105 ~~l~~-~~~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~ 183 (406)
+.... +.++..+|+.++.++||++|++||+++|++++|+|+++||+..|+|+++||+|++++|+||++++||.|+++++
T Consensus 77 ~~~~l~~~i~~~~~~~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~ 156 (345)
T KOG2234|consen 77 SLKSLSKEILAAPRETLKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLF 156 (345)
T ss_pred hhhhcCHHHHhChHHHHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 21111 23445667899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCCCCCCCC--CCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 015473 184 IGISVNQLRSLPEGST--AMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVT 261 (406)
Q Consensus 184 ~GV~lv~~~~~~~~~~--~~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~ 261 (406)
+|+.++|.+..+..+. .........|+..++.+|++||++++|+||++|+. +.+.|+||+|++++|+++++......
T Consensus 157 ~Gv~~vQ~~~~~~~~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s-~~s~wi~NiqL~~~g~~f~~l~~~~~ 235 (345)
T KOG2234|consen 157 AGVALVQLPSLSPTGAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGS-NVSLWIRNIQLYFFGILFNLLTILLQ 235 (345)
T ss_pred HHHHHHhccCCCCCCccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999543221111 11122346799999999999999999999999985 68999999999999999999887643
Q ss_pred HHhcCCCccccccCChHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Q 015473 262 AIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVF 341 (406)
Q Consensus 262 ~~~~~~~~~~~~~g~~~~~~l~i~~~aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi 341 (406)
...++. +.|+|+||++.+|++++.+|+||+++++++||+||+.|++++++++++++++|+.+||.+||..+++|+.+|+
T Consensus 236 d~~~i~-~~gff~G~s~~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi 314 (345)
T KOG2234|consen 236 DGEAIN-EYGFFYGYSSIVWLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVI 314 (345)
T ss_pred cccccc-cCCccccccHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHH
Confidence 111122 5689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccccc
Q 015473 342 ISMHQFFSSLSKA 354 (406)
Q Consensus 342 ~gv~ly~~~~~~~ 354 (406)
.++++|+.+|++.
T Consensus 315 ~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 315 LSIFLYSLYPARD 327 (345)
T ss_pred HHHHHhhcCCccc
Confidence 9999999765543
No 2
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=100.00 E-value=9.2e-41 Score=317.11 Aligned_cols=228 Identities=33% Similarity=0.555 Sum_probs=200.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 015473 111 TFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQ 190 (406)
Q Consensus 111 ~~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~ 190 (406)
+.++..|+.+++++||++|+++|++.|++++++||+++|+++|+|+++||++++++||||++++||+|++++++|+++++
T Consensus 9 ~~~~~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~ 88 (244)
T PF04142_consen 9 EVWKSPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQ 88 (244)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheee
Confidence 34466788899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCC--CCCC------CccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 015473 191 LRSLPEGS--TAMG------LPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTA 262 (406)
Q Consensus 191 ~~~~~~~~--~~~~------~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~ 262 (406)
.++....+ +... ......|+++++++++++|+++||+||++|++ +.|+|.||+|++++|++++++.....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~-~~s~~~~N~qL~~~gi~~~~~~~~~~- 166 (244)
T PF04142_consen 89 LSSSQSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRS-NVSLWIQNMQLYLFGILFNLLALLLS- 166 (244)
T ss_pred cCCccccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 77643211 1111 12245799999999999999999999999986 58999999999999999998775431
Q ss_pred HhcCCCccccccCChHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Q 015473 263 IFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIV 340 (406)
Q Consensus 263 ~~~~~~~~~~~~g~~~~~~l~i~~~aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LV 340 (406)
.++...+.|+|+||++++|.+++.+++||+++++++||+||+.|+++++.+++++.++|+++||.+||..+++|..+|
T Consensus 167 ~~~~~~~~g~f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 167 DGSAISESGFFHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred cccccccCCchhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 112223468999999999999999999999999999999999999999999999999999999999999999998765
No 3
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.93 E-value=7.2e-24 Score=207.96 Aligned_cols=292 Identities=17% Similarity=0.225 Sum_probs=215.1
Q ss_pred HHHHHHHHHhhHhHhhhh-cccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHHH
Q 015473 45 LVVGDCMLVGLQPILVYM-SKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLA 123 (406)
Q Consensus 45 l~~~~~~~~~~~~~l~k~-s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~ 123 (406)
++.+.+..+.+++++.+. .+.+... -.+..+.+.+.+.-.+++.......+..+ .+. +....++
T Consensus 4 ~~~~i~~~~~~~g~~qE~i~~~~~~~-~~~~~lt~~q~~~~~~~~~~~~~~~~~~~----~~~----------~~~~~~~ 68 (303)
T PF08449_consen 4 CVAGIFGGCCSYGILQEKIMTTPYGS-PFPLFLTFVQFAFNALFSFILLSLFKFPK----SRK----------IPLKKYA 68 (303)
T ss_pred eHHHHHHHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHHHHHHHHHHHHHhccccC----CCc----------ChHHHHH
Confidence 344444455555555442 2222211 13667889999999988887766554111 110 1123688
Q ss_pred HHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCC
Q 015473 124 VPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGL 203 (406)
Q Consensus 124 vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~~~~ 203 (406)
++++++.+.+.+.+.+++|+|.+++++++++||+++++++++++|||++++||+++++.++|+++....+..+.......
T Consensus 69 ~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~ 148 (303)
T PF08449_consen 69 ILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSS 148 (303)
T ss_pred HHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999876553222111111
Q ss_pred -ccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CccccccCChHHH
Q 015473 204 -PVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGP--DNLDILQGHSKAT 280 (406)
Q Consensus 204 -~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~--~~~~~~~g~~~~~ 280 (406)
.....|+++.+++.+++|+.++++||+++++ +.+.+....+.++++.++.++.... +..++ +...+...++...
T Consensus 149 ~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~-~~~~~~~mfy~n~~~~~~~~~~~~~--l~~~~~~~~~~f~~~~p~~~ 225 (303)
T PF08449_consen 149 SFSSALGIILLLLSLLLDAFTGVYQEKLFKKY-GKSPWELMFYTNLFSLPFLLILLFL--LPTGEFRSAIRFISAHPSVL 225 (303)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHHHHHH--HHhhHhhHHHHHHHHhHHHH
Confidence 1112388999999999999999999999886 5566777888888888877665543 00121 1112222333222
Q ss_pred H---HHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccccccc
Q 015473 281 M---LLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKA 354 (406)
Q Consensus 281 ~---l~i~~~aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~~~~~ 354 (406)
+ +..+.+++|+..+....+..++......++++.+++.++|+++||+++++.+++|.++|+.|+.+|+.+.+||
T Consensus 226 ~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 226 LYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 2 2235667788888888999999999999999999999999999999999999999999999999999864443
No 4
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.92 E-value=1.9e-22 Score=198.74 Aligned_cols=229 Identities=16% Similarity=0.181 Sum_probs=181.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCC
Q 015473 117 RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPE 196 (406)
Q Consensus 117 r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~ 196 (406)
++.+++.+.|++++..|.+...|++|++.+.++++.++.+++++++|+++||+|+++.||+|+++.++|+.++...+...
T Consensus 77 ~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~ 156 (334)
T PF06027_consen 77 RPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLS 156 (334)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999886665432
Q ss_pred CCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCC
Q 015473 197 GSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGH 276 (406)
Q Consensus 197 ~~~~~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~ 276 (406)
+++..+.+....|.+++++++++.|+++|+.|+..|+. +......+++++|.+++.+... +.|..+-.. + .|
T Consensus 157 ~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~---~~~~~lg~~Glfg~ii~~iq~~---ile~~~i~~-~-~w 228 (334)
T PF06027_consen 157 GSDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKA---PRVEFLGMLGLFGFIISGIQLA---ILERSGIES-I-HW 228 (334)
T ss_pred cccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccC---CHHHHHHHHHHHHHHHHHHHHH---heehhhhhc-c-CC
Confidence 22221223346799999999999999999999999863 4555667888899888876554 244332111 1 22
Q ss_pred hHHHHHHH----HHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccccc
Q 015473 277 SKATMLLI----FNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLS 352 (406)
Q Consensus 277 ~~~~~l~i----~~~aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~~~ 352 (406)
++..+... +...+...++..++++.++...+....++.+++.+.++++||+++++..++|.++|+.|..+|+..++
T Consensus 229 ~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~ 308 (334)
T PF06027_consen 229 TSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAES 308 (334)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence 32222221 12223445667888999988888888889999999999999999999999999999999999997554
Q ss_pred c
Q 015473 353 K 353 (406)
Q Consensus 353 ~ 353 (406)
+
T Consensus 309 ~ 309 (334)
T PF06027_consen 309 P 309 (334)
T ss_pred c
Confidence 4
No 5
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.92 E-value=5.3e-23 Score=194.65 Aligned_cols=294 Identities=15% Similarity=0.196 Sum_probs=236.2
Q ss_pred hhHHHHHHHHHHHHHHHhhHhHhhh-hcc----cCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHH
Q 015473 37 KQRVLNVFLVVGDCMLVGLQPILVY-MSK----VDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSIST 111 (406)
Q Consensus 37 k~~~l~~ll~~~~~~~~~~~~~l~k-~s~----~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~ 111 (406)
+....+++|+.+.+..|..++++++ ... +|+++.-++.-.+|.+.++.++++..++..++.. ..+..|
T Consensus 10 ~~~~~L~~c~~GI~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~-~~~~ap------ 82 (327)
T KOG1581|consen 10 NKIILLVFCFSGIYATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWWKKE-LSGVAP------ 82 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhccccc-CCCCCc------
Confidence 3344458899999999999998854 322 2444444666789999999999998877655432 111111
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 015473 112 FIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQL 191 (406)
Q Consensus 112 ~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~ 191 (406)
.+.+...+..+.+...|+|.||+|++.++..+.+++|++.++++..++.|+|++..++++.++...||.++.+
T Consensus 83 -------l~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l 155 (327)
T KOG1581|consen 83 -------LYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSL 155 (327)
T ss_pred -------hhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEE
Confidence 2368899999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--c
Q 015473 192 RSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPD--N 269 (406)
Q Consensus 192 ~~~~~~~~~~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~--~ 269 (406)
.+.+++....+.+...+|+.++...-+++|+.+..++++.|++ +.+.+.++..+++++.+.+...++. +|.. +
T Consensus 156 ~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~-k~s~~~mM~~vNLf~~i~~~~~li~----qg~~~~a 230 (327)
T KOG1581|consen 156 FPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKY-KVSSLHMMFGVNLFSAILNGTYLIL----QGHLLPA 230 (327)
T ss_pred ecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccC-CccHhHHHHHHHHHHHHHHHHhhhc----CCCCchH
Confidence 6544333344555567899999999999999999999999975 7888989999999999999877542 3321 2
Q ss_pred cccccCChHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHH
Q 015473 270 LDILQGHSKATMLL---IFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQ 346 (406)
Q Consensus 270 ~~~~~g~~~~~~l~---i~~~aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~l 346 (406)
..|...++...+-+ -...++|+.++.+.++..++++-...++++-++++++|.++||++++..+++|..+|+.|+++
T Consensus 231 v~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 231 VSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred HHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 23444444333333 356788999999999999999999999999999999999999999999999999999999986
Q ss_pred hcc
Q 015473 347 FFS 349 (406)
Q Consensus 347 y~~ 349 (406)
=..
T Consensus 311 ~~~ 313 (327)
T KOG1581|consen 311 EIL 313 (327)
T ss_pred HHH
Confidence 544
No 6
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.91 E-value=9.5e-24 Score=197.95 Aligned_cols=218 Identities=23% Similarity=0.312 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCC
Q 015473 122 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAM 201 (406)
Q Consensus 122 ~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~~ 201 (406)
+.+|+..|+.+|.+.++++.+.++...+.. |.|++.++++....++++++..||.++.++..|+..++.++..+....
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~-~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~- 79 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVT-QLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLM- 79 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeee-hHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccc-
Confidence 468999999999999999999999999999 999999999999999999999999999999999998865542211111
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CccccccCChH
Q 015473 202 GLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGP---DNLDILQGHSK 278 (406)
Q Consensus 202 ~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~---~~~~~~~g~~~ 278 (406)
......|..+.+.++++++++++|.|+..|.+ +.+.|.+|+++++++.+.+...... .+. ...+++++++.
T Consensus 80 -~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~-~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 153 (222)
T TIGR00803 80 -FGNPVVGLSAVLSALLSSGFAGVYFEKILKDG-DTMFWSRNLQLPLFGLFSTFSVLLW----SDGTLISNFGFFIGYPT 153 (222)
T ss_pred -cccHHHHHHHHHHHHHHHhhhHHHHHHcccCC-CCchHHHHHHHHHHHHHHHHHHHhh----cccchhhccCcccCCch
Confidence 11234577778888999999999999997764 5779999999999998866543332 221 13456788998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHh
Q 015473 279 ATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQF 347 (406)
Q Consensus 279 ~~~l~i~~~aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly 347 (406)
..|..++.++++|+++++++||+|+++|+++++++++++.++|+++|||+++..+++|+.+|+.|+++|
T Consensus 154 ~~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 154 AVWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 999999999999999999999999999999999999999999999999999999999999999999887
No 7
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.90 E-value=2.2e-20 Score=187.02 Aligned_cols=278 Identities=14% Similarity=0.137 Sum_probs=187.7
Q ss_pred HHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHHHHHHHHHHH
Q 015473 52 LVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAI 131 (406)
Q Consensus 52 ~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~vpAlly~~ 131 (406)
.|+.+.++.|.+-++| .++...+++|-.+.-++..++...+++... +|... +|+...+++.+++.++
T Consensus 24 ~~~~~~~~~k~a~~~G---~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~---~~~~~-------~~~~~~l~l~g~~g~~ 90 (358)
T PLN00411 24 SVVGISTLFKVATSKG---LNIYPFLGYSYLLASLLLLPSLFFTNRSRS---LPPLS-------VSILSKIGLLGFLGSM 90 (358)
T ss_pred HHHHHHHHHHHHHHCC---CCccHHHHHHHHHHHHHHHHHHHHHHHhcc---cCcch-------HHHHHHHHHHHHHHHH
Confidence 3666667777665443 456677899988887666665544332111 11111 1333456777776667
Q ss_pred HHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHH------hCCCCCHHHHHHHHHHHHHHhhhccCCCCCC--------
Q 015473 132 NNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKII------MRRRFSIIQWEALALLLIGISVNQLRSLPEG-------- 197 (406)
Q Consensus 132 ~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~------Lkerls~~qwlal~ll~~GV~lv~~~~~~~~-------- 197 (406)
++.+.|++++|++++.+.++.++.|++|+++++++ +|||++++||+++++.++|++++...+....
T Consensus 91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~ 170 (358)
T PLN00411 91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPY 170 (358)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccc
Confidence 88899999999999999999999999999999999 6999999999999999999988754321100
Q ss_pred ------C--CCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHH-HHHHHHHHHHHHHhcCCC
Q 015473 198 ------S--TAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYG-AIFNFLGILVTAIFKGPD 268 (406)
Q Consensus 198 ------~--~~~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g-~l~~l~~~~~~~~~~~~~ 268 (406)
. ...+......|.++.++++++++++.+..++..+++ .+....+.+....+ ..+..+.. ..++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~l----~~~~~~ 244 (358)
T PLN00411 171 LNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEY--PAAFTVSFLYTVCVSIVTSMIGL----VVEKNN 244 (358)
T ss_pred ccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CcHhHHHHHHHHHHHHHHHHHHH----HHccCC
Confidence 0 000111123488889999999999999999987764 23323333333332 22222222 223221
Q ss_pred ccccccCChHHHHHHHHHHHH----HHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHH
Q 015473 269 NLDILQGHSKATMLLIFNNAA----QGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISM 344 (406)
Q Consensus 269 ~~~~~~g~~~~~~l~i~~~ai----gg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv 344 (406)
.......++...+ .+++.++ +..+-.+.+|+.++...+...++.+++++++|++++||++++.+++|+++|+.|+
T Consensus 245 ~~~~~~~~~~~~~-~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv 323 (358)
T PLN00411 245 PSVWIIHFDITLI-TIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGF 323 (358)
T ss_pred cccceeccchHHH-HHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 1111122332222 2333333 3333445677888888899999999999999999999999999999999999999
Q ss_pred HHhcc
Q 015473 345 HQFFS 349 (406)
Q Consensus 345 ~ly~~ 349 (406)
++...
T Consensus 324 ~l~~~ 328 (358)
T PLN00411 324 YAVMW 328 (358)
T ss_pred HHHHh
Confidence 99876
No 8
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.87 E-value=2.5e-19 Score=175.25 Aligned_cols=270 Identities=15% Similarity=0.193 Sum_probs=184.4
Q ss_pred HHHHHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHHH
Q 015473 44 FLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLA 123 (406)
Q Consensus 44 ll~~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~ 123 (406)
++++..++.|+.+++..|.. + + ++|.++++.|-++..++...++..+++. +..+ +.+ +..++.....
T Consensus 11 ~~~l~a~~~wg~~~~~~k~~--~-~--~~~~~~~~~R~~~a~~~l~~~~~~~~~~------~~~~-~~~-~~~~~~~~~~ 77 (296)
T PRK15430 11 LLALAAYFIWGIAPAYFKLI--Y-Y--VPADEILTHRVIWSFFFMVVLMSICRQW------SYLK-TLI-QTPQKIFMLA 77 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHh--c-C--CCHHHHHHHHHHHHHHHHHHHHHHHccH------HHHH-HHH-cCHHHHHHHH
Confidence 45666777899999888875 2 2 6799999999999877555544332210 0000 001 1122222344
Q ss_pred HHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCC
Q 015473 124 VPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGL 203 (406)
Q Consensus 124 vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~~~~ 203 (406)
..++..++++.++|++++++|+++..++.++.|+++++++++++|||++++||.+++++++|+.++..+. ++ .
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~---~~----~ 150 (296)
T PRK15430 78 VSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTF---GS----L 150 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHc---CC----c
Confidence 5667788999999999999999999999999999999999999999999999999999999999874321 11 1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHH
Q 015473 204 PVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLL 283 (406)
Q Consensus 204 ~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 283 (406)
.++++++++++|++.++.|+..++. .......+.+...++.+. ... ....+.. .....++..|..
T Consensus 151 ------~~~~l~aa~~~a~~~i~~r~~~~~~-~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~--~~~~~~~~~~~~ 215 (296)
T PRK15430 151 ------PIIALGLAFSFAFYGLVRKKIAVEA-QTGMLIETMWLLPVAAIY----LFA--IADSSTS--HMGQNPMSLNLL 215 (296)
T ss_pred ------cHHHHHHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHHHHH----HHH--HccCCcc--cccCCcHHHHHH
Confidence 1346778889999998888864321 122233333333333222 110 1111110 011111111111
Q ss_pred H----HHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhc
Q 015473 284 I----FNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFF 348 (406)
Q Consensus 284 i----~~~aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~ 348 (406)
+ +..+++..+....+|+.++...+...+..++++.++|++++||+|+..+++|+++|+.++-+..
T Consensus 216 ~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~ 284 (296)
T PRK15430 216 LIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFV 284 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 1 2344566778888899999999999999999999999999999999999999999987665443
No 9
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.87 E-value=2e-19 Score=176.12 Aligned_cols=253 Identities=11% Similarity=0.142 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHh
Q 015473 73 PISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLS 152 (406)
Q Consensus 73 ~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~ 152 (406)
|..+.+.+-++..+++..+ .+.+.+. ++..+. ++.......+++++.++.+.+++++|++++.++++.
T Consensus 31 P~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~-------~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~ 98 (302)
T TIGR00817 31 PYFKTLISLAVGSLYCLLS-WSSGLPK----RLKISS-------ALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIK 98 (302)
T ss_pred hHHHHHHHHHHHHHHHHHH-HHhCCCC----CCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 5667778877776554443 2111111 111211 233356667788889999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015473 153 NLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALK 232 (406)
Q Consensus 153 ~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~~~~~~~~~G~ll~L~a~~~sala~V~~ekllk 232 (406)
++.|+++++++++++|||+++++|.++++.++|+++....+ . +....|.++++++++++++..++.||..+
T Consensus 99 ~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~---~------~~~~~G~~~~l~a~~~~a~~~v~~k~~~~ 169 (302)
T TIGR00817 99 AMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTE---L------SFNWAGFLSAMISNITFVSRNIFSKKAMT 169 (302)
T ss_pred hcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCc---c------cccHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999998753211 1 12346889999999999999999999877
Q ss_pred hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--ccccc---CCh-HHHHHHHHHHHHHH-----HHHHHHHHHh
Q 015473 233 SQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDN--LDILQ---GHS-KATMLLIFNNAAQG-----ILSCFFLKYA 301 (406)
Q Consensus 233 ~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~--~~~~~---g~~-~~~~l~i~~~aigg-----~~v~~~~ky~ 301 (406)
++ +.++...+.+....+.++.+|.... .+++.. .+... ..+ ...+..++..+++. ......+|+.
T Consensus 170 ~~-~~~~~~~~~~~~~~~~~~l~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 245 (302)
T TIGR00817 170 IK-SLDKTNLYAYISIMSLFLLSPPAFI---TEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRV 245 (302)
T ss_pred cC-CCCcccHHHHHHHHHHHHHHHHHHH---HcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 31 2344444555555666555554332 232210 00000 011 11222222222211 1222467888
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015473 302 DAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS 350 (406)
Q Consensus 302 ~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~ 350 (406)
++...+....+.+++++++|++++||++|..+++|+++++.|+++|++.
T Consensus 246 sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~ 294 (302)
T TIGR00817 246 SPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRV 294 (302)
T ss_pred CchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999999999999999999999999999999874
No 10
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.87 E-value=5.8e-19 Score=176.68 Aligned_cols=289 Identities=12% Similarity=0.163 Sum_probs=193.4
Q ss_pred cccchhhHHHHHHHHHHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcch-hH
Q 015473 32 TRVSSKQRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLS-IS 110 (406)
Q Consensus 32 ~~~~~k~~~l~~ll~~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~-~~ 110 (406)
.+...|-..++..+...+... ....|..-++ ++| |.++..+|-++..+++..+. ..+.+. +|... .+
T Consensus 44 ~~~~~~~~~~~~~wy~~s~~~----~~~nK~vl~~--~~~-P~~l~~~~~~~~~l~~~~~~-~~~~~~----~~~~~~~~ 111 (350)
T PTZ00343 44 PNFKWKLALLFLTWYALNVLY----VVDNKLALNM--LPL-PWTISSLQLFVGWLFALLYW-ATGFRK----IPRIKSLK 111 (350)
T ss_pred CcccHHHHHHHHHHHHHHHHH----HHHHHHHHHh--CCh-hHHHHHHHHHHHHHHHHHHH-HhCCCC----CCCCCCHH
Confidence 334444444544454544432 2234433222 222 77888899888877665442 211111 12111 11
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 015473 111 TFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQ 190 (406)
Q Consensus 111 ~~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~ 190 (406)
++.......++++...+...+.++++.+++.+++++.+.|+++++++++++|||+++++|+++++.++|+.+..
T Consensus 112 ------~~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 112 ------LFLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 12235677778888777888899999999999999999999999999999999999999999999999999975
Q ss_pred cCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--cchHHHHHHH--HHHHHHHHHHHHHHHHHhcC
Q 015473 191 LRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYD--TSIYLQNLFL--YGYGAIFNFLGILVTAIFKG 266 (406)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~--~s~~~~~~~l--~~~g~l~~l~~~~~~~~~~~ 266 (406)
..+ .+.+..|+++++++++++++.+++.||++++... .+....+.+. ...|.++.+|.... .|+
T Consensus 186 ~~~---------~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~---~e~ 253 (350)
T PTZ00343 186 VKE---------LHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLF---FEG 253 (350)
T ss_pred ccc---------chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHH---Hhh
Confidence 321 1224569999999999999999999998875310 0111223333 45666666665432 232
Q ss_pred CCccc-------cccCChH-HHHHHHHHHHHHHHHHH----HHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHH
Q 015473 267 PDNLD-------ILQGHSK-ATMLLIFNNAAQGILSC----FFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFL 334 (406)
Q Consensus 267 ~~~~~-------~~~g~~~-~~~l~i~~~aigg~~v~----~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~ 334 (406)
+.... .+..+.+ ..+..++..++.+.+.. ..+++.++...+.+.++.+++++++|+++|||++|..++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~ 333 (350)
T PTZ00343 254 KKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGY 333 (350)
T ss_pred HHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhH
Confidence 11000 0111111 11222333344444434 467888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccc
Q 015473 335 LGISIVFISMHQFFSS 350 (406)
Q Consensus 335 lG~~LVi~gv~ly~~~ 350 (406)
+|.++++.|+++|+..
T Consensus 334 iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 334 LGMAVAILGALLYSLF 349 (350)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999999874
No 11
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.86 E-value=2e-18 Score=169.08 Aligned_cols=274 Identities=18% Similarity=0.156 Sum_probs=182.5
Q ss_pred HHHHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHHHH
Q 015473 45 LVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAV 124 (406)
Q Consensus 45 l~~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~v 124 (406)
+.+..++.+++..+.+|..-+ + .+|...+++|-.+..++.+.++. .+ + ++ . + ....
T Consensus 8 ~~l~~~~~Wg~~~~~~k~~~~--~--~~p~~~~~~R~~~a~~~l~~~~~--~~--~---~~-~---------~---~~~~ 63 (299)
T PRK11453 8 LALLVVVVWGLNFVVIKVGLH--N--MPPLMLAGLRFMLVAFPAIFFVA--RP--K---VP-L---------N---LLLG 63 (299)
T ss_pred HHHHHHHHHhhhHHHHHHHHh--c--CCHHHHHHHHHHHHHHHHHHHhc--CC--C---Cc-h---------H---HHHH
Confidence 455667789999888887633 2 67999999999876544333221 11 0 11 0 1 1112
Q ss_pred HHH-HHHHHHHHHHHHHhc-cChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCCC
Q 015473 125 PAF-LYAINNYLKFIMQLY-FNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMG 202 (406)
Q Consensus 125 pAl-ly~~~n~L~f~al~~-l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~~~ 202 (406)
-++ .+..+..+.|.++++ .|++...++.++.|+++++++++++|||++++||+++++.++|+.++..++.+ +
T Consensus 64 ~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~-~----- 137 (299)
T PRK11453 64 YGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLN-G----- 137 (299)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCC-C-----
Confidence 233 234566678889988 78899999999999999999999999999999999999999999887533211 1
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-ccccCChHHHH
Q 015473 203 LPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNL-DILQGHSKATM 281 (406)
Q Consensus 203 ~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~-~~~~g~~~~~~ 281 (406)
.+.+..|.+++++++++++++.++.||..++..+......+.+....+.+ +........+++... ..+..++...|
T Consensus 138 ~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (299)
T PRK11453 138 QHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPII---PFFVASLILDGSATMIHSLVTIDMTTI 214 (299)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHH---HHHHHHHHhcCchhhhhhhccCCHHHH
Confidence 11223588999999999999999999976543111111112222222211 111111122332110 11223444556
Q ss_pred HHHHHHHHHHHHHHH-----HHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcccc
Q 015473 282 LLIFNNAAQGILSCF-----FLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSL 351 (406)
Q Consensus 282 l~i~~~aigg~~v~~-----~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~~ 351 (406)
..+++.++.+..+++ .+++.++.......++.|+++.++|++++||+++..+++|+++|+.|+++-..+.
T Consensus 215 ~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 215 LSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence 666666655554444 3466677777788889999999999999999999999999999999999876543
No 12
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.84 E-value=1.4e-18 Score=162.72 Aligned_cols=305 Identities=14% Similarity=0.165 Sum_probs=205.0
Q ss_pred hHHHHHHHHHHHHHHHhhHhHhhhhcc---cCCc----ccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC-CCcchh
Q 015473 38 QRVLNVFLVVGDCMLVGLQPILVYMSK---VDGR----FKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGE-KPLLSI 109 (406)
Q Consensus 38 ~~~l~~ll~~~~~~~~~~~~~l~k~s~---~~g~----~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~-~~~l~~ 109 (406)
++.++-++|+.+... ..++.|++. .+|. -++-.+...|+.|+..+.+-..+-.+..++...++ ...++.
T Consensus 3 ~~v~ls~imvvsGs~---Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq 79 (372)
T KOG3912|consen 3 HRVFLSLIMVVSGSF---NTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQ 79 (372)
T ss_pred hhhhhhhhhhhhccH---HHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccccccc
Confidence 444444455444432 345677765 2222 13444567899998877655444333222111110 001110
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhh
Q 015473 110 STFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVN 189 (406)
Q Consensus 110 ~~~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv 189 (406)
. ..+-++..+..||+++.....+.|+++.+++++.+|+++...++||++|+..+|||+++.+||+++....+|++++
T Consensus 80 ~---~~pf~p~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviV 156 (372)
T KOG3912|consen 80 D---SSPFNPVLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIV 156 (372)
T ss_pred c---cCCCCcceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhhee
Confidence 0 0023456788899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCC-CCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHH-HHHHHHHHHHHHHhcCC
Q 015473 190 QLRSLPEGS-TAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYG-AIFNFLGILVTAIFKGP 267 (406)
Q Consensus 190 ~~~~~~~~~-~~~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g-~l~~l~~~~~~~~~~~~ 267 (406)
...+....+ +.........|.++.+++.++-|...++.||.+|++ +..+..-.-+-.++| .+++++.+....+..++
T Consensus 157 g~~d~~~~~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~-nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~ 235 (372)
T KOG3912|consen 157 GSLDVHLVTDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKS-NVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGD 235 (372)
T ss_pred eeeecccccCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhc-cCCHHHHhhhhhhHHHHHHHHHHHHHhheecCC
Confidence 654321111 111112235688999999999999999999999986 566655555667788 44444444433332332
Q ss_pred C----ccccccCChHHHHHH-----HHHHHHHHHHHH---------HHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCc
Q 015473 268 D----NLDILQGHSKATMLL-----IFNNAAQGILSC---------FFLKYADAILKKYSSTVATIFTGIASAVLFGHTL 329 (406)
Q Consensus 268 ~----~~~~~~g~~~~~~l~-----i~~~aigg~~v~---------~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~ 329 (406)
+ +.+.++.+. ..|.. .+..+++|.+++ .+.|+.++..+......+.++..+++..+++|.+
T Consensus 236 sfS~~~~g~~eD~~-~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f 314 (372)
T KOG3912|consen 236 SFSCNPRGVLEDWG-DAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYF 314 (372)
T ss_pred cCcCCCCcchhhHH-HHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHH
Confidence 1 123233322 11111 123344444444 4568888888888888999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccc
Q 015473 330 TMNFLLGISIVFISMHQFFSS 350 (406)
Q Consensus 330 t~~~~lG~~LVi~gv~ly~~~ 350 (406)
...++.|.++.+.|+++|+.-
T Consensus 315 ~llqilGFliLi~Gi~lY~~i 335 (372)
T KOG3912|consen 315 HLLQILGFLILIMGIILYNQI 335 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999863
No 13
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.84 E-value=1.2e-17 Score=163.10 Aligned_cols=269 Identities=13% Similarity=0.124 Sum_probs=188.4
Q ss_pred HHHHHHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHH
Q 015473 43 VFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLL 122 (406)
Q Consensus 43 ~ll~~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~ 122 (406)
+++.+...+.+++..+.+|...++ .+|.+.+++|-++..++-+++...++++ ++ +. ++....
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~~----~~p~~~~~~R~~~a~l~ll~~~~~~~~~-----~~--~~-------~~~~~~ 71 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVES----WPPLMMAGVRFLIAGILLLAFLLLRGHP-----LP--TL-------RQWLNA 71 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHHHHhCCC-----CC--cH-------HHHHHH
Confidence 555666677799988899876442 6799999999999877766655443321 11 11 122234
Q ss_pred HHHHHH-HHHHHHHHHHHH-hccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 015473 123 AVPAFL-YAINNYLKFIMQ-LYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTA 200 (406)
Q Consensus 123 ~vpAll-y~~~n~L~f~al-~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~ 200 (406)
.+.+.+ ...++.+.+.+. ++++++...++.++.|+++++++++ +|||++++||.++++.++|+.++..++. .
T Consensus 72 ~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~--~--- 145 (292)
T PRK11272 72 ALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGN--L--- 145 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcc--c---
Confidence 445544 457788899999 9999999999999999999999986 7999999999999999999988743221 1
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHH
Q 015473 201 MGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKAT 280 (406)
Q Consensus 201 ~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~ 280 (406)
+....|.++.+++++++|+++++.||..++ .+......++ ..+.+...+... ..+.. .....+...
T Consensus 146 ---~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~----~~~~~---~~~~~~~~~ 211 (292)
T PRK11272 146 ---SGNPWGAILILIASASWAFGSVWSSRLPLP---VGMMAGAAEM-LAAGVVLLIASL----LSGER---LTALPTLSG 211 (292)
T ss_pred ---ccchHHHHHHHHHHHHHHHHHHHHHhcCCC---cchHHHHHHH-HHHHHHHHHHHH----HcCCc---ccccCCHHH
Confidence 112358899999999999999999886433 2333333333 333333222211 12211 011123344
Q ss_pred HHHHHHHHHHH-----HHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015473 281 MLLIFNNAAQG-----ILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS 349 (406)
Q Consensus 281 ~l~i~~~aigg-----~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~ 349 (406)
|..+++.++.+ .+....+|+.++...+...+..++++.+++++++||++|..+++|+++++.|+++.+.
T Consensus 212 ~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 212 FLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 54444444443 4445566788888888888999999999999999999999999999999999988765
No 14
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.81 E-value=3.1e-17 Score=156.49 Aligned_cols=250 Identities=13% Similarity=0.108 Sum_probs=173.7
Q ss_pred HhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHHHHHH-HHHHHHHH
Q 015473 56 QPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPA-FLYAINNY 134 (406)
Q Consensus 56 ~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~vpA-lly~~~n~ 134 (406)
..+..|..-++ . .++..+.+.|-+...++..+...++ . + . ++...+.+.+ +...+++.
T Consensus 4 ~~~~~k~~~~~-~--~~~~~~~~~r~~~~~l~l~~~~~~~-~-------~---~-------~~~~~~~~~~~~~~~l~~~ 62 (260)
T TIGR00950 4 TGVVIGQYLEG-Q--VPLYFAVFRRLIFALLLLLPLLRRR-P-------P---L-------KRLLRLLLLGALQIGVFYV 62 (260)
T ss_pred hHHHHHHHHhc-C--CCHHHHHHHHHHHHHHHHHHHHHhc-c-------C---H-------hHHHHHHHHHHHHHHHHHH
Confidence 34455654222 2 4577777777777666554443322 1 0 0 1112344554 55679999
Q ss_pred HHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCccchHHHHHHH
Q 015473 135 LKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTL 214 (406)
Q Consensus 135 L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~~~~~~~~~G~ll~L 214 (406)
+.|.|++++|+++..++.++.|+++++++.+++|||++++||.++++.++|+.++..++. . +....|+++.+
T Consensus 63 ~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~--~------~~~~~G~~~~l 134 (260)
T TIGR00950 63 LYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGN--L------SINPAGLLLGL 134 (260)
T ss_pred HHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCc--c------cccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988753321 1 12245889999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHHH-----HHHHH
Q 015473 215 IFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLI-----FNNAA 289 (406)
Q Consensus 215 ~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~l~i-----~~~ai 289 (406)
+++++++...++.|+..++. +.+....+.+....+.++..+... ..++.. ..+...|..+ +...+
T Consensus 135 ~a~~~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 204 (260)
T TIGR00950 135 GSGISFALGTVLYKRLVKKE-GPELLQFTGWVLLLGALLLLPFAW----FLGPNP-----QALSLQWGALLYLGLIGTAL 204 (260)
T ss_pred HHHHHHHHHHHHHhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHH----hcCCCC-----CcchHHHHHHHHHHHHHHHH
Confidence 99999999999999987653 222222332334444444333322 222211 1122233222 23344
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHH
Q 015473 290 QGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISM 344 (406)
Q Consensus 290 gg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv 344 (406)
+..+....+|+.+........++.++++.+++++++||+++..+++|..+++.|+
T Consensus 205 ~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 205 AYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 5556667788889888899999999999999999999999999999999999885
No 15
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.81 E-value=3e-19 Score=163.43 Aligned_cols=255 Identities=12% Similarity=0.128 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhcccCCCCCcchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHh
Q 015473 74 ISVNFLTEMTKVLFAIVMLF-FQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLS 152 (406)
Q Consensus 74 ~~vv~~~E~~kl~i~~~ll~-~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~ 152 (406)
-+.||+++...-+++=+++. +...+.. + -+.+.++.-++-|.+...-...|++++|.+|..+-+
T Consensus 54 laLVf~qC~~N~vfAkvl~~ir~~~~~D---~------------t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgK 118 (337)
T KOG1580|consen 54 LALVFFQCTANTVFAKVLFLIRKKTEID---N------------TPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGK 118 (337)
T ss_pred HHHHHHHHHHHHHHHHhheeeccccccc---C------------CcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcc
Confidence 35789998888888744433 3222111 1 123468888999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015473 153 NLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALK 232 (406)
Q Consensus 153 ~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~~~~~~~~~G~ll~L~a~~~sala~V~~ekllk 232 (406)
++||+.++++.+++.+++++|+++.++++..+||++.-+++...+... ......|-++.+++..+.|+.+..+|++.+
T Consensus 119 ScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e--~~t~g~GElLL~lSL~mDGlTg~~Qdrira 196 (337)
T KOG1580|consen 119 SCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAE--DKTFGFGELLLILSLAMDGLTGSIQDRIRA 196 (337)
T ss_pred cCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCc--ccccchHHHHHHHHHHhcccchhHHHHHHH
Confidence 999999999999999999999999999999999999977753221110 011124778888899999999999999877
Q ss_pred hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc--ccccCChHHHHH---HHHHHHHHHHHHHHHHHHhhhHHHH
Q 015473 233 SQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNL--DILQGHSKATML---LIFNNAAQGILSCFFLKYADAILKK 307 (406)
Q Consensus 233 ~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~--~~~~g~~~~~~l---~i~~~aigg~~v~~~~ky~~~i~k~ 307 (406)
.+. ++-...+.++++|+++....+++ +.|+.++ -|.+-++...|- ..+...+|+.++...+.+.++...+
T Consensus 197 ~yq-~~g~~MM~~~NlwStL~Lg~g~l----fTGElweF~yF~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCS 271 (337)
T KOG1580|consen 197 SYQ-RTGTSMMFYTNLWSTLYLGAGLL----FTGELWEFFYFVQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCS 271 (337)
T ss_pred hhc-cCchhhHHHHHHHHHHHhhhhhe----ehhhHHHHHHHHHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEE
Confidence 652 23333566777888887655554 3444211 122334433332 2356778999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015473 308 YSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS 350 (406)
Q Consensus 308 ~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~ 350 (406)
..++++..|+++.|+++|+++++..+|+|..+|+.+...=...
T Consensus 272 ivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~ 314 (337)
T KOG1580|consen 272 IVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVD 314 (337)
T ss_pred EEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhc
Confidence 9999999999999999999999999999999999988754443
No 16
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.81 E-value=4.2e-17 Score=159.47 Aligned_cols=270 Identities=11% Similarity=0.055 Sum_probs=179.9
Q ss_pred HHHHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHHHH
Q 015473 45 LVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAV 124 (406)
Q Consensus 45 l~~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~v 124 (406)
+++..++.++.+-+..|..-++ ++|....++|-.+..++...+. .+ |..+. ..+. ....
T Consensus 8 ~~l~a~~~Wg~~~~~~k~~~~~----~~P~~~~~~R~~~a~l~l~~~~---~~-------~~~~~-----~~~~--~~~~ 66 (295)
T PRK11689 8 IGLIAILLWSTMVGLIRGVSES----LGPVGGAAMIYSVSGLLLLLTV---GF-------PRLRQ-----FPKR--YLLA 66 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc----CChHHHHHHHHHHHHHHHHHHc---cc-------ccccc-----ccHH--HHHH
Confidence 4556677788887888876333 6798999999877765544332 11 00000 0011 2223
Q ss_pred HHHHHHHHHHHHHHHHhc----cChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCC-CC
Q 015473 125 PAFLYAINNYLKFIMQLY----FNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEG-ST 199 (406)
Q Consensus 125 pAlly~~~n~L~f~al~~----l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~-~~ 199 (406)
-++.+++++.+.|.++++ +++.+..++.++.|+++++++++++|||++++||.++++.++|+.++..++.+.+ .+
T Consensus 67 ~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~ 146 (295)
T PRK11689 67 GGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAE 146 (295)
T ss_pred HhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhh
Confidence 345567788888887754 6888889999999999999999999999999999999999999988754321100 00
Q ss_pred -CCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChH
Q 015473 200 -AMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSK 278 (406)
Q Consensus 200 -~~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~ 278 (406)
..+......|.++++.+++++|++.++.||..++. ++.. ......+..+ .+.. ..+++. ....++
T Consensus 147 ~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~---~~~~--~~~~~~~~~l-~~~~----~~~~~~----~~~~~~ 212 (295)
T PRK11689 147 LINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK---NGIT--LFFILTALAL-WIKY----FLSPQP----AMVFSL 212 (295)
T ss_pred hhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCC---Cchh--HHHHHHHHHH-HHHH----HHhcCc----cccCCH
Confidence 00111123588999999999999999999975543 2221 1111222221 1111 122221 112333
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015473 279 ATMLLIFNNA----AQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS 349 (406)
Q Consensus 279 ~~~l~i~~~a----igg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~ 349 (406)
..|..+++.+ ++..+-...+|+.++...+...++.|+++++++++++||+++..+++|+++|+.|+++...
T Consensus 213 ~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 213 PAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 3343333322 3344555777888999889999999999999999999999999999999999999987654
No 17
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.80 E-value=1.3e-16 Score=155.78 Aligned_cols=263 Identities=12% Similarity=0.000 Sum_probs=181.3
Q ss_pred HHHHHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHHH
Q 015473 44 FLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLA 123 (406)
Q Consensus 44 ll~~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~ 123 (406)
.+++..+++++..+.+.|+.-++ ++|.+.++.|.++..++...+..+.+. + .+. ++.....
T Consensus 15 ~~~~la~~~~~~~~~~~K~~~~~----~~~~~~~~~R~~~a~l~l~~~~~~~~~------~--~~~-------~~~~~~~ 75 (293)
T PRK10532 15 LLLLIAMASIQSGASLAKSLFPL----VGAPGVTALRLALGTLILIAIFKPWRL------R--FAK-------EQRLPLL 75 (293)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH----cCHHHHHHHHHHHHHHHHHHHHhHHhc------c--CCH-------HHHHHHH
Confidence 56666777788899899876432 678899999999987666554422211 0 111 2222455
Q ss_pred HHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCC
Q 015473 124 VPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGL 203 (406)
Q Consensus 124 vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~~~~ 203 (406)
..++++...+.+.|++++++|++...++..+.|+++++++. ||.++.+| +.+.++|+.++..++.+ .+
T Consensus 76 ~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~~~~--~~i~~~Gv~li~~~~~~-~~----- 143 (293)
T PRK10532 76 FYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVDFVW--VVLAVLGLWFLLPLGQD-VS----- 143 (293)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHHHHH--HHHHHHHHheeeecCCC-cc-----
Confidence 66677888899999999999999999999999999998873 55555554 56678999876432211 11
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHH-
Q 015473 204 PVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATML- 282 (406)
Q Consensus 204 ~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~l- 282 (406)
..+..|.++.+++++++++..++.||..++. ++.....+ .+.+.++..+... .+++. ..+++..|.
T Consensus 144 ~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~---~~~~~~~~-~~~~~~~l~~~~~----~~~~~-----~~~~~~~~~~ 210 (293)
T PRK10532 144 HVDLTGAALALGAGACWAIYILSGQRAGAEH---GPATVAIG-SLIAALIFVPIGA----LQAGE-----ALWHWSILPL 210 (293)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHhccC---CchHHHHH-HHHHHHHHHHHHH----HccCc-----ccCCHHHHHH
Confidence 1123588999999999999999999986553 33333333 3444443333222 22211 012222332
Q ss_pred ----HHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015473 283 ----LIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS 350 (406)
Q Consensus 283 ----~i~~~aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~ 350 (406)
.++...++..+....+++.++...+...++.++++.++|++++||+++..+++|+++|+.|+..+...
T Consensus 211 ~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 211 GLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 23333344455567778889999999999999999999999999999999999999999999888654
No 18
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.77 E-value=1.4e-16 Score=154.67 Aligned_cols=273 Identities=12% Similarity=0.085 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHhhHhHhhh-hcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhH-
Q 015473 43 VFLVVGDCMLVGLQPILVY-MSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNV- 120 (406)
Q Consensus 43 ~ll~~~~~~~~~~~~~l~k-~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~- 120 (406)
+++.+...++++..+++.| .+++ + ++.+ +.....-.++..++...+..+. +.+..+ ++.+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~--~---~~~~--~~~~~~~~~~l~~~~~~~~~~~---~~~~~~--------~~~~~ 64 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK--E---PDFL--WWALLAHSVLLTPYGLWYLAQV---GWSRLP--------ATFWL 64 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc--h---hHHH--HHHHHHHHHHHHHHHHHhcccC---CCCCcc--------hhhHH
Confidence 4577788888999999988 4432 1 1222 3333333333333322221111 111111 1112
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 015473 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTA 200 (406)
Q Consensus 121 ~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~ 200 (406)
....-++....++.+.+.++++.|++....+.++.|+++++++++++|||++++||+++.+.++|+.++..++. +.
T Consensus 65 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~-~~--- 140 (281)
T TIGR03340 65 LLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRF-AQ--- 140 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccc-cc---
Confidence 34445567889999999999999999999999999999999999999999999999999999999988754321 11
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCccccccCChHH
Q 015473 201 MGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFN-FLGILVTAIFKGPDNLDILQGHSKA 279 (406)
Q Consensus 201 ~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~-l~~~~~~~~~~~~~~~~~~~g~~~~ 279 (406)
....|..++++++++++++.++.|+..++. ++.....+...++.++. .+..... ...++.... .....++
T Consensus 141 ----~~~~g~~~~l~aal~~a~~~i~~k~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~ 211 (281)
T TIGR03340 141 ----HRRKAYAWALAAALGTAIYSLSDKAAALGV---PAFYSALGYLGIGFLAMGWPFLLLY-LKRHGRSMF-PYARQIL 211 (281)
T ss_pred ----cchhHHHHHHHHHHHHHHhhhhccccccch---hcccccHHHHHHHHHHHHHHHHHHH-HHHhccchh-hhHHHHH
Confidence 112366678888899999888777654332 11111111111222221 1211111 111111000 0011111
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHH
Q 015473 280 --TMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQ 346 (406)
Q Consensus 280 --~~l~i~~~aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~l 346 (406)
.+...+..+++..+....+++.+........+++++++.++|++++||+++..+++|+++|+.|+++
T Consensus 212 ~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 212 PSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 1112233334445555667777776666777789999999999999999999999999999999875
No 19
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.72 E-value=4.1e-14 Score=135.76 Aligned_cols=269 Identities=19% Similarity=0.204 Sum_probs=175.0
Q ss_pred HHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHHHHHHH
Q 015473 48 GDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAF 127 (406)
Q Consensus 48 ~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~vpAl 127 (406)
...+.++......|...++ ..++....+.+.+...++......++.. .. ++.. . +..+......+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~-~-------~~~~~~~~~~~ 78 (292)
T COG0697 14 LWGLLWGLSFIALKLAVES---LDPFLFAAALRFLIAALLLLPLLLLEPR-GL---RPAL-R-------PWLLLLLLALL 78 (292)
T ss_pred HHHHHHHHHHHHHHHHhcc---cCChHHHHHHHHHHHHHHHHHHHHhhcc-cc---cccc-c-------chHHHHHHHHH
Confidence 3345566666665544322 2345555566777777662222221110 00 1100 0 01124566667
Q ss_pred HHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCccc
Q 015473 128 LYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLK-IIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVA 206 (406)
Q Consensus 128 ly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~-l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~~~~~~~ 206 (406)
.....+.+.|.++++++++...++.++.|++++++++ +++|||+++++|.++++.++|+.++..++..+.. + .
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~-----~-~ 152 (292)
T COG0697 79 GLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGI-----L-S 152 (292)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchh-----H-H
Confidence 8889999999999999999999999999999999997 7779999999999999999999998655432111 0 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHHH--
Q 015473 207 MGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLI-- 284 (406)
Q Consensus 207 ~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~l~i-- 284 (406)
..|.++.++++++.+++.++.|+.. +. .+.. ........+... .......... + ...+...|...
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~--~~~~-~~~~~~~~~~~~----~~~~~~~~~~---~--~~~~~~~~~~~~~ 219 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS-RL--GPVT-LALLLQLLLALL----LLLLFFLSGF---G--APILSRAWLLLLY 219 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CC--ChHH-HHHHHHHHHHHH----HHHHHHhccc---c--ccCCHHHHHHHHH
Confidence 4688999999999999999999887 31 1211 111011111111 1110011111 0 11122222222
Q ss_pred ---HHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015473 285 ---FNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS 350 (406)
Q Consensus 285 ---~~~aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~ 350 (406)
+..+++..+....++..+...........++++.+++++++||.++..+++|.++++.|+.+.+..
T Consensus 220 ~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 220 LGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 223345555666777788777777778999999999999999999999999999999999988764
No 20
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.70 E-value=1.8e-14 Score=137.82 Aligned_cols=247 Identities=11% Similarity=0.025 Sum_probs=161.4
Q ss_pred HHHHHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHH--HhhhhhHH
Q 015473 44 FLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFI--QAARNNVL 121 (406)
Q Consensus 44 ll~~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~--~~~r~~~~ 121 (406)
++++..++.++.+++..|... + .+|.++++.|.++..++-..++...++++.. + +++. +..+....
T Consensus 5 ~~~i~a~~~wg~~~~~~k~~~-~----~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~ 72 (256)
T TIGR00688 5 IVSLLASFLFGYMYYYSKLLK-P----LPATDILGHRMIWSFPFMLLSVTLFRQWAAL--I-----ERLKRIQKRPLILS 72 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-c----CCHHHHHHHHHHHHHHHHHHHHHHHcchHHH--H-----HHHhCcccchHHHH
Confidence 466777888999999998741 2 6799999999999876544443322211000 0 0000 00011234
Q ss_pred HHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCC
Q 015473 122 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAM 201 (406)
Q Consensus 122 ~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~~ 201 (406)
....+++..+++.++|++++++|++++.++.++.|+++++++++++|||++++||++++++++|++++..++ ++
T Consensus 73 ~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~---~~--- 146 (256)
T TIGR00688 73 LLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLK---GS--- 146 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHc---CC---
Confidence 677888899999999999999999999999999999999999999999999999999999999998874321 11
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHH
Q 015473 202 GLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATM 281 (406)
Q Consensus 202 ~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~ 281 (406)
. . +++++++++++++.++.|+..+++ .. +.....+...++..+... ..+............+.+
T Consensus 147 -~-----~-~~~l~aa~~~a~~~i~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 210 (256)
T TIGR00688 147 -L-----P-WEALVLAFSFTAYGLIRKALKNTD---LA--GFCLETLSLMPVAIYYLL----QTDFATVQQTNPFPIWLL 210 (256)
T ss_pred -c-----h-HHHHHHHHHHHHHHHHHhhcCCCC---cc--hHHHHHHHHHHHHHHHHH----HhccCcccccCchhHHHH
Confidence 1 1 346778888999998888864321 11 111111111222111111 111110000111112222
Q ss_pred HH--HHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHH
Q 015473 282 LL--IFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVL 324 (406)
Q Consensus 282 l~--i~~~aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~ll 324 (406)
+. .+..+++..+....+|+.++...+...++.|+++.++++++
T Consensus 211 l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 211 LVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 22 12345666778888899999999999999999999999764
No 21
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.61 E-value=1.6e-16 Score=148.14 Aligned_cols=218 Identities=13% Similarity=0.132 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCC-----C
Q 015473 122 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLP-----E 196 (406)
Q Consensus 122 ~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~-----~ 196 (406)
+.+++++.+....+.|+|++|++.+.+.++..+.|.+|.+|++.+|||++|...-++..+.+.||+++.-++.- +
T Consensus 100 LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~ 179 (346)
T KOG4510|consen 100 LILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTE 179 (346)
T ss_pred EEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcc
Confidence 44556666677789999999999999999999999999999999999999999999999999999998665531 1
Q ss_pred CCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccC
Q 015473 197 GSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKS-QYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQG 275 (406)
Q Consensus 197 ~~~~~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~-~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g 275 (406)
+.+..+..-...|....+.+++..+-..+..|++.|+ +...+.+ +....+.+.+++....-.-++-|. .+
T Consensus 180 g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h~~msvs----yf~~i~lV~s~I~~~~ig~~~lP~-----cg 250 (346)
T KOG4510|consen 180 GEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAHAIMSVS----YFSLITLVVSLIGCASIGAVQLPH-----CG 250 (346)
T ss_pred ccccccccccCCchHHHHHhHhhhhhHHHHHHHhhccccEEEEeh----HHHHHHHHHHHHHHhhccceecCc-----cc
Confidence 1111111111235566777777777777778998886 2223433 444555555554433110111110 12
Q ss_pred ChHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhc
Q 015473 276 HSKATMLLI-FNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFF 348 (406)
Q Consensus 276 ~~~~~~l~i-~~~aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~ 348 (406)
-+++....+ +..-+|+++++..++.-.+--.+..+++.++++.+..+++|||.||++.++|+++|+.+.....
T Consensus 251 kdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a 324 (346)
T KOG4510|consen 251 KDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVA 324 (346)
T ss_pred cceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHH
Confidence 222222112 3445677888877766544455688889999999999999999999999999999999876543
No 22
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.50 E-value=5.1e-11 Score=113.45 Aligned_cols=271 Identities=17% Similarity=0.261 Sum_probs=180.4
Q ss_pred HHHHHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHHH
Q 015473 44 FLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLA 123 (406)
Q Consensus 44 ll~~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~ 123 (406)
++.+.+++.+|..+...|+.+. .++.++.--|-+-...+.+..+...++.+ ..+...+.+|....+.
T Consensus 10 l~~l~Ay~lwG~lp~y~kll~~-----~~~~eIlahRviwS~~~~l~ll~~~r~~~--------~~~~~~~~p~~~~~~~ 76 (293)
T COG2962 10 LLALLAYLLWGLLPLYFKLLEP-----LPATEILAHRVIWSFPFMLALLFLLRQWR--------ELKQLLKQPKTLLMLA 76 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHHHHHHHHHHHHhhhH--------HHHHHHhCcHHHHHHH
Confidence 3556677788888888887733 55777777777777777766655443311 0122333445555677
Q ss_pred HHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCC
Q 015473 124 VPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGL 203 (406)
Q Consensus 124 vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~~~~ 203 (406)
+-+++-..|-.++.+|..+=..-+.++-+...|++..++..++||||+|+.||+|+.+..+||....... + +.
T Consensus 77 l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~---g----~l 149 (293)
T COG2962 77 LTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL---G----SL 149 (293)
T ss_pred HHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc---C----CC
Confidence 7778888888888899999999999999999999999999999999999999999999999998865432 1 12
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc-CChHHHHH
Q 015473 204 PVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQ-GHSKATML 282 (406)
Q Consensus 204 ~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~-g~~~~~~l 282 (406)
| +.. +.-++..++++. .||.+|-+...+....++++... .+..+.. .+.... +.. +.+...++
T Consensus 150 p--wva----l~la~sf~~Ygl-~RK~~~v~a~~g~~lE~l~l~p~----al~yl~~---l~~~~~--~~~~~~~~~~~L 213 (293)
T COG2962 150 P--WVA----LALALSFGLYGL-LRKKLKVDALTGLTLETLLLLPV----ALIYLLF---LADSGQ--FLQQNANSLWLL 213 (293)
T ss_pred c--HHH----HHHHHHHHHHHH-HHHhcCCchHHhHHHHHHHHhHH----HHHHHHH---HhcCch--hhhcCCchHHHH
Confidence 2 222 222345677664 56666653223333444443222 2222221 222211 122 22212222
Q ss_pred HHHHHHHHH---HHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015473 283 LIFNNAAQG---ILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS 350 (406)
Q Consensus 283 ~i~~~aigg---~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~ 350 (406)
.+....+.+ ++.+..-|..+=.+-++.++.++.+--+++++++||+++..+.+..+.+-.|..+|...
T Consensus 214 Lv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d 284 (293)
T COG2962 214 LVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSID 284 (293)
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 332222222 23333346666677789999999999999999999999999999999999999998864
No 23
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.49 E-value=3.4e-14 Score=133.28 Aligned_cols=230 Identities=15% Similarity=0.186 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 015473 121 LLAVPAFLYAINNYLKFIMQLY-FNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGST 199 (406)
Q Consensus 121 ~~~vpAlly~~~n~L~f~al~~-l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~ 199 (406)
.|++.-.++.+.|.+..+++.+ +|.+...+.++-.++.+++++++++|||+|.+|+.+++++++|+++..+.+..++..
T Consensus 66 ~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~ 145 (330)
T KOG1583|consen 66 DYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS 145 (330)
T ss_pred hhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence 4777777888899999999998 899999999999999999999999999999999999999999999876544322111
Q ss_pred -------C---CCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHH--------
Q 015473 200 -------A---MGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVT-------- 261 (406)
Q Consensus 200 -------~---~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~-------- 261 (406)
. ........|+.+...+.+.+|..++|+|..+|++.++ |..+++ +.-.+++|..+..
T Consensus 146 ~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh--~~EalF---ytH~LsLP~Flf~~~div~~~ 220 (330)
T KOG1583|consen 146 KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKH--WKEALF---YTHFLSLPLFLFMGDDIVSHW 220 (330)
T ss_pred hhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--hHHHHH---HHHHhccchHHHhcchHHHHH
Confidence 0 0111123577777788999999999999999987433 333433 3445555554421
Q ss_pred -HHhcCCC-ccccccCChHHHHHHHHHHHHHH-HHHHHHHHH---hhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHH
Q 015473 262 -AIFKGPD-NLDILQGHSKATMLLIFNNAAQG-ILSCFFLKY---ADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLL 335 (406)
Q Consensus 262 -~~~~~~~-~~~~~~g~~~~~~l~i~~~aigg-~~v~~~~ky---~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~l 335 (406)
..+.++. ..+.+...-+..|..++.+.+.+ .++..++-. .++.+.....+++..++.++|+++|.++++++.|+
T Consensus 221 ~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~l 300 (330)
T KOG1583|consen 221 RLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWL 300 (330)
T ss_pred HHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHH
Confidence 0112221 00111111123454444444444 333333321 23333444455778899999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccc
Q 015473 336 GISIVFISMHQFFSSLSKAK 355 (406)
Q Consensus 336 G~~LVi~gv~ly~~~~~~~k 355 (406)
|+++|+.|..+|...-+++|
T Consensus 301 Ga~lVF~Gt~~fa~~~~~~~ 320 (330)
T KOG1583|consen 301 GAALVFFGTLLFANVWNHPK 320 (330)
T ss_pred HHHHHHHHHHHHHHHHcCcc
Confidence 99999999999987666655
No 24
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.48 E-value=1.4e-12 Score=122.09 Aligned_cols=281 Identities=16% Similarity=0.153 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHhhHhHhhhhcccCCcccchHH--HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhH
Q 015473 43 VFLVVGDCMLVGLQPILVYMSKVDGRFKFSPI--SVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNV 120 (406)
Q Consensus 43 ~ll~~~~~~~~~~~~~l~k~s~~~g~~~~~~~--~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~ 120 (406)
++|..+..+.|...+.+.++-.+..+ +.|. ...+.+-++=..+.++ +.+-... .+...+. |
T Consensus 45 lic~~g~Ff~Yl~yGy~qElif~~~g--fkp~GWylTlvQf~~Ysg~gli----e~~~~~~-k~r~iP~-------r--- 107 (367)
T KOG1582|consen 45 LICSAGVFFLYLVYGYLQELIFNVEG--FKPFGWYLTLVQFLVYSGFGLI----ELQLIQT-KRRVIPW-------R--- 107 (367)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhcccc--CcccchHHHHHHHHHHHhhhhe----EEEeecc-cceecch-------h---
Confidence 56778888888888888876553222 2222 1223332222111111 1110000 0111111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 015473 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTA 200 (406)
Q Consensus 121 ~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~ 200 (406)
.+.+.|.+-.....|..-++.|++.++..+.+++|.+.+++.+.++=|+|+.+..+.|..++.+|.+...+.+....+
T Consensus 108 tY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sP-- 185 (367)
T KOG1582|consen 108 TYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSP-- 185 (367)
T ss_pred HhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCC--
Confidence 478888888899999999999999999999999999999999999999999999999999999999999876642211
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--ccccccCChH
Q 015473 201 MGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPD--NLDILQGHSK 278 (406)
Q Consensus 201 ~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~--~~~~~~g~~~ 278 (406)
..+..|++++-.+-+++|+-+=.+||.+|.++..+ ....++-+..|.++.+..+. ..|+- .+.++..+++
T Consensus 186 ---NF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss-~EmvfySy~iG~vflf~~mv----lTge~f~a~~fcaehp~ 257 (367)
T KOG1582|consen 186 ---NFNLIGVMMISGALLADAVIGNVQEKAMKMNPASS-SEMVFYSYGIGFVFLFAPMV----LTGELFSAWTFCAEHPV 257 (367)
T ss_pred ---CcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCc-ceEEEeeecccHHHHHHHHH----hcccchhhhHHHHhCcH
Confidence 23446877777777888988888999999753333 22222334444444443333 34442 2344555555
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015473 279 ATMLLIFNNA----AQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS 350 (406)
Q Consensus 279 ~~~l~i~~~a----igg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~ 350 (406)
.++...+.-+ +|...+-..+|..++.+....++.+.-.++++|+++|..++|.+..-|..+|+.|+++-..+
T Consensus 258 ~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ys 333 (367)
T KOG1582|consen 258 RTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYS 333 (367)
T ss_pred hHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhccc
Confidence 4554433322 23334445568788888888888999999999999999999999999999999999986654
No 25
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.46 E-value=5e-13 Score=130.67 Aligned_cols=223 Identities=13% Similarity=0.203 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 015473 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTA 200 (406)
Q Consensus 121 ~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~ 200 (406)
.....++.+++...+...++++.|.+.+|+++.+.|+++.++++++.+|++++.-|++++....||.+....+
T Consensus 85 ~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e------- 157 (316)
T KOG1441|consen 85 TLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTE------- 157 (316)
T ss_pred HHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeecc-------
Confidence 5777889999999999999999999999999999999999999999999999999999999999998875522
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcchHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCccc-cccCCh
Q 015473 201 MGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQ-YDTSIYLQNLFLYGYGAIFNF-LGILVTAIFKGPDNLD-ILQGHS 277 (406)
Q Consensus 201 ~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~-~~~s~~~~~~~l~~~g~l~~l-~~~~~~~~~~~~~~~~-~~~g~~ 277 (406)
...+..|.+..+.+.+..++..++.+++++++ .+.+...-..++...+.++.+ |... ..+++...+ ....++
T Consensus 158 --~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~---~~~~~~~~~~~~~~~~ 232 (316)
T KOG1441|consen 158 --LSFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLD---YVEGNKFVGFLTAPWF 232 (316)
T ss_pred --ccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHh---hhcccceeeeeccccc
Confidence 12456798999999999999999999999642 122222111222233333333 2211 123332100 112333
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccccccc
Q 015473 278 KATMLLIFNNA---AQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKA 354 (406)
Q Consensus 278 ~~~~l~i~~~a---igg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~~~~~ 354 (406)
...+..++++. ..++....++.+.++++-..+..+..++.++.|+++|+++.|+...+|+++.+.|+++|++...++
T Consensus 233 ~~~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~ 312 (316)
T KOG1441|consen 233 VTFLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKE 312 (316)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhh
Confidence 33333333321 123444556666777777777777777888999999999999999999999999999999964443
Q ss_pred c
Q 015473 355 K 355 (406)
Q Consensus 355 k 355 (406)
|
T Consensus 313 ~ 313 (316)
T KOG1441|consen 313 K 313 (316)
T ss_pred h
Confidence 3
No 26
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.40 E-value=2.2e-11 Score=118.92 Aligned_cols=228 Identities=13% Similarity=0.159 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 015473 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTA 200 (406)
Q Consensus 121 ~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~ 200 (406)
....-+.+.++.|.....||.+++.+..++++++.=+||..++.++.+||+++.+.+++++.+.||+++...+..++++.
T Consensus 161 ~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~ 240 (416)
T KOG2765|consen 161 LSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDL 240 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccC
Confidence 35556678889999999999999999999999999999999999999999999999999999999999977654332211
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHH
Q 015473 201 MGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQ-YDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKA 279 (406)
Q Consensus 201 ~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~-~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~~ 279 (406)
. ......|.++.+++++..|++.+..+|-..++ .+.++.+.--+.+++..++.-|.+.+-..+ +.+ -|.-++..
T Consensus 241 ~-a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~-~~e---~F~lP~~~ 315 (416)
T KOG2765|consen 241 P-ASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFF-GEE---RFELPSST 315 (416)
T ss_pred C-ccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHh-ccC---cccCCCCc
Confidence 1 11135788999999998888887776644433 233332222222333333333222211112 221 23333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcccccc
Q 015473 280 TMLLIFNNAAQGILSCFFLKY-----ADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSK 353 (406)
Q Consensus 280 ~~l~i~~~aigg~~v~~~~ky-----~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~~~~ 353 (406)
....++..++.|.+++=.+|. .++.+...+.++++.++++...++=|.++++.+++|.+.|+.|-++.+.+.+.
T Consensus 316 q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~ 394 (416)
T KOG2765|consen 316 QFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSEN 394 (416)
T ss_pred eeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccc
Confidence 222333444556656633332 35666666677888999999999999999999999999999999998886555
No 27
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.39 E-value=5.7e-11 Score=113.32 Aligned_cols=262 Identities=18% Similarity=0.183 Sum_probs=175.5
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccCh
Q 015473 66 DGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNP 145 (406)
Q Consensus 66 ~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~ 145 (406)
++.+.|+- -++-+..++|++.+........... +..|..+++ .+..| +.+..|+.-++.-.+..++++|++.
T Consensus 39 ~~~f~fPL-f~ts~h~~v~flfa~~~~~l~~~~~-~r~r~~~sw---~~~Lr---~~aPtalata~DIGLSN~sl~yVtl 110 (349)
T KOG1443|consen 39 TKNFHFPL-FVTSLHLAVKFLFAALSRRLYQCSV-PRARVVLSW---RDYLR---RLAPTALATALDIGLSNWSLEYVTL 110 (349)
T ss_pred hcCcCCch-HHHHHHHHHHHHHHHHHHHHHhccC-CccccCCcH---HHHHH---Hhhhhhhhhhcccccccceeeeeee
Confidence 34455554 4667889999988866543322211 101222322 22222 4667778888999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHH
Q 015473 146 ATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASV 225 (406)
Q Consensus 146 ~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~~~~~~~~~G~ll~L~a~~~sala~V 225 (406)
+.|.+.++..++|+.+|+.++-=||.++.=...+++..+|+.+...++. +.+..|..+++++++++|+...
T Consensus 111 SlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsT---------qf~i~Gf~lv~~aS~~sGlRW~ 181 (349)
T KOG1443|consen 111 SLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKST---------QFNIEGFFLVLAASLLSGLRWA 181 (349)
T ss_pred eeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccc---------ceeehhHHHHHHHHHhhhhhHH
Confidence 9999999999999999999999999999999999999999998877653 2344688999999999999999
Q ss_pred HHHHHhhhcC--CcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---cccc--cCChHHHHHHHHHHHHHHHHHHHHH
Q 015473 226 FNEYALKSQY--DTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDN---LDIL--QGHSKATMLLIFNNAAQGILSCFFL 298 (406)
Q Consensus 226 ~~ekllk~~~--~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~---~~~~--~g~~~~~~l~i~~~aigg~~v~~~~ 298 (406)
+.++++++++ ..+|.....++.-+..+..+|. ...+||+.. ...| ++.. ..+..+...++||.+ ++.+
T Consensus 182 ~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~---~l~fEG~~~~~~s~~f~~~d~~-~~~rv~g~i~l~g~l-aF~l 256 (349)
T KOG1443|consen 182 FTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPL---SLLFEGLHLITSSSIFRFQDTG-LILRVIGLISLGGLL-AFLL 256 (349)
T ss_pred HHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHH---HHHHcccccchhhhHHHhcCcc-HHHHHHHHHHHHHHH-HHHH
Confidence 9999998752 2333333333332222222222 224677631 1222 2222 233344444555543 2333
Q ss_pred HH--------hhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015473 299 KY--------ADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS 349 (406)
Q Consensus 299 ky--------~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~ 349 (406)
-. .+.+..+.+....-+.+.+++..+.++.++..-++|..+...|+..|..
T Consensus 257 ~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~ 315 (349)
T KOG1443|consen 257 EFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN 315 (349)
T ss_pred HHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence 22 2333334444445578889999999999999999999999999999844
No 28
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.37 E-value=5.4e-10 Score=109.18 Aligned_cols=267 Identities=14% Similarity=0.084 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHH-
Q 015473 43 VFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVL- 121 (406)
Q Consensus 43 ~ll~~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~- 121 (406)
++++...+++|+++++..|..+ | .++...+ +-.+..++...+....+... +.. ++.+.
T Consensus 3 ~l~~lia~~~wGs~g~~~k~~~--g---~~~~~~~--~~~~g~l~~~~~~~~~~~~~----~~~----------~~~~~~ 61 (290)
T TIGR00776 3 ILIALIPALFWGSFVLINVKIG--G---GPYSQTL--GTTFGALILSIAIAIFVLPE----FWA----------LSIFLV 61 (290)
T ss_pred hHHHHHHHHHHhhhHHHHhccC--C---CHHHHHH--HHHHHHHHHHHHHHHHhCCc----ccc----------cHHHHH
Confidence 4566778888999999988664 2 2233333 22222222222211111100 100 11122
Q ss_pred HHHHHHHHHHHHHHHHHHHhccChHHHHHHhh-hHHHHHHHHHHHHhCCCCCHHH----HHHHHHHHHHHhhhccCCCCC
Q 015473 122 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSN-LKVLVIAVLLKIIMRRRFSIIQ----WEALALLLIGISVNQLRSLPE 196 (406)
Q Consensus 122 ~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~-~k~l~talls~l~Lkerls~~q----wlal~ll~~GV~lv~~~~~~~ 196 (406)
-.+.+++..+.|.++|.+.+++..++...+.+ +.+++.++++.+++|||.++++ ++|+++.++|+.++...+.++
T Consensus 62 g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~ 141 (290)
T TIGR00776 62 GLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKS 141 (290)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccc
Confidence 33444668999999999999999999999999 9999999999999999999999 999999999998875543211
Q ss_pred CCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHH----HHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Q 015473 197 GSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYL----QNLFLYGYGAIFNFLGILVTAIFKGPDNLDI 272 (406)
Q Consensus 197 ~~~~~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~----~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~ 272 (406)
.. .........|++++++++++.+++.+..|+. + + +++. +..-+.+.+++++.+. ....+
T Consensus 142 ~~-~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~-~-~---~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~----- 205 (290)
T TIGR00776 142 AG-IKSEFNFKKGILLLLMSTIGYLVYVVVAKAF-G-V---DGLSVLLPQAIGMVIGGIIFNLGH-----ILAKP----- 205 (290)
T ss_pred cc-cccccchhhHHHHHHHHHHHHHHHHHHHHHc-C-C---CcceehhHHHHHHHHHHHHHHHHH-----hcccc-----
Confidence 11 0000111348899999999999988888865 2 2 2222 2222222333333221 00111
Q ss_pred ccCChHHHHHHHH---HHHHHHHHHHHHHH-HhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHH----HHHHHHHHHH
Q 015473 273 LQGHSKATMLLIF---NNAAQGILSCFFLK-YADAILKKYSSTVATIFTGIASAVLFGHTLTMNFL----LGISIVFISM 344 (406)
Q Consensus 273 ~~g~~~~~~l~i~---~~aigg~~v~~~~k-y~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~----lG~~LVi~gv 344 (406)
+ .+...|..++ ..+++..+.....+ +.+........+..++.+++.+++++||..+..++ +|.++++.|+
T Consensus 206 ~--~~~~~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~ 283 (290)
T TIGR00776 206 L--KKYAILLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAA 283 (290)
T ss_pred h--HHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHH
Confidence 1 1112222221 12233333323334 66666666777788999999999999999999999 9999999998
Q ss_pred HHhc
Q 015473 345 HQFF 348 (406)
Q Consensus 345 ~ly~ 348 (406)
.+-.
T Consensus 284 ~l~~ 287 (290)
T TIGR00776 284 NILG 287 (290)
T ss_pred HHHh
Confidence 7643
No 29
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=6.3e-10 Score=107.30 Aligned_cols=225 Identities=11% Similarity=0.131 Sum_probs=151.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCC
Q 015473 118 NNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEG 197 (406)
Q Consensus 118 ~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~ 197 (406)
...++..++++|.+.-.-.-.+++|++.+++.++++..|+.||+.-.+++|.|.++.-|.++.+..+|.......+.
T Consensus 76 ~~kk~~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~--- 152 (314)
T KOG1444|consen 76 TAKKWFPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDL--- 152 (314)
T ss_pred HHHHHccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccc---
Confidence 34468888899998888888999999999999999999999999999999999999999999999999877644331
Q ss_pred CCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-c-cccc-
Q 015473 198 STAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDN-L-DILQ- 274 (406)
Q Consensus 198 ~~~~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~-~-~~~~- 274 (406)
..+..|+.+.+..++..+...+|.|+..+.. +.+.+-...+-.+++.+...... ...|+.. . .-+.
T Consensus 153 ------sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~-~l~~~~lv~yNnl~~L~~l~~~~----~~~ge~~~l~~~~~~ 221 (314)
T KOG1444|consen 153 ------SFNLRGYSWALANCLTTAAFVVYVKKSVDSA-NLNKFGLVFYNNLLSLPPLLILS----FITGELDALSLNFDN 221 (314)
T ss_pred ------eecchhHHHHHHHHHHHHHHHHHHHHhhccc-cccceeEEeehhHHHHHHHHHHH----HHhcchHHHHhhccc
Confidence 1223488999999999999999999987753 22223222232333333322221 1222210 0 0011
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHH----HHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015473 275 GHSKATMLLIFNNAAQGILSCFFL----KYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS 350 (406)
Q Consensus 275 g~~~~~~l~i~~~aigg~~v~~~~----ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~ 350 (406)
......|..+....+.|..+++.. +.-++..-..........+.+...+++|.+.++.-++|..+-+.|..+|+..
T Consensus 222 ~~~~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~ 301 (314)
T KOG1444|consen 222 WSDSSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYA 301 (314)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhh
Confidence 111234555556666666555443 3233332222222344566667777778999999999999999999999985
Q ss_pred cccccc
Q 015473 351 LSKAKD 356 (406)
Q Consensus 351 ~~~~k~ 356 (406)
..++|+
T Consensus 302 ~~~~k~ 307 (314)
T KOG1444|consen 302 TFRKKK 307 (314)
T ss_pred hhhhcc
Confidence 444433
No 30
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.17 E-value=6.7e-12 Score=116.76 Aligned_cols=215 Identities=15% Similarity=0.219 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCC
Q 015473 122 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAM 201 (406)
Q Consensus 122 ~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~~ 201 (406)
+.+.|+...-.|.+.-.|.||++....+++-.-.++.+.+++|++||.|+.+.|..++++...|+.++...+...++...
T Consensus 81 Yilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~ag 160 (336)
T KOG2766|consen 81 YILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAG 160 (336)
T ss_pred hhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccC
Confidence 88889999999999999999999999999999999999999999999999999999999999999887665543333222
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHH
Q 015473 202 GLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATM 281 (406)
Q Consensus 202 ~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~ 281 (406)
|.+ +..|..++++++.+.|..++..|.+.|+ .+....+-+++++|.+++.+-+. .+... -.--+|++...
T Consensus 161 gsn-p~~GD~lvi~GATlYaVSNv~EEflvkn---~d~~elm~~lgLfGaIIsaIQ~i----~~~~~--~~tl~w~~~i~ 230 (336)
T KOG2766|consen 161 GSN-PVKGDFLVIAGATLYAVSNVSEEFLVKN---ADRVELMGFLGLFGAIISAIQFI----FERHH--VSTLHWDSAIF 230 (336)
T ss_pred CCC-CccCcEEEEecceeeeeccccHHHHHhc---CcHHHHHHHHHHHHHHHHHHHHh----hhccc--eeeEeehHHHH
Confidence 222 2357788899999999999999999887 35566677889999998876633 22221 00112332211
Q ss_pred HHH---HHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhc
Q 015473 282 LLI---FNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFF 348 (406)
Q Consensus 282 l~i---~~~aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~ 348 (406)
..+ +..-+...++...+|..++..-+....++-.++.++ ..||-+.+|..++..+.+..|.++|.
T Consensus 231 ~yl~f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs 298 (336)
T KOG2766|consen 231 LYLRFALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYS 298 (336)
T ss_pred HHHHHHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEee
Confidence 111 111111223333344444443344444555666666 77899999999999999999999993
No 31
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=1.2e-10 Score=109.62 Aligned_cols=267 Identities=11% Similarity=0.158 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCc--chhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHH
Q 015473 73 PISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPL--LSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKM 150 (406)
Q Consensus 73 ~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~--l~~~~~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~v 150 (406)
|.-+.+.+.++-..+|..+-.....-......|- ++.++ .|+.+++. +.+.+.-....+.++|.+.+.|++
T Consensus 61 plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t----~r~vlpls---vVfi~mI~fnnlcL~yVgVaFYyv 133 (347)
T KOG1442|consen 61 PLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLAT----ARQVLPLS---VVFILMISFNNLCLKYVGVAFYYV 133 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHH----HHhhcchh---heeeeehhccceehhhcceEEEEe
Confidence 3445678888888777765332211000001111 22222 23333333 333333333445799999999999
Q ss_pred HhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Q 015473 151 LSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYA 230 (406)
Q Consensus 151 l~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~~~~~~~~~G~ll~L~a~~~sala~V~~ekl 230 (406)
-+++..+|+.++++++||+|-+..-..+..+.+.|--+- .+.|+. ..+.++.|.+++..++++-|+-++|++|.
T Consensus 134 gRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lG---vdqE~~---~~~ls~~GvifGVlaSl~vAlnaiytkk~ 207 (347)
T KOG1442|consen 134 GRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLG---VDQEGS---TGTLSWIGVIFGVLASLAVALNAIYTKKV 207 (347)
T ss_pred ccchhhhHHHHhHHhhcccccccccceeehhheehheec---cccccc---cCccchhhhHHHHHHHHHHHHHHHhhhee
Confidence 999999999999999999999988777766666655331 122222 12345679999999999999999999987
Q ss_pred hhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-c-cccccCChHHHHHHHHHHHHHHHHHHHHH----HHhhhH
Q 015473 231 LKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPD-N-LDILQGHSKATMLLIFNNAAQGILSCFFL----KYADAI 304 (406)
Q Consensus 231 lk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~-~-~~~~~g~~~~~~l~i~~~aigg~~v~~~~----ky~~~i 304 (406)
+..- +..+|...++.+.++.++.+|.+.+ .|+- + .++-+-+.++.|.+....++.|..++++. |..++.
T Consensus 208 l~~v-~~~iw~lt~ynnv~a~lLflpll~l----nge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TSpl 282 (347)
T KOG1442|consen 208 LPPV-GDCIWRLTAYNNVNALLLFLPLLIL----NGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTGWQIKVTSPL 282 (347)
T ss_pred cccc-cCeehhhHHHHHHHHHHHHHHHHHH----cchHHHHcCcccchHHHHHHHHHHHHHHHHHhhheeeEEEEecccc
Confidence 6543 5688999999999999988887654 2321 1 12223446678888888888888777665 556677
Q ss_pred HHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcccccccccc
Q 015473 305 LKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDE 357 (406)
Q Consensus 305 ~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~~~~~k~~ 357 (406)
+.+...+..-..-+++++.+.+|.-+..-|-|-.+|+.|...|+...+..+++
T Consensus 283 ThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~ 335 (347)
T KOG1442|consen 283 THNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRK 335 (347)
T ss_pred eeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHh
Confidence 77777767777788899999999999999999999999999999865554443
No 32
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.91 E-value=5.4e-08 Score=85.30 Aligned_cols=138 Identities=14% Similarity=0.204 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc----CCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc----cccc-CC--h
Q 015473 209 AYIYTLIFITVPSMASVFNEYALKSQ----YDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNL----DILQ-GH--S 277 (406)
Q Consensus 209 G~ll~L~a~~~sala~V~~ekllk~~----~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~----~~~~-g~--~ 277 (406)
|.++++.++++.|+..++.|+++++. .+.+......+++..+.++.++..+. .|++... .... .. +
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~---~e~~~~~~~~~~~~~~~~~~~ 77 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFL---LEGPQLSSFFSEIFGEELSSD 77 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHH---HhhhhhhhHHHHhhhhhhcch
Confidence 46788999999999999999999873 34566656666667777766665443 3443211 0111 00 2
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015473 278 KATMLLIFNNAA----QGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS 349 (406)
Q Consensus 278 ~~~~l~i~~~ai----gg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~ 349 (406)
...+..++..++ .......++++.+++.......+..++.+++|+++|||++|...++|.++.+.|+++|++
T Consensus 78 ~~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 78 PNFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 233333333333 334555777999999999999999999999999999999999999999999999999974
No 33
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.83 E-value=3.6e-08 Score=83.04 Aligned_cols=133 Identities=18% Similarity=0.309 Sum_probs=103.7
Q ss_pred HHHHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHHHH
Q 015473 45 LVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAV 124 (406)
Q Consensus 45 l~~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~v 124 (406)
+.+.+++.+++-+++.|.--++ .+|....+.|.++-++++..+....++.+..++-. .|......+
T Consensus 7 ~ALLsA~fa~L~~iF~KIGl~~----vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~----------~k~~lflil 72 (140)
T COG2510 7 YALLSALFAGLTPIFAKIGLEG----VDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIG----------PKSWLFLIL 72 (140)
T ss_pred HHHHHHHHHHHHHHHHHHhccc----cCccHHHHHHHHHHHHHHHHHHHhcCceecccccC----------cceehhhhH
Confidence 3444566677777777753232 45677788999999999998888877655443211 123234455
Q ss_pred HHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 015473 125 PAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQL 191 (406)
Q Consensus 125 pAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~ 191 (406)
-++.-.+.-.++|.|++.=+++...-+.++.|++++++++++||||+|..+|+++.+..+|++++..
T Consensus 73 SGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 73 SGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 5577779999999999999999999999999999999999999999999999999999999988753
No 34
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.83 E-value=2.1e-07 Score=85.48 Aligned_cols=231 Identities=12% Similarity=0.130 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 015473 120 VLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGST 199 (406)
Q Consensus 120 ~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~ 199 (406)
..+..|+++.+.--+-.--+++|++.+.|.+.+++.++.+|..-++++|.|++.....+-++..+.-.+....+.+....
T Consensus 69 K~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~ 148 (309)
T COG5070 69 KKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAF 148 (309)
T ss_pred hhhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHH
Confidence 35666776665554455568999999999999999999999999999999999999999988888777665443211100
Q ss_pred -CCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChH
Q 015473 200 -AMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSK 278 (406)
Q Consensus 200 -~~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~ 278 (406)
...+. .|++++...|+.++..-...|+..|-. +..-+..+++-.+.+.++.+.. +...|+-++.+.-.+.+.
T Consensus 149 ~~~~lN---~GY~Wm~~NclssaafVL~mrkri~lt-Nf~d~dtmfYnNllslPiL~~~---s~~~edws~~n~annl~~ 221 (309)
T COG5070 149 KAQILN---PGYLWMFTNCLSSAAFVLIMRKRIKLT-NFKDFDTMFYNNLLSLPILLSF---SFLFEDWSPGNLANNLSV 221 (309)
T ss_pred HhcccC---CceEEEehhhHhHHHHHHHHHHhhccc-ccchhhHHHHhhhHHHHHHHHH---HHHhccCCcchhhcCCCh
Confidence 00111 377888888877775555555554421 1111223333344444433222 223443322223344443
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccccccc
Q 015473 279 ATMLLIFNNAAQGI----LSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKA 354 (406)
Q Consensus 279 ~~~l~i~~~aigg~----~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~~~~~ 354 (406)
-....++..++... +.+++++-.++..-....++...-..+.|.++||++.+...+..+.+-+.+..+|.....+|
T Consensus 222 d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k 301 (309)
T COG5070 222 DSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKK 301 (309)
T ss_pred HHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222222333332 33344454555555555555666778899999999999999999999999999998755554
Q ss_pred ccc
Q 015473 355 KDE 357 (406)
Q Consensus 355 k~~ 357 (406)
++.
T Consensus 302 ~q~ 304 (309)
T COG5070 302 QQN 304 (309)
T ss_pred Hhc
Confidence 443
No 35
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.81 E-value=1.6e-07 Score=78.79 Aligned_cols=71 Identities=25% Similarity=0.371 Sum_probs=62.9
Q ss_pred HHHHHHH-HHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCC
Q 015473 123 AVPAFLY-AINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSL 194 (406)
Q Consensus 123 ~vpAlly-~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~ 194 (406)
..-+++. ..++.++++|+++.| +...++.++.|+++++++++++|||+++++|.++++.++|++++..++.
T Consensus 38 ~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 38 ILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 3335555 489999999999999 5888999999999999999999999999999999999999999876553
No 36
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.77 E-value=7.5e-08 Score=80.56 Aligned_cols=121 Identities=21% Similarity=0.283 Sum_probs=90.0
Q ss_pred HhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHHHHHHHH-HHH
Q 015473 53 VGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFL-YAI 131 (406)
Q Consensus 53 ~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~vpAll-y~~ 131 (406)
++...++.|..-++ +++...++.+.+...+ ...+.....+... +..+ .++.......+.+ ..+
T Consensus 3 ~a~~~~~~k~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~-------~~~~~~~~~~~~~~~~~ 66 (126)
T PF00892_consen 3 WAIYSVFSKKLLKK----ISPLSITFWRFLIAGI-LLILLLILGRKPF----KNLS-------PRQWLWLLFLGLLGTAL 66 (126)
T ss_pred eeeHHHHHHHHhcc----CCHHHHHHHHHHHHHH-HHHHHHhhccccc----cCCC-------hhhhhhhhHhhccceeh
Confidence 44445555544222 5688889999999886 4444333332110 1111 1233346666666 589
Q ss_pred HHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhh
Q 015473 132 NNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVN 189 (406)
Q Consensus 132 ~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv 189 (406)
.+.+.+.++++.+++..+++.++.|+++++++++++||+++++||.++++.++|+.++
T Consensus 67 ~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 67 AYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999876
No 37
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.69 E-value=4.1e-05 Score=72.02 Aligned_cols=205 Identities=17% Similarity=0.061 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 015473 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTA 200 (406)
Q Consensus 121 ~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~ 200 (406)
...+=+.....-|.++|.+++.+|.++...+-.+-|+.+++++ .||..---|+++.+ .|+.+..-.+. +
T Consensus 73 ~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~----sRr~~d~vwvaLAv--lGi~lL~p~~~--~--- 141 (292)
T COG5006 73 ALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALLS----SRRLRDFVWVALAV--LGIWLLLPLGQ--S--- 141 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHHHh----ccchhhHHHHHHHH--HHHHhheeccC--C---
Confidence 3445556667889999999999999999999999999988765 46665555666654 45544421111 1
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHH
Q 015473 201 MGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKAT 280 (406)
Q Consensus 201 ~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~ 280 (406)
..+.+..|..+.+.+..+|+.+=+.-+|.-+.. ....-...-+ ..+.++.+|.-. ...++ . +..++ .
T Consensus 142 -~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~--~g~~g~a~gm-~vAaviv~Pig~---~~ag~---~-l~~p~--l 208 (292)
T COG5006 142 -VWSLDPVGVALALGAGACWALYIVLGQRAGRAE--HGTAGVAVGM-LVAALIVLPIGA---AQAGP---A-LFSPS--L 208 (292)
T ss_pred -cCcCCHHHHHHHHHHhHHHHHHHHHcchhcccC--CCchHHHHHH-HHHHHHHhhhhh---hhcch---h-hcChH--H
Confidence 122345688999999999999888888876432 2222111122 222333333221 11122 1 11222 1
Q ss_pred HHHHHHHHH-----HHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015473 281 MLLIFNNAA-----QGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS 349 (406)
Q Consensus 281 ~l~i~~~ai-----gg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~ 349 (406)
...-+..++ -..+=...+++.+.-.-+...++.+.++++.|++++||.+|..+|+|++.|+.+..-...
T Consensus 209 l~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~l 282 (292)
T COG5006 209 LPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTL 282 (292)
T ss_pred HHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcccc
Confidence 111122222 222333455666655555666678899999999999999999999999999998875554
No 38
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.56 E-value=2.8e-06 Score=74.32 Aligned_cols=146 Identities=16% Similarity=0.240 Sum_probs=103.5
Q ss_pred HHHHHHHHHHhhHhHhhhhcccC---CcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhH
Q 015473 44 FLVVGDCMLVGLQPILVYMSKVD---GRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNV 120 (406)
Q Consensus 44 ll~~~~~~~~~~~~~l~k~s~~~---g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~ 120 (406)
++.+.+.++.+.+.+++|....+ ++...++.+..+.......++..+.....+..+...........+..+..+...
T Consensus 3 ~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 82 (153)
T PF03151_consen 3 ILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIF 82 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHH
Confidence 45566677777777775543222 224577888889999998888877655433211100000000000000112234
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhh
Q 015473 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVN 189 (406)
Q Consensus 121 ~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv 189 (406)
.....+++....|...|..+++++|.+++++...|.+.+.++++++++|+++..|+.|+.+.++|+.+-
T Consensus 83 ~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y 151 (153)
T PF03151_consen 83 LLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY 151 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence 566677889999999999999999999999999999999999999999999999999999999998763
No 39
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.52 E-value=1.9e-06 Score=77.91 Aligned_cols=214 Identities=13% Similarity=0.114 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCcc
Q 015473 126 AFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPV 205 (406)
Q Consensus 126 Ally~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~~~~~~ 205 (406)
+.+.++.|+++..|+..++++..+.+..+.-.|+-+++++.||.|+...+.++.++...|++++.+.+... ..
T Consensus 60 ~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~-------a~ 132 (290)
T KOG4314|consen 60 SIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEH-------AD 132 (290)
T ss_pred EEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchh-------hh
Confidence 35677889999999999999999999999999999999999999999999999999999999987654211 12
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCcchHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCccccccCChHHHHH
Q 015473 206 AMGAYIYTLIFITVPSMASVFNEYALKSQ--YDTSIYLQNLFLYGYGAIFNF-LGILVTAIFKGPDNLDILQGHSKATML 282 (406)
Q Consensus 206 ~~~G~ll~L~a~~~sala~V~~ekllk~~--~~~s~~~~~~~l~~~g~l~~l-~~~~~~~~~~~~~~~~~~~g~~~~~~l 282 (406)
.+.|+.+...+++.++++-|..++..... .+.+.+ +--+.++-.++.- +.+.. .+++-+.+..|... .|.
T Consensus 133 e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~F--mS~LGF~NL~~~~~~~lIL--~~T~VE~~qsFA~~---PWG 205 (290)
T KOG4314|consen 133 EIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHF--MSCLGFFNLCFISFPALIL--AFTGVEHLQSFAAA---PWG 205 (290)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHH--HHHHHHHHHHHHhhhHHHH--HHhchHHHHHHhhC---Cch
Confidence 35788888999999999888888776542 122222 2233334444332 22221 12332211111111 122
Q ss_pred HHHHHHH----HHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcccccc
Q 015473 283 LIFNNAA----QGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSK 353 (406)
Q Consensus 283 ~i~~~ai----gg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~~~~ 353 (406)
.....|. ...++.+-+-...+++.+.....++...+....++=+-..+..+++|..++++|-.+.-.|.+|
T Consensus 206 ~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d~ 280 (290)
T KOG4314|consen 206 CLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPEDK 280 (290)
T ss_pred hhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccch
Confidence 2111111 1111111112223344444444555667788888778889999999999999998887776443
No 40
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.35 E-value=2.8e-05 Score=76.44 Aligned_cols=65 Identities=18% Similarity=0.315 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 015473 127 FLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQL 191 (406)
Q Consensus 127 lly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~ 191 (406)
+++.+.+.+.+.|+.+.|.+..+=+....+++.++++..+||||+++++|.+..+.++|++++..
T Consensus 58 ~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 58 LLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred HHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence 46788999999999999999999999999999999999999999999999999999999977643
No 41
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.34 E-value=5.8e-05 Score=72.53 Aligned_cols=214 Identities=12% Similarity=0.100 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccChHHHHHHh-hhHHHHHHHHHHHHhCCCCCHHHHH----HHHHHHHHHhhhccCCC
Q 015473 120 VLLAVPAFLYAINNYLKFIMQLYFNPATVKMLS-NLKVLVIAVLLKIIMRRRFSIIQWE----ALALLLIGISVNQLRSL 194 (406)
Q Consensus 120 ~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~-~~k~l~talls~l~Lkerls~~qwl----al~ll~~GV~lv~~~~~ 194 (406)
+.-.+-+++..+.+.++|.+.+++..+...=++ ..+++.++++.+++++|.-+..+++ |+++..+|+.+...++.
T Consensus 46 ~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~ 125 (269)
T PF06800_consen 46 IVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDK 125 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccc
Confidence 345666788999999999999999887776554 6888999999999999999998887 88899999998877664
Q ss_pred CCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc
Q 015473 195 PEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQ 274 (406)
Q Consensus 195 ~~~~~~~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~ 274 (406)
.++..+. .....-|++..+++.+...++.+..+. .+ .+.+..-+-. ..|+.+...... ..... .+++
T Consensus 126 ~~~~~~~-~~~~~kgi~~Ll~stigy~~Y~~~~~~-~~----~~~~~~~lPq-aiGm~i~a~i~~---~~~~~---~~~~ 192 (269)
T PF06800_consen 126 KSDKSSS-KSNMKKGILALLISTIGYWIYSVIPKA-FH----VSGWSAFLPQ-AIGMLIGAFIFN---LFSKK---PFFE 192 (269)
T ss_pred ccccccc-ccchhhHHHHHHHHHHHHHHHHHHHHh-cC----CChhHhHHHH-HHHHHHHHHHHh---hcccc---cccc
Confidence 3321110 111123666666666666665554433 22 2333111111 122222211111 11111 1223
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccH----HHHHHHHHHHHHHHH
Q 015473 275 GHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTM----NFLLGISIVFISMHQ 346 (406)
Q Consensus 275 g~~~~~~l~i~~~aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~----~~~lG~~LVi~gv~l 346 (406)
..++.-.+.-+.-+++.+..-...+..+....-...-++++++++.|+++++|.=+. ..++|.++++.|..+
T Consensus 193 k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 193 KKSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred cchHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 333222222223344554443334433322222333478899999999999998764 467888888887643
No 42
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.32 E-value=2.6e-05 Score=74.13 Aligned_cols=129 Identities=15% Similarity=0.097 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHHH
Q 015473 44 FLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLA 123 (406)
Q Consensus 44 ll~~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~ 123 (406)
++.+.+.++++...+..|...++ ++.++.+....+.++..++........++. .+ .+. ++.....
T Consensus 131 ~~~l~a~~~~a~~~~~~k~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~-~~~-------~~~~~~~ 195 (260)
T TIGR00950 131 LLGLGSGISFALGTVLYKRLVKK--EGPELLQFTGWVLLLGALLLLPFAWFLGPN-----PQ-ALS-------LQWGALL 195 (260)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhc--CCchHHHHHHHHHHHHHHHHHHHHHhcCCC-----CC-cch-------HHHHHHH
Confidence 35556677788888887765432 122222222234555555544443332211 11 111 1222344
Q ss_pred HHHHH-HHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Q 015473 124 VPAFL-YAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGIS 187 (406)
Q Consensus 124 vpAll-y~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~ 187 (406)
..+++ ..+...+++.++++.++++.+++..+.|+++++++++++||+++..||.+..+.++|++
T Consensus 196 ~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 196 YLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 44544 56888999999999999999999999999999999999999999999999999999874
No 43
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.25 E-value=1.5e-05 Score=66.39 Aligned_cols=119 Identities=18% Similarity=0.257 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHH-----HHHHHHHHHHHH
Q 015473 219 VPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATM-----LLIFNNAAQGIL 293 (406)
Q Consensus 219 ~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~-----l~i~~~aigg~~ 293 (406)
++|..+++.|+..++ .++...+.+-...+.+ .++.... .+... ....+...+ ..++..+++..+
T Consensus 2 ~~a~~~~~~k~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (126)
T PF00892_consen 2 SWAIYSVFSKKLLKK---ISPLSITFWRFLIAGI-LLILLLI---LGRKP----FKNLSPRQWLWLLFLGLLGTALAYLL 70 (126)
T ss_pred eeeeHHHHHHHHhcc---CCHHHHHHHHHHHHHH-HHHHHHh---hcccc----ccCCChhhhhhhhHhhccceehHHHH
Confidence 467788889988876 3455455555555544 2222221 11110 111111111 112234556667
Q ss_pred HHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhc
Q 015473 294 SCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFF 348 (406)
Q Consensus 294 v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~ 348 (406)
....+|+.+.........++++++.++++++++|+++..+++|+.+++.|+.+.+
T Consensus 71 ~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 71 YFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 7788899998888888999999999999999999999999999999999998653
No 44
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.23 E-value=1.3e-05 Score=67.12 Aligned_cols=65 Identities=11% Similarity=0.120 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 015473 126 AFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQ 190 (406)
Q Consensus 126 Ally~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~ 190 (406)
.+.|.+...+.-.+++.+|.+.+..+.++.++.+++++++++|||++++||+++.+..+|++++.
T Consensus 44 ~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 44 LACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 36789999999999999999999999999999999999999999999999999999999998874
No 45
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.14 E-value=2.9e-05 Score=76.00 Aligned_cols=140 Identities=12% Similarity=0.127 Sum_probs=93.8
Q ss_pred HHHHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHH-----hhhhh
Q 015473 45 LVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQ-----AARNN 119 (406)
Q Consensus 45 l~~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~-----~~r~~ 119 (406)
+.+.+.++++.+.+..|....+. ++++.+..+.+.....+..+++....... +... ..+.+ .....
T Consensus 149 ~~l~a~~~~a~~~v~~k~~~~~~--~~~~~~~~~~~~~~~~~~l~p~~~~~~~~------~~~~-~~~~~~~~~~~~~~~ 219 (302)
T TIGR00817 149 SAMISNITFVSRNIFSKKAMTIK--SLDKTNLYAYISIMSLFLLSPPAFITEGP------PFLP-HGFMQAISGVNVTKI 219 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhccC--CCCcccHHHHHHHHHHHHHHHHHHHHcch------HHHH-HHHHHhhcccCchHH
Confidence 45556667887777766432222 25677777777776666655554332210 0000 00000 00011
Q ss_pred HH-HHHHHH-HHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCC
Q 015473 120 VL-LAVPAF-LYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRS 193 (406)
Q Consensus 120 ~~-~~vpAl-ly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~ 193 (406)
+. ....+. .+...|.+.|.+++++++.++++....+|++++++++++++|+++..|+++.++.++|+.+.+...
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k 295 (302)
T TIGR00817 220 YTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVK 295 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence 11 223333 566777888999999999999999999999999999999999999999999999999999876543
No 46
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.07 E-value=6.1e-05 Score=75.64 Aligned_cols=144 Identities=14% Similarity=0.158 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhhHhHhhhhcccCCc---ccchHHHHHHHHHHHHHHHHHHHHH-HHhhcccCC--CC-CcchhHHHHHhh
Q 015473 44 FLVVGDCMLVGLQPILVYMSKVDGR---FKFSPISVNFLTEMTKVLFAIVMLF-FQARHQKVG--EK-PLLSISTFIQAA 116 (406)
Q Consensus 44 ll~~~~~~~~~~~~~l~k~s~~~g~---~~~~~~~vv~~~E~~kl~i~~~ll~-~~~~~~~~~--~~-~~l~~~~~~~~~ 116 (406)
++.+.+.+.++.+.++.|...++.+ .++++...-...-++..++.+++.. .+....... .. .......+.
T Consensus 197 ~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~--- 273 (350)
T PTZ00343 197 WCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKG--- 273 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchH---
Confidence 3445566778888877664322211 1345554444445566666655543 332100000 00 000000000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 015473 117 RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQ 190 (406)
Q Consensus 117 r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~ 190 (406)
.-......-++.|.++|.+.|++++++++.++++...+||+++.++++++++|+++..|+++.++.++|+.+.+
T Consensus 274 ~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 274 IIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 00112334467899999999999999999999999999999999999999999999999999999999998764
No 47
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.06 E-value=3.2e-05 Score=65.49 Aligned_cols=127 Identities=17% Similarity=0.236 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc-CCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cccccCChHHHHHHHHHH
Q 015473 210 YIYTLIFITVPSMASVFNEYALKSQ-YDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDN-LDILQGHSKATMLLIFNN 287 (406)
Q Consensus 210 ~ll~L~a~~~sala~V~~ekllk~~-~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~-~~~~~g~~~~~~l~i~~~ 287 (406)
..+.+++++++++..++.+--+++- ++.-..+++.-+ .++...... ..|+.. .+. .+...|..+...
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi----~~~l~~v~~----~~g~~~~~~~---~~~k~~lflilS 73 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVI----LIFLLIVLL----VTGNWQAGGE---IGPKSWLFLILS 73 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHH----HHHHHHHHH----hcCceecccc---cCcceehhhhHH
Confidence 3667888999999887554444532 111122333332 221111111 233311 011 123334443333
Q ss_pred HH----HHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHh
Q 015473 288 AA----QGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQF 347 (406)
Q Consensus 288 ai----gg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly 347 (406)
++ +-++-...+|..+.....+.+.+++++++++|++++||.+|..+++|..+|.+|..+-
T Consensus 74 Gla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailv 137 (140)
T COG2510 74 GLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILV 137 (140)
T ss_pred HHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeE
Confidence 33 3334445556666666678888999999999999999999999999999999987653
No 48
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.96 E-value=0.00027 Score=71.20 Aligned_cols=64 Identities=11% Similarity=0.102 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCC
Q 015473 130 AINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRS 193 (406)
Q Consensus 130 ~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~ 193 (406)
.+...++++++++++|+...+...+.|++++++++++|+|++++.|+++.++.+.|+.+++.+.
T Consensus 267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~ 330 (358)
T PLN00411 267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGK 330 (358)
T ss_pred HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhh
Confidence 3566788999999999999999999999999999999999999999999999999999987543
No 49
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.93 E-value=0.00076 Score=58.03 Aligned_cols=121 Identities=14% Similarity=0.080 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHHHHHHH
Q 015473 209 AYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNA 288 (406)
Q Consensus 209 G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~l~i~~~a 288 (406)
|+++.++++++.+.+.+..++-+++..+.+... . . .. ..... . .+..+.++.+...+
T Consensus 3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~---~----~-~~-~~~~~-----~---------~p~~~i~lgl~~~~ 59 (129)
T PRK02971 3 GYLWGLASVLLASVAQLSLKWGMSRLPLLSHAW---D----F-IA-ALLAF-----G---------LALRAVLLGLAGYA 59 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCccchh---H----H-HH-HHHHH-----h---------ccHHHHHHHHHHHH
Confidence 567888888888888888877666532222110 0 0 00 00000 0 11113444444445
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHH--HhCCCccHHHHHHHHHHHHHHHHhccccc
Q 015473 289 AQGILSCFFLKYADAILKKYSSTVATIFTGIASAV--LFGHTLTMNFLLGISIVFISMHQFFSSLS 352 (406)
Q Consensus 289 igg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~l--lfge~~t~~~~lG~~LVi~gv~ly~~~~~ 352 (406)
+.-.+-.++++..|.....+..+...++..++++. +|||++|+.+++|+++|+.|+++-+...+
T Consensus 60 la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 60 LSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 55566667788877666655555555667677774 89999999999999999999999876433
No 50
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.93 E-value=0.00057 Score=66.75 Aligned_cols=65 Identities=22% Similarity=0.249 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCC
Q 015473 129 YAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRS 193 (406)
Q Consensus 129 y~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~ 193 (406)
-.++..++++++++.++...+++..+.|++.+++++++++|+++..||++.++.++|++......
T Consensus 219 t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 219 TALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 45777899999999999999999999999999999999999999999999999999998875543
No 51
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.86 E-value=0.00045 Score=67.55 Aligned_cols=68 Identities=16% Similarity=0.131 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccC
Q 015473 125 PAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLR 192 (406)
Q Consensus 125 pAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~ 192 (406)
-++.-.+...+++++++++++...+++..+.|++.+++++++++|+++..||++.++.+.|+.+....
T Consensus 221 ~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~ 288 (295)
T PRK11689 221 AAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA 288 (295)
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence 33445678899999999999999999999999999999999999999999999999999999887543
No 52
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.86 E-value=0.00056 Score=66.75 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccC
Q 015473 129 YAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLR 192 (406)
Q Consensus 129 y~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~ 192 (406)
..+.+.+++++++++++++..++..+.|+++++++++++||+++..||++.++.++|+.+.+.+
T Consensus 223 s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~ 286 (292)
T PRK11272 223 SIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG 286 (292)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 4477889999999999999999999999999999999999999999999999999999887553
No 53
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.81 E-value=0.00062 Score=66.00 Aligned_cols=129 Identities=11% Similarity=-0.026 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCh--HHHHHH--HH
Q 015473 210 YIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHS--KATMLL--IF 285 (406)
Q Consensus 210 ~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~--~~~~l~--i~ 285 (406)
+++.++++++.+...+..|+..+++ +.. + .+....+.++..+.... ...+.. +...+ ++.+.. .+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~---~~~-~-~~~~~~~~~~l~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~ 71 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKE---PDF-L-WWALLAHSVLLTPYGLW--YLAQVG----WSRLPATFWLLLAISAV 71 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCch---hHH-H-HHHHHHHHHHHHHHHHH--hcccCC----CCCcchhhHHHHHHHHH
Confidence 4677889999999999998776652 222 1 22233333333332221 000111 11111 121211 12
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015473 286 NNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS 349 (406)
Q Consensus 286 ~~aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~ 349 (406)
..+.+..+....+++.+........++.++++.+++++++||+++..+++|.++++.|+.+-..
T Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 72 ANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3344455666777888888888888899999999999999999999999999999999987554
No 54
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.81 E-value=0.00056 Score=58.85 Aligned_cols=72 Identities=14% Similarity=0.156 Sum_probs=63.0
Q ss_pred HHHHH-HHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHH--HhCCCCCHHHHHHHHHHHHHHhhhccCC
Q 015473 122 LAVPA-FLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKI--IMRRRFSIIQWEALALLLIGISVNQLRS 193 (406)
Q Consensus 122 ~~vpA-lly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l--~Lkerls~~qwlal~ll~~GV~lv~~~~ 193 (406)
+...+ .+|.+...++..+++.+|++.+.-+.+..+..+++.++. ++||++|++||+++++.++|+.++..++
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 34444 578999999999999999999999999888888888885 8999999999999999999999986543
No 55
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.73 E-value=0.0016 Score=64.04 Aligned_cols=139 Identities=19% Similarity=0.323 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHH--HhhcccCCCCCcchhHHHH-HhhhhhH
Q 015473 44 FLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFF--QARHQKVGEKPLLSISTFI-QAARNNV 120 (406)
Q Consensus 44 ll~~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~--~~~~~~~~~~~~l~~~~~~-~~~r~~~ 120 (406)
++++.+.++.+.+...++....+ ++.++.+.++..+++.+++....... .+... + ...+. +++.-..
T Consensus 157 ~ll~~sl~~~a~~~~~qe~~~~~--~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~-----~---~~~f~~~~p~~~~ 226 (303)
T PF08449_consen 157 ILLLLSLLLDAFTGVYQEKLFKK--YGKSPWELMFYTNLFSLPFLLILLFLLPTGEFR-----S---AIRFISAHPSVLL 226 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhh-----H---HHHHHHHhHHHHH
Confidence 34445556677777666544322 23457889999999999988877665 33211 1 11222 2222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccC
Q 015473 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLR 192 (406)
Q Consensus 121 ~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~ 192 (406)
....-++..+......+.-.+..++.+..++..++-+.+.++|.+++++++++.||.|+++.+.|..+-...
T Consensus 227 ~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~ 298 (303)
T PF08449_consen 227 YLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYA 298 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHh
Confidence 445555666666666677889999999999999999999999999999999999999999999999886543
No 56
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.64 E-value=0.00048 Score=58.45 Aligned_cols=73 Identities=11% Similarity=0.166 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHh-hhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCC
Q 015473 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLS-NLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRS 193 (406)
Q Consensus 121 ~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~-~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~ 193 (406)
...+...+|.++..+...+++++|.+.+..+. ..-.+.+++.+++++||+++..|++++.+.++|++.+...+
T Consensus 32 ~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 32 GFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 34566678999999999999999999887775 69999999999999999999999999999999999886543
No 57
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.62 E-value=0.003 Score=61.86 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccC
Q 015473 130 AINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLR 192 (406)
Q Consensus 130 ~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~ 192 (406)
.+...+++.+++++++.+...+..+.|++.+++++++++|+++..||++.++.++|+.+...+
T Consensus 226 ~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~ 288 (299)
T PRK11453 226 IVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG 288 (299)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence 467778899999999999999999999999999999999999999999999999999887543
No 58
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.59 E-value=0.0008 Score=56.26 Aligned_cols=72 Identities=15% Similarity=0.175 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHH-hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccC
Q 015473 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLR 192 (406)
Q Consensus 121 ~~~vpAlly~~~n~L~f~al~~l~~~t~~vl-~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~ 192 (406)
.....-..|.++..+...+++.+|.+.+..+ .....+.+++.+++++||++++.|++++.+.++|++.+...
T Consensus 32 ~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 32 PSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4455567899999999999999999988777 45899999999999999999999999999999999998653
No 59
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.58 E-value=0.00075 Score=55.94 Aligned_cols=71 Identities=14% Similarity=0.035 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHhh-hHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 015473 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSN-LKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQL 191 (406)
Q Consensus 121 ~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~-~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~ 191 (406)
...+....|.++..+.-.+++.+|.+++-.+.. .-.+.+++.+++++||++++.|++++.+..+|++.+..
T Consensus 31 ~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 31 PSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 445557789999999999999999888766654 99999999999999999999999999999999998743
No 60
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.57 E-value=0.0012 Score=64.46 Aligned_cols=132 Identities=16% Similarity=0.183 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhh
Q 015473 38 QRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAAR 117 (406)
Q Consensus 38 ~~~l~~ll~~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r 117 (406)
.+++...++ +.+.|+......|... ++|.+.+|.+-.-=++.+..+.....+ .+|.. .+
T Consensus 151 ~~Gi~~~l~--sg~~y~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~--------~~ 209 (290)
T TIGR00776 151 KKGILLLLM--STIGYLVYVVVAKAFG------VDGLSVLLPQAIGMVIGGIIFNLGHIL-----AKPLK--------KY 209 (290)
T ss_pred hhHHHHHHH--HHHHHHHHHHHHHHcC------CCcceehhHHHHHHHHHHHHHHHHHhc-----ccchH--------HH
Confidence 345534433 3555777777776542 445444444444333333333222211 02211 12
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh-ccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHH----HHHHHHHHHHhhhc
Q 015473 118 NNVLLAVPAFLYAINNYLKFIMQL-YFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQW----EALALLLIGISVNQ 190 (406)
Q Consensus 118 ~~~~~~vpAlly~~~n~L~f~al~-~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qw----lal~ll~~GV~lv~ 190 (406)
..+...+.+++..+++.+++.+++ +++++++.++.+..|+..++++++++||+.+++|+ ++.++...|+.++.
T Consensus 210 ~~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 210 AILLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 333455577778899999999999 99999999999999999999999999999999999 99999999998864
No 61
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.56 E-value=0.00089 Score=55.26 Aligned_cols=72 Identities=17% Similarity=0.210 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccChHHH-HHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 015473 120 VLLAVPAFLYAINNYLKFIMQLYFNPATV-KMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQL 191 (406)
Q Consensus 120 ~~~~vpAlly~~~n~L~f~al~~l~~~t~-~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~ 191 (406)
+...+..+.|.++..+.-.+++++|.+++ .+-.-.-.+-+++.+++++||+++..|++++.++.+|++.+..
T Consensus 31 ~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 31 WPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 35666778899999999999999998877 4556688999999999999999999999999999999988754
No 62
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.49 E-value=0.0011 Score=55.34 Aligned_cols=71 Identities=13% Similarity=0.066 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccChHHHHHH-hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 015473 120 VLLAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQ 190 (406)
Q Consensus 120 ~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl-~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~ 190 (406)
+...+....|.++..+.-.+++++|.+++-.+ ...-.+.+++.+++++||++++.|++++.+.++|++...
T Consensus 36 ~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 36 IYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 34556677899999999999999998887555 558899999999999999999999999999999998763
No 63
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=97.48 E-value=0.0039 Score=60.93 Aligned_cols=64 Identities=5% Similarity=0.049 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 015473 128 LYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQL 191 (406)
Q Consensus 128 ly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~ 191 (406)
.-.+...+++.+++++|++..+.+....|++..++++++++|+++..|+.+.++.++|+.++..
T Consensus 222 ~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~ 285 (296)
T PRK15430 222 VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM 285 (296)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4457888999999999999999999999999999999999999999999999999888877643
No 64
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.25 E-value=0.011 Score=56.37 Aligned_cols=132 Identities=9% Similarity=0.049 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cccccCChH-HHHHHH--
Q 015473 209 AYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDN-LDILQGHSK-ATMLLI-- 284 (406)
Q Consensus 209 G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~-~~~~~g~~~-~~~l~i-- 284 (406)
|.++++++++++|..++..|.+ .+ .++.....+=.+++.++.++.... ...... ...++..+. ..+..+
T Consensus 3 g~~~~i~a~~~wg~~~~~~k~~-~~---~~~~~i~~~R~~~a~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (256)
T TIGR00688 3 GIIVSLLASFLFGYMYYYSKLL-KP---LPATDILGHRMIWSFPFMLLSVTL---FRQWAALIERLKRIQKRPLILSLLL 75 (256)
T ss_pred cHHHHHHHHHHHHHHHHHHHHh-cc---CCHHHHHHHHHHHHHHHHHHHHHH---HcchHHHHHHHhCcccchHHHHHHH
Confidence 6678889999999999988863 32 455544444344554443332211 111000 000111111 111111
Q ss_pred --HHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHh
Q 015473 285 --FNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQF 347 (406)
Q Consensus 285 --~~~aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly 347 (406)
+..++...+....++|.+........++.|+++.+++.++++|+++..+++|..+.+.|+.+-
T Consensus 76 ~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li 140 (256)
T TIGR00688 76 CGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISN 140 (256)
T ss_pred HHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 123334455566778877777777788999999999999999999999999999999998754
No 65
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.14 E-value=0.004 Score=52.10 Aligned_cols=61 Identities=8% Similarity=0.093 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhc
Q 015473 288 AAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFF 348 (406)
Q Consensus 288 aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~ 348 (406)
++...+...++|..|-...-...+++.+++.++|+++|||++|..+++|.++++.|+.+-.
T Consensus 48 ~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 48 GLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3344566677787765555555558899999999999999999999999999999987643
No 66
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.11 E-value=0.0059 Score=51.84 Aligned_cols=66 Identities=15% Similarity=0.211 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHhh-hHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015473 285 FNNAAQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS 350 (406)
Q Consensus 285 ~~~aigg~~v~~~~ky~~-~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~ 350 (406)
+.-++.-.+.+.++|+.+ ++.-...+....+.+.++|+++|||++|+..++|+.+++.|+..-+..
T Consensus 38 ~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 38 VMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 333444456667777765 333344456788999999999999999999999999999999877553
No 67
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=97.07 E-value=0.0041 Score=52.08 Aligned_cols=70 Identities=17% Similarity=0.226 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccChHHHHHH-hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhh
Q 015473 120 VLLAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVN 189 (406)
Q Consensus 120 ~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl-~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv 189 (406)
++|.+|=++|.....++|+.+...|.+...-+ +++.-++|++.++++.+|..+++.|+++.+..+|+.+.
T Consensus 42 ~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 42 PKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 47999999999999999999999999888766 69999999999999999999999999999999998753
No 68
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.98 E-value=0.0098 Score=49.72 Aligned_cols=63 Identities=19% Similarity=0.196 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhh-hHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015473 288 AAQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS 350 (406)
Q Consensus 288 aigg~~v~~~~ky~~-~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~ 350 (406)
++.-.+.+.++|+.+ ++.-...+..+.+.++++|+++|||++|+..++|+++++.|+.+-+..
T Consensus 41 ~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 41 CASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 344445567777755 233334455788999999999999999999999999999999987653
No 69
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=96.89 E-value=0.013 Score=48.74 Aligned_cols=60 Identities=25% Similarity=0.296 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015473 289 AQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS 349 (406)
Q Consensus 289 igg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~ 349 (406)
.+..+..+..++.+. .......+.++++.++|.++|+|+++...++|..+++.|+.+-..
T Consensus 47 ~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~ 106 (113)
T PF13536_consen 47 VAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAW 106 (113)
T ss_pred HHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 445566677788885 555777789999999999999999999999999999999987655
No 70
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.84 E-value=0.62 Score=46.69 Aligned_cols=223 Identities=13% Similarity=0.080 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccChHHHHHH-hhhHHHHHHHHHHHHhCCCC---CH----HHHHHHHHHHHHHhhhcc--
Q 015473 122 LAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVLVIAVLLKIIMRRRF---SI----IQWEALALLLIGISVNQL-- 191 (406)
Q Consensus 122 ~~vpAlly~~~n~L~f~al~~l~~~t~~vl-~~~k~l~talls~l~Lkerl---s~----~qwlal~ll~~GV~lv~~-- 191 (406)
-.+-+++-.+.|..++.+++++..+..+-+ .-+..+..+++..++++|-- +. .-.+++++..+|+++...
T Consensus 76 ~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag 155 (345)
T PRK13499 76 VFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAG 155 (345)
T ss_pred HHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 344557888999999999999988877655 55888999999999988543 33 355677888889988876
Q ss_pred --CCCCCCCCCCCCccchHHHHHHHHHHHHHHHHH-------HHHHHHhhhcCCcchHHHHHHHH---HHHHHHHHHHHH
Q 015473 192 --RSLPEGSTAMGLPVAMGAYIYTLIFITVPSMAS-------VFNEYALKSQYDTSIYLQNLFLY---GYGAIFNFLGIL 259 (406)
Q Consensus 192 --~~~~~~~~~~~~~~~~~G~ll~L~a~~~sala~-------V~~ekllk~~~~~s~~~~~~~l~---~~g~l~~l~~~~ 259 (406)
++..++.++.+.....-|+++.+++.+.+++.+ +..|...+.. ..+++....+.. ..+.+.+++...
T Consensus 156 ~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g-~~~~~~~lp~~~~~~~G~~~~n~~~~~ 234 (345)
T PRK13499 156 QLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALG-VDPLYAALPSYVVIMGGGAITNLGFCF 234 (345)
T ss_pred hhcccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcC-CCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433211100001111237778888888887766 3333322221 223333333322 333333332211
Q ss_pred HHHHhcCCCcc--ccccCChHHHHHHHHHHHHHHHHHH---HHHHHhhhHH---HH-----HHhhHHHHHHHHHHHHHhC
Q 015473 260 VTAIFKGPDNL--DILQGHSKATMLLIFNNAAQGILSC---FFLKYADAIL---KK-----YSSTVATIFTGIASAVLFG 326 (406)
Q Consensus 260 ~~~~~~~~~~~--~~~~g~~~~~~l~i~~~aigg~~v~---~~~ky~~~i~---k~-----~a~~~~iv~t~lls~llfg 326 (406)
.. ..+++... ..+.......+-..+..+++|.+-. +.+-.+.+.. .. +...+.++++.+.|+ +++
T Consensus 235 ~~-~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lk 312 (345)
T PRK13499 235 IR-LAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLK 312 (345)
T ss_pred HH-HhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhh
Confidence 10 01222110 0111110011212222233333111 1111111100 11 222456788999998 488
Q ss_pred CCcc------HHHHHHHHHHHHHHHHh
Q 015473 327 HTLT------MNFLLGISIVFISMHQF 347 (406)
Q Consensus 327 e~~t------~~~~lG~~LVi~gv~ly 347 (406)
|.=+ ...++|.++++.|..+-
T Consensus 313 E~K~a~~k~~~~l~~G~vliI~g~~li 339 (345)
T PRK13499 313 EWKGASRRPVRVLSLGCVVIILAANIV 339 (345)
T ss_pred hccCCCccchhHHHHHHHHHHHHHHHH
Confidence 8766 67889999999888654
No 71
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.82 E-value=0.021 Score=55.07 Aligned_cols=120 Identities=14% Similarity=0.148 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhh
Q 015473 38 QRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAAR 117 (406)
Q Consensus 38 ~~~l~~ll~~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r 117 (406)
.+.+..+ +.+.+.|.....+.|+.. .++.+ .++-+.+.++++...+..-.+ ++... |
T Consensus 137 ~kgi~~L--l~stigy~~Y~~~~~~~~------~~~~~-~~lPqaiGm~i~a~i~~~~~~------~~~~~--------k 193 (269)
T PF06800_consen 137 KKGILAL--LISTIGYWIYSVIPKAFH------VSGWS-AFLPQAIGMLIGAFIFNLFSK------KPFFE--------K 193 (269)
T ss_pred hhHHHHH--HHHHHHHHHHHHHHHhcC------CChhH-hHHHHHHHHHHHHHHHhhccc------ccccc--------c
Confidence 3444333 333555666666766642 33444 355667777777555443221 11111 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 015473 118 NNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALA 180 (406)
Q Consensus 118 ~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ 180 (406)
..++-.++++++.+.|.+.+++.+..-.++...++|+.++..++-+.++|||+=+++++...+
T Consensus 194 ~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~ 256 (269)
T PF06800_consen 194 KSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTL 256 (269)
T ss_pred chHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHH
Confidence 344678899999999999999999999999999999999999999999999999999886554
No 72
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.82 E-value=0.0025 Score=62.90 Aligned_cols=150 Identities=15% Similarity=0.156 Sum_probs=101.1
Q ss_pred cccchhhHHHHHHHHHHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHH-HHHHHHhhcccCCCCCcchhH
Q 015473 32 TRVSSKQRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAI-VMLFFQARHQKVGEKPLLSIS 110 (406)
Q Consensus 32 ~~~~~k~~~l~~ll~~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~-~ll~~~~~~~~~~~~~~l~~~ 110 (406)
.+.+-.+.+. +......+.++.|.++.|....+.++..++........-+.+++.+ ++.....+...... ....+
T Consensus 156 ~e~~fn~~G~--i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~--~~~~~ 231 (316)
T KOG1441|consen 156 TELSFNLFGF--ISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGF--LTAPW 231 (316)
T ss_pred ccccccHHHH--HHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeee--ecccc
Confidence 3444555555 2334455668888888776554334556676655444444444444 44333222111000 00001
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 015473 111 TFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQ 190 (406)
Q Consensus 111 ~~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~ 190 (406)
.+ +...+..-++++...|...|..+.+++|-|+++.+..|-..+...+++++++++++.|.++.++..+|+.+-.
T Consensus 232 ~~-----~~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 232 FV-----TFLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYS 306 (316)
T ss_pred ch-----hhHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHH
Confidence 11 1334555558999999999999999999999999999999999999999999999999999999999998853
No 73
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.77 E-value=0.0057 Score=49.46 Aligned_cols=61 Identities=10% Similarity=0.242 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccChHHHHHH-hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 015473 122 LAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVLVIAVLLKIIMRRRFSIIQWEALALL 182 (406)
Q Consensus 122 ~~vpAlly~~~n~L~f~al~~l~~~t~~vl-~~~k~l~talls~l~Lkerls~~qwlal~ll 182 (406)
....-..|.++..+.-.+++++|.+++--+ .....+.+++.+.+++||++|..||.++.+.
T Consensus 32 ~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 32 TILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp --HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 344445899999999999999999988655 5699999999999999999999999998763
No 74
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=0.0078 Score=58.80 Aligned_cols=67 Identities=13% Similarity=0.288 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccC
Q 015473 126 AFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLR 192 (406)
Q Consensus 126 Ally~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~ 192 (406)
-+.+.+.+.+.|.|+.+-|++...-+..+.++..++++..+||||++..-.++.++.++|-.++...
T Consensus 71 ~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~h 137 (335)
T KOG2922|consen 71 MLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIH 137 (335)
T ss_pred HHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEe
Confidence 3567789999999999999999999999999999999999999999999999999999998766443
No 75
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=96.71 E-value=0.077 Score=50.46 Aligned_cols=72 Identities=22% Similarity=0.285 Sum_probs=63.6
Q ss_pred HHHHHHHHHH-HHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccC
Q 015473 121 LLAVPAFLYA-INNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLR 192 (406)
Q Consensus 121 ~~~vpAlly~-~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~ 192 (406)
.....+++.. +...+.+.+++..++.....+..+.|++.+++++++++|+++..|+++..+.+.|+.+...+
T Consensus 216 ~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 216 LLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 4555555544 68899999999999999999999999999999999999999999999999999999888544
No 76
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.68 E-value=0.1 Score=43.55 Aligned_cols=62 Identities=18% Similarity=0.095 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHhh-hHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHh
Q 015473 286 NNAAQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQF 347 (406)
Q Consensus 286 ~~aigg~~v~~~~ky~~-~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly 347 (406)
.-++.-.+.+.++|+.+ ++.-...+....+.+++.|+++|||++|+..++|+++++.|+..-
T Consensus 44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 33445566777788765 333355566788999999999999999999999999999999764
No 77
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.44 E-value=0.12 Score=42.68 Aligned_cols=62 Identities=18% Similarity=0.255 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHhh-hHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015473 288 AAQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS 349 (406)
Q Consensus 288 aigg~~v~~~~ky~~-~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~ 349 (406)
.+.-.+.+..+|+.+ .+.-...+...++.+.+.|+++|||++|...++|..+++.|+..-+.
T Consensus 41 ~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 41 GLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 344456677788866 33335666778899999999999999999999999999999987554
No 78
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.42 E-value=0.038 Score=45.82 Aligned_cols=61 Identities=13% Similarity=0.160 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhh-hHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhc
Q 015473 288 AAQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFF 348 (406)
Q Consensus 288 aigg~~v~~~~ky~~-~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~ 348 (406)
++.-.+.+.++|+.+ ++.-...+...++.+++.|+++|||++|+..++|+.+++.|+..-+
T Consensus 40 ~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 40 IVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 444456667777765 3444566667889999999999999999999999999999998754
No 79
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=96.29 E-value=0.18 Score=50.37 Aligned_cols=63 Identities=14% Similarity=0.182 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015473 288 AAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS 350 (406)
Q Consensus 288 aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~ 350 (406)
..+..++...++|.+-.........+++++.++|++++++++++.+++|+.+.++|+.+-...
T Consensus 90 v~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~s 152 (334)
T PF06027_consen 90 VEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVS 152 (334)
T ss_pred HHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeee
Confidence 346677778888888777778888999999999999999999999999999999998866553
No 80
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.27 E-value=0.014 Score=55.25 Aligned_cols=59 Identities=20% Similarity=0.258 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhh
Q 015473 131 INNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVN 189 (406)
Q Consensus 131 ~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv 189 (406)
+-..|-.++++.+|..+|.++.++.|.+-++..+++|+|++|..||+++.+..++++=.
T Consensus 222 lPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~ 280 (292)
T COG5006 222 LPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS 280 (292)
T ss_pred cchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence 55677889999999999999999999999999999999999999999999888877533
No 81
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.27 E-value=0.055 Score=53.27 Aligned_cols=116 Identities=10% Similarity=0.084 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHHHHH
Q 015473 207 MGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFN 286 (406)
Q Consensus 207 ~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~l~i~~ 286 (406)
..|.++.+.++++.+.+..++||-.++.++.+.... . -.. .. ++ ++..|.-++.
T Consensus 6 ~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~--~-----~~~---~~-----l~-----------~~~W~~G~~~ 59 (300)
T PF05653_consen 6 YIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG--S-----GGR---SY-----LR-----------RPLWWIGLLL 59 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc--c-----hhh---HH-----Hh-----------hHHHHHHHHH
Confidence 468899999999999999988887665312111100 0 000 00 00 1122222334
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhc
Q 015473 287 NAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFF 348 (406)
Q Consensus 287 ~aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~ 348 (406)
.++|...-...+.+++..+..+....+++++.+++..+++|+++...++|.++++.|..+-.
T Consensus 60 ~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 60 MVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred HhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 45565555567788998888888999999999999999999999999999999999986543
No 82
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=95.95 E-value=0.081 Score=49.33 Aligned_cols=67 Identities=9% Similarity=0.073 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Q 015473 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGIS 187 (406)
Q Consensus 121 ~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~ 187 (406)
......++.+++..+..+.+++.|+.+......+.++++++++.++++++++..||+++.+.+.|+.
T Consensus 154 ~~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~ 220 (222)
T TIGR00803 154 AVWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATF 220 (222)
T ss_pred HHHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeE
Confidence 4556667788888999999999999999999999999999999999999999999999999998864
No 83
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=95.74 E-value=0.81 Score=39.73 Aligned_cols=130 Identities=15% Similarity=0.170 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHHHHHHHHH
Q 015473 211 IYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQ 290 (406)
Q Consensus 211 ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~l~i~~~aig 290 (406)
++.+.+..+-++.+..+-++.+.. .+++.-.+.-...|.+........ .+++ ......+.+||.|+--+..++.
T Consensus 4 lla~~aG~~i~~q~~~N~~L~~~~--gs~~~as~i~~~~G~i~~~i~~~~---~~~~-~~~~~~~~p~w~~lGG~lG~~~ 77 (138)
T PF04657_consen 4 LLALLAGALIALQAAFNGQLGKAL--GSPLVASFISFGVGFILLLIILLI---TGRP-SLASLSSVPWWAYLGGLLGVFF 77 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHHHHHHHH---hccc-ccchhccCChHHhccHHHHHHH
Confidence 455666667778888888877663 356656666566666655544432 2332 2222344566666543333333
Q ss_pred HHHHHHHHHHhhhHHH-HHHhhHHHHHHHHHHHH-Hh---CCCccHHHHHHHHHHHHHHHH
Q 015473 291 GILSCFFLKYADAILK-KYSSTVATIFTGIASAV-LF---GHTLTMNFLLGISIVFISMHQ 346 (406)
Q Consensus 291 g~~v~~~~ky~~~i~k-~~a~~~~iv~t~lls~l-lf---ge~~t~~~~lG~~LVi~gv~l 346 (406)
-....+.+...+.... ......+++.+.++..+ +| .++++...++|.++++.|+++
T Consensus 78 V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 78 VLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 3334444444443322 33334456677777765 44 378999999999999999864
No 84
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=95.40 E-value=0.21 Score=48.68 Aligned_cols=129 Identities=18% Similarity=0.235 Sum_probs=94.8
Q ss_pred HHHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHH-hhhhhHHHHH
Q 015473 46 VVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQ-AARNNVLLAV 124 (406)
Q Consensus 46 ~~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~-~~r~~~~~~v 124 (406)
+..+.+.-..|+-+-+ ++..++...++-.++...+.+...+..++.. .+.+ .|.. ++.-.+-+.+
T Consensus 181 L~fDgfTn~tQd~lf~------~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~-----~~av---~F~~~hp~~~~Di~l 246 (327)
T KOG1581|consen 181 LLFDGFTNATQDSLFK------KYKVSSLHMMFGVNLFSAILNGTYLILQGHL-----LPAV---SFIKEHPDVAFDILL 246 (327)
T ss_pred HHHHhhHHhHHHHHhc------cCCccHhHHHHHHHHHHHHHHHHhhhcCCCC-----chHH---HHHHcChhHHHHHHH
Confidence 3334445555665543 3456788889999999998887776554431 2211 1221 1111123666
Q ss_pred HHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhh
Q 015473 125 PAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISV 188 (406)
Q Consensus 125 pAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~l 188 (406)
-+.+.++..+..|+-++...+-++..+.-+.=++..++|.+..+++++..||.++.+.|.|+..
T Consensus 247 ~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 247 YSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred HHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 7777888888889999999999999999999999999999999999999999999999988765
No 85
>PRK13499 rhamnose-proton symporter; Provisional
Probab=95.37 E-value=0.25 Score=49.48 Aligned_cols=137 Identities=15% Similarity=0.091 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHHH--
Q 015473 207 MGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLI-- 284 (406)
Q Consensus 207 ~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~l~i-- 284 (406)
..|++..+++++++|--++-++| .|+- .| +++|. ..+....++....-..+..+.-.+..+..+...+...
T Consensus 6 ~~G~~~~~i~~~~~GS~~~p~K~-~k~w----~w-E~~W~-v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l 78 (345)
T PRK13499 6 ILGIIWHLIGGASSGSFYAPFKK-VKKW----SW-ETMWS-VGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFL 78 (345)
T ss_pred HHHHHHHHHHHHHhhcccccccc-cCCC----ch-hHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHH
Confidence 46888889999998877766666 4542 12 22244 3333222111110011111111112222333333222
Q ss_pred --HHHHHHHHHHHHHHHHhh-hHHHHHHhhHHHHHHHHHHHHHhCCCc-------cHHHHHHHHHHHHHHHHhccc
Q 015473 285 --FNNAAQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAVLFGHTL-------TMNFLLGISIVFISMHQFFSS 350 (406)
Q Consensus 285 --~~~aigg~~v~~~~ky~~-~i~k~~a~~~~iv~t~lls~llfge~~-------t~~~~lG~~LVi~gv~ly~~~ 350 (406)
+.-++|++.....+||.+ +..-..++.++.+++++++.+++||.. ....++|.++++.|+.+....
T Consensus 79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A 154 (345)
T PRK13499 79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA 154 (345)
T ss_pred HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 344678888889999987 444456677888999999999999754 235788999999999987763
No 86
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=95.33 E-value=0.23 Score=40.02 Aligned_cols=52 Identities=15% Similarity=0.230 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhhhHHH-HHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Q 015473 289 AQGILSCFFLKYADAILK-KYSSTVATIFTGIASAVLFGHTLTMNFLLGISIV 340 (406)
Q Consensus 289 igg~~v~~~~ky~~~i~k-~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LV 340 (406)
+.-.+.+.++|+.|-.+. ...+....+.+.++|.++|||++|..+++|+.+|
T Consensus 41 ~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 41 LSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 334566677777663332 4455678899999999999999999999999876
No 87
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=95.20 E-value=0.93 Score=44.01 Aligned_cols=130 Identities=18% Similarity=0.226 Sum_probs=89.5
Q ss_pred HHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHHHHHH
Q 015473 47 VGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPA 126 (406)
Q Consensus 47 ~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~vpA 126 (406)
++.++.|+..+.+.|..+.| +.+-..+.-+.-+.+|+.++........ .... +..+....+..-+
T Consensus 154 l~la~sf~~Ygl~RK~~~v~------a~~g~~lE~l~l~p~al~yl~~l~~~~~-----~~~~----~~~~~~~LLv~aG 218 (293)
T COG2962 154 LALALSFGLYGLLRKKLKVD------ALTGLTLETLLLLPVALIYLLFLADSGQ-----FLQQ----NANSLWLLLVLAG 218 (293)
T ss_pred HHHHHHHHHHHHHHHhcCCc------hHHhHHHHHHHHhHHHHHHHHHHhcCch-----hhhc----CCchHHHHHHHhh
Confidence 34466677777777776543 4344444444555566665554332110 0000 0112233444555
Q ss_pred HHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 015473 127 FLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQL 191 (406)
Q Consensus 127 lly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~ 191 (406)
..-++--.++-.|-+.+|.++.-++.+..|...-+++++++||+++..|+.+-++.-+|+++...
T Consensus 219 ~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~ 283 (293)
T COG2962 219 LVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSI 283 (293)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 66667778888899999999999999999999999999999999999999999999999888743
No 88
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=95.07 E-value=0.16 Score=47.79 Aligned_cols=68 Identities=15% Similarity=0.288 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhh
Q 015473 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISV 188 (406)
Q Consensus 121 ~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~l 188 (406)
-....|+..++...+.|....+..|-+-+++..+.-+||.+.|+++++..++.+||++-.+.|.|...
T Consensus 243 ~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 243 DLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA 310 (337)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence 45667777888899999999999999999999999999999999999999999999999999988765
No 89
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=93.96 E-value=0.14 Score=42.91 Aligned_cols=64 Identities=17% Similarity=0.298 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHhh-hHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHH
Q 015473 283 LIFNNAAQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQ 346 (406)
Q Consensus 283 ~i~~~aigg~~v~~~~ky~~-~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~l 346 (406)
..+.+-.|.+.-.+.+..+| +.....+++++-++|.+.++++..|..+...++|+++|+.|+.+
T Consensus 47 pf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 47 PFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 33444455555556667677 44445567899999999999999888999999999999999865
No 90
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=93.70 E-value=0.47 Score=45.29 Aligned_cols=66 Identities=23% Similarity=0.206 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcccccc
Q 015473 288 AAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSK 353 (406)
Q Consensus 288 aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~~~~ 353 (406)
++...+....+++.|+.+-.......+++|+++++++++.+++..+|++..+...|+.+.......
T Consensus 28 ~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 28 AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 455666777889999888888888999999999999999999999999999999999987765444
No 91
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=93.18 E-value=3.7 Score=35.57 Aligned_cols=128 Identities=17% Similarity=0.245 Sum_probs=76.9
Q ss_pred HHHHHHHHHhhHhHh-hhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHHH
Q 015473 45 LVVGDCMLVGLQPIL-VYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLA 123 (406)
Q Consensus 45 l~~~~~~~~~~~~~l-~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~ 123 (406)
+.+..-..-+.|..+ .++++.-|+ |....++.-....++...+....++.... . . .+.++.+.
T Consensus 5 la~~aG~~i~~q~~~N~~L~~~~gs----~~~as~i~~~~G~i~~~i~~~~~~~~~~~---~-~--------~~~p~w~~ 68 (138)
T PF04657_consen 5 LALLAGALIALQAAFNGQLGKALGS----PLVASFISFGVGFILLLIILLITGRPSLA---S-L--------SSVPWWAY 68 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCc----cHHHHHHHHHHHHHHHHHHHHHhcccccc---h-h--------ccCChHHh
Confidence 334444445566555 445443332 44445555666666665554443331110 0 0 12233455
Q ss_pred HHHHHHHHHHHHHHHHHhccChHHHHHHhhh-HHHHHHHHHHH----HhCCCCCHHHHHHHHHHHHHHhh
Q 015473 124 VPAFLYAINNYLKFIMQLYFNPATVKMLSNL-KVLVIAVLLKI----IMRRRFSIIQWEALALLLIGISV 188 (406)
Q Consensus 124 vpAlly~~~n~L~f~al~~l~~~t~~vl~~~-k~l~talls~l----~Lkerls~~qwlal~ll~~GV~l 188 (406)
..+++-...-.+..+....+.++...++.-+ +.+...++-.+ .-|+++++.|.+++++..+|+.+
T Consensus 69 lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 69 LGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred ccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 5667777777777888899988888766554 45555555554 57899999999999999999863
No 92
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.16 E-value=5.7 Score=35.03 Aligned_cols=133 Identities=14% Similarity=0.135 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHHHHHHH
Q 015473 209 AYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNA 288 (406)
Q Consensus 209 G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~l~i~~~a 288 (406)
.++..+.+..+..+.+..+-++.+.. .++..-...-+..|+........ +.++..........+||.|.-- .
T Consensus 6 ~ll~~i~aG~~l~~Q~~iN~qL~~~~--~spl~As~isf~vGt~~L~~l~l---~~~~~~~~a~~~~~pwW~~~GG---~ 77 (150)
T COG3238 6 YLLFAILAGALLPLQAAINGRLARYL--GSPLLASLISFLVGTVLLLILLL---IKQGHPGLAAVASAPWWAWIGG---L 77 (150)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHHHHH---HhcCCCchhhccCCchHHHHcc---c
Confidence 34556666677777788888876653 23433333323344443332222 2333322222234466666432 2
Q ss_pred HHHHHHHHHH----HHhhhHHHHHHhhHHHHHHHHHHHHH-hC---CCccHHHHHHHHHHHHHHHHhcc
Q 015473 289 AQGILSCFFL----KYADAILKKYSSTVATIFTGIASAVL-FG---HTLTMNFLLGISIVFISMHQFFS 349 (406)
Q Consensus 289 igg~~v~~~~----ky~~~i~k~~a~~~~iv~t~lls~ll-fg---e~~t~~~~lG~~LVi~gv~ly~~ 349 (406)
+|.+++..-. |.............+++.+.++.-+= || .+++..-++|+++++.|+++...
T Consensus 78 lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~ 146 (150)
T COG3238 78 LGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR 146 (150)
T ss_pred hhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence 2333333222 22223333344445666666666553 33 67999999999999999777654
No 93
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=90.81 E-value=1.6 Score=41.92 Aligned_cols=66 Identities=20% Similarity=0.145 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhh-hHHHHHHhhHHHHHHHHHHHH-HhCCCc-----cHHHHHHHHHHHHHHHHhcccccc
Q 015473 288 AAQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAV-LFGHTL-----TMNFLLGISIVFISMHQFFSSLSK 353 (406)
Q Consensus 288 aigg~~v~~~~ky~~-~i~k~~a~~~~iv~t~lls~l-lfge~~-----t~~~~lG~~LVi~gv~ly~~~~~~ 353 (406)
+.|+++.-.++|..+ ++--....+.+.+.....|-+ +||.++ ++.-.+|+++++.|..+|...+.+
T Consensus 66 ~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~ 138 (254)
T PF07857_consen 66 ATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSE 138 (254)
T ss_pred hcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCC
Confidence 456665556666544 222234444555666666644 676543 456789999999999988764433
No 94
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=89.16 E-value=6.5 Score=39.25 Aligned_cols=138 Identities=14% Similarity=0.136 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHH-
Q 015473 207 MGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFL--YGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLL- 283 (406)
Q Consensus 207 ~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l--~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~l~- 283 (406)
..|+++..++++++|..++=.+|. |+- -| .++|+ .+++.++. |.+. +...-|.-.+.....+..++..
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkv-k~W----sW-Es~Wlv~gi~swli~-P~~~--a~l~ip~~~~i~~~~~~~~l~~~ 76 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKV-KGW----SW-ESYWLVQGIFSWLIV-PWLW--ALLAIPDFFSIYSATPASTLFWT 76 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhc-CCc----cH-HHHHHHHHHHHHHHH-HHHH--HHHhCCcHHHHHHhCChhHHHHH
Confidence 468888888888888767666664 431 12 34443 22333321 2211 1222332112233333222222
Q ss_pred ---HHHHHHHHHHHHHHHHHhh-hHHHHHHhhHHHHHHHHHHHHHhC-------CCccHHHHHHHHHHHHHHHHhccccc
Q 015473 284 ---IFNNAAQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAVLFG-------HTLTMNFLLGISIVFISMHQFFSSLS 352 (406)
Q Consensus 284 ---i~~~aigg~~v~~~~ky~~-~i~k~~a~~~~iv~t~lls~llfg-------e~~t~~~~lG~~LVi~gv~ly~~~~~ 352 (406)
=+.-++||+.-+..+||.+ +.--+.+.-+..++.+++--++.| .+-....++|.++++.|+.+..+...
T Consensus 77 ~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~ 156 (344)
T PF06379_consen 77 FLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGS 156 (344)
T ss_pred HHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHH
Confidence 2345689999999999987 333334444455666666555433 23345789999999999998877543
Q ss_pred c
Q 015473 353 K 353 (406)
Q Consensus 353 ~ 353 (406)
+
T Consensus 157 ~ 157 (344)
T PF06379_consen 157 M 157 (344)
T ss_pred h
Confidence 3
No 95
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.93 E-value=0.27 Score=48.31 Aligned_cols=70 Identities=13% Similarity=0.128 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHh
Q 015473 278 KATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQF 347 (406)
Q Consensus 278 ~~~~l~i~~~aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly 347 (406)
++.|.-++..++|-+.-...+-+++.++..+..+++++.+++++..++.|.+++.-.+|.++.+.|..+-
T Consensus 65 ~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~i 134 (335)
T KOG2922|consen 65 PLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTI 134 (335)
T ss_pred HHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEE
Confidence 3456667788888888888889999999999999999999999999999999999999999999987643
No 96
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=87.07 E-value=4 Score=38.36 Aligned_cols=107 Identities=11% Similarity=0.129 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-Hhhccc--CCCCCcchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHH
Q 015473 73 PISVNFLTEMTKVLFAIVMLFF-QARHQK--VGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVK 149 (406)
Q Consensus 73 ~~~vv~~~E~~kl~i~~~ll~~-~~~~~~--~~~~~~l~~~~~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~ 149 (406)
-...+|..+++.+-+-+.+-+. +..... ..+ ++. -....+.+.+++-++-.++.=|-++-++..+++
T Consensus 185 d~dtmfYnNllslPiL~~~s~~~edws~~n~ann---l~~-------d~l~am~ISgl~svgiSy~saWcvrVtSSTtyS 254 (309)
T COG5070 185 DFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANN---LSV-------DSLMAMFISGLCSVGISYCSAWCVRVTSSTTYS 254 (309)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcC---CCh-------HHHHHHHHHHHHHhhhhhccceeEeehhhhHHH
Confidence 3456789998887766554332 222111 101 110 011246677788888888888899999999999
Q ss_pred HHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhh
Q 015473 150 MLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVN 189 (406)
Q Consensus 150 vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv 189 (406)
++..+.-...++-..+++++..++....+++++++..++-
T Consensus 255 MvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iY 294 (309)
T COG5070 255 MVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIY 294 (309)
T ss_pred HHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998888765543
No 97
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=86.98 E-value=0.33 Score=46.06 Aligned_cols=90 Identities=18% Similarity=0.237 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHH
Q 015473 78 FLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVL 157 (406)
Q Consensus 78 ~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l 157 (406)
++-..+.++++...+-..+. +++. .++.++-.+|++...+.|...+.+-+....+|.-.++|+-.+
T Consensus 182 iLPqAiGMv~~ali~~~~~~-----~~~~---------~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgVi 247 (288)
T COG4975 182 ILPQAIGMVIGALILGFFKM-----EKRF---------NKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVI 247 (288)
T ss_pred hhHHHHHHHHHHHHHhhccc-----ccch---------HHHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheee
Confidence 44455677777665544332 1110 144567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHH
Q 015473 158 VIAVLLKIIMRRRFSIIQWEALAL 181 (406)
Q Consensus 158 ~talls~l~Lkerls~~qwlal~l 181 (406)
...+-..++||||=++++|..+..
T Consensus 248 isTiGGIl~L~ekKtkkEm~~v~i 271 (288)
T COG4975 248 ISTIGGILFLGEKKTKKEMVYVII 271 (288)
T ss_pred eeecceEEEEeccCchhhhhhhhh
Confidence 999999999999999999876643
No 98
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.79 E-value=4.3 Score=39.96 Aligned_cols=115 Identities=10% Similarity=0.086 Sum_probs=80.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCCCCCcchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHH
Q 015473 71 FSPISVNFLTEMTKVLFAIVMLFFQARHQ-KVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVK 149 (406)
Q Consensus 71 ~~~~~vv~~~E~~kl~i~~~ll~~~~~~~-~~~~~~~l~~~~~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~ 149 (406)
++....++..+++.+.......+..+... ...+.+.++ ...-...+.+-.++-.+-|++.++..+..++.++.
T Consensus 185 l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~------~~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~t 258 (314)
T KOG1444|consen 185 LNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWS------DSSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTT 258 (314)
T ss_pred ccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhccccc------chhHHHHHHHHHHHHHHHHHHHHHHHhhcccccee
Confidence 34555677777777777766654443211 000111110 00112345666677889999999999999999999
Q ss_pred HHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 015473 150 MLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQL 191 (406)
Q Consensus 150 vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~ 191 (406)
++.-...+.|.+-..++.+++.++...+++.++++|-++-+.
T Consensus 259 ivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~ 300 (314)
T KOG1444|consen 259 IVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSY 300 (314)
T ss_pred ehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhh
Confidence 999777888888888888999999999999999888776543
No 99
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=85.65 E-value=0.32 Score=46.10 Aligned_cols=125 Identities=11% Similarity=0.011 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHHH----
Q 015473 209 AYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLI---- 284 (406)
Q Consensus 209 G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~l~i---- 284 (406)
++++.|+-++.||.......|. + ..|..|..-+.+.+.++.+...+ +..| .+++..++.-
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~-G----G~p~qQ~lGtT~GALifaiiv~~----~~~p-------~~T~~~~iv~~isG 66 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKF-G----GKPYQQTLGTTLGALIFAIIVFL----FVSP-------ELTLTIFIVGFISG 66 (288)
T ss_pred hHHHHHHHHHHhcccceeeeec-C----CChhHhhhhccHHHHHHHHHHhe----eecC-------ccchhhHHHHHHhh
Confidence 4567777788888766655553 2 34555666666555555544332 2333 1222222221
Q ss_pred HHHHHHHHHHHHHHHHhhh-HHHHHHhhHHHHHHHHHHHHHhCCCccHHHH----HHHHHHHHHHHHhcc
Q 015473 285 FNNAAQGILSCFFLKYADA-ILKKYSSTVATIFTGIASAVLFGHTLTMNFL----LGISIVFISMHQFFS 349 (406)
Q Consensus 285 ~~~aigg~~v~~~~ky~~~-i~k~~a~~~~iv~t~lls~llfge~~t~~~~----lG~~LVi~gv~ly~~ 349 (406)
+.-++|+..---.+++.+. ......+.++.+-+.+++++.|||..+..++ +..++++.|+++..+
T Consensus 67 ~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~ 136 (288)
T COG4975 67 AFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSK 136 (288)
T ss_pred hHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeee
Confidence 2334566555555565442 2334556688999999999999999887654 345566678887655
No 100
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=84.48 E-value=0.54 Score=45.18 Aligned_cols=62 Identities=16% Similarity=0.112 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcccc
Q 015473 290 QGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSL 351 (406)
Q Consensus 290 gg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~~ 351 (406)
|-..+.+.++|.+-.-....+..++++++++++++++|+.|..-.+|..+-+.|+.+-.+|+
T Consensus 110 gvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp 171 (346)
T KOG4510|consen 110 GVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP 171 (346)
T ss_pred HHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence 33445566666432222234447899999999999999999999999999999998888765
No 101
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=83.40 E-value=3 Score=34.43 Aligned_cols=69 Identities=13% Similarity=0.116 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccChHHH-HHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhh
Q 015473 120 VLLAVPAFLYAINNYLKFIMQLYFNPATV-KMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISV 188 (406)
Q Consensus 120 ~~~~vpAlly~~~n~L~f~al~~l~~~t~-~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~l 188 (406)
+.|.+|-+++-....++|.-+++.|.+.+ -+.+++...||+++...+-.|....+-.++..+..+|+.+
T Consensus 53 w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~L 122 (125)
T KOG4831|consen 53 WEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWL 122 (125)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhh
Confidence 57999999999999999999999987766 4667889999999999876666667777787777777754
No 102
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=74.66 E-value=5.6 Score=32.81 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=32.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHH
Q 015473 305 LKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQ 346 (406)
Q Consensus 305 ~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~l 346 (406)
+|..-...++..=+..++++++|+++++++.|.++++++++.
T Consensus 64 LKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 64 LKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 344444455555567788899999999999999999999875
No 103
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=73.12 E-value=65 Score=32.77 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCC
Q 015473 127 FLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRS 193 (406)
Q Consensus 127 lly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~ 193 (406)
+..++..+|+-.|.-.+++-+..+-.+..++..++.-.++-++++|+.+++|.+..++|-+++.+..
T Consensus 326 igtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~ 392 (416)
T KOG2765|consen 326 IGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISS 392 (416)
T ss_pred HHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence 3456889999999999999999999999999999999999999999999999999999998887655
No 104
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.69 E-value=4.2 Score=39.37 Aligned_cols=106 Identities=17% Similarity=0.195 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhH
Q 015473 76 VNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLK 155 (406)
Q Consensus 76 vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k 155 (406)
..+..++..++..++++...+.-++.-..|.+....|+. .+.+-++..+.-|+..++=++.++|-|+++-...|
T Consensus 218 lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~------~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAk 291 (347)
T KOG1442|consen 218 LTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWI------LMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAK 291 (347)
T ss_pred hHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHH------HHHHHHHHHHHhhheeeEEEEecccceeeecHhHH
Confidence 446788888888888877766543332334443334432 56666777777777777888899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Q 015473 156 VLVIAVLLKIIMRRRFSIIQWEALALLLIGIS 187 (406)
Q Consensus 156 ~l~talls~l~Lkerls~~qwlal~ll~~GV~ 187 (406)
-..=.++++.+++|..+...|-+.++...|..
T Consensus 292 a~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~ 323 (347)
T KOG1442|consen 292 AAAQTVLAVAYYSETKSGLWWTSNIVVLVGSL 323 (347)
T ss_pred HHHHHHHHHHHHHHHhhhheeeeeEEEEehhH
Confidence 99999999999999999988887655444443
No 105
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=69.41 E-value=48 Score=32.33 Aligned_cols=110 Identities=15% Similarity=0.166 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhH----HHHHHHHH-HHHHHHHHHHHHhccChHH
Q 015473 73 PISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNV----LLAVPAFL-YAINNYLKFIMQLYFNPAT 147 (406)
Q Consensus 73 ~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~----~~~vpAll-y~~~n~L~f~al~~l~~~t 147 (406)
+.+++|.+..+.+..-+..+...+. ..+.++++. .+++ ...+-++. |..++ .--.-++...+++
T Consensus 220 s~EmvfySy~iG~vflf~~mvlTge--------~f~a~~fca--ehp~~tyGy~~~~s~~gylG~~-~VLalI~~fGA~~ 288 (367)
T KOG1582|consen 220 SSEMVFYSYGIGFVFLFAPMVLTGE--------LFSAWTFCA--EHPVRTYGYAFLFSLAGYLGIV-FVLALIKLFGALI 288 (367)
T ss_pred cceEEEeeecccHHHHHHHHHhccc--------chhhhHHHH--hCcHhHHHHHHHHHHHhHhhHH-HHHHHHHHhchhH
Confidence 3456666666666666555554442 123344442 2222 22223332 22222 1122233356777
Q ss_pred HHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCC
Q 015473 148 VKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRS 193 (406)
Q Consensus 148 ~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~ 193 (406)
+..+....=-.|.++|++++.++++....-+..+.+.|+.+...+.
T Consensus 289 aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 289 AATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 7777777788899999999999999999999999999998876554
No 106
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=61.87 E-value=1.2e+02 Score=29.75 Aligned_cols=60 Identities=23% Similarity=0.199 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhc
Q 015473 289 AQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFF 348 (406)
Q Consensus 289 igg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~ 348 (406)
.|.+++..-+.+..+..-...-...++|+.++|..++++.++..+|+|+..|..|.....
T Consensus 98 ~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg 157 (372)
T KOG3912|consen 98 AGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVG 157 (372)
T ss_pred hhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheee
Confidence 344433333333332222333335578999999999999999999999999999986443
No 107
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=61.66 E-value=22 Score=29.42 Aligned_cols=52 Identities=15% Similarity=0.120 Sum_probs=37.2
Q ss_pred HHHHhccChHHHHHHhhh-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhh
Q 015473 137 FIMQLYFNPATVKMLSNL-KVLVIAVLLKIIMRRRFSIIQWEALALLLIGISV 188 (406)
Q Consensus 137 f~al~~l~~~t~~vl~~~-k~l~talls~l~Lkerls~~qwlal~ll~~GV~l 188 (406)
=+|.+..+++.-.++.-. ....-++++++++||++++.+..|-+++..+|..
T Consensus 53 RiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 53 RIGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred hhhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 445555666655555442 3445578899999999999999999888776643
No 108
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.45 E-value=36 Score=27.82 Aligned_cols=43 Identities=14% Similarity=0.182 Sum_probs=33.3
Q ss_pred HHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhc
Q 015473 306 KKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFF 348 (406)
Q Consensus 306 k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~ 348 (406)
|..-...+..+-...|++.++|++.+.++.|..++.+|++...
T Consensus 72 K~mQEVItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiF 114 (116)
T COG3169 72 KTMQEVITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHhc
Confidence 3333334555556789999999999999999999999987643
No 109
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=59.97 E-value=12 Score=30.98 Aligned_cols=52 Identities=21% Similarity=0.193 Sum_probs=40.8
Q ss_pred HHHHHhh-hHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHh
Q 015473 296 FFLKYAD-AILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQF 347 (406)
Q Consensus 296 ~~~ky~~-~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly 347 (406)
..+.+++ +....+.++++..|+.+.|..+-.|.+....++|+.+++.|+++.
T Consensus 71 ~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 71 LTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 3444444 333356677888999999999888889999999999999999874
No 110
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=59.67 E-value=1.2e+02 Score=30.11 Aligned_cols=73 Identities=22% Similarity=0.388 Sum_probs=62.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhh
Q 015473 117 RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVN 189 (406)
Q Consensus 117 r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv 189 (406)
|.......++.+-+.--..-|.-+..++.-+.++..=-|-+.|.+++..++++++|-.-|+++.+...|+..-
T Consensus 241 rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 241 RVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 3444566666666666666677888899999999999999999999999999999999999999999999886
No 111
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.47 E-value=1.3e+02 Score=26.64 Aligned_cols=73 Identities=14% Similarity=0.110 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccChHHHH-HHhhhHHHHHHHHHHHHh----CCCCCHHHHHHHHHHHHHHhhhcc
Q 015473 119 NVLLAVPAFLYAINNYLKFIMQLYFNPATVK-MLSNLKVLVIAVLLKIIM----RRRFSIIQWEALALLLIGISVNQL 191 (406)
Q Consensus 119 ~~~~~vpAlly~~~n~L~f~al~~l~~~t~~-vl~~~k~l~talls~l~L----kerls~~qwlal~ll~~GV~lv~~ 191 (406)
++...+.+++-++.-...-.....+-+++.+ ++..-+.+.-.++-.+=+ +|+++..+++++++..+|+.+++.
T Consensus 69 pwW~~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~ 146 (150)
T COG3238 69 PWWAWIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR 146 (150)
T ss_pred chHHHHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence 3444555554444444444455556555554 345555566666555544 399999999999999999776643
No 112
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=45.02 E-value=25 Score=26.52 Aligned_cols=20 Identities=15% Similarity=0.087 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 015473 331 MNFLLGISIVFISMHQFFSS 350 (406)
Q Consensus 331 ~~~~lG~~LVi~gv~ly~~~ 350 (406)
-..++++++++.|..+|.-+
T Consensus 4 d~iLi~ICVaii~lIlY~iY 23 (68)
T PF05961_consen 4 DFILIIICVAIIGLILYGIY 23 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34578889999999888765
No 113
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=43.38 E-value=8.6 Score=23.85 Aligned_cols=17 Identities=41% Similarity=0.640 Sum_probs=9.1
Q ss_pred eecccccccccCCccch
Q 015473 7 ECSVCHSKLVSPTTKSI 23 (406)
Q Consensus 7 ~~~~~~~~~~~~~~~~~ 23 (406)
+|++|++++.-..+.+.
T Consensus 1 ~CP~C~s~l~~~~~ev~ 17 (28)
T PF03119_consen 1 TCPVCGSKLVREEGEVD 17 (28)
T ss_dssp B-TTT--BEEE-CCTTC
T ss_pred CcCCCCCEeEcCCCCEe
Confidence 59999999885555443
No 114
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=42.62 E-value=5.3e+02 Score=28.91 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=34.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhh
Q 015473 146 ATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVN 189 (406)
Q Consensus 146 ~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv 189 (406)
+-+.++..+.|+-.|.++...+.+|.+..-+.+.+-.++|.+.+
T Consensus 11 gRa~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 11 GRAVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISI 54 (764)
T ss_pred hHHHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 45567888999999999999888886666677777777787654
No 115
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.12 E-value=2.3e+02 Score=23.30 Aligned_cols=61 Identities=11% Similarity=0.136 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhccChHHHHHHhhh-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhh
Q 015473 129 YAINNYLKFIMQLYFNPATVKMLSNL-KVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVN 189 (406)
Q Consensus 129 y~~~n~L~f~al~~l~~~t~~vl~~~-k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv 189 (406)
|.+|--..=++.+-.+++.-..+.-. ....-..||++.|||.+.+.++.+-.++..|+..+
T Consensus 52 Y~LqvPaNRiG~~v~s~~QLK~mQEVItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 52 YLLQVPANRIGHQVYSAAQLKTMQEVITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHhCccchhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 33333333445555555544444332 22334568999999999999999998888888665
No 116
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=35.42 E-value=3.8e+02 Score=27.71 Aligned_cols=77 Identities=17% Similarity=0.225 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhCCCCC----HHHHHHHHHHHHHHhh--hccCCCCCCCCCCCCc-cchHHHHHHHHHHHHHHHHHHHHHH
Q 015473 157 LVIAVLLKIIMRRRFS----IIQWEALALLLIGISV--NQLRSLPEGSTAMGLP-VAMGAYIYTLIFITVPSMASVFNEY 229 (406)
Q Consensus 157 l~talls~l~Lkerls----~~qwlal~ll~~GV~l--v~~~~~~~~~~~~~~~-~~~~G~ll~L~a~~~sala~V~~ek 229 (406)
=+.++...+++++|.. ..+=--+.+.++|..+ +..-+...++.. +.. ......+-+.+++...+++....|+
T Consensus 171 G~aaLa~a~~lG~R~g~~~~~~~pHNl~~~~lGa~lLWfGWfGFN~GSal-~~~~~a~~a~~nT~lAaa~g~l~w~~~e~ 249 (409)
T COG0004 171 GFAALAAALVLGKRIGGKPVAIPPHNLPLVVLGAALLWFGWFGFNAGSAL-AANGVAALAFVNTNLAAAAGALGWMLIEW 249 (409)
T ss_pred hHHHHHHHHHeecccCCCCCCCCCCchhHHHHHHHHHHHHHccCCccchh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888889998874 2222233344444433 333333222211 111 1112334455677777888888999
Q ss_pred Hhhhc
Q 015473 230 ALKSQ 234 (406)
Q Consensus 230 llk~~ 234 (406)
+.+++
T Consensus 250 ~~~~K 254 (409)
T COG0004 250 LRNGK 254 (409)
T ss_pred HHcCC
Confidence 87553
No 117
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=33.53 E-value=1.8e+02 Score=29.65 Aligned_cols=93 Identities=16% Similarity=0.090 Sum_probs=42.2
Q ss_pred Hhcc-ChHHHHHHhhhHHHHHHHHHHHHhCCCCCHH-------HHHHHHHHHHHHhhhc--cCCCCCCCCCCCCccchH-
Q 015473 140 QLYF-NPATVKMLSNLKVLVIAVLLKIIMRRRFSII-------QWEALALLLIGISVNQ--LRSLPEGSTAMGLPVAMG- 208 (406)
Q Consensus 140 l~~l-~~~t~~vl~~~k~l~talls~l~Lkerls~~-------qwlal~ll~~GV~lv~--~~~~~~~~~~~~~~~~~~- 208 (406)
+... |.+=..+ ..+.-=..++....++++|..+. .--...+.++|..++- +.+...++.....+....
T Consensus 144 ~g~~~DfaG~~v-VH~~gG~~gL~~a~~lg~R~~~~~~~~~~~~~~s~~~~~lG~~lLw~gW~gFN~gs~~~~~~~~~~~ 222 (399)
T PF00909_consen 144 LGFLIDFAGSGV-VHLFGGVFGLAAAIVLGPRRGRFDGKPNPIPPHSPPLAMLGTLLLWFGWFGFNAGSALAANGRAWLR 222 (399)
T ss_dssp CCHH--TT-TTT-THHHHHHHHHHHHHHH--CTTTTGTTTSS--HCHHHHHHHHHHHHHHHHHHHHHCCGSSSSHHHHH-
T ss_pred CccCCCCcccee-eehhhhHHHHhhheeeCCCCCcccccccCCCCCcHHHhhhhHHHHHHHhcccccccccccCCccchh
Confidence 3344 5444333 23333456777778888888764 3333444444544321 111100110000111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 015473 209 AYIYTLIFITVPSMASVFNEYALKS 233 (406)
Q Consensus 209 G~ll~L~a~~~sala~V~~ekllk~ 233 (406)
..+-+.+++..+++.....+++.++
T Consensus 223 ~~~nT~la~a~g~l~~~~~~~~~~g 247 (399)
T PF00909_consen 223 AAVNTLLAAAAGGLTWLLISYLLSG 247 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred hhhhhhhhHHHHHHHHHHhhhcccc
Confidence 2344666777778888888887654
No 118
>PRK02237 hypothetical protein; Provisional
Probab=32.80 E-value=87 Score=26.06 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCC
Q 015473 156 VLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRS 193 (406)
Q Consensus 156 ~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~ 193 (406)
++...+..+.+=|+|.++..|++..+..+|+.++...|
T Consensus 70 I~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 70 VAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
No 119
>COG5319 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.82 E-value=16 Score=31.12 Aligned_cols=15 Identities=47% Similarity=0.959 Sum_probs=12.4
Q ss_pred CCceeeccccccccc
Q 015473 3 NGMIECSVCHSKLVS 17 (406)
Q Consensus 3 ~~~~~~~~~~~~~~~ 17 (406)
.|.++|++|||..++
T Consensus 30 rgLv~CPvCgs~~Vs 44 (142)
T COG5319 30 RGLVTCPVCGSTEVS 44 (142)
T ss_pred cCceeCCCCCcHHHH
Confidence 578999999997654
No 120
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=29.66 E-value=3.3e+02 Score=22.63 Aligned_cols=47 Identities=11% Similarity=0.078 Sum_probs=36.8
Q ss_pred hhHHHHHHhhHHH--HHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhc
Q 015473 302 DAILKKYSSTVAT--IFTGIASAVLFGHTLTMNFLLGISIVFISMHQFF 348 (406)
Q Consensus 302 ~~i~k~~a~~~~i--v~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~ 348 (406)
++--+.++.+-.+ +.+.+.++.+-|++||..-++|..+++.|+.+-.
T Consensus 54 ~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~ 102 (107)
T PF02694_consen 54 AAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIIL 102 (107)
T ss_pred ccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheE
Confidence 4445667776554 5677788888899999999999999999886543
No 121
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=27.39 E-value=3.1e+02 Score=26.99 Aligned_cols=67 Identities=22% Similarity=0.333 Sum_probs=49.9
Q ss_pred HHH-HHHHHHHHHHHH-HHhc-------cChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 015473 124 VPA-FLYAINNYLKFI-MQLY-------FNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQ 190 (406)
Q Consensus 124 vpA-lly~~~n~L~f~-al~~-------l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~ 190 (406)
+|. ..|.+.|.+..+ -.+. .+.-|.++...+.=.+..++|...++..+++.+|++..+.|.|.++..
T Consensus 238 vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 238 VPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA 313 (330)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 555 356666655433 3332 344455566777788899999999999999999999999999998863
No 122
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=27.32 E-value=1.1e+02 Score=25.44 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCC
Q 015473 152 SNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRS 193 (406)
Q Consensus 152 ~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~ 193 (406)
.-.-++...+..+.+=|+|.++..|++..+..+|+.++...|
T Consensus 64 GGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 64 GGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred hhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 334566666778899999999999999999999999987655
No 123
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=26.44 E-value=7.3e+02 Score=25.56 Aligned_cols=21 Identities=14% Similarity=-0.047 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 015473 213 TLIFITVPSMASVFNEYALKS 233 (406)
Q Consensus 213 ~L~a~~~sala~V~~ekllk~ 233 (406)
+.+++..++++....+++.++
T Consensus 246 T~la~a~g~l~~~~~~~~~~g 266 (404)
T TIGR03644 246 TNAAAAGGAIAALLLTKLLFG 266 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 455666677777777876554
No 124
>PTZ00074 60S ribosomal protein L34; Provisional
Probab=26.39 E-value=47 Score=28.76 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=21.3
Q ss_pred CceeecccccccccC-------------CccchhhhhccCCcccchhhH
Q 015473 4 GMIECSVCHSKLVSP-------------TTKSISRAYDRHKTRVSSKQR 39 (406)
Q Consensus 4 ~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~k~~ 39 (406)
...-|.+|+.++.-- ..++++|+|++..-..-.+.+
T Consensus 40 ~~pkC~~cg~~L~GI~~~Rp~e~~rlsK~~KtvsRaYGG~lC~~CVr~r 88 (135)
T PTZ00074 40 SGPKCGDCGKVLAGIKALRPTEYKQLSRRERTVSRAYGGVLCHKCVRDR 88 (135)
T ss_pred CCCCCCCCCCccCCccCCchHHHHHccccCCCccCCCccchhHHHHHHH
Confidence 345699999987542 235566666665444444433
No 125
>PRK04059 rpl34e 50S ribosomal protein L34e; Validated
Probab=25.72 E-value=38 Score=27.10 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=20.0
Q ss_pred CceeecccccccccC-------------CccchhhhhccCCcc
Q 015473 4 GMIECSVCHSKLVSP-------------TTKSISRAYDRHKTR 33 (406)
Q Consensus 4 ~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~ 33 (406)
....|.+|+.++.-- ..++|+|+|++..-.
T Consensus 33 ~~pkC~~c~~~L~Gi~~~Rp~~~~rlsK~~K~vsRaYGG~lc~ 75 (88)
T PRK04059 33 SKAKCAICGKPLNGVPRGRPVEIRKLGKTEKRPERPYGGYLCP 75 (88)
T ss_pred CCCcCCCCCCccCCccCcchHHHHhcccccCCcccCcCceecH
Confidence 345699999987543 346777777765443
No 126
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=25.48 E-value=23 Score=34.45 Aligned_cols=95 Identities=16% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHhccChHHHHHHhhhHHH-HHHHHHHHHhCCCC-CHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCccchHHHHHHH
Q 015473 137 FIMQLYFNPATVKMLSNLKVL-VIAVLLKIIMRRRF-SIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTL 214 (406)
Q Consensus 137 f~al~~l~~~t~~vl~~~k~l-~talls~l~Lkerl-s~~qwlal~ll~~GV~lv~~~~~~~~~~~~~~~~~~~G~ll~L 214 (406)
|+-++-++-+...++++..++ .+.|+-.+++|||+ -+.-.+|++++++-.++..+-... + +.-+.|+++.+
T Consensus 41 ~iimsd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLt-G------Q~LF~Gi~~l~ 113 (381)
T PF05297_consen 41 FIIMSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLT-G------QTLFVGIVILF 113 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhh-c------cHHHHHHHHHH
Confidence 445555666666667665544 44445556666664 455667777777655554332211 1 11234555444
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcchH
Q 015473 215 IFITVPSMASVFNEYALKSQYDTSIY 240 (406)
Q Consensus 215 ~a~~~sala~V~~ekllk~~~~~s~~ 240 (406)
+.++++=..-.|.+ +++++ ..+.|
T Consensus 114 l~~lLaL~vW~Ym~-lLr~~-GAs~W 137 (381)
T PF05297_consen 114 LCCLLALGVWFYMW-LLREL-GASFW 137 (381)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHH-HHHHh-hhHHH
Confidence 44443333334544 45544 45666
No 127
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=24.63 E-value=36 Score=22.16 Aligned_cols=12 Identities=25% Similarity=0.733 Sum_probs=8.9
Q ss_pred Cceeeccccccc
Q 015473 4 GMIECSVCHSKL 15 (406)
Q Consensus 4 ~~~~~~~~~~~~ 15 (406)
+.++|+.||...
T Consensus 24 ~~v~C~~C~~~~ 35 (38)
T TIGR02098 24 GKVRCGKCGHVW 35 (38)
T ss_pred CEEECCCCCCEE
Confidence 368888888764
No 128
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=24.02 E-value=28 Score=22.90 Aligned_cols=17 Identities=29% Similarity=0.839 Sum_probs=14.3
Q ss_pred ceeecccccccccCCcc
Q 015473 5 MIECSVCHSKLVSPTTK 21 (406)
Q Consensus 5 ~~~~~~~~~~~~~~~~~ 21 (406)
.++|+.||+...+|.++
T Consensus 2 ~i~CP~C~~~f~v~~~~ 18 (37)
T PF13719_consen 2 IITCPNCQTRFRVPDDK 18 (37)
T ss_pred EEECCCCCceEEcCHHH
Confidence 37999999998888765
No 129
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=23.65 E-value=7.3e+02 Score=25.50 Aligned_cols=91 Identities=11% Similarity=0.073 Sum_probs=41.9
Q ss_pred hccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHhhh--ccCCCCCCCCCCCCc-cchHHHH
Q 015473 141 LYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSII------QWEALALLLIGISVN--QLRSLPEGSTAMGLP-VAMGAYI 211 (406)
Q Consensus 141 ~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~------qwlal~ll~~GV~lv--~~~~~~~~~~~~~~~-~~~~G~l 211 (406)
.+.|.+=..++--. -=.+++...+++++|..+. +--...+.++|..++ .+.+...++.. ..+ ......+
T Consensus 153 G~~DfAG~~vVH~~-gG~~~L~~a~~LGpR~~r~~~~~~~~~~n~~~~~lGt~lLw~gW~gFN~Gs~~-~~~~~~~~a~~ 230 (403)
T TIGR00836 153 GVLDFAGGGVVHIV-GGVAGLAAALVLGPRIGRFPRPVAIRPHNVPLVVLGTFILWFGWFGFNAGSAL-AANGTAAYAAV 230 (403)
T ss_pred CcchhcCceeEecc-hhHHHHHHHHHhcCCCCCCcCcCCCCCCCHHHHHHHHHHHHHHHhcccchhhc-ccchHHHHHHH
Confidence 34444433333222 2344566667777665443 112344555555443 22332212111 111 1112233
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 015473 212 YTLIFITVPSMASVFNEYALKS 233 (406)
Q Consensus 212 l~L~a~~~sala~V~~ekllk~ 233 (406)
=+.+++..++++....+++.++
T Consensus 231 nT~lA~a~g~l~~~~~~~~~~g 252 (403)
T TIGR00836 231 NTNLAAAAGGLTWLLIDWLKHG 252 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 4556667777888888876543
No 130
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=23.35 E-value=31 Score=30.37 Aligned_cols=16 Identities=44% Similarity=0.897 Sum_probs=13.4
Q ss_pred CCCceeeccccccccc
Q 015473 2 KNGMIECSVCHSKLVS 17 (406)
Q Consensus 2 ~~~~~~~~~~~~~~~~ 17 (406)
++|+++|++|+|.-+.
T Consensus 29 ~~glv~CP~Cgs~~V~ 44 (148)
T PF06676_consen 29 ARGLVSCPVCGSTEVS 44 (148)
T ss_pred HcCCccCCCCCCCeEe
Confidence 4799999999997654
No 131
>PF05077 DUF678: Protein of unknown function (DUF678); InterPro: IPR007769 This family contains poxvirus proteins belonging to the A19 family. The proteins are of unknown function.
Probab=22.87 E-value=25 Score=26.92 Aligned_cols=16 Identities=44% Similarity=0.717 Sum_probs=12.9
Q ss_pred ceeecccccccccCCc
Q 015473 5 MIECSVCHSKLVSPTT 20 (406)
Q Consensus 5 ~~~~~~~~~~~~~~~~ 20 (406)
-.-||.||||++.-++
T Consensus 25 c~tCSsC~SkLV~~Sd 40 (74)
T PF05077_consen 25 CTTCSSCQSKLVKFSD 40 (74)
T ss_pred ccchhhhhhheeeeec
Confidence 3679999999987665
No 132
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=22.76 E-value=69 Score=23.63 Aligned_cols=10 Identities=30% Similarity=0.876 Sum_probs=7.6
Q ss_pred eecccccccc
Q 015473 7 ECSVCHSKLV 16 (406)
Q Consensus 7 ~~~~~~~~~~ 16 (406)
.|.+|+.++.
T Consensus 5 HC~~CG~~Ip 14 (59)
T PF09889_consen 5 HCPVCGKPIP 14 (59)
T ss_pred cCCcCCCcCC
Confidence 6999986654
No 133
>PF01199 Ribosomal_L34e: Ribosomal protein L34e; InterPro: IPR008195 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins belong to the L34e family. These include, vertebrate L34, mosquito L31 [], plant L34 [], yeast putative ribosomal protein YIL052c and archaebacterial L34e.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_i 3IZS_i 4A19_L 4A1D_L 4A18_L 4A1B_L.
Probab=21.35 E-value=55 Score=26.56 Aligned_cols=34 Identities=24% Similarity=0.382 Sum_probs=18.9
Q ss_pred ceeecccccccccC-------------CccchhhhhccCCcccchhh
Q 015473 5 MIECSVCHSKLVSP-------------TTKSISRAYDRHKTRVSSKQ 38 (406)
Q Consensus 5 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~k~ 38 (406)
...|.+|+.++.-- ..++++|+|++..-..-.+.
T Consensus 41 ~pkC~~cg~~L~Gi~~~rp~~~~rl~k~~k~vsRaYGG~lc~~cvr~ 87 (94)
T PF01199_consen 41 KPKCGDCGKPLNGIPALRPVELRRLSKRQKTVSRAYGGSLCHKCVRE 87 (94)
T ss_dssp --BSTSSS-BSSSS-SS-SSTTGTS-CHCH--CCTSSSS-HHHHHHH
T ss_pred CCCcCccCCcccccccccHHHHhhcccCCCCCCCCCCccchHHHHHH
Confidence 45699999876542 24788999988765544443
No 134
>PHA03049 IMV membrane protein; Provisional
Probab=20.84 E-value=1.4e+02 Score=22.59 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHhccccccccc
Q 015473 331 MNFLLGISIVFISMHQFFSSLSKAKD 356 (406)
Q Consensus 331 ~~~~lG~~LVi~gv~ly~~~~~~~k~ 356 (406)
-..+++++.++.|..+|.-+ +|++.
T Consensus 4 d~~l~iICVaIi~lIvYgiY-nkk~~ 28 (68)
T PHA03049 4 DIILVIICVVIIGLIVYGIY-NKKTT 28 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcccc
Confidence 34567888888898888765 34343
No 135
>PF13347 MFS_2: MFS/sugar transport protein
Probab=20.41 E-value=6.8e+02 Score=25.09 Aligned_cols=20 Identities=25% Similarity=0.271 Sum_probs=9.8
Q ss_pred HHhCCCCCHHHHHHHHHHHH
Q 015473 165 IIMRRRFSIIQWEALALLLI 184 (406)
Q Consensus 165 l~Lkerls~~qwlal~ll~~ 184 (406)
-.+.+|+++++...+..+..
T Consensus 281 ~~l~~r~gk~~~~~~~~~~~ 300 (428)
T PF13347_consen 281 GRLSKRFGKKKVYIIGLLLA 300 (428)
T ss_pred HHHHHHccceeehhhhHHHH
Confidence 44445666655544443333
No 136
>COG4896 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.21 E-value=33 Score=25.44 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=16.1
Q ss_pred ceeecccccccccCCccchhhhhccC
Q 015473 5 MIECSVCHSKLVSPTTKSISRAYDRH 30 (406)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (406)
+.-|.+||+++.- ++.+|+..+|
T Consensus 31 tymC~eC~~Rva~---kt~~R~~~g~ 53 (68)
T COG4896 31 TYMCPECEHRVAI---KTISRVNSGH 53 (68)
T ss_pred eEechhhHhhhch---hhHHHhccCC
Confidence 4569999999764 4566666544
Done!