Query 015473
Match_columns 406
No_of_seqs 218 out of 1249
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 13:14:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015473.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015473hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.3 4.7E-06 1.6E-10 68.5 10.8 72 122-193 33-105 (110)
2 2i68_A Protein EMRE; transmemb 98.1 2.9E-06 1E-10 72.5 6.4 72 122-193 33-105 (137)
3 2i68_A Protein EMRE; transmemb 98.0 8E-06 2.7E-10 69.8 5.7 66 285-350 38-104 (137)
4 3b5d_A Multidrug transporter E 97.6 0.00035 1.2E-08 57.2 9.9 64 287-350 40-104 (110)
5 3u5e_g 60S ribosomal protein L 37.9 26 0.00088 28.6 3.4 37 5-41 41-90 (121)
6 3b9w_A Ammonium transporter fa 35.6 2.1E+02 0.007 28.2 10.3 72 157-230 150-228 (407)
7 3iz5_i 60S ribosomal protein L 25.3 40 0.0014 27.4 2.5 37 5-41 41-92 (119)
8 4a18_L RPL34; ribosome, eukary 22.1 61 0.0021 26.4 3.0 37 5-41 41-92 (123)
9 3j21_d 50S ribosomal protein L 17.4 46 0.0016 25.6 1.3 28 5-33 33-73 (89)
10 1rwj_A Cytochrome C family pro 16.7 39 0.0013 25.4 0.7 12 5-16 29-40 (82)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.31 E-value=4.7e-06 Score=68.52 Aligned_cols=72 Identities=15% Similarity=0.194 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccChHHHHHH-hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCC
Q 015473 122 LAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRS 193 (406)
Q Consensus 122 ~~vpAlly~~~n~L~f~al~~l~~~t~~vl-~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~ 193 (406)
...-.+.|.+...+...+++++|.+....+ ..+.|+.+++++++++||++++.||+++.+..+|++.+...+
T Consensus 33 ~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 344456788999999999999999999888 899999999999999999999999999999999999986543
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.15 E-value=2.9e-06 Score=72.50 Aligned_cols=72 Identities=15% Similarity=0.194 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccChHHHHHH-hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCC
Q 015473 122 LAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRS 193 (406)
Q Consensus 122 ~~vpAlly~~~n~L~f~al~~l~~~t~~vl-~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~ 193 (406)
..+-.+.|.+...+++.+++++|++....+ ..+.|+++++++++++||++++.||+++++.++|++++...+
T Consensus 33 ~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp -CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 344456788999999999999999988777 899999999999999999999999999999999999986543
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.97 E-value=8e-06 Score=69.79 Aligned_cols=66 Identities=17% Similarity=0.152 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHH-hhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015473 285 FNNAAQGILSCFFLKYADAILKKYS-STVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS 350 (406)
Q Consensus 285 ~~~aigg~~v~~~~ky~~~i~k~~a-~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~ 350 (406)
+..+++-.+....+|+.+....... +.+.+++++++|+++|||++|+.+++|+++|+.|+++.+..
T Consensus 38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3444555666777888776655444 78999999999999999999999999999999999988764
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.62 E-value=0.00035 Score=57.19 Aligned_cols=64 Identities=17% Similarity=0.161 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHH-hhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015473 287 NAAQGILSCFFLKYADAILKKYS-STVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS 350 (406)
Q Consensus 287 ~aigg~~v~~~~ky~~~i~k~~a-~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~ 350 (406)
.++.-.+....+|+.|....... ..+++++++++++++|||++|..+++|+.+++.|+.+.+..
T Consensus 40 ~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34444566678888875555443 68899999999999999999999999999999999987664
No 5
>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_g 4b6a_g 3izc_i 3izs_i
Probab=37.88 E-value=26 Score=28.58 Aligned_cols=37 Identities=30% Similarity=0.515 Sum_probs=25.5
Q ss_pred ceeecccccccccCC-------------ccchhhhhccCCcccchhhHHH
Q 015473 5 MIECSVCHSKLVSPT-------------TKSISRAYDRHKTRVSSKQRVL 41 (406)
Q Consensus 5 ~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~k~~~l 41 (406)
.--|.+|+.++.--+ .++++|+|++..-..-.+.+-+
T Consensus 41 ~pkCg~Cg~~L~GI~~~RP~e~~rlsK~~KtvsRaYGG~lC~~CVr~RI~ 90 (121)
T 3u5e_g 41 RPKCGDCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRCANCVKERII 90 (121)
T ss_dssp CCBCTTTCCBCTTCCCCCGGGGGSSCGGGSCCSSTTTTTSCSHHHHHHHH
T ss_pred CCCCCCCCCccCCccCCcHHHHHhcccCCCCcccCCcccchHHHHHHHHH
Confidence 445999998875422 2578888888777766666544
No 6
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=35.59 E-value=2.1e+02 Score=28.15 Aligned_cols=72 Identities=11% Similarity=0.008 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhCCCCCH-----HHHHHHHHHHHHHhhh--ccCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHH
Q 015473 157 LVIAVLLKIIMRRRFSI-----IQWEALALLLIGISVN--QLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEY 229 (406)
Q Consensus 157 l~talls~l~Lkerls~-----~qwlal~ll~~GV~lv--~~~~~~~~~~~~~~~~~~~G~ll~L~a~~~sala~V~~ek 229 (406)
-..++...++|++|..+ .+--.+.+.++|..+. -+.+...+. ..+ .......+=+.+++..++++....++
T Consensus 150 G~~aLa~a~~LG~R~~~~~~~~~~~hn~~~~~lGt~lLW~GWfGFN~Gl-~~~-~~~~~a~~NT~lAaaag~l~~~~~~~ 227 (407)
T 3b9w_A 150 AYFGLGVSIALTTAAQRAQPIESDATSDRFSMLGSMVLWLFWPSFATAI-VPF-EQMPQTIVNTLLALCGATLATYFLSA 227 (407)
T ss_dssp HHHHHHHHHHHCCHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHTT-SCG-GGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCccccCCCCcCCCCCHHHHHHHHHHHHHHHHhhhhhh-ccc-hhhHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34566777777766422 1233455555665543 111111010 000 01112233345566666777776776
Q ss_pred H
Q 015473 230 A 230 (406)
Q Consensus 230 l 230 (406)
+
T Consensus 228 ~ 228 (407)
T 3b9w_A 228 L 228 (407)
T ss_dssp H
T ss_pred H
Confidence 5
No 7
>3iz5_i 60S ribosomal protein L34 (L34E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_i
Probab=25.32 E-value=40 Score=27.39 Aligned_cols=37 Identities=16% Similarity=0.367 Sum_probs=24.0
Q ss_pred ceeecccccccccCC---------------ccchhhhhccCCcccchhhHHH
Q 015473 5 MIECSVCHSKLVSPT---------------TKSISRAYDRHKTRVSSKQRVL 41 (406)
Q Consensus 5 ~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~k~~~l 41 (406)
.--|.+|+.++.--+ .++++|+|++..-..-.+.+-+
T Consensus 41 ~pkC~~cg~~L~GI~~~Rp~e~~~~rlsK~~KtvsRaYGG~lC~~CVr~rI~ 92 (119)
T 3iz5_i 41 GPKCPVTGKKIQGIPHLRPTEYKRPRLSRNRRTVNRPYGGVLSGPAVRERII 92 (119)
T ss_dssp CCCSTTSSCCSSSCCSSCSSTTCCCCCCSCCCCCBCCSCCCCHHHHHHHHHH
T ss_pred CCCCCCCCCccCCccCCCchhhhhhhccccCCCcccCCCccchHHHHHHHHH
Confidence 345999988765422 2577888888776665555544
No 8
>4a18_L RPL34; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_L 4a1b_L 4a1d_L 4adx_4
Probab=22.15 E-value=61 Score=26.42 Aligned_cols=37 Identities=22% Similarity=0.392 Sum_probs=24.8
Q ss_pred ceeecccc--cccccCC-------------ccchhhhhccCCcccchhhHHH
Q 015473 5 MIECSVCH--SKLVSPT-------------TKSISRAYDRHKTRVSSKQRVL 41 (406)
Q Consensus 5 ~~~~~~~~--~~~~~~~-------------~~~~~~~~~~~~~~~~~k~~~l 41 (406)
.--|.+|+ .++.--+ .++++|+|++..-..-.+.+-+
T Consensus 41 ~pkCg~cg~~~~L~GI~~~RP~e~~rlsK~~KtvsRaYGG~lC~~CVr~RI~ 92 (123)
T 4a18_L 41 YTKCSEAGCNVALNGIAQVRPAEYATIARSAKTVSRVYGGELCHTCVRSRII 92 (123)
T ss_dssp CCBCCSTTTCCBCSSSCCCCTTGGGTSCHHHHCCSSTTSSSCCHHHHHHHHH
T ss_pred CCcCCCCCCccccCCcCCCcHHHHHhccccCCCcccCCCccchHHHHHHHHH
Confidence 44599999 6553221 2588999998877766666544
No 9
>3j21_d 50S ribosomal protein L34E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=17.40 E-value=46 Score=25.56 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=18.8
Q ss_pred ceeecccccccccCCc-------------cchhhhhccCCcc
Q 015473 5 MIECSVCHSKLVSPTT-------------KSISRAYDRHKTR 33 (406)
Q Consensus 5 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~ 33 (406)
.-.|.+|+.++.--.+ ++++|+|+ ..-.
T Consensus 33 ~pkC~~cg~~L~Gi~~~Rp~~~~rlsK~~KtvsRaYG-~lC~ 73 (89)
T 3j21_d 33 IAHCAMCGRPLNGIPRGRPVEMRKLPKTKKRPERPMP-HLCP 73 (89)
T ss_dssp CCBCSSSCCBCTTCCCCCTTGGGGSCHHHHCCSSSCT-TSCH
T ss_pred CCCCCCCCCccCCccCccHHHHHhcccCCCCcCCCcc-cchH
Confidence 4569999988754332 47778887 5443
No 10
>1rwj_A Cytochrome C family protein; multiheme cytochrome C, geobacter metallireducens, heme coordination in C-type cytochromes; HET: HEM; 1.70A {Geobacter sulfurreducens} SCOP: a.138.1.1
Probab=16.71 E-value=39 Score=25.37 Aligned_cols=12 Identities=50% Similarity=1.154 Sum_probs=9.8
Q ss_pred ceeecccccccc
Q 015473 5 MIECSVCHSKLV 16 (406)
Q Consensus 5 ~~~~~~~~~~~~ 16 (406)
+.+|++||.++.
T Consensus 29 ~~~C~~CH~~~f 40 (82)
T 1rwj_A 29 MYKCNECHTKLF 40 (82)
T ss_dssp TCCGGGTBTTTB
T ss_pred CCChhhcccccc
Confidence 469999999863
Done!