Query 015475
Match_columns 406
No_of_seqs 336 out of 2257
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 06:39:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015475.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015475hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0883 Cyclophilin type, U bo 100.0 4E-102 1E-106 763.7 16.8 325 1-405 1-333 (518)
2 PF04641 Rtf2: Rtf2 RING-finge 100.0 3.9E-36 8.4E-41 291.8 11.1 143 33-178 28-188 (260)
3 KOG3039 Uncharacterized conser 100.0 3.4E-34 7.4E-39 269.4 10.0 156 5-163 3-282 (303)
4 KOG3113 Uncharacterized conser 99.9 2.6E-25 5.6E-30 210.2 7.6 120 36-159 31-166 (293)
5 COG0652 PpiB Peptidyl-prolyl c 99.8 3.8E-19 8.3E-24 160.7 5.8 56 350-406 1-56 (158)
6 KOG0881 Cyclophilin type pepti 99.7 5.1E-18 1.1E-22 146.5 4.2 58 347-405 8-65 (164)
7 PRK10791 peptidyl-prolyl cis-t 99.7 7.1E-17 1.5E-21 147.1 6.8 54 351-405 2-55 (164)
8 cd01923 cyclophilin_RING cyclo 99.7 6.7E-17 1.5E-21 146.4 6.6 55 350-405 1-55 (159)
9 cd01925 cyclophilin_CeCYP16-li 99.7 9.8E-17 2.1E-21 147.1 7.5 60 345-405 2-61 (171)
10 PRK10903 peptidyl-prolyl cis-t 99.7 9.9E-17 2.1E-21 149.5 7.5 59 346-405 26-84 (190)
11 cd01928 Cyclophilin_PPIL3_like 99.7 1.5E-16 3.3E-21 143.3 6.9 55 350-405 2-56 (153)
12 cd01927 cyclophilin_WD40 cyclo 99.6 2.4E-16 5.1E-21 141.3 5.9 53 352-405 1-53 (148)
13 cd01920 cyclophilin_EcCYP_like 99.6 3.5E-16 7.5E-21 141.2 6.1 53 352-405 1-53 (155)
14 cd01922 cyclophilin_SpCYP2_lik 99.6 4.6E-16 1E-20 139.2 6.1 52 353-405 2-53 (146)
15 KOG0885 Peptidyl-prolyl cis-tr 99.6 2.8E-15 6E-20 149.1 5.3 60 345-405 9-68 (439)
16 KOG0882 Cyclophilin-related pe 99.5 2.5E-15 5.3E-20 152.5 3.2 58 348-406 404-461 (558)
17 KOG0884 Similar to cyclophilin 99.5 7.4E-15 1.6E-19 126.3 5.5 55 350-405 2-56 (161)
18 cd00317 cyclophilin cyclophili 99.5 4.3E-14 9.4E-19 125.2 6.3 52 353-405 2-53 (146)
19 PF00160 Pro_isomerase: Cyclop 99.5 9.6E-14 2.1E-18 124.0 7.3 55 350-405 1-56 (155)
20 cd01926 cyclophilin_ABH_like c 99.4 3.1E-13 6.8E-18 123.0 7.2 55 350-405 4-69 (164)
21 PLN03149 peptidyl-prolyl isome 99.4 5.1E-13 1.1E-17 124.2 7.9 49 356-405 31-87 (186)
22 PTZ00060 cyclophilin; Provisio 99.4 4.5E-13 9.6E-18 124.3 7.2 50 355-405 27-85 (183)
23 KOG0546 HSP90 co-chaperone CPR 99.4 2.2E-13 4.7E-18 135.9 4.0 48 356-404 21-79 (372)
24 KOG0880 Peptidyl-prolyl cis-tr 99.3 1.1E-12 2.4E-17 121.2 5.1 48 356-404 52-103 (217)
25 KOG0879 U-snRNP-associated cyc 99.2 2.5E-12 5.5E-17 112.5 2.6 49 355-404 22-78 (177)
26 PTZ00221 cyclophilin; Provisio 99.2 1.5E-11 3.3E-16 119.0 7.5 58 347-405 51-125 (249)
27 smart00504 Ubox Modified RING 99.1 4E-11 8.6E-16 91.4 3.7 58 40-97 2-59 (63)
28 PF04564 U-box: U-box domain; 99.0 1.1E-10 2.5E-15 92.6 0.1 61 37-97 2-63 (73)
29 KOG0111 Cyclophilin-type pepti 98.9 4.3E-10 9.3E-15 105.9 2.1 49 355-404 148-199 (298)
30 smart00504 Ubox Modified RING 98.4 3.4E-07 7.4E-12 69.6 4.6 53 100-158 1-53 (63)
31 PF11789 zf-Nse: Zinc-finger o 98.3 3.4E-07 7.4E-12 69.6 1.7 42 39-80 11-55 (57)
32 KOG0289 mRNA splicing factor [ 98.2 6.8E-07 1.5E-11 91.4 2.4 55 41-95 2-57 (506)
33 KOG0865 Cyclophilin type pepti 97.9 6.4E-06 1.4E-10 75.6 2.0 49 355-404 15-69 (167)
34 KOG0978 E3 ubiquitin ligase in 97.8 4.1E-06 8.8E-11 91.0 0.2 55 99-158 642-696 (698)
35 KOG0320 Predicted E3 ubiquitin 97.7 1.7E-05 3.8E-10 72.8 2.9 57 98-158 129-185 (187)
36 KOG0826 Predicted E3 ubiquitin 97.7 1.2E-05 2.7E-10 79.9 1.2 59 34-92 295-354 (357)
37 PF04564 U-box: U-box domain; 97.7 6.7E-05 1.5E-09 59.5 4.7 54 99-157 3-56 (73)
38 PF13445 zf-RING_UBOX: RING-ty 97.6 6.8E-05 1.5E-09 53.9 3.1 41 103-144 1-43 (43)
39 PLN03208 E3 ubiquitin-protein 97.4 0.00014 3.1E-09 68.0 4.6 75 38-124 17-91 (193)
40 KOG0317 Predicted E3 ubiquitin 97.4 0.00012 2.6E-09 71.9 3.2 59 33-91 233-291 (293)
41 PLN03208 E3 ubiquitin-protein 97.4 0.00022 4.8E-09 66.8 4.7 58 98-159 16-87 (193)
42 TIGR00570 cdk7 CDK-activating 97.3 0.00018 3.9E-09 71.9 3.4 54 100-155 3-58 (309)
43 KOG0823 Predicted E3 ubiquitin 97.2 0.00021 4.5E-09 68.3 3.3 58 36-93 44-104 (230)
44 KOG0320 Predicted E3 ubiquitin 97.1 0.00033 7.1E-09 64.6 2.9 61 33-93 125-187 (187)
45 KOG2164 Predicted E3 ubiquitin 97.1 0.00043 9.4E-09 72.6 3.8 57 41-97 188-249 (513)
46 PF11789 zf-Nse: Zinc-finger o 97.1 0.00061 1.3E-08 51.9 3.5 46 99-147 10-55 (57)
47 KOG4642 Chaperone-dependent E3 96.8 0.00051 1.1E-08 66.5 1.3 62 33-94 205-267 (284)
48 PF14634 zf-RING_5: zinc-RING 96.7 0.0012 2.5E-08 47.3 2.7 44 102-148 1-44 (44)
49 PF13923 zf-C3HC4_2: Zinc fing 96.6 0.0034 7.3E-08 43.6 4.3 39 103-146 1-39 (39)
50 PF13923 zf-C3HC4_2: Zinc fing 96.6 0.0023 5E-08 44.4 3.3 37 42-78 1-38 (39)
51 KOG2164 Predicted E3 ubiquitin 96.3 0.0023 5.1E-08 67.3 2.5 70 82-159 172-244 (513)
52 PF13639 zf-RING_2: Ring finge 96.2 0.0054 1.2E-07 43.5 3.3 42 102-146 2-43 (44)
53 TIGR00599 rad18 DNA repair pro 96.1 0.0035 7.7E-08 64.9 2.9 55 38-92 25-79 (397)
54 PF13920 zf-C3HC4_3: Zinc fing 96.1 0.0088 1.9E-07 43.7 4.2 46 100-151 2-48 (50)
55 KOG0317 Predicted E3 ubiquitin 96.0 0.0045 9.8E-08 61.0 3.0 56 98-159 237-292 (293)
56 TIGR00599 rad18 DNA repair pro 96.0 0.0053 1.1E-07 63.7 3.4 52 98-155 24-75 (397)
57 KOG2817 Predicted E3 ubiquitin 95.7 0.007 1.5E-07 62.1 2.8 57 99-156 333-390 (394)
58 PF00097 zf-C3HC4: Zinc finger 95.7 0.018 3.9E-07 40.0 4.0 41 103-146 1-41 (41)
59 COG5109 Uncharacterized conser 95.5 0.0076 1.6E-07 60.1 2.1 58 100-158 336-394 (396)
60 COG5574 PEX10 RING-finger-cont 95.2 0.012 2.7E-07 57.4 2.4 55 37-91 213-269 (271)
61 PF15227 zf-C3HC4_4: zinc fing 95.1 0.033 7.2E-07 39.6 4.0 40 103-146 1-42 (42)
62 PHA02929 N1R/p28-like protein; 95.1 0.018 3.8E-07 56.0 3.3 46 38-83 173-226 (238)
63 cd00162 RING RING-finger (Real 95.1 0.026 5.6E-07 38.6 3.3 45 102-150 1-45 (45)
64 KOG3039 Uncharacterized conser 94.9 0.023 5E-07 55.1 3.5 55 38-92 220-278 (303)
65 PF13639 zf-RING_2: Ring finge 94.9 0.031 6.6E-07 39.6 3.3 39 40-78 1-42 (44)
66 KOG2979 Protein involved in DN 94.8 0.011 2.4E-07 57.5 0.9 59 39-128 176-235 (262)
67 PF15227 zf-C3HC4_4: zinc fing 94.3 0.04 8.8E-07 39.2 2.7 32 42-73 1-32 (42)
68 COG5574 PEX10 RING-finger-cont 94.1 0.028 6E-07 55.0 2.0 57 98-158 213-269 (271)
69 PHA02929 N1R/p28-like protein; 94.0 0.048 1E-06 53.0 3.5 50 100-151 174-227 (238)
70 PF04641 Rtf2: Rtf2 RING-finge 93.8 0.063 1.4E-06 52.6 3.9 59 37-124 111-173 (260)
71 KOG0826 Predicted E3 ubiquitin 93.6 0.026 5.7E-07 56.7 0.9 53 101-158 301-353 (357)
72 KOG2879 Predicted E3 ubiquitin 92.8 0.076 1.7E-06 52.3 2.8 51 98-151 237-287 (298)
73 PF00097 zf-C3HC4: Zinc finger 92.7 0.16 3.5E-06 35.1 3.6 31 42-72 1-32 (41)
74 PF13920 zf-C3HC4_3: Zinc fing 92.6 0.18 3.8E-06 36.7 3.8 44 40-83 3-47 (50)
75 PF13445 zf-RING_UBOX: RING-ty 92.3 0.18 3.9E-06 36.2 3.4 31 42-73 1-35 (43)
76 smart00184 RING Ring finger. E 91.9 0.13 2.9E-06 33.6 2.2 39 103-146 1-39 (39)
77 KOG0823 Predicted E3 ubiquitin 91.5 0.21 4.7E-06 48.0 4.0 59 96-158 43-102 (230)
78 PHA02926 zinc finger-like prot 91.4 0.14 3.1E-06 49.1 2.7 53 99-151 169-230 (242)
79 PF14447 Prok-RING_4: Prokaryo 91.2 0.096 2.1E-06 39.6 1.0 34 118-155 21-54 (55)
80 PF02891 zf-MIZ: MIZ/SP-RING z 90.9 0.26 5.7E-06 36.4 3.1 46 101-149 3-50 (50)
81 KOG0978 E3 ubiquitin ligase in 90.7 0.11 2.4E-06 57.2 1.4 56 38-93 642-698 (698)
82 KOG3800 Predicted E3 ubiquitin 90.4 0.18 4E-06 50.0 2.5 54 102-157 2-57 (300)
83 KOG0289 mRNA splicing factor [ 90.3 0.21 4.5E-06 52.2 2.8 58 101-163 1-58 (506)
84 smart00184 RING Ring finger. E 90.0 0.35 7.6E-06 31.6 2.9 37 42-78 1-38 (39)
85 KOG2177 Predicted E3 ubiquitin 89.7 0.17 3.7E-06 47.5 1.6 45 98-148 11-55 (386)
86 cd00162 RING RING-finger (Real 89.6 0.48 1E-05 32.1 3.5 40 41-80 1-42 (45)
87 PF02891 zf-MIZ: MIZ/SP-RING z 86.9 0.75 1.6E-05 34.0 3.1 34 40-73 3-39 (50)
88 KOG1813 Predicted E3 ubiquitin 86.4 0.43 9.3E-06 47.6 2.1 47 34-81 237-283 (313)
89 PF12678 zf-rbx1: RING-H2 zinc 85.8 0.88 1.9E-05 36.0 3.2 41 39-79 19-72 (73)
90 PF06416 DUF1076: Protein of u 83.5 1.2 2.6E-05 38.5 3.2 53 38-90 39-97 (113)
91 KOG0287 Postreplication repair 83.2 0.51 1.1E-05 48.0 1.0 51 99-155 22-72 (442)
92 PF14835 zf-RING_6: zf-RING of 82.5 0.4 8.6E-06 37.5 -0.0 49 101-156 8-56 (65)
93 PF10367 Vps39_2: Vacuolar sor 82.3 0.59 1.3E-05 38.6 0.9 30 101-132 79-108 (109)
94 COG5432 RAD18 RING-finger-cont 82.1 0.73 1.6E-05 46.0 1.6 43 39-81 25-67 (391)
95 KOG0396 Uncharacterized conser 79.7 0.8 1.7E-05 47.0 1.0 78 75-155 306-383 (389)
96 KOG2177 Predicted E3 ubiquitin 79.4 0.64 1.4E-05 43.6 0.2 34 38-71 12-45 (386)
97 KOG0287 Postreplication repair 78.6 0.65 1.4E-05 47.2 0.0 50 39-88 23-72 (442)
98 KOG0297 TNF receptor-associate 78.1 1.6 3.5E-05 45.4 2.7 52 39-90 21-73 (391)
99 KOG2979 Protein involved in DN 76.8 1.6 3.4E-05 42.9 2.0 59 100-165 176-234 (262)
100 COG5113 UFD2 Ubiquitin fusion 76.3 2.2 4.9E-05 46.7 3.2 61 36-96 851-912 (929)
101 KOG0827 Predicted E3 ubiquitin 76.0 2 4.3E-05 44.5 2.6 75 101-186 5-80 (465)
102 cd00350 rubredoxin_like Rubred 74.3 2.2 4.8E-05 28.7 1.7 11 139-149 16-26 (33)
103 COG5222 Uncharacterized conser 73.9 1.9 4.1E-05 43.3 1.7 33 40-72 275-308 (427)
104 PF12678 zf-rbx1: RING-H2 zinc 73.8 3 6.6E-05 33.0 2.6 43 102-146 21-72 (73)
105 COG5627 MMS21 DNA repair prote 73.4 1.5 3.3E-05 42.6 0.9 35 38-72 188-223 (275)
106 KOG1002 Nucleotide excision re 73.3 1.4 3E-05 47.2 0.8 52 39-112 536-587 (791)
107 KOG1645 RING-finger-containing 71.8 2.3 4.9E-05 44.4 1.8 58 101-159 5-64 (463)
108 COG5540 RING-finger-containing 69.5 4.8 0.0001 40.6 3.5 49 100-150 323-371 (374)
109 KOG1814 Predicted E3 ubiquitin 69.1 2.1 4.7E-05 44.5 1.0 51 83-134 159-217 (445)
110 PF14446 Prok-RING_1: Prokaryo 69.1 4.2 9E-05 30.8 2.3 46 101-152 6-53 (54)
111 KOG0882 Cyclophilin-related pe 66.9 2.3 5E-05 44.9 0.7 66 338-404 88-157 (558)
112 smart00531 TFIIE Transcription 66.7 4 8.6E-05 36.6 2.1 41 98-154 97-137 (147)
113 COG5432 RAD18 RING-finger-cont 66.5 3.9 8.5E-05 41.0 2.2 49 98-152 23-71 (391)
114 COG5222 Uncharacterized conser 66.5 3.6 7.8E-05 41.3 1.9 48 101-156 275-322 (427)
115 TIGR00570 cdk7 CDK-activating 66.4 5.8 0.00012 40.1 3.4 52 40-91 4-61 (309)
116 KOG2042 Ubiquitin fusion degra 65.9 2.6 5.7E-05 48.2 1.0 61 36-96 867-928 (943)
117 cd00730 rubredoxin Rubredoxin; 65.6 2.8 6.1E-05 31.1 0.8 17 130-149 27-43 (50)
118 KOG2169 Zn-finger transcriptio 65.4 4.4 9.6E-05 44.8 2.6 103 52-160 251-365 (636)
119 PF14835 zf-RING_6: zf-RING of 64.9 2.2 4.9E-05 33.4 0.1 48 40-89 8-56 (65)
120 PF14634 zf-RING_5: zinc-RING 64.6 5.2 0.00011 28.2 2.0 30 41-70 1-33 (44)
121 PF12861 zf-Apc11: Anaphase-pr 64.4 7 0.00015 32.3 2.9 52 34-85 26-83 (85)
122 PF14353 CpXC: CpXC protein 62.6 7.5 0.00016 33.7 3.0 57 100-162 1-60 (128)
123 PF10915 DUF2709: Protein of u 61.5 3.2 7E-05 39.2 0.5 58 51-116 38-103 (238)
124 PHA02926 zinc finger-like prot 61.1 7.4 0.00016 37.7 2.9 34 39-72 170-212 (242)
125 KOG4739 Uncharacterized protei 60.8 3.2 6.9E-05 40.3 0.4 44 101-150 4-47 (233)
126 PRK06266 transcription initiat 60.1 5.1 0.00011 37.3 1.6 34 98-152 115-148 (178)
127 COG5175 MOT2 Transcriptional r 59.6 5.3 0.00011 40.9 1.7 57 98-156 13-69 (480)
128 KOG0824 Predicted E3 ubiquitin 57.2 5.7 0.00012 40.0 1.5 46 102-152 9-54 (324)
129 KOG2462 C2H2-type Zn-finger pr 56.9 10 0.00022 37.8 3.1 55 98-152 128-199 (279)
130 KOG4628 Predicted E3 ubiquitin 56.8 8.2 0.00018 39.7 2.6 62 85-148 212-275 (348)
131 PRK00969 hypothetical protein; 56.2 9.6 0.00021 40.9 3.0 35 347-381 365-401 (508)
132 TIGR00373 conserved hypothetic 54.4 8.4 0.00018 35.1 2.0 35 98-153 107-141 (158)
133 KOG0883 Cyclophilin type, U bo 54.4 6.5 0.00014 40.9 1.4 54 39-92 101-160 (518)
134 KOG4159 Predicted E3 ubiquitin 53.6 7.6 0.00017 40.6 1.8 43 37-79 82-124 (398)
135 KOG0825 PHD Zn-finger protein 53.1 4.3 9.2E-05 45.6 -0.2 51 101-154 124-174 (1134)
136 PF14446 Prok-RING_1: Prokaryo 52.6 8.4 0.00018 29.2 1.4 19 140-158 5-23 (54)
137 COG5152 Uncharacterized conser 51.9 8 0.00017 36.8 1.4 47 98-150 194-240 (259)
138 COG4070 Predicted peptidyl-pro 50.9 11 0.00024 39.3 2.4 23 359-381 377-399 (512)
139 COG1592 Rubrerythrin [Energy p 50.8 9.3 0.0002 35.3 1.7 10 140-149 149-158 (166)
140 KOG1940 Zn-finger protein [Gen 48.8 10 0.00022 37.8 1.8 55 92-148 150-204 (276)
141 PRK05452 anaerobic nitric oxid 48.3 16 0.00034 39.1 3.2 45 98-149 423-467 (479)
142 TIGR03268 methan_mark_3 putati 47.0 15 0.00033 39.3 2.8 34 347-380 362-397 (503)
143 COG5189 SFP1 Putative transcri 46.9 4.2 9.2E-05 41.2 -1.2 54 99-152 348-410 (423)
144 PF00301 Rubredoxin: Rubredoxi 45.6 5.4 0.00012 29.3 -0.6 17 130-149 27-43 (47)
145 KOG1703 Adaptor protein Enigma 44.7 17 0.00036 38.8 2.7 99 40-151 331-433 (479)
146 PF12903 DUF3830: Protein of u 44.5 24 0.00053 32.0 3.3 24 357-380 7-30 (147)
147 COG5152 Uncharacterized conser 44.0 8.1 0.00018 36.8 0.2 45 35-80 193-237 (259)
148 KOG4628 Predicted E3 ubiquitin 43.5 15 0.00032 37.9 2.0 42 40-81 230-275 (348)
149 KOG1002 Nucleotide excision re 42.8 13 0.00028 40.2 1.5 52 98-153 534-588 (791)
150 KOG0825 PHD Zn-finger protein 41.9 4 8.7E-05 45.8 -2.5 41 41-81 125-168 (1134)
151 PF09986 DUF2225: Uncharacteri 41.6 10 0.00022 36.2 0.5 56 100-159 5-67 (214)
152 KOG2879 Predicted E3 ubiquitin 41.1 28 0.00061 34.8 3.4 43 39-81 239-284 (298)
153 KOG2462 C2H2-type Zn-finger pr 40.5 26 0.00057 34.9 3.1 85 56-152 166-255 (279)
154 KOG2932 E3 ubiquitin ligase in 39.6 6.9 0.00015 39.6 -1.0 32 121-156 108-139 (389)
155 KOG0396 Uncharacterized conser 37.7 16 0.00036 37.7 1.3 52 36-87 320-382 (389)
156 PF04423 Rad50_zn_hook: Rad50 37.5 16 0.00036 26.9 0.9 23 129-153 11-33 (54)
157 KOG0802 E3 ubiquitin ligase [P 36.9 19 0.00042 39.0 1.8 47 35-81 287-338 (543)
158 KOG2593 Transcription initiati 36.7 20 0.00043 37.9 1.7 40 99-153 127-166 (436)
159 KOG3161 Predicted E3 ubiquitin 35.4 14 0.0003 40.9 0.3 56 101-165 12-67 (861)
160 KOG3113 Uncharacterized conser 35.2 33 0.00072 33.9 2.8 59 34-94 106-168 (293)
161 KOG1001 Helicase-like transcri 34.7 19 0.00041 40.3 1.3 52 101-157 455-506 (674)
162 COG5194 APC11 Component of SCF 33.2 25 0.00055 28.8 1.4 46 38-83 19-80 (88)
163 PHA02768 hypothetical protein; 32.4 21 0.00046 27.1 0.8 45 100-158 5-50 (55)
164 KOG0311 Predicted E3 ubiquitin 31.6 10 0.00022 39.0 -1.4 50 98-151 41-90 (381)
165 COG5540 RING-finger-containing 31.5 37 0.00079 34.5 2.5 44 40-83 324-371 (374)
166 PRK00464 nrdR transcriptional 31.3 25 0.00055 32.1 1.3 40 101-152 1-40 (154)
167 KOG1734 Predicted RING-contain 31.2 16 0.00035 36.4 0.0 52 100-151 224-281 (328)
168 KOG0802 E3 ubiquitin ligase [P 31.1 29 0.00062 37.7 1.9 61 100-162 291-352 (543)
169 PF06416 DUF1076: Protein of u 30.9 92 0.002 27.1 4.5 51 101-156 41-96 (113)
170 COG2093 DNA-directed RNA polym 28.8 35 0.00075 26.7 1.5 24 142-165 20-46 (64)
171 smart00280 KAZAL Kazal type se 28.1 57 0.0012 22.9 2.4 24 49-72 9-32 (46)
172 KOG2660 Locus-specific chromos 27.8 20 0.00043 36.5 -0.0 45 36-80 12-57 (331)
173 PF13894 zf-C2H2_4: C2H2-type 27.3 27 0.00058 20.2 0.5 12 101-112 1-12 (24)
174 KOG0804 Cytoplasmic Zn-finger 26.7 36 0.00077 36.2 1.6 42 102-147 177-218 (493)
175 PF07648 Kazal_2: Kazal-type s 25.4 47 0.001 22.4 1.6 21 51-71 7-27 (42)
176 PF00096 zf-C2H2: Zinc finger, 25.2 29 0.00064 20.5 0.4 12 101-112 1-12 (23)
177 KOG1571 Predicted E3 ubiquitin 24.8 47 0.001 34.3 2.0 39 102-149 307-345 (355)
178 KOG4159 Predicted E3 ubiquitin 24.3 48 0.001 34.8 2.0 49 98-152 82-130 (398)
179 KOG3002 Zn finger protein [Gen 24.2 65 0.0014 32.6 2.9 43 101-151 49-91 (299)
180 COG5243 HRD1 HRD ubiquitin lig 24.2 72 0.0016 33.3 3.2 44 40-83 288-344 (491)
181 COG5533 UBP5 Ubiquitin C-termi 23.8 39 0.00084 34.6 1.2 60 99-158 234-302 (415)
182 cd00729 rubredoxin_SM Rubredox 23.6 55 0.0012 22.1 1.6 9 141-149 19-27 (34)
183 COG5220 TFB3 Cdk activating ki 23.0 26 0.00056 34.4 -0.2 48 102-150 12-63 (314)
184 PF12171 zf-C2H2_jaz: Zinc-fin 23.0 46 0.001 20.8 1.0 12 101-112 2-13 (27)
185 PF12861 zf-Apc11: Anaphase-pr 22.4 83 0.0018 26.0 2.7 51 102-153 23-84 (85)
186 smart00064 FYVE Protein presen 21.7 44 0.00096 25.4 0.9 34 101-134 11-44 (68)
187 PF05605 zf-Di19: Drought indu 21.4 80 0.0017 23.2 2.2 20 51-73 5-24 (54)
188 PF14570 zf-RING_4: RING/Ubox 21.3 65 0.0014 23.8 1.7 48 103-151 1-48 (48)
189 PF10367 Vps39_2: Vacuolar sor 21.3 68 0.0015 26.1 2.0 33 34-66 73-107 (109)
190 KOG3993 Transcription factor ( 21.2 44 0.00096 35.3 1.0 65 67-151 229-306 (500)
191 PRK00420 hypothetical protein; 20.8 1E+02 0.0022 26.7 3.1 9 102-110 25-33 (112)
192 KOG2649 Zinc carboxypeptidase 20.6 87 0.0019 33.7 3.0 51 348-405 331-391 (500)
193 cd01327 KAZAL_PSTI Kazal-type 20.3 80 0.0017 22.5 1.9 20 50-69 9-28 (45)
194 PF09986 DUF2225: Uncharacteri 20.3 40 0.00087 32.1 0.5 17 139-155 4-20 (214)
No 1
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-102 Score=763.69 Aligned_cols=325 Identities=57% Similarity=0.947 Sum_probs=300.7
Q ss_pred CCCCcCCCCCceeeHHHHhhhcCCcccc-cccCCCCCCCCccccCCCCCCCCCeecCCCCEeeHhhHHHHHHhcCCCCCC
Q 015475 1 MGKKQHSKDRMFITKTEWATEWGGAKSK-EVRTPFKRLPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVT 79 (406)
Q Consensus 1 MGk~~hskdk~yiT~~E~~~~~gg~k~~-~~~~~~~~lpf~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~~~~~Pvt 79 (406)
|||+||||||||||++||+..|||++.. +.+..|++|||+||+|+++||++|||+.+|.+|+..+|++||+++|+||+|
T Consensus 1 MGKkQHqKDkmylT~tEw~~~~Ggkk~~~~n~~~FkrLP~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk~g~nP~t 80 (518)
T KOG0883|consen 1 MGKKQHQKDKMYLTTTEWKSIYGGKKDTGENRTQFKRLPFNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKKHGTNPIT 80 (518)
T ss_pred CCcccccccceEEeehhhhhhcCCCCCCcccccccccCChhhceeccccccCcccccCCcEEeeehhhHHHHHcCCCCCC
Confidence 9999999999999999999999999985 447899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccccccCCCCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEEec
Q 015475 80 GTPLKLEDLIPLTFHKNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQ 159 (406)
Q Consensus 80 g~~l~lkDLi~l~f~~n~~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~Lq 159 (406)
|++|..+|||+|+|++|++++|+|||++++|+.++|||||+++||||||+||++||+++|+|+||++++||+|.|||+||
T Consensus 81 G~kl~~~dLIkL~F~Kns~geyhcPvlfk~FT~~sHIvAv~TTGNvy~~eai~~LNiK~knwkdLltdepFtR~DiItiQ 160 (518)
T KOG0883|consen 81 GQKLDGKDLIKLKFHKNSEGEYHCPVLFKVFTRFSHIVAVRTTGNVYSWEAIEELNIKTKNWKDLLTDEPFTRADIITIQ 160 (518)
T ss_pred CCccccccceeeeeccCCCCcccCceeeeeecccceEEEEEecCceeeHHHHHHhCcchhhHHHhhccCCcchhceeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhhhccchhhhcCcccChHHHhhhcCCCCc-cc-ccchhHHHHHHHhccccccchhhcCCCCchhHHHHHHHHH
Q 015475 160 NPNALDTKVTLEFDHVKKGLKVDDEELRKMESDPTY-NI-NVAGDIKQMLQELGTEKGQETALLGGGGSKAQKERAAALA 237 (406)
Q Consensus 160 dp~~~~~~~~~~f~hvk~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 237 (406)
||++++.+++++|+|||+++++.++++++++.||.+ .+ ++|-+++.+|.+|.+++.. .
T Consensus 161 dP~~lek~~~~~F~hvk~~lk~~~eeek~~~~dpa~~~~k~~n~e~ks~l~el~k~~~p---------~----------- 220 (518)
T KOG0883|consen 161 DPNNLEKFNMSDFYHVKKNLKTADEEEKKAKKDPALGYIKAMNLETKSTLPELSKEYQP---------K----------- 220 (518)
T ss_pred CcchhhccchhhHHHHhcccccCcHHHHHhhcCchhhhhhhcchhhhhhhHHHhhhhcc---------c-----------
Confidence 999999999999999999999999999999999994 44 7888999999999987641 0
Q ss_pred HHHHHhhhhhhccccccccccccccchhhhhhccccccCCccchhcccCchHHHHHHHhhhhcCCCcccccccccccccc
Q 015475 238 AILAARSRIEENSKSDANGEAKATKAFSIVDAASASVHGRSASAAKTASSDKTAARIAMHMAGERTPVNAKLVKSRYTTG 317 (406)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~stg 317 (406)
... +++ + +..+ +++++|+||||
T Consensus 221 ~~~--------------------------------------a~t----------------~-~~~a---D~~naahyStG 242 (518)
T KOG0883|consen 221 KSI--------------------------------------AST----------------M-KRSA---DKINAAHYSTG 242 (518)
T ss_pred hhh--------------------------------------hhh----------------c-cccc---hhhhhhhcccc
Confidence 000 000 0 0112 46789999999
Q ss_pred cccccccccccCCCCcchhh-----hhhhhcCCCCccEEEEEecceeEEEEEcCCCChhHHHHHHHHHhcCccCCceeee
Q 015475 318 AASRSFTSTAYDPVTTNEFE-----YIKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHR 392 (406)
Q Consensus 318 ~~a~SftSt~~~p~t~~~~~-----~~~~~~~~k~~~~v~l~T~~G~i~ieL~~d~aP~t~~NF~~L~~~g~Ydgt~FhR 392 (406)
++|||||||+|+|+|.++++ .+++.|+ +++|||||+|+.|+|+||||||.+|++|+||++||++|||+|++|||
T Consensus 243 ~vaasfTSTam~PvT~neaaiid~d~~ry~rv-Kkkgyvrl~Tn~G~lNlELhcd~~P~aceNFI~lc~~gYYnnt~FHR 321 (518)
T KOG0883|consen 243 AVAASFTSTAMTPVTKNEAAIIDEDDVRYTRV-KKKGYVRLVTNHGPLNLELHCDYAPRACENFITLCKNGYYNNTIFHR 321 (518)
T ss_pred ceeceeccceeeecccchhhhccchhhhhccc-cccceEEEeccCCceeeEeecCcchHHHHHHHHHHhcccccchHHHH
Confidence 99999999999999999988 3466666 99999999999999999999999999999999999999999999999
Q ss_pred ecCCeeEeecCCC
Q 015475 393 SIRKRWRIYMGEA 405 (406)
Q Consensus 393 vi~~f~iq~gGDP 405 (406)
.|+||||| ||||
T Consensus 322 sIrnFmiQ-GGDP 333 (518)
T KOG0883|consen 322 SIRNFMIQ-GGDP 333 (518)
T ss_pred HHHHHeee-CCCC
Confidence 99999998 9999
No 2
>PF04641 Rtf2: Rtf2 RING-finger
Probab=100.00 E-value=3.9e-36 Score=291.83 Aligned_cols=143 Identities=31% Similarity=0.492 Sum_probs=126.5
Q ss_pred CCCCCCCccccCCCCCCCCCee-cCCCCEeeHhhHHHHHHhcCC---CCC-CCCCCCCCCccccccccCC----------
Q 015475 33 PFKRLPFYCCALTFTPFEDPVC-TADGSVFELMSITPYIRKYGK---HPV-TGTPLKLEDLIPLTFHKNA---------- 97 (406)
Q Consensus 33 ~~~~lpf~~C~LSl~Pl~~PV~-t~~G~lf~ke~Il~~Ll~~~~---~Pv-tg~~l~lkDLi~l~f~~n~---------- 97 (406)
.....+|++|+||++||+.||| +..|+|||+++||+||++++. .|. ..|+.+|+||++|+|+.|+
T Consensus 28 ~~~~~~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~~~~~~~~~~~~hI~~LKDl~~l~~~~n~~~~~~~~~~~ 107 (260)
T PF04641_consen 28 EEREARWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDKKKNKDLPKTFSHIKSLKDLVELKFTKNPSYKEEDKSSG 107 (260)
T ss_pred HHhhCCcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhcCcCCCCccccccccCccceeeEEeEecCcccccccccc
Confidence 5678999999999999999985 599999999999999999864 343 4689999999999999984
Q ss_pred ---CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEEecCCCCcchhhhccchh
Q 015475 98 ---EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQNPNALDTKVTLEFDH 174 (406)
Q Consensus 98 ---~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~Lqdp~~~~~~~~~~f~h 174 (406)
.+.|+||||+++|+++++|||||+||||||++||+++. +.+.||+|++||++.|||+||+|..........+.+
T Consensus 108 ~~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k---~~~~Cp~c~~~f~~~DiI~Lnp~~ee~~~l~~~~~~ 184 (260)
T PF04641_consen 108 DNSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK---KSKKCPVCGKPFTEEDIIPLNPPEEELEKLRERMEE 184 (260)
T ss_pred ccCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc---ccccccccCCccccCCEEEecCCccHHHHHHHHHHH
Confidence 67899999999999999999999999999999999995 578999999999999999999999844455556666
Q ss_pred hhcC
Q 015475 175 VKKG 178 (406)
Q Consensus 175 vk~~ 178 (406)
++..
T Consensus 185 ~~~~ 188 (260)
T PF04641_consen 185 RKAK 188 (260)
T ss_pred HHhh
Confidence 6654
No 3
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.4e-34 Score=269.39 Aligned_cols=156 Identities=31% Similarity=0.518 Sum_probs=140.4
Q ss_pred cCCCCC---ceeeHHHHhhh----cCCcccccccCCCCCCCCccccCCCCCCCCCeecCCCCEeeHhhHHHHHHhc----
Q 015475 5 QHSKDR---MFITKTEWATE----WGGAKSKEVRTPFKRLPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKY---- 73 (406)
Q Consensus 5 ~hskdk---~yiT~~E~~~~----~gg~k~~~~~~~~~~lpf~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~~---- 73 (406)
||+||. .|+||+|..++ +.|....|++ .++..||+||+|+|||+++|||+++|||||+|+||+||+.+
T Consensus 3 RH~kN~ta~avyTY~EkkkdaaasGYGTq~~RLg-rDsiK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ilaqKke~ 81 (303)
T KOG3039|consen 3 RHGKNCTAGAVYTYHEKKKDAAASGYGTQRERLG-RDSIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILAQKKEI 81 (303)
T ss_pred ccccCCccceeEeehhhcchhhhcCcchhhhhhc-ccccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHHHHHHH
Confidence 688877 69999999984 3455555777 78999999999999999999999999999999999999875
Q ss_pred --------------------------------------------------------------------------------
Q 015475 74 -------------------------------------------------------------------------------- 73 (406)
Q Consensus 74 -------------------------------------------------------------------------------- 73 (406)
T Consensus 82 arrlkayekqrr~eed~e~qra~~q~~~~~~eF~~~e~~~~s~al~r~~~~~~ae~~a~~~~~~~~~~sn~~~d~~k~lp 161 (303)
T KOG3039|consen 82 ARRLKAYEKQRRAEEDKEEQRAMSQKARRLDEFDQQESTPESSALPRNPDTNSAEDAASFHGANSVSTSNMEEDKLKTLP 161 (303)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhHHHHHHHHhhccccccccccCCCCcchhhhccCccccCCccccCcccccccccc
Confidence
Q ss_pred ----------------------CCCCCCCCCCCCCCccccccccCC-----------CCccccccccccccCceeEEEEc
Q 015475 74 ----------------------GKHPVTGTPLKLEDLIPLTFHKNA-----------EGEYHCPVLNKVFTEFTHIVAVK 120 (406)
Q Consensus 74 ----------------------~~~Pvtg~~l~lkDLi~l~f~~n~-----------~~~~~CPvt~k~f~~~t~~v~i~ 120 (406)
-.||+.|+||.|+||++|+|+... ...|+||||..++++.+.+++++
T Consensus 162 sFWlPs~tP~A~atklekP~~~v~CP~s~kplklkdL~~VkFT~l~s~~~et~l~a~s~ryiCpvtrd~LtNt~~ca~Lr 241 (303)
T KOG3039|consen 162 SFWLPSLTPTAAATKLEKPSTTVVCPVSGKPLKLKDLFAVKFTPLNSEETETKLIAASKRYICPVTRDTLTNTTPCAVLR 241 (303)
T ss_pred ceecCccCchhhhhcccCCCceeeccCCCCccchhhcceeeeeecCCchhhhhhhhhccceecccchhhhcCccceEEec
Confidence 038999999999999999999854 24699999999999999999999
Q ss_pred cCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEEecCCCC
Q 015475 121 TTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQNPNA 163 (406)
Q Consensus 121 ~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~Lqdp~~ 163 (406)
+||+||+++|+++|.. +++.|||||+|+++.|||.||....
T Consensus 242 ~sg~Vv~~ecvEklir--~D~v~pv~d~plkdrdiI~LqrGGT 282 (303)
T KOG3039|consen 242 PSGHVVTKECVEKLIR--KDMVDPVTDKPLKDRDIIGLQRGGT 282 (303)
T ss_pred cCCcEeeHHHHHHhcc--ccccccCCCCcCcccceEeeecccc
Confidence 9999999999999985 7889999999999999999998764
No 4
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.92 E-value=2.6e-25 Score=210.16 Aligned_cols=120 Identities=21% Similarity=0.391 Sum_probs=110.0
Q ss_pred CCCCccccCCCCCCCCCeec-CCCCEeeHhhHHHHHHhcCCCCCC-CCCCCCCCccccccccCC--------------CC
Q 015475 36 RLPFYCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKYGKHPVT-GTPLKLEDLIPLTFHKNA--------------EG 99 (406)
Q Consensus 36 ~lpf~~C~LSl~Pl~~PV~t-~~G~lf~ke~Il~~Ll~~~~~Pvt-g~~l~lkDLi~l~f~~n~--------------~~ 99 (406)
...|.+|+||.+||..||+. ..|+||||+.||++||....-|-+ .|+.++||+++|+++.|+ ..
T Consensus 31 ~sqw~~CaLtqepL~~Piv~c~lGrLYNKe~vi~~LL~Ks~~pksaShIKslKDvveLklt~n~~~~gD~~~~~~D~~~a 110 (293)
T KOG3113|consen 31 VSQWRNCALTQEPLRRPIVACGLGRLYNKESVIEFLLDKSSLPKSASHIKSLKDVVELKLTLNPAFEGDKGNKHDDTQRA 110 (293)
T ss_pred HHHHhhcccccCccccceeeehhhccccHHHHHHHHHhcccCCcchhhhcchhhHhheecccCcccccccCccccccccc
Confidence 34599999999999999997 899999999999999998766665 799999999999999984 23
Q ss_pred ccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEEec
Q 015475 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQ 159 (406)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~Lq 159 (406)
+|+|||++.+||+..+|++||+|||||+++|++++. .-.|++|+.+|..+|+|+|+
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik----as~C~~C~a~y~~~dvIvlN 166 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK----ASVCHVCGAAYQEDDVIVLN 166 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHhh----hccccccCCcccccCeEeeC
Confidence 799999999999999999999999999999999996 44899999999999999887
No 5
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=3.8e-19 Score=160.74 Aligned_cols=56 Identities=38% Similarity=0.627 Sum_probs=53.3
Q ss_pred EEEEEecceeEEEEEcCCCChhHHHHHHHHHhcCccCCceeeeecCCeeEeecCCCC
Q 015475 350 YVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRKRWRIYMGEAL 406 (406)
Q Consensus 350 ~v~l~T~~G~i~ieL~~d~aP~t~~NF~~L~~~g~Ydgt~FhRvi~~f~iq~gGDP~ 406 (406)
.|.|+|+.|+|+||||++.||+||+||+.||+.|||||+.|||||++|||| ||||.
T Consensus 1 ~v~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~Ydg~~FHRVi~~FmiQ-gGd~~ 56 (158)
T COG0652 1 TVILETNKGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQ-GGDPT 56 (158)
T ss_pred CceeeccCCCEEEEECCCcCcHHHHHHHHHHHcCCCCCceEEEeecCceee-cCCCC
Confidence 378999999999999999999999999999999999999999999999997 89983
No 6
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=5.1e-18 Score=146.47 Aligned_cols=58 Identities=41% Similarity=0.732 Sum_probs=56.2
Q ss_pred CccEEEEEecceeEEEEEcCCCChhHHHHHHHHHhcCccCCceeeeecCCeeEeecCCC
Q 015475 347 KKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 347 ~~~~v~l~T~~G~i~ieL~~d~aP~t~~NF~~L~~~g~Ydgt~FhRvi~~f~iq~gGDP 405 (406)
...+|.|+|++|.|++|||-..||+||.||..|++.|||||++|||+|++|||| ||||
T Consensus 8 q~~~V~LeTsmG~i~~ElY~kHaP~TC~NF~eLarrgYYn~v~FHRii~DFmiQ-GGDP 65 (164)
T KOG0881|consen 8 QPPNVTLETSMGKITLELYWKHAPRTCQNFAELARRGYYNGVIFHRIIKDFMIQ-GGDP 65 (164)
T ss_pred CCCeEEEeecccceehhhhhhcCcHHHHHHHHHHhcccccceeeeehhhhheee-cCCC
Confidence 467999999999999999999999999999999999999999999999999988 9999
No 7
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=99.67 E-value=7.1e-17 Score=147.15 Aligned_cols=54 Identities=37% Similarity=0.661 Sum_probs=51.9
Q ss_pred EEEEecceeEEEEEcCCCChhHHHHHHHHHhcCccCCceeeeecCCeeEeecCCC
Q 015475 351 VQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 351 v~l~T~~G~i~ieL~~d~aP~t~~NF~~L~~~g~Ydgt~FhRvi~~f~iq~gGDP 405 (406)
|+|+|+.|+|+|+||++.||+||+||+.||+.|||||+.||||+++|||| |||+
T Consensus 2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQ-gGd~ 55 (164)
T PRK10791 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQ-GGGF 55 (164)
T ss_pred EEEEEccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEecCcEEE-eCCc
Confidence 78999999999999999999999999999999999999999999999988 7775
No 8
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=99.67 E-value=6.7e-17 Score=146.45 Aligned_cols=55 Identities=60% Similarity=1.177 Sum_probs=53.3
Q ss_pred EEEEEecceeEEEEEcCCCChhHHHHHHHHHhcCccCCceeeeecCCeeEeecCCC
Q 015475 350 YVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 350 ~v~l~T~~G~i~ieL~~d~aP~t~~NF~~L~~~g~Ydgt~FhRvi~~f~iq~gGDP 405 (406)
||+|+|+.|+|+||||++.||+||+||+.||+.|||+|+.||||+++|||| ||||
T Consensus 1 ~v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~~~iq-~Gd~ 55 (159)
T cd01923 1 YVRLHTNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQ-GGDP 55 (159)
T ss_pred CEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCccCCcEEEEEeCCcEEE-eccc
Confidence 689999999999999999999999999999999999999999999999988 8887
No 9
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=99.67 E-value=9.8e-17 Score=147.05 Aligned_cols=60 Identities=42% Similarity=0.763 Sum_probs=57.0
Q ss_pred CCCccEEEEEecceeEEEEEcCCCChhHHHHHHHHHhcCccCCceeeeecCCeeEeecCCC
Q 015475 345 PKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 345 ~k~~~~v~l~T~~G~i~ieL~~d~aP~t~~NF~~L~~~g~Ydgt~FhRvi~~f~iq~gGDP 405 (406)
|...+.|.|+|+.|+|+||||++.+|+||+||+.||+.|||+|+.||||+++|||| ||||
T Consensus 2 ~~~~~~v~i~Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~~Y~~~~f~Rvi~~f~iQ-gGd~ 61 (171)
T cd01925 2 PPTTGKVILKTTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQ-GGDP 61 (171)
T ss_pred CCcccEEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCCCCCCEEEEEcCCcEEE-cccc
Confidence 45678999999999999999999999999999999999999999999999999987 8887
No 10
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=99.67 E-value=9.9e-17 Score=149.52 Aligned_cols=59 Identities=32% Similarity=0.505 Sum_probs=55.3
Q ss_pred CCccEEEEEecceeEEEEEcCCCChhHHHHHHHHHhcCccCCceeeeecCCeeEeecCCC
Q 015475 346 KKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 346 k~~~~v~l~T~~G~i~ieL~~d~aP~t~~NF~~L~~~g~Ydgt~FhRvi~~f~iq~gGDP 405 (406)
.....|+|+|+.|+|+||||++.||+||+||+.||+.|||||+.|||||++|||| ||||
T Consensus 26 ~~~~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQ-gG~~ 84 (190)
T PRK10903 26 KGDPHVLLTTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQ-GGGF 84 (190)
T ss_pred CCCcEEEEEeccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEeCCceEE-eCCc
Confidence 3466799999999999999999999999999999999999999999999999988 7776
No 11
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=99.65 E-value=1.5e-16 Score=143.34 Aligned_cols=55 Identities=51% Similarity=0.992 Sum_probs=53.1
Q ss_pred EEEEEecceeEEEEEcCCCChhHHHHHHHHHhcCccCCceeeeecCCeeEeecCCC
Q 015475 350 YVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 350 ~v~l~T~~G~i~ieL~~d~aP~t~~NF~~L~~~g~Ydgt~FhRvi~~f~iq~gGDP 405 (406)
.|+|+|+.|+|+||||++.||+||+||+.||+.|||+|+.||||+++|||| ||||
T Consensus 2 ~v~l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~f~iq-~Gd~ 56 (153)
T cd01928 2 SVTLHTNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQ-TGDP 56 (153)
T ss_pred EEEEEEccccEEEEEcCCCCcHHHHHHHHHHhcCccCCcEEEEeCCCCEEE-cccc
Confidence 489999999999999999999999999999999999999999999999987 8887
No 12
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=99.63 E-value=2.4e-16 Score=141.29 Aligned_cols=53 Identities=40% Similarity=0.688 Sum_probs=50.8
Q ss_pred EEEecceeEEEEEcCCCChhHHHHHHHHHhcCccCCceeeeecCCeeEeecCCC
Q 015475 352 QLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 352 ~l~T~~G~i~ieL~~d~aP~t~~NF~~L~~~g~Ydgt~FhRvi~~f~iq~gGDP 405 (406)
.|+|+.|+|+||||.+.||+||+||+.||+.|||+|+.||||++||||| ||||
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq-~Gd~ 53 (148)
T cd01927 1 IIHTTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQ-TGDP 53 (148)
T ss_pred CeEeccccEEEEEeCCCCcHHHHHHHHHhhcCCcCCcEEEEEcCCcEEE-eccc
Confidence 3789999999999999999999999999999999999999999999987 8887
No 13
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=99.62 E-value=3.5e-16 Score=141.25 Aligned_cols=53 Identities=32% Similarity=0.539 Sum_probs=50.5
Q ss_pred EEEecceeEEEEEcCCCChhHHHHHHHHHhcCccCCceeeeecCCeeEeecCCC
Q 015475 352 QLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 352 ~l~T~~G~i~ieL~~d~aP~t~~NF~~L~~~g~Ydgt~FhRvi~~f~iq~gGDP 405 (406)
.|+|+.|+|+||||++.||+||+||+.||+.|||||+.|||||++|||| ||||
T Consensus 1 ~l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQ-~Gd~ 53 (155)
T cd01920 1 EFQTSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQ-GGGF 53 (155)
T ss_pred CcEecceeEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCcEEE-eCCC
Confidence 3789999999999999999999999999999999999999999999988 7786
No 14
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=99.62 E-value=4.6e-16 Score=139.16 Aligned_cols=52 Identities=42% Similarity=0.805 Sum_probs=50.2
Q ss_pred EEecceeEEEEEcCCCChhHHHHHHHHHhcCccCCceeeeecCCeeEeecCCC
Q 015475 353 LHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 353 l~T~~G~i~ieL~~d~aP~t~~NF~~L~~~g~Ydgt~FhRvi~~f~iq~gGDP 405 (406)
|+|+.|+|+||||.+.||+||+||+.||+.|||+++.||||+++|||| ||||
T Consensus 2 i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq-~Gd~ 53 (146)
T cd01922 2 LETTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQ-GGDP 53 (146)
T ss_pred eEeccccEEEEEcCCCCcHHHHHHHHHHhcCCcCCcEEEEEcCCcEEE-eccc
Confidence 789999999999999999999999999999999999999999999988 7886
No 15
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.8e-15 Score=149.10 Aligned_cols=60 Identities=42% Similarity=0.774 Sum_probs=57.6
Q ss_pred CCCccEEEEEecceeEEEEEcCCCChhHHHHHHHHHhcCccCCceeeeecCCeeEeecCCC
Q 015475 345 PKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 345 ~k~~~~v~l~T~~G~i~ieL~~d~aP~t~~NF~~L~~~g~Ydgt~FhRvi~~f~iq~gGDP 405 (406)
|...|.|.|.|+.|+|.||||+..+|++|.||++||-.|||+|+.|||++|||.+| ||||
T Consensus 9 P~ttgkvil~TT~G~I~iELW~kE~P~acrnFiqKOGegyy~nt~fhrlvp~f~~Q-ggdp 68 (439)
T KOG0885|consen 9 PPTTGKVILKTTKGDIDIELWAKECPKACRNFIQLCLEGYYDNTEFHRLVPGFLVQ-GGDP 68 (439)
T ss_pred CCccceEEEEeccCceeeeehhhhhhHHHHHHHHHHHhccccCceeeeeccchhcc-cCCC
Confidence 46789999999999999999999999999999999999999999999999999987 9998
No 16
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=2.5e-15 Score=152.53 Aligned_cols=58 Identities=36% Similarity=0.598 Sum_probs=55.1
Q ss_pred ccEEEEEecceeEEEEEcCCCChhHHHHHHHHHhcCccCCceeeeecCCeeEeecCCCC
Q 015475 348 KGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRKRWRIYMGEAL 406 (406)
Q Consensus 348 ~~~v~l~T~~G~i~ieL~~d~aP~t~~NF~~L~~~g~Ydgt~FhRvi~~f~iq~gGDP~ 406 (406)
..-+.|+|++|+|.|.||++.+|+||+||-.+|++|||||.+|||||+||||| +|||+
T Consensus 404 ~~~aiihtt~gdi~~kl~p~ecpktvenf~th~rngyy~~~~fhriik~fmiq-tgdp~ 461 (558)
T KOG0882|consen 404 GKAAIIHTTQGDIHIKLYPEECPKTVENFTTHSRNGYYDNHTFHRIIKGFMIQ-TGDPL 461 (558)
T ss_pred ccceEEEecccceEEEecccccchhhhhhhccccCccccCcchHHhhhhheee-cCCCC
Confidence 34589999999999999999999999999999999999999999999999998 99996
No 17
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=7.4e-15 Score=126.34 Aligned_cols=55 Identities=47% Similarity=0.953 Sum_probs=53.1
Q ss_pred EEEEEecceeEEEEEcCCCChhHHHHHHHHHhcCccCCceeeeecCCeeEeecCCC
Q 015475 350 YVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 350 ~v~l~T~~G~i~ieL~~d~aP~t~~NF~~L~~~g~Ydgt~FhRvi~~f~iq~gGDP 405 (406)
.|.|+|+.|+|.|||||+.+|+||+||+.||...||+|++|||.|++||+| +|||
T Consensus 2 svtlht~~gdikiev~~e~tpktce~~l~~~~~~~~n~~~~~~~~~~f~v~-~~~~ 56 (161)
T KOG0884|consen 2 SVTLHTDVGDIKIEVFCERTPKTCENFLALCASDYYNGCIFHRNIKGFMVQ-TGDP 56 (161)
T ss_pred eEEEeeccCcEEEEEEecCChhHHHHHHHHhhhhhccceeecCCCCCcEEE-eCCC
Confidence 589999999999999999999999999999999999999999999999977 8888
No 18
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=99.48 E-value=4.3e-14 Score=125.20 Aligned_cols=52 Identities=40% Similarity=0.683 Sum_probs=50.2
Q ss_pred EEecceeEEEEEcCCCChhHHHHHHHHHhcCccCCceeeeecCCeeEeecCCC
Q 015475 353 LHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 353 l~T~~G~i~ieL~~d~aP~t~~NF~~L~~~g~Ydgt~FhRvi~~f~iq~gGDP 405 (406)
|+|+.|+|+||||.+.+|++|+||+.||+.+||+|+.|||++++|+|| ||||
T Consensus 2 ~~T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~Y~~~~f~rv~~~~~iq-~Gd~ 53 (146)
T cd00317 2 LDTTKGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQ-GGDP 53 (146)
T ss_pred eEeccCcEEEEEcCCCChHHHHHHHHHHhcCCcCCCEEEEEeCCCeEE-ECCC
Confidence 789999999999999999999999999999999999999999999987 8887
No 19
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=99.46 E-value=9.6e-14 Score=124.03 Aligned_cols=55 Identities=38% Similarity=0.736 Sum_probs=52.6
Q ss_pred EEEEEec-ceeEEEEEcCCCChhHHHHHHHHHhcCccCCceeeeecCCeeEeecCCC
Q 015475 350 YVQLHTT-HGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 350 ~v~l~T~-~G~i~ieL~~d~aP~t~~NF~~L~~~g~Ydgt~FhRvi~~f~iq~gGDP 405 (406)
+|.|+|+ .|+|+||||.+.||.+|+||+.||+.|+|+|+.|||++++++|| ||||
T Consensus 1 ~~~i~t~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~ri~~~~~i~-~G~~ 56 (155)
T PF00160_consen 1 FVDIETSGLGRIVIELFGDEAPKTVENFLRLCTSGFYDGTKFHRIIPNFVIQ-GGDP 56 (155)
T ss_dssp EEEEEETTEEEEEEEEETTTSHHHHHHHHHHHHTTSSTTEBEEEEETTTEEE-ESST
T ss_pred CEEEEeCCccCEEEEEeCCCCcHHHHhhehhhcccccCCceeecccccceee-eeec
Confidence 6899997 99999999999999999999999999999999999999999987 8886
No 20
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=99.41 E-value=3.1e-13 Score=122.96 Aligned_cols=55 Identities=33% Similarity=0.659 Sum_probs=49.4
Q ss_pred EEEEE---ecceeEEEEEcCCCChhHHHHHHHHHh--cC------ccCCceeeeecCCeeEeecCCC
Q 015475 350 YVQLH---TTHGDLNIELHCDITPRSCENFITLCE--RG------YYNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 350 ~v~l~---T~~G~i~ieL~~d~aP~t~~NF~~L~~--~g------~Ydgt~FhRvi~~f~iq~gGDP 405 (406)
|+.|. ++.|+|+||||.+.||+||+||+.||+ .| ||+++.||||+++|||| ||||
T Consensus 4 ~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq-~Gd~ 69 (164)
T cd01926 4 FFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQ-GGDF 69 (164)
T ss_pred EEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEE-cCCc
Confidence 55555 479999999999999999999999997 46 89999999999999988 8886
No 21
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=99.40 E-value=5.1e-13 Score=124.22 Aligned_cols=49 Identities=37% Similarity=0.722 Sum_probs=45.0
Q ss_pred cceeEEEEEcCCCChhHHHHHHHHHhc-----Cc---cCCceeeeecCCeeEeecCCC
Q 015475 356 THGDLNIELHCDITPRSCENFITLCER-----GY---YNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 356 ~~G~i~ieL~~d~aP~t~~NF~~L~~~-----g~---Ydgt~FhRvi~~f~iq~gGDP 405 (406)
+.|+|+||||.+.+|+||+||+.||.. |+ |+++.||||+++|||| ||||
T Consensus 31 ~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iq-gGd~ 87 (186)
T PLN03149 31 PAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQ-GGDF 87 (186)
T ss_pred ccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEE-cCCc
Confidence 579999999999999999999999964 34 9999999999999988 8886
No 22
>PTZ00060 cyclophilin; Provisional
Probab=99.40 E-value=4.5e-13 Score=124.27 Aligned_cols=50 Identities=36% Similarity=0.585 Sum_probs=46.2
Q ss_pred ecceeEEEEEcCCCChhHHHHHHHHHh---------cCccCCceeeeecCCeeEeecCCC
Q 015475 355 TTHGDLNIELHCDITPRSCENFITLCE---------RGYYNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 355 T~~G~i~ieL~~d~aP~t~~NF~~L~~---------~g~Ydgt~FhRvi~~f~iq~gGDP 405 (406)
++.|+|+||||.+.||+||+||+.||+ .+||+|+.||||+|+|||| ||||
T Consensus 27 ~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iq-gGd~ 85 (183)
T PTZ00060 27 APAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQ-GGDI 85 (183)
T ss_pred EeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEE-eCCc
Confidence 367999999999999999999999996 5699999999999999987 8886
No 23
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2.2e-13 Score=135.87 Aligned_cols=48 Identities=38% Similarity=0.717 Sum_probs=44.0
Q ss_pred cceeEEEEEcCCCChhHHHHHHHHHh--cC---------ccCCceeeeecCCeeEeecCC
Q 015475 356 THGDLNIELHCDITPRSCENFITLCE--RG---------YYNGVAFHRSIRKRWRIYMGE 404 (406)
Q Consensus 356 ~~G~i~ieL~~d~aP~t~~NF~~L~~--~g---------~Ydgt~FhRvi~~f~iq~gGD 404 (406)
..|+|+||||.|.||+||+||+.||. .| .|.|+.|||||++|||| |||
T Consensus 21 ~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQ-gGD 79 (372)
T KOG0546|consen 21 PAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQ-GGD 79 (372)
T ss_pred ccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceee-ccc
Confidence 57999999999999999999999994 44 39999999999999998 888
No 24
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.1e-12 Score=121.24 Aligned_cols=48 Identities=35% Similarity=0.634 Sum_probs=44.2
Q ss_pred cceeEEEEEcCCCChhHHHHHHHHHh---cCc-cCCceeeeecCCeeEeecCC
Q 015475 356 THGDLNIELHCDITPRSCENFITLCE---RGY-YNGVAFHRSIRKRWRIYMGE 404 (406)
Q Consensus 356 ~~G~i~ieL~~d~aP~t~~NF~~L~~---~g~-Ydgt~FhRvi~~f~iq~gGD 404 (406)
..|+|+|.||+..+|+||+||++||. +|| |.|+.||||||||||| |||
T Consensus 52 ~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQ-GGd 103 (217)
T KOG0880|consen 52 PVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQ-GGD 103 (217)
T ss_pred eccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceee-cCc
Confidence 56899999999999999999999996 455 9999999999999998 887
No 25
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2.5e-12 Score=112.54 Aligned_cols=49 Identities=37% Similarity=0.693 Sum_probs=44.7
Q ss_pred ecceeEEEEEcCCCChhHHHHHHHHHhcCc--------cCCceeeeecCCeeEeecCC
Q 015475 355 TTHGDLNIELHCDITPRSCENFITLCERGY--------YNGVAFHRSIRKRWRIYMGE 404 (406)
Q Consensus 355 T~~G~i~ieL~~d~aP~t~~NF~~L~~~g~--------Ydgt~FhRvi~~f~iq~gGD 404 (406)
+..|+|.||||.|.+|+|++||++.|...| |.++.|||||++|||| |||
T Consensus 22 ~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQ-gGD 78 (177)
T KOG0879|consen 22 RPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQ-GGD 78 (177)
T ss_pred EEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheec-cCc
Confidence 467899999999999999999999996544 9999999999999998 887
No 26
>PTZ00221 cyclophilin; Provisional
Probab=99.23 E-value=1.5e-11 Score=118.97 Aligned_cols=58 Identities=28% Similarity=0.355 Sum_probs=48.8
Q ss_pred CccEEEEEec-----ceeEEEEEcCCCChhHHHHHHHHHhcC-----------ccCCceeeeecCC-eeEeecCCC
Q 015475 347 KKGYVQLHTT-----HGDLNIELHCDITPRSCENFITLCERG-----------YYNGVAFHRSIRK-RWRIYMGEA 405 (406)
Q Consensus 347 ~~~~v~l~T~-----~G~i~ieL~~d~aP~t~~NF~~L~~~g-----------~Ydgt~FhRvi~~-f~iq~gGDP 405 (406)
....|.|.++ .|+|+||||.+.||+||+||+.||... +|+|+.||||+++ |||| ||||
T Consensus 51 ~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iq-gGD~ 125 (249)
T PTZ00221 51 NSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIV-LGEL 125 (249)
T ss_pred CCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEE-eCCC
Confidence 3556777766 567999999999999999999999621 3999999999986 8987 7887
No 27
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.12 E-value=4e-11 Score=91.40 Aligned_cols=58 Identities=36% Similarity=0.657 Sum_probs=54.2
Q ss_pred ccccCCCCCCCCCeecCCCCEeeHhhHHHHHHhcCCCCCCCCCCCCCCccccccccCC
Q 015475 40 YCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNA 97 (406)
Q Consensus 40 ~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDLi~l~f~~n~ 97 (406)
..|+||++++.+||+++.||+|++++|.+||..++.||++|++++.+||+++...++.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~~ 59 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKSA 59 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHHH
Confidence 5799999999999999999999999999999999999999999999999998776653
No 28
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.96 E-value=1.1e-10 Score=92.64 Aligned_cols=61 Identities=31% Similarity=0.479 Sum_probs=50.0
Q ss_pred CCCccccCCCCCCCCCeecCCCCEeeHhhHHHHHHh-cCCCCCCCCCCCCCCccccccccCC
Q 015475 37 LPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRK-YGKHPVTGTPLKLEDLIPLTFHKNA 97 (406)
Q Consensus 37 lpf~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~-~~~~Pvtg~~l~lkDLi~l~f~~n~ 97 (406)
.+.++|+||+..|.+||++++|++||+.+|..||.. ++.||+|+.+++..||+++.-.++.
T Consensus 2 P~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~ 63 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSA 63 (73)
T ss_dssp SGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHH
T ss_pred CcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHH
Confidence 347899999999999999999999999999999999 7899999999999999998766553
No 29
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=4.3e-10 Score=105.87 Aligned_cols=49 Identities=39% Similarity=0.695 Sum_probs=45.5
Q ss_pred ecceeEEEEEcCCCChhHHHHHHHHH--hcCc-cCCceeeeecCCeeEeecCC
Q 015475 355 TTHGDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRKRWRIYMGE 404 (406)
Q Consensus 355 T~~G~i~ieL~~d~aP~t~~NF~~L~--~~g~-Ydgt~FhRvi~~f~iq~gGD 404 (406)
-..|+|+++|..|.+|+|++||..|| +.|| |.|++|||+||.||+| |||
T Consensus 148 ~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcq-ggd 199 (298)
T KOG0111|consen 148 DRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQ-GGD 199 (298)
T ss_pred cccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhcc-CCc
Confidence 35799999999999999999999999 5788 9999999999999987 887
No 30
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.41 E-value=3.4e-07 Score=69.58 Aligned_cols=53 Identities=26% Similarity=0.482 Sum_probs=46.3
Q ss_pred ccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEEe
Q 015475 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 158 (406)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~L 158 (406)
+|+||||+..|.+- ++.+|||||+.++|.+.... +..||+|+++++.+|+|.+
T Consensus 1 ~~~Cpi~~~~~~~P----v~~~~G~v~~~~~i~~~~~~--~~~cP~~~~~~~~~~l~~~ 53 (63)
T smart00504 1 EFLCPISLEVMKDP----VILPSGQTYERRAIEKWLLS--HGTDPVTGQPLTHEDLIPN 53 (63)
T ss_pred CcCCcCCCCcCCCC----EECCCCCEEeHHHHHHHHHH--CCCCCCCcCCCChhhceeC
Confidence 47899999999874 35699999999999999864 5689999999999999974
No 31
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.27 E-value=3.4e-07 Score=69.64 Aligned_cols=42 Identities=40% Similarity=0.731 Sum_probs=29.4
Q ss_pred CccccCCCCCCCCCeec-CCCCEeeHhhHHHHHHhc--CCCCCCC
Q 015475 39 FYCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKY--GKHPVTG 80 (406)
Q Consensus 39 f~~C~LSl~Pl~~PV~t-~~G~lf~ke~Il~~Ll~~--~~~Pvtg 80 (406)
-..|+||++||++||.+ .-||+|++++|++||..+ ..||++|
T Consensus 11 ~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 11 SLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp -SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred ccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 35799999999999998 669999999999999322 2466654
No 32
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.19 E-value=6.8e-07 Score=91.38 Aligned_cols=55 Identities=36% Similarity=0.655 Sum_probs=52.2
Q ss_pred cccCCCCCCCCCeec-CCCCEeeHhhHHHHHHhcCCCCCCCCCCCCCCcccccccc
Q 015475 41 CCALTFTPFEDPVCT-ADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHK 95 (406)
Q Consensus 41 ~C~LSl~Pl~~PV~t-~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDLi~l~f~~ 95 (406)
.|+||++--++||++ ..|++|+|..|.+||.+.|+||+|++||++.|||+++--.
T Consensus 2 ~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~G~DPIt~~pLs~eelV~Ik~~~ 57 (506)
T KOG0289|consen 2 VCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAETGKDPITNEPLSIEELVEIKVPA 57 (506)
T ss_pred eecccCCCCCCccccccccchHHHHHHHHHHHHcCCCCCCCCcCCHHHeeeccccc
Confidence 699999999999999 6899999999999999999999999999999999998543
No 33
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=6.4e-06 Score=75.60 Aligned_cols=49 Identities=39% Similarity=0.711 Sum_probs=42.3
Q ss_pred ecceeEEEEEcCCCChhHHHHHHHHH--hcCc-cCCceeee---ecCCeeEeecCC
Q 015475 355 TTHGDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHR---SIRKRWRIYMGE 404 (406)
Q Consensus 355 T~~G~i~ieL~~d~aP~t~~NF~~L~--~~g~-Ydgt~FhR---vi~~f~iq~gGD 404 (406)
...|++.++||.|.+|+|++||..|| ++|+ |.+..||| .+++||+| |||
T Consensus 15 ~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~q-ggD 69 (167)
T KOG0865|consen 15 EPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQ-GGD 69 (167)
T ss_pred ccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeec-cCc
Confidence 56788999999999999999999998 4555 99999999 34479988 887
No 34
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=4.1e-06 Score=90.99 Aligned_cols=55 Identities=24% Similarity=0.430 Sum_probs=47.6
Q ss_pred CccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEEe
Q 015475 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 158 (406)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~L 158 (406)
+-..||+|...+.+ ++|..||||||+.||+... ....-+||.|+.+|...||++|
T Consensus 642 ~~LkCs~Cn~R~Kd----~vI~kC~H~FC~~Cvq~r~-etRqRKCP~Cn~aFganDv~~I 696 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKD----AVITKCGHVFCEECVQTRY-ETRQRKCPKCNAAFGANDVHRI 696 (698)
T ss_pred hceeCCCccCchhh----HHHHhcchHHHHHHHHHHH-HHhcCCCCCCCCCCCccccccc
Confidence 34679999977765 7899999999999999985 3567799999999999999986
No 35
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=1.7e-05 Score=72.85 Aligned_cols=57 Identities=26% Similarity=0.422 Sum_probs=47.4
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEEe
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 158 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~L 158 (406)
.+.|-||||...+..... +--.||||||..||+++..+ ..+||+|+++.+.++++.|
T Consensus 129 ~~~~~CPiCl~~~sek~~--vsTkCGHvFC~~Cik~alk~--~~~CP~C~kkIt~k~~~rI 185 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVP--VSTKCGHVFCSQCIKDALKN--TNKCPTCRKKITHKQFHRI 185 (187)
T ss_pred ccccCCCceecchhhccc--cccccchhHHHHHHHHHHHh--CCCCCCcccccchhhheec
Confidence 466999999999987533 33579999999999999864 4599999999999988865
No 36
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=1.2e-05 Score=79.86 Aligned_cols=59 Identities=29% Similarity=0.488 Sum_probs=52.1
Q ss_pred CCCCCCccccCCCCCCCCCeec-CCCCEeeHhhHHHHHHhcCCCCCCCCCCCCCCccccc
Q 015475 34 FKRLPFYCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLT 92 (406)
Q Consensus 34 ~~~lpf~~C~LSl~Pl~~PV~t-~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDLi~l~ 92 (406)
.....=..|++|++--.+|.+. -.|++||..||+.|+.+++.|||||.|+++.+|+++-
T Consensus 295 ~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 295 LLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVDHLIRLF 354 (357)
T ss_pred cCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcchHHHHHHHh
Confidence 3344467899999999999665 7799999999999999999999999999999998874
No 37
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.66 E-value=6.7e-05 Score=59.51 Aligned_cols=54 Identities=20% Similarity=0.465 Sum_probs=41.8
Q ss_pred CccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEE
Q 015475 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (406)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~ 157 (406)
.+|.||+|+..|.+ -++.++|++|...+|++.... .+..||+|+++++.+|+|+
T Consensus 3 ~~f~CpIt~~lM~d----PVi~~~G~tyer~~I~~~l~~-~~~~~P~t~~~l~~~~l~p 56 (73)
T PF04564_consen 3 DEFLCPITGELMRD----PVILPSGHTYERSAIERWLEQ-NGGTDPFTRQPLSESDLIP 56 (73)
T ss_dssp GGGB-TTTSSB-SS----EEEETTSEEEEHHHHHHHHCT-TSSB-TTT-SB-SGGGSEE
T ss_pred cccCCcCcCcHhhC----ceeCCcCCEEcHHHHHHHHHc-CCCCCCCCCCcCCcccceE
Confidence 46999999999998 345699999999999998753 3678999999999999986
No 38
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.55 E-value=6.8e-05 Score=53.91 Aligned_cols=41 Identities=27% Similarity=0.564 Sum_probs=23.1
Q ss_pred cccccccccCceeEEEEccCCeeehHHHHHHHhhcc--CCcccc
Q 015475 103 CPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKT--KNWKEL 144 (406)
Q Consensus 103 CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~--k~~~c~ 144 (406)
|||+.. |++..+.-++-+|||||+++||++|..+. ..++||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 97766665555799999999999998643 345554
No 39
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.45 E-value=0.00014 Score=68.03 Aligned_cols=75 Identities=19% Similarity=0.340 Sum_probs=50.6
Q ss_pred CCccccCCCCCCCCCeecCCCCEeeHhhHHHHHHhcCCCCCCCCCCCCCCccccccccCCCCccccccccccccCceeEE
Q 015475 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEYHCPVLNKVFTEFTHIV 117 (406)
Q Consensus 38 pf~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDLi~l~f~~n~~~~~~CPvt~k~f~~~t~~v 117 (406)
....|+||++++.+||++.-||+|+..+|.+|+........ . ..+. ........||+|+..++. ..++
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~---~--~~~~------~~~k~~~~CPvCR~~Is~-~~Lv 84 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQ---R--VDQY------DHKREPPKCPVCKSDVSE-ATLV 84 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhcccccc---c--cccc------cccCCCCcCCCCCCcCCh-hcEE
Confidence 45789999999999999999999999999999875321100 0 0000 011234578888888865 4455
Q ss_pred EEccCCe
Q 015475 118 AVKTTGN 124 (406)
Q Consensus 118 ~i~~cG~ 124 (406)
-|-.-|.
T Consensus 85 Piygrg~ 91 (193)
T PLN03208 85 PIYGRGQ 91 (193)
T ss_pred EeeccCC
Confidence 5555554
No 40
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00012 Score=71.86 Aligned_cols=59 Identities=17% Similarity=0.228 Sum_probs=50.8
Q ss_pred CCCCCCCccccCCCCCCCCCeecCCCCEeeHhhHHHHHHhcCCCCCCCCCCCCCCcccc
Q 015475 33 PFKRLPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPL 91 (406)
Q Consensus 33 ~~~~lpf~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDLi~l 91 (406)
++-+.+-.-|.||+++.++|-||+.|||||-.||++|+.+...||+.+.+....++|-|
T Consensus 233 ~~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskvi~L 291 (293)
T KOG0317|consen 233 SSIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKVICL 291 (293)
T ss_pred ccCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcceeee
Confidence 45556667899999999999999999999999999999998888888877777777654
No 41
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.36 E-value=0.00022 Score=66.81 Aligned_cols=58 Identities=19% Similarity=0.399 Sum_probs=46.3
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhh--------------ccCCccccCCCCCCCCCCeEEec
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNI--------------KTKNWKELLTDEPFTKEDLITIQ 159 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~--------------~~k~~~c~vc~~~f~~~DII~Lq 159 (406)
.+++.||||...+.+- ++-+|||+||+.||.+... ..+...||+|..+++..++|+|-
T Consensus 16 ~~~~~CpICld~~~dP----VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 16 GGDFDCNICLDQVRDP----VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred CCccCCccCCCcCCCc----EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 4679999999998653 3458999999999987532 12346899999999999999873
No 42
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.29 E-value=0.00018 Score=71.86 Aligned_cols=54 Identities=15% Similarity=0.281 Sum_probs=43.9
Q ss_pred ccccccccc--cccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCe
Q 015475 100 EYHCPVLNK--VFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDL 155 (406)
Q Consensus 100 ~~~CPvt~k--~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DI 155 (406)
++.||+|.. .++...++.+. +|||+||..||+.+-.. ....||+|++++.+.+.
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~-~CGH~~C~sCv~~l~~~-~~~~CP~C~~~lrk~~f 58 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVR-GSGSCPECDTPLRKNNF 58 (309)
T ss_pred CCCCCcCCCCCccCcccccccC-CCCCcccHHHHHHHhcC-CCCCCCCCCCccchhhc
Confidence 578999998 46666666655 99999999999998543 34589999999998874
No 43
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00021 Score=68.30 Aligned_cols=58 Identities=21% Similarity=0.402 Sum_probs=49.0
Q ss_pred CCCCccccCCCCCCCCCeecCCCCEeeHhhHHHHHHhcC---CCCCCCCCCCCCCcccccc
Q 015475 36 RLPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYG---KHPVTGTPLKLEDLIPLTF 93 (406)
Q Consensus 36 ~lpf~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~~~---~~Pvtg~~l~lkDLi~l~f 93 (406)
.=.++-|-|||.-.++||||.-|||||--||.+||..+. .|||..-.++.+.||||-=
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 345899999999999999999999999999999999764 4677777777777777753
No 44
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.00033 Score=64.58 Aligned_cols=61 Identities=20% Similarity=0.395 Sum_probs=53.1
Q ss_pred CCCCCCCccccCCCCCCCC--CeecCCCCEeeHhhHHHHHHhcCCCCCCCCCCCCCCcccccc
Q 015475 33 PFKRLPFYCCALTFTPFED--PVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTF 93 (406)
Q Consensus 33 ~~~~lpf~~C~LSl~Pl~~--PV~t~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDLi~l~f 93 (406)
+...-+-+-|+|++.++.. ||.|.-|||||++||-..|...-+||+.+..++.|++++|.+
T Consensus 125 ~~~~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 125 PLRKEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred ccccccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchhhheeccC
Confidence 3444556899999999984 667899999999999999999999999999999999998753
No 45
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.00043 Score=72.65 Aligned_cols=57 Identities=25% Similarity=0.424 Sum_probs=52.0
Q ss_pred cccCCCCCCCCCeecCCCCEeeHhhHHHHHHhc-----CCCCCCCCCCCCCCccccccccCC
Q 015475 41 CCALTFTPFEDPVCTADGSVFELMSITPYIRKY-----GKHPVTGTPLKLEDLIPLTFHKNA 97 (406)
Q Consensus 41 ~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~~-----~~~Pvtg~~l~lkDLi~l~f~~n~ 97 (406)
.|+|||.|..-|+.|..||+||-.|||+|+.-- +.||+.+..+.++||.++.+....
T Consensus 188 ~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~q 249 (513)
T KOG2164|consen 188 QCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQ 249 (513)
T ss_pred cCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeecccc
Confidence 899999999999999999999999999999754 579999999999999999887653
No 46
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.06 E-value=0.00061 Score=51.87 Aligned_cols=46 Identities=22% Similarity=0.272 Sum_probs=31.7
Q ss_pred CccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCC
Q 015475 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTD 147 (406)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~ 147 (406)
-.+.||+|...|.+= |.-+.|||||..++|.++....+..+||+.|
T Consensus 10 ~~~~CPiT~~~~~~P---V~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDP---VKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSE---EEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCC---cCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 358999999999863 6667999999999999998556678999943
No 47
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.00051 Score=66.54 Aligned_cols=62 Identities=26% Similarity=0.397 Sum_probs=55.1
Q ss_pred CCCCCCCccccCCCCCCCCCeecCCCCEeeHhhHHHHHHhcC-CCCCCCCCCCCCCccccccc
Q 015475 33 PFKRLPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYG-KHPVTGTPLKLEDLIPLTFH 94 (406)
Q Consensus 33 ~~~~lpf~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~~~-~~Pvtg~~l~lkDLi~l~f~ 94 (406)
....+.+.||.|++..+++||+++.|..|++..|+++|..-| -+|+|+.+|+--.||+.--.
T Consensus 205 ~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~al 267 (284)
T KOG4642|consen 205 KREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLAL 267 (284)
T ss_pred cccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHH
Confidence 456678999999999999999999999999999999999866 59999999998888876433
No 48
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=96.75 E-value=0.0012 Score=47.27 Aligned_cols=44 Identities=23% Similarity=0.458 Sum_probs=36.1
Q ss_pred ccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCC
Q 015475 102 HCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDE 148 (406)
Q Consensus 102 ~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~ 148 (406)
+||++++.+++. +..++-+|||+|+.++++.+. .....||+|++
T Consensus 1 ~C~~C~~~~~~~-~~~~l~~CgH~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEE-RRPRLTSCGHIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCC-CCeEEcccCCHHHHHHHHhhc--CCCCCCcCCCC
Confidence 599999999433 346788999999999999997 45678999974
No 49
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=96.63 E-value=0.0034 Score=43.60 Aligned_cols=39 Identities=31% Similarity=0.452 Sum_probs=31.2
Q ss_pred cccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCC
Q 015475 103 CPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLT 146 (406)
Q Consensus 103 CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc 146 (406)
|||+...+.+ -+++.+|||+|+++++.+.... +.+||+|
T Consensus 1 C~iC~~~~~~---~~~~~~CGH~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD---PVVVTPCGHSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS---EEEECTTSEEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCcccC---cCEECCCCCchhHHHHHHHHHC--cCCCcCC
Confidence 8999998887 3567899999999999999764 5789987
No 50
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=96.61 E-value=0.0023 Score=44.44 Aligned_cols=37 Identities=35% Similarity=0.596 Sum_probs=31.1
Q ss_pred ccCCCCCCCCC-eecCCCCEeeHhhHHHHHHhcCCCCC
Q 015475 42 CALTFTPFEDP-VCTADGSVFELMSITPYIRKYGKHPV 78 (406)
Q Consensus 42 C~LSl~Pl~~P-V~t~~G~lf~ke~Il~~Ll~~~~~Pv 78 (406)
|+|+++.+.+| ++++-||+|.++.|..||.....+|+
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~ 38 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPV 38 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcC
Confidence 88999999999 56799999999999999998666664
No 51
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.0023 Score=67.29 Aligned_cols=70 Identities=17% Similarity=0.303 Sum_probs=49.4
Q ss_pred CCCCCCccccccccCCCCccccccccccccCceeEEEEccCCeeehHHHHHHHhhcc---CCccccCCCCCCCCCCeEEe
Q 015475 82 PLKLEDLIPLTFHKNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKT---KNWKELLTDEPFTKEDLITI 158 (406)
Q Consensus 82 ~l~lkDLi~l~f~~n~~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~---k~~~c~vc~~~f~~~DII~L 158 (406)
++..+++..+.... .+.||||..... +..+-.||||||..||=++-.-. ..-.||+|...++.+|+-++
T Consensus 172 p~~~e~i~qv~~~t----~~~CPICL~~~~----~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv 243 (513)
T KOG2164|consen 172 PVDWEDIFQVYGST----DMQCPICLEPPS----VPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPV 243 (513)
T ss_pred ccchHHhhhhhcCc----CCcCCcccCCCC----cccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeee
Confidence 34445554444443 679999998875 22333499999999998885322 34579999999999998766
Q ss_pred c
Q 015475 159 Q 159 (406)
Q Consensus 159 q 159 (406)
-
T Consensus 244 ~ 244 (513)
T KOG2164|consen 244 F 244 (513)
T ss_pred e
Confidence 3
No 52
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=96.19 E-value=0.0054 Score=43.55 Aligned_cols=42 Identities=26% Similarity=0.384 Sum_probs=34.1
Q ss_pred ccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCC
Q 015475 102 HCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLT 146 (406)
Q Consensus 102 ~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc 146 (406)
.|||+...|.....++.+ +|||+|.+++|.+.... +..||+|
T Consensus 2 ~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~~~~~--~~~CP~C 43 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKL-PCGHVFHRSCIKEWLKR--NNSCPVC 43 (44)
T ss_dssp CETTTTCBHHTTSCEEEE-TTSEEEEHHHHHHHHHH--SSB-TTT
T ss_pred CCcCCChhhcCCCeEEEc-cCCCeeCHHHHHHHHHh--CCcCCcc
Confidence 499999999876666766 59999999999999764 4589988
No 53
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.12 E-value=0.0035 Score=64.92 Aligned_cols=55 Identities=18% Similarity=0.160 Sum_probs=47.7
Q ss_pred CCccccCCCCCCCCCeecCCCCEeeHhhHHHHHHhcCCCCCCCCCCCCCCccccc
Q 015475 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLT 92 (406)
Q Consensus 38 pf~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDLi~l~ 92 (406)
....|+||+..|.+||+++.||.||..||..||...+.||+.++++...+|....
T Consensus 25 ~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~ 79 (397)
T TIGR00599 25 TSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNW 79 (397)
T ss_pred cccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccch
Confidence 4679999999999999999999999999999999888899988877766565433
No 54
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=96.11 E-value=0.0088 Score=43.66 Aligned_cols=46 Identities=22% Similarity=0.411 Sum_probs=36.9
Q ss_pred ccccccccccccCceeEEEEccCCee-ehHHHHHHHhhccCCccccCCCCCCC
Q 015475 100 EYHCPVLNKVFTEFTHIVAVKTTGNV-FCFEAIKELNIKTKNWKELLTDEPFT 151 (406)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~cG~V-~s~~ai~~l~~~~k~~~c~vc~~~f~ 151 (406)
+..|+|++..+.+ +++.||||+ |+..++.++.. ....||+|..+++
T Consensus 2 ~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~--~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD----VVLLPCGHLCFCEECAERLLK--RKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS----EEEETTCEEEEEHHHHHHHHH--TTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc----eEEeCCCChHHHHHHhHHhcc--cCCCCCcCChhhc
Confidence 3579999988765 677899999 99999999975 4569999999875
No 55
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.0045 Score=61.03 Aligned_cols=56 Identities=20% Similarity=0.370 Sum_probs=44.4
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEEec
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQ 159 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~Lq 159 (406)
.+.+.|-+|.....+- ..-||||+|||.||-+-..+.- .||+|-++|+..+||.|+
T Consensus 237 ~a~~kC~LCLe~~~~p----SaTpCGHiFCWsCI~~w~~ek~--eCPlCR~~~~pskvi~Lr 292 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNP----SATPCGHIFCWSCILEWCSEKA--ECPLCREKFQPSKVICLR 292 (293)
T ss_pred CCCCceEEEecCCCCC----CcCcCcchHHHHHHHHHHcccc--CCCcccccCCCcceeeec
Confidence 3457888887766442 2459999999999999875433 599999999999999886
No 56
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.98 E-value=0.0053 Score=63.65 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=42.0
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCe
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDL 155 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DI 155 (406)
+..+.||||...|..- ++-+|||+||..||.+.... ...||+|..++...++
T Consensus 24 e~~l~C~IC~d~~~~P----vitpCgH~FCs~CI~~~l~~--~~~CP~Cr~~~~~~~L 75 (397)
T TIGR00599 24 DTSLRCHICKDFFDVP----VLTSCSHTFCSLCIRRCLSN--QPKCPLCRAEDQESKL 75 (397)
T ss_pred ccccCCCcCchhhhCc----cCCCCCCchhHHHHHHHHhC--CCCCCCCCCccccccC
Confidence 5578999999999753 25699999999999988643 3479999999876543
No 57
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.007 Score=62.06 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=41.9
Q ss_pred CccccccccccccCceeEEEEccCCeeehHHHHHHHhhccC-CccccCCCCCCCCCCeE
Q 015475 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTK-NWKELLTDEPFTKEDLI 156 (406)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k-~~~c~vc~~~f~~~DII 156 (406)
.-|.|||++..-++...=+- -.||||+|.+|+.+|..... .++||-|-..-.-.|.+
T Consensus 333 SvF~CPVlKeqtsdeNPPm~-L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~k 390 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMM-LICGHVISKDALNRLSKNGSQSFKCPYCPVEQLASDTK 390 (394)
T ss_pred ceeecccchhhccCCCCCee-eeccceecHHHHHHHhhCCCeeeeCCCCCcccCHHhcc
Confidence 35899999887776554443 37999999999999975432 38899998765544443
No 58
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=95.66 E-value=0.018 Score=39.97 Aligned_cols=41 Identities=20% Similarity=0.391 Sum_probs=34.2
Q ss_pred cccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCC
Q 015475 103 CPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLT 146 (406)
Q Consensus 103 CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc 146 (406)
|||+...+.... .+.+|||.|+..++.++........||+|
T Consensus 1 C~iC~~~~~~~~---~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV---ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE---EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC---EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 788888887653 67899999999999999875567788886
No 59
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.49 E-value=0.0076 Score=60.13 Aligned_cols=58 Identities=24% Similarity=0.327 Sum_probs=44.9
Q ss_pred ccccccccccccCceeEEEEccCCeeehHHHHHHHhhccC-CccccCCCCCCCCCCeEEe
Q 015475 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTK-NWKELLTDEPFTKEDLITI 158 (406)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k-~~~c~vc~~~f~~~DII~L 158 (406)
-|+|||+...-++-..-+. -.||||++.+|+.+|..+.. .++||-|-+.-.-.|+|-+
T Consensus 336 ~FiCPVlKe~~t~ENpP~m-l~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~~~~~~rv 394 (396)
T COG5109 336 LFICPVLKELCTDENPPVM-LECGHVISKEALSVLSQNGVLSFKCPYCPEMSKYENILRV 394 (396)
T ss_pred eeeccccHhhhcccCCCee-eeccceeeHHHHHHHhhcCcEEeeCCCCCcchhhhhhhcc
Confidence 4899999888777554444 48999999999999986432 4789999887777776643
No 60
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.012 Score=57.38 Aligned_cols=55 Identities=27% Similarity=0.385 Sum_probs=45.1
Q ss_pred CCCccccCCCCCCCCCeecCCCCEeeHhhHHH-HHHhc-CCCCCCCCCCCCCCcccc
Q 015475 37 LPFYCCALTFTPFEDPVCTADGSVFELMSITP-YIRKY-GKHPVTGTPLKLEDLIPL 91 (406)
Q Consensus 37 lpf~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~-~Ll~~-~~~Pvtg~~l~lkDLi~l 91 (406)
+.=+-|+||+++.+.|+|++-||||+..||+. |=.++ ..||+.+....++++|=|
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~viil 269 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKVIIL 269 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchhhhee
Confidence 33455999999999999999999999999999 76655 449998877777776433
No 61
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=95.13 E-value=0.033 Score=39.59 Aligned_cols=40 Identities=20% Similarity=0.421 Sum_probs=28.4
Q ss_pred cccccccccCceeEEEEccCCeeehHHHHHHHhhccCC--ccccCC
Q 015475 103 CPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKN--WKELLT 146 (406)
Q Consensus 103 CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~--~~c~vc 146 (406)
|||+...|.+= |. -+|||+|+..+|.++...... +.||+|
T Consensus 1 CpiC~~~~~~P---v~-l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VS-LPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE--SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cc-cCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999873 43 499999999999999865433 468876
No 62
>PHA02929 N1R/p28-like protein; Provisional
Probab=95.12 E-value=0.018 Score=55.99 Aligned_cols=46 Identities=22% Similarity=0.309 Sum_probs=36.5
Q ss_pred CCccccCCCCCCCCC--------eecCCCCEeeHhhHHHHHHhcCCCCCCCCCC
Q 015475 38 PFYCCALTFTPFEDP--------VCTADGSVFELMSITPYIRKYGKHPVTGTPL 83 (406)
Q Consensus 38 pf~~C~LSl~Pl~~P--------V~t~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l 83 (406)
.-..|+||++++.++ ++++-||+|+.+||.+|+..+.+||+.+.++
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPF 226 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEe
Confidence 457899999998764 5568899999999999998766666665443
No 63
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=95.11 E-value=0.026 Score=38.61 Aligned_cols=45 Identities=24% Similarity=0.406 Sum_probs=34.2
Q ss_pred ccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCC
Q 015475 102 HCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPF 150 (406)
Q Consensus 102 ~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f 150 (406)
.|||+...+. ..+.+.+|||.|...++++.... ....||+|..++
T Consensus 1 ~C~iC~~~~~---~~~~~~~C~H~~c~~C~~~~~~~-~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR---EPVVLLPCGHVFCRSCIDKWLKS-GKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh---CceEecCCCChhcHHHHHHHHHh-CcCCCCCCCCcC
Confidence 3888888883 34556679999999999988653 356899998653
No 64
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.93 E-value=0.023 Score=55.08 Aligned_cols=55 Identities=33% Similarity=0.486 Sum_probs=47.9
Q ss_pred CCccccCCCCCCCC--Cee--cCCCCEeeHhhHHHHHHhcCCCCCCCCCCCCCCccccc
Q 015475 38 PFYCCALTFTPFED--PVC--TADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLT 92 (406)
Q Consensus 38 pf~~C~LSl~Pl~~--PV~--t~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDLi~l~ 92 (406)
.-+.|+++-.-|.+ |++ .+.|++|.++|+..+|..-+.||||+.|++-+|||.|.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~Lq 278 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIGLQ 278 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceEeee
Confidence 35788888888775 333 48999999999999999999999999999999999987
No 65
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=94.90 E-value=0.031 Score=39.62 Aligned_cols=39 Identities=26% Similarity=0.490 Sum_probs=31.1
Q ss_pred ccccCCCCCCC--CC-eecCCCCEeeHhhHHHHHHhcCCCCC
Q 015475 40 YCCALTFTPFE--DP-VCTADGSVFELMSITPYIRKYGKHPV 78 (406)
Q Consensus 40 ~~C~LSl~Pl~--~P-V~t~~G~lf~ke~Il~~Ll~~~~~Pv 78 (406)
+.|+|+++++. +. +..+-||+|..++|.+||..+..+|+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~ 42 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPV 42 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TT
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCc
Confidence 46999999984 34 44488999999999999998877775
No 66
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=94.76 E-value=0.011 Score=57.49 Aligned_cols=59 Identities=20% Similarity=0.185 Sum_probs=46.3
Q ss_pred CccccCCCCCCCCCeec-CCCCEeeHhhHHHHHHhcCCCCCCCCCCCCCCccccccccCCCCccccccccccccCceeEE
Q 015475 39 FYCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEYHCPVLNKVFTEFTHIV 117 (406)
Q Consensus 39 f~~C~LSl~Pl~~PV~t-~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDLi~l~f~~n~~~~~~CPvt~k~f~~~t~~v 117 (406)
=+.|+||+.|..+||++ .-||+|++..|.++|-.+. ...|||.+.+ + +
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~-------------------------~i~CPv~gC~-~-----~ 224 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEI-------------------------TIRCPVLGCE-N-----P 224 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCc-------------------------eeecccccCC-c-----c
Confidence 46899999999999998 7899999999999987522 3578888887 1 3
Q ss_pred EEccCCeeehH
Q 015475 118 AVKTTGNVFCF 128 (406)
Q Consensus 118 ~i~~cG~V~s~ 128 (406)
+.-.||++.-.
T Consensus 225 ~~~~~~~l~~d 235 (262)
T KOG2979|consen 225 YYIQPGHLDED 235 (262)
T ss_pred ccccccccCch
Confidence 34467776655
No 67
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=94.28 E-value=0.04 Score=39.15 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=28.0
Q ss_pred ccCCCCCCCCCeecCCCCEeeHhhHHHHHHhc
Q 015475 42 CALTFTPFEDPVCTADGSVFELMSITPYIRKY 73 (406)
Q Consensus 42 C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~~ 73 (406)
|+|++..|.+||...-||.|++.+|..|..+.
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~ 32 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEP 32 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHcc
Confidence 89999999999999999999999999998754
No 68
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.12 E-value=0.028 Score=55.01 Aligned_cols=57 Identities=16% Similarity=0.183 Sum_probs=43.8
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEEe
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 158 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~L 158 (406)
.+.|-|++|...... ..-.+||||||+.||-..--+.+.-.||+|-.....++||.|
T Consensus 213 ~~d~kC~lC~e~~~~----ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~viil 269 (271)
T COG5574 213 LADYKCFLCLEEPEV----PSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKVIIL 269 (271)
T ss_pred ccccceeeeecccCC----cccccccchhhHHHHHHHHHhhccccCchhhhhccchhhhee
Confidence 347889999887754 345699999999999884333455579999988887887765
No 69
>PHA02929 N1R/p28-like protein; Provisional
Probab=94.03 E-value=0.048 Score=53.00 Aligned_cols=50 Identities=16% Similarity=0.284 Sum_probs=39.6
Q ss_pred ccccccccccccCce----eEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCC
Q 015475 100 EYHCPVLNKVFTEFT----HIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 151 (406)
Q Consensus 100 ~~~CPvt~k~f~~~t----~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~ 151 (406)
...||||...|.+.. .+.++-+|||+|+.+||.+... ....||+|-.+|.
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~--~~~tCPlCR~~~~ 227 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK--EKNTCPVCRTPFI 227 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh--cCCCCCCCCCEee
Confidence 468999999886532 2456778999999999998764 3458999999886
No 70
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.77 E-value=0.063 Score=52.58 Aligned_cols=59 Identities=24% Similarity=0.385 Sum_probs=43.1
Q ss_pred CCCccccCCCCCCC--CCeec--CCCCEeeHhhHHHHHHhcCCCCCCCCCCCCCCccccccccCCCCccccccccccccC
Q 015475 37 LPFYCCALTFTPFE--DPVCT--ADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEYHCPVLNKVFTE 112 (406)
Q Consensus 37 lpf~~C~LSl~Pl~--~PV~t--~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDLi~l~f~~n~~~~~~CPvt~k~f~~ 112 (406)
..-++|||++..|. .++|. +.|++|..++|-+. ... +.||+|++.|+
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~---------------------------~~Cp~c~~~f~- 161 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKS---------------------------KKCPVCGKPFT- 161 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-ccc---------------------------ccccccCCccc-
Confidence 44569999999995 35554 89999999998876 111 22777777777
Q ss_pred ceeEEEEccCCe
Q 015475 113 FTHIVAVKTTGN 124 (406)
Q Consensus 113 ~t~~v~i~~cG~ 124 (406)
...||.|-+.+.
T Consensus 162 ~~DiI~Lnp~~e 173 (260)
T PF04641_consen 162 EEDIIPLNPPEE 173 (260)
T ss_pred cCCEEEecCCcc
Confidence 556777777777
No 71
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=93.62 E-value=0.026 Score=56.69 Aligned_cols=53 Identities=26% Similarity=0.385 Sum_probs=43.5
Q ss_pred cccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEEe
Q 015475 101 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 158 (406)
Q Consensus 101 ~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~L 158 (406)
=.||||.|.--+.+ ++-.+|-||||.|+-.... +..+|||++.|-.-+++|-|
T Consensus 301 ~~CpvClk~r~Npt---vl~vSGyVfCY~Ci~~Yv~--~~~~CPVT~~p~~v~~l~rl 353 (357)
T KOG0826|consen 301 EVCPVCLKKRQNPT---VLEVSGYVFCYPCIFSYVV--NYGHCPVTGYPASVDHLIRL 353 (357)
T ss_pred ccChhHHhccCCCc---eEEecceEEeHHHHHHHHH--hcCCCCccCCcchHHHHHHH
Confidence 47999999887664 4567899999999999886 56699999999887777654
No 72
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.85 E-value=0.076 Score=52.28 Aligned_cols=51 Identities=18% Similarity=0.345 Sum_probs=39.2
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCC
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 151 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~ 151 (406)
.....||+|++-=+.-. .+-+|||+|||-|+..-..-.-.+.||.||++..
T Consensus 237 t~~~~C~~Cg~~PtiP~---~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPH---VIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCe---eeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 34568999998766532 2458999999999998765455689999998764
No 73
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=92.75 E-value=0.16 Score=35.06 Aligned_cols=31 Identities=29% Similarity=0.630 Sum_probs=29.2
Q ss_pred ccCCCCCCCCCe-ecCCCCEeeHhhHHHHHHh
Q 015475 42 CALTFTPFEDPV-CTADGSVFELMSITPYIRK 72 (406)
Q Consensus 42 C~LSl~Pl~~PV-~t~~G~lf~ke~Il~~Ll~ 72 (406)
|+|.++++.+|+ ..+=||.|....|..|+..
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~ 32 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLEN 32 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHH
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHh
Confidence 899999999999 7799999999999999995
No 74
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=92.64 E-value=0.18 Score=36.74 Aligned_cols=44 Identities=20% Similarity=0.333 Sum_probs=37.6
Q ss_pred ccccCCCCCCCCCeecCCCCE-eeHhhHHHHHHhcCCCCCCCCCC
Q 015475 40 YCCALTFTPFEDPVCTADGSV-FELMSITPYIRKYGKHPVTGTPL 83 (406)
Q Consensus 40 ~~C~LSl~Pl~~PV~t~~G~l-f~ke~Il~~Ll~~~~~Pvtg~~l 83 (406)
..|.|++....++++.+-||+ |+..++..|+.....+|+-+.++
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i 47 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPI 47 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhh
Confidence 469999999999999999999 99999999999878888876654
No 75
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=92.31 E-value=0.18 Score=36.23 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=21.5
Q ss_pred ccCCCCCCCC----CeecCCCCEeeHhhHHHHHHhc
Q 015475 42 CALTFTPFED----PVCTADGSVFELMSITPYIRKY 73 (406)
Q Consensus 42 C~LSl~Pl~~----PV~t~~G~lf~ke~Il~~Ll~~ 73 (406)
|+|+.+ +.+ |++-+-||+|++++|..++...
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC
Confidence 899999 888 9999999999999999998854
No 76
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=91.90 E-value=0.13 Score=33.64 Aligned_cols=39 Identities=21% Similarity=0.327 Sum_probs=27.4
Q ss_pred cccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCC
Q 015475 103 CPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLT 146 (406)
Q Consensus 103 CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc 146 (406)
|||+..... ...+.+|||+|.+.+++++.. .....||+|
T Consensus 1 C~iC~~~~~----~~~~~~C~H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELK----DPVVLPCGHTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccCCC----CcEEecCCChHHHHHHHHHHH-hCcCCCCCC
Confidence 677766632 244558999999999998864 234568876
No 77
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.51 E-value=0.21 Score=48.04 Aligned_cols=59 Identities=10% Similarity=0.304 Sum_probs=46.4
Q ss_pred CCCCccccccccccccCceeEEEEccCCeeehHHHHHHHhhc-cCCccccCCCCCCCCCCeEEe
Q 015475 96 NAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK-TKNWKELLTDEPFTKEDLITI 158 (406)
Q Consensus 96 n~~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~-~k~~~c~vc~~~f~~~DII~L 158 (406)
++.+.|-|-||...=-+ -++--|||.|||-||-+.-.- ...-.||||.-..+.+.+|+|
T Consensus 43 ~~~~~FdCNICLd~akd----PVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPl 102 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLAKD----PVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPL 102 (230)
T ss_pred CCCCceeeeeeccccCC----CEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEee
Confidence 45678999999776544 345679999999999887532 233468999999999999998
No 78
>PHA02926 zinc finger-like protein; Provisional
Probab=91.36 E-value=0.14 Score=49.13 Aligned_cols=53 Identities=13% Similarity=0.211 Sum_probs=40.7
Q ss_pred CccccccccccccC-----ceeEEEEccCCeeehHHHHHHHhhccC----CccccCCCCCCC
Q 015475 99 GEYHCPVLNKVFTE-----FTHIVAVKTTGNVFCFEAIKELNIKTK----NWKELLTDEPFT 151 (406)
Q Consensus 99 ~~~~CPvt~k~f~~-----~t~~v~i~~cG~V~s~~ai~~l~~~~k----~~~c~vc~~~f~ 151 (406)
.+..|+||....-. ...|-.+.+|||+||..|+.+-..... ...||+|-..|.
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 35689999977633 335778889999999999999875321 235999999986
No 79
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=91.21 E-value=0.096 Score=39.64 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=27.9
Q ss_pred EEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCe
Q 015475 118 AVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDL 155 (406)
Q Consensus 118 ~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DI 155 (406)
.+.+|||+++..++.--. ..-||+|+.||...|+
T Consensus 21 ~~~pCgH~I~~~~f~~~r----YngCPfC~~~~~~~~~ 54 (55)
T PF14447_consen 21 TVLPCGHLICDNCFPGER----YNGCPFCGTPFEFDDP 54 (55)
T ss_pred ccccccceeeccccChhh----ccCCCCCCCcccCCCC
Confidence 346999999999987654 3469999999998875
No 80
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=90.86 E-value=0.26 Score=36.41 Aligned_cols=46 Identities=26% Similarity=0.424 Sum_probs=25.2
Q ss_pred cccccccccccCceeEEEEccCCee--ehHHHHHHHhhccCCccccCCCCC
Q 015475 101 YHCPVLNKVFTEFTHIVAVKTTGNV--FCFEAIKELNIKTKNWKELLTDEP 149 (406)
Q Consensus 101 ~~CPvt~k~f~~~t~~v~i~~cG~V--~s~~ai~~l~~~~k~~~c~vc~~~ 149 (406)
..||+++..+.-- |=-+.|-|+ |..+.+=+.+.....|+||+|++|
T Consensus 3 L~CPls~~~i~~P---~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIP---VRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSE---EEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeC---ccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 4799999998642 323456665 777777777777778999999975
No 81
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=90.71 E-value=0.11 Score=57.25 Aligned_cols=56 Identities=20% Similarity=0.280 Sum_probs=50.7
Q ss_pred CCccccCCCCCCCCCeecCCCCEeeHhhHHHHHHh-cCCCCCCCCCCCCCCcccccc
Q 015475 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIRK-YGKHPVTGTPLKLEDLIPLTF 93 (406)
Q Consensus 38 pf~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~-~~~~Pvtg~~l~lkDLi~l~f 93 (406)
---.|++|..-+.+-|++..||+||.+||-..+.. +.+||..+...+..|+.++++
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~l 698 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRIHL 698 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccCC
Confidence 35689999999999999999999999999999985 578999999999999998874
No 82
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=90.42 E-value=0.18 Score=49.99 Aligned_cols=54 Identities=9% Similarity=0.111 Sum_probs=41.0
Q ss_pred ccccccc--cccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEE
Q 015475 102 HCPVLNK--VFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (406)
Q Consensus 102 ~CPvt~k--~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~ 157 (406)
-||+|+. -|+..- +.+|.+|||-+|++|+..|-. .+...||.|+++.-+..+.+
T Consensus 2 ~Cp~CKt~~Y~np~l-k~~in~C~H~lCEsCvd~iF~-~g~~~CpeC~~iLRk~nfr~ 57 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDL-KLMINECGHRLCESCVDRIFS-LGPAQCPECMVILRKNNFRV 57 (300)
T ss_pred CCcccccceecCccc-eeeeccccchHHHHHHHHHHh-cCCCCCCcccchhhhcccch
Confidence 4888754 355443 345679999999999999954 46789999999988777654
No 83
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=90.32 E-value=0.21 Score=52.16 Aligned_cols=58 Identities=28% Similarity=0.435 Sum_probs=47.8
Q ss_pred cccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEEecCCCC
Q 015475 101 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQNPNA 163 (406)
Q Consensus 101 ~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~Lqdp~~ 163 (406)
+.|.|++++--. -|+-..+||||-.+.|++... .+.+||++++|++.+|||.|--|.-
T Consensus 1 m~CaISgEvP~~---PVvS~~Sg~vfEkrLIEqyI~--e~G~DPIt~~pLs~eelV~Ik~~~~ 58 (506)
T KOG0289|consen 1 MVCAISGEVPEE---PVVSPVSGHVFEKRLIEQYIA--ETGKDPITNEPLSIEELVEIKVPAQ 58 (506)
T ss_pred CeecccCCCCCC---ccccccccchHHHHHHHHHHH--HcCCCCCCCCcCCHHHeeecccccc
Confidence 468888887643 366677999999999999986 4569999999999999999966553
No 84
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=89.96 E-value=0.35 Score=31.55 Aligned_cols=37 Identities=22% Similarity=0.517 Sum_probs=30.6
Q ss_pred ccCCCCCCCCCeecCCCCEeeHhhHHHHHH-hcCCCCC
Q 015475 42 CALTFTPFEDPVCTADGSVFELMSITPYIR-KYGKHPV 78 (406)
Q Consensus 42 C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll-~~~~~Pv 78 (406)
|+|++.....|+..+-||+|....|..|+. ....+|+
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~ 38 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPI 38 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCC
Confidence 788888888999999999999999999998 3334543
No 85
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.69 E-value=0.17 Score=47.45 Aligned_cols=45 Identities=18% Similarity=0.275 Sum_probs=38.4
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCC
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDE 148 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~ 148 (406)
..++.||||...|..- .+-+|||.||..|+..+.. ....||+|-.
T Consensus 11 ~~~~~C~iC~~~~~~p----~~l~C~H~~c~~C~~~~~~--~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP----VLLPCGHNFCRACLTRSWE--GPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcC----ccccccchHhHHHHHHhcC--CCcCCcccCC
Confidence 4678999999999876 6679999999999999875 4478999993
No 86
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=89.63 E-value=0.48 Score=32.07 Aligned_cols=40 Identities=23% Similarity=0.482 Sum_probs=32.3
Q ss_pred cccCCCCCCCCCeec-CCCCEeeHhhHHHHHHh-cCCCCCCC
Q 015475 41 CCALTFTPFEDPVCT-ADGSVFELMSITPYIRK-YGKHPVTG 80 (406)
Q Consensus 41 ~C~LSl~Pl~~PV~t-~~G~lf~ke~Il~~Ll~-~~~~Pvtg 80 (406)
.|+|++.++.+|+.. +-||.|...++..|+.. ...+|+-+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~ 42 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCR 42 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCC
Confidence 388999999888877 58999999999999986 44566543
No 87
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=86.93 E-value=0.75 Score=33.98 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=24.1
Q ss_pred ccccCCCCCCCCCeec---CCCCEeeHhhHHHHHHhc
Q 015475 40 YCCALTFTPFEDPVCT---ADGSVFELMSITPYIRKY 73 (406)
Q Consensus 40 ~~C~LSl~Pl~~PV~t---~~G~lf~ke~Il~~Ll~~ 73 (406)
..|+||.+++..||=. .--.-||.++.|.+....
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~ 39 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRT 39 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhcc
Confidence 3699999999999875 223459999999998864
No 88
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.42 E-value=0.43 Score=47.58 Aligned_cols=47 Identities=28% Similarity=0.276 Sum_probs=38.8
Q ss_pred CCCCCCccccCCCCCCCCCeecCCCCEeeHhhHHHHHHhcCCCCCCCC
Q 015475 34 FKRLPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGT 81 (406)
Q Consensus 34 ~~~lpf~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~~~~~Pvtg~ 81 (406)
...+|| -|-||.++|.+||++..||-|+..|.+..+.+...|++.++
T Consensus 237 ~~~~Pf-~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~ 283 (313)
T KOG1813|consen 237 IELLPF-KCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQ 283 (313)
T ss_pred cccCCc-cccccccccccchhhcCCceeehhhhccccccCCcceeccc
Confidence 445555 38899999999999999999999999999887666666544
No 89
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=85.79 E-value=0.88 Score=36.05 Aligned_cols=41 Identities=24% Similarity=0.544 Sum_probs=32.3
Q ss_pred CccccCCCCCCCCC------------eec-CCCCEeeHhhHHHHHHhcCCCCCC
Q 015475 39 FYCCALTFTPFEDP------------VCT-ADGSVFELMSITPYIRKYGKHPVT 79 (406)
Q Consensus 39 f~~C~LSl~Pl~~P------------V~t-~~G~lf~ke~Il~~Ll~~~~~Pvt 79 (406)
-+.|+|++.+|.+| ++. .-||.|-..+|.+||..+.++|+-
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~C 72 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLC 72 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCC
Confidence 44699999999554 333 679999999999999988888863
No 90
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=83.50 E-value=1.2 Score=38.45 Aligned_cols=53 Identities=17% Similarity=0.361 Sum_probs=33.1
Q ss_pred CCccccCCCCCCCCCeecC------CCCEeeHhhHHHHHHhcCCCCCCCCCCCCCCccc
Q 015475 38 PFYCCALTFTPFEDPVCTA------DGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIP 90 (406)
Q Consensus 38 pf~~C~LSl~Pl~~PV~t~------~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDLi~ 90 (406)
....|+|+|..-+.-|.-+ -=.|||++++.+.+.....+|++++|++..-+|.
T Consensus 39 e~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~~~HPLSREpit~sMIv~ 97 (113)
T PF06416_consen 39 EHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREGAPHPLSREPITPSMIVS 97 (113)
T ss_dssp HHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT---TTT-----TTTEE-
T ss_pred HHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcCCCCCCccCCCChhhEec
Confidence 3778999999877765531 1369999999999999999999999999887764
No 91
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=83.20 E-value=0.51 Score=47.95 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=42.6
Q ss_pred CccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCe
Q 015475 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDL 155 (406)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DI 155 (406)
.-..|-||+.-|+ +-+|-||||-||-=||..+-. ....||.|-.+|++.|+
T Consensus 22 ~lLRC~IC~eyf~----ip~itpCsHtfCSlCIR~~L~--~~p~CP~C~~~~~Es~L 72 (442)
T KOG0287|consen 22 DLLRCGICFEYFN----IPMITPCSHTFCSLCIRKFLS--YKPQCPTCCVTVTESDL 72 (442)
T ss_pred HHHHHhHHHHHhc----CceeccccchHHHHHHHHHhc--cCCCCCceecccchhhh
Confidence 3467999999886 677889999999999998863 34589999999998764
No 92
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=82.49 E-value=0.4 Score=37.52 Aligned_cols=49 Identities=16% Similarity=0.315 Sum_probs=24.4
Q ss_pred cccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeE
Q 015475 101 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 156 (406)
Q Consensus 101 ~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII 156 (406)
..|+++...|..- |.+..|.|+|+..+|.+.. ...||+|..|-...|+-
T Consensus 8 LrCs~C~~~l~~p---v~l~~CeH~fCs~Ci~~~~----~~~CPvC~~Paw~qD~~ 56 (65)
T PF14835_consen 8 LRCSICFDILKEP---VCLGGCEHIFCSSCIRDCI----GSECPVCHTPAWIQDIQ 56 (65)
T ss_dssp TS-SSS-S--SS----B---SSS--B-TTTGGGGT----TTB-SSS--B-S-SS--
T ss_pred cCCcHHHHHhcCC---ceeccCccHHHHHHhHHhc----CCCCCCcCChHHHHHHH
Confidence 4688888887653 6788999999999998753 23699999999888864
No 93
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=82.28 E-value=0.59 Score=38.58 Aligned_cols=30 Identities=27% Similarity=0.466 Sum_probs=24.8
Q ss_pred cccccccccccCceeEEEEccCCeeehHHHHH
Q 015475 101 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIK 132 (406)
Q Consensus 101 ~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~ 132 (406)
-.|+||++.|.+ ..+++-|||+||-+.|++
T Consensus 79 ~~C~vC~k~l~~--~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 79 TKCSVCGKPLGN--SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCccCcCCcCCC--ceEEEeCCCeEEeccccc
Confidence 469999999987 356677999999988865
No 94
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=82.08 E-value=0.73 Score=45.98 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=38.9
Q ss_pred CccccCCCCCCCCCeecCCCCEeeHhhHHHHHHhcCCCCCCCC
Q 015475 39 FYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGT 81 (406)
Q Consensus 39 f~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~~~~~Pvtg~ 81 (406)
...|.||-.-|..|+.|..||.||.-||-.||-.|..||+...
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~ 67 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCRE 67 (391)
T ss_pred HHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccc
Confidence 5679999999999999999999999999999999888887644
No 95
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.74 E-value=0.8 Score=46.99 Aligned_cols=78 Identities=19% Similarity=0.274 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCCCccccccccCCCCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCC
Q 015475 75 KHPVTGTPLKLEDLIPLTFHKNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED 154 (406)
Q Consensus 75 ~~Pvtg~~l~lkDLi~l~f~~n~~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~D 154 (406)
.||+....+..-- -.|-|..-..+...|-++++.+++. ..-.+.|.|.||...+++.++...+ ..||.+++.|...+
T Consensus 306 ~CpvC~~~f~~ia-~~LPfah~~~S~Lvc~isge~md~~-N~P~lfpnG~Vyg~~~L~s~~~~~~-i~dP~~~k~f~~~~ 382 (389)
T KOG0396|consen 306 NCPVCCEAFKPIA-QALPFAHHAQSRLVCSISGELMDDD-NPPHLFPNGYVYGTKALESLNEDDG-IGDPRTKKVFRYSE 382 (389)
T ss_pred CCCCcccccchhh-hcCCchhhhhhHHHhhccccccCCC-CCcccccCceeehhHHHHhhcccCC-CcCCCCCccccHHH
Confidence 4667665443322 3666777778899999999999876 4555679999999999999986332 78999998887654
Q ss_pred e
Q 015475 155 L 155 (406)
Q Consensus 155 I 155 (406)
.
T Consensus 383 l 383 (389)
T KOG0396|consen 383 L 383 (389)
T ss_pred H
Confidence 4
No 96
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.44 E-value=0.64 Score=43.57 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=31.3
Q ss_pred CCccccCCCCCCCCCeecCCCCEeeHhhHHHHHH
Q 015475 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIR 71 (406)
Q Consensus 38 pf~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll 71 (406)
....|+||++.|.+|++.+.||.|+..+|-.++.
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~ 45 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHNFCRACLTRSWE 45 (386)
T ss_pred ccccChhhHHHhhcCccccccchHhHHHHHHhcC
Confidence 4678999999999997789999999999999887
No 97
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=78.60 E-value=0.65 Score=47.19 Aligned_cols=50 Identities=20% Similarity=0.356 Sum_probs=42.5
Q ss_pred CccccCCCCCCCCCeecCCCCEeeHhhHHHHHHhcCCCCCCCCCCCCCCc
Q 015475 39 FYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDL 88 (406)
Q Consensus 39 f~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDL 88 (406)
...|.||..-|..||+++.||.||--||-.||..+-.||..--+..-.||
T Consensus 23 lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~L 72 (442)
T KOG0287|consen 23 LLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDL 72 (442)
T ss_pred HHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccchhhh
Confidence 56799999999999999999999999999999999999976544443333
No 98
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=78.12 E-value=1.6 Score=45.39 Aligned_cols=52 Identities=23% Similarity=0.342 Sum_probs=45.8
Q ss_pred CccccCCCCCCCCCeec-CCCCEeeHhhHHHHHHhcCCCCCCCCCCCCCCccc
Q 015475 39 FYCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIP 90 (406)
Q Consensus 39 f~~C~LSl~Pl~~PV~t-~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDLi~ 90 (406)
=..|+++-.++.+|+-+ .-|+.|+..+|.+|+..+..||+....+....+++
T Consensus 21 ~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 21 NLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELP 73 (391)
T ss_pred cccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhhccC
Confidence 47899999999999996 99999999999999999889999877766666665
No 99
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=76.83 E-value=1.6 Score=42.88 Aligned_cols=59 Identities=15% Similarity=0.103 Sum_probs=42.4
Q ss_pred ccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEEecCCCCcc
Q 015475 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQNPNALD 165 (406)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~Lqdp~~~~ 165 (406)
...||++++.+-+- +.-+.|||||..+.+.++.-.....+||+-+-+ +...+|+-+-.+
T Consensus 176 s~rdPis~~~I~nP---viSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~----~~~~~~~~~l~~ 234 (262)
T KOG2979|consen 176 SNRDPISKKPIVNP---VISKKCGHVYDRDSIMQILCDEITIRCPVLGCE----NPYYIQPGHLDE 234 (262)
T ss_pred cccCchhhhhhhch---hhhcCcCcchhhhhHHHHhccCceeecccccCC----ccccccccccCc
Confidence 46799998777542 667889999999999999754445689987765 555566544333
No 100
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=76.35 E-value=2.2 Score=46.72 Aligned_cols=61 Identities=23% Similarity=0.316 Sum_probs=54.4
Q ss_pred CCCCccccCCCCCCCCCeec-CCCCEeeHhhHHHHHHhcCCCCCCCCCCCCCCccccccccC
Q 015475 36 RLPFYCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKN 96 (406)
Q Consensus 36 ~lpf~~C~LSl~Pl~~PV~t-~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDLi~l~f~~n 96 (406)
.+...--||.+.++++||+- ..|..-|+.-|-.+|+..+++|.++-||++.|++|..-.+.
T Consensus 851 vPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahllsd~tDPFNRmPLtlddVtpn~eLre 912 (929)
T COG5113 851 VPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSDGTDPFNRMPLTLDDVTPNAELRE 912 (929)
T ss_pred CchhhhCchhhhcccCCeecccccccccHHHHHHHHhcCCCCccccCCCchhhcCCCHHHHH
Confidence 44577789999999999998 68999999999999999999999999999999998765554
No 101
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.01 E-value=2 Score=44.51 Aligned_cols=75 Identities=15% Similarity=0.092 Sum_probs=47.5
Q ss_pred cccccccccccCceeEEEEccCCeeehHHHHHHHhhcc-CCccccCCCCCCCCCCeEEecCCCCcchhhhccchhhhcCc
Q 015475 101 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKT-KNWKELLTDEPFTKEDLITIQNPNALDTKVTLEFDHVKKGL 179 (406)
Q Consensus 101 ~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~-k~~~c~vc~~~f~~~DII~Lqdp~~~~~~~~~~f~hvk~~~ 179 (406)
-.|-||-.-|-....+..|.+|||||-.-|+.+.-.-. .+-.||+|. |++|..+-- |-..|+||.+.-
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~----------ik~~~r~~~-N~~~~d~vvEe~ 73 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ----------IKLQERHVA-NPSTVDHVVEES 73 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee----------ecccceeee-chhhhhhhhccc
Confidence 46888844444444466788899999999999885422 223799998 343333222 345688888754
Q ss_pred ccChHHH
Q 015475 180 KVDDEEL 186 (406)
Q Consensus 180 ~~~~~~~ 186 (406)
-+-+.+.
T Consensus 74 ~Vld~~~ 80 (465)
T KOG0827|consen 74 VVLDWDV 80 (465)
T ss_pred hhhhHHH
Confidence 4444443
No 102
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=74.29 E-value=2.2 Score=28.66 Aligned_cols=11 Identities=18% Similarity=0.453 Sum_probs=9.1
Q ss_pred CCccccCCCCC
Q 015475 139 KNWKELLTDEP 149 (406)
Q Consensus 139 k~~~c~vc~~~ 149 (406)
.+|.||+|+.+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 57899999974
No 103
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=73.85 E-value=1.9 Score=43.29 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=30.7
Q ss_pred ccccCCCCCCCCCeec-CCCCEeeHhhHHHHHHh
Q 015475 40 YCCALTFTPFEDPVCT-ADGSVFELMSITPYIRK 72 (406)
Q Consensus 40 ~~C~LSl~Pl~~PV~t-~~G~lf~ke~Il~~Ll~ 72 (406)
.-|+||...+++||=| ..|++|+.|||-..|++
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~d 308 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLD 308 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhh
Confidence 6899999999999999 78999999999999995
No 104
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=73.83 E-value=3 Score=32.96 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=31.5
Q ss_pred ccccccccccCc---------eeEEEEccCCeeehHHHHHHHhhccCCccccCC
Q 015475 102 HCPVLNKVFTEF---------THIVAVKTTGNVFCFEAIKELNIKTKNWKELLT 146 (406)
Q Consensus 102 ~CPvt~k~f~~~---------t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc 146 (406)
.|+|+...|.+. .-.+++.+|||+|-..+|.+... .+..||+|
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~--~~~~CP~C 72 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLK--QNNTCPLC 72 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHT--TSSB-TTS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHh--cCCcCCCC
Confidence 499999998322 24566778999999999999874 33489998
No 105
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=73.38 E-value=1.5 Score=42.56 Aligned_cols=35 Identities=17% Similarity=0.143 Sum_probs=31.5
Q ss_pred CCccccCCCCCCCCCeec-CCCCEeeHhhHHHHHHh
Q 015475 38 PFYCCALTFTPFEDPVCT-ADGSVFELMSITPYIRK 72 (406)
Q Consensus 38 pf~~C~LSl~Pl~~PV~t-~~G~lf~ke~Il~~Ll~ 72 (406)
--+.|+|+++|...|+.+ ...|.|++..|..+|.-
T Consensus 188 ~~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~ 223 (275)
T COG5627 188 LSNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQV 223 (275)
T ss_pred hcccCCcccCcchhHHHHhhhcccccHHHHHHHhcC
Confidence 357899999999999998 78999999999999873
No 106
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=73.29 E-value=1.4 Score=47.24 Aligned_cols=52 Identities=21% Similarity=0.356 Sum_probs=43.4
Q ss_pred CccccCCCCCCCCCeecCCCCEeeHhhHHHHHHhcCCCCCCCCCCCCCCccccccccCCCCccccccccccccC
Q 015475 39 FYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEYHCPVLNKVFTE 112 (406)
Q Consensus 39 f~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDLi~l~f~~n~~~~~~CPvt~k~f~~ 112 (406)
--.|.||..|.++|+.+..-|.||+-||-+|+...+.+ .+ ..||+|...++=
T Consensus 536 ~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~---------------------~n-vtCP~C~i~Lsi 587 (791)
T KOG1002|consen 536 EVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMEN---------------------NN-VTCPVCHIGLSI 587 (791)
T ss_pred ceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcc---------------------cC-CCCccccccccc
Confidence 45799999999999999999999999999999875422 22 579999888863
No 107
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.82 E-value=2.3 Score=44.37 Aligned_cols=58 Identities=19% Similarity=0.166 Sum_probs=45.2
Q ss_pred ccccccccc--ccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEEec
Q 015475 101 YHCPVLNKV--FTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQ 159 (406)
Q Consensus 101 ~~CPvt~k~--f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~Lq 159 (406)
-.||+|... |.+++++| +-.|||.|...||+.-.-+..-++||.|+.+-++.+|-.++
T Consensus 5 ~tcpiclds~~~~g~hr~v-sl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~ 64 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIV-SLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEY 64 (463)
T ss_pred ccCceeeeeeeecCceEEe-eecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHH
Confidence 379998876 45566666 44899999999999876554557999999999888876543
No 108
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.46 E-value=4.8 Score=40.59 Aligned_cols=49 Identities=8% Similarity=0.124 Sum_probs=39.3
Q ss_pred ccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCC
Q 015475 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPF 150 (406)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f 150 (406)
-.-|.||...|...-+++++ ||-|+|--.|+++-.. .=..+||+|..+.
T Consensus 323 GveCaICms~fiK~d~~~vl-PC~H~FH~~Cv~kW~~-~y~~~CPvCrt~i 371 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVL-PCDHRFHVGCVDKWLL-GYSNKCPVCRTAI 371 (374)
T ss_pred CceEEEEhhhhcccceEEEe-ccCceechhHHHHHHh-hhcccCCccCCCC
Confidence 36799999999988886554 9999999999998753 1134799999875
No 109
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.15 E-value=2.1 Score=44.54 Aligned_cols=51 Identities=12% Similarity=0.210 Sum_probs=38.9
Q ss_pred CCCCCccccccccCC--------CCccccccccccccCceeEEEEccCCeeehHHHHHHH
Q 015475 83 LKLEDLIPLTFHKNA--------EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKEL 134 (406)
Q Consensus 83 l~lkDLi~l~f~~n~--------~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l 134 (406)
-++.||++....... ..-|.|-||+.++.+...|+ .-||+||||..|++..
T Consensus 159 ~~~~sl~~~Il~~deea~~~~F~~slf~C~ICf~e~~G~~c~~-~lpC~Hv~Ck~C~kdY 217 (445)
T KOG1814|consen 159 ESIDSLKKEILQFDEEATLEKFVNSLFDCCICFEEQMGQHCFK-FLPCSHVFCKSCLKDY 217 (445)
T ss_pred cChHHHHHHHHhhhHHHHHHHHHhhcccceeeehhhcCcceee-ecccchHHHHHHHHHH
Confidence 356777776655543 35699999999998765555 5599999999998865
No 110
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=69.11 E-value=4.2 Score=30.81 Aligned_cols=46 Identities=20% Similarity=0.287 Sum_probs=39.1
Q ss_pred cccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccC--CCCCCCC
Q 015475 101 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELL--TDEPFTK 152 (406)
Q Consensus 101 ~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~v--c~~~f~~ 152 (406)
-.||++++.|.+.-.||+=-.||-+|-.++.++.. .|.. |+.+|..
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~g------~C~~~~c~~~~~~ 53 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKAG------GCINYSCGTGFEW 53 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhhCC------ceEeccCCCCccc
Confidence 47999999998888899888899999999998775 6877 8888753
No 111
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=66.86 E-value=2.3 Score=44.93 Aligned_cols=66 Identities=20% Similarity=0.374 Sum_probs=57.5
Q ss_pred hhhhhcCCCCccEEEEEecce----eEEEEEcCCCChhHHHHHHHHHhcCccCCceeeeecCCeeEeecCC
Q 015475 338 YIKVEKNPKKKGYVQLHTTHG----DLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRKRWRIYMGE 404 (406)
Q Consensus 338 ~~~~~~~~k~~~~v~l~T~~G----~i~ieL~~d~aP~t~~NF~~L~~~g~Ydgt~FhRvi~~f~iq~gGD 404 (406)
+...-+.+-..+.+.+.|..| .|.|+++.+-.|.-++-|..+|+.+|+++-.|.||+..+++| -||
T Consensus 88 minmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q-a~D 157 (558)
T KOG0882|consen 88 MINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ-AGD 157 (558)
T ss_pred hhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec-ccc
Confidence 333345556788899999999 899999999999999999999999999999999999999977 555
No 112
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=66.73 E-value=4 Score=36.57 Aligned_cols=41 Identities=17% Similarity=0.300 Sum_probs=24.0
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCC
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED 154 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~D 154 (406)
...|+||-|+..| +..-.-.+.-....+.||.||.++...|
T Consensus 97 ~~~Y~Cp~C~~~y----------------~~~ea~~~~d~~~~f~Cp~Cg~~l~~~d 137 (147)
T smart00531 97 NAYYKCPNCQSKY----------------TFLEANQLLDMDGTFTCPRCGEELEEDD 137 (147)
T ss_pred CcEEECcCCCCEe----------------eHHHHHHhcCCCCcEECCCCCCEEEEcC
Confidence 4568898655544 3332323321234489999998875443
No 113
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=66.50 E-value=3.9 Score=40.96 Aligned_cols=49 Identities=16% Similarity=0.151 Sum_probs=38.7
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCC
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~ 152 (406)
+.-..|-||..-| ++-++-+|||-||+=||+.--- .+-.||+|-++|.+
T Consensus 23 Ds~lrC~IC~~~i----~ip~~TtCgHtFCslCIR~hL~--~qp~CP~Cr~~~~e 71 (391)
T COG5432 23 DSMLRCRICDCRI----SIPCETTCGHTFCSLCIRRHLG--TQPFCPVCREDPCE 71 (391)
T ss_pred hhHHHhhhhhhee----ecceecccccchhHHHHHHHhc--CCCCCccccccHHh
Confidence 3446798887766 3678889999999999998753 45689999998864
No 114
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=66.47 E-value=3.6 Score=41.33 Aligned_cols=48 Identities=19% Similarity=0.405 Sum_probs=35.9
Q ss_pred cccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeE
Q 015475 101 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 156 (406)
Q Consensus 101 ~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII 156 (406)
.-||.|...+.+-.+- .-||+.||.+||...-. ..+++||+|. ++||+
T Consensus 275 LkCplc~~Llrnp~kT---~cC~~~fc~eci~~al~-dsDf~CpnC~----rkdvl 322 (427)
T COG5222 275 LKCPLCHCLLRNPMKT---PCCGHTFCDECIGTALL-DSDFKCPNCS----RKDVL 322 (427)
T ss_pred ccCcchhhhhhCcccC---ccccchHHHHHHhhhhh-hccccCCCcc----cccch
Confidence 6799999988764221 35999999999996654 3578999997 45654
No 115
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.45 E-value=5.8 Score=40.14 Aligned_cols=52 Identities=17% Similarity=0.294 Sum_probs=32.8
Q ss_pred ccccCCCCC-CCCC----eecCCCCEeeHhhHHHHHHh-cCCCCCCCCCCCCCCcccc
Q 015475 40 YCCALTFTP-FEDP----VCTADGSVFELMSITPYIRK-YGKHPVTGTPLKLEDLIPL 91 (406)
Q Consensus 40 ~~C~LSl~P-l~~P----V~t~~G~lf~ke~Il~~Ll~-~~~~Pvtg~~l~lkDLi~l 91 (406)
..|++|..- ...| ++...||.||..||...+.. .+.||+.+.++...++.+.
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q 61 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQ 61 (309)
T ss_pred CCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcccc
Confidence 479999774 2234 44478999999999997643 2345555555554444433
No 116
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=65.95 E-value=2.6 Score=48.23 Aligned_cols=61 Identities=18% Similarity=0.127 Sum_probs=54.3
Q ss_pred CCCCccccCCCCCCCCCeecC-CCCEeeHhhHHHHHHhcCCCCCCCCCCCCCCccccccccC
Q 015475 36 RLPFYCCALTFTPFEDPVCTA-DGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKN 96 (406)
Q Consensus 36 ~lpf~~C~LSl~Pl~~PV~t~-~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDLi~l~f~~n 96 (406)
...++--||...++.+||+-+ .|.+-|+..|..||+.-.+||+++.||+++++++.--.+.
T Consensus 867 vpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~~tdPFNR~pLt~d~v~pn~eLK~ 928 (943)
T KOG2042|consen 867 VPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSDCTDPFNREPLTEDMVSPNEELKA 928 (943)
T ss_pred CchhhhCccccccCCCCccCCcccccccHHHHHHHHhcCCCCccccccCchhhcCCCHHHHH
Confidence 445777789999999999996 9999999999999999999999999999999988765554
No 117
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=65.56 E-value=2.8 Score=31.11 Aligned_cols=17 Identities=12% Similarity=0.374 Sum_probs=12.6
Q ss_pred HHHHHhhccCCccccCCCCC
Q 015475 130 AIKELNIKTKNWKELLTDEP 149 (406)
Q Consensus 130 ai~~l~~~~k~~~c~vc~~~ 149 (406)
.++.| +.+|+||+|+.+
T Consensus 27 ~f~~L---p~~w~CP~C~a~ 43 (50)
T cd00730 27 PFEDL---PDDWVCPVCGAG 43 (50)
T ss_pred CHhHC---CCCCCCCCCCCc
Confidence 45556 368999999965
No 118
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=65.40 E-value=4.4 Score=44.83 Aligned_cols=103 Identities=16% Similarity=0.229 Sum_probs=65.1
Q ss_pred CeecCCCCEeeHhhHHHHHHhcCCCCCCCCCCCC-CCccccccccCCC---------CccccccccccccCceeEEEEcc
Q 015475 52 PVCTADGSVFELMSITPYIRKYGKHPVTGTPLKL-EDLIPLTFHKNAE---------GEYHCPVLNKVFTEFTHIVAVKT 121 (406)
Q Consensus 52 PV~t~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~l-kDLi~l~f~~n~~---------~~~~CPvt~k~f~~~t~~v~i~~ 121 (406)
++....+..|..+.||+-++..+.- ...+.. +.++..+.+...+ -.+.||+++..+.--.+-. .
T Consensus 251 sl~~~~v~~~t~~~llq~~~~~~~~---~~~~~~s~~~~~~~l~~~~d~~i~tt~~~vSL~CPl~~~Rm~~P~r~~---~ 324 (636)
T KOG2169|consen 251 SLSVYFVEGLTSKDLLQRLKQNGKI---NRNLSQSDALIKKKLTAGPDSEIATTSLRVSLNCPLSKMRMSLPARGH---T 324 (636)
T ss_pred ceEEEEecccCHHHHHHHHhccCCc---cCchhHhHHHhhcccccCCcccceeccceeEecCCcccceeecCCccc---c
Confidence 3444556778888898888865321 111222 2334555555442 2488999999886432222 5
Q ss_pred CCeeehHHHHH--HHhhccCCccccCCCCCCCCCCeEEecC
Q 015475 122 TGNVFCFEAIK--ELNIKTKNWKELLTDEPFTKEDLITIQN 160 (406)
Q Consensus 122 cG~V~s~~ai~--~l~~~~k~~~c~vc~~~f~~~DII~Lqd 160 (406)
|.|+=|.+++- +++.+.-.|+|+||++.+.-+++|..+.
T Consensus 325 CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~ 365 (636)
T KOG2169|consen 325 CKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGLIIDGY 365 (636)
T ss_pred cccceecchhhhHHhccCCCeeeCccCCccccccchhhhHH
Confidence 88776666654 4455556799999999999888887543
No 119
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=64.88 E-value=2.2 Score=33.40 Aligned_cols=48 Identities=27% Similarity=0.517 Sum_probs=26.0
Q ss_pred ccccCCCCCCCCCeec-CCCCEeeHhhHHHHHHhcCCCCCCCCCCCCCCcc
Q 015475 40 YCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLI 89 (406)
Q Consensus 40 ~~C~LSl~Pl~~PV~t-~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDLi 89 (406)
-.|+++...|+.||+. .-.|+|+..+|-+.|-. .+|+-..|.-.+||.
T Consensus 8 LrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw~qD~~ 56 (65)
T PF14835_consen 8 LRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS--ECPVCHTPAWIQDIQ 56 (65)
T ss_dssp TS-SSS-S--SS-B---SSS--B-TTTGGGGTTT--B-SSS--B-S-SS--
T ss_pred cCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC--CCCCcCChHHHHHHH
Confidence 4699999999999986 88999999999776663 599988888888874
No 120
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=64.61 E-value=5.2 Score=28.24 Aligned_cols=30 Identities=20% Similarity=0.421 Sum_probs=25.1
Q ss_pred cccCCCCCC---CCCeecCCCCEeeHhhHHHHH
Q 015475 41 CCALTFTPF---EDPVCTADGSVFELMSITPYI 70 (406)
Q Consensus 41 ~C~LSl~Pl---~~PV~t~~G~lf~ke~Il~~L 70 (406)
+|.++++++ ..|+++.=||+|+..+|....
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~ 33 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK 33 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc
Confidence 477777777 467888999999999999887
No 121
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=64.38 E-value=7 Score=32.27 Aligned_cols=52 Identities=27% Similarity=0.537 Sum_probs=37.5
Q ss_pred CCCCCCc-cccCCCCCCCC-Ceec-CCCCEeeHhhHHHHHHhc---CCCCCCCCCCCC
Q 015475 34 FKRLPFY-CCALTFTPFED-PVCT-ADGSVFELMSITPYIRKY---GKHPVTGTPLKL 85 (406)
Q Consensus 34 ~~~lpf~-~C~LSl~Pl~~-PV~t-~~G~lf~ke~Il~~Ll~~---~~~Pvtg~~l~l 85 (406)
..|.+|+ +|+-+..|-.+ |++- .-||.|-.-+|++||..+ +++|.-+++...
T Consensus 26 ICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 26 ICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred eEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 4566666 45667777665 7665 789999999999999964 567766655443
No 122
>PF14353 CpXC: CpXC protein
Probab=62.58 E-value=7.5 Score=33.66 Aligned_cols=57 Identities=19% Similarity=0.158 Sum_probs=35.6
Q ss_pred ccccccccccccCceeEEEEccCCeeehH-HHHHHHhhcc--CCccccCCCCCCCCCCeEEecCCC
Q 015475 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCF-EAIKELNIKT--KNWKELLTDEPFTKEDLITIQNPN 162 (406)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~cG~V~s~-~ai~~l~~~~--k~~~c~vc~~~f~~~DII~Lqdp~ 162 (406)
++.||.|+..|. +-+++.=|+-.. +..+++- .. -.+.||.||..|.-.--+...||.
T Consensus 1 ~itCP~C~~~~~-----~~v~~~I~~~~~p~l~e~il-~g~l~~~~CP~Cg~~~~~~~p~lY~D~~ 60 (128)
T PF14353_consen 1 EITCPHCGHEFE-----FEVWTSINADEDPELKEKIL-DGSLFSFTCPSCGHKFRLEYPLLYHDPE 60 (128)
T ss_pred CcCCCCCCCeeE-----EEEEeEEcCcCCHHHHHHHH-cCCcCEEECCCCCCceecCCCEEEEcCC
Confidence 367999999996 334444444333 3344443 21 246899999999866666666665
No 123
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=61.46 E-value=3.2 Score=39.23 Aligned_cols=58 Identities=29% Similarity=0.384 Sum_probs=33.3
Q ss_pred CCeec-CCCCEe-eHhhHHHHHHhcC-CCCCCCCCCCCCCcccccccc---CC--CCccccccccccccCceeE
Q 015475 51 DPVCT-ADGSVF-ELMSITPYIRKYG-KHPVTGTPLKLEDLIPLTFHK---NA--EGEYHCPVLNKVFTEFTHI 116 (406)
Q Consensus 51 ~PV~t-~~G~lf-~ke~Il~~Ll~~~-~~Pvtg~~l~lkDLi~l~f~~---n~--~~~~~CPvt~k~f~~~t~~ 116 (406)
.||+= ++-.+| ..+.++..|.+-| .+-.|. |.+.+-. |. .--|+||.|+|+|.+++|-
T Consensus 38 ~PVlF~rdK~I~qs~e~ai~~lE~e~KlWrete--------I~I~~g~p~VNE~TkkIYICPFTGKVF~DNt~~ 103 (238)
T PF10915_consen 38 QPVLFVRDKIIFQSAEDAIRILEEEGKLWRETE--------IKIQSGKPSVNEQTKKIYICPFTGKVFGDNTHP 103 (238)
T ss_pred CceeeecchhhccCHHHHHHHHHHhcchheeee--------EEEecCCcccccccceEEEcCCcCccccCCCCC
Confidence 35554 556666 4667777776543 222221 2222222 22 2349999999999998764
No 124
>PHA02926 zinc finger-like protein; Provisional
Probab=61.09 E-value=7.4 Score=37.71 Aligned_cols=34 Identities=12% Similarity=0.210 Sum_probs=28.4
Q ss_pred CccccCCCCCCCC---------CeecCCCCEeeHhhHHHHHHh
Q 015475 39 FYCCALTFTPFED---------PVCTADGSVFELMSITPYIRK 72 (406)
Q Consensus 39 f~~C~LSl~Pl~~---------PV~t~~G~lf~ke~Il~~Ll~ 72 (406)
-..|+||++...+ ++...-||+||..||-.|-..
T Consensus 170 E~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~ 212 (242)
T PHA02926 170 EKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRT 212 (242)
T ss_pred CCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHh
Confidence 4789999987643 467788999999999999885
No 125
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=60.85 E-value=3.2 Score=40.31 Aligned_cols=44 Identities=16% Similarity=0.182 Sum_probs=33.3
Q ss_pred cccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCC
Q 015475 101 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPF 150 (406)
Q Consensus 101 ~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f 150 (406)
+||-.|+.--. .+-++|-.|+||||..|+..-- .-.|++|.++.
T Consensus 4 VhCn~C~~~~~--~~~f~LTaC~HvfC~~C~k~~~----~~~C~lCkk~i 47 (233)
T KOG4739|consen 4 VHCNKCFRFPS--QDPFFLTACRHVFCEPCLKASS----PDVCPLCKKSI 47 (233)
T ss_pred EEeccccccCC--CCceeeeechhhhhhhhcccCC----cccccccccee
Confidence 46887776554 4456788999999999997553 22899999983
No 126
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=60.05 E-value=5.1 Score=37.25 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=24.6
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCC
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~ 152 (406)
...|+||-|+..|+- .+|++ .++.||+||.++..
T Consensus 115 ~~~Y~Cp~C~~rytf---------------~eA~~------~~F~Cp~Cg~~L~~ 148 (178)
T PRK06266 115 NMFFFCPNCHIRFTF---------------DEAME------YGFRCPQCGEMLEE 148 (178)
T ss_pred CCEEECCCCCcEEeH---------------HHHhh------cCCcCCCCCCCCee
Confidence 346889988877753 23443 37899999998876
No 127
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=59.62 E-value=5.3 Score=40.85 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=38.8
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeE
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 156 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII 156 (406)
+..| ||+|..++.=.-+=+.-.+||--+|.=|...+... =+.+||.|-..|+++.+-
T Consensus 13 eed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~-lngrcpacrr~y~denv~ 69 (480)
T COG5175 13 EEDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN-LNGRCPACRRKYDDENVR 69 (480)
T ss_pred cccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhh-ccCCChHhhhhcccccee
Confidence 3445 99999988433334556688866555555544332 267999999999988873
No 128
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.21 E-value=5.7 Score=39.96 Aligned_cols=46 Identities=15% Similarity=0.083 Sum_probs=34.3
Q ss_pred ccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCC
Q 015475 102 HCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (406)
Q Consensus 102 ~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~ 152 (406)
.||||.-..+-- .+-.|+|+||+.||+-.....+ ..|.+|-.||+.
T Consensus 9 eC~IC~nt~n~P----v~l~C~HkFCyiCiKGsy~ndk-~~CavCR~pids 54 (324)
T KOG0824|consen 9 ECLICYNTGNCP----VNLYCFHKFCYICIKGSYKNDK-KTCAVCRFPIDS 54 (324)
T ss_pred cceeeeccCCcC----ccccccchhhhhhhcchhhcCC-CCCceecCCCCc
Confidence 588887665422 4558999999999998864322 349999999985
No 129
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=56.89 E-value=10 Score=37.76 Aligned_cols=55 Identities=18% Similarity=0.346 Sum_probs=38.7
Q ss_pred CCccccccccccccCcee---------------EEEEccCCeee-hHHHHHHHhhccC-CccccCCCCCCCC
Q 015475 98 EGEYHCPVLNKVFTEFTH---------------IVAVKTTGNVF-CFEAIKELNIKTK-NWKELLTDEPFTK 152 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~---------------~v~i~~cG~V~-s~~ai~~l~~~~k-~~~c~vc~~~f~~ 152 (406)
.+.|+||-|+|.....+. ..--..||-|| +.-|++-....-+ ...|.+||+.|.+
T Consensus 128 ~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSR 199 (279)
T KOG2462|consen 128 HPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSR 199 (279)
T ss_pred CCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccc
Confidence 568999999998876551 12223588888 6777776654333 4679999999986
No 130
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.78 E-value=8.2 Score=39.67 Aligned_cols=62 Identities=15% Similarity=0.134 Sum_probs=45.8
Q ss_pred CCCccccccccCCC--CccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCC
Q 015475 85 LEDLIPLTFHKNAE--GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDE 148 (406)
Q Consensus 85 lkDLi~l~f~~n~~--~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~ 148 (406)
++++-...|....+ ....|.||...|...-++.+ -||+|.|--.||+---... -..||+|-.
T Consensus 212 l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRi-LPC~H~FH~~CIDpWL~~~-r~~CPvCK~ 275 (348)
T KOG4628|consen 212 LKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRI-LPCSHKFHVNCIDPWLTQT-RTFCPVCKR 275 (348)
T ss_pred HhhCCcEEeccccccCCCceEEEeecccccCCeeeE-ecCCCchhhccchhhHhhc-CccCCCCCC
Confidence 55665666666542 22589999999998887776 5999999999999775422 124999986
No 131
>PRK00969 hypothetical protein; Provisional
Probab=56.23 E-value=9.6 Score=40.90 Aligned_cols=35 Identities=26% Similarity=0.244 Sum_probs=27.1
Q ss_pred CccEEEEEec--ceeEEEEEcCCCChhHHHHHHHHHh
Q 015475 347 KKGYVQLHTT--HGDLNIELHCDITPRSCENFITLCE 381 (406)
Q Consensus 347 ~~~~v~l~T~--~G~i~ieL~~d~aP~t~~NF~~L~~ 381 (406)
..+.|++.+- .--|.||||.+.||+||+-|+.+..
T Consensus 365 ~~~kV~~~~i~~~~vi~IeLydd~AP~s~~yFR~~tG 401 (508)
T PRK00969 365 KEKKVKTKGIPKDKLIEIELYDDKAPRTVWYFRKVTG 401 (508)
T ss_pred hcCcEEEEeeCHHHEEEEEEcCcCCchHHHHHHHhcC
Confidence 3455666553 3458999999999999999998763
No 132
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=54.40 E-value=8.4 Score=35.07 Aligned_cols=35 Identities=20% Similarity=0.145 Sum_probs=24.2
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCC
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~ 153 (406)
...|+||-|...|+- .+|++ .++.||+||.++...
T Consensus 107 ~~~Y~Cp~c~~r~tf---------------~eA~~------~~F~Cp~Cg~~L~~~ 141 (158)
T TIGR00373 107 NMFFICPNMCVRFTF---------------NEAME------LNFTCPRCGAMLDYL 141 (158)
T ss_pred CCeEECCCCCcEeeH---------------HHHHH------cCCcCCCCCCEeeec
Confidence 446889988777652 34443 378999999886543
No 133
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=54.37 E-value=6.5 Score=40.95 Aligned_cols=54 Identities=24% Similarity=0.421 Sum_probs=42.4
Q ss_pred CccccCCCCCCCC--Ceec--CCCCEeeHhhHHHHHHh--cCCCCCCCCCCCCCCccccc
Q 015475 39 FYCCALTFTPFED--PVCT--ADGSVFELMSITPYIRK--YGKHPVTGTPLKLEDLIPLT 92 (406)
Q Consensus 39 f~~C~LSl~Pl~~--PV~t--~~G~lf~ke~Il~~Ll~--~~~~Pvtg~~l~lkDLi~l~ 92 (406)
-+||+..+.+|.+ -||. ..|++|+.|+|.+.=++ +.++=+|-+|.+..|||.|.
T Consensus 101 eyhcPvlfk~FT~~sHIvAv~TTGNvy~~eai~~LNiK~knwkdLltdepFtR~DiItiQ 160 (518)
T KOG0883|consen 101 EYHCPVLFKVFTRFSHIVAVRTTGNVYSWEAIEELNIKTKNWKDLLTDEPFTRADIITIQ 160 (518)
T ss_pred cccCceeeeeecccceEEEEEecCceeeHHHHHHhCcchhhHHHhhccCCcchhceeeec
Confidence 5799999999885 3554 68999999999887553 34566788888888888775
No 134
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.63 E-value=7.6 Score=40.65 Aligned_cols=43 Identities=19% Similarity=0.286 Sum_probs=34.2
Q ss_pred CCCccccCCCCCCCCCeecCCCCEeeHhhHHHHHHhcCCCCCC
Q 015475 37 LPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVT 79 (406)
Q Consensus 37 lpf~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~~~~~Pvt 79 (406)
..-+-|++|..-|..||+++.||.|+..||..-|-....||..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~C 124 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLC 124 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccc
Confidence 3345677999999999999999999999988855544556653
No 135
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=53.06 E-value=4.3 Score=45.58 Aligned_cols=51 Identities=18% Similarity=0.185 Sum_probs=40.3
Q ss_pred cccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCC
Q 015475 101 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED 154 (406)
Q Consensus 101 ~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~D 154 (406)
-.||+|-+.|.+.- +..-++|||.||..||.-...-. -.||+|-..|.+-+
T Consensus 124 ~~CP~Ci~s~~DqL-~~~~k~c~H~FC~~Ci~sWsR~a--qTCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQL-EESEKHTAHYFCEECVGSWSRCA--QTCPVDRGEFGEVK 174 (1134)
T ss_pred hhhhHHHHHHHHHh-hccccccccccHHHHhhhhhhhc--ccCchhhhhhheee
Confidence 46999999998753 44567899999999999887533 37999999998643
No 136
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=52.56 E-value=8.4 Score=29.17 Aligned_cols=19 Identities=21% Similarity=0.245 Sum_probs=14.0
Q ss_pred CccccCCCCCCCCCCeEEe
Q 015475 140 NWKELLTDEPFTKEDLITI 158 (406)
Q Consensus 140 ~~~c~vc~~~f~~~DII~L 158 (406)
..+|++|+++|+..|.|++
T Consensus 5 ~~~C~~Cg~~~~~~dDiVv 23 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVV 23 (54)
T ss_pred CccChhhCCcccCCCCEEE
Confidence 4589999999985555543
No 137
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=51.87 E-value=8 Score=36.85 Aligned_cols=47 Identities=15% Similarity=0.196 Sum_probs=34.8
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCC
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPF 150 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f 150 (406)
.-.|.|-||.+.|.. .+ +-.|||-||..|.-.--. +...|-+|++.-
T Consensus 194 ~IPF~C~iCKkdy~s--pv--vt~CGH~FC~~Cai~~y~--kg~~C~~Cgk~t 240 (259)
T COG5152 194 KIPFLCGICKKDYES--PV--VTECGHSFCSLCAIRKYQ--KGDECGVCGKAT 240 (259)
T ss_pred CCceeehhchhhccc--hh--hhhcchhHHHHHHHHHhc--cCCcceecchhh
Confidence 346999999999954 33 468999999887654433 456899999653
No 138
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=50.89 E-value=11 Score=39.29 Aligned_cols=23 Identities=35% Similarity=0.277 Sum_probs=20.8
Q ss_pred eEEEEEcCCCChhHHHHHHHHHh
Q 015475 359 DLNIELHCDITPRSCENFITLCE 381 (406)
Q Consensus 359 ~i~ieL~~d~aP~t~~NF~~L~~ 381 (406)
-|.||||.+.||+++|-|+.+..
T Consensus 377 iieIELyed~APrSv~yFRr~t~ 399 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRSTG 399 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhcc
Confidence 48999999999999999998763
No 139
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=50.76 E-value=9.3 Score=35.33 Aligned_cols=10 Identities=10% Similarity=-0.070 Sum_probs=8.1
Q ss_pred CccccCCCCC
Q 015475 140 NWKELLTDEP 149 (406)
Q Consensus 140 ~~~c~vc~~~ 149 (406)
+++||+|+.|
T Consensus 149 P~~CPiCga~ 158 (166)
T COG1592 149 PEVCPICGAP 158 (166)
T ss_pred CCcCCCCCCh
Confidence 5699999954
No 140
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=48.79 E-value=10 Score=37.79 Aligned_cols=55 Identities=11% Similarity=0.185 Sum_probs=45.3
Q ss_pred ccccCCCCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCC
Q 015475 92 TFHKNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDE 148 (406)
Q Consensus 92 ~f~~n~~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~ 148 (406)
++......+..||++...+......+-.-+|||....+++++... .++.||+|.+
T Consensus 150 H~c~e~~~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~--~~y~CP~C~~ 204 (276)
T KOG1940|consen 150 HKCVERSSEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMIC--EGYTCPICSK 204 (276)
T ss_pred cchhhhcccCCCchhHHHhccccccCCccCcccchHHHHHHHHhc--cCCCCCcccc
Confidence 444444566779999999988887787889999999999999986 3499999986
No 141
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=48.26 E-value=16 Score=39.09 Aligned_cols=45 Identities=11% Similarity=0.048 Sum_probs=26.6
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCC
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEP 149 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~ 149 (406)
...|.|++|+-+.....- -+...+-.--.++.| +.+|.||+|+.+
T Consensus 423 ~~~~~c~~c~~~yd~~~g----~~~~~~~~gt~~~~l---p~~~~cp~c~~~ 467 (479)
T PRK05452 423 GPRMQCSVCQWIYDPAKG----EPMQDVAPGTPWSEV---PDNFLCPECSLG 467 (479)
T ss_pred CCeEEECCCCeEECCCCC----CcccCCCCCCChhhC---CCCCcCcCCCCc
Confidence 456888777766644210 012223333356666 469999999976
No 142
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=46.99 E-value=15 Score=39.30 Aligned_cols=34 Identities=32% Similarity=0.382 Sum_probs=26.7
Q ss_pred CccEEEEEe--cceeEEEEEcCCCChhHHHHHHHHH
Q 015475 347 KKGYVQLHT--THGDLNIELHCDITPRSCENFITLC 380 (406)
Q Consensus 347 ~~~~v~l~T--~~G~i~ieL~~d~aP~t~~NF~~L~ 380 (406)
..+.|++.+ ...-|.|+||.+.||+||+-|+.+.
T Consensus 362 ~~~kV~~~~v~~~~vi~IeLydd~AP~s~~yFRk~t 397 (503)
T TIGR03268 362 KEGKVKVEGVPKDKVIEIELYDDNAPRSVWYFRKFT 397 (503)
T ss_pred hcCcEEEEeeChHhEEEEEEcccCCchHHHHHHHhc
Confidence 345566655 3345899999999999999999876
No 143
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=46.88 E-value=4.2 Score=41.20 Aligned_cols=54 Identities=20% Similarity=0.333 Sum_probs=36.6
Q ss_pred Ccccccc--ccccccCceeEEEEccCCeee-------hHHHHHHHhhccCCccccCCCCCCCC
Q 015475 99 GEYHCPV--LNKVFTEFTHIVAVKTTGNVF-------CFEAIKELNIKTKNWKELLTDEPFTK 152 (406)
Q Consensus 99 ~~~~CPv--t~k~f~~~t~~v~i~~cG~V~-------s~~ai~~l~~~~k~~~c~vc~~~f~~ 152 (406)
-.|-||| |.|...+..-+-|-+--||.- +.+-.+-|..+.|..+|++|++.|+-
T Consensus 348 KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKN 410 (423)
T COG5189 348 KPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKN 410 (423)
T ss_pred ceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhcc
Confidence 4699999 667776665555555555511 33444445667789999999999863
No 144
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=45.64 E-value=5.4 Score=29.26 Aligned_cols=17 Identities=18% Similarity=0.554 Sum_probs=9.9
Q ss_pred HHHHHhhccCCccccCCCCC
Q 015475 130 AIKELNIKTKNWKELLTDEP 149 (406)
Q Consensus 130 ai~~l~~~~k~~~c~vc~~~ 149 (406)
.+++| +.+|.||+|+.+
T Consensus 27 ~F~~L---p~~w~CP~C~a~ 43 (47)
T PF00301_consen 27 PFEDL---PDDWVCPVCGAP 43 (47)
T ss_dssp -GGGS----TT-B-TTTSSB
T ss_pred CHHHC---CCCCcCcCCCCc
Confidence 45555 478999999965
No 145
>KOG1703 consensus Adaptor protein Enigma and related PDZ-LIM proteins [Signal transduction mechanisms; Cytoskeleton]
Probab=44.66 E-value=17 Score=38.82 Aligned_cols=99 Identities=15% Similarity=0.186 Sum_probs=66.5
Q ss_pred ccccCCCCCCCCCee-cCCCCEeeHhhHHHHHHhcC---CCCCCCCCCCCCCccccccccCCCCccccccccccccCcee
Q 015475 40 YCCALTFTPFEDPVC-TADGSVFELMSITPYIRKYG---KHPVTGTPLKLEDLIPLTFHKNAEGEYHCPVLNKVFTEFTH 115 (406)
Q Consensus 40 ~~C~LSl~Pl~~PV~-t~~G~lf~ke~Il~~Ll~~~---~~Pvtg~~l~lkDLi~l~f~~n~~~~~~CPvt~k~f~~~t~ 115 (406)
..|..+...+.+.-. ..+|++|+.++..+|+.-.. ..|+.++.+..- .-.|+.+ .|.|-.|.+.|.+.
T Consensus 331 ~~c~~~~~~~~~~~~~~~~g~~~c~~~~~~~~~p~C~~C~~~i~~~~v~a~---~~~wH~~---cf~C~~C~~~~~~~-- 402 (479)
T KOG1703|consen 331 FSCEVCAIVILDGGPRELDGKILCHECFHAPFRPNCKRCLLPILEEGVCAL---GRLWHPE---CFVCADCGKPLKNS-- 402 (479)
T ss_pred eeeccccccccCCCccccCCCccHHHHHHHhhCccccccCCchHHhHhhhc---cCeechh---ceeeecccCCCCCC--
Confidence 445555555444433 47899999999999988543 345555554443 4445555 68898887777765
Q ss_pred EEEEccCCeeehHHHHHHHhhccCCccccCCCCCCC
Q 015475 116 IVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 151 (406)
Q Consensus 116 ~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~ 151 (406)
.+....|..||+.+..++. ..+|..|..++.
T Consensus 403 -~~~~~~~~pyce~~~~~~~----~~~~~~~~~p~~ 433 (479)
T KOG1703|consen 403 -SFFESDGEPYCEDHYKKLF----TTKCDYCKKPVE 433 (479)
T ss_pred -cccccCCccchhhhHhhhc----cccchhccchhH
Confidence 4445899999999999986 236777776643
No 146
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=44.46 E-value=24 Score=31.99 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=19.3
Q ss_pred ceeEEEEEcCCCChhHHHHHHHHH
Q 015475 357 HGDLNIELHCDITPRSCENFITLC 380 (406)
Q Consensus 357 ~G~i~ieL~~d~aP~t~~NF~~L~ 380 (406)
...++.+|..|.||+||+-|..+-
T Consensus 7 g~~~~A~l~~d~AP~Tcaa~~~~L 30 (147)
T PF12903_consen 7 GVSFTARLLDDKAPKTCAAFWEAL 30 (147)
T ss_dssp TEEEEEEE-TTTSHHHHHHHHHH-
T ss_pred CeEEEEEEcccCChHHHHHHHHhC
Confidence 346889999999999999999764
No 147
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=44.00 E-value=8.1 Score=36.79 Aligned_cols=45 Identities=27% Similarity=0.470 Sum_probs=36.0
Q ss_pred CCCCCccccCCCCCCCCCeecCCCCEeeHhhHHHHHHhcCCCCCCC
Q 015475 35 KRLPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTG 80 (406)
Q Consensus 35 ~~lpf~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~~~~~Pvtg 80 (406)
...|| .|-||..-++.||++..||-||-.|.+.-..+-..|-+.|
T Consensus 193 e~IPF-~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cg 237 (259)
T COG5152 193 EKIPF-LCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCG 237 (259)
T ss_pred CCCce-eehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecc
Confidence 34455 6899999999999999999999999888777655555544
No 148
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.52 E-value=15 Score=37.89 Aligned_cols=42 Identities=21% Similarity=0.426 Sum_probs=35.1
Q ss_pred ccccCCCCCCC--CCeec-CCCCEeeHhhHHHHHHhcCC-CCCCCC
Q 015475 40 YCCALTFTPFE--DPVCT-ADGSVFELMSITPYIRKYGK-HPVTGT 81 (406)
Q Consensus 40 ~~C~LSl~Pl~--~PV~t-~~G~lf~ke~Il~~Ll~~~~-~Pvtg~ 81 (406)
+.|+||++-++ +-+.- +-+|.|-..||=+||..+++ ||+...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~ 275 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKR 275 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCC
Confidence 69999999988 34554 88999999999999999865 888754
No 149
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=42.78 E-value=13 Score=40.18 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=40.5
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhc---cCCccccCCCCCCCCC
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK---TKNWKELLTDEPFTKE 153 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~---~k~~~c~vc~~~f~~~ 153 (406)
.++..|-+|..+--+ .....|.|+||.-||++.... ..+..||+|..+++-+
T Consensus 534 k~~~~C~lc~d~aed----~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 534 KGEVECGLCHDPAED----YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred cCceeecccCChhhh----hHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 678899888777654 234679999999999888643 3468899999999855
No 150
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=41.88 E-value=4 Score=45.78 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=25.0
Q ss_pred cccCCCCCCCCCee-c--CCCCEeeHhhHHHHHHhcCCCCCCCC
Q 015475 41 CCALTFTPFEDPVC-T--ADGSVFELMSITPYIRKYGKHPVTGT 81 (406)
Q Consensus 41 ~C~LSl~Pl~~PV~-t--~~G~lf~ke~Il~~Ll~~~~~Pvtg~ 81 (406)
.|++|++-+.+=.+ + ..||.||..||..|-.--.+||+...
T Consensus 125 ~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~ 168 (1134)
T KOG0825|consen 125 QCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRG 168 (1134)
T ss_pred hhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhh
Confidence 34444444444333 2 45788888888888776667777543
No 151
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=41.60 E-value=10 Score=36.20 Aligned_cols=56 Identities=21% Similarity=0.240 Sum_probs=30.6
Q ss_pred ccccccccccccCceeEEEEccCCe-eehHHH-----HHHHhh-ccCCccccCCCCCCCCCCeEEec
Q 015475 100 EYHCPVLNKVFTEFTHIVAVKTTGN-VFCFEA-----IKELNI-KTKNWKELLTDEPFTKEDLITIQ 159 (406)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~cG~-V~s~~a-----i~~l~~-~~k~~~c~vc~~~f~~~DII~Lq 159 (406)
++.||||+++|+-. .+++.+- |...+. .+.+|- -=.-|.||.||=.|...|.=.|.
T Consensus 5 ~~~CPvC~~~F~~~----~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~~F~~l~ 67 (214)
T PF09986_consen 5 KITCPVCGKEFKTK----KVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEEDFEKLS 67 (214)
T ss_pred ceECCCCCCeeeee----EEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCcccccccccCC
Confidence 57899999999642 2233222 221100 001110 00137899999999888866543
No 152
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.10 E-value=28 Score=34.76 Aligned_cols=43 Identities=16% Similarity=0.096 Sum_probs=35.3
Q ss_pred CccccCCCCCCCCCeec-CCCCEeeHhhHHHHHHhc--CCCCCCCC
Q 015475 39 FYCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKY--GKHPVTGT 81 (406)
Q Consensus 39 f~~C~LSl~Pl~~PV~t-~~G~lf~ke~Il~~Ll~~--~~~Pvtg~ 81 (406)
=..|++|..|-..|.+. +.||+||.-||...++-. =+||..|+
T Consensus 239 ~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~ 284 (298)
T KOG2879|consen 239 DTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGE 284 (298)
T ss_pred CceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCC
Confidence 45799999999999888 699999999999988732 26776654
No 153
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=40.55 E-value=26 Score=34.90 Aligned_cols=85 Identities=18% Similarity=0.231 Sum_probs=56.7
Q ss_pred CCCCEeeHhhHHH-HHHhcC---CCCCCCCCCCCCCccccccccCC-CCccccccccccccCceeEEEEccCCeeehHHH
Q 015475 56 ADGSVFELMSITP-YIRKYG---KHPVTGTPLKLEDLIPLTFHKNA-EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEA 130 (406)
Q Consensus 56 ~~G~lf~ke~Il~-~Ll~~~---~~Pvtg~~l~lkDLi~l~f~~n~-~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~a 130 (406)
.-|.+|-.+-.|. +|+.|+ .|++.|+.++.-=|++=|+-.-. +-.|.||.|.|.|.+.+.+-+
T Consensus 166 ~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRA------------ 233 (279)
T KOG2462|consen 166 YCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRA------------ 233 (279)
T ss_pred CCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHH------------
Confidence 4578888776665 455665 58888988887777766665542 446999999999998764321
Q ss_pred HHHHhhccCCccccCCCCCCCC
Q 015475 131 IKELNIKTKNWKELLTDEPFTK 152 (406)
Q Consensus 131 i~~l~~~~k~~~c~vc~~~f~~ 152 (406)
=-+=-...|.+.|..|++-|..
T Consensus 234 HmQTHS~~K~~qC~~C~KsFsl 255 (279)
T KOG2462|consen 234 HMQTHSDVKKHQCPRCGKSFAL 255 (279)
T ss_pred HHHhhcCCccccCcchhhHHHH
Confidence 1111112356788888888864
No 154
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=39.62 E-value=6.9 Score=39.60 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=24.3
Q ss_pred cCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeE
Q 015475 121 TTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 156 (406)
Q Consensus 121 ~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII 156 (406)
+|-||||++|...-. .-.|+.|+++..+-.-|
T Consensus 108 PCkHvFCl~CAr~~~----dK~Cp~C~d~VqrIeq~ 139 (389)
T KOG2932|consen 108 PCKHVFCLECARSDS----DKICPLCDDRVQRIEQI 139 (389)
T ss_pred ccchhhhhhhhhcCc----cccCcCcccHHHHHHHh
Confidence 899999999986543 23799999887654433
No 155
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.71 E-value=16 Score=37.71 Aligned_cols=52 Identities=19% Similarity=0.385 Sum_probs=30.1
Q ss_pred CCCCcc-------ccCCCCCCC---CCeecCCCCEeeHhhHHHHHHhcC-CCCCCCCCCCCCC
Q 015475 36 RLPFYC-------CALTFTPFE---DPVCTADGSVFELMSITPYIRKYG-KHPVTGTPLKLED 87 (406)
Q Consensus 36 ~lpf~~-------C~LSl~Pl~---~PV~t~~G~lf~ke~Il~~Ll~~~-~~Pvtg~~l~lkD 87 (406)
.|||.+ |.||+.-+. .|++=+.|++|-..+|+.|=...| .||++++.+.-.+
T Consensus 320 ~LPfah~~~S~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~~ 382 (389)
T KOG0396|consen 320 ALPFAHHAQSRLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYSE 382 (389)
T ss_pred cCCchhhhhhHHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHHH
Confidence 567765 445555554 366667788888877777754442 3444444443333
No 156
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=37.47 E-value=16 Score=26.92 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=11.3
Q ss_pred HHHHHHhhccCCccccCCCCCCCCC
Q 015475 129 EAIKELNIKTKNWKELLTDEPFTKE 153 (406)
Q Consensus 129 ~ai~~l~~~~k~~~c~vc~~~f~~~ 153 (406)
+.++.|.. ....||||+.+|+.+
T Consensus 11 k~i~~l~~--~~~~CPlC~r~l~~e 33 (54)
T PF04423_consen 11 KYIEELKE--AKGCCPLCGRPLDEE 33 (54)
T ss_dssp HHHHHHTT---SEE-TTT--EE-HH
T ss_pred HHHHHHhc--CCCcCCCCCCCCCHH
Confidence 44555653 223899999999753
No 157
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.89 E-value=19 Score=38.96 Aligned_cols=47 Identities=15% Similarity=0.266 Sum_probs=40.3
Q ss_pred CCCCCccccCCCCCCCC-----CeecCCCCEeeHhhHHHHHHhcCCCCCCCC
Q 015475 35 KRLPFYCCALTFTPFED-----PVCTADGSVFELMSITPYIRKYGKHPVTGT 81 (406)
Q Consensus 35 ~~lpf~~C~LSl~Pl~~-----PV~t~~G~lf~ke~Il~~Ll~~~~~Pvtg~ 81 (406)
.+.--+.|+||.+.+.. |-.-+.||+|.-.|+..|+.....||...-
T Consensus 287 ~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~ 338 (543)
T KOG0802|consen 287 LALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRT 338 (543)
T ss_pred hhhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchh
Confidence 34447899999999998 566689999999999999999889998765
No 158
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=36.67 E-value=20 Score=37.85 Aligned_cols=40 Identities=23% Similarity=0.392 Sum_probs=25.8
Q ss_pred CccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCC
Q 015475 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (406)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~ 153 (406)
..|.||+|.+.|+. .+|+.-|.-....+.|-.|+.+...+
T Consensus 127 ~~Y~Cp~C~kkyt~---------------Lea~~L~~~~~~~F~C~~C~gelveD 166 (436)
T KOG2593|consen 127 AGYVCPNCQKKYTS---------------LEALQLLDNETGEFHCENCGGELVED 166 (436)
T ss_pred ccccCCccccchhh---------------hHHHHhhcccCceEEEecCCCchhcc
Confidence 36999999999873 45555554333456677777666543
No 159
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.43 E-value=14 Score=40.88 Aligned_cols=56 Identities=11% Similarity=0.104 Sum_probs=38.7
Q ss_pred cccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEEecCCCCcc
Q 015475 101 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQNPNALD 165 (406)
Q Consensus 101 ~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~Lqdp~~~~ 165 (406)
..|+||--.|-..+..-+.-.|||++|..|++.+- +-.|+ ..++|..++-++.++.
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly----n~scp-----~~~De~~~~~~~~e~p 67 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY----NASCP-----TKRDEDSSLMQLKEEP 67 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHh----hccCC-----CCccccchhcChhhcc
Confidence 46999977776665554455799999999999985 45676 3344555555566544
No 160
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.18 E-value=33 Score=33.91 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=39.0
Q ss_pred CCCCCCccccCCCCCCCCC--eec--CCCCEeeHhhHHHHHHhcCCCCCCCCCCCCCCccccccc
Q 015475 34 FKRLPFYCCALTFTPFEDP--VCT--ADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFH 94 (406)
Q Consensus 34 ~~~lpf~~C~LSl~Pl~~P--V~t--~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDLi~l~f~ 94 (406)
+.+..-+.|+|+..+|..- .|. ..|++|...++-+.= -..|++.|.+..-+|+|.||-+
T Consensus 106 D~~~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~~~dvIvlNg~ 168 (293)
T KOG3113|consen 106 DTQRARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQEDDVIVLNGT 168 (293)
T ss_pred ccccceeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCcccccCeEeeCCC
Confidence 3344567899999998854 333 779999988876652 3456666666666666655543
No 161
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=34.73 E-value=19 Score=40.26 Aligned_cols=52 Identities=17% Similarity=0.324 Sum_probs=41.4
Q ss_pred cccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEE
Q 015475 101 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (406)
Q Consensus 101 ~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~ 157 (406)
+.|++|-. .. -+.|-.|||++|.+|+.+...-..+..|++|-..+..++++.
T Consensus 455 ~~c~ic~~----~~-~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s 506 (674)
T KOG1001|consen 455 HWCHICCD----LD-SFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLS 506 (674)
T ss_pred cccccccc----cc-cceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhh
Confidence 78999988 22 245779999999999999976566668999998888777665
No 162
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=33.17 E-value=25 Score=28.81 Aligned_cols=46 Identities=15% Similarity=0.225 Sum_probs=33.7
Q ss_pred CCccccCCCCCCCCCeec----------------CCCCEeeHhhHHHHHHhcCCCCCCCCCC
Q 015475 38 PFYCCALTFTPFEDPVCT----------------ADGSVFELMSITPYIRKYGKHPVTGTPL 83 (406)
Q Consensus 38 pf~~C~LSl~Pl~~PV~t----------------~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l 83 (406)
|.+.|+|+-.++-++... .--|.|-.-+|-.||..++.||+..++.
T Consensus 19 ~id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w 80 (88)
T COG5194 19 PIDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTW 80 (88)
T ss_pred ccchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCcee
Confidence 356777777776654332 2358899999999999999999876654
No 163
>PHA02768 hypothetical protein; Provisional
Probab=32.42 E-value=21 Score=27.13 Aligned_cols=45 Identities=18% Similarity=0.375 Sum_probs=27.7
Q ss_pred ccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCC-CeEEe
Q 015475 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE-DLITI 158 (406)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~-DII~L 158 (406)
-|.||.|++.|+..+++.. -+.+=.++.+|..|++.|... ..|.|
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~--------------H~r~H~k~~kc~~C~k~f~~~s~l~~~ 50 (55)
T PHA02768 5 GYECPICGEIYIKRKSMIT--------------HLRKHNTNLKLSNCKRISLRTGEYIEI 50 (55)
T ss_pred ccCcchhCCeeccHHHHHH--------------HHHhcCCcccCCcccceecccceeEEE
Confidence 3789999999986544321 111111456899999988753 34443
No 164
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.61 E-value=10 Score=39.04 Aligned_cols=50 Identities=16% Similarity=0.253 Sum_probs=39.4
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCC
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 151 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~ 151 (406)
..+++||||.-.+.+. ...+.|+|-||.+||-.-.. ..+-.||-|-+.+.
T Consensus 41 ~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r-~gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALR-SGNNECPTCRKKLV 90 (381)
T ss_pred hhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHH-hcCCCCchHHhhcc
Confidence 4678999998888653 34578999999999987764 34668999988775
No 165
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.54 E-value=37 Score=34.50 Aligned_cols=44 Identities=23% Similarity=0.389 Sum_probs=34.5
Q ss_pred ccccCCCCCCC--CC-eecCCCCEeeHhhHHHHHHhcC-CCCCCCCCC
Q 015475 40 YCCALTFTPFE--DP-VCTADGSVFELMSITPYIRKYG-KHPVTGTPL 83 (406)
Q Consensus 40 ~~C~LSl~Pl~--~P-V~t~~G~lf~ke~Il~~Ll~~~-~~Pvtg~~l 83 (406)
--|+||+.-|. +- ++.+.-|.|-.-||-.||+.|+ +||+...++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~i 371 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAI 371 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCC
Confidence 35999988775 22 5569999999999999999764 788876554
No 166
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=31.33 E-value=25 Score=32.06 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=26.3
Q ss_pred cccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCC
Q 015475 101 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (406)
Q Consensus 101 ~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~ 152 (406)
+.||-|+-+++.--.-.++.+ ||++-. ..+|+.|+..|+-
T Consensus 1 m~cp~c~~~~~~~~~s~~~~~-~~~~~~-----------~~~c~~c~~~f~~ 40 (154)
T PRK00464 1 MRCPFCGHPDTRVIDSRPAED-GNAIRR-----------RRECLACGKRFTT 40 (154)
T ss_pred CcCCCCCCCCCEeEeccccCC-CCceee-----------eeeccccCCcceE
Confidence 469999887754333333434 877642 2379999999974
No 167
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.20 E-value=16 Score=36.37 Aligned_cols=52 Identities=15% Similarity=0.061 Sum_probs=37.9
Q ss_pred ccccccccccccCceeE------EEEccCCeeehHHHHHHHhhccCCccccCCCCCCC
Q 015475 100 EYHCPVLNKVFTEFTHI------VAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 151 (406)
Q Consensus 100 ~~~CPvt~k~f~~~t~~------v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~ 151 (406)
.-+|.||++.|-..-.- .+--.|+|||-+.||+--++-.|--.||-|-|+.+
T Consensus 224 d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred cchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 34899999988543210 12237999999999998887666667999987654
No 168
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.15 E-value=29 Score=37.66 Aligned_cols=61 Identities=10% Similarity=0.016 Sum_probs=43.2
Q ss_pred ccccccccccccCceeE-EEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEEecCCC
Q 015475 100 EYHCPVLNKVFTEFTHI-VAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQNPN 162 (406)
Q Consensus 100 ~~~CPvt~k~f~~~t~~-v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~Lqdp~ 162 (406)
.-.|+||..++..-.++ .-.-+|||+|...|+.+--.- .-.||.|-..+-...++-...+.
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er--~qtCP~CR~~~~~~~~~~~~~~~ 352 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER--QQTCPTCRTVLYDYVLWQIAALQ 352 (543)
T ss_pred CCeeeeechhhccccccccceeecccchHHHHHHHHHHH--hCcCCcchhhhhccccccccCCc
Confidence 44799999999774433 334589999999999987542 33799999866655555444443
No 169
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=30.91 E-value=92 Score=27.05 Aligned_cols=51 Identities=24% Similarity=0.313 Sum_probs=29.4
Q ss_pred cccccccccccCceeEEEEccCC-----eeehHHHHHHHhhccCCccccCCCCCCCCCCeE
Q 015475 101 YHCPVLNKVFTEFTHIVAVKTTG-----NVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 156 (406)
Q Consensus 101 ~~CPvt~k~f~~~t~~v~i~~cG-----~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII 156 (406)
..||||...=.+. |++|..+ +.|..+|+.+|.. .+..-|++-+||+.+=||
T Consensus 41 L~CPITL~iPe~G---VFvkNs~~S~VC~LyD~~Al~~Lv~--~~~~HPLSREpit~sMIv 96 (113)
T PF06416_consen 41 LTCPITLCIPENG---VFVKNSSGSDVCSLYDKEALSRLVR--EGAPHPLSREPITPSMIV 96 (113)
T ss_dssp H-BTTTTC--SCE---EEEECTTTSSEEEEEEHHHHHHHHH--CT---TTT-----TTTEE
T ss_pred cCCCeEEeecCCc---eEEecCCCCccceecCHHHHHHHHH--cCCCCCCccCCCChhhEe
Confidence 5699997665432 6666644 5799999999986 455789999999976555
No 170
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=28.85 E-value=35 Score=26.69 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=19.3
Q ss_pred cccCCCCC-CCC--CCeEEecCCCCcc
Q 015475 142 KELLTDEP-FTK--EDLITIQNPNALD 165 (406)
Q Consensus 142 ~c~vc~~~-f~~--~DII~Lqdp~~~~ 165 (406)
.||+|+-+ |++ ..+|+|.||++.+
T Consensus 20 ~CP~Cgs~~~te~W~G~~iIidpe~Se 46 (64)
T COG2093 20 ICPVCGSTDLTEEWFGLLIIIDPEKSE 46 (64)
T ss_pred cCCCCCCcccchhhccEEEEEcCcHHH
Confidence 59999976 775 5788999998754
No 171
>smart00280 KAZAL Kazal type serine protease inhibitors. Kazal type serine protease inhibitors and follistatin-like domains.
Probab=28.08 E-value=57 Score=22.95 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=20.4
Q ss_pred CCCCeecCCCCEeeHhhHHHHHHh
Q 015475 49 FEDPVCTADGSVFELMSITPYIRK 72 (406)
Q Consensus 49 l~~PV~t~~G~lf~ke~Il~~Ll~ 72 (406)
-.+|||..+|..|.=++.|....-
T Consensus 9 ~~~pVCgsdg~TY~N~C~l~~~~c 32 (46)
T smart00280 9 EYDPVCGSDGVTYSNECHLCKAAC 32 (46)
T ss_pred CCCccCCCCCCEeCCHhHHHHHHh
Confidence 458999999999999999977653
No 172
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=27.80 E-value=20 Score=36.54 Aligned_cols=45 Identities=18% Similarity=0.139 Sum_probs=37.1
Q ss_pred CCCCccccCCCCCCCCCeec-CCCCEeeHhhHHHHHHhcCCCCCCC
Q 015475 36 RLPFYCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKYGKHPVTG 80 (406)
Q Consensus 36 ~lpf~~C~LSl~Pl~~PV~t-~~G~lf~ke~Il~~Ll~~~~~Pvtg 80 (406)
.-|.-.|.||..=|.|+--. .-=|.|||.||+.||.....||..+
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~ 57 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCD 57 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 34677899999999988554 6679999999999999988888753
No 173
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=27.31 E-value=27 Score=20.22 Aligned_cols=12 Identities=33% Similarity=1.016 Sum_probs=5.5
Q ss_pred cccccccccccC
Q 015475 101 YHCPVLNKVFTE 112 (406)
Q Consensus 101 ~~CPvt~k~f~~ 112 (406)
|.||++++.|..
T Consensus 1 ~~C~~C~~~~~~ 12 (24)
T PF13894_consen 1 FQCPICGKSFRS 12 (24)
T ss_dssp EE-SSTS-EESS
T ss_pred CCCcCCCCcCCc
Confidence 456666655544
No 174
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=26.68 E-value=36 Score=36.21 Aligned_cols=42 Identities=12% Similarity=0.089 Sum_probs=30.8
Q ss_pred ccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCC
Q 015475 102 HCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTD 147 (406)
Q Consensus 102 ~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~ 147 (406)
.||||...+-..+.-+.-..|-|-|-..|+.+- .+..||||-
T Consensus 177 TCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w----~~~scpvcR 218 (493)
T KOG0804|consen 177 TCPVCLERMDSSTTGILTILCNHSFHCSCLMKW----WDSSCPVCR 218 (493)
T ss_pred CcchhHhhcCccccceeeeecccccchHHHhhc----ccCcChhhh
Confidence 599999999887766666689999888887654 234455553
No 175
>PF07648 Kazal_2: Kazal-type serine protease inhibitor domain; InterPro: IPR011497 This domain is usually indicative of serine protease inhibitors that belong to Merops inhibitor families: I1, I2, I17 and I31. However, kazal-like domains are also seen in the extracellular part of agrins, which are not known to be protease inhibitors. Kazal domains often occur in tandem arrays and have a central alpha-helix, a short two-stranded antiparallel beta-sheet and several disulphide bonds [, , ]. The amino terminal segment of this domain binds to the active site of its target proteases, thus inhibiting their function.; PDB: 2KMP_A 1LDT_L 2KMR_A 2KMO_A 2KMQ_A 1AN1_I 4E0S_B 3T5O_A 4A5W_B 1LR7_A ....
Probab=25.36 E-value=47 Score=22.42 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=18.3
Q ss_pred CCeecCCCCEeeHhhHHHHHH
Q 015475 51 DPVCTADGSVFELMSITPYIR 71 (406)
Q Consensus 51 ~PV~t~~G~lf~ke~Il~~Ll 71 (406)
+|||..+|..|.=++.+....
T Consensus 7 ~PVCg~dg~ty~n~C~l~~~~ 27 (42)
T PF07648_consen 7 SPVCGSDGKTYSNECELRCAN 27 (42)
T ss_dssp STEEETTSEEESSHHHHHHHH
T ss_pred CCEEcCCCCEEhhHHHHHHHH
Confidence 499999999999999887754
No 176
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=25.16 E-value=29 Score=20.49 Aligned_cols=12 Identities=42% Similarity=1.121 Sum_probs=7.0
Q ss_pred cccccccccccC
Q 015475 101 YHCPVLNKVFTE 112 (406)
Q Consensus 101 ~~CPvt~k~f~~ 112 (406)
|.||.+++.|..
T Consensus 1 y~C~~C~~~f~~ 12 (23)
T PF00096_consen 1 YKCPICGKSFSS 12 (23)
T ss_dssp EEETTTTEEESS
T ss_pred CCCCCCCCccCC
Confidence 456666666654
No 177
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.81 E-value=47 Score=34.27 Aligned_cols=39 Identities=18% Similarity=0.115 Sum_probs=23.6
Q ss_pred ccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCC
Q 015475 102 HCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEP 149 (406)
Q Consensus 102 ~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~ 149 (406)
.|=||..++-+ ++++ |||||-|-...-+.+ -.||+|-..
T Consensus 307 lcVVcl~e~~~---~~fv-pcGh~ccct~cs~~l-----~~CPvCR~r 345 (355)
T KOG1571|consen 307 LCVVCLDEPKS---AVFV-PCGHVCCCTLCSKHL-----PQCPVCRQR 345 (355)
T ss_pred ceEEecCCccc---eeee-cCCcEEEchHHHhhC-----CCCchhHHH
Confidence 45555555543 3444 999998844444443 259999643
No 178
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.27 E-value=48 Score=34.84 Aligned_cols=49 Identities=18% Similarity=0.384 Sum_probs=38.6
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCC
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~ 152 (406)
..+|.|-||...|-.- |. -+|||-+|..||.+.. .....||.|..+|.+
T Consensus 82 ~sef~c~vc~~~l~~p---v~-tpcghs~c~~Cl~r~l--d~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP---VV-TPCGHSFCLECLDRSL--DQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCC---cc-ccccccccHHHHHHHh--ccCCCCccccccccc
Confidence 4679999998877552 22 3999999999988854 356789999998875
No 179
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=24.20 E-value=65 Score=32.55 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=34.9
Q ss_pred cccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCC
Q 015475 101 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 151 (406)
Q Consensus 101 ~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~ 151 (406)
+-||||+..+... ++=...||..|-.|-.++. .+||.|..+++
T Consensus 49 leCPvC~~~l~~P---i~QC~nGHlaCssC~~~~~-----~~CP~Cr~~~g 91 (299)
T KOG3002|consen 49 LDCPVCFNPLSPP---IFQCDNGHLACSSCRTKVS-----NKCPTCRLPIG 91 (299)
T ss_pred ccCchhhccCccc---ceecCCCcEehhhhhhhhc-----ccCCccccccc
Confidence 4599999998764 4456789999999997664 38999999998
No 180
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=24.17 E-value=72 Score=33.33 Aligned_cols=44 Identities=14% Similarity=0.386 Sum_probs=32.8
Q ss_pred ccccCCCCCCCCCe-------------ecCCCCEeeHhhHHHHHHhcCCCCCCCCCC
Q 015475 40 YCCALTFTPFEDPV-------------CTADGSVFELMSITPYIRKYGKHPVTGTPL 83 (406)
Q Consensus 40 ~~C~LSl~Pl~~PV-------------~t~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l 83 (406)
+.|.||..-+-+|= =-+.||++-.+|+-.|+..+.+||+.+.|+
T Consensus 288 ~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 288 RTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred CeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 46888876633321 125699999999999999988888876653
No 181
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=23.77 E-value=39 Score=34.57 Aligned_cols=60 Identities=13% Similarity=0.177 Sum_probs=34.2
Q ss_pred CccccccccccccC---ceeEEE-EccCCeeehHHHHHHHhhcc-----CCccccCCCCCCCCCCeEEe
Q 015475 99 GEYHCPVLNKVFTE---FTHIVA-VKTTGNVFCFEAIKELNIKT-----KNWKELLTDEPFTKEDLITI 158 (406)
Q Consensus 99 ~~~~CPvt~k~f~~---~t~~v~-i~~cG~V~s~~ai~~l~~~~-----k~~~c~vc~~~f~~~DII~L 158 (406)
...+|-+|...-+. .+.+.+ +--.-+|...+|+.++.... ..|.||.|+.+=.....|.|
T Consensus 234 srlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~K~~~I 302 (415)
T COG5533 234 SRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRKESSRKRMEI 302 (415)
T ss_pred hhhhhhhcCCceeEEeccceeeeccchheeecHHHHHHHhhhHHhhcCcccccCchhcccccchheEEE
Confidence 45567666554333 332221 11133444889998886432 36999999976654444443
No 182
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=23.57 E-value=55 Score=22.12 Aligned_cols=9 Identities=22% Similarity=0.136 Sum_probs=7.0
Q ss_pred ccccCCCCC
Q 015475 141 WKELLTDEP 149 (406)
Q Consensus 141 ~~c~vc~~~ 149 (406)
..||+|+.+
T Consensus 19 ~~CP~Cg~~ 27 (34)
T cd00729 19 EKCPICGAP 27 (34)
T ss_pred CcCcCCCCc
Confidence 489999864
No 183
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=23.00 E-value=26 Score=34.43 Aligned_cols=48 Identities=10% Similarity=0.110 Sum_probs=36.1
Q ss_pred ccccccc--cccCceeEEEEccCCeeehHHHHHHHhhccCCcccc--CCCCCC
Q 015475 102 HCPVLNK--VFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKEL--LTDEPF 150 (406)
Q Consensus 102 ~CPvt~k--~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~--vc~~~f 150 (406)
.||||.- -++.+.+|...--|=|-+|+.|++++- ......|| -||+-+
T Consensus 12 ~CPvCksDrYLnPdik~linPECyHrmCESCvdRIF-s~GpAqCP~~gC~kIL 63 (314)
T COG5220 12 RCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIF-SRGPAQCPYKGCGKIL 63 (314)
T ss_pred cCCccccccccCCCeEEEECHHHHHHHHHHHHHHHh-cCCCCCCCCccHHHHH
Confidence 7999865 466666665443399999999999984 45678999 888643
No 184
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=23.00 E-value=46 Score=20.79 Aligned_cols=12 Identities=25% Similarity=0.703 Sum_probs=8.5
Q ss_pred cccccccccccC
Q 015475 101 YHCPVLNKVFTE 112 (406)
Q Consensus 101 ~~CPvt~k~f~~ 112 (406)
|.|++|.+.|++
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T PF12171_consen 2 FYCDACDKYFSS 13 (27)
T ss_dssp CBBTTTTBBBSS
T ss_pred CCcccCCCCcCC
Confidence 667777777765
No 185
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=22.39 E-value=83 Score=26.02 Aligned_cols=51 Identities=10% Similarity=0.105 Sum_probs=35.8
Q ss_pred ccccccccccC----------ceeEEEEccCCeeehHHHHHHHhhcc-CCccccCCCCCCCCC
Q 015475 102 HCPVLNKVFTE----------FTHIVAVKTTGNVFCFEAIKELNIKT-KNWKELLTDEPFTKE 153 (406)
Q Consensus 102 ~CPvt~k~f~~----------~t~~v~i~~cG~V~s~~ai~~l~~~~-k~~~c~vc~~~f~~~ 153 (406)
.|+|++..|.+ .-. +++-.|||.|-.-||.+-.... ..-.||.|-.+|..+
T Consensus 23 ~CgICr~~fdg~Cp~Ck~Pgd~Cp-lv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k 84 (85)
T PF12861_consen 23 VCGICRMPFDGCCPDCKFPGDDCP-LVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFK 84 (85)
T ss_pred ceeeEecccccCCCCccCCCCCCc-eeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeeeC
Confidence 46666666643 223 3467899999999999876532 346899999988643
No 186
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=21.41 E-value=80 Score=23.17 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=13.3
Q ss_pred CCeecCCCCEeeHhhHHHHHHhc
Q 015475 51 DPVCTADGSVFELMSITPYIRKY 73 (406)
Q Consensus 51 ~PV~t~~G~lf~ke~Il~~Ll~~ 73 (406)
=|+|.. | |+...++.++...
T Consensus 5 CP~C~~-~--~~~~~L~~H~~~~ 24 (54)
T PF05605_consen 5 CPYCGK-G--FSESSLVEHCEDE 24 (54)
T ss_pred CCCCCC-c--cCHHHHHHHHHhH
Confidence 355655 4 7777888887754
No 188
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=21.34 E-value=65 Score=23.81 Aligned_cols=48 Identities=15% Similarity=0.197 Sum_probs=22.1
Q ss_pred cccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCC
Q 015475 103 CPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 151 (406)
Q Consensus 103 CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~ 151 (406)
||++...+...-.-+.--+||.-++..++.++.. ..+.+||-|-++|+
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~-~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILE-NEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTT-SS-SB-TTT--B--
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHh-ccCCCCCCCCCCCC
Confidence 5666666633222234457999999999999864 34679999999874
No 189
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=21.34 E-value=68 Score=26.08 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=25.7
Q ss_pred CCCCCCccccCCCCCCCCCeec--CCCCEeeHhhH
Q 015475 34 FKRLPFYCCALTFTPFEDPVCT--ADGSVFELMSI 66 (406)
Q Consensus 34 ~~~lpf~~C~LSl~Pl~~PV~t--~~G~lf~ke~I 66 (406)
...-+-..|++|.+||..+++. +.|++|=..|+
T Consensus 73 v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~ 107 (109)
T PF10367_consen 73 VVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCI 107 (109)
T ss_pred EEECCCCCccCcCCcCCCceEEEeCCCeEEecccc
Confidence 4445577899999999987665 99999976654
No 190
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=21.20 E-value=44 Score=35.33 Aligned_cols=65 Identities=22% Similarity=0.381 Sum_probs=0.0
Q ss_pred HHHHHhcCCCCCCCCCCCCCCccc-----cccccCCCCccccccccccccC--------ceeEEEEccCCeeehHHHHHH
Q 015475 67 TPYIRKYGKHPVTGTPLKLEDLIP-----LTFHKNAEGEYHCPVLNKVFTE--------FTHIVAVKTTGNVFCFEAIKE 133 (406)
Q Consensus 67 l~~Ll~~~~~Pvtg~~l~lkDLi~-----l~f~~n~~~~~~CPvt~k~f~~--------~t~~v~i~~cG~V~s~~ai~~ 133 (406)
+.+..+..+.||.|..+..-.+.. |--..|..|+|+|-+|+..|-+ -.+||-+
T Consensus 229 ~S~~de~t~spvlg~~ik~vEiteesr~~l~~i~n~iGdyiCqLCK~kYeD~F~LAQHrC~RIV~v-------------- 294 (500)
T KOG3993|consen 229 LSFEDEVTTSPVLGLKIKEVEITEESRAKLAGIPNVIGDYICQLCKEKYEDAFALAQHRCPRIVHV-------------- 294 (500)
T ss_pred cchhhhhccCccccceeeeecccchhhhhhccCcccHHHHHHHHHHHhhhhHHHHhhccCCeeEEe--------------
Q ss_pred HhhccCCccccCCCCCCC
Q 015475 134 LNIKTKNWKELLTDEPFT 151 (406)
Q Consensus 134 l~~~~k~~~c~vc~~~f~ 151 (406)
.++|+.||+.|.
T Consensus 295 ------EYrCPEC~KVFs 306 (500)
T KOG3993|consen 295 ------EYRCPECDKVFS 306 (500)
T ss_pred ------eecCCccccccc
No 191
>PRK00420 hypothetical protein; Validated
Probab=20.83 E-value=1e+02 Score=26.71 Aligned_cols=9 Identities=44% Similarity=0.944 Sum_probs=4.6
Q ss_pred ccccccccc
Q 015475 102 HCPVLNKVF 110 (406)
Q Consensus 102 ~CPvt~k~f 110 (406)
+||+|+-.|
T Consensus 25 ~CP~Cg~pL 33 (112)
T PRK00420 25 HCPVCGLPL 33 (112)
T ss_pred CCCCCCCcc
Confidence 455555444
No 192
>KOG2649 consensus Zinc carboxypeptidase [General function prediction only]
Probab=20.58 E-value=87 Score=33.72 Aligned_cols=51 Identities=25% Similarity=0.456 Sum_probs=36.7
Q ss_pred ccEEEEEecceeEEEEEcCCCChhHHH----------HHHHHHhcCccCCceeeeecCCeeEeecCCC
Q 015475 348 KGYVQLHTTHGDLNIELHCDITPRSCE----------NFITLCERGYYNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 348 ~~~v~l~T~~G~i~ieL~~d~aP~t~~----------NF~~L~~~g~Ydgt~FhRvi~~f~iq~gGDP 405 (406)
...-.|+|+.=.|+|||-|+.-|..-+ ..+.+.+ .+||-|+|+|.-.-|-|
T Consensus 331 qDfnYLhTNCfEiTiElgC~KfP~e~eLp~~WE~Nr~sLl~f~e-------qvH~GIkG~V~D~~G~~ 391 (500)
T KOG2649|consen 331 QDWNYLHTNCFEITLELSCEKFPKESELPTLWEYNRKSLLNFVE-------QVHRGIKGLVFDDTGNP 391 (500)
T ss_pred cchhhhhcCeEEEEEEeccccCCchhhhHHHHHhhHHHHHHHHH-------HHHhccceeEEcCCCCc
Confidence 444578899999999999999999876 2222222 35788888877666655
No 193
>cd01327 KAZAL_PSTI Kazal-type pancreatic secretory trypsin inhibitors (PSTI) and related proteins, including the second domain of the ovomucoid turkey inhibitor and the C-terminal domain of the esophagus cancer-related gene-2 protein (ECRG-2), are members of the superfamily of kazal-type proteinase inhibitors and follistatin-like proteins.
Probab=20.35 E-value=80 Score=22.55 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=17.4
Q ss_pred CCCeecCCCCEeeHhhHHHH
Q 015475 50 EDPVCTADGSVFELMSITPY 69 (406)
Q Consensus 50 ~~PV~t~~G~lf~ke~Il~~ 69 (406)
.+|||..+|..|.-++.|..
T Consensus 9 ~~PVCGsDg~TY~N~C~l~~ 28 (45)
T cd01327 9 YDPVCGTDGVTYSNECLLCA 28 (45)
T ss_pred CCceeCCCCCEeCCHhHHHH
Confidence 36999999999999999854
No 194
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=20.26 E-value=40 Score=32.11 Aligned_cols=17 Identities=12% Similarity=0.194 Sum_probs=13.6
Q ss_pred CCccccCCCCCCCCCCe
Q 015475 139 KNWKELLTDEPFTKEDL 155 (406)
Q Consensus 139 k~~~c~vc~~~f~~~DI 155 (406)
|...||||+..|+.+.|
T Consensus 4 k~~~CPvC~~~F~~~~v 20 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKV 20 (214)
T ss_pred CceECCCCCCeeeeeEE
Confidence 56789999999986544
Done!