Query 015475
Match_columns 406
No_of_seqs 336 out of 2257
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 13:16:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015475.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015475hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zkc_A Peptidyl-prolyl CIS-tra 99.7 1.3E-18 4.4E-23 161.6 8.2 62 343-405 14-75 (197)
2 1v9t_A Cyclophilin B; beta bar 99.7 1.8E-18 6.3E-23 156.5 8.1 59 346-405 2-60 (166)
3 3s6m_A Peptidyl-prolyl CIS-tra 99.7 1.7E-18 5.9E-23 156.7 6.6 57 348-405 3-59 (167)
4 3bo7_A Peptidyl-prolyl CIS-tra 99.7 4E-18 1.4E-22 158.8 8.0 58 345-403 3-60 (201)
5 2fu0_A Cyclophilin, putative; 99.7 3.8E-18 1.3E-22 153.7 7.5 57 348-405 5-61 (160)
6 1lop_A Cyclophilin A; rotamase 99.7 3E-18 1E-22 154.8 6.4 55 350-405 1-55 (164)
7 2hq6_A Serologically defined c 99.7 5E-18 1.7E-22 156.3 8.0 60 345-405 21-80 (185)
8 3bkp_A Cyclophilin; malaria, i 99.7 5.3E-18 1.8E-22 161.2 8.4 61 345-406 18-78 (232)
9 2x7k_A Peptidyl-prolyl CIS-tra 99.7 4.3E-18 1.5E-22 154.1 7.2 58 347-405 10-67 (166)
10 2ok3_A Peptidyl-prolyl CIS-tra 99.7 5.9E-18 2E-22 152.5 7.4 57 349-406 1-57 (161)
11 2a2n_A Peptidylprolyl isomeras 99.7 8E-18 2.8E-22 153.7 7.8 59 346-405 19-77 (176)
12 2poe_A Cyclophilin-like protei 99.7 6.4E-18 2.2E-22 155.5 7.1 61 344-405 12-72 (185)
13 2b71_A Cyclophilin-like protei 99.7 1.2E-17 4.2E-22 155.0 6.8 58 347-405 37-94 (196)
14 2k7n_A Peptidyl-prolyl CIS-tra 99.7 1.4E-17 4.9E-22 155.2 6.7 58 347-405 10-67 (203)
15 1w74_A Peptidyl-prolyl CIS-tra 99.7 2.9E-17 9.8E-22 151.9 7.7 59 346-405 21-94 (191)
16 2cmt_A Peptidyl-prolyl CIS-tra 99.6 4.8E-16 1.6E-20 141.5 7.9 57 348-405 10-74 (172)
17 2r99_A Peptidyl-prolyl CIS-tra 99.6 6E-16 2.1E-20 140.9 7.8 50 355-405 23-75 (173)
18 2z6w_A Peptidyl-prolyl CIS-tra 99.6 9.9E-16 3.4E-20 138.5 7.8 50 355-405 15-67 (165)
19 1mzw_A Cyclophilin H, U-snRNP- 99.6 1.4E-15 4.7E-20 139.1 7.7 57 348-405 10-79 (177)
20 2haq_A Cyclophilin; rotamase, 99.6 1.5E-15 5.1E-20 138.2 7.8 51 354-405 22-75 (172)
21 2wfi_A Peptidyl-prolyl CIS-tra 99.6 1.9E-15 6.4E-20 138.4 8.0 50 355-405 21-81 (179)
22 1qng_A Peptidyl-prolyl CIS-tra 99.6 1.8E-15 6.3E-20 137.4 7.2 56 349-405 4-73 (170)
23 2c3b_A Ppiase, cyclophilin; is 99.6 1.2E-15 4.3E-20 138.7 5.8 51 353-404 17-70 (172)
24 3pmp_A Cyclophilin A; peptidyl 99.6 1.8E-15 6.3E-20 136.5 6.7 50 355-405 14-66 (164)
25 2igv_A Peptidyl-prolyl CIS-tra 99.6 2.6E-15 8.9E-20 136.7 7.5 55 350-405 5-74 (173)
26 3ich_A Peptidyl-prolyl CIS-tra 99.6 2.1E-15 7.2E-20 139.1 6.8 49 355-404 27-78 (188)
27 2he9_A NK-tumor recognition pr 99.6 2.3E-15 8E-20 139.2 6.5 51 354-405 30-91 (192)
28 2poy_A Peptidyl-prolyl CIS-tra 99.6 3.5E-15 1.2E-19 137.4 7.5 57 348-405 19-90 (186)
29 1z81_A Cyclophilin; structural 99.6 3.4E-15 1.1E-19 141.5 7.5 57 348-405 59-128 (229)
30 1a58_A Cyclophilin; isomerase, 99.6 3E-15 1E-19 136.8 6.5 50 355-405 18-78 (177)
31 3k2c_A Peptidyl-prolyl CIS-tra 99.6 4.2E-15 1.4E-19 137.6 7.5 50 355-405 39-91 (193)
32 3rdd_A Peptidyl-prolyl CIS-tra 99.6 4.3E-15 1.5E-19 136.6 7.5 58 347-405 21-86 (184)
33 3rfy_A Peptidyl-prolyl CIS-tra 99.5 2.4E-15 8.3E-20 151.1 6.0 58 346-405 168-233 (369)
34 4fru_A Cyclophilin B, peptidyl 99.5 3.3E-15 1.1E-19 137.4 6.3 50 355-405 24-76 (185)
35 2ose_A Probable peptidyl-proly 99.5 4.6E-15 1.6E-19 141.1 6.6 50 355-405 26-95 (234)
36 1ihg_A Cyclophilin 40; ppiase 99.5 6.1E-15 2.1E-19 147.2 7.8 58 348-406 15-88 (370)
37 2bay_A PRE-mRNA splicing facto 99.5 2.4E-14 8.1E-19 108.9 4.5 56 40-95 4-60 (61)
38 4ap4_A E3 ubiquitin ligase RNF 99.2 5.6E-12 1.9E-16 107.1 6.0 115 39-158 7-131 (133)
39 2kr4_A Ubiquitin conjugation f 99.0 2E-10 6.8E-15 92.4 5.4 63 35-97 9-72 (85)
40 1wgm_A Ubiquitin conjugation f 99.0 2.1E-10 7.3E-15 94.8 5.6 66 33-98 15-82 (98)
41 2kre_A Ubiquitin conjugation f 99.0 3.8E-10 1.3E-14 93.6 4.6 62 36-97 26-87 (100)
42 2f42_A STIP1 homology and U-bo 98.9 1.2E-09 4E-14 100.0 4.7 65 34-98 101-166 (179)
43 2yu4_A E3 SUMO-protein ligase 98.7 5.6E-09 1.9E-13 85.3 3.7 59 38-96 6-74 (94)
44 2c2l_A CHIP, carboxy terminus 98.6 2E-08 6.9E-13 95.2 4.8 64 34-97 203-267 (281)
45 1t1h_A Gspef-atpub14, armadill 98.4 2.6E-07 8.9E-12 71.9 5.3 62 35-96 4-66 (78)
46 2bay_A PRE-mRNA splicing facto 98.3 5.5E-07 1.9E-11 68.1 4.1 56 100-160 3-58 (61)
47 1g25_A CDK-activating kinase a 98.1 2.4E-06 8.2E-11 64.2 4.9 59 99-158 2-61 (65)
48 3m62_A Ubiquitin conjugation f 98.1 9.1E-07 3.1E-11 98.0 1.9 68 34-101 886-954 (968)
49 3htk_C E3 SUMO-protein ligase 97.9 2.5E-06 8.7E-11 82.0 0.9 58 36-93 178-240 (267)
50 2kre_A Ubiquitin conjugation f 97.9 2E-05 6.8E-10 65.0 6.0 54 98-157 27-80 (100)
51 2kr4_A Ubiquitin conjugation f 97.8 1.6E-05 5.5E-10 63.5 4.9 54 98-157 12-65 (85)
52 1wgm_A Ubiquitin conjugation f 97.8 2.7E-05 9.3E-10 64.0 5.8 54 98-157 20-74 (98)
53 2xeu_A Ring finger protein 4; 97.8 2.1E-05 7E-10 58.1 4.3 58 99-158 2-62 (64)
54 2ct2_A Tripartite motif protei 97.7 2.2E-05 7.6E-10 61.8 4.2 59 98-156 13-72 (88)
55 2ecw_A Tripartite motif-contai 97.7 0.00013 4.4E-09 56.6 7.7 60 36-95 16-81 (85)
56 2djb_A Polycomb group ring fin 97.7 0.00013 4.4E-09 55.8 7.5 56 36-91 12-68 (72)
57 3ng2_A RNF4, snurf, ring finge 97.7 2.4E-05 8.3E-10 59.2 3.2 59 98-158 8-69 (71)
58 1t1h_A Gspef-atpub14, armadill 97.7 7.3E-05 2.5E-09 57.8 6.0 55 98-157 6-60 (78)
59 2ecv_A Tripartite motif-contai 97.6 0.00013 4.4E-09 56.6 7.3 61 35-95 15-81 (85)
60 3lrq_A E3 ubiquitin-protein li 97.6 5.8E-05 2E-09 61.7 5.0 56 39-94 22-79 (100)
61 2f42_A STIP1 homology and U-bo 97.6 5.6E-05 1.9E-09 68.9 5.2 55 98-157 104-158 (179)
62 2djb_A Polycomb group ring fin 97.6 6.8E-05 2.3E-09 57.3 4.9 55 98-157 13-67 (72)
63 2ysl_A Tripartite motif-contai 97.6 0.00016 5.6E-09 54.9 6.9 54 98-155 18-72 (73)
64 3ng2_A RNF4, snurf, ring finge 97.6 6E-05 2.1E-09 56.9 4.4 56 38-93 9-71 (71)
65 2ecw_A Tripartite motif-contai 97.6 0.00012 4.1E-09 56.8 6.2 58 98-159 17-78 (85)
66 2yu4_A E3 SUMO-protein ligase 97.6 7.7E-05 2.6E-09 60.5 5.3 57 98-157 5-68 (94)
67 2xeu_A Ring finger protein 4; 97.6 4.2E-05 1.4E-09 56.5 3.3 54 40-93 4-64 (64)
68 3htk_C E3 SUMO-protein ligase 97.5 0.00012 4E-09 70.5 6.7 92 59-157 142-237 (267)
69 3ztg_A E3 ubiquitin-protein li 97.5 9.7E-05 3.3E-09 58.9 5.3 49 35-83 9-60 (92)
70 3hct_A TNF receptor-associated 97.5 5.6E-05 1.9E-09 63.5 3.9 69 36-104 15-86 (118)
71 2ecy_A TNF receptor-associated 97.5 0.00011 3.9E-09 55.0 4.8 53 98-155 13-65 (66)
72 2c2l_A CHIP, carboxy terminus 97.5 7.2E-05 2.5E-09 70.6 4.3 55 98-157 206-260 (281)
73 2csy_A Zinc finger protein 183 97.4 0.00032 1.1E-08 54.6 7.2 47 38-84 14-60 (81)
74 1jm7_A BRCA1, breast cancer ty 97.4 0.00013 4.3E-09 60.1 4.5 55 39-93 21-78 (112)
75 2ecy_A TNF receptor-associated 97.4 0.00013 4.3E-09 54.8 4.0 53 36-88 12-65 (66)
76 2ect_A Ring finger protein 126 97.4 9.6E-05 3.3E-09 57.1 3.4 58 98-158 13-70 (78)
77 2yur_A Retinoblastoma-binding 97.4 0.00045 1.5E-08 53.1 7.1 52 36-87 12-66 (74)
78 2yur_A Retinoblastoma-binding 97.4 0.00012 4.2E-09 56.3 3.8 56 98-156 13-68 (74)
79 2y43_A E3 ubiquitin-protein li 97.4 9.9E-05 3.4E-09 59.8 3.4 54 39-92 22-76 (99)
80 3ztg_A E3 ubiquitin-protein li 97.4 0.00025 8.4E-09 56.5 5.6 51 98-152 11-62 (92)
81 1z6u_A NP95-like ring finger p 97.4 0.00016 5.5E-09 63.6 4.9 49 38-86 77-126 (150)
82 2ysl_A Tripartite motif-contai 97.3 0.0004 1.4E-08 52.7 6.2 53 36-88 17-72 (73)
83 3fl2_A E3 ubiquitin-protein li 97.3 0.0002 6.8E-09 60.4 4.9 47 39-85 52-99 (124)
84 2ct2_A Tripartite motif protei 97.3 0.00056 1.9E-08 53.6 6.8 57 35-91 11-74 (88)
85 2ecm_A Ring finger and CHY zin 97.2 0.00019 6.5E-09 51.5 3.4 51 99-151 4-54 (55)
86 2egp_A Tripartite motif-contai 97.2 8.2E-05 2.8E-09 57.3 1.4 60 36-95 9-75 (79)
87 2ckl_B Ubiquitin ligase protei 97.2 0.00032 1.1E-08 62.0 5.5 54 99-156 53-106 (165)
88 2d8t_A Dactylidin, ring finger 97.2 0.00011 3.6E-09 56.1 2.0 57 34-90 10-66 (71)
89 2ea6_A Ring finger protein 4; 97.2 0.00019 6.5E-09 53.6 3.3 53 98-152 13-68 (69)
90 2ecv_A Tripartite motif-contai 97.2 0.00022 7.4E-09 55.3 3.7 56 98-157 17-76 (85)
91 3hcs_A TNF receptor-associated 97.2 0.00022 7.5E-09 63.4 4.2 69 36-104 15-86 (170)
92 4ayc_A E3 ubiquitin-protein li 97.2 0.0002 6.9E-09 61.7 3.8 34 40-73 54-87 (138)
93 2y43_A E3 ubiquitin-protein li 97.2 0.00033 1.1E-08 56.7 4.9 53 99-156 21-73 (99)
94 1rmd_A RAG1; V(D)J recombinati 97.2 0.00035 1.2E-08 58.1 5.1 53 39-91 23-76 (116)
95 2d8t_A Dactylidin, ring finger 97.1 0.00021 7.1E-09 54.4 2.8 54 98-157 13-66 (71)
96 1jm7_A BRCA1, breast cancer ty 97.1 0.00018 6.3E-09 59.1 2.7 57 99-159 20-77 (112)
97 3lrq_A E3 ubiquitin-protein li 97.1 0.00042 1.4E-08 56.5 4.7 55 99-157 21-75 (100)
98 2ckl_B Ubiquitin ligase protei 97.1 0.00035 1.2E-08 61.8 4.5 35 38-72 53-88 (165)
99 1x4j_A Ring finger protein 38; 97.1 0.00074 2.5E-08 51.8 5.8 65 85-152 6-72 (75)
100 2csy_A Zinc finger protein 183 97.1 0.00072 2.5E-08 52.6 5.8 48 98-151 13-60 (81)
101 3hct_A TNF receptor-associated 97.1 0.00063 2.2E-08 56.9 5.7 60 93-157 11-70 (118)
102 4ap4_A E3 ubiquitin ligase RNF 97.1 0.00037 1.3E-08 58.4 4.2 60 98-159 5-67 (133)
103 2egp_A Tripartite motif-contai 97.0 0.0002 6.7E-09 55.2 1.7 55 98-156 10-69 (79)
104 2ckl_A Polycomb group ring fin 97.0 0.00095 3.3E-08 54.8 5.7 51 98-153 13-63 (108)
105 2ea6_A Ring finger protein 4; 97.0 0.00083 2.8E-08 50.0 4.7 50 36-85 12-68 (69)
106 3fl2_A E3 ubiquitin-protein li 96.9 0.00093 3.2E-08 56.2 5.1 51 98-153 50-100 (124)
107 2ckl_A Polycomb group ring fin 96.9 0.00049 1.7E-08 56.6 3.3 45 38-82 14-59 (108)
108 1g25_A CDK-activating kinase a 96.9 0.00091 3.1E-08 49.8 4.1 55 40-94 4-64 (65)
109 2ep4_A Ring finger protein 24; 96.9 0.0016 5.3E-08 49.6 5.5 52 98-152 13-64 (74)
110 2ect_A Ring finger protein 126 96.8 0.002 6.8E-08 49.5 6.1 56 36-91 12-70 (78)
111 2ysj_A Tripartite motif-contai 96.8 0.0029 9.9E-08 46.6 6.6 37 36-72 17-53 (63)
112 2ysj_A Tripartite motif-contai 96.8 0.0016 5.4E-08 48.1 5.1 45 98-146 18-63 (63)
113 2ecn_A Ring finger protein 141 96.8 0.00038 1.3E-08 52.5 1.7 53 98-157 13-65 (70)
114 1z6u_A NP95-like ring finger p 96.8 0.0012 4.2E-08 57.9 5.2 51 99-154 77-127 (150)
115 1iym_A EL5; ring-H2 finger, ub 96.7 0.00085 2.9E-08 48.0 3.1 51 99-151 4-54 (55)
116 2kiz_A E3 ubiquitin-protein li 96.7 0.0019 6.4E-08 48.5 5.1 52 98-152 12-63 (69)
117 2l0b_A E3 ubiquitin-protein li 96.7 0.0022 7.6E-08 51.2 5.2 52 98-152 38-89 (91)
118 1rmd_A RAG1; V(D)J recombinati 96.6 0.00081 2.8E-08 55.9 2.7 54 98-156 21-74 (116)
119 4ayc_A E3 ubiquitin-protein li 96.6 0.0016 5.4E-08 56.0 4.6 47 100-152 53-99 (138)
120 1jm7_B BARD1, BRCA1-associated 96.5 0.00041 1.4E-08 58.0 0.1 51 99-156 21-71 (117)
121 3hcs_A TNF receptor-associated 96.5 0.0029 1E-07 56.0 5.6 62 91-157 9-70 (170)
122 1v87_A Deltex protein 2; ring- 96.5 0.0027 9.1E-08 52.4 4.8 62 100-163 25-103 (114)
123 1jm7_B BARD1, BRCA1-associated 96.5 0.00059 2E-08 57.0 0.8 48 39-88 22-70 (117)
124 2ecm_A Ring finger and CHY zin 96.5 0.0046 1.6E-07 44.0 5.4 45 39-83 5-53 (55)
125 1e4u_A Transcriptional repress 96.4 0.0013 4.3E-08 51.8 2.3 58 98-156 9-66 (78)
126 1chc_A Equine herpes virus-1 r 96.4 0.0037 1.3E-07 46.6 4.9 46 39-84 5-51 (68)
127 1chc_A Equine herpes virus-1 r 96.3 0.0041 1.4E-07 46.4 4.5 48 99-151 4-51 (68)
128 2y1n_A E3 ubiquitin-protein li 96.2 0.0025 8.4E-08 64.6 3.9 53 39-91 332-385 (389)
129 2ecj_A Tripartite motif-contai 96.2 0.0038 1.3E-07 44.9 3.7 36 36-71 12-47 (58)
130 2vje_B MDM4 protein; proto-onc 96.1 0.0068 2.3E-07 45.3 5.0 53 99-157 6-59 (63)
131 2y1n_A E3 ubiquitin-protein li 96.1 0.0036 1.2E-07 63.3 4.3 55 100-159 332-386 (389)
132 2vje_A E3 ubiquitin-protein li 96.1 0.0069 2.3E-07 45.4 4.7 54 99-158 7-61 (64)
133 2yho_A E3 ubiquitin-protein li 96.0 0.0042 1.4E-07 48.7 3.3 60 100-171 18-78 (79)
134 2kiz_A E3 ubiquitin-protein li 96.0 0.011 3.8E-07 44.1 5.5 48 37-84 12-62 (69)
135 2ecg_A Baculoviral IAP repeat- 95.9 0.0026 9E-08 49.0 1.9 45 99-153 24-69 (75)
136 3knv_A TNF receptor-associated 95.9 0.0021 7.3E-08 55.9 1.5 35 38-72 30-64 (141)
137 2ecj_A Tripartite motif-contai 95.9 0.0068 2.3E-07 43.5 3.8 45 98-146 13-58 (58)
138 1x4j_A Ring finger protein 38; 95.9 0.0072 2.5E-07 46.1 4.1 47 38-84 22-71 (75)
139 2ep4_A Ring finger protein 24; 95.9 0.0082 2.8E-07 45.5 4.3 47 37-83 13-62 (74)
140 1v87_A Deltex protein 2; ring- 95.8 0.0058 2E-07 50.3 3.4 34 39-72 25-76 (114)
141 3l11_A E3 ubiquitin-protein li 95.7 0.0035 1.2E-07 51.9 1.9 49 99-152 14-62 (115)
142 1iym_A EL5; ring-H2 finger, ub 95.7 0.0093 3.2E-07 42.4 3.8 46 39-84 5-54 (55)
143 2l0b_A E3 ubiquitin-protein li 95.7 0.0062 2.1E-07 48.6 3.1 47 38-84 39-88 (91)
144 2ecl_A Ring-box protein 2; RNF 95.5 0.007 2.4E-07 47.3 2.9 50 38-87 14-78 (81)
145 3l11_A E3 ubiquitin-protein li 95.4 0.0039 1.3E-07 51.6 1.0 49 38-112 14-62 (115)
146 1wim_A KIAA0161 protein; ring 95.4 0.007 2.4E-07 48.4 2.4 50 99-149 4-61 (94)
147 3knv_A TNF receptor-associated 95.3 0.0061 2.1E-07 52.9 2.2 52 97-153 28-79 (141)
148 2ecl_A Ring-box protein 2; RNF 95.3 0.0081 2.8E-07 47.0 2.7 51 102-154 17-78 (81)
149 2ea5_A Cell growth regulator w 95.2 0.012 4.1E-07 44.8 3.1 52 98-161 13-65 (68)
150 2ecn_A Ring finger protein 141 95.1 0.006 2E-07 45.8 1.2 49 37-86 13-61 (70)
151 4ic3_A E3 ubiquitin-protein li 94.9 0.0079 2.7E-07 46.2 1.5 44 99-152 23-67 (74)
152 3dpl_R Ring-box protein 1; ubi 94.9 0.019 6.5E-07 47.6 3.8 46 39-84 37-100 (106)
153 1bor_A Transcription factor PM 94.2 0.0078 2.7E-07 43.7 -0.2 46 98-152 4-49 (56)
154 3vk6_A E3 ubiquitin-protein li 94.1 0.049 1.7E-06 45.0 4.3 52 102-157 3-54 (101)
155 3i2d_A E3 SUMO-protein ligase 93.0 0.081 2.8E-06 53.1 4.7 54 101-157 250-305 (371)
156 4a0k_B E3 ubiquitin-protein li 92.8 0.016 5.6E-07 49.0 -0.4 46 40-85 49-112 (117)
157 1bor_A Transcription factor PM 92.7 0.049 1.7E-06 39.4 2.0 44 38-84 5-48 (56)
158 3t6p_A Baculoviral IAP repeat- 92.2 0.041 1.4E-06 54.7 1.4 44 99-152 294-338 (345)
159 1e4u_A Transcriptional repress 91.9 0.11 3.9E-06 40.4 3.4 52 38-89 10-66 (78)
160 4fo9_A E3 SUMO-protein ligase 91.7 0.15 5.3E-06 50.9 4.9 54 101-157 216-271 (360)
161 2vje_A E3 ubiquitin-protein li 91.2 0.22 7.5E-06 37.0 4.2 45 39-83 8-55 (64)
162 3dpl_R Ring-box protein 1; ubi 90.9 0.16 5.5E-06 41.9 3.5 50 100-151 37-100 (106)
163 2d8s_A Cellular modulator of i 90.5 0.42 1.4E-05 37.4 5.4 49 38-86 14-71 (80)
164 2vje_B MDM4 protein; proto-onc 90.0 0.26 8.7E-06 36.5 3.6 45 39-83 7-54 (63)
165 2d8s_A Cellular modulator of i 88.8 0.39 1.3E-05 37.6 4.0 55 98-154 13-72 (80)
166 4ic3_A E3 ubiquitin-protein li 88.7 0.17 5.9E-06 38.5 1.9 31 39-69 24-55 (74)
167 2ecg_A Baculoviral IAP repeat- 88.6 0.45 1.6E-05 36.1 4.2 29 39-67 25-54 (75)
168 3i2d_A E3 SUMO-protein ligase 86.9 0.42 1.4E-05 47.9 3.9 49 39-112 249-300 (371)
169 2kkx_A Uncharacterized protein 85.5 0.85 2.9E-05 37.5 4.3 54 37-90 25-84 (102)
170 4a0k_B E3 ubiquitin-protein li 83.9 0.21 7.1E-06 42.2 0.0 50 101-152 49-112 (117)
171 2ct0_A Non-SMC element 1 homol 83.1 1.3 4.3E-05 34.3 4.2 49 101-152 16-64 (74)
172 4fo9_A E3 SUMO-protein ligase 82.5 0.91 3.1E-05 45.3 4.0 48 39-111 215-265 (360)
173 1wim_A KIAA0161 protein; ring 82.4 0.89 3.1E-05 35.9 3.2 34 39-72 5-41 (94)
174 3m62_A Ubiquitin conjugation f 80.9 1.4 4.9E-05 49.1 5.2 54 98-157 889-943 (968)
175 3t6p_A Baculoviral IAP repeat- 80.7 0.57 1.9E-05 46.5 1.8 31 39-69 295-326 (345)
176 2ea5_A Cell growth regulator w 76.9 4.6 0.00016 30.1 5.5 43 36-82 12-55 (68)
177 1vd4_A Transcription initiatio 72.3 1.2 4E-05 32.0 1.0 42 98-154 12-53 (62)
178 4rxn_A Rubredoxin; electron tr 70.8 0.87 3E-05 33.3 0.0 19 138-158 34-52 (54)
179 2xjy_A Rhombotin-2; oncoprotei 70.4 4.7 0.00016 33.3 4.6 92 39-135 29-127 (131)
180 2jtn_A LIM domain-binding prot 69.0 13 0.00045 32.6 7.4 91 39-135 87-181 (182)
181 2yho_A E3 ubiquitin-protein li 68.8 2.1 7.2E-05 33.0 1.8 31 39-69 18-49 (79)
182 2nnz_A Hypothetical protein; b 67.5 4.9 0.00017 35.3 4.2 33 348-380 29-61 (153)
183 2rgt_A Fusion of LIM/homeobox 67.2 21 0.00072 30.8 8.3 92 39-136 33-128 (169)
184 1b8t_A Protein (CRP1); LIM dom 63.5 22 0.00076 31.4 7.9 102 38-149 33-184 (192)
185 3nw0_A Non-structural maintena 62.6 5.5 0.00019 37.2 3.8 58 100-161 180-237 (238)
186 6rxn_A Rubredoxin; electron tr 61.6 1.6 5.5E-05 30.8 -0.1 12 138-149 28-39 (46)
187 2k5c_A Uncharacterized protein 61.3 0.85 2.9E-05 36.2 -1.7 39 75-113 10-64 (95)
188 2v3b_B Rubredoxin 2, rubredoxi 59.3 1.7 5.9E-05 31.8 -0.3 18 138-157 34-51 (55)
189 1e8j_A Rubredoxin; iron-sulfur 58.9 1.8 6.2E-05 31.3 -0.2 12 138-149 34-45 (52)
190 2kn9_A Rubredoxin; metalloprot 57.9 1.7 5.7E-05 34.4 -0.6 19 138-158 58-76 (81)
191 2ctu_A Zinc finger protein 483 57.0 1.3 4.6E-05 31.6 -1.2 39 98-155 16-54 (73)
192 1yk4_A Rubredoxin, RD; electro 56.9 1.8 6.1E-05 31.3 -0.6 12 138-149 33-44 (52)
193 1s24_A Rubredoxin 2; electron 56.7 2.2 7.5E-05 34.2 -0.1 19 138-158 66-84 (87)
194 2ct0_A Non-SMC element 1 homol 55.6 18 0.0006 27.7 4.9 46 39-84 15-63 (74)
195 1dx8_A Rubredoxin; electron tr 55.2 2.2 7.6E-05 32.7 -0.3 19 138-158 38-56 (70)
196 1yuz_A Nigerythrin; rubrythrin 53.1 4.4 0.00015 37.0 1.3 10 140-149 186-195 (202)
197 4gzn_C ZFP-57, zinc finger pro 53.1 7.5 0.00026 28.1 2.3 43 99-153 3-45 (60)
198 2eps_A POZ-, at HOOK-, and zin 52.2 9.9 0.00034 25.8 2.8 44 98-152 10-53 (54)
199 1vyx_A ORF K3, K3RING; zinc-bi 49.8 13 0.00045 27.1 3.2 49 99-151 5-58 (60)
200 3uk3_C Zinc finger protein 217 49.3 11 0.00036 25.4 2.5 43 99-153 3-45 (57)
201 1bbo_A Human enhancer-binding 48.4 8.6 0.0003 25.9 2.0 42 100-153 1-42 (57)
202 2ctd_A Zinc finger protein 512 48.1 13 0.00044 29.0 3.2 43 98-153 32-75 (96)
203 2lv2_A Insulinoma-associated p 47.9 5 0.00017 31.2 0.7 44 99-154 27-70 (85)
204 2lce_A B-cell lymphoma 6 prote 47.6 9.9 0.00034 27.3 2.3 44 98-153 15-58 (74)
205 1rut_X Flinc4, fusion protein 47.3 4.9 0.00017 35.7 0.6 92 39-135 32-130 (188)
206 1f2i_G Fusion of N-terminal 17 43.7 18 0.00061 25.7 3.1 45 98-154 17-63 (73)
207 1x6e_A Zinc finger protein 24; 43.7 12 0.00042 26.8 2.2 44 98-153 12-55 (72)
208 3k1l_B Fancl; UBC, ring, RWD, 43.6 7.8 0.00027 38.7 1.4 45 40-84 309-372 (381)
209 2dlq_A GLI-kruppel family memb 42.8 17 0.00057 28.4 3.1 79 63-153 20-107 (124)
210 3kop_A Uncharacterized protein 41.8 25 0.00087 31.7 4.4 32 349-380 22-55 (188)
211 3mjh_B Early endosome antigen 40.8 7.7 0.00026 25.6 0.6 13 101-113 6-18 (34)
212 2adr_A ADR1; transcription reg 39.2 15 0.00051 25.0 2.0 42 100-153 2-43 (60)
213 2gqj_A Zinc finger protein KIA 37.3 16 0.00055 28.1 2.1 45 98-153 22-67 (98)
214 1x5w_A Zinc finger protein 64, 36.5 14 0.00047 26.2 1.5 44 98-153 7-50 (70)
215 2drp_A Protein (tramtrack DNA- 35.8 18 0.00062 25.1 2.1 45 98-153 8-53 (66)
216 2d9h_A Zinc finger protein 692 35.3 13 0.00045 26.9 1.2 47 98-153 5-51 (78)
217 2m0e_A Zinc finger and BTB dom 34.6 21 0.00072 19.7 1.9 14 140-153 2-15 (29)
218 1m3v_A FLIN4, fusion of the LI 34.3 28 0.00095 28.4 3.2 57 100-160 32-89 (122)
219 3pwf_A Rubrerythrin; non heme 33.4 16 0.00054 32.3 1.7 8 142-149 155-162 (170)
220 2ct1_A Transcriptional repress 33.3 14 0.00047 26.8 1.1 45 98-153 13-58 (77)
221 2khf_A PLNJ; anti-microbial, b 32.8 14 0.00047 22.4 0.8 16 374-389 4-19 (26)
222 2rgt_A Fusion of LIM/homeobox 32.2 73 0.0025 27.3 5.8 49 100-156 33-81 (169)
223 2ee8_A Protein ODD-skipped-rel 31.9 40 0.0014 25.5 3.7 16 98-113 15-30 (106)
224 1ard_A Yeast transcription fac 31.5 21 0.00072 19.8 1.5 13 140-152 2-14 (29)
225 2cot_A Zinc finger protein 435 31.2 25 0.00087 25.2 2.3 44 98-153 16-59 (77)
226 1p7a_A BF3, BKLF, kruppel-like 30.4 22 0.00076 21.4 1.6 14 139-152 10-23 (37)
227 2kkx_A Uncharacterized protein 29.9 84 0.0029 25.7 5.2 52 100-156 27-83 (102)
228 2lo3_A SAGA-associated factor 29.4 60 0.0021 22.5 3.6 28 46-73 8-39 (44)
229 1lko_A Rubrerythrin all-iron(I 29.2 16 0.00053 32.8 0.9 8 142-149 173-180 (191)
230 2yt9_A Zinc finger-containing 29.1 32 0.0011 25.5 2.6 14 99-112 6-19 (95)
231 2xqn_T Testin, TESS; metal-bin 28.6 85 0.0029 25.2 5.3 48 100-154 30-77 (126)
232 1m3v_A FLIN4, fusion of the LI 28.2 42 0.0014 27.3 3.3 50 40-89 33-85 (122)
233 2dmd_A Zinc finger protein 64, 28.2 25 0.00086 26.1 1.8 42 100-153 36-77 (96)
234 2kmk_A Zinc finger protein GFI 27.5 34 0.0012 24.4 2.4 13 139-151 56-68 (82)
235 1klr_A Zinc finger Y-chromosom 27.4 29 0.001 19.2 1.6 14 140-153 2-15 (30)
236 1llm_C Chimera of ZIF23-GCN4; 27.2 31 0.001 25.5 2.1 42 100-153 3-44 (88)
237 1vyx_A ORF K3, K3RING; zinc-bi 26.1 58 0.002 23.5 3.4 44 39-82 6-56 (60)
238 1paa_A Yeast transcription fac 26.0 31 0.0011 19.3 1.6 15 140-154 2-16 (30)
239 2lt7_A Transcriptional regulat 25.4 27 0.00091 29.0 1.6 19 96-114 18-36 (133)
240 2elr_A Zinc finger protein 406 25.1 31 0.0011 20.4 1.5 15 139-153 8-22 (36)
241 1a1h_A QGSR zinc finger peptid 25.0 36 0.0012 24.8 2.1 42 100-153 34-75 (90)
242 1h0z_A Serine protease inhibit 24.9 36 0.0012 25.9 2.1 24 47-70 27-50 (68)
243 1rim_A E6APC2 peptide; E6-bind 24.9 33 0.0011 20.4 1.6 14 140-153 2-15 (33)
244 2lvu_A Zinc finger and BTB dom 30.3 16 0.00054 20.1 0.0 13 101-113 3-15 (26)
245 2kvh_A Zinc finger and BTB dom 24.4 21 0.00073 19.8 0.6 14 139-152 2-15 (27)
246 1rik_A E6APC1 peptide; E6-bind 23.6 23 0.0008 19.7 0.7 14 140-153 2-15 (29)
247 3pis_D Kazal-type serine prote 23.5 43 0.0015 22.9 2.1 21 50-70 7-27 (42)
248 2kvf_A Zinc finger and BTB dom 23.3 24 0.00081 19.6 0.6 13 140-152 3-15 (28)
249 2wbt_A B-129; zinc finger; 2.7 22.9 64 0.0022 25.4 3.5 42 98-153 72-113 (129)
250 1wjp_A Zinc finger protein 295 22.8 64 0.0022 24.6 3.3 42 98-153 14-55 (107)
251 2epr_A POZ-, at HOOK-, and zin 21.7 31 0.0011 22.4 1.1 17 98-114 10-26 (48)
252 2lvt_A Zinc finger and BTB dom 26.3 21 0.00071 20.1 0.0 14 101-114 3-16 (29)
253 2xqn_T Testin, TESS; metal-bin 20.8 1.7E+02 0.0058 23.4 5.7 86 39-130 30-120 (126)
254 2elx_A Zinc finger protein 406 20.8 29 0.00098 20.4 0.7 14 139-152 6-19 (35)
255 2wbs_A Krueppel-like factor 4; 20.7 99 0.0034 22.2 3.9 16 138-153 63-78 (89)
256 2elp_A Zinc finger protein 406 20.0 31 0.0011 20.7 0.7 15 139-153 8-22 (37)
257 2kfq_A FP1; protein, de novo p 20.0 35 0.0012 20.0 0.9 14 140-153 2-15 (32)
No 1
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1
Probab=99.75 E-value=1.3e-18 Score=161.60 Aligned_cols=62 Identities=56% Similarity=1.092 Sum_probs=59.0
Q ss_pred cCCCCccEEEEEecceeEEEEEcCCCChhHHHHHHHHHhcCccCCceeeeecCCeeEeecCCC
Q 015475 343 KNPKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 343 ~~~k~~~~v~l~T~~G~i~ieL~~d~aP~t~~NF~~L~~~g~Ydgt~FhRvi~~f~iq~gGDP 405 (406)
+.|+..++|+|+|+.|+|+||||++.||+||+||+.||+.|||+|+.|||||++|||| ||||
T Consensus 14 ~~~~~~~~v~l~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Ydg~~FhRVi~~f~iQ-gGd~ 75 (197)
T 1zkc_A 14 LVPRGSGYVRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQ-GGDP 75 (197)
T ss_dssp CCCCSCEEEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEE-ECCT
T ss_pred CCCCCCcEEEEEeCCccEEEEEcCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCCEEE-cCCC
Confidence 4558899999999999999999999999999999999999999999999999999988 8887
No 2
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A
Probab=99.74 E-value=1.8e-18 Score=156.49 Aligned_cols=59 Identities=32% Similarity=0.487 Sum_probs=56.0
Q ss_pred CCccEEEEEecceeEEEEEcCCCChhHHHHHHHHHhcCccCCceeeeecCCeeEeecCCC
Q 015475 346 KKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 346 k~~~~v~l~T~~G~i~ieL~~d~aP~t~~NF~~L~~~g~Ydgt~FhRvi~~f~iq~gGDP 405 (406)
+....|.|+|+.|+|+||||++.||+||+||+.||+.|||+|+.|||||++|||| ||||
T Consensus 2 ~~~~~v~~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQ-gGd~ 60 (166)
T 1v9t_A 2 KGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQ-GGGF 60 (166)
T ss_dssp CCSCEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBEEEEETTTEEE-ESSB
T ss_pred CCCeEEEEEeCCccEEEEEcCCCCcHHHHHHHHHhccCCCCCCEEEEEECCcEEE-cCCc
Confidence 3567899999999999999999999999999999999999999999999999988 8887
No 3
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*
Probab=99.73 E-value=1.7e-18 Score=156.72 Aligned_cols=57 Identities=35% Similarity=0.594 Sum_probs=54.6
Q ss_pred ccEEEEEecceeEEEEEcCCCChhHHHHHHHHHhcCccCCceeeeecCCeeEeecCCC
Q 015475 348 KGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 348 ~~~v~l~T~~G~i~ieL~~d~aP~t~~NF~~L~~~g~Ydgt~FhRvi~~f~iq~gGDP 405 (406)
...|+|+|+.|+|+||||++.||+||+||+.||+.|||+|+.|||||++|||| ||||
T Consensus 3 ~~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQ-gGd~ 59 (167)
T 3s6m_A 3 GSMVELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQ-GGGF 59 (167)
T ss_dssp CCEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHHTTTTTEECCEEETTTEEE-ESSE
T ss_pred CcEEEEEeCCceEEEEEeCCCCcHHHHHHHHHhhhcccCCCEeEEecCCcEEE-eccc
Confidence 56899999999999999999999999999999999999999999999999988 8886
No 4
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Probab=99.73 E-value=4e-18 Score=158.80 Aligned_cols=58 Identities=48% Similarity=0.917 Sum_probs=54.6
Q ss_pred CCCccEEEEEecceeEEEEEcCCCChhHHHHHHHHHhcCccCCceeeeecCCeeEeecC
Q 015475 345 PKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRKRWRIYMG 403 (406)
Q Consensus 345 ~k~~~~v~l~T~~G~i~ieL~~d~aP~t~~NF~~L~~~g~Ydgt~FhRvi~~f~iq~gG 403 (406)
++.+++|+|+|+.|+|+||||++.||+||+||+.||+.|||+|+.|||||++|||| ||
T Consensus 3 ~~~~~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQ-gG 60 (201)
T 3bo7_A 3 LKKKGYLRIVTTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQ-GG 60 (201)
T ss_dssp --CCEEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBEEEEETTTEEE-EC
T ss_pred CCCceEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHhcCccCCCEEEEeeCCCEEE-cC
Confidence 36789999999999999999999999999999999999999999999999999988 77
No 5
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1
Probab=99.73 E-value=3.8e-18 Score=153.67 Aligned_cols=57 Identities=30% Similarity=0.467 Sum_probs=55.0
Q ss_pred ccEEEEEecceeEEEEEcCCCChhHHHHHHHHHhcCccCCceeeeecCCeeEeecCCC
Q 015475 348 KGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 348 ~~~v~l~T~~G~i~ieL~~d~aP~t~~NF~~L~~~g~Ydgt~FhRvi~~f~iq~gGDP 405 (406)
...|+|+|+.|+|+||||++.||+||+||+.||+.|||+|+.|||||++|||| ||||
T Consensus 5 ~~~v~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQ-gGd~ 61 (160)
T 2fu0_A 5 PKSAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQ-TGDP 61 (160)
T ss_dssp CCEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEE-ECCT
T ss_pred CCEEEEEecCccEEEEEeCCCChHHHHHHHHHhccCccCCCEEEEEECCCEEE-eCCc
Confidence 56899999999999999999999999999999999999999999999999988 8887
No 6
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A
Probab=99.72 E-value=3e-18 Score=154.81 Aligned_cols=55 Identities=36% Similarity=0.648 Sum_probs=52.9
Q ss_pred EEEEEecceeEEEEEcCCCChhHHHHHHHHHhcCccCCceeeeecCCeeEeecCCC
Q 015475 350 YVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 350 ~v~l~T~~G~i~ieL~~d~aP~t~~NF~~L~~~g~Ydgt~FhRvi~~f~iq~gGDP 405 (406)
.|+|+|+.|+|+||||++.||+||+||+.||+.|||+|+.|||||++|||| ||||
T Consensus 1 ~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQ-gGd~ 55 (164)
T 1lop_A 1 MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQ-GGGF 55 (164)
T ss_dssp CEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEECCEEETTTEEE-ESSE
T ss_pred CEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCceEe-cCCc
Confidence 389999999999999999999999999999999999999999999999988 8887
No 7
>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}
Probab=99.72 E-value=5e-18 Score=156.26 Aligned_cols=60 Identities=40% Similarity=0.737 Sum_probs=56.8
Q ss_pred CCCccEEEEEecceeEEEEEcCCCChhHHHHHHHHHhcCccCCceeeeecCCeeEeecCCC
Q 015475 345 PKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 345 ~k~~~~v~l~T~~G~i~ieL~~d~aP~t~~NF~~L~~~g~Ydgt~FhRvi~~f~iq~gGDP 405 (406)
|...+.|.|+|+.|+|+||||++.||+||+||+.||+.|||+|+.|||||++|||| ||||
T Consensus 21 ~~~~~~V~l~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Y~g~~FhRvi~~f~iQ-gGd~ 80 (185)
T 2hq6_A 21 PPTNGKVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQ-GGDP 80 (185)
T ss_dssp CCCBCEEEEEETTEEEEEEEBTTTCHHHHHHHHHHHHTTTTTTEECCEEETTTEEE-ECCT
T ss_pred CCCCCEEEEEeCCccEEEEEeCCCCcHHHHHHHHHhhcCccCCCEEEEEECCCEEE-cCCC
Confidence 35678999999999999999999999999999999999999999999999999988 8887
No 8
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=99.72 E-value=5.3e-18 Score=161.16 Aligned_cols=61 Identities=38% Similarity=0.700 Sum_probs=57.5
Q ss_pred CCCccEEEEEecceeEEEEEcCCCChhHHHHHHHHHhcCccCCceeeeecCCeeEeecCCCC
Q 015475 345 PKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRKRWRIYMGEAL 406 (406)
Q Consensus 345 ~k~~~~v~l~T~~G~i~ieL~~d~aP~t~~NF~~L~~~g~Ydgt~FhRvi~~f~iq~gGDP~ 406 (406)
|...++|.|+|+.|+|+||||++.||+||+||+.||+.|||+|+.|||||++|||| ||||.
T Consensus 18 p~~~~~V~l~T~~G~I~ieL~~d~aP~tv~NF~~L~~~g~Ydgt~FhRVi~~FmiQ-gGdp~ 78 (232)
T 3bkp_A 18 GSTRGKVVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQ-GGDPT 78 (232)
T ss_dssp CSCBCEEEEEETTEEEEEEEBTTTCHHHHHHHHHHHHHTTTTTCBEEEEETTTEEE-ECCTT
T ss_pred CCCCCEEEEEECCCcEEEEEcCCCCcHHHHHHHHHhhcCccCCCEEEEEeCCCEEE-cCCCC
Confidence 35688999999999999999999999999999999999999999999999999988 88873
No 9
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A
Probab=99.72 E-value=4.3e-18 Score=154.13 Aligned_cols=58 Identities=38% Similarity=0.650 Sum_probs=55.6
Q ss_pred CccEEEEEecceeEEEEEcCCCChhHHHHHHHHHhcCccCCceeeeecCCeeEeecCCC
Q 015475 347 KKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 347 ~~~~v~l~T~~G~i~ieL~~d~aP~t~~NF~~L~~~g~Ydgt~FhRvi~~f~iq~gGDP 405 (406)
...+|.|+|+.|+|+||||++.||+||+||+.||+.|||+|+.|||||++|||| ||||
T Consensus 10 ~~~~v~l~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQ-gGd~ 67 (166)
T 2x7k_A 10 QPPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQ-GGDP 67 (166)
T ss_dssp CCSEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHHTTTTTEECCEEETTTEEE-ECCT
T ss_pred CCCEEEEEeCCCcEEEEEccCCCCHHHHHHHHHHhcCCCCCCEEEEEECCCEEE-cCCC
Confidence 457999999999999999999999999999999999999999999999999988 8887
No 10
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*
Probab=99.72 E-value=5.9e-18 Score=152.48 Aligned_cols=57 Identities=46% Similarity=0.893 Sum_probs=54.1
Q ss_pred cEEEEEecceeEEEEEcCCCChhHHHHHHHHHhcCccCCceeeeecCCeeEeecCCCC
Q 015475 349 GYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRKRWRIYMGEAL 406 (406)
Q Consensus 349 ~~v~l~T~~G~i~ieL~~d~aP~t~~NF~~L~~~g~Ydgt~FhRvi~~f~iq~gGDP~ 406 (406)
+.|+|+|+.|+|+||||++.||+||+||+.||+.|||+|+.|||||++|||| ||||.
T Consensus 1 m~v~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQ-gGd~~ 57 (161)
T 2ok3_A 1 MSVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQ-TGDPT 57 (161)
T ss_dssp CEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEE-ECCTT
T ss_pred CEEEEEeCCccEEEEEcCCCCcHHHHHHHHHhhhcccCCCEEEEEECCCEEe-cCCCC
Confidence 3689999999999999999999999999999999999999999999999987 88873
No 11
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1
Probab=99.71 E-value=8e-18 Score=153.75 Aligned_cols=59 Identities=32% Similarity=0.548 Sum_probs=55.9
Q ss_pred CCccEEEEEecceeEEEEEcCCCChhHHHHHHHHHhcCccCCceeeeecCCeeEeecCCC
Q 015475 346 KKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 346 k~~~~v~l~T~~G~i~ieL~~d~aP~t~~NF~~L~~~g~Ydgt~FhRvi~~f~iq~gGDP 405 (406)
.....|+|.|+.|+|+||||++.||+||+||+.||+.|||+|+.|||||++|||| ||||
T Consensus 19 ~~~~~v~~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQ-gGd~ 77 (176)
T 2a2n_A 19 RVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQ-TGDP 77 (176)
T ss_dssp CCCSEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEE-ECCT
T ss_pred CCCCEEEEEecCccEEEEEeCCCChHHHHHHHHHhhcCccCCCEEEEEECCcEEE-ccCC
Confidence 3466899999999999999999999999999999999999999999999999988 8887
No 12
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A
Probab=99.71 E-value=6.4e-18 Score=155.53 Aligned_cols=61 Identities=33% Similarity=0.611 Sum_probs=55.8
Q ss_pred CCCCccEEEEEecceeEEEEEcCCCChhHHHHHHHHHhcCccCCceeeeecCCeeEeecCCC
Q 015475 344 NPKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 344 ~~k~~~~v~l~T~~G~i~ieL~~d~aP~t~~NF~~L~~~g~Ydgt~FhRvi~~f~iq~gGDP 405 (406)
......+|+|.|+.|+|+||||++.||+||+||+.||+.|||+|+.|||||++|||| ||||
T Consensus 12 ~~~~~~~v~i~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQ-gGd~ 72 (185)
T 2poe_A 12 ENLYFQGVRIITNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQ-GGDP 72 (185)
T ss_dssp ---CCCEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTEEEEEECTTSEEE-EEET
T ss_pred cCCCceEEEEEecCccEEEEEeCCCCcHHHHHHHHHhccCCCCCCEEEEEECCCEEE-cCCC
Confidence 335678999999999999999999999999999999999999999999999999988 8887
No 13
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1
Probab=99.70 E-value=1.2e-17 Score=154.96 Aligned_cols=58 Identities=38% Similarity=0.745 Sum_probs=55.6
Q ss_pred CccEEEEEecceeEEEEEcCCCChhHHHHHHHHHhcCccCCceeeeecCCeeEeecCCC
Q 015475 347 KKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 347 ~~~~v~l~T~~G~i~ieL~~d~aP~t~~NF~~L~~~g~Ydgt~FhRvi~~f~iq~gGDP 405 (406)
...+|.|+|+.|+|+||||++.||+||+||+.||+.|||+|+.|||||++|||| ||||
T Consensus 37 ~~~~V~l~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Y~g~~FhRVi~~f~iQ-gGd~ 94 (196)
T 2b71_A 37 ERGYITIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQ-GGDP 94 (196)
T ss_dssp HSCEEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEE-EEET
T ss_pred CCcEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHhhcCCcCCCEEEEEeCCcEEE-cCCC
Confidence 467999999999999999999999999999999999999999999999999988 7887
No 14
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}
Probab=99.69 E-value=1.4e-17 Score=155.23 Aligned_cols=58 Identities=38% Similarity=0.650 Sum_probs=55.5
Q ss_pred CccEEEEEecceeEEEEEcCCCChhHHHHHHHHHhcCccCCceeeeecCCeeEeecCCC
Q 015475 347 KKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 347 ~~~~v~l~T~~G~i~ieL~~d~aP~t~~NF~~L~~~g~Ydgt~FhRvi~~f~iq~gGDP 405 (406)
...+|.|+|+.|+|+||||++.||+||+||+.||+.|||+|+.|||||++|||| ||||
T Consensus 10 ~~~~V~l~T~~G~I~ieL~~d~aP~tv~NF~~L~~~g~Ydg~~FhRVi~~F~iQ-gGd~ 67 (203)
T 2k7n_A 10 QPPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQ-GGDP 67 (203)
T ss_dssp CCSEEEEEESSCEEEEEECTTTCTTHHHHHHHHHHHTCGGGCEEEEEETTTEEE-EECS
T ss_pred CCCEEEEEeCCCcEEEEEccCCCcHHHHHHHHHHhcCccCCCEEEEEeCCcEEE-cCCC
Confidence 457999999999999999999999999999999999999999999999999988 8887
No 15
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1
Probab=99.68 E-value=2.9e-17 Score=151.90 Aligned_cols=59 Identities=31% Similarity=0.558 Sum_probs=55.2
Q ss_pred CCccEEEEEecceeEEEEEcCCCChhHHHHHHHHH---------------hcCccCCceeeeecCCeeEeecCCC
Q 015475 346 KKKGYVQLHTTHGDLNIELHCDITPRSCENFITLC---------------ERGYYNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 346 k~~~~v~l~T~~G~i~ieL~~d~aP~t~~NF~~L~---------------~~g~Ydgt~FhRvi~~f~iq~gGDP 405 (406)
....+|+|.|+.|+|+||||++.||+||+||+.|| +.+||+|+.|||||++|||| ||||
T Consensus 21 ~~~~~v~l~t~~G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~Y~g~~FhRVi~~fmiQ-gGd~ 94 (191)
T 1w74_A 21 LATATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQ-GGDP 94 (191)
T ss_dssp CCSEEEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEE-ECCT
T ss_pred CCCeEEEEEecceeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCccCCCEEEEEeCCCEEe-cCCC
Confidence 45689999999999999999999999999999999 46899999999999999988 8887
No 16
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A
Probab=99.62 E-value=4.8e-16 Score=141.50 Aligned_cols=57 Identities=37% Similarity=0.628 Sum_probs=51.6
Q ss_pred ccEEEEE-----ecceeEEEEEcCCCChhHHHHHHHHHh--cCc-cCCceeeeecCCeeEeecCCC
Q 015475 348 KGYVQLH-----TTHGDLNIELHCDITPRSCENFITLCE--RGY-YNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 348 ~~~v~l~-----T~~G~i~ieL~~d~aP~t~~NF~~L~~--~g~-Ydgt~FhRvi~~f~iq~gGDP 405 (406)
...|.|. |+.|+|+||||++.||+||+||+.||+ +|| |+|+.|||||++|||| ||||
T Consensus 10 ~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQ-gGd~ 74 (172)
T 2cmt_A 10 LPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQ-GGDF 74 (172)
T ss_dssp CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEE-ECCT
T ss_pred CCEEEEEEEECCeecceEEEEEcCCCCCHHHHHHHHHhccCCCceECCCEEEEEECCCEEE-cCCc
Confidence 4456665 899999999999999999999999997 589 9999999999999988 8887
No 17
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A
Probab=99.61 E-value=6e-16 Score=140.92 Aligned_cols=50 Identities=34% Similarity=0.684 Sum_probs=47.6
Q ss_pred ecceeEEEEEcCCCChhHHHHHHHHH--hcCc-cCCceeeeecCCeeEeecCCC
Q 015475 355 TTHGDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 355 T~~G~i~ieL~~d~aP~t~~NF~~L~--~~g~-Ydgt~FhRvi~~f~iq~gGDP 405 (406)
|+.|+|+||||++.||+||+||+.|| ++|| |+|+.|||||++|||| ||||
T Consensus 23 t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQ-gGd~ 75 (173)
T 2r99_A 23 KPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQ-GGDF 75 (173)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEE-ECCT
T ss_pred ccceeEEEEECCCCCcHHHHHHHHHhcccCCceecCCEEEEeeCCCEEE-eCCc
Confidence 78999999999999999999999999 4898 9999999999999988 8887
No 18
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...
Probab=99.60 E-value=9.9e-16 Score=138.48 Aligned_cols=50 Identities=36% Similarity=0.739 Sum_probs=48.0
Q ss_pred ecceeEEEEEcCCCChhHHHHHHHHHh--cCc-cCCceeeeecCCeeEeecCCC
Q 015475 355 TTHGDLNIELHCDITPRSCENFITLCE--RGY-YNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 355 T~~G~i~ieL~~d~aP~t~~NF~~L~~--~g~-Ydgt~FhRvi~~f~iq~gGDP 405 (406)
|+.|+|+||||++.||+||+||+.||+ +|| |+|+.|||||++|||| ||||
T Consensus 15 t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQ-gGd~ 67 (165)
T 2z6w_A 15 KPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQ-AGDF 67 (165)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEE-ECCT
T ss_pred EeeeEEEEEEeCCCCcHHHHHHHHHhccCCCccCcCCEEEEEECCCEEE-eCCc
Confidence 579999999999999999999999999 999 9999999999999988 8887
No 19
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A
Probab=99.59 E-value=1.4e-15 Score=139.07 Aligned_cols=57 Identities=32% Similarity=0.606 Sum_probs=52.0
Q ss_pred ccEEEEE-----ecceeEEEEEcCCCChhHHHHHHHHHhcCc--------cCCceeeeecCCeeEeecCCC
Q 015475 348 KGYVQLH-----TTHGDLNIELHCDITPRSCENFITLCERGY--------YNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 348 ~~~v~l~-----T~~G~i~ieL~~d~aP~t~~NF~~L~~~g~--------Ydgt~FhRvi~~f~iq~gGDP 405 (406)
...|.|. |+.|+|+||||++.||+||+||+.||+.+| |+|+.|||||++|||| ||||
T Consensus 10 ~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~g~~~~Y~g~~FhRvi~~f~iQ-gGd~ 79 (177)
T 1mzw_A 10 NPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQ-GGDF 79 (177)
T ss_dssp CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCEETTEECSSTTCBCCEEETTTEEE-ECCT
T ss_pred CCEEEEEEEECCeeceeEEEEEcCCCCcHHHHHHHHHHhcccCCcCccceECCCEEEEEECCCEEE-cCCc
Confidence 4566665 579999999999999999999999999998 9999999999999988 8887
No 20
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A
Probab=99.59 E-value=1.5e-15 Score=138.25 Aligned_cols=51 Identities=33% Similarity=0.554 Sum_probs=48.1
Q ss_pred EecceeEEEEEcCCCChhHHHHHHHHH--hcCc-cCCceeeeecCCeeEeecCCC
Q 015475 354 HTTHGDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 354 ~T~~G~i~ieL~~d~aP~t~~NF~~L~--~~g~-Ydgt~FhRvi~~f~iq~gGDP 405 (406)
.|+.|+|+||||++.||+||+||+.|| +.|| |+|+.|||||++|||| |||+
T Consensus 22 ~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQ-gGd~ 75 (172)
T 2haq_A 22 SEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQ-GGDF 75 (172)
T ss_dssp TEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEE-ECCT
T ss_pred CEecceEEEEEeCCCCcHHHHHHHHHhccCCCcccCCCEEEEEECCCEEe-cCCc
Confidence 378999999999999999999999999 7999 9999999999999988 8883
No 21
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A
Probab=99.58 E-value=1.9e-15 Score=138.37 Aligned_cols=50 Identities=32% Similarity=0.600 Sum_probs=47.6
Q ss_pred ecceeEEEEEcCCCChhHHHHHHHHHh-----------cCccCCceeeeecCCeeEeecCCC
Q 015475 355 TTHGDLNIELHCDITPRSCENFITLCE-----------RGYYNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 355 T~~G~i~ieL~~d~aP~t~~NF~~L~~-----------~g~Ydgt~FhRvi~~f~iq~gGDP 405 (406)
|+.|+|+||||++.||+||+||+.||+ .+||+|+.|||||++|||| ||||
T Consensus 21 t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~Y~g~~FhRvi~~f~iQ-gGd~ 81 (179)
T 2wfi_A 21 QPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQ-GGDF 81 (179)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEE-ECCT
T ss_pred ccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCeECCCEEEEEECCCEEE-cccc
Confidence 789999999999999999999999996 6799999999999999988 8887
No 22
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*
Probab=99.58 E-value=1.8e-15 Score=137.36 Aligned_cols=56 Identities=38% Similarity=0.619 Sum_probs=50.6
Q ss_pred cEEEEEec-----ceeEEEEEcCCCChhHHHHHHHHHh-cCc--------cCCceeeeecCCeeEeecCCC
Q 015475 349 GYVQLHTT-----HGDLNIELHCDITPRSCENFITLCE-RGY--------YNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 349 ~~v~l~T~-----~G~i~ieL~~d~aP~t~~NF~~L~~-~g~--------Ydgt~FhRvi~~f~iq~gGDP 405 (406)
..|.|.++ .|+|+||||++.||+||+||+.||+ .|| |+|+.|||||++|||| ||||
T Consensus 4 ~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQ-gGd~ 73 (170)
T 1qng_A 4 SKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQ-GGDI 73 (170)
T ss_dssp CEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTCEECTTSSEECCTTCBCCEEETTTEEE-ECCT
T ss_pred CEEEEEEeECCEeceeEEEEEcCCCCCHHHHHHHHHhccCCcCccCccceECCCEEEEEECCCEEE-cCCc
Confidence 45666655 9999999999999999999999997 599 9999999999999988 8887
No 23
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1
Probab=99.57 E-value=1.2e-15 Score=138.73 Aligned_cols=51 Identities=29% Similarity=0.470 Sum_probs=48.3
Q ss_pred EEecceeEEEEEcCCCChhHHHHHHHHHh--cCc-cCCceeeeecCCeeEeecCC
Q 015475 353 LHTTHGDLNIELHCDITPRSCENFITLCE--RGY-YNGVAFHRSIRKRWRIYMGE 404 (406)
Q Consensus 353 l~T~~G~i~ieL~~d~aP~t~~NF~~L~~--~g~-Ydgt~FhRvi~~f~iq~gGD 404 (406)
+.|++|+|+||||++.||+||+||+.||+ .|| |+|+.|||||++|||| |||
T Consensus 17 ~~T~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQ-gGd 70 (172)
T 2c3b_A 17 AETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQ-GGD 70 (172)
T ss_dssp SCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEE-ECC
T ss_pred eecccccEEEEEcCCCCcHHHHHHHHHhccCCCcccCCCEEEEEeCCCEEE-eCC
Confidence 45899999999999999999999999998 889 9999999999999988 888
No 24
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A
Probab=99.57 E-value=1.8e-15 Score=136.53 Aligned_cols=50 Identities=26% Similarity=0.482 Sum_probs=47.9
Q ss_pred ecceeEEEEEcCCCChhHHHHHHHHHh--cCc-cCCceeeeecCCeeEeecCCC
Q 015475 355 TTHGDLNIELHCDITPRSCENFITLCE--RGY-YNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 355 T~~G~i~ieL~~d~aP~t~~NF~~L~~--~g~-Ydgt~FhRvi~~f~iq~gGDP 405 (406)
|+.|+|+||||++.||+||+||+.||+ .|| |+|+.|||||++|||| |||+
T Consensus 14 t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~fhRvi~~f~iQ-gGd~ 66 (164)
T 3pmp_A 14 KPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQ-GGDF 66 (164)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEE-ECCT
T ss_pred EEeeEEEEEEeCCCCcHHHHHHHHHhcccCCCcccCCEEEEEECCCeEE-eCCC
Confidence 899999999999999999999999999 999 9999999999999988 8883
No 25
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A
Probab=99.57 E-value=2.6e-15 Score=136.70 Aligned_cols=55 Identities=31% Similarity=0.519 Sum_probs=49.1
Q ss_pred EEEEEe-----cceeEEEEEcCCCChhHHHHHHHHHhc--C--------ccCCceeeeecCCeeEeecCCC
Q 015475 350 YVQLHT-----THGDLNIELHCDITPRSCENFITLCER--G--------YYNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 350 ~v~l~T-----~~G~i~ieL~~d~aP~t~~NF~~L~~~--g--------~Ydgt~FhRvi~~f~iq~gGDP 405 (406)
.|.|.+ +.|+|+||||++.||+||+||+.||+. | ||+|+.|||||++|||| ||||
T Consensus 5 ~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQ-gGd~ 74 (173)
T 2igv_A 5 KVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQ-GGDF 74 (173)
T ss_dssp EEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEE-ECCT
T ss_pred EEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCccCccceECCCEEEEEECCCEEE-cCCC
Confidence 455554 499999999999999999999999975 6 79999999999999988 8887
No 26
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Probab=99.57 E-value=2.1e-15 Score=139.07 Aligned_cols=49 Identities=27% Similarity=0.557 Sum_probs=46.8
Q ss_pred ecceeEEEEEcCCCChhHHHHHHHHHh--cCc-cCCceeeeecCCeeEeecCC
Q 015475 355 TTHGDLNIELHCDITPRSCENFITLCE--RGY-YNGVAFHRSIRKRWRIYMGE 404 (406)
Q Consensus 355 T~~G~i~ieL~~d~aP~t~~NF~~L~~--~g~-Ydgt~FhRvi~~f~iq~gGD 404 (406)
|+.|+|+||||++.||+||+||+.||+ .|| |+|+.|||||++|||| |||
T Consensus 27 t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQ-gGd 78 (188)
T 3ich_A 27 EDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQ-GGD 78 (188)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEE-ECC
T ss_pred EeceeEEEEEcCCCCcHHHHHHHHHhcccCCccccCCEEEEEECCCEEE-cCC
Confidence 789999999999999999999999994 899 9999999999999988 888
No 27
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}
Probab=99.56 E-value=2.3e-15 Score=139.21 Aligned_cols=51 Identities=31% Similarity=0.684 Sum_probs=48.0
Q ss_pred EecceeEEEEEcCCCChhHHHHHHHHHh-----------cCccCCceeeeecCCeeEeecCCC
Q 015475 354 HTTHGDLNIELHCDITPRSCENFITLCE-----------RGYYNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 354 ~T~~G~i~ieL~~d~aP~t~~NF~~L~~-----------~g~Ydgt~FhRvi~~f~iq~gGDP 405 (406)
.|+.|+|+||||++.||+||+||+.||+ .+||+|+.|||||++|||| ||||
T Consensus 30 ~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~Y~g~~FhRVi~~fmiQ-gGd~ 91 (192)
T 2he9_A 30 REPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQ-GGDF 91 (192)
T ss_dssp TEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEE-ECCT
T ss_pred CEecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCeECCCEEEEEECCCEEE-cCcc
Confidence 4799999999999999999999999995 6799999999999999988 8887
No 28
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*
Probab=99.56 E-value=3.5e-15 Score=137.39 Aligned_cols=57 Identities=33% Similarity=0.556 Sum_probs=50.3
Q ss_pred ccEEEEEe-----cceeEEEEEcCCCChhHHHHHHHHHh--cCc--------cCCceeeeecCCeeEeecCCC
Q 015475 348 KGYVQLHT-----THGDLNIELHCDITPRSCENFITLCE--RGY--------YNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 348 ~~~v~l~T-----~~G~i~ieL~~d~aP~t~~NF~~L~~--~g~--------Ydgt~FhRvi~~f~iq~gGDP 405 (406)
...|.|.+ +.|+|+||||++.||+||+||+.||+ .|| |+|+.|||||++|||| ||||
T Consensus 19 ~~~v~~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~Y~g~~FhRVi~~f~iQ-gGd~ 90 (186)
T 2poy_A 19 NPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQ-GGDF 90 (186)
T ss_dssp CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEE-ECCT
T ss_pred CCEEEEEEeECCEecccEEEEEeCCCCcHHHHHHHHHhcccCCccccCccceECCCEEEEEeCCCEEE-eCCC
Confidence 34555554 59999999999999999999999995 789 9999999999999988 8887
No 29
>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1
Probab=99.56 E-value=3.4e-15 Score=141.53 Aligned_cols=57 Identities=28% Similarity=0.462 Sum_probs=51.5
Q ss_pred ccEEEEEe-----cceeEEEEEcCCCChhHHHHHHHHHhcC--------ccCCceeeeecCCeeEeecCCC
Q 015475 348 KGYVQLHT-----THGDLNIELHCDITPRSCENFITLCERG--------YYNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 348 ~~~v~l~T-----~~G~i~ieL~~d~aP~t~~NF~~L~~~g--------~Ydgt~FhRvi~~f~iq~gGDP 405 (406)
...|.|.+ +.|+|+||||++.||+||+||+.||+.+ ||+|+.|||||++|||| ||||
T Consensus 59 ~~~V~~disi~~t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~g~~~~Y~gt~FHRVi~~FmiQ-gGD~ 128 (229)
T 1z81_A 59 NPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQ-GGDF 128 (229)
T ss_dssp CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCSSTTEECCEEETTTEEE-ECCT
T ss_pred CcEEEEEEeECCeecccEEEEEcCCCCCHHHHHHHHHhhCCCCCcCCCceECCCEEEEEeCCCEEE-cCCC
Confidence 45677765 4899999999999999999999999877 79999999999999988 8887
No 30
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*
Probab=99.55 E-value=3e-15 Score=136.77 Aligned_cols=50 Identities=40% Similarity=0.751 Sum_probs=46.8
Q ss_pred ecceeEEEEEcCCCChhHHHHHHHHHhc--------C---ccCCceeeeecCCeeEeecCCC
Q 015475 355 TTHGDLNIELHCDITPRSCENFITLCER--------G---YYNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 355 T~~G~i~ieL~~d~aP~t~~NF~~L~~~--------g---~Ydgt~FhRvi~~f~iq~gGDP 405 (406)
|+.|+|+||||++.||+||+||+.||+. | ||+|+.|||||++|||| ||||
T Consensus 18 ~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~Y~g~~FhRvi~~f~iQ-gGd~ 78 (177)
T 1a58_A 18 NLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQ-GGDF 78 (177)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEE-ECCC
T ss_pred EeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcceeCCCEEEEEECCCEEE-eCCc
Confidence 6799999999999999999999999973 4 99999999999999988 8887
No 31
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}
Probab=99.55 E-value=4.2e-15 Score=137.61 Aligned_cols=50 Identities=38% Similarity=0.656 Sum_probs=47.4
Q ss_pred ecceeEEEEEcCCCChhHHHHHHHHHh--cCc-cCCceeeeecCCeeEeecCCC
Q 015475 355 TTHGDLNIELHCDITPRSCENFITLCE--RGY-YNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 355 T~~G~i~ieL~~d~aP~t~~NF~~L~~--~g~-Ydgt~FhRvi~~f~iq~gGDP 405 (406)
|+.|+|+||||++.||+||+||+.||+ .|| |+|+.|||||++|||| |||+
T Consensus 39 t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQ-gGd~ 91 (193)
T 3k2c_A 39 ESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQ-GGDY 91 (193)
T ss_dssp EEEEEEEEEECTTTSHHHHHHHHHHHHSCTTSSSTTCBEEEEETTTEEE-ECCT
T ss_pred EEeeEEEEEEcCCCChHHHHHHHHHhccccCCcccCCEEEEEeCCCEEE-eCCC
Confidence 789999999999999999999999998 888 9999999999999988 7784
No 32
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}
Probab=99.55 E-value=4.3e-15 Score=136.59 Aligned_cols=58 Identities=31% Similarity=0.489 Sum_probs=51.3
Q ss_pred CccEEEEEec-----ceeEEEEEcCCCChhHHHHHHHHHhc--Cc-cCCceeeeecCCeeEeecCCC
Q 015475 347 KKGYVQLHTT-----HGDLNIELHCDITPRSCENFITLCER--GY-YNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 347 ~~~~v~l~T~-----~G~i~ieL~~d~aP~t~~NF~~L~~~--g~-Ydgt~FhRvi~~f~iq~gGDP 405 (406)
....|.|.++ .|+|+||||++.||+||+||+.||+. || |+|+.|||||++|||| ||||
T Consensus 21 ~~p~v~~di~i~~~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQ-gGd~ 86 (184)
T 3rdd_A 21 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQ-GGDF 86 (184)
T ss_dssp CCCEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEE-ECCT
T ss_pred CCCEEEEEEeECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCcCcccCCCEEEEccCCcEEE-eCCC
Confidence 3556777766 99999999999999999999999964 55 9999999999999988 8885
No 33
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}
Probab=99.55 E-value=2.4e-15 Score=151.12 Aligned_cols=58 Identities=26% Similarity=0.406 Sum_probs=55.2
Q ss_pred CCccEEEEEec--------ceeEEEEEcCCCChhHHHHHHHHHhcCccCCceeeeecCCeeEeecCCC
Q 015475 346 KKKGYVQLHTT--------HGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 346 k~~~~v~l~T~--------~G~i~ieL~~d~aP~t~~NF~~L~~~g~Ydgt~FhRvi~~f~iq~gGDP 405 (406)
..+.+|.|.|+ .|+|+||||++.||+||+||+.||+.|||||+.|||| +||||| ||||
T Consensus 168 ~gra~V~m~t~~~~~~~~~~G~I~IeL~~d~AP~Tv~NFl~L~~~GfYdGt~FHRV-~gFmIQ-gGDp 233 (369)
T 3rfy_A 168 KGRASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQRS-DGFVVQ-TGDP 233 (369)
T ss_dssp CSEEEEEEEEECCSCSSCSEEEEEEEEETTTCHHHHHHHHHHHHTTTTTTEECEEE-EEEEEC-CCCC
T ss_pred CCCeEEEEEEeccCCCcccceEEEEEEeCCCCcHHHHHHHHHhhcCCcCCCeeeee-CCeeEe-cCCC
Confidence 56888999997 8999999999999999999999999999999999999 999987 8888
No 34
>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Probab=99.55 E-value=3.3e-15 Score=137.36 Aligned_cols=50 Identities=28% Similarity=0.466 Sum_probs=46.3
Q ss_pred ecceeEEEEEcCCCChhHHHHHHHHHhc--C-ccCCceeeeecCCeeEeecCCC
Q 015475 355 TTHGDLNIELHCDITPRSCENFITLCER--G-YYNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 355 T~~G~i~ieL~~d~aP~t~~NF~~L~~~--g-~Ydgt~FhRvi~~f~iq~gGDP 405 (406)
|+.|+|+||||++.||+||+||+.||+. | ||+|+.|||||++|||| ||||
T Consensus 24 ~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQ-gGd~ 76 (185)
T 4fru_A 24 EDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQ-GGDF 76 (185)
T ss_dssp EEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEE-ECCT
T ss_pred EecceEEEEEeCCCCcHHHHHHHHHHhcCCCCeEcCCEEEEeeCCCeEE-ECCC
Confidence 4599999999999999999999999964 7 79999999999999988 8887
No 35
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}
Probab=99.54 E-value=4.6e-15 Score=141.10 Aligned_cols=50 Identities=30% Similarity=0.565 Sum_probs=46.1
Q ss_pred ecceeEEEEEcCCCChhHHHHHHHHHh-------------c----C--c-cCCceeeeecCCeeEeecCCC
Q 015475 355 TTHGDLNIELHCDITPRSCENFITLCE-------------R----G--Y-YNGVAFHRSIRKRWRIYMGEA 405 (406)
Q Consensus 355 T~~G~i~ieL~~d~aP~t~~NF~~L~~-------------~----g--~-Ydgt~FhRvi~~f~iq~gGDP 405 (406)
|+.|+|+||||++.||+||+||+.||+ . | | |+|+.|||||++|||| |||+
T Consensus 26 t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~~~~Y~gt~FHRVi~~FmiQ-gGd~ 95 (234)
T 2ose_A 26 EIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNNYIV-SGDI 95 (234)
T ss_dssp EEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------CCCSTTCBCCEEETTTEEE-ECCC
T ss_pred cccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCCceEECCcEEEEEECCCEEE-cCCc
Confidence 999999999999999999999999998 3 5 8 9999999999999998 8883
No 36
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.54 E-value=6.1e-15 Score=147.18 Aligned_cols=58 Identities=34% Similarity=0.576 Sum_probs=52.7
Q ss_pred ccEEEEEec-----ceeEEEEEcCCCChhHHHHHHHHHhc--------C---ccCCceeeeecCCeeEeecCCCC
Q 015475 348 KGYVQLHTT-----HGDLNIELHCDITPRSCENFITLCER--------G---YYNGVAFHRSIRKRWRIYMGEAL 406 (406)
Q Consensus 348 ~~~v~l~T~-----~G~i~ieL~~d~aP~t~~NF~~L~~~--------g---~Ydgt~FhRvi~~f~iq~gGDP~ 406 (406)
...|.|.|+ .|+|+||||++.||+||+||+.||+. | ||+|+.||||||||||| ||||.
T Consensus 15 ~~~v~~~~~~~~~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q-~Gd~~ 88 (370)
T 1ihg_A 15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQ-GGDFS 88 (370)
T ss_dssp SCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEE-ECCTT
T ss_pred CCeEEEEEEECCEecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEEE-CCCCC
Confidence 457888876 89999999999999999999999987 6 79999999999999988 88873
No 37
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.47 E-value=2.4e-14 Score=108.95 Aligned_cols=56 Identities=23% Similarity=0.514 Sum_probs=53.4
Q ss_pred ccccCCCCCCCCCeec-CCCCEeeHhhHHHHHHhcCCCCCCCCCCCCCCcccccccc
Q 015475 40 YCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHK 95 (406)
Q Consensus 40 ~~C~LSl~Pl~~PV~t-~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDLi~l~f~~ 95 (406)
++|+||++++++||++ .+|++||+++|.+||.++++||+||++|+.+||+++++.+
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~~~ 60 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVPSA 60 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCCC-
T ss_pred EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECccCC
Confidence 6899999999999999 9999999999999999999999999999999999999864
No 38
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.25 E-value=5.6e-12 Score=107.12 Aligned_cols=115 Identities=15% Similarity=0.317 Sum_probs=98.7
Q ss_pred CccccCCCCCCCCC-------eecCCCCEeeHhhHHHHHHhcCCCCCCCCCCCCCCccccccccCCCCcccccccccccc
Q 015475 39 FYCCALTFTPFEDP-------VCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEYHCPVLNKVFT 111 (406)
Q Consensus 39 f~~C~LSl~Pl~~P-------V~t~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDLi~l~f~~n~~~~~~CPvt~k~f~ 111 (406)
-..|+|++..|.+| +..+-||+|...+|.+||.....+|+-+.++...++.++.+.. ..+.|||+...|.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~~---~~~~C~iC~~~~~ 83 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIGS---GTVSCPICMDGYS 83 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCSS---SSCBCTTTCCBHH
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccccCC---CCCCCCCCCCccc
Confidence 45799999999999 7789999999999999999999999999999999998876643 3578999999987
Q ss_pred Cc---eeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEEe
Q 015475 112 EF---THIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 158 (406)
Q Consensus 112 ~~---t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~L 158 (406)
.. .+.+.+-+|||+|+..++.+.... ...||+|..++..+|++.|
T Consensus 84 ~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 84 EIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINHKRYHPI 131 (133)
T ss_dssp HHHHTTCCEEEETTSBEEEHHHHHHHHHH--CSBCTTTCCBCCGGGEEEE
T ss_pred cccccCcceEeCCCCChhhHHHHHHHHHc--CCCCCCCCCcCChhcceee
Confidence 52 344456799999999999988653 3489999999999999875
No 39
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.03 E-value=2e-10 Score=92.40 Aligned_cols=63 Identities=22% Similarity=0.195 Sum_probs=57.9
Q ss_pred CCCC-CccccCCCCCCCCCeecCCCCEeeHhhHHHHHHhcCCCCCCCCCCCCCCccccccccCC
Q 015475 35 KRLP-FYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNA 97 (406)
Q Consensus 35 ~~lp-f~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDLi~l~f~~n~ 97 (406)
..+| ...|+||+.+|.+||+++.||.|++.+|..||..+..||+++.+++..+|+++...++.
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~ 72 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQ 72 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHH
T ss_pred hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHH
Confidence 3444 89999999999999999999999999999999999999999999999999999887764
No 40
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.03 E-value=2.1e-10 Score=94.84 Aligned_cols=66 Identities=17% Similarity=0.198 Sum_probs=59.4
Q ss_pred CCCCCC-CccccCCCCCCCCCeecCCC-CEeeHhhHHHHHHhcCCCCCCCCCCCCCCccccccccCCC
Q 015475 33 PFKRLP-FYCCALTFTPFEDPVCTADG-SVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAE 98 (406)
Q Consensus 33 ~~~~lp-f~~C~LSl~Pl~~PV~t~~G-~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDLi~l~f~~n~~ 98 (406)
.+..+| .+.|+||+.+|.+||+++.| |.||+.+|..||..+..||++++++...+|+++...++..
T Consensus 15 ~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I 82 (98)
T 1wgm_A 15 TYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKI 82 (98)
T ss_dssp CCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHH
T ss_pred hhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHH
Confidence 344455 89999999999999999999 9999999999999999999999999999999998887653
No 41
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.96 E-value=3.8e-10 Score=93.64 Aligned_cols=62 Identities=19% Similarity=0.157 Sum_probs=57.4
Q ss_pred CCCCccccCCCCCCCCCeecCCCCEeeHhhHHHHHHhcCCCCCCCCCCCCCCccccccccCC
Q 015475 36 RLPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNA 97 (406)
Q Consensus 36 ~lpf~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDLi~l~f~~n~ 97 (406)
......|+||+.+|.+||+++.||.||+.+|..||..+..||+|+.+++..+|+++...++.
T Consensus 26 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~ 87 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQ 87 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHH
T ss_pred CcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHH
Confidence 34489999999999999999999999999999999988999999999999999999887764
No 42
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.87 E-value=1.2e-09 Score=99.98 Aligned_cols=65 Identities=25% Similarity=0.449 Sum_probs=58.5
Q ss_pred CCCCCCccccCCCCCCCCCeecCCCCEeeHhhHHHHHHhcC-CCCCCCCCCCCCCccccccccCCC
Q 015475 34 FKRLPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYG-KHPVTGTPLKLEDLIPLTFHKNAE 98 (406)
Q Consensus 34 ~~~lpf~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~~~-~~Pvtg~~l~lkDLi~l~f~~n~~ 98 (406)
....+..+|+||+.+|.+||+++.||+||+.+|..||..++ .||+||.+++..+|+++...++..
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~I 166 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVI 166 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHH
T ss_pred cCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHH
Confidence 34566999999999999999999999999999999999865 499999999999999998887653
No 43
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.72 E-value=5.6e-09 Score=85.27 Aligned_cols=59 Identities=22% Similarity=0.317 Sum_probs=50.3
Q ss_pred CCccccCCCCCCCCCeecC-CCCEeeHhhHHHHHHhcC------CCCCCCCC---CCCCCccccccccC
Q 015475 38 PFYCCALTFTPFEDPVCTA-DGSVFELMSITPYIRKYG------KHPVTGTP---LKLEDLIPLTFHKN 96 (406)
Q Consensus 38 pf~~C~LSl~Pl~~PV~t~-~G~lf~ke~Il~~Ll~~~------~~Pvtg~~---l~lkDLi~l~f~~n 96 (406)
....|+||+++|.+||+++ .||+|++.+|..||..++ .||+||.+ +...+|++....++
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~ 74 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRR 74 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHH
T ss_pred cEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHH
Confidence 4577999999999999995 999999999999999762 79998776 88888887766554
No 44
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.62 E-value=2e-08 Score=95.20 Aligned_cols=64 Identities=27% Similarity=0.496 Sum_probs=56.5
Q ss_pred CCCCCCccccCCCCCCCCCeecCCCCEeeHhhHHHHHHhcCC-CCCCCCCCCCCCccccccccCC
Q 015475 34 FKRLPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGK-HPVTGTPLKLEDLIPLTFHKNA 97 (406)
Q Consensus 34 ~~~lpf~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~~~~-~Pvtg~~l~lkDLi~l~f~~n~ 97 (406)
...+++..|+||+.+|.+||+++.||+||+.||..||...+. ||+|+.+++..+|++....++.
T Consensus 203 ~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~ 267 (281)
T 2c2l_A 203 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEV 267 (281)
T ss_dssp CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHH
T ss_pred CCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHH
Confidence 345669999999999999999999999999999999998654 9999999999999987766653
No 45
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.41 E-value=2.6e-07 Score=71.86 Aligned_cols=62 Identities=21% Similarity=0.386 Sum_probs=53.5
Q ss_pred CCCCCccccCCCCCCCCCeecCCCCEeeHhhHHHHHHh-cCCCCCCCCCCCCCCccccccccC
Q 015475 35 KRLPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRK-YGKHPVTGTPLKLEDLIPLTFHKN 96 (406)
Q Consensus 35 ~~lpf~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~-~~~~Pvtg~~l~lkDLi~l~f~~n 96 (406)
.......|+|++.+|.+||+++.||+|++.+|..||.. +..||+.+.++...+|++.....+
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~ 66 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKS 66 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHH
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHH
Confidence 34557899999999999999999999999999999986 678999999999888887665543
No 46
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.27 E-value=5.5e-07 Score=68.06 Aligned_cols=56 Identities=18% Similarity=0.291 Sum_probs=47.5
Q ss_pred ccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEEecC
Q 015475 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQN 160 (406)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~Lqd 160 (406)
.|+||||+..|.+- |...+||+||..++|++.... +..||+|+++++.+|+|.++.
T Consensus 3 ~~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~--~~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKD--TGNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHH--HSBCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHh--CCCCcCCcCCCChhhcEECcc
Confidence 48999999999863 544599999999999999753 457999999999999999864
No 47
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.13 E-value=2.4e-06 Score=64.18 Aligned_cols=59 Identities=14% Similarity=0.250 Sum_probs=49.2
Q ss_pred Cccccccccc-cccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEEe
Q 015475 99 GEYHCPVLNK-VFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 158 (406)
Q Consensus 99 ~~~~CPvt~k-~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~L 158 (406)
.++.|||+.. .|.+....+++.+|||+|+..+|.++... ....||+|..++...|++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-GAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT-TSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc-CCCcCCCCCCccccccceee
Confidence 3688999999 88887666667799999999999999542 35689999999999998864
No 48
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=98.06 E-value=9.1e-07 Score=97.99 Aligned_cols=68 Identities=21% Similarity=0.211 Sum_probs=60.4
Q ss_pred CCCCCCccccCCCCCCCCCeecCCC-CEeeHhhHHHHHHhcCCCCCCCCCCCCCCccccccccCCCCcc
Q 015475 34 FKRLPFYCCALTFTPFEDPVCTADG-SVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEY 101 (406)
Q Consensus 34 ~~~lpf~~C~LSl~Pl~~PV~t~~G-~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDLi~l~f~~n~~~~~ 101 (406)
...+.+.+|+||++.+.|||+.++| +.||+.+|..||+.+++||+|+.+|+..+|+|.+-.+....+|
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w 954 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCF 954 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHH
Confidence 4556699999999999999999997 7999999999999999999999999999999988777654444
No 49
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.87 E-value=2.5e-06 Score=82.03 Aligned_cols=58 Identities=21% Similarity=0.423 Sum_probs=44.5
Q ss_pred CCCCccccCCCCCCCCCeec-CCCCEeeHhhHHHHHHhcC--CCCCCC--CCCCCCCcccccc
Q 015475 36 RLPFYCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKYG--KHPVTG--TPLKLEDLIPLTF 93 (406)
Q Consensus 36 ~lpf~~C~LSl~Pl~~PV~t-~~G~lf~ke~Il~~Ll~~~--~~Pvtg--~~l~lkDLi~l~f 93 (406)
......|+||+.+|.+||.+ ..||.||+.+|..|+...+ .||++| +++...||++...
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~ 240 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPI 240 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHH
Confidence 34577899999999999986 8999999999999997642 466644 6666666655433
No 50
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.85 E-value=2e-05 Score=65.04 Aligned_cols=54 Identities=15% Similarity=0.235 Sum_probs=45.8
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEE
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~ 157 (406)
..+|.||||...|.+= |. -+|||+|+..||.+.-. .+..||+|+++++..|+|+
T Consensus 27 p~~~~CpI~~~~m~dP---V~-~~cGhtf~r~~I~~~l~--~~~~cP~~~~~l~~~~L~p 80 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP---VR-LPSGTIMDRSIILRHLL--NSPTDPFNRQTLTESMLEP 80 (100)
T ss_dssp STTTBCTTTCSBCSSE---EE-ETTTEEEEHHHHHHHTT--SCSBCSSSCCBCCTTSSEE
T ss_pred cHhhCCcCccCcccCC---eE-CCCCCEEchHHHHHHHH--cCCCCCCCCCCCChhhceE
Confidence 3579999999999873 43 46999999999999975 4678999999999988885
No 51
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.83 E-value=1.6e-05 Score=63.46 Aligned_cols=54 Identities=17% Similarity=0.213 Sum_probs=45.5
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEE
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~ 157 (406)
..+|.||||...|.+= | +-+|||+|+..||.+... .+..||+|+++|+..++|+
T Consensus 12 p~~~~CpI~~~~m~dP---V-~~~cGhtf~r~~I~~~l~--~~~~cP~~~~~l~~~~l~p 65 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP---V-RLPSGTVMDRSIILRHLL--NSPTDPFNRQMLTESMLEP 65 (85)
T ss_dssp CTTTBCTTTCSBCSSE---E-ECTTSCEEEHHHHHHHHH--HCSBCTTTCCBCCGGGCEE
T ss_pred chheECcccCchhcCC---e-ECCCCCEECHHHHHHHHh--cCCCCCCCcCCCChHhcch
Confidence 3579999999999873 4 446999999999999975 3578999999999888775
No 52
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.79 E-value=2.7e-05 Score=63.99 Aligned_cols=54 Identities=13% Similarity=0.219 Sum_probs=45.7
Q ss_pred CCccccccccccccCceeEEEEccCC-eeehHHHHHHHhhccCCccccCCCCCCCCCCeEE
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTG-NVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG-~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~ 157 (406)
..+|.||||...|.+= | +-+|| |+|+..||.+... .+..||+|+++++..++|+
T Consensus 20 p~~~~CpI~~~~m~dP---V-~~~cG~htf~r~cI~~~l~--~~~~cP~~~~~l~~~~L~p 74 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP---V-VLPSSRVTVDRSTIARHLL--SDQTDPFNRSPLTMDQIRP 74 (98)
T ss_dssp CTTTBCTTTCSBCSSE---E-ECTTTCCEEEHHHHHHHTT--TSCBCTTTCSBCCTTTSEE
T ss_pred cHhcCCcCccccccCC---e-ECCCCCeEECHHHHHHHHH--hCCCCCCCCCCCChhhceE
Confidence 4579999999999873 3 45899 9999999999975 3568999999999888884
No 53
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.77 E-value=2.1e-05 Score=58.14 Aligned_cols=58 Identities=14% Similarity=0.308 Sum_probs=47.8
Q ss_pred CccccccccccccCc---eeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEEe
Q 015475 99 GEYHCPVLNKVFTEF---THIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 158 (406)
Q Consensus 99 ~~~~CPvt~k~f~~~---t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~L 158 (406)
+.+.|||+...|.+. ...+++.+|||+|+.+++.+.... +..||+|..++...|++.|
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH--CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc--CCCCCCCCccCCccceeee
Confidence 357899999999763 245567799999999999998653 5589999999999999875
No 54
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.73 E-value=2.2e-05 Score=61.79 Aligned_cols=59 Identities=15% Similarity=0.231 Sum_probs=46.9
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhcc-CCccccCCCCCCCCCCeE
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKT-KNWKELLTDEPFTKEDLI 156 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~-k~~~c~vc~~~f~~~DII 156 (406)
...+.|||+...|.+..+...+.+|||+|+..|+.++.... ....||+|..++...||.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~ 72 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLT 72 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTT
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHH
Confidence 44688999999998866544455999999999999986532 246899999999887654
No 55
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.67 E-value=0.00013 Score=56.62 Aligned_cols=60 Identities=20% Similarity=0.262 Sum_probs=50.5
Q ss_pred CCCCccccCCCCCCCCCeecCCCCEeeHhhHHHHHHh------cCCCCCCCCCCCCCCcccccccc
Q 015475 36 RLPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRK------YGKHPVTGTPLKLEDLIPLTFHK 95 (406)
Q Consensus 36 ~lpf~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~------~~~~Pvtg~~l~lkDLi~l~f~~ 95 (406)
......|+|++.++.+|+..+-||+|+..+|..|+.. ...||+.+.++...+|.+.....
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~ 81 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVA 81 (85)
T ss_dssp CCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCC
T ss_pred CccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHH
Confidence 3446789999999999999999999999999999998 45788888888888777665443
No 56
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=0.00013 Score=55.76 Aligned_cols=56 Identities=11% Similarity=0.061 Sum_probs=50.2
Q ss_pred CCCCccccCCCCCCCCCeec-CCCCEeeHhhHHHHHHhcCCCCCCCCCCCCCCcccc
Q 015475 36 RLPFYCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPL 91 (406)
Q Consensus 36 ~lpf~~C~LSl~Pl~~PV~t-~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDLi~l 91 (406)
......|+|++..+.+||.. +-||+|+..+|..||.....+|+-+.++...|++.+
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 12 LTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCC
T ss_pred cCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccccc
Confidence 34478899999999999997 999999999999999988899999999998888764
No 57
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.66 E-value=2.4e-05 Score=59.17 Aligned_cols=59 Identities=15% Similarity=0.349 Sum_probs=48.2
Q ss_pred CCccccccccccccCc---eeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEEe
Q 015475 98 EGEYHCPVLNKVFTEF---THIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 158 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~---t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~L 158 (406)
.+++.|||+...|.+. ...+++.+|||+|+..+|.+.... ...||+|..++...+++.|
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINHKRYHPI 69 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH--CSBCTTTCCBCCCCSCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc--CCCCCCCCCccChhheeec
Confidence 4578999999999763 355667899999999999998653 3589999999999888754
No 58
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.65 E-value=7.3e-05 Score=57.80 Aligned_cols=55 Identities=16% Similarity=0.238 Sum_probs=44.9
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEE
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~ 157 (406)
..++.|||+...|.+- |.+ +|||+|+..||.+.... ....||+|..++...++++
T Consensus 6 ~~~~~C~IC~~~~~~P---v~~-~CgH~fc~~Ci~~~~~~-~~~~CP~C~~~~~~~~l~~ 60 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP---VIV-STGQTYERSSIQKWLDA-GHKTCPKSQETLLHAGLTP 60 (78)
T ss_dssp SSSSSCTTTSCCCSSE---EEE-TTTEEEEHHHHHHHHTT-TCCBCTTTCCBCSSCCCEE
T ss_pred cccCCCCCccccccCC---EEc-CCCCeecHHHHHHHHHH-CcCCCCCCcCCCChhhCcc
Confidence 3578999999999763 333 89999999999998742 3578999999999887764
No 59
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.64 E-value=0.00013 Score=56.61 Aligned_cols=61 Identities=16% Similarity=0.221 Sum_probs=52.2
Q ss_pred CCCCCccccCCCCCCCCCeecCCCCEeeHhhHHHHHHh------cCCCCCCCCCCCCCCcccccccc
Q 015475 35 KRLPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRK------YGKHPVTGTPLKLEDLIPLTFHK 95 (406)
Q Consensus 35 ~~lpf~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~------~~~~Pvtg~~l~lkDLi~l~f~~ 95 (406)
.......|+|++..+.+|+..+-||+|+..+|..|+.. ...||+-+.++...+|.+.....
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~ 81 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVA 81 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCC
T ss_pred HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHH
Confidence 34457889999999999999999999999999999998 56899999998888887665544
No 60
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.60 E-value=5.8e-05 Score=61.68 Aligned_cols=56 Identities=14% Similarity=0.338 Sum_probs=48.2
Q ss_pred CccccCCCCCCCCCee-cCCCCEeeHhhHHHHHHhc-CCCCCCCCCCCCCCccccccc
Q 015475 39 FYCCALTFTPFEDPVC-TADGSVFELMSITPYIRKY-GKHPVTGTPLKLEDLIPLTFH 94 (406)
Q Consensus 39 f~~C~LSl~Pl~~PV~-t~~G~lf~ke~Il~~Ll~~-~~~Pvtg~~l~lkDLi~l~f~ 94 (406)
...|+|++..|.+||. .+-||+|++.+|..|+... ..||+.+.++...+|++..+.
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~ 79 (100)
T 3lrq_A 22 VFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWA 79 (100)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTH
T ss_pred CCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHH
Confidence 5679999999999999 7999999999999999987 478888888877777766544
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.59 E-value=5.6e-05 Score=68.94 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=45.1
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEE
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~ 157 (406)
..+|.||||...|.+- |. -+|||+|+..||.+.-.... ..||+|+.+|+..|+|+
T Consensus 104 p~~f~CPI~~elm~DP---V~-~~~Ghtfer~~I~~~l~~~~-~tcP~t~~~l~~~~L~p 158 (179)
T 2f42_A 104 PDYLCGKISFELMREP---CI-TPSGITYDRKDIEEHLQRVG-HFDPVTRSPLTQDQLIP 158 (179)
T ss_dssp CGGGBCTTTCSBCSSE---EE-CTTSCEEEHHHHHHHHHHTC-SBCTTTCCBCCGGGCEE
T ss_pred cHhhcccCccccCCCC---eE-CCCCCEECHHHHHHHHHhCC-CCCCCCcCCCChhhCcc
Confidence 4579999999999872 43 39999999999999875322 26999999999888885
No 62
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.58 E-value=6.8e-05 Score=57.31 Aligned_cols=55 Identities=7% Similarity=0.073 Sum_probs=45.9
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEE
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~ 157 (406)
...+.|||+...|.+- +.+.+|||+|+..+|.+.... ...||+|..++...|++.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~~ 67 (72)
T 2djb_A 13 TPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYY--SNRCPKCNIVVHQTQPLS 67 (72)
T ss_dssp CGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHH--CSSCTTTCCCCCSSCSCC
T ss_pred CCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHc--CCcCCCcCcccCcccccc
Confidence 4468999999999873 556799999999999988643 468999999999988775
No 63
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.58 E-value=0.00016 Score=54.87 Aligned_cols=54 Identities=20% Similarity=0.442 Sum_probs=43.6
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhc-cCCccccCCCCCCCCCCe
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK-TKNWKELLTDEPFTKEDL 155 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~-~k~~~c~vc~~~f~~~DI 155 (406)
...+.|||+...|.+ .+.+ +|||+|+..||.++... .....||+|..++..+||
T Consensus 18 ~~~~~C~IC~~~~~~---~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 18 QEEVICPICLDILQK---PVTI-DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCBCTTTCSBCSS---EEEC-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred ccCCEeccCCcccCC---eEEc-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 456899999999985 2434 99999999999998642 235689999999998775
No 64
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.57 E-value=6e-05 Score=56.93 Aligned_cols=56 Identities=14% Similarity=0.282 Sum_probs=50.5
Q ss_pred CCccccCCCCCCCCC-------eecCCCCEeeHhhHHHHHHhcCCCCCCCCCCCCCCcccccc
Q 015475 38 PFYCCALTFTPFEDP-------VCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTF 93 (406)
Q Consensus 38 pf~~C~LSl~Pl~~P-------V~t~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDLi~l~f 93 (406)
.-..|+|++.++.+| +..+-||+|...+|.+||..+..+|+-+.++..+++.++-|
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l 71 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 71 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheeeccC
Confidence 356799999999988 77799999999999999999999999999999999988753
No 65
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.57 E-value=0.00012 Score=56.81 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=46.7
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhcc----CCccccCCCCCCCCCCeEEec
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKT----KNWKELLTDEPFTKEDLITIQ 159 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~----k~~~c~vc~~~f~~~DII~Lq 159 (406)
...+.|||+...|.+- + +-+|||+|+..|+.+..... ....||+|..++...++....
T Consensus 17 ~~~~~C~IC~~~~~~p---~-~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~ 78 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP---V-SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNL 78 (85)
T ss_dssp CTTTSCTTTCSCCSSC---E-ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECS
T ss_pred ccCCCCcCCChhhCcc---e-eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCH
Confidence 4568999999999764 2 45899999999999986542 267899999999988877643
No 66
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.57 E-value=7.7e-05 Score=60.46 Aligned_cols=57 Identities=21% Similarity=0.282 Sum_probs=44.4
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhcc----CCccccC--CCCC-CCCCCeEE
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKT----KNWKELL--TDEP-FTKEDLIT 157 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~----k~~~c~v--c~~~-f~~~DII~ 157 (406)
..+|.||||...|.+- |.+..|||+|+..||.+..... ....||+ |... ++..|+++
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~p 68 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQ 68 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEE
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcC
Confidence 3579999999999873 5555699999999999997532 2468999 5555 88888774
No 67
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.56 E-value=4.2e-05 Score=56.45 Aligned_cols=54 Identities=15% Similarity=0.316 Sum_probs=49.2
Q ss_pred ccccCCCCCCCCC-------eecCCCCEeeHhhHHHHHHhcCCCCCCCCCCCCCCcccccc
Q 015475 40 YCCALTFTPFEDP-------VCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTF 93 (406)
Q Consensus 40 ~~C~LSl~Pl~~P-------V~t~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDLi~l~f 93 (406)
..|+|++..+.+| +..+-||+|..++|.+||.....+|+-+.++...++++|-|
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceeeeeC
Confidence 5799999999887 67799999999999999999899999999999999988754
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.00012 Score=70.49 Aligned_cols=92 Identities=15% Similarity=0.258 Sum_probs=67.0
Q ss_pred CEeeHhhHHHHHHhcCCCCCCCC--CCCCCCccccccccCCCCccccccccccccCceeEEEEccCCeeehHHHHHHHhh
Q 015475 59 SVFELMSITPYIRKYGKHPVTGT--PLKLEDLIPLTFHKNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNI 136 (406)
Q Consensus 59 ~lf~ke~Il~~Ll~~~~~Pvtg~--~l~lkDLi~l~f~~n~~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~ 136 (406)
.+|..-..+.|+..+-.+|+-+. .-.=.||+- . ....++.||||...|.+= |.+..|||+|+..||.+...
T Consensus 142 ~~~~~lk~~~~i~~~P~~~lPd~~~~~dDDDI~v---~-~~~~el~CPIcl~~f~DP---Vts~~CGHsFcR~cI~~~~~ 214 (267)
T 3htk_C 142 DTLKILKVLPYIWNDPTCVIPDLQNPADEDDLQI---E-GGKIELTCPITCKPYEAP---LISRKCNHVFDRDGIQNYLQ 214 (267)
T ss_dssp HHHHHHHHHHHHHHCTTBCCCCCSSTTCSSCCCC---C-SSBCCSBCTTTSSBCSSE---EEESSSCCEEEHHHHHHHST
T ss_pred hHHHHHHHccccccCCCCCCCCCCCCCCCcccee---c-CCceeeECcCccCcccCC---eeeCCCCCcccHHHHHHHHH
Confidence 46677778888888766665322 122234322 1 124578999999999774 55679999999999999976
Q ss_pred ccCCccccC--CCCCCCCCCeEE
Q 015475 137 KTKNWKELL--TDEPFTKEDLIT 157 (406)
Q Consensus 137 ~~k~~~c~v--c~~~f~~~DII~ 157 (406)
....+.||+ |.+++...|+++
T Consensus 215 ~~~~~~CPvtGCr~~l~~~dL~p 237 (267)
T 3htk_C 215 GYTTRDCPQAACSQVVSMRDFVR 237 (267)
T ss_dssp TCSCEECSGGGCSCEECGGGEEE
T ss_pred hCCCCCCCcccccCcCchhhCCc
Confidence 545689999 999999988875
No 69
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.53 E-value=9.7e-05 Score=58.87 Aligned_cols=49 Identities=12% Similarity=0.041 Sum_probs=39.4
Q ss_pred CCCCCccccCCCCCCCCCeecC-CCCEeeHhhHHHHHHhcC--CCCCCCCCC
Q 015475 35 KRLPFYCCALTFTPFEDPVCTA-DGSVFELMSITPYIRKYG--KHPVTGTPL 83 (406)
Q Consensus 35 ~~lpf~~C~LSl~Pl~~PV~t~-~G~lf~ke~Il~~Ll~~~--~~Pvtg~~l 83 (406)
.......|+|++..|.+||..+ -||.|++.+|..|+...+ .||+.+.++
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 3445789999999999999998 799999999999998643 455555443
No 70
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.52 E-value=5.6e-05 Score=63.49 Aligned_cols=69 Identities=29% Similarity=0.395 Sum_probs=55.3
Q ss_pred CCCCccccCCCCCCCCCeecCCCCEeeHhhHHHHHHhcC-CCCCCCCCCCCCCccccccccCC--CCccccc
Q 015475 36 RLPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYG-KHPVTGTPLKLEDLIPLTFHKNA--EGEYHCP 104 (406)
Q Consensus 36 ~lpf~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~~~-~~Pvtg~~l~lkDLi~l~f~~n~--~~~~~CP 104 (406)
......|+|++.++.+||.++-||+|+..+|..||...+ .||+.+.++...+|++..+..+. .-...||
T Consensus 15 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~C~ 86 (118)
T 3hct_A 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCP 86 (118)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECS
T ss_pred CCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccceeECC
Confidence 334679999999999999999999999999999999876 88888888888777766655443 2345566
No 71
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.48 E-value=0.00011 Score=54.98 Aligned_cols=53 Identities=21% Similarity=0.338 Sum_probs=43.7
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCe
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDL 155 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DI 155 (406)
...+.|||+...|.+-.. -+|||+|+..+|.+... .....||+|..++..+||
T Consensus 13 ~~~~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQ----TECGHRFCESCMAALLS-SSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCEECTTTCCEESSCCC----CSSSCCCCHHHHHHHHT-TSSCCCTTTCCCCCTTTC
T ss_pred CcCCCCCCCChHhcCeeE----CCCCCHHHHHHHHHHHH-hCcCCCCCCCcCCChhhc
Confidence 557899999999976422 49999999999999863 345689999999998876
No 72
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.46 E-value=7.2e-05 Score=70.56 Aligned_cols=55 Identities=18% Similarity=0.204 Sum_probs=44.5
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEE
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~ 157 (406)
...|.||||...|.+- | +-+|||+||..||.+.-... ...||+|+.+++..++|+
T Consensus 206 ~~~~~c~i~~~~~~dP---v-~~~~gh~f~~~~i~~~~~~~-~~~cP~~~~~~~~~~l~~ 260 (281)
T 2c2l_A 206 PDYLCGKISFELMREP---C-ITPSGITYDRKDIEEHLQRV-GHFNPVTRSPLTQEQLIP 260 (281)
T ss_dssp CSTTBCTTTCSBCSSE---E-ECSSCCEEETTHHHHHHHHT-CSSCTTTCCCCCGGGCEE
T ss_pred CcccCCcCcCCHhcCC---e-ECCCCCEECHHHHHHHHHHC-CCCCcCCCCCCchhcCcc
Confidence 3578999999999873 3 45799999999999886532 234999999999888874
No 73
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.45 E-value=0.00032 Score=54.64 Aligned_cols=47 Identities=17% Similarity=0.191 Sum_probs=39.7
Q ss_pred CCccccCCCCCCCCCeecCCCCEeeHhhHHHHHHhcCCCCCCCCCCC
Q 015475 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLK 84 (406)
Q Consensus 38 pf~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~ 84 (406)
....|+|++.++.+||+++-||+|+..+|..|+.....||+.+.++.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 35689999999999999999999999999999987656666655554
No 74
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.40 E-value=0.00013 Score=60.06 Aligned_cols=55 Identities=15% Similarity=0.265 Sum_probs=46.0
Q ss_pred CccccCCCCCCCCCeecCCCCEeeHhhHHHHHHhcC---CCCCCCCCCCCCCcccccc
Q 015475 39 FYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYG---KHPVTGTPLKLEDLIPLTF 93 (406)
Q Consensus 39 f~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~~~---~~Pvtg~~l~lkDLi~l~f 93 (406)
...|+|++.++.+|+.++-||+|+..+|..|+.... .||+.+.++...+|.+...
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 78 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTR 78 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCS
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHH
Confidence 457999999999999999999999999999998654 6787777777777665443
No 75
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.39 E-value=0.00013 Score=54.77 Aligned_cols=53 Identities=13% Similarity=0.103 Sum_probs=46.3
Q ss_pred CCCCccccCCCCCCCCCeecCCCCEeeHhhHHHHHH-hcCCCCCCCCCCCCCCc
Q 015475 36 RLPFYCCALTFTPFEDPVCTADGSVFELMSITPYIR-KYGKHPVTGTPLKLEDL 88 (406)
Q Consensus 36 ~lpf~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll-~~~~~Pvtg~~l~lkDL 88 (406)
......|+|++.++.+||.++-||+|+..+|..|+. ....+|+.+.++..++|
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred CCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 345788999999999999999999999999999995 45679999888888776
No 76
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.38 E-value=9.6e-05 Score=57.10 Aligned_cols=58 Identities=12% Similarity=0.092 Sum_probs=47.1
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEEe
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 158 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~L 158 (406)
...+.|||+...|.....++. .+|||+|+..||.+... ....||+|..++...++++.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~-~~C~H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQ-LPCNHLFHDSCIVPWLE--QHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEE-CTTSCEEETTTTHHHHT--TTCSCTTTCCCCCCSCSCCC
T ss_pred CCCCCCeeCCccccCCCCEEE-eCCCCeecHHHHHHHHH--cCCcCcCcCCccCCcccCCC
Confidence 346789999999987655443 48999999999999864 34689999999999887753
No 77
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.37 E-value=0.00045 Score=53.06 Aligned_cols=52 Identities=13% Similarity=0.036 Sum_probs=43.6
Q ss_pred CCCCccccCCCCCCCCCeecC-CCCEeeHhhHHHHHHhc--CCCCCCCCCCCCCC
Q 015475 36 RLPFYCCALTFTPFEDPVCTA-DGSVFELMSITPYIRKY--GKHPVTGTPLKLED 87 (406)
Q Consensus 36 ~lpf~~C~LSl~Pl~~PV~t~-~G~lf~ke~Il~~Ll~~--~~~Pvtg~~l~lkD 87 (406)
......|+|++..|.+||.++ -||+|++.+|..||... ..+|+.+.++...|
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 12 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp SCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 344788999999999999998 79999999999999976 47888877644433
No 78
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.37 E-value=0.00012 Score=56.30 Aligned_cols=56 Identities=18% Similarity=0.333 Sum_probs=44.4
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeE
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 156 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII 156 (406)
..++.|||+...|.+- |.+..|||+|+..||.+.........||+|..++...|.+
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2yur_A 13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDAL 68 (74)
T ss_dssp CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTT
T ss_pred CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcccc
Confidence 4568999999999864 3343399999999999997544346899999998877765
No 79
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.36 E-value=9.9e-05 Score=59.80 Aligned_cols=54 Identities=13% Similarity=0.198 Sum_probs=43.8
Q ss_pred CccccCCCCCCCCCeec-CCCCEeeHhhHHHHHHhcCCCCCCCCCCCCCCccccc
Q 015475 39 FYCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLT 92 (406)
Q Consensus 39 f~~C~LSl~Pl~~PV~t-~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDLi~l~ 92 (406)
...|+|++..+.+||.. +-||.|+..+|..|+.....||+.+.++...+|.+..
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~ 76 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNR 76 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECH
T ss_pred CCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCH
Confidence 56899999999999998 8999999999999998666666666666655555433
No 80
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.35 E-value=0.00025 Score=56.50 Aligned_cols=51 Identities=18% Similarity=0.335 Sum_probs=41.0
Q ss_pred CCccccccccccccCceeEEEEcc-CCeeehHHHHHHHhhccCCccccCCCCCCCC
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKT-TGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~-cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~ 152 (406)
...+.|||+...|.+- |.+ + |||+|+..||.+.........||+|..+|..
T Consensus 11 ~~~~~C~IC~~~~~~p---~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 62 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA---VVI-PCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 62 (92)
T ss_dssp CTTTEETTTTEECSSC---EEC-TTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCC
T ss_pred CcCCCCCCCChhhcCc---eEC-CCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCC
Confidence 4568999999999864 444 6 9999999999988654445789999999843
No 81
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.35 E-value=0.00016 Score=63.65 Aligned_cols=49 Identities=12% Similarity=0.022 Sum_probs=41.9
Q ss_pred CCccccCCCCCCCCCeecCCCCEeeHhhHHHHHHhcC-CCCCCCCCCCCC
Q 015475 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYG-KHPVTGTPLKLE 86 (406)
Q Consensus 38 pf~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~~~-~~Pvtg~~l~lk 86 (406)
....|+||+.+|.+||.++-||.|+..+|..||.... .||+.+.++...
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 3578999999999999999999999999999998643 577777776666
No 82
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.32 E-value=0.0004 Score=52.66 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=43.8
Q ss_pred CCCCccccCCCCCCCCCeecCCCCEeeHhhHHHHHHh---cCCCCCCCCCCCCCCc
Q 015475 36 RLPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRK---YGKHPVTGTPLKLEDL 88 (406)
Q Consensus 36 ~lpf~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~---~~~~Pvtg~~l~lkDL 88 (406)
......|+|++..+.+|+..+-||+|+..+|..|+.. ...+|+.+.++...+|
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred CccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 3457789999999999999999999999999999973 3367777777766654
No 83
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.31 E-value=0.0002 Score=60.43 Aligned_cols=47 Identities=13% Similarity=0.015 Sum_probs=39.7
Q ss_pred CccccCCCCCCCCCeecCCCCEeeHhhHHHHHHhcC-CCCCCCCCCCC
Q 015475 39 FYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYG-KHPVTGTPLKL 85 (406)
Q Consensus 39 f~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~~~-~~Pvtg~~l~l 85 (406)
...|+|++..|.+||.++-||.|+..+|..|+.... .||+.+.++..
T Consensus 52 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 468999999999999999999999999999998443 56666666655
No 84
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.28 E-value=0.00056 Score=53.58 Aligned_cols=57 Identities=12% Similarity=0.208 Sum_probs=48.0
Q ss_pred CCCCCccccCCCCCCCC----CeecCCCCEeeHhhHHHHHHhc---CCCCCCCCCCCCCCcccc
Q 015475 35 KRLPFYCCALTFTPFED----PVCTADGSVFELMSITPYIRKY---GKHPVTGTPLKLEDLIPL 91 (406)
Q Consensus 35 ~~lpf~~C~LSl~Pl~~----PV~t~~G~lf~ke~Il~~Ll~~---~~~Pvtg~~l~lkDLi~l 91 (406)
.......|+|++..+.+ |+..+-||.|+..+|..|+... ..||+-+.++...++..|
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l 74 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQL 74 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTS
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHH
Confidence 34457789999999999 9999999999999999999986 678998888877766443
No 85
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.24 E-value=0.00019 Score=51.47 Aligned_cols=51 Identities=16% Similarity=0.265 Sum_probs=42.2
Q ss_pred CccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCC
Q 015475 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 151 (406)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~ 151 (406)
+.+.|||+...|.+....+.+.+|||+|..++|.+.... ...||+|..++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE--GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH--TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc--CCcCCCCCCcCC
Confidence 467899999999776566777899999999999998653 368999998874
No 86
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.23 E-value=8.2e-05 Score=57.35 Aligned_cols=60 Identities=17% Similarity=0.202 Sum_probs=49.5
Q ss_pred CCCCccccCCCCCCCCCeecCCCCEeeHhhHHHHHHh-------cCCCCCCCCCCCCCCcccccccc
Q 015475 36 RLPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRK-------YGKHPVTGTPLKLEDLIPLTFHK 95 (406)
Q Consensus 36 ~lpf~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~-------~~~~Pvtg~~l~lkDLi~l~f~~ 95 (406)
......|+|++..+.+|+..+-||.|+..+|..|+.. ...||+.+.++...+|.+.....
T Consensus 9 ~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~ 75 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLA 75 (79)
T ss_dssp CCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSC
T ss_pred cccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHH
Confidence 3446789999999999999999999999999999986 45788888888877776655443
No 87
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.23 E-value=0.00032 Score=62.03 Aligned_cols=54 Identities=15% Similarity=0.227 Sum_probs=43.7
Q ss_pred CccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeE
Q 015475 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 156 (406)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII 156 (406)
..+.||||...|.+ -|.+.+|||+|+..||.+.... ....||+|..++...+.+
T Consensus 53 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~l 106 (165)
T 2ckl_B 53 SELMCPICLDMLKN---TMTTKECLHRFCADCIITALRS-GNKECPTCRKKLVSKRSL 106 (165)
T ss_dssp HHHBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHHT-TCCBCTTTCCBCCSGGGE
T ss_pred CCCCCcccChHhhC---cCEeCCCCChhHHHHHHHHHHh-CcCCCCCCCCcCCCcccC
Confidence 46899999999987 3555699999999999998652 256899999999765544
No 88
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.22 E-value=0.00011 Score=56.06 Aligned_cols=57 Identities=14% Similarity=0.092 Sum_probs=47.6
Q ss_pred CCCCCCccccCCCCCCCCCeecCCCCEeeHhhHHHHHHhcCCCCCCCCCCCCCCccc
Q 015475 34 FKRLPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIP 90 (406)
Q Consensus 34 ~~~lpf~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDLi~ 90 (406)
.....-..|+|++..+.+||..+-||+|+..+|..||.....+|+-+.++...+|+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 66 (71)
T 2d8t_A 10 APSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFLDS 66 (71)
T ss_dssp CSSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHSC
T ss_pred ccCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhccC
Confidence 334556789999999999999999999999999999988778888877777665543
No 89
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.22 E-value=0.00019 Score=53.63 Aligned_cols=53 Identities=15% Similarity=0.370 Sum_probs=43.0
Q ss_pred CCccccccccccccCc---eeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCC
Q 015475 98 EGEYHCPVLNKVFTEF---THIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~---t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~ 152 (406)
...+.|||+...|.+. .+.+++.+|||+|+.++|.+.... ...||+|..+|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH--CSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc--CCCCCCCCCccCc
Confidence 4568899999999763 345567799999999999998653 4589999999875
No 90
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.21 E-value=0.00022 Score=55.34 Aligned_cols=56 Identities=16% Similarity=0.300 Sum_probs=44.5
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhc----cCCccccCCCCCCCCCCeEE
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK----TKNWKELLTDEPFTKEDLIT 157 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~----~k~~~c~vc~~~f~~~DII~ 157 (406)
...+.|||+...|.+- + +-+|||+|+..|+.++... .....||+|..++...|++.
T Consensus 17 ~~~~~C~IC~~~~~~p---~-~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~ 76 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP---L-SLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRP 76 (85)
T ss_dssp CCCCCCTTTCSCCSSC---B-CCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCC
T ss_pred cCCCCCCCCCcccCCc---e-eCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCc
Confidence 4568999999999763 2 2389999999999998643 23578999999999877664
No 91
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.21 E-value=0.00022 Score=63.36 Aligned_cols=69 Identities=29% Similarity=0.395 Sum_probs=58.1
Q ss_pred CCCCccccCCCCCCCCCeecCCCCEeeHhhHHHHHHhcC-CCCCCCCCCCCCCccccccccCC--CCccccc
Q 015475 36 RLPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYG-KHPVTGTPLKLEDLIPLTFHKNA--EGEYHCP 104 (406)
Q Consensus 36 ~lpf~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~~~-~~Pvtg~~l~lkDLi~l~f~~n~--~~~~~CP 104 (406)
......|+|++.+|.+||.++-||+|+..+|..||...+ .+|+.+.++...+|++..+..+. .-.+.||
T Consensus 15 ~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~ 86 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCP 86 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECC
T ss_pred CCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcccCCC
Confidence 344789999999999999999999999999999998765 89999999999998887665543 3345676
No 92
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.21 E-value=0.0002 Score=61.72 Aligned_cols=34 Identities=15% Similarity=0.247 Sum_probs=31.0
Q ss_pred ccccCCCCCCCCCeecCCCCEeeHhhHHHHHHhc
Q 015475 40 YCCALTFTPFEDPVCTADGSVFELMSITPYIRKY 73 (406)
Q Consensus 40 ~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~~ 73 (406)
..|+|++.+|.+||+.+-||.|+..+|..|+..+
T Consensus 54 ~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~ 87 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRK 87 (138)
T ss_dssp SBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTC
T ss_pred CCCcccCcccCCceECCCCCCccHHHHHHHHHcC
Confidence 3699999999999999999999999999998643
No 93
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.21 E-value=0.00033 Score=56.66 Aligned_cols=53 Identities=13% Similarity=0.151 Sum_probs=43.4
Q ss_pred CccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeE
Q 015475 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 156 (406)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII 156 (406)
..+.|||+...|.+ -+.+.+|||+|+..|+.+... ....||+|..++...+++
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~~~l~ 73 (99)
T 2y43_A 21 DLLRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLS--YKTQCPTCCVTVTEPDLK 73 (99)
T ss_dssp HHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHT--TCCBCTTTCCBCCGGGCE
T ss_pred CCCCcccCChhhCC---cCEECCCCCHhhHHHHHHHHH--CCCCCCCCCCcCChhhCC
Confidence 46889999999986 244558999999999999875 346899999999876655
No 94
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.20 E-value=0.00035 Score=58.12 Aligned_cols=53 Identities=21% Similarity=0.185 Sum_probs=47.1
Q ss_pred CccccCCCCCCCCCeecCCCCEeeHhhHHHHHHh-cCCCCCCCCCCCCCCcccc
Q 015475 39 FYCCALTFTPFEDPVCTADGSVFELMSITPYIRK-YGKHPVTGTPLKLEDLIPL 91 (406)
Q Consensus 39 f~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~-~~~~Pvtg~~l~lkDLi~l 91 (406)
...|+|++.++.+||.++-||+|+..+|..||.. ...+|+.+.++...+|++.
T Consensus 23 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 76 (116)
T 1rmd_A 23 SISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESP 76 (116)
T ss_dssp HTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCC
T ss_pred CCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhcccc
Confidence 5679999999999999999999999999999997 5678998888888877654
No 95
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.14 E-value=0.00021 Score=54.42 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=42.7
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEE
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~ 157 (406)
...+.|||+...|.+- +.+ +|||+|++.+|.+... ....||+|..++...+++.
T Consensus 13 ~~~~~C~IC~~~~~~~---~~~-~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~~~~~~ 66 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VSL-PCKHVFCYLCVKGASW--LGKRCALCRQEIPEDFLDS 66 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EEE-TTTEEEEHHHHHHCTT--CSSBCSSSCCBCCHHHHSC
T ss_pred CCCCCCccCCcccCCC---EEc-cCCCHHHHHHHHHHHH--CCCcCcCcCchhCHhhccC
Confidence 3568899999999763 333 8999999999998754 3468999999998776543
No 96
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.13 E-value=0.00018 Score=59.07 Aligned_cols=57 Identities=19% Similarity=0.240 Sum_probs=44.7
Q ss_pred CccccccccccccCceeEEEEccCCeeehHHHHHHHhhcc-CCccccCCCCCCCCCCeEEec
Q 015475 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKT-KNWKELLTDEPFTKEDLITIQ 159 (406)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~-k~~~c~vc~~~f~~~DII~Lq 159 (406)
..+.|||+...|.+- + +-+|||+|+..||.+..... ....||+|..++...+++...
T Consensus 20 ~~~~C~IC~~~~~~p---~-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 77 (112)
T 1jm7_A 20 KILECPICLELIKEP---V-STKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQEST 77 (112)
T ss_dssp HHTSCSSSCCCCSSC---C-BCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCC
T ss_pred CCCCCcccChhhcCe---E-ECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccH
Confidence 357899999999763 2 24899999999999987532 235899999999988876533
No 97
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.12 E-value=0.00042 Score=56.52 Aligned_cols=55 Identities=11% Similarity=0.259 Sum_probs=44.9
Q ss_pred CccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEE
Q 015475 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (406)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~ 157 (406)
..+.|||+...|.+ -|.+-+|||+|++.||.+..... ...||+|..+|...+++.
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~l~~ 75 (100)
T 3lrq_A 21 EVFRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQ-RAQCPHCRAPLQLRELVN 75 (100)
T ss_dssp HHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHHHT-CSBCTTTCCBCCGGGCEE
T ss_pred CCCCCccCCccccC---ccccCCCCChhhHHHHHHHHHHC-cCCCCCCCCcCCHHHhHh
Confidence 46889999999976 34447999999999999886532 268999999998887775
No 98
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.12 E-value=0.00035 Score=61.82 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=32.0
Q ss_pred CCccccCCCCCCCCCeec-CCCCEeeHhhHHHHHHh
Q 015475 38 PFYCCALTFTPFEDPVCT-ADGSVFELMSITPYIRK 72 (406)
Q Consensus 38 pf~~C~LSl~Pl~~PV~t-~~G~lf~ke~Il~~Ll~ 72 (406)
....|+||+..|.+||.. +-||+|++.||..||..
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~ 88 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRS 88 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHT
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHh
Confidence 356899999999999998 99999999999999973
No 99
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.12 E-value=0.00074 Score=51.75 Aligned_cols=65 Identities=12% Similarity=0.050 Sum_probs=48.5
Q ss_pred CCCccccccccCC--CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCC
Q 015475 85 LEDLIPLTFHKNA--EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (406)
Q Consensus 85 lkDLi~l~f~~n~--~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~ 152 (406)
++.|....|..+. .....|||+...|.....++. .+|||+|...||.+... .+..||+|..++..
T Consensus 6 i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~-l~C~H~fh~~Ci~~w~~--~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 6 SGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRV-LPCNHEFHAKCVDKWLK--ANRTCPICRADSGP 72 (75)
T ss_dssp CSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEE-ETTTEEEETTHHHHHHH--HCSSCTTTCCCCCC
T ss_pred HhhCCcEEecCccccCCCCCCeECCcccCCCCeEEE-ECCCCHhHHHHHHHHHH--cCCcCcCcCCcCCC
Confidence 4555555565432 456789999999987665554 47999999999999864 34589999988865
No 100
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.11 E-value=0.00072 Score=52.60 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=39.8
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCC
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 151 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~ 151 (406)
...+.|||+...|.+- ++.+|||+|+..||.+... ....||+|..++.
T Consensus 13 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP----VVTKCRHYFCESCALEHFR--ATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE----EECTTSCEEEHHHHHHHHH--HCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe----eEccCCCHhHHHHHHHHHH--CCCcCCCcCcccc
Confidence 3468999999999762 3469999999999999874 3568999999996
No 101
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.10 E-value=0.00063 Score=56.95 Aligned_cols=60 Identities=23% Similarity=0.386 Sum_probs=46.4
Q ss_pred cccCCCCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEE
Q 015475 93 FHKNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (406)
Q Consensus 93 f~~n~~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~ 157 (406)
|...-...+.|||+...|.+- |. -+|||+|+..||.+.... ....||+|..++...+++.
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~p---~~-~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~ 70 (118)
T 3hct_A 11 FDPPLESKYECPICLMALREA---VQ-TPCGHRFCKACIIKSIRD-AGHKCPVDNEILLENQLFP 70 (118)
T ss_dssp BSSCCCGGGBCTTTCSBCSSE---EE-CTTSCEEEHHHHHHHHHH-HCSBCTTTCCBCCGGGCEE
T ss_pred hccCCCCCCCCCcCChhhcCe---EE-CCcCChhhHHHHHHHHhh-CCCCCCCCCCCcCHHhccc
Confidence 444446679999999999763 33 489999999999987643 2348999999999877653
No 102
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.09 E-value=0.00037 Score=58.37 Aligned_cols=60 Identities=15% Similarity=0.334 Sum_probs=48.8
Q ss_pred CCccccccccccccCc---eeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEEec
Q 015475 98 EGEYHCPVLNKVFTEF---THIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQ 159 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~---t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~Lq 159 (406)
.+++.|||+...|.+. .+.+++-+|||+|+.++|.+.... ...||+|..+|...+++.+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~l~~l~ 67 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINHKRYHPIY 67 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT--CSBCTTTCCBCTTTCEEECB
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh--CCCCCCCCCcCccccccccc
Confidence 3568999999999764 344566699999999999998653 34899999999999988764
No 103
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.02 E-value=0.0002 Score=55.16 Aligned_cols=55 Identities=20% Similarity=0.290 Sum_probs=43.2
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhc-----cCCccccCCCCCCCCCCeE
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK-----TKNWKELLTDEPFTKEDLI 156 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~-----~k~~~c~vc~~~f~~~DII 156 (406)
...+.|||+...|.+- +. -+|||+|+..|+.+.... .....||+|..++...|+.
T Consensus 10 ~~~~~C~IC~~~~~~p---~~-l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~ 69 (79)
T 2egp_A 10 QEEVTCPICLELLTEP---LS-LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQ 69 (79)
T ss_dssp CCCCEETTTTEECSSC---CC-CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGG
T ss_pred ccCCCCcCCCcccCCe---eE-CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCC
Confidence 4578999999999763 22 389999999999987543 1256899999999876654
No 104
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=96.99 E-value=0.00095 Score=54.84 Aligned_cols=51 Identities=14% Similarity=0.147 Sum_probs=42.0
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCC
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~ 153 (406)
...+.|||+...|.+ -|.+.+|||+|+..||.+... ....||+|..++...
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFID---ATTIIECLHSFCKTCIVRYLE--TSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHT--SCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhC---cCEeCCCCChhhHHHHHHHHH--hCCcCcCCCcccccc
Confidence 346899999999976 355569999999999999864 346899999998865
No 105
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.97 E-value=0.00083 Score=50.03 Aligned_cols=50 Identities=14% Similarity=0.241 Sum_probs=42.7
Q ss_pred CCCCccccCCCCCCCCC-------eecCCCCEeeHhhHHHHHHhcCCCCCCCCCCCC
Q 015475 36 RLPFYCCALTFTPFEDP-------VCTADGSVFELMSITPYIRKYGKHPVTGTPLKL 85 (406)
Q Consensus 36 ~lpf~~C~LSl~Pl~~P-------V~t~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~l 85 (406)
......|+|++..+.+| ++.+-||+|...+|..||..+..+|+-+.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34577899999999988 778999999999999999988888887776653
No 106
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=96.91 E-value=0.00093 Score=56.25 Aligned_cols=51 Identities=6% Similarity=0.133 Sum_probs=40.9
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCC
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~ 153 (406)
...+.||||...|.+- |.+ +|||+|+..||.+... .....||+|..++...
T Consensus 50 ~~~~~C~IC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~~ 100 (124)
T 3fl2_A 50 EETFQCICCQELVFRP---ITT-VCQHNVCKDCLDRSFR-AQVFSCPACRYDLGRS 100 (124)
T ss_dssp HHHTBCTTTSSBCSSE---EEC-TTSCEEEHHHHHHHHH-TTCCBCTTTCCBCCTT
T ss_pred ccCCCCCcCChHHcCc---EEe-eCCCcccHHHHHHHHh-HCcCCCCCCCccCCCC
Confidence 3468899999999863 333 9999999999998864 3456899999999873
No 107
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=96.91 E-value=0.00049 Score=56.57 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=36.5
Q ss_pred CCccccCCCCCCCCCeec-CCCCEeeHhhHHHHHHhcCCCCCCCCC
Q 015475 38 PFYCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKYGKHPVTGTP 82 (406)
Q Consensus 38 pf~~C~LSl~Pl~~PV~t-~~G~lf~ke~Il~~Ll~~~~~Pvtg~~ 82 (406)
....|+|++..+.+||.. +-||+|+..+|..|+.....||+.+.+
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~ 59 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQ 59 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCB
T ss_pred CcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcc
Confidence 367899999999999997 999999999999999864444444333
No 108
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.85 E-value=0.00091 Score=49.80 Aligned_cols=55 Identities=20% Similarity=0.337 Sum_probs=46.9
Q ss_pred ccccCCCC-CCCCC----eecCCCCEeeHhhHHHHHHhc-CCCCCCCCCCCCCCccccccc
Q 015475 40 YCCALTFT-PFEDP----VCTADGSVFELMSITPYIRKY-GKHPVTGTPLKLEDLIPLTFH 94 (406)
Q Consensus 40 ~~C~LSl~-Pl~~P----V~t~~G~lf~ke~Il~~Ll~~-~~~Pvtg~~l~lkDLi~l~f~ 94 (406)
..|+|++. .+.+| +.++-||+|+..+|..|+... ..+|+-+.++...+|.++-|.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~ 64 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQLFE 64 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEECCC
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceeeccc
Confidence 56999999 88888 467999999999999998754 569999999999998887664
No 109
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.85 E-value=0.0016 Score=49.61 Aligned_cols=52 Identities=12% Similarity=0.022 Sum_probs=41.6
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCC
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~ 152 (406)
.....|||+...|.....++.+ +|||+|...||.+.... ...||+|..++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~~--~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGIC-PCKHAFHRKCLIKWLEV--RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEE-TTTEEEEHHHHHHHHHH--CSBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEc-CCCCEecHHHHHHHHHc--CCcCCCcCccccc
Confidence 3457899999999876655544 89999999999998653 3489999998864
No 110
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=96.84 E-value=0.002 Score=49.51 Aligned_cols=56 Identities=13% Similarity=0.094 Sum_probs=47.1
Q ss_pred CCCCccccCCCCCCCCC---eecCCCCEeeHhhHHHHHHhcCCCCCCCCCCCCCCcccc
Q 015475 36 RLPFYCCALTFTPFEDP---VCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPL 91 (406)
Q Consensus 36 ~lpf~~C~LSl~Pl~~P---V~t~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDLi~l 91 (406)
......|+|++..|.+| +..+-||+|...+|..||..+..||+-+.++...++.+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence 34467899999999876 334889999999999999988899999988888877654
No 111
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.82 E-value=0.0029 Score=46.62 Aligned_cols=37 Identities=22% Similarity=0.238 Sum_probs=33.9
Q ss_pred CCCCccccCCCCCCCCCeecCCCCEeeHhhHHHHHHh
Q 015475 36 RLPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRK 72 (406)
Q Consensus 36 ~lpf~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~ 72 (406)
......|+|++..+.+||..+-||+|++.+|..||..
T Consensus 17 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~ 53 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGET 53 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHH
T ss_pred CccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHc
Confidence 4457789999999999999999999999999999985
No 112
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.81 E-value=0.0016 Score=48.09 Aligned_cols=45 Identities=22% Similarity=0.468 Sum_probs=35.4
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhc-cCCccccCC
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK-TKNWKELLT 146 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~-~k~~~c~vc 146 (406)
...+.|||+...|.+- +.+ +|||+|+..+|.+.... .....||+|
T Consensus 18 ~~~~~C~IC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKP---VTI-DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSC---EEC-TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCe---EEe-CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 5578999999999863 334 99999999999998752 234579987
No 113
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.80 E-value=0.00038 Score=52.54 Aligned_cols=53 Identities=11% Similarity=0.160 Sum_probs=43.2
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEE
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~ 157 (406)
...+.|||+...|.+ ++.+|||+|+..++.+... ....||+|..++...|.+.
T Consensus 13 ~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSD--RHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSC--CCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHH--CcCcCCCcCCcccCCCccc
Confidence 446789999999987 3458999999999998764 4568999999998776543
No 114
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=96.80 E-value=0.0012 Score=57.92 Aligned_cols=51 Identities=6% Similarity=0.081 Sum_probs=41.5
Q ss_pred CccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCC
Q 015475 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED 154 (406)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~D 154 (406)
..+.||||...|.+- | +-+|||+||..||.+.... ....||+|..++...+
T Consensus 77 ~~~~C~IC~~~~~~p---v-~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~ 127 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP---V-TTECFHNVCKDCLQRSFKA-QVFSCPACRHDLGQNY 127 (150)
T ss_dssp HHTBCTTTSSBCSSE---E-ECTTSCEEEHHHHHHHHHT-TCCBCTTTCCBCCTTC
T ss_pred cCCEeecCChhhcCC---E-EcCCCCchhHHHHHHHHHh-CCCcCCCCCccCCCCC
Confidence 468999999999763 3 3599999999999998752 3458999999998764
No 115
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=96.75 E-value=0.00085 Score=48.04 Aligned_cols=51 Identities=12% Similarity=0.008 Sum_probs=41.5
Q ss_pred CccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCC
Q 015475 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 151 (406)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~ 151 (406)
+...|||+...|......+.+..|||+|...++.+... ....||+|..++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~--~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG--SHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT--TCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHH--cCCcCcCCCCEeE
Confidence 45689999999988766666656999999999998864 3568999988764
No 116
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=96.75 E-value=0.0019 Score=48.49 Aligned_cols=52 Identities=13% Similarity=0.122 Sum_probs=41.0
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCC
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~ 152 (406)
.....|||+...|.....++ +.+|||+|...+|.+.... ...||+|..++..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~-~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVR-RLPCMHLFHQVCVDQWLIT--NKKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEE-ECTTSCEEEHHHHHHHHHH--CSBCTTTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEE-EeCCCCHHHHHHHHHHHHc--CCCCcCcCccccC
Confidence 45678999999997655444 4589999999999988653 4579999988864
No 117
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=96.65 E-value=0.0022 Score=51.24 Aligned_cols=52 Identities=12% Similarity=0.067 Sum_probs=41.8
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCC
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~ 152 (406)
..+..|||+...|.....++.+ +|||+|+..||.+... .+..||+|..+|..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~--~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATEL-PCHHYFHKPCVSIWLQ--KSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEE-TTTEEEEHHHHHHHHT--TTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEec-CCCChHHHHHHHHHHH--cCCcCcCcCccCCC
Confidence 3567899999999876655555 6999999999999864 34589999988753
No 118
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=96.65 E-value=0.00081 Score=55.91 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=43.6
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeE
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 156 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII 156 (406)
...+.|||+...|.+- |. -+|||+|+..+|.+.... ....||+|..++...|++
T Consensus 21 ~~~~~C~IC~~~~~~p---~~-~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~ 74 (116)
T 1rmd_A 21 VKSISCQICEHILADP---VE-TSCKHLFCRICILRCLKV-MGSYCPSCRYPCFPTDLE 74 (116)
T ss_dssp HHHTBCTTTCSBCSSE---EE-CTTSCEEEHHHHHHHHHH-TCSBCTTTCCBCCGGGCB
T ss_pred cCCCCCCCCCcHhcCc---EE-cCCCCcccHHHHHHHHhH-CcCcCCCCCCCCCHhhcc
Confidence 3468999999999763 32 499999999999998653 245899999999987766
No 119
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.64 E-value=0.0016 Score=56.03 Aligned_cols=47 Identities=19% Similarity=0.315 Sum_probs=38.0
Q ss_pred ccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCC
Q 015475 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (406)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~ 152 (406)
++.||||...|.+- | +-+|||+|+..||.+... ....||+|..++..
T Consensus 53 ~~~C~iC~~~~~~~---~-~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---V-TLNCAHSFCSYCINEWMK--RKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSE---E-EETTSCEEEHHHHHHHTT--TCSBCTTTCCBCCC
T ss_pred cCCCcccCcccCCc---e-ECCCCCCccHHHHHHHHH--cCCcCCCCCCcCCC
Confidence 57899999999762 3 348999999999998764 34589999998854
No 120
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.52 E-value=0.00041 Score=58.00 Aligned_cols=51 Identities=16% Similarity=0.187 Sum_probs=41.1
Q ss_pred CccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeE
Q 015475 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 156 (406)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII 156 (406)
..+.|||+...|.+- |.+.+|||+|+..||.+... ..||+|..++...|+.
T Consensus 21 ~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~----~~CP~Cr~~~~~~~~~ 71 (117)
T 1jm7_B 21 KLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG----TGCPVCYTPAWIQDLK 71 (117)
T ss_dssp HTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT----TBCSSSCCBCSCSSCC
T ss_pred hCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc----CCCcCCCCcCcccccc
Confidence 468999999999763 44459999999999988752 5799999998765544
No 121
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=96.51 E-value=0.0029 Score=56.00 Aligned_cols=62 Identities=23% Similarity=0.382 Sum_probs=48.2
Q ss_pred cccccCCCCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEE
Q 015475 91 LTFHKNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (406)
Q Consensus 91 l~f~~n~~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~ 157 (406)
+.|...-...|.|||+...|.+- |. -+|||+|+..+|.++... +...||+|..++...+++.
T Consensus 9 ~~~~~~~~~~~~C~IC~~~~~~p---v~-~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~ 70 (170)
T 3hcs_A 9 VEFDPPLESKYECPICLMALREA---VQ-TPCGHRFCKACIIKSIRD-AGHKCPVDNEILLENQLFP 70 (170)
T ss_dssp SEESSCCCGGGBCTTTCSBCSSE---EE-CTTSCEEEHHHHHHHHHH-HCSBCTTTCCBCCGGGCEE
T ss_pred hhhccCCCCCCCCCCCChhhcCc---EE-CCCCCHHHHHHHHHHHHh-CCCCCCCCccCcchhhhhh
Confidence 34555556789999999999763 33 489999999999998643 2348999999998877663
No 122
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=96.48 E-value=0.0027 Score=52.38 Aligned_cols=62 Identities=6% Similarity=0.045 Sum_probs=45.3
Q ss_pred ccccccccccccCce--------------eEEEEccCCeeehHHHHHHHhhc---cCCccccCCCCCCCCCCeEEecCCC
Q 015475 100 EYHCPVLNKVFTEFT--------------HIVAVKTTGNVFCFEAIKELNIK---TKNWKELLTDEPFTKEDLITIQNPN 162 (406)
Q Consensus 100 ~~~CPvt~k~f~~~t--------------~~v~i~~cG~V~s~~ai~~l~~~---~k~~~c~vc~~~f~~~DII~Lqdp~ 162 (406)
+..||||...|.... .++.+.+|||+|...||.+.... .....||+|-..|... .-.|.|.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~--~g~qp~g 102 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK--TGTQPWG 102 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC--SSSCTTS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC--CCCCCCC
Confidence 458999999995532 35667899999999999998632 2356899999999754 3344443
Q ss_pred C
Q 015475 163 A 163 (406)
Q Consensus 163 ~ 163 (406)
.
T Consensus 103 ~ 103 (114)
T 1v87_A 103 K 103 (114)
T ss_dssp S
T ss_pred e
Confidence 3
No 123
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.47 E-value=0.00059 Score=57.05 Aligned_cols=48 Identities=25% Similarity=0.410 Sum_probs=37.5
Q ss_pred CccccCCCCCCCCCeec-CCCCEeeHhhHHHHHHhcCCCCCCCCCCCCCCc
Q 015475 39 FYCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKYGKHPVTGTPLKLEDL 88 (406)
Q Consensus 39 f~~C~LSl~Pl~~PV~t-~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDL 88 (406)
...|+|++..|.+||.. +-||.|+..+|..|+. ..||+.+.++...+|
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~ 70 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDL 70 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSC
T ss_pred CCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccccc
Confidence 67899999999999999 9999999999999975 344444444443333
No 124
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=96.46 E-value=0.0046 Score=44.00 Aligned_cols=45 Identities=9% Similarity=0.182 Sum_probs=38.2
Q ss_pred CccccCCCCCCCC----CeecCCCCEeeHhhHHHHHHhcCCCCCCCCCC
Q 015475 39 FYCCALTFTPFED----PVCTADGSVFELMSITPYIRKYGKHPVTGTPL 83 (406)
Q Consensus 39 f~~C~LSl~Pl~~----PV~t~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l 83 (406)
-..|+|+++.+.+ +++.+-||+|...+|.+||.....+|+-+.++
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 53 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSS
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcC
Confidence 3579999999976 67778999999999999999887888776654
No 125
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=96.42 E-value=0.0013 Score=51.79 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=43.1
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeE
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 156 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII 156 (406)
..++.|||+...|+..-..+..-+|||.|+..|+.++... ....||+|-++|...+++
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~-~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-ENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS-SCSBCTTTCCBCSSCSSC
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc-CCCCCCCCCCccCCCchh
Confidence 4568899999988532111111249999999999998532 457899999999988775
No 126
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=96.42 E-value=0.0037 Score=46.57 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=39.8
Q ss_pred CccccCCCCCCCCC-eecCCCCEeeHhhHHHHHHhcCCCCCCCCCCC
Q 015475 39 FYCCALTFTPFEDP-VCTADGSVFELMSITPYIRKYGKHPVTGTPLK 84 (406)
Q Consensus 39 f~~C~LSl~Pl~~P-V~t~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~ 84 (406)
-..|+|++..+.+| +..+-||+|...+|..|+.....+|+-+.++.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 35799999999998 55699999999999999998888888877664
No 127
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=96.30 E-value=0.0041 Score=46.37 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=39.1
Q ss_pred CccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCC
Q 015475 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 151 (406)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~ 151 (406)
....|||+...|.+. +.+.+|||+|+..++.+... ....||+|..++.
T Consensus 4 ~~~~C~IC~~~~~~~---~~~~~C~H~fc~~Ci~~~~~--~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNY---SMALPCLHAFCYVCITRWIR--QNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSC---EEETTTTEEESTTHHHHHHH--HSCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCC---cEecCCCCeeHHHHHHHHHh--CcCcCcCCChhhH
Confidence 356899999999763 35679999999999998764 3458999999986
No 128
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=96.24 E-value=0.0025 Score=64.56 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=45.3
Q ss_pred CccccCCCCCCCCCeecCCCCEeeHhhHHHHHH-hcCCCCCCCCCCCCCCcccc
Q 015475 39 FYCCALTFTPFEDPVCTADGSVFELMSITPYIR-KYGKHPVTGTPLKLEDLIPL 91 (406)
Q Consensus 39 f~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll-~~~~~Pvtg~~l~lkDLi~l 91 (406)
+..|+||+..+.+||+++.||+||..||..|+. ....||+.+.++...+++.+
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v 385 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVV 385 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEECSC
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCceeEec
Confidence 478999999999999999999999999999998 56678888777776665554
No 129
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.20 E-value=0.0038 Score=44.90 Aligned_cols=36 Identities=19% Similarity=0.251 Sum_probs=32.6
Q ss_pred CCCCccccCCCCCCCCCeecCCCCEeeHhhHHHHHH
Q 015475 36 RLPFYCCALTFTPFEDPVCTADGSVFELMSITPYIR 71 (406)
Q Consensus 36 ~lpf~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll 71 (406)
......|+|++..+.+|+..+-||+|++.+|..|+.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~ 47 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWE 47 (58)
T ss_dssp SCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTT
T ss_pred cccCCCCccCCcccCccEeCCCCCccCHHHHHHHHH
Confidence 345778999999999999999999999999999965
No 130
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=96.14 E-value=0.0068 Score=45.27 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=40.8
Q ss_pred CccccccccccccCceeEEEEccCCee-ehHHHHHHHhhccCCccccCCCCCCCCCCeEE
Q 015475 99 GEYHCPVLNKVFTEFTHIVAVKTTGNV-FCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (406)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~cG~V-~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~ 157 (406)
....|+|+...+.+. .+++.||||+ ++++++.++.. ..+.||+|..++. ++|.
T Consensus 6 ~~~~C~IC~~~~~~~--~~~~~pCgH~~~C~~C~~~~~~--~~~~CPiCR~~i~--~~i~ 59 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG--NIIHGRTGHLVTCFHCARRLKK--AGASCPICKKEIQ--LVIK 59 (63)
T ss_dssp GGSBCTTTSSSBSCE--EEEETTEEEEEECHHHHHHHHH--TTCBCTTTCCBCC--EEEE
T ss_pred cCCCCcccCCcCCCe--EEEecCCCCHhHHHHHHHHHHH--hCCcCCCcCchhh--ceEE
Confidence 356899999887653 3445699998 99999999975 3469999999985 3444
No 131
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=96.10 E-value=0.0036 Score=63.30 Aligned_cols=55 Identities=9% Similarity=0.178 Sum_probs=44.6
Q ss_pred ccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEEec
Q 015475 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQ 159 (406)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~Lq 159 (406)
...||||...+.+ .++-+|||+||..|+.+.... ....||+|-.++...++|.+.
T Consensus 332 ~~~C~ICle~~~~----pv~lpCGH~FC~~Ci~~wl~~-~~~~CP~CR~~i~~~~~i~v~ 386 (389)
T 2y1n_A 332 FQLCKICAENDKD----VKIEPCGHLMCTSCLTSWQES-EGQGCPFCRCEIKGTEPIVVD 386 (389)
T ss_dssp SSBCTTTSSSBCC----EEEETTCCEECHHHHHHHHHH-TCSBCTTTCCBCCEEEECSCC
T ss_pred CCCCCccCcCCCC----eEEeCCCChhhHHHHHHHHhc-CCCCCCCCCCccCCceeEecC
Confidence 3689999988865 455699999999999888541 345899999999988887654
No 132
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=96.07 E-value=0.0069 Score=45.40 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=40.5
Q ss_pred CccccccccccccCceeEEEEccCCee-ehHHHHHHHhhccCCccccCCCCCCCCCCeEEe
Q 015475 99 GEYHCPVLNKVFTEFTHIVAVKTTGNV-FCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 158 (406)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~cG~V-~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~L 158 (406)
.+..|+|+...+.+. ++...||||+ ++++++.++.. .++.||+|..++. ++|.|
T Consensus 7 ~~~~C~IC~~~~~~~--~~~~~pCgH~~~C~~C~~~~~~--~~~~CPiCR~~i~--~~i~i 61 (64)
T 2vje_A 7 AIEPCVICQGRPKNG--CIVHGKTGHLMACFTCAKKLKK--RNKPCPVCRQPIQ--MIVLT 61 (64)
T ss_dssp GGSCCTTTSSSCSCE--EEEETTEEEEEECHHHHHHHHH--TTCCCTTTCCCCC--EEEEE
T ss_pred CcCCCCcCCCCCCCE--EEECCCCCChhhHHHHHHHHHH--cCCcCCCcCcchh--ceEee
Confidence 345799999888653 2223499999 89999999975 4568999999985 45543
No 133
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=96.00 E-value=0.0042 Score=48.66 Aligned_cols=60 Identities=10% Similarity=0.038 Sum_probs=42.4
Q ss_pred ccccccccccccCceeEEEEccCCee-ehHHHHHHHhhccCCccccCCCCCCCCCCeEEecCCCCcchhhhcc
Q 015475 100 EYHCPVLNKVFTEFTHIVAVKTTGNV-FCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQNPNALDTKVTLE 171 (406)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~cG~V-~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~Lqdp~~~~~~~~~~ 171 (406)
...|+|+...+.+ +++.||||+ |+..++..+ +.||+|..++.. .|.+--|.+....++.+
T Consensus 18 ~~~C~IC~~~~~~----~v~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~--~~~i~~p~~~~~~~~~~ 78 (79)
T 2yho_A 18 AMLCMVCCEEEIN----STFCPCGHTVCCESCAAQL------QSCPVCRSRVEH--VQHVYLPTHTSLLNLTV 78 (79)
T ss_dssp HTBCTTTSSSBCC----EEEETTCBCCBCHHHHTTC------SBCTTTCCBCCE--EEECBCTTCCC------
T ss_pred CCEeEEeCcccCc----EEEECCCCHHHHHHHHHhc------CcCCCCCchhhC--eEEEEeCcchhhhhhhc
Confidence 4579999887765 455699999 999999866 489999999975 56666666655544443
No 134
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=95.97 E-value=0.011 Score=44.13 Aligned_cols=48 Identities=13% Similarity=0.190 Sum_probs=38.8
Q ss_pred CCCccccCCCCCCC---CCeecCCCCEeeHhhHHHHHHhcCCCCCCCCCCC
Q 015475 37 LPFYCCALTFTPFE---DPVCTADGSVFELMSITPYIRKYGKHPVTGTPLK 84 (406)
Q Consensus 37 lpf~~C~LSl~Pl~---~PV~t~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~ 84 (406)
..-..|+|++..+. .+++.+-||+|...+|.+||..+..+|+-+.++.
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 34678999999885 4566789999999999999998877887766554
No 135
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.94 E-value=0.0026 Score=48.96 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=36.9
Q ss_pred CccccccccccccCceeEEEEccCCee-ehHHHHHHHhhccCCccccCCCCCCCCC
Q 015475 99 GEYHCPVLNKVFTEFTHIVAVKTTGNV-FCFEAIKELNIKTKNWKELLTDEPFTKE 153 (406)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~cG~V-~s~~ai~~l~~~~k~~~c~vc~~~f~~~ 153 (406)
..+.|||+...+.+ .++.+|||+ |+..++..+ ..||+|..++...
T Consensus 24 ~~~~C~IC~~~~~~----~~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 24 EEKLCKICMDRNIA----IVFVPCGHLVTCKQCAEAV------DKCPMCYTVITFK 69 (75)
T ss_dssp HHHSCSSSCSSCCC----BCCSSSCCCCBCHHHHHHC------SBCTTTCCBCCCC
T ss_pred CCCCCCcCCCCCCC----EEEecCCCHHHHHHHhhCC------CCCccCCceecCc
Confidence 45789999998866 345699999 999999765 3899999999764
No 136
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=95.93 E-value=0.0021 Score=55.87 Aligned_cols=35 Identities=11% Similarity=0.251 Sum_probs=32.4
Q ss_pred CCccccCCCCCCCCCeecCCCCEeeHhhHHHHHHh
Q 015475 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIRK 72 (406)
Q Consensus 38 pf~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~ 72 (406)
.-..|+|++..|.+||.++-||+|+..+|..||..
T Consensus 30 ~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~ 64 (141)
T 3knv_A 30 AKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSS 64 (141)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGG
T ss_pred cCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhc
Confidence 46789999999999999999999999999999964
No 137
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.87 E-value=0.0068 Score=43.51 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=34.7
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhc-cCCccccCC
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK-TKNWKELLT 146 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~-~k~~~c~vc 146 (406)
...+.|||+...|.+- ++-+|||+|+..+|.+.... .....||+|
T Consensus 13 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP----VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC----CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc----EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4568999999999874 23489999999999998432 245678887
No 138
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.87 E-value=0.0072 Score=46.08 Aligned_cols=47 Identities=11% Similarity=0.200 Sum_probs=39.1
Q ss_pred CCccccCCCCCCCCC---eecCCCCEeeHhhHHHHHHhcCCCCCCCCCCC
Q 015475 38 PFYCCALTFTPFEDP---VCTADGSVFELMSITPYIRKYGKHPVTGTPLK 84 (406)
Q Consensus 38 pf~~C~LSl~Pl~~P---V~t~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~ 84 (406)
.-..|+|++..+..+ ++.+-||+|...+|..||..+..||+-+.++.
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 456899999999987 55689999999999999998777777765554
No 139
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.85 E-value=0.0082 Score=45.51 Aligned_cols=47 Identities=13% Similarity=0.182 Sum_probs=39.1
Q ss_pred CCCccccCCCCCCCCCeec---CCCCEeeHhhHHHHHHhcCCCCCCCCCC
Q 015475 37 LPFYCCALTFTPFEDPVCT---ADGSVFELMSITPYIRKYGKHPVTGTPL 83 (406)
Q Consensus 37 lpf~~C~LSl~Pl~~PV~t---~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l 83 (406)
.....|+|++..+.+|... +-||+|...+|.+||..+..+|+-+.++
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~ 62 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPV 62 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccc
Confidence 3467899999999877544 8899999999999999887888876654
No 140
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=95.76 E-value=0.0058 Score=50.29 Aligned_cols=34 Identities=12% Similarity=0.139 Sum_probs=29.5
Q ss_pred CccccCCCCCCCCCe------------------ecCCCCEeeHhhHHHHHHh
Q 015475 39 FYCCALTFTPFEDPV------------------CTADGSVFELMSITPYIRK 72 (406)
Q Consensus 39 f~~C~LSl~Pl~~PV------------------~t~~G~lf~ke~Il~~Ll~ 72 (406)
-..|+|++.+|.+|+ +.+-||+|...+|.+||..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~ 76 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCN 76 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHH
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHc
Confidence 468999999998875 5678999999999999963
No 141
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=95.71 E-value=0.0035 Score=51.90 Aligned_cols=49 Identities=12% Similarity=0.213 Sum_probs=38.9
Q ss_pred CccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCC
Q 015475 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (406)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~ 152 (406)
.++.|||+...|.+- |.+ +|||+|+..||.+.... ....||+|..++..
T Consensus 14 ~~~~C~iC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVEP---VTL-PCNHTLCKPCFQSTVEK-ASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSSC---EEC-TTSCEECHHHHCCCCCT-TTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCce---eEc-CCCCHHhHHHHHHHHhH-CcCCCCCCCcccCc
Confidence 468999999999763 334 99999999999987532 35689999988863
No 142
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=95.68 E-value=0.0093 Score=42.43 Aligned_cols=46 Identities=15% Similarity=0.215 Sum_probs=37.6
Q ss_pred CccccCCCCCCCC---CeecC-CCCEeeHhhHHHHHHhcCCCCCCCCCCC
Q 015475 39 FYCCALTFTPFED---PVCTA-DGSVFELMSITPYIRKYGKHPVTGTPLK 84 (406)
Q Consensus 39 f~~C~LSl~Pl~~---PV~t~-~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~ 84 (406)
-..|+|++..+.+ ++..+ -||+|...+|.+||..+..+|+-+.++.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3579999999987 67665 8999999999999987777777665543
No 143
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=95.66 E-value=0.0062 Score=48.57 Aligned_cols=47 Identities=15% Similarity=0.311 Sum_probs=38.4
Q ss_pred CCccccCCCCCCCC---CeecCCCCEeeHhhHHHHHHhcCCCCCCCCCCC
Q 015475 38 PFYCCALTFTPFED---PVCTADGSVFELMSITPYIRKYGKHPVTGTPLK 84 (406)
Q Consensus 38 pf~~C~LSl~Pl~~---PV~t~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~ 84 (406)
.-..|+|++..+.. ++..+-||+|...+|..||..+..||+.+.++.
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 35679999999887 666789999999999999987777777665543
No 144
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.52 E-value=0.007 Score=47.32 Aligned_cols=50 Identities=12% Similarity=0.217 Sum_probs=39.7
Q ss_pred CCccccCCCCCCCCC--------------eec-CCCCEeeHhhHHHHHHhcCCCCCCCCCCCCCC
Q 015475 38 PFYCCALTFTPFEDP--------------VCT-ADGSVFELMSITPYIRKYGKHPVTGTPLKLED 87 (406)
Q Consensus 38 pf~~C~LSl~Pl~~P--------------V~t-~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkD 87 (406)
.-+.|+|++.+|.+| ++. .-||+|-..+|.+||..+..+|+-+.++...+
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQR 78 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchhh
Confidence 346799999999874 444 58999999999999998888888777665443
No 145
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=95.38 E-value=0.0039 Score=51.59 Aligned_cols=49 Identities=12% Similarity=0.252 Sum_probs=41.1
Q ss_pred CCccccCCCCCCCCCeecCCCCEeeHhhHHHHHHhcCCCCCCCCCCCCCCccccccccCCCCccccccccccccC
Q 015475 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEYHCPVLNKVFTE 112 (406)
Q Consensus 38 pf~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDLi~l~f~~n~~~~~~CPvt~k~f~~ 112 (406)
....|+|++..+.+||..+-||.|+..+|..|+.. +.+.||++...+..
T Consensus 14 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--------------------------~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEK--------------------------ASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCT--------------------------TTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhH--------------------------CcCCCCCCCcccCc
Confidence 35789999999999999999999999999988752 13578888888763
No 146
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.37 E-value=0.007 Score=48.41 Aligned_cols=50 Identities=10% Similarity=0.123 Sum_probs=38.7
Q ss_pred CccccccccccccCceeEEEEccCCeeehHHHHHHHhhc---c---CCccccC--CCCC
Q 015475 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK---T---KNWKELL--TDEP 149 (406)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~---~---k~~~c~v--c~~~ 149 (406)
..+.|||+...|... .++.+.+|||+|+.+|+.+.... . ....||. |...
T Consensus 4 ~~~~C~IC~~~~~~~-~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVE-QMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGG-GEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccc-cceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 468899999998654 44556689999999999988532 1 2468999 9988
No 147
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=95.35 E-value=0.0061 Score=52.94 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=40.8
Q ss_pred CCCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCC
Q 015475 97 AEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (406)
Q Consensus 97 ~~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~ 153 (406)
-..+|.|||+...|.+- |. -+|||+|+..||.+... .....||+|..+....
T Consensus 28 l~~~~~C~IC~~~~~~p---v~-~~CgH~FC~~Ci~~~~~-~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP---FQ-AQCGHRYCSFCLASILS-SGPQNCAACVHEGIYE 79 (141)
T ss_dssp CCGGGBCTTTCSBCSSE---EE-CTTSCEEEHHHHHHHGG-GSCEECHHHHHTTCCC
T ss_pred CCcCcCCCCCChhhcCc---EE-CCCCCccCHHHHHHHHh-cCCCCCCCCCCccccc
Confidence 35689999999999764 33 49999999999999863 3446899998875433
No 148
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.35 E-value=0.0081 Score=46.95 Aligned_cols=51 Identities=10% Similarity=0.079 Sum_probs=37.0
Q ss_pred cccccccccc-----------CceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCC
Q 015475 102 HCPVLNKVFT-----------EFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED 154 (406)
Q Consensus 102 ~CPvt~k~f~-----------~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~D 154 (406)
.|+|+...|. +....+.+-+|||+|..++|.+-... +..||+|-.+|...+
T Consensus 17 ~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 17 TCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ--NNRCPLCQQDWVVQR 78 (81)
T ss_dssp CBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT--CCBCTTTCCBCCEEE
T ss_pred CCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh--CCCCCCcCCCcchhh
Confidence 4666666663 34445666679999999999998642 348999999987544
No 149
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.19 E-value=0.012 Score=44.77 Aligned_cols=52 Identities=12% Similarity=0.178 Sum_probs=40.6
Q ss_pred CCccccccccccccCceeEEEEccCCee-ehHHHHHHHhhccCCccccCCCCCCCCCCeEEecCC
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNV-FCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQNP 161 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V-~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~Lqdp 161 (406)
.....|+|+...+.+ +++.||||+ |++.++..+ ..||+|..++.. +|.|-.|
T Consensus 13 ~~~~~C~IC~~~~~~----~v~~pCgH~~~C~~C~~~~------~~CP~CR~~i~~--~~~i~~~ 65 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN----WVLLPCRHTCLCDGCVKYF------QQCPMCRQFVQE--SFALSGP 65 (68)
T ss_dssp CCSSCCSSSSSSCCC----CEETTTTBCCSCTTHHHHC------SSCTTTCCCCCC--EECCCSS
T ss_pred CCCCCCCCcCcCCCC----EEEECCCChhhhHHHHhcC------CCCCCCCcchhc--eEEeecC
Confidence 345789999887765 667899999 999999965 489999999864 5555443
No 150
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.10 E-value=0.006 Score=45.77 Aligned_cols=49 Identities=10% Similarity=0.082 Sum_probs=38.2
Q ss_pred CCCccccCCCCCCCCCeecCCCCEeeHhhHHHHHHhcCCCCCCCCCCCCC
Q 015475 37 LPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLE 86 (406)
Q Consensus 37 lpf~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lk 86 (406)
.....|+|++..+.+ +..+-||+|...+|..||.....+|+-+.++...
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 346789999999999 8889999999999999987555555554444433
No 151
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=94.95 E-value=0.0079 Score=46.21 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=36.1
Q ss_pred CccccccccccccCceeEEEEccCCee-ehHHHHHHHhhccCCccccCCCCCCCC
Q 015475 99 GEYHCPVLNKVFTEFTHIVAVKTTGNV-FCFEAIKELNIKTKNWKELLTDEPFTK 152 (406)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~cG~V-~s~~ai~~l~~~~k~~~c~vc~~~f~~ 152 (406)
.+..|||+...+.+ .++-+|||+ |+..++..+ ..||+|..++..
T Consensus 23 ~~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIA----IVFVPCGHLVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCC----EEEETTCCBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCC----EEEcCCCChhHHHHhhhcC------ccCCCcCcCccC
Confidence 35789999988865 334499999 999999877 489999999975
No 152
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=94.87 E-value=0.019 Score=47.61 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=37.7
Q ss_pred CccccCCCCCCCCC-----------------ee-cCCCCEeeHhhHHHHHHhcCCCCCCCCCCC
Q 015475 39 FYCCALTFTPFEDP-----------------VC-TADGSVFELMSITPYIRKYGKHPVTGTPLK 84 (406)
Q Consensus 39 f~~C~LSl~Pl~~P-----------------V~-t~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~ 84 (406)
-+.|+|++++|.+| ++ .+-||+|-..+|.+||..+..||+-+.+..
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 46799999999977 33 378999999999999998777887766544
No 153
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.18 E-value=0.0078 Score=43.72 Aligned_cols=46 Identities=7% Similarity=0.058 Sum_probs=36.5
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCC
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~ 152 (406)
...+.|||+...|.+- .+-+|||+|+..++.+ ....||+|..++..
T Consensus 4 ~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~-----~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP----KLLPCLHTLCSGCLEA-----SGMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCC----SCSTTSCCSBTTTCSS-----SSSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCe----EEcCCCCcccHHHHcc-----CCCCCCcCCcEeec
Confidence 3567899999999763 3458999999999876 24589999998864
No 154
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=94.05 E-value=0.049 Score=44.95 Aligned_cols=52 Identities=13% Similarity=0.240 Sum_probs=40.4
Q ss_pred ccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEE
Q 015475 102 HCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (406)
Q Consensus 102 ~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~ 157 (406)
.||.+...|.-..+++ ||+|||+++|+.....+ ++-.||.|.+++.+-+-+.
T Consensus 3 fC~~C~~Pi~iygRmI---PCkHvFCydCa~~~~~~-~~k~Cp~C~~~V~rVe~~~ 54 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMI---PCKHVFCYDCAILHEKK-GDKMCPGCSDPVQRIEQCT 54 (101)
T ss_dssp BCTTTCSBCSEEEEEE---TTCCEEEHHHHHHHHHT-TCCBCTTTCCBCSEEEEEE
T ss_pred ecCccCCCeEEEeeec---cccccHHHHHHHHHHhc-cCCCCcCcCCeeeeeEEec
Confidence 5999999997554443 99999999999988642 3458999999998655543
No 155
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=92.96 E-value=0.081 Score=53.07 Aligned_cols=54 Identities=11% Similarity=0.152 Sum_probs=45.8
Q ss_pred cccccccccccCceeEEEEccCCee--ehHHHHHHHhhccCCccccCCCCCCCCCCeEE
Q 015475 101 YHCPVLNKVFTEFTHIVAVKTTGNV--FCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (406)
Q Consensus 101 ~~CPvt~k~f~~~t~~v~i~~cG~V--~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~ 157 (406)
..||+++..|.-= +=-..|-|+ |..+++-+++.....|+||+|++.+.-+|++.
T Consensus 250 L~CPlS~~ri~~P---vRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~I 305 (371)
T 3i2d_A 250 LQCPISYTRMKYP---SKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAI 305 (371)
T ss_dssp SBCTTTSSBCSSE---EEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEE
T ss_pred ecCCCcccccccc---CcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeE
Confidence 6799999998753 223579987 89999999998888999999999999999886
No 156
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=92.85 E-value=0.016 Score=49.03 Aligned_cols=46 Identities=13% Similarity=0.249 Sum_probs=0.0
Q ss_pred ccccCCCCCCCCCe-----------------e-cCCCCEeeHhhHHHHHHhcCCCCCCCCCCCC
Q 015475 40 YCCALTFTPFEDPV-----------------C-TADGSVFELMSITPYIRKYGKHPVTGTPLKL 85 (406)
Q Consensus 40 ~~C~LSl~Pl~~PV-----------------~-t~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~l 85 (406)
+.|+|++.+|.+|. + .+-||+|...+|.+||..+..||+-+.+..+
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 79999999998753 2 2679999999999999988788877665443
No 157
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=92.68 E-value=0.049 Score=39.36 Aligned_cols=44 Identities=11% Similarity=0.048 Sum_probs=33.2
Q ss_pred CCccccCCCCCCCCCeecCCCCEeeHhhHHHHHHhcCCCCCCCCCCC
Q 015475 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLK 84 (406)
Q Consensus 38 pf~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~ 84 (406)
....|+|++..+.+|+..+-||.|+..+|..| ...+|+-+.++.
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHHHccC---CCCCCcCCcEee
Confidence 35679999999999999999999999998761 234555444433
No 158
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=92.16 E-value=0.041 Score=54.71 Aligned_cols=44 Identities=20% Similarity=0.257 Sum_probs=36.4
Q ss_pred CccccccccccccCceeEEEEccCCee-ehHHHHHHHhhccCCccccCCCCCCCC
Q 015475 99 GEYHCPVLNKVFTEFTHIVAVKTTGNV-FCFEAIKELNIKTKNWKELLTDEPFTK 152 (406)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~cG~V-~s~~ai~~l~~~~k~~~c~vc~~~f~~ 152 (406)
.+..||||...+.+ .|.+ ||||+ ||..|+..+ ..||+|-.++..
T Consensus 294 ~~~~C~IC~~~~~~---~v~l-pCgH~~fC~~C~~~~------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFI-PCGHLVVCQECAPSL------RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEE-TTCCEEECTTTGGGC------SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc---eEEc-CCCChhHhHHHHhcC------CcCCCCCCCccC
Confidence 45789999999865 3444 99999 999999876 489999999974
No 159
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=91.92 E-value=0.11 Score=40.41 Aligned_cols=52 Identities=17% Similarity=0.172 Sum_probs=38.1
Q ss_pred CCccccCCCCCCC--CCeecC--CCCEeeHhhHHHHHHh-cCCCCCCCCCCCCCCcc
Q 015475 38 PFYCCALTFTPFE--DPVCTA--DGSVFELMSITPYIRK-YGKHPVTGTPLKLEDLI 89 (406)
Q Consensus 38 pf~~C~LSl~Pl~--~PV~t~--~G~lf~ke~Il~~Ll~-~~~~Pvtg~~l~lkDLi 89 (406)
.-..|+|++.|+. +++..+ -||.|+..+|..++.. ...+|+-+++....+++
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred cCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 3567999999995 455544 8999999999988642 34677776666666554
No 160
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=91.66 E-value=0.15 Score=50.88 Aligned_cols=54 Identities=22% Similarity=0.242 Sum_probs=45.4
Q ss_pred cccccccccccCceeEEEEccCCee--ehHHHHHHHhhccCCccccCCCCCCCCCCeEE
Q 015475 101 YHCPVLNKVFTEFTHIVAVKTTGNV--FCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (406)
Q Consensus 101 ~~CPvt~k~f~~~t~~v~i~~cG~V--~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~ 157 (406)
..||+++..|.-= +=-..|-|+ |..+++-+++.....|+||+|++++.-+|++.
T Consensus 216 L~CPlS~~ri~~P---~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~I 271 (360)
T 4fo9_A 216 LMCPLGKMRLTIP---CRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLIL 271 (360)
T ss_dssp SBCTTTCSBCSSE---EEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEE
T ss_pred eeCCCccceeccC---CcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEE
Confidence 5799999999643 223479988 99999999998888999999999999999886
No 161
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=91.18 E-value=0.22 Score=36.98 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=39.1
Q ss_pred CccccCCCCCCCCCeec--CCCCE-eeHhhHHHHHHhcCCCCCCCCCC
Q 015475 39 FYCCALTFTPFEDPVCT--ADGSV-FELMSITPYIRKYGKHPVTGTPL 83 (406)
Q Consensus 39 f~~C~LSl~Pl~~PV~t--~~G~l-f~ke~Il~~Ll~~~~~Pvtg~~l 83 (406)
-..|.|++..+.++++. +-||+ |+.+++..|+...+.+|+-+.++
T Consensus 8 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i 55 (64)
T 2vje_A 8 IEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPI 55 (64)
T ss_dssp GSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCC
T ss_pred cCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcch
Confidence 45799999999999987 99999 89999999998777788877665
No 162
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=90.92 E-value=0.16 Score=41.94 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=38.0
Q ss_pred ccccccccccccCc--------------eeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCC
Q 015475 100 EYHCPVLNKVFTEF--------------THIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 151 (406)
Q Consensus 100 ~~~CPvt~k~f~~~--------------t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~ 151 (406)
.-.|+|+...|... --.+++-+|||+|...||.+-.. .+..||+|-.+|.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~--~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK--TRQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT--TCSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH--cCCcCcCCCCcce
Confidence 34688888888653 11355669999999999999854 3568999999885
No 163
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.54 E-value=0.42 Score=37.40 Aligned_cols=49 Identities=10% Similarity=0.117 Sum_probs=37.0
Q ss_pred CCccccCCCCCCC--CCeecCC-----CCEeeHhhHHHHHHhcC--CCCCCCCCCCCC
Q 015475 38 PFYCCALTFTPFE--DPVCTAD-----GSVFELMSITPYIRKYG--KHPVTGTPLKLE 86 (406)
Q Consensus 38 pf~~C~LSl~Pl~--~PV~t~~-----G~lf~ke~Il~~Ll~~~--~~Pvtg~~l~lk 86 (406)
.-..|+|++..+. +|++.+- +|.|-.++|.+||..++ .||+-+.++.+.
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 3578999998874 5776543 59999999999999875 677766655543
No 164
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=90.04 E-value=0.26 Score=36.50 Aligned_cols=45 Identities=11% Similarity=0.093 Sum_probs=37.9
Q ss_pred CccccCCCCCCCCCeec--CCCCE-eeHhhHHHHHHhcCCCCCCCCCC
Q 015475 39 FYCCALTFTPFEDPVCT--ADGSV-FELMSITPYIRKYGKHPVTGTPL 83 (406)
Q Consensus 39 f~~C~LSl~Pl~~PV~t--~~G~l-f~ke~Il~~Ll~~~~~Pvtg~~l 83 (406)
-..|.|++....++++. +-||+ |+.+++..+....+.+|+-+.++
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i 54 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEI 54 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBC
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchh
Confidence 45799999999999887 99999 99999999887666777776665
No 165
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.80 E-value=0.39 Score=37.59 Aligned_cols=55 Identities=7% Similarity=0.029 Sum_probs=42.7
Q ss_pred CCccccccccccccCceeEEEEccCC-----eeehHHHHHHHhhccCCccccCCCCCCCCCC
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTG-----NVFCFEAIKELNIKTKNWKELLTDEPFTKED 154 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG-----~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~D 154 (406)
...-.|+|+..+|.....+ +.||+ |.|-.+||++-........||+|..+|.-+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l--~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL--ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE--ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCee--EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 3456899999999765554 47886 9999999999865444578999999997543
No 166
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=88.72 E-value=0.17 Score=38.52 Aligned_cols=31 Identities=10% Similarity=-0.041 Sum_probs=28.4
Q ss_pred CccccCCCCCCCCCeecCCCCE-eeHhhHHHH
Q 015475 39 FYCCALTFTPFEDPVCTADGSV-FELMSITPY 69 (406)
Q Consensus 39 f~~C~LSl~Pl~~PV~t~~G~l-f~ke~Il~~ 69 (406)
...|+|++..+.+||..+-||+ |+..+|..|
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~ 55 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV 55 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC
Confidence 4579999999999999999999 999998876
No 167
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.56 E-value=0.45 Score=36.10 Aligned_cols=29 Identities=10% Similarity=-0.035 Sum_probs=26.6
Q ss_pred CccccCCCCCCCCCeecCCCCE-eeHhhHH
Q 015475 39 FYCCALTFTPFEDPVCTADGSV-FELMSIT 67 (406)
Q Consensus 39 f~~C~LSl~Pl~~PV~t~~G~l-f~ke~Il 67 (406)
...|+|++..+.+||..+-||+ |+..++.
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~ 54 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAE 54 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHH
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhh
Confidence 4579999999999999999999 9999983
No 168
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=86.90 E-value=0.42 Score=47.91 Aligned_cols=49 Identities=14% Similarity=0.263 Sum_probs=40.3
Q ss_pred CccccCCCCCCCCCeec-CCCCE--eeHhhHHHHHHhcCCCCCCCCCCCCCCccccccccCCCCccccccccccccC
Q 015475 39 FYCCALTFTPFEDPVCT-ADGSV--FELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEYHCPVLNKVFTE 112 (406)
Q Consensus 39 f~~C~LSl~Pl~~PV~t-~~G~l--f~ke~Il~~Ll~~~~~Pvtg~~l~lkDLi~l~f~~n~~~~~~CPvt~k~f~~ 112 (406)
...|+||+.++..|+=. ..-|+ ||.+++|++... .+.|.||||.+.+.-
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~-------------------------~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQ-------------------------IPTWQCPVCQIDIAL 300 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHH-------------------------SCCCBCTTTCCBCCG
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhc-------------------------CCceeCCCCCcccCH
Confidence 46899999999999987 56677 999999998653 357999999887754
No 169
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=85.45 E-value=0.85 Score=37.46 Aligned_cols=54 Identities=19% Similarity=0.357 Sum_probs=43.9
Q ss_pred CCCccccCCCCCCCCCeec--CC----CCEeeHhhHHHHHHhcCCCCCCCCCCCCCCccc
Q 015475 37 LPFYCCALTFTPFEDPVCT--AD----GSVFELMSITPYIRKYGKHPVTGTPLKLEDLIP 90 (406)
Q Consensus 37 lpf~~C~LSl~Pl~~PV~t--~~----G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDLi~ 90 (406)
.....|+|+|..-+.=|.- .. =.|||++++.+.+.....+|++++|++..-+|.
T Consensus 25 ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~~~HPLSREpit~sMIv~ 84 (102)
T 2kkx_A 25 LEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEGLPHPLTREPITASIIVK 84 (102)
T ss_dssp TGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHTCCCTTTCCCCCTTTEEC
T ss_pred HHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcCCCCCCccCCCCHhhEec
Confidence 3478899999887765543 11 259999999999999999999999999987764
No 170
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=83.88 E-value=0.21 Score=42.16 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=0.0
Q ss_pred cccccccccccCce--------------eEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCC
Q 015475 101 YHCPVLNKVFTEFT--------------HIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (406)
Q Consensus 101 ~~CPvt~k~f~~~t--------------~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~ 152 (406)
=.|+|+...|.+.- -.+++-+|||+|...||.+-.. .+..||+|..+|..
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~--~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK--TRQVCPLDNREWEF 112 (117)
T ss_dssp ------------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH--cCCcCCCCCCeeee
Confidence 37999998886421 1234458999999999998653 24589999998753
No 171
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.06 E-value=1.3 Score=34.35 Aligned_cols=49 Identities=6% Similarity=0.077 Sum_probs=38.2
Q ss_pred cccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCC
Q 015475 101 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (406)
Q Consensus 101 ~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~ 152 (406)
-.|+|++..|...... ..|||.|-..||.+.-.....-.||+|..++.-
T Consensus 16 ~~C~IC~~~i~~g~~C---~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 16 KICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp CBCSSSCCBCSSSEEC---SSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CcCcchhhHcccCCcc---CCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 4699999999865322 399999999999988643333689999998873
No 172
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=82.54 E-value=0.91 Score=45.35 Aligned_cols=48 Identities=19% Similarity=0.256 Sum_probs=38.7
Q ss_pred CccccCCCCCCCCCeec-CCCCE--eeHhhHHHHHHhcCCCCCCCCCCCCCCccccccccCCCCcccccccccccc
Q 015475 39 FYCCALTFTPFEDPVCT-ADGSV--FELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEYHCPVLNKVFT 111 (406)
Q Consensus 39 f~~C~LSl~Pl~~PV~t-~~G~l--f~ke~Il~~Ll~~~~~Pvtg~~l~lkDLi~l~f~~n~~~~~~CPvt~k~f~ 111 (406)
...|+||+.++..|+=. ..-|+ ||.+++|+.... .+.|.||||.+.+.
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~-------------------------~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEK-------------------------KPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHH-------------------------SCCCBCTTTCSBCC
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhh-------------------------CCCeECCCCCcccC
Confidence 45799999999999886 55677 999999998764 23688888887765
No 173
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=82.36 E-value=0.89 Score=35.85 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=30.0
Q ss_pred CccccCCCCCCCCCeec---CCCCEeeHhhHHHHHHh
Q 015475 39 FYCCALTFTPFEDPVCT---ADGSVFELMSITPYIRK 72 (406)
Q Consensus 39 f~~C~LSl~Pl~~PV~t---~~G~lf~ke~Il~~Ll~ 72 (406)
...|+|++..+..|++. +-||.|++++|..|+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~ 41 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVEL 41 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHH
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHH
Confidence 45799999999999764 68999999999999985
No 174
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=80.89 E-value=1.4 Score=49.11 Aligned_cols=54 Identities=13% Similarity=0.218 Sum_probs=44.9
Q ss_pred CCccccccccccccCceeEEEEccCC-eeehHHHHHHHhhccCCccccCCCCCCCCCCeEE
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTG-NVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG-~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~ 157 (406)
..+|+|||+...|.+ -++-++| ..|-..+|++--.. +..||++..|++..++|+
T Consensus 889 P~~F~cPIs~~lM~D----PVilpsG~~TydR~~I~~wl~~--~~tdP~Tr~~L~~~~liP 943 (968)
T 3m62_A 889 PDEFLDPLMYTIMKD----PVILPASKMNIDRSTIKAHLLS--DSTDPFNRMPLKLEDVTP 943 (968)
T ss_dssp CGGGBCTTTCSBCSS----EEECTTTCCEEEHHHHHHHHTT--CCBCTTTCCBCCGGGCEE
T ss_pred cHHhCCcchhhHHhC----CeEcCCCCEEECHHHHHHHHhc--CCCCCCCCCCCCcccccc
Confidence 357999999999998 3456887 68999999997643 558999999999988885
No 175
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=80.73 E-value=0.57 Score=46.47 Aligned_cols=31 Identities=10% Similarity=0.010 Sum_probs=28.2
Q ss_pred CccccCCCCCCCCCeecCCCCE-eeHhhHHHH
Q 015475 39 FYCCALTFTPFEDPVCTADGSV-FELMSITPY 69 (406)
Q Consensus 39 f~~C~LSl~Pl~~PV~t~~G~l-f~ke~Il~~ 69 (406)
-..|+||+..+.+||..+-||+ ||..||..|
T Consensus 295 ~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~ 326 (345)
T 3t6p_A 295 ERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL 326 (345)
T ss_dssp TCBCTTTSSSBCCEEEETTCCEEECTTTGGGC
T ss_pred CCCCCccCCcCCceEEcCCCChhHhHHHHhcC
Confidence 4689999999999999999999 999998754
No 176
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.87 E-value=4.6 Score=30.09 Aligned_cols=43 Identities=7% Similarity=-0.096 Sum_probs=33.4
Q ss_pred CCCCccccCCCCCCCCCeecCCCCE-eeHhhHHHHHHhcCCCCCCCCC
Q 015475 36 RLPFYCCALTFTPFEDPVCTADGSV-FELMSITPYIRKYGKHPVTGTP 82 (406)
Q Consensus 36 ~lpf~~C~LSl~Pl~~PV~t~~G~l-f~ke~Il~~Ll~~~~~Pvtg~~ 82 (406)
+.....|.|++....++|..+-||+ |+..++.. ...+|+-+.+
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~ 55 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQF 55 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCC
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcc
Confidence 3447789999999999999999999 99999872 2445544433
No 177
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=72.35 E-value=1.2 Score=31.96 Aligned_cols=42 Identities=17% Similarity=0.423 Sum_probs=28.8
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCC
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED 154 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~D 154 (406)
+..|.||++++.|.... .+..+....+.+.|.+|+..|...+
T Consensus 12 ~k~~~C~~C~k~F~~~~---------------~l~~~H~~~k~~~C~~C~k~f~~~~ 53 (62)
T 1vd4_A 12 RASFKCPVCSSTFTDLE---------------ANQLFDPMTGTFRCTFCHTEVEEDE 53 (62)
T ss_dssp SSEEECSSSCCEEEHHH---------------HHHHEETTTTEEBCSSSCCBCEECT
T ss_pred CCCccCCCCCchhccHH---------------HhHhhcCCCCCEECCCCCCccccCc
Confidence 45699999999996532 2222322346789999999997654
No 178
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=70.81 E-value=0.87 Score=33.32 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=13.6
Q ss_pred cCCccccCCCCCCCCCCeEEe
Q 015475 138 TKNWKELLTDEPFTKEDLITI 158 (406)
Q Consensus 138 ~k~~~c~vc~~~f~~~DII~L 158 (406)
+.+|.||+|+.+ +++.+.+
T Consensus 34 P~dw~CP~Cg~~--K~~F~~~ 52 (54)
T 4rxn_A 34 PDDWVCPLCGVG--KDEFEEV 52 (54)
T ss_dssp CTTCBCTTTCCB--GGGEEEC
T ss_pred CCCCcCcCCCCc--HHHceEc
Confidence 468999999986 4455443
No 179
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=70.39 E-value=4.7 Score=33.27 Aligned_cols=92 Identities=12% Similarity=0.180 Sum_probs=63.1
Q ss_pred CccccCCCCCCC---CCeecCCCCEeeHhhHHHHHHhcCCCCCCCCCCCCCC-ccc---cccccCCCCcccccccccccc
Q 015475 39 FYCCALTFTPFE---DPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLED-LIP---LTFHKNAEGEYHCPVLNKVFT 111 (406)
Q Consensus 39 f~~C~LSl~Pl~---~PV~t~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkD-Li~---l~f~~n~~~~~~CPvt~k~f~ 111 (406)
-+.|..+..||. .+....+|.+|++....+..-..+++..-++++...+ ++. -.|+. .-|.|-.+.+.|.
T Consensus 29 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e~~~~a~~~~~H~---~CF~C~~C~~~L~ 105 (131)
T 2xjy_A 29 CLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHL---ECFKCAACQKHFC 105 (131)
T ss_dssp TCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTSEEEEETTEEEEG---GGCBCTTTCCBCC
T ss_pred HcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccceeEeeCCceECc---cCcccCCCCCCCC
Confidence 467888999995 4677799999999987765433235777777766543 222 12332 2478999999996
Q ss_pred CceeEEEEccCCeeehHHHHHHHh
Q 015475 112 EFTHIVAVKTTGNVFCFEAIKELN 135 (406)
Q Consensus 112 ~~t~~v~i~~cG~V~s~~ai~~l~ 135 (406)
....++.. .|.+|+..+..++-
T Consensus 106 ~g~~f~~~--~~~~~C~~c~~~~~ 127 (131)
T 2xjy_A 106 VGDRYLLI--NSDIVCEQDIYEWT 127 (131)
T ss_dssp TTCEEEEE--TTEEEEGGGHHHHH
T ss_pred CCCEEEEE--CCEEEcHHHHHHHh
Confidence 55555433 69999988887764
No 180
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=69.01 E-value=13 Score=32.61 Aligned_cols=91 Identities=10% Similarity=0.186 Sum_probs=61.8
Q ss_pred CccccCCCCCCCCCeecCCCCEeeHhhHHHHHHhcCCCCCCCCCCCCCCcc--c--cccccCCCCccccccccccccCce
Q 015475 39 FYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLI--P--LTFHKNAEGEYHCPVLNKVFTEFT 114 (406)
Q Consensus 39 f~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDLi--~--l~f~~n~~~~~~CPvt~k~f~~~t 114 (406)
-+.|..+..||..-....+|.+|++.+...-+. .++..-++++...+++ . -.|+. .-|.|-.+.+.|....
T Consensus 87 CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~--~kC~~C~~~I~~~~~v~~a~~~~~H~---~CF~C~~C~~~L~~g~ 161 (182)
T 2jtn_A 87 CLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG--TKCAACQLGIPPTQVVRRAQDFVYHL---HCFACVVCKRQLATGD 161 (182)
T ss_dssp TTSCTTTCCCCSSCCEEETTEEECHHHHHHTTS--CCCTTTCCCCCSSCCCCEETTEECCT---TTCCCTTTCCCCCTTC
T ss_pred cCccCCCCCccCCCceeECCEeeecCccccccc--cccccCCCccCCCceEEecCCCCEEe---CCCcCCCCCCCCCCCC
Confidence 357888888887644568999999887654321 3566666766655432 1 22333 3588999999997655
Q ss_pred eEEEEccCCeeehHHHHHHHh
Q 015475 115 HIVAVKTTGNVFCFEAIKELN 135 (406)
Q Consensus 115 ~~v~i~~cG~V~s~~ai~~l~ 135 (406)
.++ +..-|.+|+..+..++.
T Consensus 162 ~f~-~~~~g~~yC~~cy~~~~ 181 (182)
T 2jtn_A 162 EFY-LMEDSRLVCKADYETAK 181 (182)
T ss_dssp EEE-ECTTSCEECHHHHHHHT
T ss_pred ceE-EccCCEEECHHHHHHhh
Confidence 544 44689999999998874
No 181
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=68.83 E-value=2.1 Score=32.97 Aligned_cols=31 Identities=6% Similarity=-0.034 Sum_probs=27.7
Q ss_pred CccccCCCCCCCCCeecCCCCE-eeHhhHHHH
Q 015475 39 FYCCALTFTPFEDPVCTADGSV-FELMSITPY 69 (406)
Q Consensus 39 f~~C~LSl~Pl~~PV~t~~G~l-f~ke~Il~~ 69 (406)
...|.|++..+.+||..+-||+ |+..++..+
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~ 49 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQL 49 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhc
Confidence 4579999999999999999999 999998754
No 182
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=67.47 E-value=4.9 Score=35.27 Aligned_cols=33 Identities=9% Similarity=0.172 Sum_probs=28.5
Q ss_pred ccEEEEEecceeEEEEEcCCCChhHHHHHHHHH
Q 015475 348 KGYVQLHTTHGDLNIELHCDITPRSCENFITLC 380 (406)
Q Consensus 348 ~~~v~l~T~~G~i~ieL~~d~aP~t~~NF~~L~ 380 (406)
...++|.-....+.++|+.+.||+||..|+.+-
T Consensus 29 ~~~I~i~~~~~~~~a~L~D~~aP~Ta~~f~~~L 61 (153)
T 2nnz_A 29 EMRLRIRFESAECEVELYEEWAPETVRAIADAL 61 (153)
T ss_dssp CCCEEEEETTEEEEECCCTTSCHHHHHHHHHTC
T ss_pred CeEEEEEECCEEEEEEEcCCCCHHHHHHHHHhC
Confidence 456788878888999999999999999999864
No 183
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=67.18 E-value=21 Score=30.83 Aligned_cols=92 Identities=10% Similarity=0.183 Sum_probs=64.9
Q ss_pred CccccCCCCCCCCCeecCCCCEeeHhhHHHHHHhcCCCCCCCCCCCCCCcc----ccccccCCCCccccccccccccCce
Q 015475 39 FYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLI----PLTFHKNAEGEYHCPVLNKVFTEFT 114 (406)
Q Consensus 39 f~~C~LSl~Pl~~PV~t~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDLi----~l~f~~n~~~~~~CPvt~k~f~~~t 114 (406)
-+.|..+..||..-....+|.+|++.+...-.. .++..-++++...+++ ...|+.+ -|.|-.+.+.|....
T Consensus 33 CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~--~~C~~C~~~I~~~~~v~~a~~~~~H~~---CF~C~~C~~~L~~g~ 107 (169)
T 2rgt_A 33 CLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG--TKCAACQLGIPPTQVVRRAQDFVYHLH---CFACVVCKRQLATGD 107 (169)
T ss_dssp TSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS--CBCTTTCCBCCTTSEEEEETTEEEEGG---GCBCTTTCCBCCTTC
T ss_pred cCccCCCCCcCCCCCcccCCeeeeccccccccc--ccccccccccCCCcEEEEcCCceEeeC---CCcCCCCCCCCCCCC
Confidence 467888999988654568999999988765432 3566667777655543 1223332 578999999997555
Q ss_pred eEEEEccCCeeehHHHHHHHhh
Q 015475 115 HIVAVKTTGNVFCFEAIKELNI 136 (406)
Q Consensus 115 ~~v~i~~cG~V~s~~ai~~l~~ 136 (406)
.+. +...|.+|+..+..++..
T Consensus 108 ~f~-~~~~g~~~C~~c~~~~~~ 128 (169)
T 2rgt_A 108 EFY-LMEDSRLVCKADYETAKQ 128 (169)
T ss_dssp EEE-ECTTSCEEEHHHHHHHHH
T ss_pred ceE-EccCCeEECHHHHHHHhh
Confidence 543 456899999999998864
No 184
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=63.52 E-value=22 Score=31.37 Aligned_cols=102 Identities=12% Similarity=0.223 Sum_probs=63.9
Q ss_pred CCccccCCCCCCCCC-eecCCCCEeeHhhHHHHHHhcC------------------------------------------
Q 015475 38 PFYCCALTFTPFEDP-VCTADGSVFELMSITPYIRKYG------------------------------------------ 74 (406)
Q Consensus 38 pf~~C~LSl~Pl~~P-V~t~~G~lf~ke~Il~~Ll~~~------------------------------------------ 74 (406)
.-+.|..+..||..- +...+|.+|++.+..+......
T Consensus 33 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 112 (192)
T 1b8t_A 33 SCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKV 112 (192)
T ss_dssp TTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_pred CCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCCCcccccccccccccCCCCcCcccccccc
Confidence 346788899998864 5568999999998877654321
Q ss_pred ----CCCCCCCCCCCCCcccc---ccccCCCCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCC
Q 015475 75 ----KHPVTGTPLKLEDLIPL---TFHKNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTD 147 (406)
Q Consensus 75 ----~~Pvtg~~l~lkDLi~l---~f~~n~~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~ 147 (406)
.++.-++++...++|.. .|+ ..=|.|-.+.+.|.+.. ++ ...|.+|+..+..++- ..+|..|+
T Consensus 113 ~~~~~C~~C~~~I~~~~~v~a~~~~~H---~~CF~C~~C~~~L~~~~-~~--~~~g~~yC~~cy~~~f----~~kc~~C~ 182 (192)
T 1b8t_A 113 GGSDGCPRCGQAVYAAEKVIGAGKSWH---KSCFRCAKCGKSLESTT-LA--DKDGEIYCKGCYAKNF----GPKGFGFG 182 (192)
T ss_dssp CCCEECTTTSCEECSSSCEEETTEEEC---TTTCBCTTTCCBCCSSS-EE--EETTEEEEHHHHHHHT----CCCCCCCC
T ss_pred CCCCcCCCCCCEecCcEEEecCCCccc---hhcCCccccCCCCCCCc-cc--ccCCEEeCHHHHHHhc----CCcCCCCC
Confidence 02222333332222211 111 22467888888887643 33 4678999999988874 23688888
Q ss_pred CC
Q 015475 148 EP 149 (406)
Q Consensus 148 ~~ 149 (406)
++
T Consensus 183 ~~ 184 (192)
T 1b8t_A 183 QG 184 (192)
T ss_dssp CC
T ss_pred Cc
Confidence 76
No 185
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=62.63 E-value=5.5 Score=37.24 Aligned_cols=58 Identities=9% Similarity=0.136 Sum_probs=42.9
Q ss_pred ccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEEecCC
Q 015475 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQNP 161 (406)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~Lqdp 161 (406)
--.|.+|....+..... ..||+.|-..|+........+..||.|+.++.-. +..+.+|
T Consensus 180 i~~C~iC~~iv~~g~~C---~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~-~~~~~~~ 237 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE-IPKVFDP 237 (238)
T ss_dssp CCBCTTTCSBCSSCEEC---SSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC-CCCCCCC
T ss_pred CCcCcchhhHHhCCccc---CccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC-CCCCCCC
Confidence 34699999998864222 2499999999999986544456899999999765 4445444
No 186
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=61.61 E-value=1.6 Score=30.84 Aligned_cols=12 Identities=8% Similarity=0.246 Sum_probs=10.2
Q ss_pred cCCccccCCCCC
Q 015475 138 TKNWKELLTDEP 149 (406)
Q Consensus 138 ~k~~~c~vc~~~ 149 (406)
+.+|+||+|+.+
T Consensus 28 P~dw~CP~Cg~~ 39 (46)
T 6rxn_A 28 PDDWCCPVCGVS 39 (46)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCcCCCCc
Confidence 568999999975
No 187
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=61.31 E-value=0.85 Score=36.21 Aligned_cols=39 Identities=36% Similarity=0.572 Sum_probs=26.4
Q ss_pred CCCCCCCCCCCCCccccccccCC----------------CCccccccccccccCc
Q 015475 75 KHPVTGTPLKLEDLIPLTFHKNA----------------EGEYHCPVLNKVFTEF 113 (406)
Q Consensus 75 ~~Pvtg~~l~lkDLi~l~f~~n~----------------~~~~~CPvt~k~f~~~ 113 (406)
+||+.|.+|...+||.--+.... .--|.||+|+.+|-+.
T Consensus 10 ~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG~ 64 (95)
T 2k5c_A 10 KCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYGK 64 (95)
T ss_dssp ECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEETT
T ss_pred cCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhcc
Confidence 68999999999888876555432 1125577777777553
No 188
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=59.29 E-value=1.7 Score=31.76 Aligned_cols=18 Identities=17% Similarity=0.097 Sum_probs=12.8
Q ss_pred cCCccccCCCCCCCCCCeEE
Q 015475 138 TKNWKELLTDEPFTKEDLIT 157 (406)
Q Consensus 138 ~k~~~c~vc~~~f~~~DII~ 157 (406)
+.+|.||+|+.+ +++.+.
T Consensus 34 P~dw~CP~Cga~--K~~F~~ 51 (55)
T 2v3b_B 34 PADWVCPDCGVG--KIDFEM 51 (55)
T ss_dssp CTTCCCTTTCCC--GGGEEE
T ss_pred CCCCcCCCCCCC--HHHcee
Confidence 468999999975 344443
No 189
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=58.87 E-value=1.8 Score=31.26 Aligned_cols=12 Identities=8% Similarity=0.365 Sum_probs=10.2
Q ss_pred cCCccccCCCCC
Q 015475 138 TKNWKELLTDEP 149 (406)
Q Consensus 138 ~k~~~c~vc~~~ 149 (406)
+.+|.||+|+.+
T Consensus 34 P~dw~CP~Cg~~ 45 (52)
T 1e8j_A 34 PDDWACPVCGAS 45 (52)
T ss_dssp CTTCCCSSSCCC
T ss_pred CCCCcCCCCCCc
Confidence 468999999975
No 190
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=57.95 E-value=1.7 Score=34.43 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=13.8
Q ss_pred cCCccccCCCCCCCCCCeEEe
Q 015475 138 TKNWKELLTDEPFTKEDLITI 158 (406)
Q Consensus 138 ~k~~~c~vc~~~f~~~DII~L 158 (406)
+.+|.||+|+.+ +++.+.|
T Consensus 58 PddW~CPvCga~--K~~F~~i 76 (81)
T 2kn9_A 58 PDDWSCPDCGAA--KSDFEMV 76 (81)
T ss_dssp CTTCCCTTTCCC--GGGEEEE
T ss_pred CCCCcCCCCCCC--HHHcEEc
Confidence 468999999984 4555544
No 191
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.98 E-value=1.3 Score=31.57 Aligned_cols=39 Identities=10% Similarity=0.054 Sum_probs=29.8
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCe
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDL 155 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DI 155 (406)
...|.|+++++.|.....+.. .+.+.|.+|+..|....-
T Consensus 16 ~~~~~C~~C~k~f~~~~~l~~-------------------~~~~~C~~C~~~f~~~~~ 54 (73)
T 2ctu_A 16 DRSQKCSKCGIIFIRRSTLSR-------------------RKTPMCEKCRKDSCQEAA 54 (73)
T ss_dssp CSEEECSSSCCEEECCCCCCC-------------------SSSCCCHHHHHTCSCCCS
T ss_pred CCCeeCCcccchhCCHHHhCc-------------------CCCCCCCCCChhhcCHHH
Confidence 456999999999987655432 357899999999976543
No 192
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=56.91 E-value=1.8 Score=31.32 Aligned_cols=12 Identities=25% Similarity=0.589 Sum_probs=10.3
Q ss_pred cCCccccCCCCC
Q 015475 138 TKNWKELLTDEP 149 (406)
Q Consensus 138 ~k~~~c~vc~~~ 149 (406)
+.+|.||+|+.+
T Consensus 33 P~dw~CP~Cg~~ 44 (52)
T 1yk4_A 33 PDDWVCPLCGAP 44 (52)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCCCCCCC
Confidence 478999999975
No 193
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=56.66 E-value=2.2 Score=34.18 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=13.6
Q ss_pred cCCccccCCCCCCCCCCeEEe
Q 015475 138 TKNWKELLTDEPFTKEDLITI 158 (406)
Q Consensus 138 ~k~~~c~vc~~~f~~~DII~L 158 (406)
+.+|.||+|+.+ +++.+.+
T Consensus 66 PddW~CPvCga~--K~~F~~i 84 (87)
T 1s24_A 66 PDDWCCPDCGAT--KEDYVLY 84 (87)
T ss_dssp CTTCCCSSSCCC--GGGEEEC
T ss_pred CCCCCCCCCCCC--HHHhhhc
Confidence 468999999974 4455544
No 194
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.55 E-value=18 Score=27.74 Aligned_cols=46 Identities=11% Similarity=0.169 Sum_probs=36.6
Q ss_pred CccccCCCCCCCCCeec-CCCCEeeHhhHHHHHHhc--CCCCCCCCCCC
Q 015475 39 FYCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKY--GKHPVTGTPLK 84 (406)
Q Consensus 39 f~~C~LSl~Pl~~PV~t-~~G~lf~ke~Il~~Ll~~--~~~Pvtg~~l~ 84 (406)
...|+|+...+..=+-+ .-|+.|-..+|..||..+ .+||+-+.+..
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 67899999998743333 679999999999999877 67888765543
No 195
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=55.21 E-value=2.2 Score=32.71 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=14.1
Q ss_pred cCCccccCCCCCCCCCCeEEe
Q 015475 138 TKNWKELLTDEPFTKEDLITI 158 (406)
Q Consensus 138 ~k~~~c~vc~~~f~~~DII~L 158 (406)
+.+|.||+|+.+ +++.+.|
T Consensus 38 Pddw~CP~Cga~--K~~F~~~ 56 (70)
T 1dx8_A 38 SDSFMCPACRSP--KNQFKSI 56 (70)
T ss_dssp CTTCBCTTTCCB--GGGEEEC
T ss_pred CCCCcCCCCCCC--HHHceEc
Confidence 468999999985 4555554
No 196
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=53.06 E-value=4.4 Score=36.98 Aligned_cols=10 Identities=20% Similarity=-0.120 Sum_probs=8.5
Q ss_pred CccccCCCCC
Q 015475 140 NWKELLTDEP 149 (406)
Q Consensus 140 ~~~c~vc~~~ 149 (406)
.|.||+|+.+
T Consensus 186 p~~CP~C~~~ 195 (202)
T 1yuz_A 186 FEKCPICFRP 195 (202)
T ss_dssp CSBCTTTCCB
T ss_pred CCCCCCCCCC
Confidence 4899999975
No 197
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=53.06 E-value=7.5 Score=28.11 Aligned_cols=43 Identities=7% Similarity=0.180 Sum_probs=28.5
Q ss_pred CccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCC
Q 015475 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (406)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~ 153 (406)
-.|.|+++++.|...+.+. .. ..+-...+.+.|.+|++.|...
T Consensus 3 Kpy~C~~C~k~F~~~~~L~---------~H---~~~Ht~ekp~~C~~C~k~F~~~ 45 (60)
T 4gzn_C 3 RPFFCNFCGKTYRDASGLS---------RH---RRAHLGYRPRSCPECGKCFRDQ 45 (60)
T ss_dssp CCEECTTTCCEESSHHHHH---------HH---HHHHHTCCCEECTTTCCEESSH
T ss_pred CCccCCCCCCEeCCHHHHH---------HH---HHHhCCCcCeECCCCCCCcCCH
Confidence 3589999999997654221 11 1122234678999999999754
No 198
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=52.17 E-value=9.9 Score=25.82 Aligned_cols=44 Identities=18% Similarity=0.202 Sum_probs=27.1
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCC
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~ 152 (406)
...|.|+++.+.|.....+.. =+...-...+.+.|.+|++.|..
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~-----------H~~~~H~~~k~~~C~~C~k~F~~ 53 (54)
T 2eps_A 10 GKPYICQSCGKGFSRPDHLNG-----------HIKQVHTSERPHKCQVWVSGPSS 53 (54)
T ss_dssp SCCEECSSSCCEESSHHHHHH-----------HHHHTSCCCCCCCSSSSCCSSCC
T ss_pred CCCeECCCCCcccCCHHHHHH-----------HHHHhcCCCCCccCCCCCCCCCC
Confidence 346899999999976432110 00111122467899999999964
No 199
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=49.77 E-value=13 Score=27.05 Aligned_cols=49 Identities=8% Similarity=0.056 Sum_probs=36.4
Q ss_pred CccccccccccccCceeEEEEccCCe-----eehHHHHHHHhhccCCccccCCCCCCC
Q 015475 99 GEYHCPVLNKVFTEFTHIVAVKTTGN-----VFCFEAIKELNIKTKNWKELLTDEPFT 151 (406)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~cG~-----V~s~~ai~~l~~~~k~~~c~vc~~~f~ 151 (406)
+.-.|.|+..+..+ . .+.||.+ .|-..+|.+-.....+..|++|..+|.
T Consensus 5 ~~~~CrIC~~~~~~--~--l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGN--E--RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSC--C--CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCC--c--eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 34578888877443 2 3688765 888899998865445789999999986
No 200
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=49.29 E-value=11 Score=25.45 Aligned_cols=43 Identities=12% Similarity=0.114 Sum_probs=26.4
Q ss_pred CccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCC
Q 015475 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (406)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~ 153 (406)
..|.|+++++.|.....+. .. .+.-...+.+.|++|+..|...
T Consensus 3 ~~~~C~~C~~~f~~~~~l~---------~H---~~~h~~~~~~~C~~C~~~f~~~ 45 (57)
T 3uk3_C 3 SSRECSYCGKFFRSNYYLN---------IH---LRTHTGEKPYKCEFCEYAAAQK 45 (57)
T ss_dssp --CBCTTTCCBCSCHHHHH---------HH---HHHHHCCCCEECSSSSCEESSH
T ss_pred CCccCCCCcchhCChHHHH---------HH---HHHcCCCCCcCCCCCcchhCCH
Confidence 3589999999997643221 00 1111224578999999998754
No 201
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=48.44 E-value=8.6 Score=25.90 Aligned_cols=42 Identities=7% Similarity=0.131 Sum_probs=25.8
Q ss_pred ccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCC
Q 015475 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (406)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~ 153 (406)
.|.|+++++.|.....+.. . .+.-...+.+.|.+|+..|...
T Consensus 1 p~~C~~C~~~f~~~~~l~~---------H---~~~h~~~~~~~C~~C~~~f~~~ 42 (57)
T 1bbo_A 1 KYICEECGIRXKKPSMLKK---------H---IRTHTDVRPYHCTYCNFSFKTK 42 (57)
T ss_dssp CCBCTTTCCBCSSHHHHHH---------H---HHHTSSCCCEECSSSSCEESSH
T ss_pred CCcCCCCcCcCCCHHHHHH---------H---HHhcCCCCCccCCCCCchhcCH
Confidence 3789999999876432110 0 1111123568999999999753
No 202
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=48.09 E-value=13 Score=28.99 Aligned_cols=43 Identities=14% Similarity=0.127 Sum_probs=28.1
Q ss_pred CCccccccccccc-cCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCC
Q 015475 98 EGEYHCPVLNKVF-TEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (406)
Q Consensus 98 ~~~~~CPvt~k~f-~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~ 153 (406)
...|.|++|++.| .....+. ... +.- ..+.+.|.+|++.|...
T Consensus 32 ~~~~~C~~C~k~F~~~~~~L~---------~H~---~~h-~~k~~~C~~Cgk~F~~~ 75 (96)
T 2ctd_A 32 KGSVSCPTCQAVGRKTIEGLK---------KHM---ENC-KQEMFTCHHCGKQLRSL 75 (96)
T ss_dssp TSCEECTTTCSCEESSHHHHH---------HHH---HHH-CCCCCCCSSSCCCCSSH
T ss_pred CCCcCCCCCCCCcccCHHHHH---------HHH---HHH-CCCCeECCCCCCeeCCH
Confidence 4469999999999 6643321 111 111 24678999999999753
No 203
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=47.90 E-value=5 Score=31.22 Aligned_cols=44 Identities=14% Similarity=0.077 Sum_probs=28.4
Q ss_pred CccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCC
Q 015475 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED 154 (406)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~D 154 (406)
..|.||+|++.|.....+.. . .+.-...+.+.|.+|++.|...+
T Consensus 27 ~~h~C~~Cgk~F~~~~~L~~---------H---~~~H~~~k~~~C~~C~k~F~~~~ 70 (85)
T 2lv2_A 27 ECHLCPVCGESFASKGAQER---------H---LRLLHAAQVFPCKYCPATFYSSP 70 (85)
T ss_dssp TTEECTTSCCEESSHHHHHH---------H---HHTTSCSSSEECTTSSCEESSHH
T ss_pred CCEECCCCCCCcCcHHHHhh---------h---hhhccCCCccCCCCCCCEeCCHH
Confidence 35899999999986432210 0 01111236789999999998654
No 204
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=47.57 E-value=9.9 Score=27.34 Aligned_cols=44 Identities=14% Similarity=0.298 Sum_probs=28.3
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCC
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~ 153 (406)
...|.|++|.+.|.....+. .. .+.-...+.+.|.+|++.|...
T Consensus 15 ~~~~~C~~C~k~f~~~~~l~---------~H---~~~H~~~~~~~C~~C~k~f~~~ 58 (74)
T 2lce_A 15 DKPYKCDRCQASFRYKGNLA---------SH---KTVHTGEKPYRCNICGAQFNRP 58 (74)
T ss_dssp CCSBCCTTSSCCBSCHHHHH---------HH---HHHHCCCCSEECTTTCCEESCH
T ss_pred CCCeECCCCCceeCCHHHHH---------HH---HHHcCCCCCEECCCCCchhCCH
Confidence 45699999999997643211 01 0111223568999999999753
No 205
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=47.28 E-value=4.9 Score=35.70 Aligned_cols=92 Identities=12% Similarity=0.217 Sum_probs=63.7
Q ss_pred CccccCCCCCCCC---CeecCCCCEeeHhhHHHHHHhcCCCCCCCCCCCCCC-ccc---cccccCCCCcccccccccccc
Q 015475 39 FYCCALTFTPFED---PVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLED-LIP---LTFHKNAEGEYHCPVLNKVFT 111 (406)
Q Consensus 39 f~~C~LSl~Pl~~---PV~t~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkD-Li~---l~f~~n~~~~~~CPvt~k~f~ 111 (406)
-+.|..+..||.. +....+|.+|++.+.....-..+.|+.-++++...+ ++. -.|+.+ -|.|-.+.+.|.
T Consensus 32 CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e~~i~a~~~~~H~~---CF~C~~C~~~L~ 108 (188)
T 1rut_X 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLK---CFTCSTCRNRLV 108 (188)
T ss_dssp GCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTTSEEEEETTEEECGG---GCBCTTTCCBCC
T ss_pred CcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccCcEEEEcCCCEEeCC---CCeECCCCCCCC
Confidence 4678889999874 777799999999987665432225877787776544 222 233333 578999999996
Q ss_pred CceeEEEEccCCeeehHHHHHHHh
Q 015475 112 EFTHIVAVKTTGNVFCFEAIKELN 135 (406)
Q Consensus 112 ~~t~~v~i~~cG~V~s~~ai~~l~ 135 (406)
....|+. .-|.+|+..+..++.
T Consensus 109 ~g~~f~~--~~g~~yC~~c~~~~~ 130 (188)
T 1rut_X 109 PGDRFHY--INGSLFCEHDRPTAL 130 (188)
T ss_dssp TTCEEEE--ETTEEEEGGGCCTTT
T ss_pred CCCeEEE--ECCeEECHHHHHHHh
Confidence 5444542 468899988887664
No 206
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=43.71 E-value=18 Score=25.71 Aligned_cols=45 Identities=18% Similarity=0.387 Sum_probs=27.5
Q ss_pred CCcccccc--ccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCC
Q 015475 98 EGEYHCPV--LNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED 154 (406)
Q Consensus 98 ~~~~~CPv--t~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~D 154 (406)
...|.||+ |++.|.....+. .. .+.-...+.+.|.+|+..|...+
T Consensus 17 ~~~~~C~~~~C~k~f~~~~~l~---------~H---~~~h~~~~~~~C~~C~~~f~~~~ 63 (73)
T 1f2i_G 17 MRPYACPVESCDRRFSRSDELT---------RH---IRIHTGQKPFQCRICMRNFSRSD 63 (73)
T ss_dssp CCCEECSSTTBCCEESSHHHHH---------HH---HHHHHCCCCEECTTTCCEESCHH
T ss_pred CCccCCcCCCCCCccCCHHHHH---------HH---HHhhCCCCCeECCCCCchhCCHH
Confidence 45699985 888887533211 11 01112346789999999997543
No 207
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=43.69 E-value=12 Score=26.75 Aligned_cols=44 Identities=23% Similarity=0.400 Sum_probs=27.8
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCC
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~ 153 (406)
+..|.|++|.+.|.....+.. . .+.-...+.+.|++|+..|...
T Consensus 12 ~k~~~C~~C~k~f~~~~~L~~---------H---~~~h~~~~~~~C~~C~~~f~~~ 55 (72)
T 1x6e_A 12 EKPYGCVECGKAFSRSSILVQ---------H---QRVHTGEKPYKCLECGKAFSQN 55 (72)
T ss_dssp CCCEECSSSCCEESSHHHHHH---------H---HHGGGCSCCEECSSSCCEESSH
T ss_pred CCCccCCCCCCccCCHHHHHH---------H---HHhcCCCCCeECCCCCcccCCH
Confidence 346999999999975432110 0 0111224678999999999753
No 208
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=43.57 E-value=7.8 Score=38.69 Aligned_cols=45 Identities=18% Similarity=0.365 Sum_probs=34.0
Q ss_pred ccccCCCCCCCC----C--eec--CCCCEeeHhhHHHHHHhc-----------CCCCCCCCCCC
Q 015475 40 YCCALTFTPFED----P--VCT--ADGSVFELMSITPYIRKY-----------GKHPVTGTPLK 84 (406)
Q Consensus 40 ~~C~LSl~Pl~~----P--V~t--~~G~lf~ke~Il~~Ll~~-----------~~~Pvtg~~l~ 84 (406)
.-|+||+.-+.+ | +|. .-|+.|--.||.+||... |.||..+++++
T Consensus 309 ~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 309 LRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 469999987765 5 554 569999999999999864 45776666544
No 209
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=42.77 E-value=17 Score=28.42 Aligned_cols=79 Identities=13% Similarity=0.104 Sum_probs=41.5
Q ss_pred HhhHHHHHHhcC-----CCCCCCCCCCCCCcccccccc----CCCCccccccccccccCceeEEEEccCCeeehHHHHHH
Q 015475 63 LMSITPYIRKYG-----KHPVTGTPLKLEDLIPLTFHK----NAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKE 133 (406)
Q Consensus 63 ke~Il~~Ll~~~-----~~Pvtg~~l~lkDLi~l~f~~----n~~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~ 133 (406)
+..+..++..+. .|++-+.....+.-+..+... .....|.|+++.+.|.....+. .. .+
T Consensus 20 ~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~---------~H---~~ 87 (124)
T 2dlq_A 20 KYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELR---------LH---MV 87 (124)
T ss_dssp HHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHH---------HH---HH
T ss_pred HHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHH---------HH---HH
Confidence 455556666542 244445544444333333321 2245688888888886532211 00 01
Q ss_pred HhhccCCccccCCCCCCCCC
Q 015475 134 LNIKTKNWKELLTDEPFTKE 153 (406)
Q Consensus 134 l~~~~k~~~c~vc~~~f~~~ 153 (406)
.-...+.+.|++|+..|...
T Consensus 88 ~h~~~~~~~C~~C~~~f~~~ 107 (124)
T 2dlq_A 88 SHTGEMPYKCSSCSQQFMQK 107 (124)
T ss_dssp HHSSSCSEECSSSCCEESSH
T ss_pred HcCCCCCccCCCccchhCCH
Confidence 11223568999999998753
No 210
>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, J center for structural genomics, JCSG; 1.90A {Arthrobacter SP}
Probab=41.75 E-value=25 Score=31.74 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=26.2
Q ss_pred cEEEEEeccee--EEEEEcCCCChhHHHHHHHHH
Q 015475 349 GYVQLHTTHGD--LNIELHCDITPRSCENFITLC 380 (406)
Q Consensus 349 ~~v~l~T~~G~--i~ieL~~d~aP~t~~NF~~L~ 380 (406)
-|++|+-..+. ++.+|..+.||+||+.|..+-
T Consensus 22 r~i~itl~~~g~~~~A~Lldd~APkTcaA~~~~L 55 (188)
T 3kop_A 22 RYINITLEKRGVTCKALLLDDVAPRTSKAVWDAL 55 (188)
T ss_dssp CEEEEEETTTTEEEEEEECTTTSHHHHHHHHHHC
T ss_pred eEEEEEEecCCeEEEEEEccccChHHHHHHHHhC
Confidence 47777776664 588999999999999999864
No 211
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=40.77 E-value=7.7 Score=25.63 Aligned_cols=13 Identities=23% Similarity=0.457 Sum_probs=11.2
Q ss_pred cccccccccccCc
Q 015475 101 YHCPVLNKVFTEF 113 (406)
Q Consensus 101 ~~CPvt~k~f~~~ 113 (406)
|+||+|.+.|++.
T Consensus 6 FiCP~C~~~l~s~ 18 (34)
T 3mjh_B 6 FICPQCMKSLGSA 18 (34)
T ss_dssp EECTTTCCEESSH
T ss_pred cCCcHHHHHcCCH
Confidence 8999999998763
No 212
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=39.23 E-value=15 Score=24.99 Aligned_cols=42 Identities=19% Similarity=0.367 Sum_probs=25.9
Q ss_pred ccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCC
Q 015475 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (406)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~ 153 (406)
.|.|+++.+.|.....+.. . .+.-...+.+.|++|+..|...
T Consensus 2 ~~~C~~C~~~f~~~~~l~~---------H---~~~h~~~~~~~C~~C~~~f~~~ 43 (60)
T 2adr_A 2 SFVCEVCTRAFARQEHLKR---------H---YRSHTNEKPYPCGLCNRAFTRR 43 (60)
T ss_dssp CBCCTTTCCCBSCHHHHHH---------H---HHTTTSSCSEECTTTCCEESSH
T ss_pred cCcCCCCccccCCHHHHHH---------H---HHHhCCCCCccCCCCCCccCCH
Confidence 4889999999976432210 0 0011123568899999999754
No 213
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.28 E-value=16 Score=28.06 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=27.5
Q ss_pred CCcccccccccccc-CceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCC
Q 015475 98 EGEYHCPVLNKVFT-EFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (406)
Q Consensus 98 ~~~~~CPvt~k~f~-~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~ 153 (406)
...|.|++|.+.|. ....+. ....+-.- ..+.+.|.+|++.|...
T Consensus 22 ~~~~~C~~C~k~f~~~~~~L~---------~H~~~h~~--~~~~~~C~~C~k~F~~~ 67 (98)
T 2gqj_A 22 RGEAVCPTCNVVTRKTLVGLK---------KHMEVCQK--LQDALKCQHCRKQFKSK 67 (98)
T ss_dssp TSCCCCTTTCCCCSSCSHHHH---------HHHHHHHH--HHHHHSCSSSCCCCSCH
T ss_pred CCCcCCCCCCCChhhhHHHHH---------HHHHHHcC--CCCCEECCCCCCccCCH
Confidence 45799999999997 543221 11101000 02457899999999864
No 214
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=36.45 E-value=14 Score=26.20 Aligned_cols=44 Identities=5% Similarity=0.005 Sum_probs=27.4
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCC
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~ 153 (406)
+..|.|++|.+.|.....+.. . .+.-...+.+.|.+|+..|...
T Consensus 7 ~~~~~C~~C~k~f~~~~~L~~---------H---~~~H~~~~~~~C~~C~~~f~~~ 50 (70)
T 1x5w_A 7 GHPEKCSECSYSCSSKAALRI---------H---ERIHCTDRPFKCNYCSFDTKQP 50 (70)
T ss_dssp CCSEECSSSSCEESSHHHHHH---------H---HGGGCCSCSEECSSSSCEESSH
T ss_pred CCCeECCCCCcccCCHHHHHH---------H---HHHcCCCCCEeCCCCCCccCCH
Confidence 346899999999976432210 0 0111123568999999999754
No 215
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=35.82 E-value=18 Score=25.06 Aligned_cols=45 Identities=20% Similarity=0.342 Sum_probs=27.6
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHh-hccCCccccCCCCCCCCC
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELN-IKTKNWKELLTDEPFTKE 153 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~-~~~k~~~c~vc~~~f~~~ 153 (406)
+..|.|+++++.|.....+. .. +...- ...+.+.|++|++.|...
T Consensus 8 ~k~~~C~~C~k~f~~~~~l~---------~H--~~~~H~~~~~~~~C~~C~k~f~~~ 53 (66)
T 2drp_A 8 EHTYRCKVCSRVYTHISNFC---------RH--YVTSHKRNVKVYPCPFCFKEFTRK 53 (66)
T ss_dssp TTEEECTTTCCEESSHHHHH---------HH--HHHHSSSSCCCEECTTTCCEESCH
T ss_pred CcceECCCCcchhCCHHHHH---------HH--HHHHcCCCCcCeECCCCCCccCCH
Confidence 45689999999997643211 00 00001 124678999999999753
No 216
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.27 E-value=13 Score=26.89 Aligned_cols=47 Identities=6% Similarity=0.112 Sum_probs=28.0
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCC
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~ 153 (406)
+..|.|++|.+.|.....+. ....+-.-....+.+.|.+|+..|...
T Consensus 5 ~k~~~C~~C~k~f~~~~~L~---------~H~~~h~~~~~~~~~~C~~C~k~f~~~ 51 (78)
T 2d9h_A 5 SSGLQCEICGFTCRQKASLN---------WHQRKHAETVAALRFPCEFCGKRFEKP 51 (78)
T ss_dssp CCCEECSSSCCEESSHHHHH---------HHHHHHHHHTTTCCEECTTTCCEESSH
T ss_pred CcCeECCCCCCeeCCHHHHH---------HHHHHhhccCCCcccCCCCCCchhCCH
Confidence 34689999999997643221 111110000013678999999999754
No 217
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=34.63 E-value=21 Score=19.70 Aligned_cols=14 Identities=21% Similarity=0.192 Sum_probs=10.7
Q ss_pred CccccCCCCCCCCC
Q 015475 140 NWKELLTDEPFTKE 153 (406)
Q Consensus 140 ~~~c~vc~~~f~~~ 153 (406)
.+.|..|++.|...
T Consensus 2 ~~~C~~C~~~f~~~ 15 (29)
T 2m0e_A 2 EHKCPHCDKKFNQV 15 (29)
T ss_dssp CCCCSSCCCCCCTT
T ss_pred CCcCCCCCcccCCH
Confidence 46789999888654
No 218
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=34.34 E-value=28 Score=28.43 Aligned_cols=57 Identities=11% Similarity=0.107 Sum_probs=42.7
Q ss_pred ccccccccccccCc-eeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeEEecC
Q 015475 100 EYHCPVLNKVFTEF-THIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQN 160 (406)
Q Consensus 100 ~~~CPvt~k~f~~~-t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII~Lqd 160 (406)
-|.|-.+.+.|.+. ..++ ...|.+|+..+..++-.+. -+|-.|+++++..+|+.+.+
T Consensus 32 CF~C~~C~~~L~~~~~~~~--~~~g~~yC~~cy~~~f~~~--~~C~~C~~~I~~~~~~~~g~ 89 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSY--TKSGMILCRNDYIRLFGNS--GAGGSGGHMGSGGDVMVVGE 89 (122)
T ss_dssp HHCCSSSCCCTTTSEECCE--EETTEEECHHHHHHHHCCC--CSSSCSSCCSCCEESSSSSS
T ss_pred CCCcCCCCCcccccCCeEE--EECCeeecHHHHHHHcCCC--CccccCCCCcCchheEEcCC
Confidence 47799999999742 3333 4689999999999886321 27999999999877766543
No 219
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=33.39 E-value=16 Score=32.35 Aligned_cols=8 Identities=13% Similarity=0.069 Sum_probs=7.1
Q ss_pred cccCCCCC
Q 015475 142 KELLTDEP 149 (406)
Q Consensus 142 ~c~vc~~~ 149 (406)
.||+|+.|
T Consensus 155 ~CP~Cg~~ 162 (170)
T 3pwf_A 155 YCPVCGAP 162 (170)
T ss_dssp BCTTTCCB
T ss_pred CCCCCCCC
Confidence 89999965
No 220
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=33.26 E-value=14 Score=26.75 Aligned_cols=45 Identities=16% Similarity=0.252 Sum_probs=27.4
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhc-cCCccccCCCCCCCCC
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK-TKNWKELLTDEPFTKE 153 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~-~k~~~c~vc~~~f~~~ 153 (406)
+..|.|++|.+.|.....+.. =+...-.. .+.+.|++|+..|...
T Consensus 13 ~k~~~C~~C~k~f~~~~~L~~-----------H~~~~h~~~~~~~~C~~C~~~f~~~ 58 (77)
T 2ct1_A 13 EKPYECYICHARFTQSGTMKM-----------HILQKHTENVAKFHCPHCDTVIARK 58 (77)
T ss_dssp CCSEECTTTCCEESCHHHHHH-----------HHHHHSSSSCSSEECSSSSCEESSH
T ss_pred CCCeECCCcCchhCCHHHHHH-----------HHHHhcCCCCCccCCCCCCCccCCH
Confidence 346999999999976432110 00101111 2568999999999754
No 221
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=32.79 E-value=14 Score=22.36 Aligned_cols=16 Identities=38% Similarity=0.833 Sum_probs=13.6
Q ss_pred HHHHHHHhcCccCCce
Q 015475 374 ENFITLCERGYYNGVA 389 (406)
Q Consensus 374 ~NF~~L~~~g~Ydgt~ 389 (406)
.||-.-.++|||||..
T Consensus 4 knfwsslrkgfydgea 19 (26)
T 2khf_A 4 KNFWSSLRKGFYDGEA 19 (26)
T ss_dssp HHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHhhcccchh
Confidence 5898888999999853
No 222
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=32.20 E-value=73 Score=27.31 Aligned_cols=49 Identities=10% Similarity=0.095 Sum_probs=39.5
Q ss_pred ccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCCeE
Q 015475 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 156 (406)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII 156 (406)
-|.|-.+.+.|.+.. | . ..|.+|+..+..++. ..+|..|++++...++|
T Consensus 33 CF~C~~C~~~L~~~~-f--~-~~g~~yC~~~y~~~f----~~~C~~C~~~I~~~~~v 81 (169)
T 2rgt_A 33 CLKCSDCHVPLAERC-F--S-RGESVYCKDDFFKRF----GTKCAACQLGIPPTQVV 81 (169)
T ss_dssp TSBCTTTCCBCCSCC-E--E-SSSCEECHHHHHHHH----SCBCTTTCCBCCTTSEE
T ss_pred cCccCCCCCcCCCCC-c--c-cCCeeeecccccccc----cccccccccccCCCcEE
Confidence 578999999998764 3 2 589999999998885 24799999999877655
No 223
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=31.94 E-value=40 Score=25.52 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=11.5
Q ss_pred CCccccccccccccCc
Q 015475 98 EGEYHCPVLNKVFTEF 113 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~ 113 (406)
...|.|+++.+.|...
T Consensus 15 ~~~~~C~~C~~~f~~~ 30 (106)
T 2ee8_A 15 KKEFICKFCGRHFTKS 30 (106)
T ss_dssp CCCCBCSSSCCBCSSH
T ss_pred CcCeECCCCCCccCCH
Confidence 4468888888888653
No 224
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=31.54 E-value=21 Score=19.85 Aligned_cols=13 Identities=8% Similarity=0.240 Sum_probs=10.2
Q ss_pred CccccCCCCCCCC
Q 015475 140 NWKELLTDEPFTK 152 (406)
Q Consensus 140 ~~~c~vc~~~f~~ 152 (406)
.+.|.+|++.|..
T Consensus 2 ~~~C~~C~~~f~~ 14 (29)
T 1ard_A 2 SFVCEVCTRAFAR 14 (29)
T ss_dssp CCBCTTTCCBCSS
T ss_pred CeECCCCCcccCC
Confidence 4678899988875
No 225
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=31.23 E-value=25 Score=25.24 Aligned_cols=44 Identities=16% Similarity=0.274 Sum_probs=27.6
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCC
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~ 153 (406)
...|.|+++.+.|.....+..= .+.-...+.+.|.+|+..|...
T Consensus 16 ~~~~~C~~C~~~f~~~~~l~~H------------~~~h~~~~~~~C~~C~~~f~~~ 59 (77)
T 2cot_A 16 RRRYKCDECGKSFSHSSDLSKH------------RRTHTGEKPYKCDECGKAFIQR 59 (77)
T ss_dssp SCSSBCSSSCCBCSCHHHHHHH------------HTTTCCSCSEECSSSCCEESSH
T ss_pred CCCEECCCCCcccCCHHHHHHH------------HHHcCCCcCeeCCCCCCccCCH
Confidence 4579999999999754321100 0011123568999999999764
No 226
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=30.43 E-value=22 Score=21.37 Aligned_cols=14 Identities=21% Similarity=0.342 Sum_probs=10.9
Q ss_pred CCccccCCCCCCCC
Q 015475 139 KNWKELLTDEPFTK 152 (406)
Q Consensus 139 k~~~c~vc~~~f~~ 152 (406)
+.+.|.+|++.|..
T Consensus 10 k~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 10 KPFQCPDCDRSFSR 23 (37)
T ss_dssp SSBCCTTTCCCBSS
T ss_pred CCccCCCCCcccCc
Confidence 56788888888865
No 227
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=29.89 E-value=84 Score=25.66 Aligned_cols=52 Identities=23% Similarity=0.300 Sum_probs=37.9
Q ss_pred ccccccccccccCceeEEEEccCC-----eeehHHHHHHHhhccCCccccCCCCCCCCCCeE
Q 015475 100 EYHCPVLNKVFTEFTHIVAVKTTG-----NVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 156 (406)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~cG-----~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~DII 156 (406)
-..||||...=-. -|++|..+ ..|...|+-+|.. .+..-|++-+||+..=||
T Consensus 27 ~l~CPITL~~PE~---GVFvkNs~~S~VCsLyD~~Al~~Lv~--~~~~HPLSREpit~sMIv 83 (102)
T 2kkx_A 27 AIQCPITLEQPEK---GIFVKNSDGSDVCTLFDAAAFSRLVG--EGLPHPLTREPITASIIV 83 (102)
T ss_dssp GGCBTTTTBCCSE---EEEEEETTTTSEEEEEEHHHHHHHHH--HTCCCTTTCCCCCTTTEE
T ss_pred HcCCCeEEeeCCc---ceEEecCCCCccceecCHHHHHHHHh--cCCCCCCccCCCCHhhEe
Confidence 4679998765432 25566543 4689999999986 455789999999987555
No 228
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=29.45 E-value=60 Score=22.46 Aligned_cols=28 Identities=25% Similarity=0.501 Sum_probs=22.0
Q ss_pred CCCCCCC----eecCCCCEeeHhhHHHHHHhc
Q 015475 46 FTPFEDP----VCTADGSVFELMSITPYIRKY 73 (406)
Q Consensus 46 l~Pl~~P----V~t~~G~lf~ke~Il~~Ll~~ 73 (406)
..|++.| ||..-|.---.++|+.+|..|
T Consensus 8 ~~ple~~~~YRvC~~CgkPi~lsAIvdHLenh 39 (44)
T 2lo3_A 8 EDPLDKPIQYRVCEKCGKPLALTAIVDHLENH 39 (44)
T ss_dssp CCCCCCCCCEEECTTTCCEEETTTHHHHHHHC
T ss_pred hcccCccccchhhcccCCcchHHHHHHHHHHH
Confidence 3355544 777889999999999999976
No 229
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=29.23 E-value=16 Score=32.85 Aligned_cols=8 Identities=13% Similarity=-0.056 Sum_probs=7.3
Q ss_pred cccCCCCC
Q 015475 142 KELLTDEP 149 (406)
Q Consensus 142 ~c~vc~~~ 149 (406)
.||+|+.|
T Consensus 173 ~CP~C~~~ 180 (191)
T 1lko_A 173 LCPACAHP 180 (191)
T ss_dssp BCTTTCCB
T ss_pred CCCCCcCC
Confidence 89999986
No 230
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=29.10 E-value=32 Score=25.45 Aligned_cols=14 Identities=21% Similarity=0.631 Sum_probs=9.5
Q ss_pred CccccccccccccC
Q 015475 99 GEYHCPVLNKVFTE 112 (406)
Q Consensus 99 ~~~~CPvt~k~f~~ 112 (406)
..|.|+++.+.|..
T Consensus 6 ~~~~C~~C~~~f~~ 19 (95)
T 2yt9_A 6 SGVACEICGKIFRD 19 (95)
T ss_dssp SCEECSSSCCEESS
T ss_pred CCeECCCCCCccCC
Confidence 45777777777754
No 231
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=28.60 E-value=85 Score=25.24 Aligned_cols=48 Identities=8% Similarity=0.026 Sum_probs=38.3
Q ss_pred ccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCCC
Q 015475 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED 154 (406)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~D 154 (406)
-|.|-.+.+.|.+. .++ ...|.+|+..+..++. ..+|..|++++...+
T Consensus 30 CF~C~~C~~~L~~~-~f~--~~~g~~yC~~cy~~~~----~~~C~~C~~~I~~~~ 77 (126)
T 2xqn_T 30 HFCCFDCDSILAGE-IYV--MVNDKPVCKPCYVKNH----AVVCQGCHNAIDPEV 77 (126)
T ss_dssp GSBCTTTCCBCTTS-EEE--EETTEEEEHHHHHHHS----CCBCTTTCSBCCTTS
T ss_pred CCCcCCCCCCCCcC-EEE--eECCEEechHHhCcCc----CccCcccCCcCCcCc
Confidence 57899999999865 333 4689999999999875 347999999998644
No 232
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=28.21 E-value=42 Score=27.33 Aligned_cols=50 Identities=12% Similarity=0.084 Sum_probs=36.7
Q ss_pred ccccCCCCCCC---CCeecCCCCEeeHhhHHHHHHhcCCCCCCCCCCCCCCcc
Q 015475 40 YCCALTFTPFE---DPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLI 89 (406)
Q Consensus 40 ~~C~LSl~Pl~---~PV~t~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDLi 89 (406)
+.|..+..||. ......+|.+|++.+....+-..+.+-.-++++...+++
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~~ 85 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDVM 85 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEESS
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchheE
Confidence 57899999996 356779999999999877655444666666666655554
No 233
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=28.16 E-value=25 Score=26.13 Aligned_cols=42 Identities=7% Similarity=0.135 Sum_probs=24.8
Q ss_pred ccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCC
Q 015475 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (406)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~ 153 (406)
.|.|+++.+.|.....+. .. .+.-...+.+.|.+|+..|...
T Consensus 36 ~~~C~~C~~~f~~~~~l~---------~H---~~~h~~~~~~~C~~C~~~f~~~ 77 (96)
T 2dmd_A 36 PYKCKTCDYAAADSSSLN---------KH---LRIHSDERPFKCQICPYASRNS 77 (96)
T ss_dssp SEECSSSCCEESSHHHHH---------HH---HHHSCCCCCEECSSSSCEESSH
T ss_pred CEeCCCCCCccCCHHHHH---------HH---HHHhCCCCCccCCCCCCccCCH
Confidence 588888888886532111 00 0111123568899999998753
No 234
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=27.52 E-value=34 Score=24.36 Aligned_cols=13 Identities=23% Similarity=0.296 Sum_probs=7.5
Q ss_pred CCccccCCCCCCC
Q 015475 139 KNWKELLTDEPFT 151 (406)
Q Consensus 139 k~~~c~vc~~~f~ 151 (406)
+.+.|.+|+..|.
T Consensus 56 ~~~~C~~C~~~f~ 68 (82)
T 2kmk_A 56 KPHKCQVCGKAFS 68 (82)
T ss_dssp CCEECTTTSCEES
T ss_pred CCCcCCCcchhhC
Confidence 3456666666554
No 235
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=27.41 E-value=29 Score=19.22 Aligned_cols=14 Identities=0% Similarity=-0.059 Sum_probs=10.6
Q ss_pred CccccCCCCCCCCC
Q 015475 140 NWKELLTDEPFTKE 153 (406)
Q Consensus 140 ~~~c~vc~~~f~~~ 153 (406)
.+.|.+|+..|...
T Consensus 2 ~~~C~~C~k~f~~~ 15 (30)
T 1klr_A 2 TYQCQYCEFRSADS 15 (30)
T ss_dssp CCCCSSSSCCCSCS
T ss_pred CccCCCCCCccCCH
Confidence 46788999888653
No 236
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=27.20 E-value=31 Score=25.51 Aligned_cols=42 Identities=12% Similarity=0.300 Sum_probs=26.4
Q ss_pred ccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCC
Q 015475 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (406)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~ 153 (406)
.|.|+++++.|.....+. ... ..-...+.+.|.+|+..|...
T Consensus 3 ~~~C~~C~k~f~~~~~L~---------~H~---~~H~~~~~~~C~~C~k~f~~~ 44 (88)
T 1llm_C 3 PFQCRICMRNFSRSDHLT---------THI---RTHTGEKPFACDICGRKFARS 44 (88)
T ss_dssp CEECTTTCCEESCHHHHH---------HHH---HHHHCCCCEECTTTCCEESSH
T ss_pred CCcCCCCCCccCCHHHHH---------HHH---HHcCCCCCccCCCCCCccCCH
Confidence 588999999987643221 111 111223568999999999653
No 237
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=26.12 E-value=58 Score=23.47 Aligned_cols=44 Identities=9% Similarity=0.146 Sum_probs=26.9
Q ss_pred CccccCCCCCCCCCeecC---CC--CEeeHhhHHHHHHhcC--CCCCCCCC
Q 015475 39 FYCCALTFTPFEDPVCTA---DG--SVFELMSITPYIRKYG--KHPVTGTP 82 (406)
Q Consensus 39 f~~C~LSl~Pl~~PV~t~---~G--~lf~ke~Il~~Ll~~~--~~Pvtg~~ 82 (406)
-..|.|++....+|++.+ .| ..|=..+|..||...+ .+|+-+.+
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~ 56 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVV 56 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCB
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCe
Confidence 346888865444443332 33 4789999999998643 34444443
No 238
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=25.96 E-value=31 Score=19.29 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=11.2
Q ss_pred CccccCCCCCCCCCC
Q 015475 140 NWKELLTDEPFTKED 154 (406)
Q Consensus 140 ~~~c~vc~~~f~~~D 154 (406)
.+.|..|+..|....
T Consensus 2 ~~~C~~C~k~f~~~~ 16 (30)
T 1paa_A 2 AYACGLCNRAFTRRD 16 (30)
T ss_dssp CSBCTTTCCBCSSSH
T ss_pred CcCCcccCcccCChH
Confidence 467999999886543
No 239
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=25.41 E-value=27 Score=28.95 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=13.8
Q ss_pred CCCCccccccccccccCce
Q 015475 96 NAEGEYHCPVLNKVFTEFT 114 (406)
Q Consensus 96 n~~~~~~CPvt~k~f~~~t 114 (406)
+.+-.|.|++|++.|....
T Consensus 18 ~Gek~y~C~~C~k~F~~~~ 36 (133)
T 2lt7_A 18 DGRVYYICIVCKRSYVCLT 36 (133)
T ss_dssp TTEEEEEETTTCCEESCHH
T ss_pred CCCcCeECCCCCCCcCCHH
Confidence 3344599999999997643
No 240
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.09 E-value=31 Score=20.41 Aligned_cols=15 Identities=13% Similarity=0.118 Sum_probs=11.2
Q ss_pred CCccccCCCCCCCCC
Q 015475 139 KNWKELLTDEPFTKE 153 (406)
Q Consensus 139 k~~~c~vc~~~f~~~ 153 (406)
+.+.|.+|++.|...
T Consensus 8 ~~~~C~~C~k~f~~~ 22 (36)
T 2elr_A 8 KTHLCDMCGKKFKSK 22 (36)
T ss_dssp SSCBCTTTCCBCSSH
T ss_pred CCeecCcCCCCcCch
Confidence 467888888888653
No 241
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=24.96 E-value=36 Score=24.83 Aligned_cols=42 Identities=12% Similarity=0.305 Sum_probs=25.7
Q ss_pred ccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCC
Q 015475 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (406)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~ 153 (406)
.|.|+++.+.|.....+. .. ...-...+.+.|++|+..|...
T Consensus 34 ~~~C~~C~~~f~~~~~l~---------~H---~~~h~~~~~~~C~~C~~~f~~~ 75 (90)
T 1a1h_A 34 PFQCRICMRNFSRSDHLT---------TH---IRTHTGEKPFACDICGRKFARS 75 (90)
T ss_dssp CEECTTTCCEESCHHHHH---------HH---HHHHHCCCCEECTTTCCEESSH
T ss_pred CccCCCCCcccCCHHHHH---------HH---HHHcCCCCCccCCCCCchhCCH
Confidence 588999988886532211 00 0111224568999999998753
No 242
>1h0z_A Serine protease inhibitor kazal-type 5, contains hemofiltrate peptide HF6478, hemofiltrate...; serine proteinase inhibitor; NMR {Homo sapiens} SCOP: g.68.1.2
Probab=24.94 E-value=36 Score=25.86 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=19.7
Q ss_pred CCCCCCeecCCCCEeeHhhHHHHH
Q 015475 47 TPFEDPVCTADGSVFELMSITPYI 70 (406)
Q Consensus 47 ~Pl~~PV~t~~G~lf~ke~Il~~L 70 (406)
....+|||..+|..|.-++.+-.-
T Consensus 27 ~~~y~PVCGsDGkTY~N~C~lc~a 50 (68)
T 1h0z_A 27 TRENDPIQGPDGKVHGNTCSMCEV 50 (68)
T ss_dssp CCCSCCCBCTTSCBCSSHHHHHHH
T ss_pred CCCCCccCCCCCCEeCCHhHHhHH
Confidence 346799999999999999987543
No 243
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=24.89 E-value=33 Score=20.36 Aligned_cols=14 Identities=7% Similarity=0.105 Sum_probs=10.9
Q ss_pred CccccCCCCCCCCC
Q 015475 140 NWKELLTDEPFTKE 153 (406)
Q Consensus 140 ~~~c~vc~~~f~~~ 153 (406)
.+.|.+|++.|...
T Consensus 2 p~~C~~C~k~F~~~ 15 (33)
T 1rim_A 2 KFACPECPKRFMRS 15 (33)
T ss_dssp CCCCSSSCCCCSSH
T ss_pred cccCCCCCchhCCH
Confidence 46799999998753
No 244
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=30.25 E-value=16 Score=20.15 Aligned_cols=13 Identities=31% Similarity=0.534 Sum_probs=7.7
Q ss_pred cccccccccccCc
Q 015475 101 YHCPVLNKVFTEF 113 (406)
Q Consensus 101 ~~CPvt~k~f~~~ 113 (406)
|.|+++++.|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 3 YVCERCGKRFVQS 15 (26)
Confidence 5566666666544
No 245
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=24.41 E-value=21 Score=19.76 Aligned_cols=14 Identities=14% Similarity=0.050 Sum_probs=9.9
Q ss_pred CCccccCCCCCCCC
Q 015475 139 KNWKELLTDEPFTK 152 (406)
Q Consensus 139 k~~~c~vc~~~f~~ 152 (406)
+.+.|.+|++.|..
T Consensus 2 k~~~C~~C~k~f~~ 15 (27)
T 2kvh_A 2 KPFSCSLCPQRSRD 15 (27)
T ss_dssp CCEECSSSSCEESS
T ss_pred cCccCCCcChhhCC
Confidence 35678888887764
No 246
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=23.59 E-value=23 Score=19.69 Aligned_cols=14 Identities=7% Similarity=0.105 Sum_probs=10.1
Q ss_pred CccccCCCCCCCCC
Q 015475 140 NWKELLTDEPFTKE 153 (406)
Q Consensus 140 ~~~c~vc~~~f~~~ 153 (406)
.+.|.+|+..|...
T Consensus 2 ~~~C~~C~k~f~~~ 15 (29)
T 1rik_A 2 KFACPECPKRFMRS 15 (29)
T ss_dssp CEECSSSSCEESCS
T ss_pred CccCCCCCchhCCH
Confidence 45788888888654
No 247
>3pis_D Kazal-type serine protease inhibitor SPI-1; typical non-classical kazal type inhibitor fold; 2.00A {Carcinoscorpius rotundicauda}
Probab=23.51 E-value=43 Score=22.85 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=18.0
Q ss_pred CCCeecCCCCEeeHhhHHHHH
Q 015475 50 EDPVCTADGSVFELMSITPYI 70 (406)
Q Consensus 50 ~~PV~t~~G~lf~ke~Il~~L 70 (406)
..|||..+|..|.-++.+...
T Consensus 7 ~~PVCGsDG~TY~N~C~l~~a 27 (42)
T 3pis_D 7 YKPVCGANGEVYDNECFLNKA 27 (42)
T ss_dssp CCCEEBTTSCEESSHHHHHHT
T ss_pred CCceECCCCCEEccHhHHHHH
Confidence 469999999999999988754
No 248
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.30 E-value=24 Score=19.62 Aligned_cols=13 Identities=8% Similarity=0.164 Sum_probs=9.8
Q ss_pred CccccCCCCCCCC
Q 015475 140 NWKELLTDEPFTK 152 (406)
Q Consensus 140 ~~~c~vc~~~f~~ 152 (406)
.+.|.+|++.|..
T Consensus 3 ~~~C~~C~k~f~~ 15 (28)
T 2kvf_A 3 PYSCSVCGKRFSL 15 (28)
T ss_dssp SEECSSSCCEESC
T ss_pred CccCCCCCcccCC
Confidence 4678888888864
No 249
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=22.93 E-value=64 Score=25.43 Aligned_cols=42 Identities=12% Similarity=0.166 Sum_probs=26.7
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCC
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~ 153 (406)
...|.|++|++.|.....+. ... +.- .+.+.|.+|++.|...
T Consensus 72 ~~~~~C~~C~k~f~~~~~l~---------~H~---~~H--~~~~~C~~C~k~f~~~ 113 (129)
T 2wbt_A 72 ISQFVCPLCLMPFSSSVSLK---------QHI---RYT--EHTKVCPVCKKEFTST 113 (129)
T ss_dssp HCSEECTTTCCEESSHHHHH---------HHH---HHT--CCCCBCTTTCCBCSSH
T ss_pred CCCeECCCCCcccCCHhHHH---------HHH---HHC--CCCCCCCCCCcccCCH
Confidence 34689999999987543211 111 010 3568999999999753
No 250
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=22.79 E-value=64 Score=24.58 Aligned_cols=42 Identities=12% Similarity=0.122 Sum_probs=25.1
Q ss_pred CCccccccccccccCceeEEEEccCCeeehHHHHHHHhhccCCccccCCCCCCCCC
Q 015475 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~cG~V~s~~ai~~l~~~~k~~~c~vc~~~f~~~ 153 (406)
+..|.|+++.+.|.....+.. ...+ - .+.+.|.+|+..|...
T Consensus 14 ~~~~~C~~C~~~f~~~~~l~~---------H~~~---H--~~~~~C~~C~~~f~~~ 55 (107)
T 1wjp_A 14 KEVYQCRLCNAKLSSLLEQGS---------HERL---C--RNAAVCPYCSLRFFSP 55 (107)
T ss_dssp CCCCBCTTTCCBCSSHHHHHH---------HHHH---H--HHSBCCTTTCCCBSSH
T ss_pred CcCeECCCCCCccCCHHHHHH---------HHHH---C--CCCccCCCCCCccCCH
Confidence 346999999999976432110 0000 0 1356788888888643
No 251
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=21.74 E-value=31 Score=22.40 Aligned_cols=17 Identities=18% Similarity=0.512 Sum_probs=12.9
Q ss_pred CCccccccccccccCce
Q 015475 98 EGEYHCPVLNKVFTEFT 114 (406)
Q Consensus 98 ~~~~~CPvt~k~f~~~t 114 (406)
...|.|+++.+.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (48)
T 2epr_A 10 RKQVACEICGKIFRDVY 26 (48)
T ss_dssp CCSEEETTTTEEESSHH
T ss_pred CcCeeCCCCCcccCCHH
Confidence 34689999999987643
No 252
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=26.31 E-value=21 Score=20.09 Aligned_cols=14 Identities=29% Similarity=0.586 Sum_probs=8.9
Q ss_pred cccccccccccCce
Q 015475 101 YHCPVLNKVFTEFT 114 (406)
Q Consensus 101 ~~CPvt~k~f~~~t 114 (406)
|.|+++++.|....
T Consensus 3 ~~C~~C~k~f~~~~ 16 (29)
T 2lvt_A 3 CQCVMCGKAFTQAS 16 (29)
Confidence 56777777765543
No 253
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=20.80 E-value=1.7e+02 Score=23.39 Aligned_cols=86 Identities=12% Similarity=0.127 Sum_probs=55.2
Q ss_pred CccccCCCCCCCC-CeecCCCCEeeHhhHHHHHHhcCCCCCCCCCCCCCCc-c-cc--ccccCCCCccccccccccccCc
Q 015475 39 FYCCALTFTPFED-PVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDL-I-PL--TFHKNAEGEYHCPVLNKVFTEF 113 (406)
Q Consensus 39 f~~C~LSl~Pl~~-PV~t~~G~lf~ke~Il~~Ll~~~~~Pvtg~~l~lkDL-i-~l--~f~~n~~~~~~CPvt~k~f~~~ 113 (406)
-..|..+..||.. +....+|.+|++....... ..+++.-++++...+. + .+ .|+.. ..-|.|-.+.+.|.+.
T Consensus 30 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~--~~~C~~C~~~I~~~~~~~~a~~~~~H~~-~~CF~C~~C~~~l~~~ 106 (126)
T 2xqn_T 30 HFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH--AVVCQGCHNAIDPEVQRVTYNNFSWHAS-TECFLCSCCSKCLIGQ 106 (126)
T ss_dssp GSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS--CCBCTTTCSBCCTTSCEEEETTEEEESS-TTTSBCTTTCCBCTTS
T ss_pred CCCcCCCCCCCCcCEEEeECCEEechHHhCcCc--CccCcccCCcCCcCceEEECCCCEeeCC-CCCcCcCCCCCccCCC
Confidence 3678888999886 5666999999988875532 2356666777775432 2 11 23311 2347799999999754
Q ss_pred eeEEEEccCCeeehHHH
Q 015475 114 THIVAVKTTGNVFCFEA 130 (406)
Q Consensus 114 t~~v~i~~cG~V~s~~a 130 (406)
.++ + .-|.+|+...
T Consensus 107 -~f~-~-~~~~~yC~~~ 120 (126)
T 2xqn_T 107 -KFM-P-VEGMVFCSVE 120 (126)
T ss_dssp -EEE-E-ETTEEESSHH
T ss_pred -eeE-e-ECCEEcchHH
Confidence 343 2 3688888733
No 254
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.77 E-value=29 Score=20.39 Aligned_cols=14 Identities=14% Similarity=0.143 Sum_probs=10.7
Q ss_pred CCccccCCCCCCCC
Q 015475 139 KNWKELLTDEPFTK 152 (406)
Q Consensus 139 k~~~c~vc~~~f~~ 152 (406)
+.+.|.+|+..|..
T Consensus 6 k~~~C~~C~k~f~~ 19 (35)
T 2elx_A 6 SGYVCALCLKKFVS 19 (35)
T ss_dssp CSEECSSSCCEESS
T ss_pred CCeECCCCcchhCC
Confidence 45788888888865
No 255
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=20.73 E-value=99 Score=22.20 Aligned_cols=16 Identities=13% Similarity=0.339 Sum_probs=12.4
Q ss_pred cCCccccCCCCCCCCC
Q 015475 138 TKNWKELLTDEPFTKE 153 (406)
Q Consensus 138 ~k~~~c~vc~~~f~~~ 153 (406)
.+.+.|++|+..|...
T Consensus 63 ~~~~~C~~C~~~f~~~ 78 (89)
T 2wbs_A 63 HRPFQCQKCDRAFSRS 78 (89)
T ss_dssp CCCEECSSSSCEESSH
T ss_pred CCCccCCCCCcccCCH
Confidence 4568899999988653
No 256
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.04 E-value=31 Score=20.71 Aligned_cols=15 Identities=27% Similarity=0.157 Sum_probs=10.8
Q ss_pred CCccccCCCCCCCCC
Q 015475 139 KNWKELLTDEPFTKE 153 (406)
Q Consensus 139 k~~~c~vc~~~f~~~ 153 (406)
+.+.|.+|+..|...
T Consensus 8 k~~~C~~C~k~f~~~ 22 (37)
T 2elp_A 8 RAMKCPYCDFYFMKN 22 (37)
T ss_dssp CCEECSSSSCEECSS
T ss_pred CCeECCCCChhhccC
Confidence 456788888888653
No 257
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=20.00 E-value=35 Score=20.05 Aligned_cols=14 Identities=7% Similarity=0.116 Sum_probs=10.8
Q ss_pred CccccCCCCCCCCC
Q 015475 140 NWKELLTDEPFTKE 153 (406)
Q Consensus 140 ~~~c~vc~~~f~~~ 153 (406)
.+.|.+|++.|...
T Consensus 2 p~~C~~C~k~f~~~ 15 (32)
T 2kfq_A 2 AFACPACPKRFMRS 15 (32)
T ss_dssp CSSSSSSCTTHHHH
T ss_pred CCCCCCCCcccCCH
Confidence 46899999988643
Done!