BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015481
(406 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 118/235 (50%), Gaps = 7/235 (2%)
Query: 94 CLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIP-DSFRNMQLLFELDVSN 152
C T+ G+DL+ + G +P G L ++SN F G +P D+ M+ L LD+S
Sbjct: 290 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 349
Query: 153 NQFSGCFPSVVLCL-PSLKFLDIRFNQFEGEI-PSAVFDLK--LDALFLNNNKFTSSLPN 208
N+FSG P + L SL LD+ N F G I P+ + K L L+L NN FT +P
Sbjct: 350 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 409
Query: 209 NIGN-SPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVF 267
+ N S + L L+ N +P SL ++ L ++ L L+G + +++ + +
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETL 468
Query: 268 DVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFF 322
+ FN+L G +P + N +L +++++N L+G IP I L L S N F
Sbjct: 469 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 523
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 118/261 (45%), Gaps = 28/261 (10%)
Query: 93 DCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIP----DSFRNMQL---- 144
DC + +D++ ++G + +L L +I+SN+F G IP S + + L
Sbjct: 218 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENK 277
Query: 145 ---------------LFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIP-SAVF 188
L LD+S N F G P L+ L + N F GE+P +
Sbjct: 278 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 337
Query: 189 DLK-LDALFLNNNKFTSSLPNNIGNSPVSVLV--LANNNFDSCLPPSLTKM-AGTLNEII 244
++ L L L+ N+F+ LP ++ N S+L L++NNF + P+L + TL E+
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 397
Query: 245 LANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPN 304
L N G + + +++ +SFN L G++P S+G++ L L + N L G IP
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 457
Query: 305 SICCLPKLENFTYSYNFFCTE 325
+ + LE +N E
Sbjct: 458 ELMYVKTLETLILDFNDLTGE 478
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 96/196 (48%), Gaps = 7/196 (3%)
Query: 120 DLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQF 179
+L ++SN F IP + L LD+S N+ SG F + LK L+I NQF
Sbjct: 198 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 256
Query: 180 EGEIPSAVFDLKLDALFLNNNKFTSSLPNNIGNS--PVSVLVLANNNFDSCLPPSLTKMA 237
G IP L L L NKFT +P+ + + ++ L L+ N+F +PP +
Sbjct: 257 VGPIPPLPLK-SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 315
Query: 238 GTLNEIILANAKLKGCLLKDIGL-LNQVTVFDVSFNNLVGSLPESMGNMK-SLEQLNVAH 295
+ + +N G L D L + + V D+SFN G LPES+ N+ SL L+++
Sbjct: 316 LLESLALSSN-NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 374
Query: 296 NNLSGAIPNSICCLPK 311
NN SG I ++C PK
Sbjct: 375 NNFSGPILPNLCQNPK 390
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 122/279 (43%), Gaps = 47/279 (16%)
Query: 89 PDDPDCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFEL 148
P +C + + L+ ++GT+P LG L L + N G IP ++ L L
Sbjct: 409 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 468
Query: 149 DVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLP 207
+ N +G PS + +L ++ + N+ GEIP + L+ L L L+NN F+ ++P
Sbjct: 469 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 528
Query: 208 NNIGNSPVSVLVLANNN-FDSCLPPSLTKMAGTLNEIILANAKL--------------KG 252
+G+ + + N N F+ +P ++ K +G + +A + G
Sbjct: 529 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 588
Query: 253 CLLKDIGL----LNQVTV---------------------------FDVSFNNLVGSLPES 281
LL+ G+ LN+++ D+S+N L G +P+
Sbjct: 589 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 648
Query: 282 MGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYN 320
+G+M L LN+ HN++SG+IP+ + L L S N
Sbjct: 649 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 687
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 113/253 (44%), Gaps = 33/253 (13%)
Query: 96 TVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQF 155
T+ + L+ ++ G +P L +L +++NR G IP ++ L L +SNN F
Sbjct: 464 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 523
Query: 156 SGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDL--KLDALFLNNNKFTSSLPNNIGNS 213
SG P+ + SL +LD+ N F G IP+A+F K+ A F+ ++ I N
Sbjct: 524 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY-----IKND 578
Query: 214 PVSVLVLANNN---FDSCLPPSLTKMA-----------------------GTLNEIILAN 247
+ N F L +++ G++ + ++
Sbjct: 579 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 638
Query: 248 AKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSIC 307
L G + K+IG + + + ++ N++ GS+P+ +G+++ L L+++ N L G IP ++
Sbjct: 639 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 698
Query: 308 CLPKLENFTYSYN 320
L L S N
Sbjct: 699 ALTMLTEIDLSNN 711
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 110/235 (46%), Gaps = 25/235 (10%)
Query: 93 DCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSN 152
+C + I L+ + G +P+ +G L++LA+ +++N F G IP + + L LD++
Sbjct: 485 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 544
Query: 153 NQFSGCFPSVVL---------CLPSLKFLDIRFNQFEGEIPSAVFDLKLDALFLNN-NKF 202
N F+G P+ + + +++ I+ + + E A L+ + N+
Sbjct: 545 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 604
Query: 203 TSSLPNNI--------------GNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANA 248
++ P NI N + L ++ N +P + M L + L +
Sbjct: 605 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP-YLFILNLGHN 663
Query: 249 KLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIP 303
+ G + ++G L + + D+S N L G +P++M + L ++++++NNLSG IP
Sbjct: 664 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 7/129 (5%)
Query: 76 NVCNYT----GVYCAPAPDDPDCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRF 131
N CN T G + +P D+ + +D++ ++G +P+++G + L + ++ N
Sbjct: 608 NPCNITSRVYGGHTSPTFDNNGSMMF--LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 665
Query: 132 CGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPS-AVFDL 190
G+IPD +++ L LD+S+N+ G P + L L +D+ N G IP F+
Sbjct: 666 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFET 725
Query: 191 KLDALFLNN 199
A FLNN
Sbjct: 726 FPPAKFLNN 734
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 118/235 (50%), Gaps = 7/235 (2%)
Query: 94 CLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIP-DSFRNMQLLFELDVSN 152
C T+ G+DL+ + G +P G L ++SN F G +P D+ M+ L LD+S
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352
Query: 153 NQFSGCFPSVVLCL-PSLKFLDIRFNQFEGEI-PSAVFDLK--LDALFLNNNKFTSSLPN 208
N+FSG P + L SL LD+ N F G I P+ + K L L+L NN FT +P
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412
Query: 209 NIGN-SPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVF 267
+ N S + L L+ N +P SL ++ L ++ L L+G + +++ + +
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETL 471
Query: 268 DVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFF 322
+ FN+L G +P + N +L +++++N L+G IP I L L S N F
Sbjct: 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 118/261 (45%), Gaps = 28/261 (10%)
Query: 93 DCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIP----DSFRNMQL---- 144
DC + +D++ ++G + +L L +I+SN+F G IP S + + L
Sbjct: 221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENK 280
Query: 145 ---------------LFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIP-SAVF 188
L LD+S N F G P L+ L + N F GE+P +
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340
Query: 189 DLK-LDALFLNNNKFTSSLPNNIGNSPVSVLV--LANNNFDSCLPPSLTKM-AGTLNEII 244
++ L L L+ N+F+ LP ++ N S+L L++NNF + P+L + TL E+
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 245 LANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPN 304
L N G + + +++ +SFN L G++P S+G++ L L + N L G IP
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 305 SICCLPKLENFTYSYNFFCTE 325
+ + LE +N E
Sbjct: 461 ELMYVKTLETLILDFNDLTGE 481
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 96/196 (48%), Gaps = 7/196 (3%)
Query: 120 DLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQF 179
+L ++SN F IP + L LD+S N+ SG F + LK L+I NQF
Sbjct: 201 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Query: 180 EGEIPSAVFDLKLDALFLNNNKFTSSLPNNIGNS--PVSVLVLANNNFDSCLPPSLTKMA 237
G IP L L L NKFT +P+ + + ++ L L+ N+F +PP +
Sbjct: 260 VGPIPPLPLK-SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 238 GTLNEIILANAKLKGCLLKDIGL-LNQVTVFDVSFNNLVGSLPESMGNMK-SLEQLNVAH 295
+ + +N G L D L + + V D+SFN G LPES+ N+ SL L+++
Sbjct: 319 LLESLALSSN-NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 377
Query: 296 NNLSGAIPNSICCLPK 311
NN SG I ++C PK
Sbjct: 378 NNFSGPILPNLCQNPK 393
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 122/279 (43%), Gaps = 47/279 (16%)
Query: 89 PDDPDCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFEL 148
P +C + + L+ ++GT+P LG L L + N G IP ++ L L
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471
Query: 149 DVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLP 207
+ N +G PS + +L ++ + N+ GEIP + L+ L L L+NN F+ ++P
Sbjct: 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
Query: 208 NNIGNSPVSVLVLANNN-FDSCLPPSLTKMAGTLNEIILANAKL--------------KG 252
+G+ + + N N F+ +P ++ K +G + +A + G
Sbjct: 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 591
Query: 253 CLLKDIGL----LNQVTV---------------------------FDVSFNNLVGSLPES 281
LL+ G+ LN+++ D+S+N L G +P+
Sbjct: 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651
Query: 282 MGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYN 320
+G+M L LN+ HN++SG+IP+ + L L S N
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 113/253 (44%), Gaps = 33/253 (13%)
Query: 96 TVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQF 155
T+ + L+ ++ G +P L +L +++NR G IP ++ L L +SNN F
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526
Query: 156 SGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDL--KLDALFLNNNKFTSSLPNNIGNS 213
SG P+ + SL +LD+ N F G IP+A+F K+ A F+ ++ I N
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY-----IKND 581
Query: 214 PVSVLVLANNN---FDSCLPPSLTKMA-----------------------GTLNEIILAN 247
+ N F L +++ G++ + ++
Sbjct: 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641
Query: 248 AKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSIC 307
L G + K+IG + + + ++ N++ GS+P+ +G+++ L L+++ N L G IP ++
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701
Query: 308 CLPKLENFTYSYN 320
L L S N
Sbjct: 702 ALTMLTEIDLSNN 714
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 110/235 (46%), Gaps = 25/235 (10%)
Query: 93 DCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSN 152
+C + I L+ + G +P+ +G L++LA+ +++N F G IP + + L LD++
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547
Query: 153 NQFSGCFPSVVL---------CLPSLKFLDIRFNQFEGEIPSAVFDLKLDALFLNN-NKF 202
N F+G P+ + + +++ I+ + + E A L+ + N+
Sbjct: 548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607
Query: 203 TSSLPNNI--------------GNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANA 248
++ P NI N + L ++ N +P + M L + L +
Sbjct: 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP-YLFILNLGHN 666
Query: 249 KLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIP 303
+ G + ++G L + + D+S N L G +P++M + L ++++++NNLSG IP
Sbjct: 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 7/129 (5%)
Query: 76 NVCNYT----GVYCAPAPDDPDCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRF 131
N CN T G + +P D+ + +D++ ++G +P+++G + L + ++ N
Sbjct: 611 NPCNITSRVYGGHTSPTFDNNGSMMF--LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668
Query: 132 CGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPS-AVFDL 190
G+IPD +++ L LD+S+N+ G P + L L +D+ N G IP F+
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFET 728
Query: 191 KLDALFLNN 199
A FLNN
Sbjct: 729 FPPAKFLNN 737
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 94/211 (44%), Gaps = 8/211 (3%)
Query: 95 LTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQ 154
L + GI+ N+ G +P + L L +I G IPD ++ L LD S N
Sbjct: 81 LYIGGIN----NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA 136
Query: 155 FSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAV--FDLKLDALFLNNNKFTSSLPNNIGN 212
SG P + LP+L + N+ G IP + F ++ ++ N+ T +P N
Sbjct: 137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196
Query: 213 SPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFN 272
++ + L+ N + T +I LA L L K +GL + D+ N
Sbjct: 197 LNLAFVDLSRNMLEGDASVLFGSDKNT-QKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNN 254
Query: 273 NLVGSLPESMGNMKSLEQLNVAHNNLSGAIP 303
+ G+LP+ + +K L LNV+ NNL G IP
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 98/228 (42%), Gaps = 24/228 (10%)
Query: 113 EKLGLLQDLALFH--INSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLK 170
EKL LQ L L H I ++ C + R++Q L ++S N+ G P L+
Sbjct: 346 EKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYL---NLSYNEPLGLEDQAFKECPQLE 402
Query: 171 FLDIRFNQFEGEIPSAVFD-------LKLDALFLNNNKFTSSLPNNIGNSPVSVLVLANN 223
LD+ F + P + F L L L+ TS+ G + L L N
Sbjct: 403 LLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLD----TSNQHLLAGLQDLRHLNLQGN 458
Query: 224 NFD--SCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPES 281
+F S +L +M G+L +IL++ L + L V D+S N+L G ++
Sbjct: 459 SFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDA 518
Query: 282 MGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPLAC 329
+ ++K L LN+A NN+ P+ + L + S+N PL C
Sbjct: 519 LSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLSHN-----PLDC 560
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 37/208 (17%)
Query: 120 DLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQF 179
D AL + +N+ F+N++ L L + NN+ S P L L+ L + NQ
Sbjct: 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112
Query: 180 E---GEIPSAVFDLKLD-------------------ALFLNNNKFTSSLPNN---IGNSP 214
+ ++P + +L++ + L N SS N G
Sbjct: 113 KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 215 VSVLVLANNNFDSC---LPPSLTKMAGTLNEIILAN-AKLKGCLLKDIGLLNQVTVFDVS 270
+S + +A+ N + LPPSLT++ N+I + A LKG LN + +S
Sbjct: 173 LSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKG--------LNNLAKLGLS 224
Query: 271 FNNLVGSLPESMGNMKSLEQLNVAHNNL 298
FN++ S+ N L +L++ +N L
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 37/208 (17%)
Query: 120 DLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQF 179
D AL + +N+ F+N++ L L + NN+ S P L L+ L + NQ
Sbjct: 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112
Query: 180 E---GEIPSAVFDLKLD-------------------ALFLNNNKFTSSLPNN---IGNSP 214
+ ++P + +L++ + L N SS N G
Sbjct: 113 KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 215 VSVLVLANNNFDSC---LPPSLTKMAGTLNEIILAN-AKLKGCLLKDIGLLNQVTVFDVS 270
+S + +A+ N + LPPSLT++ N+I + A LKG LN + +S
Sbjct: 173 LSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKG--------LNNLAKLGLS 224
Query: 271 FNNLVGSLPESMGNMKSLEQLNVAHNNL 298
FN++ S+ N L +L++ +N L
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 100/230 (43%), Gaps = 28/230 (12%)
Query: 113 EKLGLLQDLALFH--INSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLK 170
EKLG LQ L L H I ++ C +N+ L L++S+N+ G P L+
Sbjct: 344 EKLGNLQTLDLSHNDIEASDCCSL---QLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLE 400
Query: 171 FLDIRFNQFEGEIPSAVFD-------LKLDALFLN--NNKFTSSLPNNIGNSPVSVLVLA 221
LD+ F + P + F L L FL+ N + LP + L L
Sbjct: 401 LLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLP------VLRHLNLK 454
Query: 222 NNNFD--SCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLP 279
N+F + +L + G+L +IL++ L + L +++ D+S N+L
Sbjct: 455 GNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSI 514
Query: 280 ESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPLAC 329
+S+ ++K + LN+A N+++ P + L + S+N PL C
Sbjct: 515 DSLSHLKGI-YLNLAANSINIISPRLLPILSQQSTINLSHN-----PLDC 558
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Query: 116 GLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIR 175
G+ + + +++ N+ P F ++ L EL + +NQ V L L LD+
Sbjct: 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96
Query: 176 FNQFEGEIPSAVFD--LKLDALFLNNNKFTSSLPNNIGN-SPVSVLVLANNNFDS 227
NQ +PSAVFD + L LF+ NK T LP I + ++ L L N S
Sbjct: 97 TNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS 149
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
Query: 220 LANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQ----VTVFDVSFNNLV 275
L N D C LTK+ +L L L+ + LL Q +TV DVSFN L
Sbjct: 57 LTQLNLDRC---ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 276 GSLP-ESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPLACL 330
SLP ++ + L++L + N L P + PKLE + + N P L
Sbjct: 114 -SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLL 168
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
Query: 220 LANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQ----VTVFDVSFNNLV 275
L N D C LTK+ +L L L+ + LL Q +TV DVSFN L
Sbjct: 57 LTQLNLDRC---ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 276 GSLP-ESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPLACL 330
SLP ++ + L++L + N L P + PKLE + + N P L
Sbjct: 114 -SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLL 168
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 7/115 (6%)
Query: 220 LANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQ----VTVFDVSFNNLV 275
L N D C LTK+ +L L L+ + LL Q +TV DVSFN L
Sbjct: 57 LTQLNLDRC---ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 276 GSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPLACL 330
++ + L++L + N L P + PKLE + + N P L
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLL 168
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 7/115 (6%)
Query: 220 LANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQ----VTVFDVSFNNLV 275
L N D C LTK+ +L L L+ + LL Q +TV DVSFN L
Sbjct: 57 LTQLNLDRC---ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 276 GSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPLACL 330
++ + L++L + N L P + PKLE + + N P L
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLL 168
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
Query: 220 LANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQ----VTVFDVSFNNLV 275
L N D C LTK+ +L L L+ + LL Q +TV DVSFN L
Sbjct: 57 LTQLNLDRC---ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 276 GSLP-ESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPLACL 330
SLP ++ + L++L + N L P + PKLE + + N P L
Sbjct: 114 -SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLL 168
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 7/115 (6%)
Query: 220 LANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQ----VTVFDVSFNNLV 275
L N D C LTK+ +L L L+ + LL Q +TV DVSFN L
Sbjct: 58 LTQLNLDRC---ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 114
Query: 276 GSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPLACL 330
++ + L++L + N L P + PKLE + + N P L
Sbjct: 115 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 169
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 7/115 (6%)
Query: 220 LANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQ----VTVFDVSFNNLV 275
L N D C LTK+ +L L L+ + LL Q +TV DVSFN L
Sbjct: 57 LTQLNLDRC---ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 276 GSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPLACL 330
++ + L++L + N L P + PKLE + + N P L
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Query: 246 ANAKLKGCLLKDIGLLNQVTVFDVSFNNL--VGSLPESMGNMKSLEQLNVAHNNLSGAIP 303
+N L + ++ G L ++ + N L + + E MKSL+QL+++ N++S
Sbjct: 332 SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391
Query: 304 NSICCLPK-LENFTYSYNFFCTEPLACL--KLKVKDDRQNCIPNRPFQRSPMEC 354
C K L + S N CL ++KV D N I + P Q +E
Sbjct: 392 KGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEA 445
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 263 QVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSI 306
++ V D+ +N + S+P+ + +++L++LNVA N L ++P+ I
Sbjct: 422 RIKVLDLH-SNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGI 463
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 87/213 (40%), Gaps = 34/213 (15%)
Query: 137 DSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDL--KLDA 194
D+F++++ L L +S N LPSL L++ F+ +P+ F+ KL
Sbjct: 53 DTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLEL-FDNRLTTVPTQAFEYLSKLRE 111
Query: 195 LFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCL 254
L+L NN S+P+ N S+ L S G +N L L C
Sbjct: 112 LWLRNNPI-ESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVN---LRYLNLGMCN 167
Query: 255 LKDI---GLLNQVTVFDVSFNNL-----------------------VGSLPE-SMGNMKS 287
LKDI L ++ ++S N L V ++ + ++KS
Sbjct: 168 LKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKS 227
Query: 288 LEQLNVAHNNLSGAIPNSICCLPKLENFTYSYN 320
LE+LN++HNNL + L +LE ++N
Sbjct: 228 LEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 82/204 (40%), Gaps = 29/204 (14%)
Query: 118 LQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFN 177
L L LF NR +F + L EL + NN +PSL+ LD+
Sbjct: 85 LNTLELF---DNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGEL 141
Query: 178 QFEGEIPSAVFDLKLDALFLNNNKFT-SSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKM 236
+ I A F+ ++ +LN +PN + L L+ N D P S +
Sbjct: 142 KRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGL 201
Query: 237 AGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHN 296
+L ++ L +A++ T+ +F++L KSLE+LN++HN
Sbjct: 202 T-SLRKLWLMHAQV-------------ATIERNAFDDL-----------KSLEELNLSHN 236
Query: 297 NLSGAIPNSICCLPKLENFTYSYN 320
NL + L +LE ++N
Sbjct: 237 NLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Query: 232 SLTKMAGTLNEIILANAKLKGCLLKDIGLLNQ----VTVFDVSFNNLVGSLP-ESMGNMK 286
LTK+ +L L L+ + LL Q +TV DVSFN L SLP ++ +
Sbjct: 66 ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLG 124
Query: 287 SLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPLACL 330
L++L + N L P + PKLE + + N P L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Query: 232 SLTKMAGTLNEIILANAKLKGCLLKDIGLLNQ----VTVFDVSFNNLVGSLP-ESMGNMK 286
LTK+ +L L L+ + LL Q +TV DVSFN L SLP ++ +
Sbjct: 66 ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLG 124
Query: 287 SLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPLACL 330
L++L + N L P + PKLE + + N P L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Query: 232 SLTKMAGTLNEIILANAKLKGCLLKDIGLLNQ----VTVFDVSFNNLVGSLP-ESMGNMK 286
LTK+ +L L L+ + LL Q +TV DVSFN L SLP ++ +
Sbjct: 66 ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLG 124
Query: 287 SLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPLACL 330
L++L + N L P + PKLE + + N P L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 92/209 (44%), Gaps = 27/209 (12%)
Query: 118 LQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFN 177
L L +SN+ P N+ L LD+S+N+ S SV+ L +L+ L N
Sbjct: 150 LTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 205
Query: 178 QFEGEIPSAVFDLKLDALFLNNNKFT-----SSLPNNIGNSPVSVLVLANNNFDSCLPPS 232
Q P + LD L LN N+ +SL N ++ L LANN + P S
Sbjct: 206 QISDITPLGILT-NLDELSLNGNQLKDIGTLASLTN------LTDLDLANNQISNLAPLS 258
Query: 233 -LTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQL 291
LTK L E+ L ++ + + L +T +++ N L P + N+K+L L
Sbjct: 259 GLTK----LTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYL 310
Query: 292 NVAHNNLSGAIPNSICCLPKLENFTYSYN 320
+ NN+S P + L KL+ +S N
Sbjct: 311 TLYFNNISDISP--VSSLTKLQRLFFSNN 337
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 85/188 (45%), Gaps = 25/188 (13%)
Query: 139 FRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLKLDALFLN 198
N+ L LD+S+N+ S SV+ L +L+ L NQ P + LD L LN
Sbjct: 168 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILT-NLDELSLN 224
Query: 199 NNKFT-----SSLPNNIGNSPVSVLVLANNNFDSCLPPS-LTKMAGTLNEIILANAKLKG 252
N+ +SL N ++ L LANN + P S LTK L E+ L ++
Sbjct: 225 GNQLKDIGTLASLTN------LTDLDLANNQISNLAPLSGLTK----LTELKLGANQISN 274
Query: 253 CLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKL 312
+ + L +T +++ N L P + N+K+L L + NN+S P + L KL
Sbjct: 275 --ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKL 328
Query: 313 ENFTYSYN 320
+ +S N
Sbjct: 329 QRLFFSNN 336
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 77/188 (40%), Gaps = 18/188 (9%)
Query: 148 LDVSNN--QFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLKLDALFLNNNKFTSS 205
LD+S N F GC SLK+LD+ FN G I + L L+ L + F S
Sbjct: 376 LDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN---GVITMSSNFLGLEQL--EHLDFQHS 430
Query: 206 LPNNIGNSPVSVLVLANNNFDSCLPPSLTKMA--------GTLNEIILANAKLKGCLLKD 257
N S SV + N + + T++A +L + +A + L D
Sbjct: 431 --NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 488
Query: 258 I-GLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFT 316
I L +T D+S L P + ++ SL+ LN++HNN CL L+
Sbjct: 489 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 548
Query: 317 YSYNFFCT 324
YS N T
Sbjct: 549 YSLNHIMT 556
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 282 MGNMKSLEQLNVAHNNL-SGAIPNSICCLPKLENFTYSYNFFCTEPLACLKLKV 334
+G++K+L++LNVAHN + S +P L LE+ S N + + C L+V
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN--KIQSIYCTDLRV 195
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 16/187 (8%)
Query: 119 QDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNN-QFSGCFPSVVLCLPSLKFLDIRFN 177
++L + ++SN G +F + LL +LD+S+N Q P+ L L L +
Sbjct: 55 RNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRC 114
Query: 178 QFEGEIPSAVFDL-KLDALFLNNNKFTSSLPNN----IGNSPVSVLVLANNNFDSCLPPS 232
+ P L L L+L +N +LP+N +GN ++ L L N S +P
Sbjct: 115 GLQELGPGLFRGLAALQYLYLQDNNL-QALPDNTFRDLGN--LTHLFLHGNRIPS-VPEH 170
Query: 233 LTKMAGTLNEIILAN---AKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLE 289
+ +L+ ++L A++ +D+G L + +F NNL E + ++SL+
Sbjct: 171 AFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFA---NNLSMLPAEVLVPLRSLQ 227
Query: 290 QLNVAHN 296
L + N
Sbjct: 228 YLRLNDN 234
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 77/188 (40%), Gaps = 18/188 (9%)
Query: 148 LDVSNN--QFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLKLDALFLNNNKFTSS 205
LD+S N F GC SLK+LD+ FN G I + L L+ L + F S
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN---GVITMSSNFLGLEQ--LEHLDFQHS 406
Query: 206 LPNNIGNSPVSVLVLANNNFDSCLPPSLTKMA--------GTLNEIILANAKLKGCLLKD 257
N S SV + N + + T++A +L + +A + L D
Sbjct: 407 --NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464
Query: 258 I-GLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFT 316
I L +T D+S L P + ++ SL+ LN++HNN CL L+
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 524
Query: 317 YSYNFFCT 324
YS N T
Sbjct: 525 YSLNHIMT 532
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 282 MGNMKSLEQLNVAHNNL-SGAIPNSICCLPKLENFTYSYNFFCTEPLACLKLKV 334
+G++K+L++LNVAHN + S +P L LE+ S N + + C L+V
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN--KIQSIYCTDLRV 171
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 85/212 (40%), Gaps = 18/212 (8%)
Query: 124 FHINSNRFCGTIPDSFRNMQLLFELDVSNN--QFSGCFPSVVLCLPSLKFLDIRFNQFEG 181
+ SN+ F + L +L +S+N F GC SLK+LD+ FN G
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN---G 89
Query: 182 EIPSAVFDLKLDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMA---- 237
I + L L+ L + F S N S SV + N + + T++A
Sbjct: 90 VITMSSNFLGLEQL--EHLDFQHS--NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145
Query: 238 ----GTLNEIILANAKLKGCLLKDI-GLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLN 292
+L + +A + L DI L +T D+S L P + ++ SL+ LN
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205
Query: 293 VAHNNLSGAIPNSICCLPKLENFTYSYNFFCT 324
++HNN CL L+ YS N T
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 118 LQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFN 177
L++L + N+ F + L EL + NQ P V L L +L + +N
Sbjct: 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143
Query: 178 QFEGEIPSAVFD--LKLDALFLNNNKF 202
+ + +P VFD L L L NN+
Sbjct: 144 ELQS-LPKGVFDKLTSLKELRLYNNQL 169
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 67/153 (43%), Gaps = 8/153 (5%)
Query: 104 QANIAGTLPEK-LGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSV 162
Q+N +LP K L L L ++N N+ F+ ++ L L V++N+ V
Sbjct: 45 QSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGV 104
Query: 163 VLCLPSLKFLDIRFNQFEGEIPSAVFD--LKLDALFLNNNKFTSSLPNNIGNSPVSV--L 218
L +L L + NQ + +P VFD KL L L N+ SLP + + S+ L
Sbjct: 105 FDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKEL 162
Query: 219 VLANNNFDSCLPPSLTKMAGTLNEIILANAKLK 251
L NN + K+ L + L N +LK
Sbjct: 163 RLYNNQLKRVPEGAFDKLT-ELKTLKLDNNQLK 194
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 69/157 (43%), Gaps = 24/157 (15%)
Query: 145 LFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFD--LKLDALFLNNNKF 202
L L+++ N S L L+ LD+ N+ E ++ + + ++L+ NK+
Sbjct: 383 LLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKY 442
Query: 203 TSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLN 262
L L+ ++F L PSL ++ L + L N + + L
Sbjct: 443 ---------------LQLSTSSF--ALVPSLQRLM--LRRVALKNVDISPSPFRP---LR 480
Query: 263 QVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLS 299
+T+ D+S NN+ + + +++LE L+ HNNL+
Sbjct: 481 NLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLA 517
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 15/146 (10%)
Query: 210 IGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDI-GLLNQVTVFD 268
+GNS + L L++N P + G L ++L NA+L L + + L+ ++ +
Sbjct: 168 LGNSSLRKLDLSSNPLKE-FSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQN 226
Query: 269 VSF--NNLVGSLPESMGNMK--SLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYN---- 320
+S N L+ + + +K +L QL++++NNL S LP L + YN
Sbjct: 227 LSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQR 286
Query: 321 -----FFCTEPLACLKLKVKDDRQNC 341
F+ L L LK +Q+
Sbjct: 287 LSPRSFYGLSNLRYLSLKRAFTKQSV 312
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 85/188 (45%), Gaps = 25/188 (13%)
Query: 139 FRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLKLDALFLN 198
N+ L LD+S+N+ S SV+ L +L+ L NQ P + LD L LN
Sbjct: 172 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILT-NLDELSLN 228
Query: 199 NNKFT-----SSLPNNIGNSPVSVLVLANNNFDSCLPPS-LTKMAGTLNEIILANAKLKG 252
N+ +SL N ++ L LANN + P S LTK L E+ L ++
Sbjct: 229 GNQLKDIGTLASLTN------LTDLDLANNQISNLAPLSGLTK----LTELKLGANQISN 278
Query: 253 CLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKL 312
+ + L +T +++ N L P + N+K+L L + NN+S P + L KL
Sbjct: 279 --ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKL 332
Query: 313 ENFTYSYN 320
+ ++ N
Sbjct: 333 QRLFFANN 340
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 79/193 (40%), Gaps = 43/193 (22%)
Query: 115 LGLLQDLALFHINSNRF--CGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFL 172
LG+L +L +N N+ GT+ S N L +LD++NNQ S P + L L L
Sbjct: 216 LGILTNLDELSLNGNQLKDIGTLA-SLTN---LTDLDLANNQISNLAP--LSGLTKLTEL 269
Query: 173 DIRFNQFEGEIPSAVFDLKLDALFLNNNKFTSSLP-NNIGNSPVSVLVLANNNFDSCLP- 230
+ NQ P A L L LN N+ P +N+ N ++ L L NN P
Sbjct: 270 KLGANQISNISPLAGLT-ALTNLELNENQLEDISPISNLKN--LTYLTLYFNNISDISPV 326
Query: 231 PSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQ 290
SLTK L + AN K V DVS S+ N+ ++
Sbjct: 327 SSLTK----LQRLFFANNK----------------VSDVS----------SLANLTNINW 356
Query: 291 LNVAHNNLSGAIP 303
L+ HN +S P
Sbjct: 357 LSAGHNQISDLTP 369
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 93/209 (44%), Gaps = 28/209 (13%)
Query: 118 LQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFN 177
L L + +SN+ P N+ L LD+S+N+ S SV+ L +L+ L N
Sbjct: 150 LTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 205
Query: 178 QFEGEIPSAVFDLKLDALFLNNNKFT-----SSLPNNIGNSPVSVLVLANNNFDSCLPPS 232
Q P + LD L LN N+ +SL N ++ L LANN + P S
Sbjct: 206 QISDITPLGILT-NLDELSLNGNQLKDIGTLASLTN------LTDLDLANNQISNLAPLS 258
Query: 233 -LTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQL 291
LTK L E+ L ++ + + L +T +++ N L P + N+K+L L
Sbjct: 259 GLTK----LTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYL 310
Query: 292 NVAHNNLSGAIPNSICCLPKLENFTYSYN 320
+ NN+S P + L KL+ + YN
Sbjct: 311 TLYFNNISDISP--VSSLTKLQRL-FFYN 336
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 58/126 (46%), Gaps = 13/126 (10%)
Query: 115 LGLLQDLALFHINSNRF--CGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFL 172
LG+L +L +N N+ GT+ S N L +LD++NNQ S P + L L L
Sbjct: 213 LGILTNLDELSLNGNQLKDIGTLA-SLTN---LTDLDLANNQISNLAP--LSGLTKLTEL 266
Query: 173 DIRFNQFEGEIPSAVFDLKLDALFLNNNKFTSSLP-NNIGNSPVSVLVLANNNFDSCLP- 230
+ NQ P A L L LN N+ P +N+ N ++ L L NN P
Sbjct: 267 KLGANQISNISPLAGLT-ALTNLELNENQLEDISPISNLKN--LTYLTLYFNNISDISPV 323
Query: 231 PSLTKM 236
SLTK+
Sbjct: 324 SSLTKL 329
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 128 SNRFCGTIPDS-FRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSA 186
S F G+I F N+ L LD+S N L LP+LK L + NQ + +P
Sbjct: 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDG 389
Query: 187 VFD--LKLDALFLNNNKFTSSLP 207
+FD L ++L+ N + S P
Sbjct: 390 IFDRLTSLQKIWLHTNPWDCSCP 412
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 83/200 (41%), Gaps = 20/200 (10%)
Query: 120 DLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFN-- 177
D L + +N D F+ +Q L+ L + NN+ S L L+ L I N
Sbjct: 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114
Query: 178 -QFEGEIPSAVFDLKLDALFLNN--NKFTSSLPN----NIGNSPVSVLVLANNNFDSC-- 228
+ +PS++ +L++ + S L N +G +P+ FD
Sbjct: 115 VEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKL 174
Query: 229 --LPPSLTKMAG-------TLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLP 279
L S K+ G TLNE+ L + K++ L+D+ +++ + N +
Sbjct: 175 NYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN 234
Query: 280 ESMGNMKSLEQLNVAHNNLS 299
S+ + +L +L++ +N LS
Sbjct: 235 GSLSFLPTLRELHLDNNKLS 254
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 92 PDCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVS 151
P +T +D NQ + +P++L + L L +++NR SF NM L L +S
Sbjct: 30 PRDVTELYLDGNQFTL---VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86
Query: 152 NNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFD 189
N+ P L SL+ L + N +P F+
Sbjct: 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFN 123
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 92/209 (44%), Gaps = 28/209 (13%)
Query: 118 LQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFN 177
L L +SN+ P N+ L LD+S+N+ S SV+ L +L+ L N
Sbjct: 150 LTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 205
Query: 178 QFEGEIPSAVFDLKLDALFLNNNKFT-----SSLPNNIGNSPVSVLVLANNNFDSCLPPS 232
Q P + LD L LN N+ +SL N ++ L LANN + P S
Sbjct: 206 QISDITPLGILT-NLDELSLNGNQLKDIGTLASLTN------LTDLDLANNQISNLAPLS 258
Query: 233 -LTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQL 291
LTK L E+ L ++ + + L +T +++ N L P + N+K+L L
Sbjct: 259 GLTK----LTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYL 310
Query: 292 NVAHNNLSGAIPNSICCLPKLENFTYSYN 320
+ NN+S P + L KL+ + YN
Sbjct: 311 TLYFNNISDISP--VSSLTKLQRL-FFYN 336
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 58/126 (46%), Gaps = 13/126 (10%)
Query: 115 LGLLQDLALFHINSNRF--CGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFL 172
LG+L +L +N N+ GT+ S N L +LD++NNQ S P + L L L
Sbjct: 213 LGILTNLDELSLNGNQLKDIGTLA-SLTN---LTDLDLANNQISNLAP--LSGLTKLTEL 266
Query: 173 DIRFNQFEGEIPSAVFDLKLDALFLNNNKFTSSLP-NNIGNSPVSVLVLANNNFDSCLP- 230
+ NQ P A L L LN N+ P +N+ N ++ L L NN P
Sbjct: 267 KLGANQISNISPLAGLT-ALTNLELNENQLEDISPISNLKN--LTYLTLYFNNISDISPV 323
Query: 231 PSLTKM 236
SLTK+
Sbjct: 324 SSLTKL 329
>pdb|2RHQ|A Chain A, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
pdb|2RHS|A Chain A, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
pdb|2RHS|C Chain C, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
Length = 294
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 56 FWKLSITSDPNGFTSNWCGPNVCNYTG--VYCAPAPDDPDCLTVAGIDLNQAN--IAGTL 111
F + S+ D + F G NVC +TG P+ L +AG D N+ + G
Sbjct: 199 FTEPSVEVDVSCFKCKGKGCNVCKHTGWIEILGAGMVHPNVLEMAGFDSNEYSGFAFGMG 258
Query: 112 PEKLGLL----QDLALFHINSNRF 131
P+++ +L +D+ F+ N RF
Sbjct: 259 PDRIAMLKYGIEDIRYFYTNDVRF 282
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 85/188 (45%), Gaps = 26/188 (13%)
Query: 139 FRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLKLDALFLN 198
N+ L LD+S+N+ S SV+ L +L+ L NQ P + LD L LN
Sbjct: 173 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILT-NLDELSLN 229
Query: 199 NNKFT-----SSLPNNIGNSPVSVLVLANNNFDSCLPPS-LTKMAGTLNEIILANAKLKG 252
N+ +SL N ++ L LANN + P S LTK L E+ L ++
Sbjct: 230 GNQLKDIGTLASLTN------LTDLDLANNQISNLAPLSGLTK----LTELKLGANQISN 279
Query: 253 CLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKL 312
+ + L +T +++ N L P + N+K+L L + NN+S P + L KL
Sbjct: 280 --ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKL 333
Query: 313 ENFTYSYN 320
+ + YN
Sbjct: 334 QRL-FFYN 340
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 58/126 (46%), Gaps = 13/126 (10%)
Query: 115 LGLLQDLALFHINSNRF--CGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFL 172
LG+L +L +N N+ GT+ S N L +LD++NNQ S P + L L L
Sbjct: 217 LGILTNLDELSLNGNQLKDIGTLA-SLTN---LTDLDLANNQISNLAP--LSGLTKLTEL 270
Query: 173 DIRFNQFEGEIPSAVFDLKLDALFLNNNKFTSSLP-NNIGNSPVSVLVLANNNFDSCLP- 230
+ NQ P A L L LN N+ P +N+ N ++ L L NN P
Sbjct: 271 KLGANQISNISPLAGLT-ALTNLELNENQLEDISPISNLKN--LTYLTLYFNNISDISPV 327
Query: 231 PSLTKM 236
SLTK+
Sbjct: 328 SSLTKL 333
>pdb|3FF1|A Chain A, Structure Of Glucose 6-Phosphate Isomerase From
Staphylococcus Aureus
pdb|3FF1|B Chain B, Structure Of Glucose 6-Phosphate Isomerase From
Staphylococcus Aureus
Length = 446
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 272 NNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPLAC 329
N L G + + N K+ E +AH + G +PN + +P+L+ T+ Y + E LAC
Sbjct: 349 NYLAGKTIDEV-NTKAFEGTLLAHTD--GGVPNXVVNIPQLDEETFGYVVYFFE-LAC 402
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 85/188 (45%), Gaps = 26/188 (13%)
Query: 139 FRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLKLDALFLN 198
N+ L LD+S+N+ S SV+ L +L+ L NQ P + LD L LN
Sbjct: 168 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILT-NLDELSLN 224
Query: 199 NNKFT-----SSLPNNIGNSPVSVLVLANNNFDSCLPPS-LTKMAGTLNEIILANAKLKG 252
N+ +SL N ++ L LANN + P S LTK L E+ L ++
Sbjct: 225 GNQLKDIGTLASLTN------LTDLDLANNQISNLAPLSGLTK----LTELKLGANQISN 274
Query: 253 CLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKL 312
+ + L +T +++ N L P + N+K+L L + NN+S P + L KL
Sbjct: 275 --ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKL 328
Query: 313 ENFTYSYN 320
+ + YN
Sbjct: 329 QRL-FFYN 335
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 58/126 (46%), Gaps = 13/126 (10%)
Query: 115 LGLLQDLALFHINSNRF--CGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFL 172
LG+L +L +N N+ GT+ S N L +LD++NNQ S P + L L L
Sbjct: 212 LGILTNLDELSLNGNQLKDIGTLA-SLTN---LTDLDLANNQISNLAP--LSGLTKLTEL 265
Query: 173 DIRFNQFEGEIPSAVFDLKLDALFLNNNKFTSSLP-NNIGNSPVSVLVLANNNFDSCLP- 230
+ NQ P A L L LN N+ P +N+ N ++ L L NN P
Sbjct: 266 KLGANQISNISPLAGLT-ALTNLELNENQLEDISPISNLKN--LTYLTLYFNNISDISPV 322
Query: 231 PSLTKM 236
SLTK+
Sbjct: 323 SSLTKL 328
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 116 GLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIR 175
G+ + ++ NR P F + L LD+ NNQ + V L L L +
Sbjct: 27 GIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86
Query: 176 FNQFEGEIPSAVFD--LKLDALFLNNNKF 202
NQ + IP FD L ++L NN +
Sbjct: 87 DNQLK-SIPRGAFDNLRSLTHIWLLNNPW 114
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 135 IPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFD--LKL 192
+PD F ++ L LD+S Q P+ L SL+ L++ NQ + +P +FD L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSL 520
Query: 193 DALFLNNNKFTSSLP 207
++L+ N + S P
Sbjct: 521 QKIWLHTNPWDCSCP 535
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 282 MGNMKSLEQLNVAHNNL-SGAIPNSICCLPKLENFTYSYNFFCTEPLACLKLKV 334
+G++K+L++LNVAHN + S +P L LE+ S N + + C L+V
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN--KIQSIYCTDLRV 171
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 36/57 (63%), Gaps = 4/57 (7%)
Query: 263 QVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSY 319
+V V D+ NN + S+P+ + ++++L++LNVA N L ++P+ + +L + Y +
Sbjct: 451 KVKVLDLH-NNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGV--FDRLTSLQYIW 503
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 99 GIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFS-- 156
+ L+Q +I+ + L +L + ++ NR F Q L LDVS+N+
Sbjct: 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI 115
Query: 157 GCFPSVVLCLPSLKFLDIRFNQFE 180
C P + SL+ LD+ FN F+
Sbjct: 116 SCCP-----MASLRHLDLSFNDFD 134
>pdb|3IFS|A Chain A, 2.0 Angstrom Resolution Crystal Structure Of
Glucose-6-Phosphate Isomerase (Pgi) From Bacillus
Anthracis.
pdb|3IFS|B Chain B, 2.0 Angstrom Resolution Crystal Structure Of
Glucose-6-Phosphate Isomerase (Pgi) From Bacillus
Anthracis.
pdb|3IFS|C Chain C, 2.0 Angstrom Resolution Crystal Structure Of
Glucose-6-Phosphate Isomerase (Pgi) From Bacillus
Anthracis.
pdb|3IFS|D Chain D, 2.0 Angstrom Resolution Crystal Structure Of
Glucose-6-Phosphate Isomerase (Pgi) From Bacillus
Anthracis.
pdb|3IFS|E Chain E, 2.0 Angstrom Resolution Crystal Structure Of
Glucose-6-Phosphate Isomerase (Pgi) From Bacillus
Anthracis.
pdb|3IFS|F Chain F, 2.0 Angstrom Resolution Crystal Structure Of
Glucose-6-Phosphate Isomerase (Pgi) From Bacillus
Anthracis
Length = 453
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 284 NMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPLAC 329
N K+ E +AH++ G +PN I +P+L +T+ Y + E AC
Sbjct: 366 NTKAYEGTLLAHSD--GGVPNLIVNIPELNEYTFGYLVYFFEK-AC 408
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 118 LQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFN 177
L +L ++ N+ F + L ELD+S NQ V L LK L + N
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191
Query: 178 QFEGEIPSAVFD--LKLDALFLNNNKFTSSLP 207
Q + +P VFD L ++L++N + + P
Sbjct: 192 QLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 68/135 (50%), Gaps = 12/135 (8%)
Query: 113 EKLGLLQDLALFHINSNRFCGTIPDS-FRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKF 171
+KL L++L L N+ ++PD F + L L++++NQ V L +L
Sbjct: 106 DKLTNLKELVLVE---NQL-QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTE 161
Query: 172 LDIRFNQFEGEIPSAVFD--LKLDALFLNNNKFTSSLPNNIGNSPVSV--LVLANNNFDS 227
LD+ +NQ + +P VFD +L L L N+ S+P+ + + S+ + L +N +D
Sbjct: 162 LDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNPWD- 218
Query: 228 CLPPSLTKMAGTLNE 242
C P + ++ +N+
Sbjct: 219 CTCPGIRYLSEWINK 233
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 9/105 (8%)
Query: 269 VSFNNLVGSLPESM-GNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEP- 326
V N + SLP+ + + +L LN+AHN L L L SYN + P
Sbjct: 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174
Query: 327 -----LACLK-LKVKDDRQNCIPNRPFQR-SPMECKTFYSHPVDC 364
L LK L++ ++ +P+ F R + ++ + +P DC
Sbjct: 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 219
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 113 EKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFL 172
+KL L L L+H N+ F + L LD+ NNQ V L LK L
Sbjct: 130 DKLTNLTYLYLYH---NQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQL 186
Query: 173 DIRFNQFEGEIPSAVFD 189
+ NQ + +P VFD
Sbjct: 187 SLNDNQLKS-VPDGVFD 202
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 136 PDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFD 189
P +F + L +D+SNNQ S P L SL L + N+ E+P ++F+
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFE 101
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 91/236 (38%), Gaps = 36/236 (15%)
Query: 91 DPDCLTVAGI--------DLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNM 142
DPD T AG+ DL+ + L+DL + ++ N+ ++F +
Sbjct: 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL 313
Query: 143 QLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDL--KLDALFLNNN 200
L L++S N + S LP + ++D++ N I F KL L L +N
Sbjct: 314 DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI-AIIQDQTFKFLEKLQTLDLRDN 372
Query: 201 KFTS-----SLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLL 255
T+ S+P+ + L+ N + +LT L+E L N + LL
Sbjct: 373 ALTTIHFIPSIPD---------IFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLL 423
Query: 256 K----DIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSIC 307
+ I +LNQ S + P SLEQL + N L A +C
Sbjct: 424 RVPHLQILILNQNRFSSCSGDQTPSENP-------SLEQLFLGENMLQLAWETELC 472
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 136 PDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFD 189
P +F + L +D+SNNQ S P L SL L + N+ E+P ++F+
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFE 101
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 282 MGNMKSLEQLNVAHNNL-SGAIPNSICCLPKLENFTYSYN----FFCTE 325
+G++K+L++LNVAHN + S +P L LE+ S N +CT+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 170
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 282 MGNMKSLEQLNVAHNNL-SGAIPNSICCLPKLENFTYSYN----FFCTE 325
+G++K+L++LNVAHN + S +P L LE+ S N +CT+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 282 MGNMKSLEQLNVAHNNL-SGAIPNSICCLPKLENFTYSYN----FFCTE 325
+G++K+L++LNVAHN + S +P L LE+ S N +CT+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 169
>pdb|2TPL|A Chain A, Tyrosine Phenol-lyase From Citrobacter Intermedius Complex
With 3-(4'- Hydroxyphenyl)propionic Acid,
Pyridoxal-5'-phosphate And Cs+ Ion
pdb|2TPL|B Chain B, Tyrosine Phenol-lyase From Citrobacter Intermedius Complex
With 3-(4'- Hydroxyphenyl)propionic Acid,
Pyridoxal-5'-phosphate And Cs+ Ion
Length = 456
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 273 NLVGSLPESMGNMKSLEQLNVAHN 296
NL G P SM NM+++ +L AH
Sbjct: 185 NLAGGQPVSMANMRAVRELTAAHG 208
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 282 MGNMKSLEQLNVAHNNL-SGAIPNSICCLPKLENFTYSYN----FFCTE 325
+G++K+L++LNVAHN + S +P L LE+ S N +CT+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 170
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 282 MGNMKSLEQLNVAHNNL-SGAIPNSICCLPKLENFTYSYN----FFCTE 325
+G++K+L++LNVAHN + S +P L LE+ S N +CT+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 169
>pdb|1TPL|A Chain A, The Three-Dimensional Structure Of Tyrosine Phenol-Lyase
pdb|1TPL|B Chain B, The Three-Dimensional Structure Of Tyrosine Phenol-Lyase
Length = 456
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 273 NLVGSLPESMGNMKSLEQLNVAHN 296
NL G P SM NM+++ +L AH
Sbjct: 185 NLAGGQPVSMANMRAVRELTAAHG 208
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 271 FNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCL-PKLENFTYSYN 320
+N L G LP + G+ L LN+A+N ++ IP + C ++EN ++++N
Sbjct: 339 YNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHN 387
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 107/278 (38%), Gaps = 71/278 (25%)
Query: 89 PDDPDCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFEL 148
P+ P L +D N LP LL+ L + SN +P+ +N L +
Sbjct: 107 PELPQSLKSLLVDNNNLKALSDLP---PLLEYLGV----SNNQLEKLPE-LQNSSFLKII 158
Query: 149 DVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLKLDALFLNNNKFTS--SL 206
DV NN P + PSL+F+ NQ E E+P L A++ +NN L
Sbjct: 159 DVDNNSLKK-LPDLP---PSLEFIAAGNNQLE-ELPELQNLPFLTAIYADNNSLKKLPDL 213
Query: 207 P---------NNI-------GNSPVSVLVLANNNFDSCLP---PSLTKMAGTLNEIILAN 247
P NNI N P + A+NN LP PSL +
Sbjct: 214 PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEAL----------- 262
Query: 248 AKLKGCLLKDIGLLNQ-VTVFDVSFNNLVG--SLPESMGNMK--------------SLEQ 290
++ L D+ L Q +T DVS N G LP ++ + SLE+
Sbjct: 263 -NVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEE 321
Query: 291 LNVAHNNLSG--AIPNSICCLPKLENFTYSYNFFCTEP 326
LNV++N L A+P P+LE S+N P
Sbjct: 322 LNVSNNKLIELPALP------PRLERLIASFNHLAEVP 353
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 7/129 (5%)
Query: 118 LQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFN 177
L L ++ N+ F + L L++S NQ V L LK L + N
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110
Query: 178 QFEGEIPSAVFD--LKLDALFLNNNKFTSSLPNNIGNSPVSV--LVLANNNFDSCLPPSL 233
Q + +P VFD +L L L N+ S+P+ + + S+ + L +N +D C P +
Sbjct: 111 QLQ-SLPDGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNPWD-CTCPGI 167
Query: 234 TKMAGTLNE 242
++ +N+
Sbjct: 168 RYLSEWINK 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,742,273
Number of Sequences: 62578
Number of extensions: 469438
Number of successful extensions: 991
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 726
Number of HSP's gapped (non-prelim): 195
length of query: 406
length of database: 14,973,337
effective HSP length: 101
effective length of query: 305
effective length of database: 8,652,959
effective search space: 2639152495
effective search space used: 2639152495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)