Query 015481
Match_columns 406
No_of_seqs 447 out of 4041
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 06:43:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015481.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015481hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.2E-36 4.7E-41 327.9 27.0 286 49-343 29-345 (968)
2 PLN00113 leucine-rich repeat r 100.0 3.6E-30 7.8E-35 279.4 19.6 227 97-324 142-370 (968)
3 KOG4194 Membrane glycoprotein 99.9 2.7E-28 5.9E-33 232.8 1.3 252 93-346 123-408 (873)
4 KOG4194 Membrane glycoprotein 99.9 1.6E-26 3.5E-31 220.7 6.7 249 95-346 78-333 (873)
5 KOG0444 Cytoskeletal regulator 99.9 1.3E-25 2.8E-30 216.1 0.5 242 93-342 101-374 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 7E-26 1.5E-30 217.9 -1.9 248 93-346 76-355 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 3E-25 6.4E-30 203.8 -1.0 262 94-363 182-541 (565)
8 KOG0472 Leucine-rich repeat pr 99.9 1.4E-25 2.9E-30 206.1 -8.6 241 97-348 47-293 (565)
9 PRK15370 E3 ubiquitin-protein 99.9 3.7E-21 8.1E-26 198.6 14.4 243 96-364 179-429 (754)
10 KOG0618 Serine/threonine phosp 99.8 2.2E-22 4.9E-27 201.7 -0.9 240 93-341 239-487 (1081)
11 PRK15387 E3 ubiquitin-protein 99.8 5.4E-20 1.2E-24 189.1 16.1 236 95-365 222-460 (788)
12 PRK15387 E3 ubiquitin-protein 99.8 3.9E-20 8.6E-25 190.1 14.7 217 94-345 241-460 (788)
13 PRK15370 E3 ubiquitin-protein 99.8 2.5E-20 5.3E-25 192.5 11.6 224 95-344 199-429 (754)
14 PLN03210 Resistant to P. syrin 99.8 7.7E-19 1.7E-23 192.4 19.7 243 93-346 609-886 (1153)
15 PLN03210 Resistant to P. syrin 99.8 6.4E-18 1.4E-22 185.2 19.4 243 93-346 632-910 (1153)
16 KOG0617 Ras suppressor protein 99.8 1.5E-20 3.2E-25 154.6 -2.3 164 116-308 30-194 (264)
17 KOG0618 Serine/threonine phosp 99.8 2.5E-20 5.5E-25 187.1 -2.0 238 119-363 241-489 (1081)
18 cd00116 LRR_RI Leucine-rich re 99.8 2.1E-19 4.6E-24 170.8 3.7 229 95-324 23-292 (319)
19 KOG4237 Extracellular matrix p 99.8 2.7E-19 5.9E-24 164.5 3.7 247 95-341 67-357 (498)
20 cd00116 LRR_RI Leucine-rich re 99.8 2.2E-19 4.8E-24 170.6 3.0 247 99-346 2-294 (319)
21 KOG0617 Ras suppressor protein 99.8 3.7E-20 8E-25 152.3 -2.4 163 93-285 31-195 (264)
22 KOG4237 Extracellular matrix p 99.7 4.6E-19 9.9E-24 163.1 -3.8 256 105-366 56-362 (498)
23 PLN03150 hypothetical protein; 99.6 1.5E-15 3.2E-20 156.2 14.1 155 44-203 367-528 (623)
24 KOG0532 Leucine-rich repeat (L 99.5 1.7E-15 3.7E-20 145.6 -1.0 181 117-307 73-254 (722)
25 KOG0532 Leucine-rich repeat (L 99.5 2.6E-15 5.6E-20 144.3 -3.1 178 141-327 73-251 (722)
26 COG4886 Leucine-rich repeat (L 99.4 1.8E-13 3.8E-18 134.2 7.4 196 99-327 97-294 (394)
27 COG4886 Leucine-rich repeat (L 99.3 1.8E-12 3.8E-17 127.1 7.7 194 123-346 97-293 (394)
28 KOG1259 Nischarin, modulator o 99.2 2.5E-12 5.4E-17 115.2 1.7 128 215-349 286-418 (490)
29 PLN03150 hypothetical protein; 99.2 2.9E-11 6.3E-16 124.6 9.7 88 240-327 420-507 (623)
30 KOG1909 Ran GTPase-activating 99.2 2.8E-12 6.1E-17 117.1 1.3 238 94-343 29-311 (382)
31 KOG3207 Beta-tubulin folding c 99.2 3.3E-12 7.2E-17 119.7 1.8 203 141-345 119-341 (505)
32 PF14580 LRR_9: Leucine-rich r 99.2 4E-11 8.6E-16 102.5 5.5 96 239-337 43-147 (175)
33 KOG1909 Ran GTPase-activating 99.1 1.4E-11 3.1E-16 112.6 1.2 208 95-323 58-311 (382)
34 KOG1259 Nischarin, modulator o 99.1 3.1E-11 6.7E-16 108.3 1.7 122 239-364 285-413 (490)
35 KOG3207 Beta-tubulin folding c 99.1 2.5E-11 5.5E-16 113.9 0.4 207 116-327 118-343 (505)
36 KOG0531 Protein phosphatase 1, 99.0 2.2E-11 4.8E-16 120.0 -1.9 237 95-345 72-320 (414)
37 PF14580 LRR_9: Leucine-rich r 99.0 2.6E-10 5.6E-15 97.5 4.1 103 239-346 20-129 (175)
38 KOG0531 Protein phosphatase 1, 99.0 5E-11 1.1E-15 117.4 -0.7 81 95-180 95-175 (414)
39 PF13855 LRR_8: Leucine rich r 98.9 1.3E-09 2.8E-14 76.7 3.4 60 120-179 2-61 (61)
40 PF13855 LRR_8: Leucine rich r 98.9 1.3E-09 2.8E-14 76.7 3.1 60 263-322 2-61 (61)
41 KOG4658 Apoptotic ATPase [Sign 98.7 1.3E-08 2.8E-13 107.7 5.3 102 96-198 546-650 (889)
42 KOG4658 Apoptotic ATPase [Sign 98.7 2.1E-08 4.6E-13 106.2 5.8 129 93-224 521-653 (889)
43 COG5238 RNA1 Ran GTPase-activa 98.6 6.8E-09 1.5E-13 92.2 0.9 242 95-346 30-319 (388)
44 KOG1859 Leucine-rich repeat pr 98.6 9.4E-10 2E-14 109.3 -5.2 125 214-346 165-295 (1096)
45 KOG1859 Leucine-rich repeat pr 98.5 4.1E-09 8.8E-14 104.9 -3.9 124 239-366 165-295 (1096)
46 COG5238 RNA1 Ran GTPase-activa 98.4 7.8E-08 1.7E-12 85.6 0.6 212 94-326 57-319 (388)
47 KOG4579 Leucine-rich repeat (L 98.3 4E-08 8.7E-13 78.7 -2.2 59 239-299 78-136 (177)
48 PF08263 LRRNT_2: Leucine rich 98.2 1.4E-06 3E-11 56.3 4.0 39 48-86 2-43 (43)
49 KOG2982 Uncharacterized conser 98.2 2E-07 4.4E-12 84.0 -0.4 85 95-179 71-158 (418)
50 KOG2120 SCF ubiquitin ligase, 98.2 8.8E-08 1.9E-12 86.3 -3.5 174 145-320 187-373 (419)
51 PF12799 LRR_4: Leucine Rich r 98.2 1.6E-06 3.4E-11 56.2 2.8 36 263-299 2-37 (44)
52 KOG4579 Leucine-rich repeat (L 98.1 3.4E-07 7.3E-12 73.5 -0.8 85 260-346 51-139 (177)
53 PF12799 LRR_4: Leucine Rich r 98.1 3.5E-06 7.7E-11 54.6 3.6 37 287-324 2-38 (44)
54 PRK15386 type III secretion pr 98.1 1.4E-05 3E-10 77.0 8.2 135 115-272 48-187 (426)
55 KOG2120 SCF ubiquitin ligase, 97.9 3.6E-07 7.9E-12 82.4 -4.6 175 120-296 186-373 (419)
56 KOG2982 Uncharacterized conser 97.8 2E-06 4.3E-11 77.8 -1.5 84 260-345 197-292 (418)
57 KOG1644 U2-associated snRNP A' 97.8 4.2E-05 9.1E-10 65.6 5.5 99 238-339 42-149 (233)
58 KOG3665 ZYG-1-like serine/thre 97.6 4.3E-05 9.3E-10 79.4 4.3 114 229-344 139-264 (699)
59 PRK15386 type III secretion pr 97.6 0.00021 4.6E-09 68.9 8.6 138 139-297 48-188 (426)
60 KOG1644 U2-associated snRNP A' 97.5 0.00012 2.5E-09 63.0 4.7 103 240-346 21-129 (233)
61 KOG2739 Leucine-rich acidic nu 97.0 0.0003 6.6E-09 62.8 2.0 82 239-324 44-130 (260)
62 KOG2123 Uncharacterized conser 96.9 9.9E-05 2.1E-09 66.4 -1.9 93 239-336 20-123 (388)
63 KOG3665 ZYG-1-like serine/thre 96.9 0.00061 1.3E-08 71.0 3.3 36 167-202 122-160 (699)
64 KOG2739 Leucine-rich acidic nu 96.7 0.0012 2.6E-08 59.1 2.7 68 111-180 35-104 (260)
65 KOG2123 Uncharacterized conser 96.6 0.00012 2.6E-09 65.8 -3.7 89 93-185 17-106 (388)
66 PF13306 LRR_5: Leucine rich r 95.7 0.038 8.3E-07 44.5 6.7 78 96-176 13-90 (129)
67 PF00560 LRR_1: Leucine Rich R 95.6 0.005 1.1E-07 33.2 0.7 17 288-305 2-18 (22)
68 PF00560 LRR_1: Leucine Rich R 95.4 0.0065 1.4E-07 32.7 0.9 12 145-156 2-13 (22)
69 PF13306 LRR_5: Leucine rich r 95.2 0.06 1.3E-06 43.3 6.3 105 113-222 6-112 (129)
70 KOG4308 LRR-containing protein 94.5 0.00083 1.8E-08 67.0 -7.6 87 239-325 205-305 (478)
71 KOG4308 LRR-containing protein 94.5 0.00027 5.9E-09 70.4 -11.0 108 215-322 206-330 (478)
72 KOG0473 Leucine-rich repeat pr 93.7 0.0023 5.1E-08 56.3 -5.5 84 94-180 41-124 (326)
73 KOG0473 Leucine-rich repeat pr 93.5 0.002 4.4E-08 56.7 -6.2 82 239-323 43-124 (326)
74 KOG4341 F-box protein containi 93.3 0.0085 1.8E-07 57.2 -3.0 84 95-178 138-227 (483)
75 PF13504 LRR_7: Leucine rich r 93.1 0.063 1.4E-06 26.8 1.4 11 312-322 3-13 (17)
76 smart00370 LRR Leucine-rich re 91.4 0.16 3.5E-06 28.3 1.9 18 167-185 2-19 (26)
77 smart00369 LRR_TYP Leucine-ric 91.4 0.16 3.5E-06 28.3 1.9 18 167-185 2-19 (26)
78 smart00369 LRR_TYP Leucine-ric 90.3 0.28 6.2E-06 27.3 2.2 14 286-299 2-15 (26)
79 smart00370 LRR Leucine-rich re 90.3 0.28 6.2E-06 27.3 2.2 14 286-299 2-15 (26)
80 KOG3864 Uncharacterized conser 87.2 0.1 2.2E-06 45.3 -1.6 82 96-177 102-186 (221)
81 PF13516 LRR_6: Leucine Rich r 86.3 0.22 4.8E-06 27.2 0.0 16 286-301 2-17 (24)
82 KOG3864 Uncharacterized conser 84.3 0.22 4.7E-06 43.3 -0.9 33 286-318 151-184 (221)
83 KOG1947 Leucine rich repeat pr 81.2 1 2.2E-05 45.0 2.4 107 215-322 190-307 (482)
84 smart00364 LRR_BAC Leucine-ric 80.3 1.2 2.5E-05 25.0 1.3 17 331-347 3-19 (26)
85 KOG1947 Leucine rich repeat pr 75.4 2.1 4.6E-05 42.6 2.7 126 192-317 190-328 (482)
86 smart00365 LRR_SD22 Leucine-ri 75.1 2.2 4.9E-05 23.9 1.5 13 311-323 3-15 (26)
87 KOG3763 mRNA export factor TAP 74.0 2 4.4E-05 43.0 2.0 63 261-325 217-285 (585)
88 smart00368 LRR_RI Leucine rich 67.6 4.1 9E-05 23.1 1.6 13 311-323 3-15 (28)
89 KOG3763 mRNA export factor TAP 52.3 7.2 0.00016 39.2 1.3 60 142-203 217-283 (585)
90 KOG4242 Predicted myosin-I-bin 45.7 52 0.0011 32.7 5.9 109 215-323 356-481 (553)
91 TIGR00864 PCC polycystin catio 34.6 28 0.00061 42.0 2.6 32 125-156 1-32 (2740)
92 KOG4242 Predicted myosin-I-bin 30.5 42 0.0009 33.4 2.6 108 167-275 165-281 (553)
93 KOG4341 F-box protein containi 30.2 33 0.00071 33.6 1.9 246 93-340 162-436 (483)
94 TIGR00864 PCC polycystin catio 27.9 43 0.00094 40.6 2.6 32 268-299 1-32 (2740)
95 PF08113 CoxIIa: Cytochrome c 25.7 1.1E+02 0.0023 18.3 2.7 23 1-25 1-23 (34)
96 smart00367 LRR_CC Leucine-rich 22.7 61 0.0013 17.7 1.4 12 286-297 2-13 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.2e-36 Score=327.90 Aligned_cols=286 Identities=30% Similarity=0.465 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCC-CCCCCCcceeecCCCCCCCCCCcEEEEECCCCCccccCcccccCCCCCCEEEcC
Q 015481 49 KAYIALQFWKLSITSDPNGFTSNWC-GPNVCNYTGVYCAPAPDDPDCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHIN 127 (406)
Q Consensus 49 ~~~~~L~~~~~~~~~~~~~~~~~w~-~~~~c~w~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 127 (406)
+++.+|++||+++. ++.+...+|. ..++|.|.||+|+. ..+|+.|+|++|++.+.++..|..+++|+.|+++
T Consensus 29 ~~~~~l~~~~~~~~-~~~~~~~~w~~~~~~c~w~gv~c~~------~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls 101 (968)
T PLN00113 29 EELELLLSFKSSIN-DPLKYLSNWNSSADVCLWQGITCNN------SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLS 101 (968)
T ss_pred HHHHHHHHHHHhCC-CCcccCCCCCCCCCCCcCcceecCC------CCcEEEEEecCCCccccCChHHhCCCCCCEEECC
Confidence 56789999999984 5666678896 45789999999973 2478888888888877777777788888888888
Q ss_pred CCcCCccCCchhh-CCcCCceEecccccccccCchhhcCCCCCcEEEeecCcCCCCCchhhhccc-cCeeeccccccccC
Q 015481 128 SNRFCGTIPDSFR-NMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSS 205 (406)
Q Consensus 128 ~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~ 205 (406)
+|++++.+|..+. .+++|++|+|++|.+++.+|. ..+++|++|+|++|.+.+.+|..+..+. |++|++++|.+.+.
T Consensus 102 ~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 179 (968)
T PLN00113 102 NNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK 179 (968)
T ss_pred CCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc
Confidence 8887777776543 666677777766666654443 2345555555555555545555444444 55555555555444
Q ss_pred CCCCCCCCC-ccEEEcccccCCcCCchhHHhcc-----------------------cccceeeeccCCCcccChhhhccC
Q 015481 206 LPNNIGNSP-VSVLVLANNNFDSCLPPSLTKMA-----------------------GTLNEIILANAKLKGCLLKDIGLL 261 (406)
Q Consensus 206 ~~~~~~~~~-L~~L~l~~n~l~~~~p~~l~~l~-----------------------~~L~~L~l~~n~l~~~~~~~l~~l 261 (406)
+|..+.... |++|++++|.+.+.+|..+..+. .+|++|++++|++++.+|..++++
T Consensus 180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 259 (968)
T PLN00113 180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259 (968)
T ss_pred CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCC
Confidence 444443322 44555555544444444444444 045555555554444444444445
Q ss_pred CCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC----cCCCCCeeeC
Q 015481 262 NQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL----ACLKLKVKDD 337 (406)
Q Consensus 262 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~L~~L~l 337 (406)
++|++|+|++|++++.+|..+..+++|++|+|++|.+.+.+|..+..+++|+.|++++|.+++..| .+++|+.|++
T Consensus 260 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 339 (968)
T PLN00113 260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL 339 (968)
T ss_pred CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEEC
Confidence 555555555555544444445555555555555555554455555555555555555555544443 2345555555
Q ss_pred CCCCCC
Q 015481 338 RQNCIP 343 (406)
Q Consensus 338 ~~N~l~ 343 (406)
++|.++
T Consensus 340 ~~n~l~ 345 (968)
T PLN00113 340 WSNKFS 345 (968)
T ss_pred cCCCCc
Confidence 555554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=3.6e-30 Score=279.43 Aligned_cols=227 Identities=26% Similarity=0.463 Sum_probs=105.8
Q ss_pred EEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEeec
Q 015481 97 VAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRF 176 (406)
Q Consensus 97 l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 176 (406)
++.|+|++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..+..+++|++|+|++
T Consensus 142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 221 (968)
T PLN00113 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY 221 (968)
T ss_pred CCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcC
Confidence 33334444444344444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred CcCCCCCchhhhccc-cCeeeccccccccCCCCCCCCCC-ccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccC
Q 015481 177 NQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNSP-VSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCL 254 (406)
Q Consensus 177 N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~ 254 (406)
|.+.+.+|..+..+. |++|++++|.+.+.+|..++... |++|++++|.+.+.+|..+..+. +|++|++++|++.+.+
T Consensus 222 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~ 300 (968)
T PLN00113 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ-KLISLDLSDNSLSGEI 300 (968)
T ss_pred CccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhcc-CcCEEECcCCeeccCC
Confidence 444444444444444 44444444444444444443322 44444444444444444444444 4444444444444444
Q ss_pred hhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCc
Q 015481 255 LKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCT 324 (406)
Q Consensus 255 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 324 (406)
|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++
T Consensus 301 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~ 370 (968)
T PLN00113 301 PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG 370 (968)
T ss_pred ChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEe
Confidence 4444444444444444444444444444444444444444444444444444444444444444444443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=2.7e-28 Score=232.84 Aligned_cols=252 Identities=19% Similarity=0.215 Sum_probs=167.9
Q ss_pred CCCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEE
Q 015481 93 DCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFL 172 (406)
Q Consensus 93 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 172 (406)
..++++.|+|.+|.|+..-.+.+..++.|+.|||+.|.|+..--..|..-.++++|+|++|.|+......|..+.+|..|
T Consensus 123 ~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl 202 (873)
T KOG4194|consen 123 ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL 202 (873)
T ss_pred cccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheee
Confidence 35678888888888887666777777888888888888774333456665677777777777776666777777777777
Q ss_pred EeecCcCCCCCchhhhc-cc-cCeeeccccccccCCC------------------------CC-CCCCCccEEEcccccC
Q 015481 173 DIRFNQFEGEIPSAVFD-LK-LDALFLNNNKFTSSLP------------------------NN-IGNSPVSVLVLANNNF 225 (406)
Q Consensus 173 ~Ls~N~l~~~~p~~~~~-l~-L~~L~L~~n~l~~~~~------------------------~~-~~~~~L~~L~l~~n~l 225 (406)
.|+.|+++ .+|...++ ++ |+.|+|..|+|.-.-- .. ++..++++|++..|++
T Consensus 203 kLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 203 KLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred ecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchh
Confidence 77777777 55554444 55 7777777666642211 11 1123467788888887
Q ss_pred CcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchh
Q 015481 226 DSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNS 305 (406)
Q Consensus 226 ~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 305 (406)
...-..+++.++ .|+.|++++|.|...-++.+...++|+.|+|++|+|+..-+.+|..++.|++|+|++|.|...--..
T Consensus 282 ~~vn~g~lfgLt-~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~a 360 (873)
T KOG4194|consen 282 QAVNEGWLFGLT-SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGA 360 (873)
T ss_pred hhhhcccccccc-hhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhH
Confidence 776667777777 8888888888887777777788888888888888887555566666666666666666665333344
Q ss_pred hcCCCCCCEEEeeCCcCCcCCC-------cCCCCCeeeCCCCCCCCCC
Q 015481 306 ICCLPKLENFTYSYNFFCTEPL-------ACLKLKVKDDRQNCIPNRP 346 (406)
Q Consensus 306 l~~l~~L~~L~Ls~N~l~~~~~-------~~~~L~~L~l~~N~l~~~p 346 (406)
|..+.+|++|||++|.|++.+. .++.|+.|++.+|+|..+|
T Consensus 361 f~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~ 408 (873)
T KOG4194|consen 361 FVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP 408 (873)
T ss_pred HHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc
Confidence 5555666666666665554443 2344555555555554443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=1.6e-26 Score=220.75 Aligned_cols=249 Identities=21% Similarity=0.235 Sum_probs=169.3
Q ss_pred CcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEe
Q 015481 95 LTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDI 174 (406)
Q Consensus 95 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 174 (406)
...+.||+++|.++..-+..|.++++|+++++..|.++ .+|.......+|+.|+|.+|.|+....+.+..++.|+.|||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 35678899999988777788888999999999999888 78875555666899999999988777788888889999999
Q ss_pred ecCcCCCCCchhhhcc--ccCeeeccccccccCCCCCCCCCC-ccEEEcccccCCcCCchhHHhcccccceeeeccCCCc
Q 015481 175 RFNQFEGEIPSAVFDL--KLDALFLNNNKFTSSLPNNIGNSP-VSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLK 251 (406)
Q Consensus 175 s~N~l~~~~p~~~~~l--~L~~L~L~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~ 251 (406)
|.|.|+ .+|..-+.. ++++|+|++|+|+..-...|...+ |..|.+++|+++...+..+.++. .|+.|+|..|+|.
T Consensus 157 SrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~-~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 157 SRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLP-KLESLDLNRNRIR 234 (873)
T ss_pred hhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcc-hhhhhhcccccee
Confidence 999888 666554444 389999999988865555665554 88888888888873334444476 8888888888776
Q ss_pred ccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCCc---
Q 015481 252 GCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPLA--- 328 (406)
Q Consensus 252 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~--- 328 (406)
-.--..|.++++|+.|.|..|.+...-...|..+.++++|+|..|+++..--.++.++++|+.|+||+|.|..+.++
T Consensus 235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws 314 (873)
T KOG4194|consen 235 IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS 314 (873)
T ss_pred eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh
Confidence 54334555566666655555555533334455555555555555555533344445555555555555555544432
Q ss_pred -CCCCCeeeCCCCCCCCCC
Q 015481 329 -CLKLKVKDDRQNCIPNRP 346 (406)
Q Consensus 329 -~~~L~~L~l~~N~l~~~p 346 (406)
+.+|++|+|++|+|+.++
T Consensus 315 ftqkL~~LdLs~N~i~~l~ 333 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLD 333 (873)
T ss_pred hcccceeEeccccccccCC
Confidence 334555555555555543
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=1.3e-25 Score=216.14 Aligned_cols=242 Identities=24% Similarity=0.368 Sum_probs=129.4
Q ss_pred CCCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCc-hhhCCcCCceEecccccccccCchhhcCCCCCcE
Q 015481 93 DCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPD-SFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKF 171 (406)
Q Consensus 93 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 171 (406)
.+..++.|||++|++. ..|..+...+++-+|+|++|+|. .||. .|.+++.|-+||||+|++. .+|..+..+..|+.
T Consensus 101 ~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQT 177 (1255)
T ss_pred ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhh
Confidence 4556666777777666 55666666666667777777666 4443 4556666667777777765 55666666666777
Q ss_pred EEeecCcCCCCCchhhhccc-cCeeeccccccc-cCCCCCCCCC-CccEEEcccccCCcCCchhHHhcccccceeeeccC
Q 015481 172 LDIRFNQFEGEIPSAVFDLK-LDALFLNNNKFT-SSLPNNIGNS-PVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANA 248 (406)
Q Consensus 172 L~Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~-~~~~~~~~~~-~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n 248 (406)
|+|++|.+.----..+..+. |+.|.+++.+-+ ..+|..+... +|..++++.|++.. +|+.+.++. +|+.|+|++|
T Consensus 178 L~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vPecly~l~-~LrrLNLS~N 255 (1255)
T KOG0444|consen 178 LKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VPECLYKLR-NLRRLNLSGN 255 (1255)
T ss_pred hhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-chHHHhhhh-hhheeccCcC
Confidence 77766665410000001111 333333332221 1233333322 25556666666553 556666655 5666666666
Q ss_pred CCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCC-------------------------cccccCc
Q 015481 249 KLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHN-------------------------NLSGAIP 303 (406)
Q Consensus 249 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-------------------------~l~~~~p 303 (406)
+|+. +....+...+|++|+||+|+++ .+|..+..+++|+.|.+.+| .+. .+|
T Consensus 256 ~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVP 332 (1255)
T KOG0444|consen 256 KITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVP 332 (1255)
T ss_pred ceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCc
Confidence 6554 2233334445555555555555 45555555555555555444 444 455
Q ss_pred hhhcCCCCCCEEEeeCCcCCcCCC---cCCCCCeeeCCCCCC
Q 015481 304 NSICCLPKLENFTYSYNFFCTEPL---ACLKLKVKDDRQNCI 342 (406)
Q Consensus 304 ~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~L~~L~l~~N~l 342 (406)
++++.+.+|+.|.|+.|++...+. -++.|+.||++.|.=
T Consensus 333 EglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 333 EGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred hhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcC
Confidence 555555555555555555555444 234555666666543
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=7e-26 Score=217.94 Aligned_cols=248 Identities=24% Similarity=0.371 Sum_probs=203.9
Q ss_pred CCCcEEEEECCCCCcc-ccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcE
Q 015481 93 DCLTVAGIDLNQANIA-GTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKF 171 (406)
Q Consensus 93 ~~~~l~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 171 (406)
.+++++.+++.+|++. .-+|+.+..+..|+.|||++|+++ ..|..+..-+++-.|+||+|+|..+.-..|.++..|-+
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLF 154 (1255)
T ss_pred cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhh
Confidence 5678888889988885 347888889999999999999998 78888888899999999999998443355678899999
Q ss_pred EEeecCcCCCCCchhhhccc-cCeeeccccccccCCCCCCC-CCCccEEEcccccC-CcCCchhHHhcccccceeeeccC
Q 015481 172 LDIRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIG-NSPVSVLVLANNNF-DSCLPPSLTKMAGTLNEIILANA 248 (406)
Q Consensus 172 L~Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l-~~~~p~~l~~l~~~L~~L~l~~n 248 (406)
||||+|++. .+|..+..+. |+.|.|++|.+.-.--..+. ...|++|.+++.+- ...+|.++..+. +|..++++.|
T Consensus 155 LDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~-NL~dvDlS~N 232 (1255)
T KOG0444|consen 155 LDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLH-NLRDVDLSEN 232 (1255)
T ss_pred hccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhh-hhhhcccccc
Confidence 999999998 8888888887 99999999987532222222 23378888888654 345899999998 9999999999
Q ss_pred CCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCC--cCC
Q 015481 249 KLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFC--TEP 326 (406)
Q Consensus 249 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~~ 326 (406)
++.. .|..+.++.+|+.|+||+|+|+ .+....+...+|++|+||.|+++ .+|..++.+++|+.|.+.+|+++ |++
T Consensus 233 ~Lp~-vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiP 309 (1255)
T KOG0444|consen 233 NLPI-VPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIP 309 (1255)
T ss_pred CCCc-chHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCc
Confidence 9987 8999999999999999999999 77777778889999999999999 89999999999999999998764 444
Q ss_pred C--------------------------cCCCCCeeeCCCCCCCCCC
Q 015481 327 L--------------------------ACLKLKVKDDRQNCIPNRP 346 (406)
Q Consensus 327 ~--------------------------~~~~L~~L~l~~N~l~~~p 346 (406)
. .|.+|+.|.|+.|++-++|
T Consensus 310 SGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLP 355 (1255)
T KOG0444|consen 310 SGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLP 355 (1255)
T ss_pred cchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeech
Confidence 3 2445777888888877776
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=3e-25 Score=203.84 Aligned_cols=262 Identities=28% Similarity=0.408 Sum_probs=174.8
Q ss_pred CCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhh-cCCCCCcEE
Q 015481 94 CLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVV-LCLPSLKFL 172 (406)
Q Consensus 94 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L 172 (406)
++++++||...|-+. .+|+.++.+.+|+.|++..|+|. .+| .|.++..|++|+++.|+|+ .+|... ..+++|.+|
T Consensus 182 m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vL 257 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVL 257 (565)
T ss_pred HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceee
Confidence 455666666666554 67777888888888888888877 556 5777777777777777776 555544 478888889
Q ss_pred EeecCcCCCCCchhhhccc-cCeeeccccccccCCCCCCCCCCccEEEcccccCCc------------------------
Q 015481 173 DIRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDS------------------------ 227 (406)
Q Consensus 173 ~Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~------------------------ 227 (406)
||.+|+++ +.|+++..++ |++|++++|.++ .+|..+++..|+.|.+.+|.+..
T Consensus 258 DLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~d 335 (565)
T KOG0472|consen 258 DLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDD 335 (565)
T ss_pred eccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccC
Confidence 99999988 8888888888 889999998887 66777777666766666664422
Q ss_pred ----------------------------------------CCchhHHhccc--ccceeeeccCCC---------------
Q 015481 228 ----------------------------------------CLPPSLTKMAG--TLNEIILANAKL--------------- 250 (406)
Q Consensus 228 ----------------------------------------~~p~~l~~l~~--~L~~L~l~~n~l--------------- 250 (406)
.+|..++.... -....+++.|++
T Consensus 336 glS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT 415 (565)
T KOG0472|consen 336 GLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVT 415 (565)
T ss_pred CCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHH
Confidence 12222222110 022233333332
Q ss_pred --------cccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcC
Q 015481 251 --------KGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFF 322 (406)
Q Consensus 251 --------~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 322 (406)
.+.+|..++.+++|..|+|++|-+. .+|..++.+..|+.|++++|+|. .+|..+..+..|+.+-.++|++
T Consensus 416 ~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi 493 (565)
T KOG0472|consen 416 DLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQI 493 (565)
T ss_pred HHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccc
Confidence 2335666777888889999888887 88888888888999999988887 6666555555555555556666
Q ss_pred CcCCC----cCCCCCeeeCCCCCCCCCCCCCCc---ccccccccCCCC
Q 015481 323 CTEPL----ACLKLKVKDDRQNCIPNRPFQRSP---MECKTFYSHPVD 363 (406)
Q Consensus 323 ~~~~~----~~~~L~~L~l~~N~l~~~p~~~~~---~~~~~~~~np~~ 363 (406)
..+++ .+.+|..|||.+|.|..+|..... +.-..+.+||+.
T Consensus 494 ~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 494 GSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 65555 245566666666666666533322 222355666654
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=1.4e-25 Score=206.06 Aligned_cols=241 Identities=26% Similarity=0.361 Sum_probs=124.1
Q ss_pred EEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEeec
Q 015481 97 VAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRF 176 (406)
Q Consensus 97 l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 176 (406)
+..+.+++|.+. .+.+.+.++..|.+|++.+|++. ..|.+++.+..++.|+.++|+++ .+|+.+..+.+|+.|+.++
T Consensus 47 l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 47 LQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred hhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccc
Confidence 344555555554 22233555555555555555555 45555555555555555555555 4555555555555555555
Q ss_pred CcCCCCCchhhhccc-cCeeeccccccccCCCCCCCC-CCccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccC
Q 015481 177 NQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGN-SPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCL 254 (406)
Q Consensus 177 N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~ 254 (406)
|.+. ++|+.++.+. ++.++..+|+++ ..|..++. .++..+++.+|++.. .|+....+. .|++|+...|-+.. +
T Consensus 124 n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~-~L~~ld~~~N~L~t-l 198 (565)
T KOG0472|consen 124 NELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIAMK-RLKHLDCNSNLLET-L 198 (565)
T ss_pred ccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHHHH-HHHhcccchhhhhc-C
Confidence 5555 4555555444 555555555555 33333332 225555555555554 333333344 55555555555533 4
Q ss_pred hhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhc-CCCCCCEEEeeCCcCCcCCCc---CC
Q 015481 255 LKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSIC-CLPKLENFTYSYNFFCTEPLA---CL 330 (406)
Q Consensus 255 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~~~---~~ 330 (406)
|..++.+.+|+.|+|.+|++. .+| +|.+++.|++|.++.|+|. .+|.+.+ .++++.+|||..|++...|.. +.
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~clLr 275 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLR 275 (565)
T ss_pred ChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHHHhh
Confidence 555555555555555555555 455 3555555555555555555 4444433 455555555555555554442 23
Q ss_pred CCCeeeCCCCCCCCCCCC
Q 015481 331 KLKVKDDRQNCIPNRPFQ 348 (406)
Q Consensus 331 ~L~~L~l~~N~l~~~p~~ 348 (406)
+|++||+++|.|+++|..
T Consensus 276 sL~rLDlSNN~is~Lp~s 293 (565)
T KOG0472|consen 276 SLERLDLSNNDISSLPYS 293 (565)
T ss_pred hhhhhcccCCccccCCcc
Confidence 355555555555555533
No 9
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.86 E-value=3.7e-21 Score=198.57 Aligned_cols=243 Identities=19% Similarity=0.347 Sum_probs=188.8
Q ss_pred cEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEee
Q 015481 96 TVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIR 175 (406)
Q Consensus 96 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 175 (406)
+.+.|++++++++ .+|..+. +.|+.|++++|+|+ .+|..+. .+|++|++++|+++ .+|..+. .+|+.|+|+
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 5678999998888 5676554 57999999999999 5776554 58999999999998 5666553 479999999
Q ss_pred cCcCCCCCchhhhccccCeeeccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccCh
Q 015481 176 FNQFEGEIPSAVFDLKLDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLL 255 (406)
Q Consensus 176 ~N~l~~~~p~~~~~l~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~ 255 (406)
+|.+. .+|..+. -.|+.|++++|+++ .+|..+. ..|+.|++++|++++ +|..+. .+|+.|++++|+++. +|
T Consensus 250 ~N~L~-~LP~~l~-s~L~~L~Ls~N~L~-~LP~~l~-~sL~~L~Ls~N~Lt~-LP~~lp---~sL~~L~Ls~N~Lt~-LP 320 (754)
T PRK15370 250 INRIT-ELPERLP-SALQSLDLFHNKIS-CLPENLP-EELRYLSVYDNSIRT-LPAHLP---SGITHLNVQSNSLTA-LP 320 (754)
T ss_pred CCccC-cCChhHh-CCCCEEECcCCccC-ccccccC-CCCcEEECCCCcccc-Ccccch---hhHHHHHhcCCcccc-CC
Confidence 99998 7887654 24999999999998 5676554 369999999999986 665543 278999999999986 45
Q ss_pred hhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCCcCC-CCCe
Q 015481 256 KDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPLACL-KLKV 334 (406)
Q Consensus 256 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~-~L~~ 334 (406)
..+ .++|+.|++++|.++ .+|..+. ++|+.|+|++|+|+ .+|..+. ++|+.|+|++|.|+.+++.++ .|+.
T Consensus 321 ~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~~sL~~ 392 (754)
T PRK15370 321 ETL--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNLPENLPAALQI 392 (754)
T ss_pred ccc--cccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCCCHhHHHHHHH
Confidence 433 368999999999998 5776664 68999999999998 6777653 689999999999998776543 5888
Q ss_pred eeCCCCCCCCCCCCC-------CcccccccccCCCCC
Q 015481 335 KDDRQNCIPNRPFQR-------SPMECKTFYSHPVDC 364 (406)
Q Consensus 335 L~l~~N~l~~~p~~~-------~~~~~~~~~~np~~C 364 (406)
|++++|+|+.+|... +......+.+||+..
T Consensus 393 LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 393 MQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred HhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 999999999887422 333345678888765
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=2.2e-22 Score=201.71 Aligned_cols=240 Identities=25% Similarity=0.411 Sum_probs=197.8
Q ss_pred CCCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEE
Q 015481 93 DCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFL 172 (406)
Q Consensus 93 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 172 (406)
...+++.+++++|+++ .+|+.++.+.+|+.+++.+|.++ .+|..+...++|++|++.+|.++ .+|....+++.|++|
T Consensus 239 ~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTL 315 (1081)
T ss_pred ccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeee
Confidence 4457888888888887 45677888888888888888886 67777888888888888888887 566677778889999
Q ss_pred EeecCcCCCCCchhhhccc---cCeeeccccccccCCCCCCC--CCCccEEEcccccCCcCCchhHHhcccccceeeecc
Q 015481 173 DIRFNQFEGEIPSAVFDLK---LDALFLNNNKFTSSLPNNIG--NSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILAN 247 (406)
Q Consensus 173 ~Ls~N~l~~~~p~~~~~l~---L~~L~L~~n~l~~~~~~~~~--~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~ 247 (406)
+|..|++. .+|..+.... ++.|+.+.|++. ..|..-. ...|+.|++.+|.+++..-..+..+. .|+.|+|++
T Consensus 316 dL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~-hLKVLhLsy 392 (1081)
T KOG0618|consen 316 DLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFK-HLKVLHLSY 392 (1081)
T ss_pred eehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhcccc-ceeeeeecc
Confidence 99999887 7777555433 777777777776 4442222 23389999999999988777788887 999999999
Q ss_pred CCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC
Q 015481 248 AKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL 327 (406)
Q Consensus 248 n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~ 327 (406)
|++.......+.++..|+.|+||+|+++ .+|..+..+..|++|...+|+|. ..| .+..++.|+.+|++.|.|+...-
T Consensus 393 NrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l 469 (1081)
T KOG0618|consen 393 NRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTL 469 (1081)
T ss_pred cccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhh
Confidence 9999877778899999999999999999 89999999999999999999998 788 78999999999999999986543
Q ss_pred ----cCCCCCeeeCCCCC
Q 015481 328 ----ACLKLKVKDDRQNC 341 (406)
Q Consensus 328 ----~~~~L~~L~l~~N~ 341 (406)
..++|++||+++|.
T Consensus 470 ~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 470 PEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhCCCcccceeeccCCc
Confidence 23789999999996
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=5.4e-20 Score=189.10 Aligned_cols=236 Identities=23% Similarity=0.282 Sum_probs=170.3
Q ss_pred CcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEe
Q 015481 95 LTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDI 174 (406)
Q Consensus 95 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 174 (406)
.+++.|++.+|+++. +|. ..++|++|++++|+|+ .+|.. .++|++|++++|.++ .+|.. ..+|+.|++
T Consensus 222 ~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~L 289 (788)
T PRK15387 222 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWI 289 (788)
T ss_pred cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhc---hhhcCEEEC
Confidence 367777888877773 453 2467788888888777 45542 356777888888776 34432 256778888
Q ss_pred ecCcCCCCCchhhhccccCeeeccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccC
Q 015481 175 RFNQFEGEIPSAVFDLKLDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCL 254 (406)
Q Consensus 175 s~N~l~~~~p~~~~~l~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~ 254 (406)
++|+++ .+|... ..|+.|++++|++++ +|... ..|+.|++++|.+++ +|. +..+|++|++++|++++ +
T Consensus 290 s~N~Lt-~LP~~p--~~L~~LdLS~N~L~~-Lp~lp--~~L~~L~Ls~N~L~~-LP~----lp~~Lq~LdLS~N~Ls~-L 357 (788)
T PRK15387 290 FGNQLT-SLPVLP--PGLQELSVSDNQLAS-LPALP--SELCKLWAYNNQLTS-LPT----LPSGLQELSVSDNQLAS-L 357 (788)
T ss_pred cCCccc-cccccc--cccceeECCCCcccc-CCCCc--ccccccccccCcccc-ccc----cccccceEecCCCccCC-C
Confidence 888887 566421 238888888888874 44322 247788888888875 553 22378999999999887 4
Q ss_pred hhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCCcCCCCCe
Q 015481 255 LKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPLACLKLKV 334 (406)
Q Consensus 255 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~L~~ 334 (406)
|.. ..+|+.|++++|+|+ .+|.. ..+|+.|+|++|+|+ .+|.. .++|+.|++++|.|++++....+|+.
T Consensus 358 P~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~LssIP~l~~~L~~ 426 (788)
T PRK15387 358 PTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTSLPMLPSGLLS 426 (788)
T ss_pred CCC---Ccccceehhhccccc-cCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCCCCcchhhhhh
Confidence 442 357888889999988 56753 357899999999998 56653 36799999999999987665567899
Q ss_pred eeCCCCCCCCCCCC---CCcccccccccCCCCCC
Q 015481 335 KDDRQNCIPNRPFQ---RSPMECKTFYSHPVDCG 365 (406)
Q Consensus 335 L~l~~N~l~~~p~~---~~~~~~~~~~~np~~C~ 365 (406)
|++++|+|+.+|.. ...+....+.+|++...
T Consensus 427 L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 427 LSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred hhhccCcccccChHHhhccCCCeEECCCCCCCch
Confidence 99999999999853 34455568899998754
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=3.9e-20 Score=190.12 Aligned_cols=217 Identities=25% Similarity=0.270 Sum_probs=155.1
Q ss_pred CCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEE
Q 015481 94 CLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLD 173 (406)
Q Consensus 94 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 173 (406)
.++|+.|++++|+++ .+|.. .++|+.|++++|.++ .+|..+ ++|+.|++++|+++ .+|. .+++|++|+
T Consensus 241 p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~lp---~~L~~L~Ls~N~Lt-~LP~---~p~~L~~Ld 308 (788)
T PRK15387 241 PPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPALP---SGLCKLWIFGNQLT-SLPV---LPPGLQELS 308 (788)
T ss_pred CCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhch---hhcCEEECcCCccc-cccc---cccccceeE
Confidence 357888888888887 44542 367888888888887 455432 56788888888887 4554 246788888
Q ss_pred eecCcCCCCCchhhhccccCeeeccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCccc
Q 015481 174 IRFNQFEGEIPSAVFDLKLDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGC 253 (406)
Q Consensus 174 Ls~N~l~~~~p~~~~~l~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~ 253 (406)
+++|+++ .+|... ..|+.|++++|.++ .+|... ..|+.|++++|++++ +|.. ..+|+.|++++|+++.
T Consensus 309 LS~N~L~-~Lp~lp--~~L~~L~Ls~N~L~-~LP~lp--~~Lq~LdLS~N~Ls~-LP~l----p~~L~~L~Ls~N~L~~- 376 (788)
T PRK15387 309 VSDNQLA-SLPALP--SELCKLWAYNNQLT-SLPTLP--SGLQELSVSDNQLAS-LPTL----PSELYKLWAYNNRLTS- 376 (788)
T ss_pred CCCCccc-cCCCCc--ccccccccccCccc-cccccc--cccceEecCCCccCC-CCCC----Ccccceehhhcccccc-
Confidence 8888888 455421 12778888888887 355421 348888888888875 5542 2378888888888876
Q ss_pred ChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC---cCC
Q 015481 254 LLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL---ACL 330 (406)
Q Consensus 254 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~---~~~ 330 (406)
+|.. ..+|+.|+|++|+|+ .+|.. .++|+.|++++|+|+ .+|.. ..+|+.|++++|+|+.++. .+.
T Consensus 377 LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~ 445 (788)
T PRK15387 377 LPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLTRLPESLIHLS 445 (788)
T ss_pred Cccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCcccccChHHhhcc
Confidence 5543 357888888888888 56643 357888888888888 56653 3467788888888887654 466
Q ss_pred CCCeeeCCCCCCCCC
Q 015481 331 KLKVKDDRQNCIPNR 345 (406)
Q Consensus 331 ~L~~L~l~~N~l~~~ 345 (406)
.|+.|++++|+|++.
T Consensus 446 ~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 446 SETTVNLEGNPLSER 460 (788)
T ss_pred CCCeEECCCCCCCch
Confidence 788888888888765
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=2.5e-20 Score=192.55 Aligned_cols=224 Identities=23% Similarity=0.363 Sum_probs=183.0
Q ss_pred CcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEe
Q 015481 95 LTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDI 174 (406)
Q Consensus 95 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 174 (406)
.+++.|+|++|+++ .+|..+. .+|++|++++|+++ .+|..+. .+|+.|+|++|+++ .+|..+. .+|+.|++
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence 47999999999998 5676554 58999999999999 6777554 47999999999998 6777664 58999999
Q ss_pred ecCcCCCCCchhhhccccCeeeccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccC
Q 015481 175 RFNQFEGEIPSAVFDLKLDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCL 254 (406)
Q Consensus 175 s~N~l~~~~p~~~~~l~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~ 254 (406)
++|+++ .+|..+.. .|+.|++++|+++ .+|..+. ..++.|++++|.++. +|..+. .+|+.|++++|.+++ +
T Consensus 270 s~N~L~-~LP~~l~~-sL~~L~Ls~N~Lt-~LP~~lp-~sL~~L~Ls~N~Lt~-LP~~l~---~sL~~L~Ls~N~Lt~-L 340 (754)
T PRK15370 270 FHNKIS-CLPENLPE-ELRYLSVYDNSIR-TLPAHLP-SGITHLNVQSNSLTA-LPETLP---PGLKTLEAGENALTS-L 340 (754)
T ss_pred cCCccC-ccccccCC-CCcEEECCCCccc-cCcccch-hhHHHHHhcCCcccc-CCcccc---ccceeccccCCcccc-C
Confidence 999999 67876542 4999999999998 4555443 358999999999986 665543 389999999999987 6
Q ss_pred hhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCCc------
Q 015481 255 LKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPLA------ 328 (406)
Q Consensus 255 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~------ 328 (406)
|..+ .++|+.|+|++|+|+ .+|..+. ++|++|+|++|+|+ .+|..+. ..|+.|++++|+|++++..
T Consensus 341 P~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~ 412 (754)
T PRK15370 341 PASL--PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRLPESLPHFRG 412 (754)
T ss_pred Chhh--cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccCchhHHHHhh
Confidence 6655 379999999999998 6787663 68999999999999 6777664 4699999999999976642
Q ss_pred -CCCCCeeeCCCCCCCC
Q 015481 329 -CLKLKVKDDRQNCIPN 344 (406)
Q Consensus 329 -~~~L~~L~l~~N~l~~ 344 (406)
++.+..+++.+|.|+.
T Consensus 413 ~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 413 EGPQPTRIIVEYNPFSE 429 (754)
T ss_pred cCCCccEEEeeCCCccH
Confidence 3567899999999864
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.81 E-value=7.7e-19 Score=192.43 Aligned_cols=243 Identities=19% Similarity=0.234 Sum_probs=141.3
Q ss_pred CCCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEE
Q 015481 93 DCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFL 172 (406)
Q Consensus 93 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 172 (406)
...+++.|++.++.+. .++..+..+++|+.|+|+++.....+|. ++.+++|++|+|++|.....+|..+..+++|+.|
T Consensus 609 ~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 609 RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 4456777777777765 4566667777777777777654445554 6677777777777766555677777777777777
Q ss_pred EeecCcCCCCCchhhhccc-cCeeeccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcc--------------
Q 015481 173 DIRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMA-------------- 237 (406)
Q Consensus 173 ~Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~-------------- 237 (406)
++++|...+.+|..+ .+. |+.|++++|...+.+|... .+|+.|++++|.+.. +|..+ .+.
T Consensus 687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~--~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~ 761 (1153)
T PLN03210 687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDIS--TNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEK 761 (1153)
T ss_pred eCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccccc--CCcCeeecCCCcccc-ccccc-cccccccccccccchhh
Confidence 777765444666655 333 7777777765554444332 236667776666543 44322 111
Q ss_pred ----------------cccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCccccc
Q 015481 238 ----------------GTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGA 301 (406)
Q Consensus 238 ----------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 301 (406)
++|+.|++++|.....+|..++++++|+.|+|++|...+.+|..+ .+++|++|++++|.....
T Consensus 762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRT 840 (1153)
T ss_pred ccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccc
Confidence 145555555555444455555555555555555544333455443 455555555555543323
Q ss_pred CchhhcCCCCCCEEEeeCCcCCcCCC---cCCCCCeeeCCC-CCCCCCC
Q 015481 302 IPNSICCLPKLENFTYSYNFFCTEPL---ACLKLKVKDDRQ-NCIPNRP 346 (406)
Q Consensus 302 ~p~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~L~~L~l~~-N~l~~~p 346 (406)
+|.. ..+|+.|+|++|.++..+. .+.+|+.|++++ |.++.+|
T Consensus 841 ~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~ 886 (1153)
T PLN03210 841 FPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVS 886 (1153)
T ss_pred cccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccC
Confidence 3332 2455666666666655443 355666666665 4555554
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.78 E-value=6.4e-18 Score=185.21 Aligned_cols=243 Identities=18% Similarity=0.232 Sum_probs=191.3
Q ss_pred CCCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEE
Q 015481 93 DCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFL 172 (406)
Q Consensus 93 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 172 (406)
.+.+++.|+|+++...+.+|. ++.+++|++|++++|.....+|..+.++++|++|++++|.....+|..+ ++++|+.|
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L 709 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRL 709 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEE
Confidence 467899999998876667764 8889999999999987666899999999999999999976555777655 78899999
Q ss_pred EeecCcCCCCCchhhhccccCeeeccccccccCCCCCCC-------------------------------CCCccEEEcc
Q 015481 173 DIRFNQFEGEIPSAVFDLKLDALFLNNNKFTSSLPNNIG-------------------------------NSPVSVLVLA 221 (406)
Q Consensus 173 ~Ls~N~l~~~~p~~~~~l~L~~L~L~~n~l~~~~~~~~~-------------------------------~~~L~~L~l~ 221 (406)
++++|...+.+|... ..|++|++++|.+. .+|..+. ...|+.|+++
T Consensus 710 ~Lsgc~~L~~~p~~~--~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls 786 (1153)
T PLN03210 710 NLSGCSRLKSFPDIS--TNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLS 786 (1153)
T ss_pred eCCCCCCcccccccc--CCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCC
Confidence 999887655555421 13778888888765 3443211 1247889999
Q ss_pred cccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCccccc
Q 015481 222 NNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGA 301 (406)
Q Consensus 222 ~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 301 (406)
+|...+.+|..+..+. +|+.|++++|...+.+|..+ .+++|+.|+|++|.....+|.. ..+|++|+|++|.|+ .
T Consensus 787 ~n~~l~~lP~si~~L~-~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~ 860 (1153)
T PLN03210 787 DIPSLVELPSSIQNLH-KLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-E 860 (1153)
T ss_pred CCCCccccChhhhCCC-CCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-c
Confidence 9988888999999998 99999999987656677765 7899999999998766566653 368999999999998 8
Q ss_pred CchhhcCCCCCCEEEeeC-CcCCcCCC---cCCCCCeeeCCCC-CCCCCC
Q 015481 302 IPNSICCLPKLENFTYSY-NFFCTEPL---ACLKLKVKDDRQN-CIPNRP 346 (406)
Q Consensus 302 ~p~~l~~l~~L~~L~Ls~-N~l~~~~~---~~~~L~~L~l~~N-~l~~~p 346 (406)
+|.++..+++|+.|++++ |.+.+++. .+.+|+.++++++ .|+..+
T Consensus 861 iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 861 VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 999999999999999988 67777665 4567888898876 344443
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.77 E-value=1.5e-20 Score=154.62 Aligned_cols=164 Identities=24% Similarity=0.486 Sum_probs=100.1
Q ss_pred cCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEeecCcCCCCCchhhhccc-cCe
Q 015481 116 GLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLK-LDA 194 (406)
Q Consensus 116 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-L~~ 194 (406)
.++.+++.|.+++|+++ .+|..++.+.+|+.|++.+|+|+ .+|..+..+++|+.|+++.|++. .+|..++..+ |+.
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 34455555555555555 44445555555555555555555 45555555555555555555555 4555554444 444
Q ss_pred eeccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCC
Q 015481 195 LFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNL 274 (406)
Q Consensus 195 L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l 274 (406)
|++.+|++.. ..+|..++.+. .|+.|++++|.+.- +|..++++++|+.|.+..|.+
T Consensus 107 ldltynnl~e----------------------~~lpgnff~m~-tlralyl~dndfe~-lp~dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 107 LDLTYNNLNE----------------------NSLPGNFFYMT-TLRALYLGDNDFEI-LPPDVGKLTNLQILSLRDNDL 162 (264)
T ss_pred hhcccccccc----------------------ccCCcchhHHH-HHHHHHhcCCCccc-CChhhhhhcceeEEeeccCch
Confidence 4444444431 12555666666 77777777777654 666677777777777777777
Q ss_pred CCccchhhcCCCCCCEEeCcCCcccccCchhhcC
Q 015481 275 VGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICC 308 (406)
Q Consensus 275 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 308 (406)
- .+|..++.+..|++|.+.+|+++ .+|..+++
T Consensus 163 l-~lpkeig~lt~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 163 L-SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred h-hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence 7 77777777777777777777777 66665544
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.76 E-value=2.5e-20 Score=187.13 Aligned_cols=238 Identities=24% Similarity=0.356 Sum_probs=156.5
Q ss_pred CCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEeecCcCCCCCchhhhccc-cCeeec
Q 015481 119 QDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLK-LDALFL 197 (406)
Q Consensus 119 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-L~~L~L 197 (406)
.+|++++++.|+++ .+|+.+..+.+|+.|+..+|+++ .+|..+....+|+.|.+.+|.++ .+|......+ |++|+|
T Consensus 241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence 34455555555554 34444445555555555555553 44444444455555555555554 4444444444 555555
Q ss_pred cccccccCCCCCCCC---CCccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCC
Q 015481 198 NNNKFTSSLPNNIGN---SPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNL 274 (406)
Q Consensus 198 ~~n~l~~~~~~~~~~---~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l 274 (406)
..|++. .+|..+.. ..+..|..+.|.+.......=..+. .|+.|++.+|.+++..-..+.+..+|+.|+|++|++
T Consensus 318 ~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~-~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL 395 (1081)
T KOG0618|consen 318 QSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHA-ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL 395 (1081)
T ss_pred hhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhH-HHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence 555554 33322111 1133444444444331111111122 689999999999988888889999999999999999
Q ss_pred CCccc-hhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC--cCCCCCeeeCCCCCCCCC--CC--
Q 015481 275 VGSLP-ESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL--ACLKLKVKDDRQNCIPNR--PF-- 347 (406)
Q Consensus 275 ~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~L~~L~l~~N~l~~~--p~-- 347 (406)
. .+| ..+.++..|++|+||+|+++ .+|..+..+..|++|...+|++...|. .+++|+.+|++-|+|+.. |.
T Consensus 396 ~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~ 473 (1081)
T KOG0618|consen 396 N-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEAL 473 (1081)
T ss_pred c-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhC
Confidence 9 566 55789999999999999999 899999999999999999999988775 678899999999999865 32
Q ss_pred CCCcccccccccCCCC
Q 015481 348 QRSPMECKTFYSHPVD 363 (406)
Q Consensus 348 ~~~~~~~~~~~~np~~ 363 (406)
+.+.++-..+.||++.
T Consensus 474 p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 474 PSPNLKYLDLSGNTRL 489 (1081)
T ss_pred CCcccceeeccCCccc
Confidence 2256667788999863
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=2.1e-19 Score=170.79 Aligned_cols=229 Identities=20% Similarity=0.217 Sum_probs=114.4
Q ss_pred CcEEEEECCCCCcccc----CcccccCCCCCCEEEcCCCcCCc------cCCchhhCCcCCceEecccccccccCchhhc
Q 015481 95 LTVAGIDLNQANIAGT----LPEKLGLLQDLALFHINSNRFCG------TIPDSFRNMQLLFELDVSNNQFSGCFPSVVL 164 (406)
Q Consensus 95 ~~l~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 164 (406)
.+++.|+++++.++.. ++..+...+.+++++++++.+.+ .++..+..+++|++|++++|.+.+..+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 3466777777766322 34445566667777777766652 2233455666777777777776654454444
Q ss_pred CCCC---CcEEEeecCcCCCC----Cchhhhcc-c-cCeeeccccccccCCC----CCCCC-CCccEEEcccccCCcC--
Q 015481 165 CLPS---LKFLDIRFNQFEGE----IPSAVFDL-K-LDALFLNNNKFTSSLP----NNIGN-SPVSVLVLANNNFDSC-- 228 (406)
Q Consensus 165 ~l~~---L~~L~Ls~N~l~~~----~p~~~~~l-~-L~~L~L~~n~l~~~~~----~~~~~-~~L~~L~l~~n~l~~~-- 228 (406)
.+.+ |++|++++|.+.+. +...+... . |++|++++|.+++... ..+.. .++++|++++|.+++.
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 4444 77777777766521 12223333 2 6666666666653211 11111 2355555555555432
Q ss_pred --CchhHHhcccccceeeeccCCCcccC----hhhhccCCCCcEEEeecCCCCCccchhhc-----CCCCCCEEeCcCCc
Q 015481 229 --LPPSLTKMAGTLNEIILANAKLKGCL----LKDIGLLNQVTVFDVSFNNLVGSLPESMG-----NMKSLEQLNVAHNN 297 (406)
Q Consensus 229 --~p~~l~~l~~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~Ls~N~ 297 (406)
++..+.... +|++|++++|.+++.. ...+..+++|++|++++|.+++.....+. ..+.|++|++++|.
T Consensus 183 ~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 183 RALAEGLKANC-NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHHHhCC-CCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 112222332 5555555555554321 22334445555555555555532222211 12455555555555
Q ss_pred ccc----cCchhhcCCCCCCEEEeeCCcCCc
Q 015481 298 LSG----AIPNSICCLPKLENFTYSYNFFCT 324 (406)
Q Consensus 298 l~~----~~p~~l~~l~~L~~L~Ls~N~l~~ 324 (406)
++. .+...+..+++|+.+++++|.++.
T Consensus 262 i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 262 ITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred CCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 541 122333444555555555555553
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.76 E-value=2.7e-19 Score=164.53 Aligned_cols=247 Identities=20% Similarity=0.187 Sum_probs=148.4
Q ss_pred CcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEeccc-ccccccCchhhcCCCCCcEEE
Q 015481 95 LTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSN-NQFSGCFPSVVLCLPSLKFLD 173 (406)
Q Consensus 95 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~ 173 (406)
...++|+|..|+|+..-+.+|+.+++|+.|||++|.|+.+-|++|.++.+|.+|-+.+ |+|+......|.+|.+|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 4788999999999977778999999999999999999988999999999998887666 999976667888888888888
Q ss_pred eecCcCCCCCchhhhccc-cCeeeccccccccCCCCCCCCCC-ccEEEcccccCCc-----------------------C
Q 015481 174 IRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNSP-VSVLVLANNNFDS-----------------------C 228 (406)
Q Consensus 174 Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~-----------------------~ 228 (406)
+.-|.+.-...+.+..++ +..|.+..|.+....-..+.... ++.+.+..|.+-. .
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 888888755555666666 77788877777632222333322 4444444443110 0
Q ss_pred CchhHHhc----------cccccee---eeccCCCccc-ChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCc
Q 015481 229 LPPSLTKM----------AGTLNEI---ILANAKLKGC-LLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVA 294 (406)
Q Consensus 229 ~p~~l~~l----------~~~L~~L---~l~~n~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 294 (406)
.|..+... ...++.+ ..+.+...+. ....|..+++|+.|+|++|+++++-+.+|.++..+++|.|.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 00000000 0011111 0111111111 12245555555555555555555555555555555555555
Q ss_pred CCcccccCchhhcCCCCCCEEEeeCCcCCcCCCc----CCCCCeeeCCCCC
Q 015481 295 HNNLSGAIPNSICCLPKLENFTYSYNFFCTEPLA----CLKLKVKDDRQNC 341 (406)
Q Consensus 295 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~----~~~L~~L~l~~N~ 341 (406)
.|+|...--..|.++..|+.|+|.+|+|+...|. ...|.+|++-.|.
T Consensus 307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 307 RNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred cchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 5555533333445555555555555555554442 2234445544443
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=2.2e-19 Score=170.65 Aligned_cols=247 Identities=23% Similarity=0.227 Sum_probs=182.6
Q ss_pred EEECCCCCccc-cCcccccCCCCCCEEEcCCCcCCc----cCCchhhCCcCCceEecccccccc------cCchhhcCCC
Q 015481 99 GIDLNQANIAG-TLPEKLGLLQDLALFHINSNRFCG----TIPDSFRNMQLLFELDVSNNQFSG------CFPSVVLCLP 167 (406)
Q Consensus 99 ~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~------~~p~~l~~l~ 167 (406)
.|+|..+.+++ .....+..+..|+.|+++++.++. .++..+...+.|++|+++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 46777777763 344556777889999999999864 255566677889999999998862 2345677889
Q ss_pred CCcEEEeecCcCCCCCchhhhccc----cCeeeccccccccC----CCCCCCC--CCccEEEcccccCCcCC----chhH
Q 015481 168 SLKFLDIRFNQFEGEIPSAVFDLK----LDALFLNNNKFTSS----LPNNIGN--SPVSVLVLANNNFDSCL----PPSL 233 (406)
Q Consensus 168 ~L~~L~Ls~N~l~~~~p~~~~~l~----L~~L~L~~n~l~~~----~~~~~~~--~~L~~L~l~~n~l~~~~----p~~l 233 (406)
+|++|++++|.+.+..+..+..+. |++|++++|++++. +...+.. .+++.|++++|.+++.. ...+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 999999999999865555554432 99999999998732 1222222 45999999999998532 3334
Q ss_pred HhcccccceeeeccCCCccc----ChhhhccCCCCcEEEeecCCCCCc----cchhhcCCCCCCEEeCcCCcccccCchh
Q 015481 234 TKMAGTLNEIILANAKLKGC----LLKDIGLLNQVTVFDVSFNNLVGS----LPESMGNMKSLEQLNVAHNNLSGAIPNS 305 (406)
Q Consensus 234 ~~l~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 305 (406)
..+. +|++|++++|.+++. ++..+..+++|++|+|++|.+++. +...+..+++|++|++++|.+++.....
T Consensus 162 ~~~~-~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 162 RANR-DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HhCC-CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 4445 799999999999853 334455667999999999999744 3445667889999999999998643333
Q ss_pred hc-----CCCCCCEEEeeCCcCCc--------CCCcCCCCCeeeCCCCCCCCCC
Q 015481 306 IC-----CLPKLENFTYSYNFFCT--------EPLACLKLKVKDDRQNCIPNRP 346 (406)
Q Consensus 306 l~-----~l~~L~~L~Ls~N~l~~--------~~~~~~~L~~L~l~~N~l~~~p 346 (406)
+. ..+.|+.|++++|.++. ..+.+.+|+.+++++|.++..+
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~ 294 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG 294 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH
Confidence 32 24799999999999972 2235678999999999998764
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.75 E-value=3.7e-20 Score=152.26 Aligned_cols=163 Identities=26% Similarity=0.524 Sum_probs=141.5
Q ss_pred CCCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEE
Q 015481 93 DCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFL 172 (406)
Q Consensus 93 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 172 (406)
++.+++.|.|++|.++ .+|+.+..+.+|+.|++.+|+|+ .+|..++.+++|+.|+++.|++. ..|..|+.++.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 6679999999999998 77888999999999999999999 78999999999999999999998 899999999999999
Q ss_pred EeecCcCCC-CCchhhhccc-cCeeeccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccceeeeccCCC
Q 015481 173 DIRFNQFEG-EIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKL 250 (406)
Q Consensus 173 ~Ls~N~l~~-~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l 250 (406)
||.+|.+.. .+|..++-+. |+.|+++.|.+. .+|..+++++ +|+.|.+.+|.+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe------------------------~lp~dvg~lt-~lqil~lrdndl 162 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE------------------------ILPPDVGKLT-NLQILSLRDNDL 162 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc------------------------cCChhhhhhc-ceeEEeeccCch
Confidence 999999863 5788888877 999999988886 3666677777 888888888887
Q ss_pred cccChhhhccCCCCcEEEeecCCCCCccchhhcCC
Q 015481 251 KGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNM 285 (406)
Q Consensus 251 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 285 (406)
-. +|..++.++.|+.|.+.+|+++ .+|..++.+
T Consensus 163 l~-lpkeig~lt~lrelhiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 163 LS-LPKEIGDLTRLRELHIQGNRLT-VLPPELANL 195 (264)
T ss_pred hh-CcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence 66 6788888888888888888888 777766654
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.70 E-value=4.6e-19 Score=163.07 Aligned_cols=256 Identities=20% Similarity=0.265 Sum_probs=187.0
Q ss_pred CCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEeec-CcCCCCC
Q 015481 105 ANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRF-NQFEGEI 183 (406)
Q Consensus 105 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~ 183 (406)
-+++ .+|..+- ..-..+.|..|.|+..-+.+|+.+++|+.|||++|+|+.+-|..|.++++|..|-+.+ |+|+ .+
T Consensus 56 ~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l 131 (498)
T KOG4237|consen 56 KGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DL 131 (498)
T ss_pred CCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hh
Confidence 3444 4555443 4567899999999966667999999999999999999999999999999988877666 9999 66
Q ss_pred chh-hhccc-cCeeeccccccccCCCCCCCCCC-ccEEEcccccCCcCCch-hHHhcccccceeeeccCCCc--------
Q 015481 184 PSA-VFDLK-LDALFLNNNKFTSSLPNNIGNSP-VSVLVLANNNFDSCLPP-SLTKMAGTLNEIILANAKLK-------- 251 (406)
Q Consensus 184 p~~-~~~l~-L~~L~L~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~p~-~l~~l~~~L~~L~l~~n~l~-------- 251 (406)
|.. +..+. ++.|.+.-|++.-.....+...+ +..|.+-.|.+.. ++. .+..+. .++.+.+..|.+-
T Consensus 132 ~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~-i~~~tf~~l~-~i~tlhlA~np~icdCnL~wl 209 (498)
T KOG4237|consen 132 PKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQS-ICKGTFQGLA-AIKTLHLAQNPFICDCNLPWL 209 (498)
T ss_pred hhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhh-hccccccchh-ccchHhhhcCccccccccchh
Confidence 654 55566 99999999998866556565544 7778888888765 444 555666 8888888777621
Q ss_pred ----ccChhhhccCCCCcEEEe-------------------------ecCCCCCccc-hhhcCCCCCCEEeCcCCccccc
Q 015481 252 ----GCLLKDIGLLNQVTVFDV-------------------------SFNNLVGSLP-ESMGNMKSLEQLNVAHNNLSGA 301 (406)
Q Consensus 252 ----~~~~~~l~~l~~L~~L~L-------------------------s~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~ 301 (406)
...+..++...-..-..| +.+..-+..| ..|+.+++|++|+|++|+|++.
T Consensus 210 a~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i 289 (498)
T KOG4237|consen 210 ADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRI 289 (498)
T ss_pred hhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchh
Confidence 111222222211111111 1122222444 3488999999999999999988
Q ss_pred CchhhcCCCCCCEEEeeCCcCCcCCC----cCCCCCeeeCCCCCCCCC-CCCCCc---ccccccccCCCCCCC
Q 015481 302 IPNSICCLPKLENFTYSYNFFCTEPL----ACLKLKVKDDRQNCIPNR-PFQRSP---MECKTFYSHPVDCGA 366 (406)
Q Consensus 302 ~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~L~~L~l~~N~l~~~-p~~~~~---~~~~~~~~np~~C~~ 366 (406)
-+.+|.+..++++|.|..|+|..+.. .+..|+.|+|.+|+|+.+ |..+.+ +....+.+|||.|..
T Consensus 290 ~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC 362 (498)
T KOG4237|consen 290 EDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC 362 (498)
T ss_pred hhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc
Confidence 89999999999999999999876554 567899999999999987 544433 445678899999954
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.65 E-value=1.5e-15 Score=156.19 Aligned_cols=155 Identities=26% Similarity=0.440 Sum_probs=129.6
Q ss_pred CcchHHHHHHHHHHHHhccCCCCCCCCCCCCCCCC-----CcceeecCCCCCCCCCCcEEEEECCCCCccccCcccccCC
Q 015481 44 NPRLLKAYIALQFWKLSITSDPNGFTSNWCGPNVC-----NYTGVYCAPAPDDPDCLTVAGIDLNQANIAGTLPEKLGLL 118 (406)
Q Consensus 44 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~w~~~~~c-----~w~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l 118 (406)
.+....+..+|+.+|..+.. +. ..+|.+ ++| .|.|+.|..... .....++.|+|++|.+.|.+|..++.+
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~-~~--~~~W~g-~~C~p~~~~w~Gv~C~~~~~-~~~~~v~~L~L~~n~L~g~ip~~i~~L 441 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGL-PL--RFGWNG-DPCVPQQHPWSGADCQFDST-KGKWFIDGLGLDNQGLRGFIPNDISKL 441 (623)
T ss_pred cccCchHHHHHHHHHHhcCC-cc--cCCCCC-CCCCCcccccccceeeccCC-CCceEEEEEECCCCCccccCCHHHhCC
Confidence 34566788999999998742 22 137865 345 799999963211 112369999999999999999999999
Q ss_pred CCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEeecCcCCCCCchhhhccc--cCeee
Q 015481 119 QDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLK--LDALF 196 (406)
Q Consensus 119 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--L~~L~ 196 (406)
++|+.|+|++|.++|.+|..++.+++|+.|+|++|++++.+|..+..+++|++|+|++|.++|.+|..+.... +..++
T Consensus 442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~ 521 (623)
T PLN03150 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN 521 (623)
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887643 67778
Q ss_pred ccccccc
Q 015481 197 LNNNKFT 203 (406)
Q Consensus 197 L~~n~l~ 203 (406)
+.+|...
T Consensus 522 ~~~N~~l 528 (623)
T PLN03150 522 FTDNAGL 528 (623)
T ss_pred ecCCccc
Confidence 8777654
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.50 E-value=1.7e-15 Score=145.58 Aligned_cols=181 Identities=30% Similarity=0.496 Sum_probs=145.3
Q ss_pred CCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEeecCcCCCCCchhhhccccCeee
Q 015481 117 LLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLKLDALF 196 (406)
Q Consensus 117 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~L~~L~ 196 (406)
.+..-...|++.|++. .+|..+..+..|+.+.|+.|.+. .+|..+.++..|.+|||+.|+++ .+|..++.++|+.|-
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli 149 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLI 149 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEE
Confidence 4555667889999998 78888888889999999999997 78888999999999999999998 899999999999999
Q ss_pred ccccccccCCCCCCCCC-CccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCC
Q 015481 197 LNNNKFTSSLPNNIGNS-PVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLV 275 (406)
Q Consensus 197 L~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 275 (406)
+++|+++ .+|..++.. ++..|+.+.|.+.. +|..+..+. +|+.|.+..|++.. +|..+..+ .|..||+|+|++.
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~-slr~l~vrRn~l~~-lp~El~~L-pLi~lDfScNkis 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLT-SLRDLNVRRNHLED-LPEELCSL-PLIRLDFSCNKIS 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhhh-chHHhhhHH-HHHHHHHhhhhhhh-CCHHHhCC-ceeeeecccCcee
Confidence 9999987 667666643 37778888888765 777777777 78888888888776 56666644 4778888888887
Q ss_pred CccchhhcCCCCCCEEeCcCCcccccCchhhc
Q 015481 276 GSLPESMGNMKSLEQLNVAHNNLSGAIPNSIC 307 (406)
Q Consensus 276 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 307 (406)
.+|-.|.+|+.|++|-|.+|.++ ..|..++
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC 254 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQ-SPPAQIC 254 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCC-CChHHHH
Confidence 78888888888888888888887 5555554
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.46 E-value=2.6e-15 Score=144.32 Aligned_cols=178 Identities=26% Similarity=0.436 Sum_probs=162.2
Q ss_pred CCcCCceEecccccccccCchhhcCCCCCcEEEeecCcCCCCCchhhhccc-cCeeeccccccccCCCCCCCCCCccEEE
Q 015481 141 NMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNSPVSVLV 219 (406)
Q Consensus 141 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~L~~L~ 219 (406)
.+..-...||+.|++. .+|..+..+..|+.+.|..|.+. .+|..+.++. |++|+|+.|+++ .+|..+....|+.|.
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli 149 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLI 149 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEE
Confidence 3455567899999998 88999999999999999999999 9999999999 999999999998 889999999999999
Q ss_pred cccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCccc
Q 015481 220 LANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLS 299 (406)
Q Consensus 220 l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 299 (406)
+++|+++. +|+.++... .|..|+.+.|++.. +|..++++.+|+.|.+..|++. .+|+.+..+ .|..||++.|+++
T Consensus 150 ~sNNkl~~-lp~~ig~~~-tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis 224 (722)
T KOG0532|consen 150 VSNNKLTS-LPEEIGLLP-TLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS 224 (722)
T ss_pred EecCcccc-CCcccccch-hHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee
Confidence 99999976 888888555 99999999999987 7889999999999999999999 888888865 5999999999999
Q ss_pred ccCchhhcCCCCCCEEEeeCCcCCcCCC
Q 015481 300 GAIPNSICCLPKLENFTYSYNFFCTEPL 327 (406)
Q Consensus 300 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~~ 327 (406)
.+|-.|..|..|++|-|.+|.|...+.
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCCCChH
Confidence 899999999999999999999987664
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.43 E-value=1.8e-13 Score=134.20 Aligned_cols=196 Identities=31% Similarity=0.521 Sum_probs=108.5
Q ss_pred EEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCc-CCceEecccccccccCchhhcCCCCCcEEEeecC
Q 015481 99 GIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQ-LLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFN 177 (406)
Q Consensus 99 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 177 (406)
.+++..+.+...+ ..+..++.++.|++.+|.++ .++.....+. +|++|++++|++. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 3555555553222 22344466666777766666 4555455553 6677777777666 44445666666777777777
Q ss_pred cCCCCCchhhhccc-cCeeeccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChh
Q 015481 178 QFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLK 256 (406)
Q Consensus 178 ~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~ 256 (406)
++. .+|....... |+.|++++|++. . +|..+.... .|++|.+++|++.. .+.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~-----------------------l~~~~~~~~-~L~~l~~~~N~~~~-~~~ 226 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-D-----------------------LPPEIELLS-ALEELDLSNNSIIE-LLS 226 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-c-----------------------Cchhhhhhh-hhhhhhhcCCccee-cch
Confidence 666 5555543333 666666666665 3 333322222 45555555554222 344
Q ss_pred hhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC
Q 015481 257 DIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL 327 (406)
Q Consensus 257 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~ 327 (406)
.+.++.++..+.+.+|++. .++..++.++++++|++++|.++ .++. ++.+.+++.|++++|.+...++
T Consensus 227 ~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 227 SLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hhhhcccccccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccch
Confidence 4555555555555666555 33455555566666666666665 3333 5556666666666666555444
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.34 E-value=1.8e-12 Score=127.13 Aligned_cols=194 Identities=29% Similarity=0.414 Sum_probs=133.2
Q ss_pred EEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCC-CCcEEEeecCcCCCCCchhhhccccCeeeccccc
Q 015481 123 LFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLP-SLKFLDIRFNQFEGEIPSAVFDLKLDALFLNNNK 201 (406)
Q Consensus 123 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~L~~L~L~~n~ 201 (406)
.+++..|.+.. ....+..++.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..+..++
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~---------- 163 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLP---------- 163 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccc----------
Confidence 35555555431 2222344455555555555555 3333334442 5555555555555 4443344444
Q ss_pred cccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchh
Q 015481 202 FTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPES 281 (406)
Q Consensus 202 l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~ 281 (406)
.|+.|++++|++.. +|....... +|+.|++++|+++. +|........|++|.+++|.+. ..+..
T Consensus 164 ------------~L~~L~l~~N~l~~-l~~~~~~~~-~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~ 227 (394)
T COG4886 164 ------------NLKNLDLSFNDLSD-LPKLLSNLS-NLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSS 227 (394)
T ss_pred ------------cccccccCCchhhh-hhhhhhhhh-hhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchh
Confidence 24455555555543 555444555 99999999999988 5665566777999999999765 67777
Q ss_pred hcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC--cCCCCCeeeCCCCCCCCCC
Q 015481 282 MGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL--ACLKLKVKDDRQNCIPNRP 346 (406)
Q Consensus 282 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~L~~L~l~~N~l~~~p 346 (406)
+..+.++..+.+.+|++. .++..++.+++++.|++++|.++.... ...+++.|++++|.+...+
T Consensus 228 ~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 228 LSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred hhhcccccccccCCceee-eccchhccccccceeccccccccccccccccCccCEEeccCccccccc
Confidence 899999999999999998 557788999999999999999988765 5678999999999887653
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.23 E-value=2.5e-12 Score=115.18 Aligned_cols=128 Identities=19% Similarity=0.167 Sum_probs=92.1
Q ss_pred ccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCc
Q 015481 215 VSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVA 294 (406)
Q Consensus 215 L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 294 (406)
|+.+|+++|.++. +.+++.-.+ .++.|++++|.+.. -..+..+++|+.||||+|.++ .+..+-..+-++++|.|+
T Consensus 286 LtelDLS~N~I~~-iDESvKL~P-kir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 286 LTELDLSGNLITQ-IDESVKLAP-KLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhccccccchhh-hhhhhhhcc-ceeEEeccccceee--ehhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 6667777776654 555555444 88888888888876 234777888888888888887 566665667788888888
Q ss_pred CCcccccCchhhcCCCCCCEEEeeCCcCCcCC-----CcCCCCCeeeCCCCCCCCCCCCC
Q 015481 295 HNNLSGAIPNSICCLPKLENFTYSYNFFCTEP-----LACLKLKVKDDRQNCIPNRPFQR 349 (406)
Q Consensus 295 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-----~~~~~L~~L~l~~N~l~~~p~~~ 349 (406)
+|.|. --..+..+-+|..||+++|+|.... ..++.|+.+.|.+|.|.+.|..+
T Consensus 361 ~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYR 418 (490)
T KOG1259|consen 361 QNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYR 418 (490)
T ss_pred hhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchHH
Confidence 88876 2245667777888888888876543 36777888888888888887433
No 29
>PLN03150 hypothetical protein; Provisional
Probab=99.23 E-value=2.9e-11 Score=124.62 Aligned_cols=88 Identities=28% Similarity=0.466 Sum_probs=51.9
Q ss_pred cceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeC
Q 015481 240 LNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSY 319 (406)
Q Consensus 240 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 319 (406)
++.|+|++|.+.+.+|..+..+++|+.|+|++|+++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 45555555555555555555555666666666666555555555555666666666666555555555555666666666
Q ss_pred CcCCcCCC
Q 015481 320 NFFCTEPL 327 (406)
Q Consensus 320 N~l~~~~~ 327 (406)
|.++|.+|
T Consensus 500 N~l~g~iP 507 (623)
T PLN03150 500 NSLSGRVP 507 (623)
T ss_pred CcccccCC
Confidence 65555554
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.22 E-value=2.8e-12 Score=117.10 Aligned_cols=238 Identities=18% Similarity=0.177 Sum_probs=143.8
Q ss_pred CCcEEEEECCCCCccc----cCcccccCCCCCCEEEcCCC---cCCccCCch-------hhCCcCCceEecccccccccC
Q 015481 94 CLTVAGIDLNQANIAG----TLPEKLGLLQDLALFHINSN---RFCGTIPDS-------FRNMQLLFELDVSNNQFSGCF 159 (406)
Q Consensus 94 ~~~l~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n---~l~~~~p~~-------~~~l~~L~~L~Ls~N~l~~~~ 159 (406)
...++.|+|++|.+.. .+...+.+.+.|+..++++- ++...+|+. +...++|++|+||+|.|.-..
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 3467888888887742 23445666777777777652 122234433 233456777777777765333
Q ss_pred chh----hcCCCCCcEEEeecCcCCCCCchhhhccc--cCeeeccccccccCCCCCCCCCCccEEEcccccCCcCC----
Q 015481 160 PSV----VLCLPSLKFLDIRFNQFEGEIPSAVFDLK--LDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCL---- 229 (406)
Q Consensus 160 p~~----l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~---- 229 (406)
+.. +..+..|++|.|.+|.+. . ..-..+. |.+|. .++..+ ...+|+++...+|++...-
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg-~--~ag~~l~~al~~l~--~~kk~~------~~~~Lrv~i~~rNrlen~ga~~~ 177 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLG-P--EAGGRLGRALFELA--VNKKAA------SKPKLRVFICGRNRLENGGATAL 177 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCC-h--hHHHHHHHHHHHHH--HHhccC------CCcceEEEEeeccccccccHHHH
Confidence 322 344566777777776665 1 1111111 22222 111110 1234777778777775422
Q ss_pred chhHHhcccccceeeeccCCCccc----ChhhhccCCCCcEEEeecCCCCCc----cchhhcCCCCCCEEeCcCCccccc
Q 015481 230 PPSLTKMAGTLNEIILANAKLKGC----LLKDIGLLNQVTVFDVSFNNLVGS----LPESMGNMKSLEQLNVAHNNLSGA 301 (406)
Q Consensus 230 p~~l~~l~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ 301 (406)
...+.... .|+.+.++.|.|... +...+..+++|+.|||.+|-|+.. +...+..++.|+.|++++|.+...
T Consensus 178 A~~~~~~~-~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~ 256 (382)
T KOG1909|consen 178 AEAFQSHP-TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENE 256 (382)
T ss_pred HHHHHhcc-ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccc
Confidence 22233333 788888888887532 234567888899999999988732 334456778888999998888755
Q ss_pred Cchhh-----cCCCCCCEEEeeCCcCCcCCC--------cCCCCCeeeCCCCCCC
Q 015481 302 IPNSI-----CCLPKLENFTYSYNFFCTEPL--------ACLKLKVKDDRQNCIP 343 (406)
Q Consensus 302 ~p~~l-----~~l~~L~~L~Ls~N~l~~~~~--------~~~~L~~L~l~~N~l~ 343 (406)
-...+ ...++|+++.+.+|.|+..-. ..+.|..|+|++|.+.
T Consensus 257 Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 257 GAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 43333 347888999999988874321 4567888888888883
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=3.3e-12 Score=119.68 Aligned_cols=203 Identities=21% Similarity=0.230 Sum_probs=107.8
Q ss_pred CCcCCceEecccccccccCc--hhhcCCCCCcEEEeecCcCCC--CCchhhhccc-cCeeeccccccccCCCCCCC--CC
Q 015481 141 NMQLLFELDVSNNQFSGCFP--SVVLCLPSLKFLDIRFNQFEG--EIPSAVFDLK-LDALFLNNNKFTSSLPNNIG--NS 213 (406)
Q Consensus 141 ~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~--~~ 213 (406)
++.+|++..|.+..+. ..+ .....+++++.||||.|-+.. .+-....+++ |+.|+++.|++.....+... ..
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 4555555556555554 222 234455666666666655541 1112223334 66666666655432222211 12
Q ss_pred CccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccc--hhhcCCCCCCEE
Q 015481 214 PVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLP--ESMGNMKSLEQL 291 (406)
Q Consensus 214 ~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L 291 (406)
.++.|.+++|.++..--..+....++|+.|++..|............+..|+.|||++|++. ..+ ...+.++.|+.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhh
Confidence 36667777776654322222222237777777777432222223344566777777777776 333 345667777777
Q ss_pred eCcCCccccc-Cchh-----hcCCCCCCEEEeeCCcCCcCCC-----cCCCCCeeeCCCCCCCCC
Q 015481 292 NVAHNNLSGA-IPNS-----ICCLPKLENFTYSYNFFCTEPL-----ACLKLKVKDDRQNCIPNR 345 (406)
Q Consensus 292 ~Ls~N~l~~~-~p~~-----l~~l~~L~~L~Ls~N~l~~~~~-----~~~~L~~L~l~~N~l~~~ 345 (406)
+++.+.+... +|+. ...+++|+.|+++.|++..... .+.+|+.|....|.|+.-
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 7777776532 2222 2456777777777777754332 344566666666666543
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.16 E-value=4e-11 Score=102.53 Aligned_cols=96 Identities=25% Similarity=0.368 Sum_probs=39.0
Q ss_pred ccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhh-cCCCCCCEEeCcCCccccc-CchhhcCCCCCCEEE
Q 015481 239 TLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESM-GNMKSLEQLNVAHNNLSGA-IPNSICCLPKLENFT 316 (406)
Q Consensus 239 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~ 316 (406)
+|+.|++++|.++.. ..+..++.|+.|++++|+|+ .+.+.+ ..+++|++|+|++|+|... .-..+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~ 119 (175)
T PF14580_consen 43 KLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLS 119 (175)
T ss_dssp T--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE
T ss_pred CCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceee
Confidence 667777777777652 34566777777777777777 443333 3567777777777777532 123456677777777
Q ss_pred eeCCcCCcCCC-------cCCCCCeeeC
Q 015481 317 YSYNFFCTEPL-------ACLKLKVKDD 337 (406)
Q Consensus 317 Ls~N~l~~~~~-------~~~~L~~L~l 337 (406)
|.+|.++.... .+++|+.||-
T Consensus 120 L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 120 LEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred ccCCcccchhhHHHHHHHHcChhheeCC
Confidence 77777776543 3667777763
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.12 E-value=1.4e-11 Score=112.56 Aligned_cols=208 Identities=17% Similarity=0.153 Sum_probs=133.2
Q ss_pred CcEEEEECCCCC---ccccCcc-------cccCCCCCCEEEcCCCcCCccCCch----hhCCcCCceEecccccccccCc
Q 015481 95 LTVAGIDLNQAN---IAGTLPE-------KLGLLQDLALFHINSNRFCGTIPDS----FRNMQLLFELDVSNNQFSGCFP 160 (406)
Q Consensus 95 ~~l~~L~L~~n~---l~~~~p~-------~l~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~Ls~N~l~~~~p 160 (406)
+.++..++++-- ....+|+ ++...++|++|+||+|.|.-.-+.. +.++..|++|+|.+|.+.-.--
T Consensus 58 ~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag 137 (382)
T KOG1909|consen 58 KELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAG 137 (382)
T ss_pred ccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHH
Confidence 478888887642 2223443 3456779999999999998554444 4567899999999999862111
Q ss_pred -------------hhhcCCCCCcEEEeecCcCCCCCch-----hhhccc-cCeeeccccccccCCCCCCCCCCccEEEcc
Q 015481 161 -------------SVVLCLPSLKFLDIRFNQFEGEIPS-----AVFDLK-LDALFLNNNKFTSSLPNNIGNSPVSVLVLA 221 (406)
Q Consensus 161 -------------~~l~~l~~L~~L~Ls~N~l~~~~p~-----~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~ 221 (406)
.....-++|+++..++|++. .-+. .+...+ |+.+.+..|.|...--
T Consensus 138 ~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle-n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~-------------- 202 (382)
T KOG1909|consen 138 GRLGRALFELAVNKKAASKPKLRVFICGRNRLE-NGGATALAEAFQSHPTLEEVRLSQNGIRPEGV-------------- 202 (382)
T ss_pred HHHHHHHHHHHHHhccCCCcceEEEEeeccccc-cccHHHHHHHHHhccccceEEEecccccCchh--------------
Confidence 11233467888888888876 2222 222222 6666666665531100
Q ss_pred cccCCcCCchhHHhcccccceeeeccCCCccc----ChhhhccCCCCcEEEeecCCCCCccchhh-----cCCCCCCEEe
Q 015481 222 NNNFDSCLPPSLTKMAGTLNEIILANAKLKGC----LLKDIGLLNQVTVFDVSFNNLVGSLPESM-----GNMKSLEQLN 292 (406)
Q Consensus 222 ~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l-----~~l~~L~~L~ 292 (406)
..+...+...+ .|+.|+|.+|.++.. +...+..+++|+.|++++|.++..-...+ ...++|+.|.
T Consensus 203 -----~al~eal~~~~-~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~ 276 (382)
T KOG1909|consen 203 -----TALAEALEHCP-HLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLE 276 (382)
T ss_pred -----HHHHHHHHhCC-cceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceec
Confidence 01233455555 788888888877643 23455667788888888888875443333 2467889999
Q ss_pred CcCCccccc----CchhhcCCCCCCEEEeeCCcCC
Q 015481 293 VAHNNLSGA----IPNSICCLPKLENFTYSYNFFC 323 (406)
Q Consensus 293 Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~ 323 (406)
+.+|.|+.. +...+...+.|+.|+|++|.+.
T Consensus 277 l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 277 LAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 999988643 2334456788889999999884
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.08 E-value=3.1e-11 Score=108.28 Aligned_cols=122 Identities=16% Similarity=0.155 Sum_probs=99.8
Q ss_pred ccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEee
Q 015481 239 TLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYS 318 (406)
Q Consensus 239 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 318 (406)
.|+++||++|.|+. +...+.-.+.++.|++|+|.+. .+-. +..+++|+.||||+|.++ .+..+-..+-+.+.|.|+
T Consensus 285 ~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchhh-hhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 79999999999987 6677788999999999999998 5444 889999999999999998 777777888999999999
Q ss_pred CCcCCcCCC--cCCCCCeeeCCCCCCCCCCC--CCCcccc---cccccCCCCC
Q 015481 319 YNFFCTEPL--ACLKLKVKDDRQNCIPNRPF--QRSPMEC---KTFYSHPVDC 364 (406)
Q Consensus 319 ~N~l~~~~~--~~~~L~~L~l~~N~l~~~p~--~~~~~~~---~~~~~np~~C 364 (406)
.|.|..... .+-+|..||+++|+|..+.. ....+.| ..+.+||+.-
T Consensus 361 ~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 361 QNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 999876554 45678999999999987741 1222334 5678888753
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.5e-11 Score=113.86 Aligned_cols=207 Identities=23% Similarity=0.290 Sum_probs=141.8
Q ss_pred cCCCCCCEEEcCCCcCCccCC--chhhCCcCCceEecccccccccCc--hhhcCCCCCcEEEeecCcCCCCCchhhh-cc
Q 015481 116 GLLQDLALFHINSNRFCGTIP--DSFRNMQLLFELDVSNNQFSGCFP--SVVLCLPSLKFLDIRFNQFEGEIPSAVF-DL 190 (406)
Q Consensus 116 ~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l 190 (406)
.++.+|+.+.|.+..+.. .+ .....+++++.|||++|-+..-.+ .....|++|+.|+|+.|++.-....... .+
T Consensus 118 sn~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 467888999998888772 22 356678899999999998873322 3456789999999999988732222221 22
Q ss_pred c-cCeeeccccccccCCCC--CCCCCCccEEEcccccCCc--CCchhHHhcccccceeeeccCCCcccC-hhhhccCCCC
Q 015481 191 K-LDALFLNNNKFTSSLPN--NIGNSPVSVLVLANNNFDS--CLPPSLTKMAGTLNEIILANAKLKGCL-LKDIGLLNQV 264 (406)
Q Consensus 191 ~-L~~L~L~~n~l~~~~~~--~~~~~~L~~L~l~~n~l~~--~~p~~l~~l~~~L~~L~l~~n~l~~~~-~~~l~~l~~L 264 (406)
. |+.|.|+.|.++...-. ....+.++.|++.+|.... ..+..+.+ .|++|+|++|++-... -...+.++.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~---~L~~LdLs~N~li~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQ---TLQELDLSNNNLIDFDQGYKVGTLPGL 273 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhh---HHhhccccCCcccccccccccccccch
Confidence 3 88999999888632111 1233558899999885222 22333332 8999999999886632 2356788999
Q ss_pred cEEEeecCCCCCc-cchh-----hcCCCCCCEEeCcCCcccccCc--hhhcCCCCCCEEEeeCCcCCcCCC
Q 015481 265 TVFDVSFNNLVGS-LPES-----MGNMKSLEQLNVAHNNLSGAIP--NSICCLPKLENFTYSYNFFCTEPL 327 (406)
Q Consensus 265 ~~L~Ls~N~l~~~-~p~~-----l~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~~~ 327 (406)
+.|+++.+.+... +|+. ...+++|++|+++.|+|. ..+ ..+..+++|+.|.+..|.|+....
T Consensus 274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~e~~ 343 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNKETD 343 (505)
T ss_pred hhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccccccccccc
Confidence 9999999988732 2222 346789999999999996 333 234567788888888888876443
No 36
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.02 E-value=2.2e-11 Score=119.95 Aligned_cols=237 Identities=22% Similarity=0.215 Sum_probs=146.2
Q ss_pred CcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEe
Q 015481 95 LTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDI 174 (406)
Q Consensus 95 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 174 (406)
..+..+++..|.+.. +-..+..+++|+.|++.+|.|. .+...+..+++|++|++++|.|+... .+..++.|+.|++
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhhee
Confidence 456666677777764 2234677888888888888888 34433677888888888888887543 3566777888888
Q ss_pred ecCcCCCCCchhhhccc-cCeeeccccccccCCCC-CCCCCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCcc
Q 015481 175 RFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPN-NIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKG 252 (406)
Q Consensus 175 s~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~ 252 (406)
++|.|. .+.. +..+. |+.+++++|++...-+. .-....++.+++.+|.+... ..+.... .+..+++..|.++.
T Consensus 148 ~~N~i~-~~~~-~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~-~l~~~~l~~n~i~~ 222 (414)
T KOG0531|consen 148 SGNLIS-DISG-LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI--EGLDLLK-KLVLLSLLDNKISK 222 (414)
T ss_pred ccCcch-hccC-CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc--cchHHHH-HHHHhhccccccee
Confidence 888887 4433 22244 88888888887643331 12233467777777776542 2233333 55555777777665
Q ss_pred cChhhhccCC--CCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcC-----
Q 015481 253 CLLKDIGLLN--QVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTE----- 325 (406)
Q Consensus 253 ~~~~~l~~l~--~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~----- 325 (406)
.-+ +..+. .|+.+++++|.+. .++..+..+..+..|++.+|++... ..+...+.+..+....|.+...
T Consensus 223 ~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (414)
T KOG0531|consen 223 LEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQ 297 (414)
T ss_pred ccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhc
Confidence 221 12222 2677778888777 4445566677777778877777622 1234455566666666665421
Q ss_pred ---CCcCCCCCeeeCCCCCCCCC
Q 015481 326 ---PLACLKLKVKDDRQNCIPNR 345 (406)
Q Consensus 326 ---~~~~~~L~~L~l~~N~l~~~ 345 (406)
......+..+.+..|.+...
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 298 EYITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred cccccccccccccccccCccccc
Confidence 12345566677777766543
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=2.6e-10 Score=97.53 Aligned_cols=103 Identities=23% Similarity=0.368 Sum_probs=43.2
Q ss_pred ccceeeeccCCCcccChhhhc-cCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhh-cCCCCCCEEE
Q 015481 239 TLNEIILANAKLKGCLLKDIG-LLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSI-CCLPKLENFT 316 (406)
Q Consensus 239 ~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~ 316 (406)
++++|+|.+|+|+.. +.++ .+.+|+.|+|++|.|+ .+. .+..++.|++|++++|+|+ .+...+ ..+++|++|+
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence 689999999999862 3455 5789999999999999 554 4778999999999999999 565555 4689999999
Q ss_pred eeCCcCCcCCC-----cCCCCCeeeCCCCCCCCCC
Q 015481 317 YSYNFFCTEPL-----ACLKLKVKDDRQNCIPNRP 346 (406)
Q Consensus 317 Ls~N~l~~~~~-----~~~~L~~L~l~~N~l~~~p 346 (406)
+++|+|..... .+++|+.|++.+|.++..+
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~ 129 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKK 129 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGST
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchh
Confidence 99999987554 5889999999999988664
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.00 E-value=5e-11 Score=117.44 Aligned_cols=81 Identities=27% Similarity=0.379 Sum_probs=36.4
Q ss_pred CcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEe
Q 015481 95 LTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDI 174 (406)
Q Consensus 95 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 174 (406)
.+++.|++.+|.+.... ..+..+.+|++|++++|.|+... .+..+..|+.|++++|.|+.. ..+..+.+|+.+++
T Consensus 95 ~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccchhhcc-cchhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhhcccC
Confidence 34455555555544321 11344455555555555554221 134444455555555555421 22333455555555
Q ss_pred ecCcCC
Q 015481 175 RFNQFE 180 (406)
Q Consensus 175 s~N~l~ 180 (406)
++|.+.
T Consensus 170 ~~n~i~ 175 (414)
T KOG0531|consen 170 SYNRIV 175 (414)
T ss_pred Ccchhh
Confidence 555554
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.88 E-value=1.3e-09 Score=76.67 Aligned_cols=60 Identities=33% Similarity=0.574 Sum_probs=39.7
Q ss_pred CCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEeecCcC
Q 015481 120 DLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQF 179 (406)
Q Consensus 120 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 179 (406)
+|++|++++|+++...+..|.++++|++|++++|.++...+..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 566666666666644445666677777777777777665556666777777777776654
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.88 E-value=1.3e-09 Score=76.68 Aligned_cols=60 Identities=32% Similarity=0.519 Sum_probs=32.5
Q ss_pred CCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcC
Q 015481 263 QVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFF 322 (406)
Q Consensus 263 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 322 (406)
+|++|++++|+++...+..|.++++|++|++++|.++...+..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455555555555533334455555555555555555544444555555555555555543
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.71 E-value=1.3e-08 Score=107.74 Aligned_cols=102 Identities=23% Similarity=0.291 Sum_probs=48.2
Q ss_pred cEEEEECCCCC--ccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEE
Q 015481 96 TVAGIDLNQAN--IAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLD 173 (406)
Q Consensus 96 ~l~~L~L~~n~--l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 173 (406)
.++.|-+..|. +.....+.|..++.|++|||++|.--+.+|..+++|-+|++|++++..++ .+|..+.+|..|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 44444444443 22222223444555555555554443455555555555555555555554 4555555555555555
Q ss_pred eecCcCCCCCchhhhccc-cCeeecc
Q 015481 174 IRFNQFEGEIPSAVFDLK-LDALFLN 198 (406)
Q Consensus 174 Ls~N~l~~~~p~~~~~l~-L~~L~L~ 198 (406)
+..+.....+|.....+. |++|.+.
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred cccccccccccchhhhcccccEEEee
Confidence 555443333333333333 5555443
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.67 E-value=2.1e-08 Score=106.16 Aligned_cols=129 Identities=24% Similarity=0.258 Sum_probs=102.1
Q ss_pred CCCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCc--CCccCCchhhCCcCCceEecccccccccCchhhcCCCCCc
Q 015481 93 DCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNR--FCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLK 170 (406)
Q Consensus 93 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~--l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 170 (406)
+...++++.+-+|.+. .++... ..++|++|-+..|. +.......|..++.|++|||++|.--+.+|..++.|-+|+
T Consensus 521 ~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred chhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 4456778888777765 333333 33479999999996 5534444588899999999999887779999999999999
Q ss_pred EEEeecCcCCCCCchhhhccc-cCeeeccccccccCCCCCCC-CCCccEEEccccc
Q 015481 171 FLDIRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIG-NSPVSVLVLANNN 224 (406)
Q Consensus 171 ~L~Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~ 224 (406)
+|++++..+. .+|..+.+++ |.+|++..+.....++.... ..+|++|.+....
T Consensus 599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 9999999999 9999999999 99999999887666666555 4458888876654
No 43
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.65 E-value=6.8e-09 Score=92.19 Aligned_cols=242 Identities=17% Similarity=0.195 Sum_probs=134.1
Q ss_pred CcEEEEECCCCCcccc----CcccccCCCCCCEEEcCCCcC---CccCCc-------hhhCCcCCceEecccccccccCc
Q 015481 95 LTVAGIDLNQANIAGT----LPEKLGLLQDLALFHINSNRF---CGTIPD-------SFRNMQLLFELDVSNNQFSGCFP 160 (406)
Q Consensus 95 ~~l~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l---~~~~p~-------~~~~l~~L~~L~Ls~N~l~~~~p 160 (406)
..+++++|++|.|... +...+.+-.+|+..++++-.. ...+++ .+.++++|+..+||.|.|....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 4567777777776533 223345556666666654211 112221 23445556666666665554444
Q ss_pred hh----hcCCCCCcEEEeecCcCCCCCch-hhhccccCeeeccccccccCCCCCCCCCCccEEEcccccCCcCCc---hh
Q 015481 161 SV----VLCLPSLKFLDIRFNQFEGEIPS-AVFDLKLDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLP---PS 232 (406)
Q Consensus 161 ~~----l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p---~~ 232 (406)
+. +..-+.|++|.+++|.+. .+.. -++. .|.+| ..|+ ..-..++|+++....|++...-. ..
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigk-al~~l--a~nK------Kaa~kp~Le~vicgrNRlengs~~~~a~ 179 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGK-ALFHL--AYNK------KAADKPKLEVVICGRNRLENGSKELSAA 179 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCC-ccchhHHHH-HHHHH--HHHh------hhccCCCceEEEeccchhccCcHHHHHH
Confidence 32 233345555555555543 1110 0000 01110 0010 01112347777777777743211 11
Q ss_pred HHhcccccceeeeccCCCccc-----ChhhhccCCCCcEEEeecCCCCCc----cchhhcCCCCCCEEeCcCCcccccCc
Q 015481 233 LTKMAGTLNEIILANAKLKGC-----LLKDIGLLNQVTVFDVSFNNLVGS----LPESMGNMKSLEQLNVAHNNLSGAIP 303 (406)
Q Consensus 233 l~~l~~~L~~L~l~~n~l~~~-----~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p 303 (406)
..+...+|+++.+..|.|... +...+..+.+|+.|||.+|-|+-. +...+..++.|+.|.+.+|-++..-.
T Consensus 180 ~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~ 259 (388)
T COG5238 180 LLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGV 259 (388)
T ss_pred HHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccH
Confidence 122223788889998888643 122345678999999999998732 23335567788999999998876544
Q ss_pred hhh------cCCCCCCEEEeeCCcCCcCCC-----------cCCCCCeeeCCCCCCCCCC
Q 015481 304 NSI------CCLPKLENFTYSYNFFCTEPL-----------ACLKLKVKDDRQNCIPNRP 346 (406)
Q Consensus 304 ~~l------~~l~~L~~L~Ls~N~l~~~~~-----------~~~~L~~L~l~~N~l~~~p 346 (406)
.++ ...++|+.|-..+|.+.+..- .++-|..+.+.+|+|...-
T Consensus 260 ~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~ 319 (388)
T COG5238 260 KSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELA 319 (388)
T ss_pred HHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHH
Confidence 433 246888889899997765332 3455667778888887653
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.64 E-value=9.4e-10 Score=109.27 Aligned_cols=125 Identities=22% Similarity=0.294 Sum_probs=84.2
Q ss_pred CccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchh-hcCCCCCCEEe
Q 015481 214 PVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPES-MGNMKSLEQLN 292 (406)
Q Consensus 214 ~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ 292 (406)
.|...+.+.|.+.- +..++.-+. .|+.|+|+.|+++.. ..+..++.|+.|||++|.++ .+|.. ...+ .|..|.
T Consensus 165 ~L~~a~fsyN~L~~-mD~SLqll~-ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 165 KLATASFSYNRLVL-MDESLQLLP-ALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hHhhhhcchhhHHh-HHHHHHHHH-Hhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeee
Confidence 36666777777643 344444444 788888888888763 37778888888888888887 55532 2333 388888
Q ss_pred CcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC-----cCCCCCeeeCCCCCCCCCC
Q 015481 293 VAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL-----ACLKLKVKDDRQNCIPNRP 346 (406)
Q Consensus 293 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-----~~~~L~~L~l~~N~l~~~p 346 (406)
|++|.++ .+ ..+.++.+|+.||+++|-|.+.-. .+..|+.|.|.+|.+---|
T Consensus 239 lrnN~l~-tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 239 LRNNALT-TL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred ecccHHH-hh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 8888876 22 246778888888888887765332 3445677777777665443
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.54 E-value=4.1e-09 Score=104.87 Aligned_cols=124 Identities=16% Similarity=0.175 Sum_probs=96.8
Q ss_pred ccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEee
Q 015481 239 TLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYS 318 (406)
Q Consensus 239 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 318 (406)
.|...+.++|.+.. ....+.-++.|+.|+|++|+++ ... .+..++.|++|||+.|.+. .+|.-=..-.+|+.|.++
T Consensus 165 ~L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLVL-MDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhhhheeeeec
Confidence 68889999999976 5667888999999999999998 433 6889999999999999998 666422222349999999
Q ss_pred CCcCCcCCC--cCCCCCeeeCCCCCCCCCCCCCC-----cccccccccCCCCCCC
Q 015481 319 YNFFCTEPL--ACLKLKVKDDRQNCIPNRPFQRS-----PMECKTFYSHPVDCGA 366 (406)
Q Consensus 319 ~N~l~~~~~--~~~~L~~L~l~~N~l~~~p~~~~-----~~~~~~~~~np~~C~~ 366 (406)
+|.++..-. ++.+|+.||+++|.|.+...-.+ .+.-..+.|||+-|.+
T Consensus 241 nN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 241 NNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred ccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 999987654 78899999999999988742111 1222356788888854
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.38 E-value=7.8e-08 Score=85.56 Aligned_cols=212 Identities=15% Similarity=0.098 Sum_probs=130.2
Q ss_pred CCcEEEEECCCCCc---cccCc-------ccccCCCCCCEEEcCCCcCCccCCch----hhCCcCCceEecccccccccC
Q 015481 94 CLTVAGIDLNQANI---AGTLP-------EKLGLLQDLALFHINSNRFCGTIPDS----FRNMQLLFELDVSNNQFSGCF 159 (406)
Q Consensus 94 ~~~l~~L~L~~n~l---~~~~p-------~~l~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~Ls~N~l~~~~ 159 (406)
-.+++..++++-.. ...++ +.+.++++|++.+||+|.|....|.. +++-+.|++|.+++|.+. .+
T Consensus 57 ~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~ 135 (388)
T COG5238 57 VRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PI 135 (388)
T ss_pred hcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-cc
Confidence 34677777775422 12222 34678999999999999998777764 456689999999999985 22
Q ss_pred c-hhh-------------cCCCCCcEEEeecCcCCCCCchhhhcc------ccCeeeccccccccCCCCCCCCCCccEEE
Q 015481 160 P-SVV-------------LCLPSLKFLDIRFNQFEGEIPSAVFDL------KLDALFLNNNKFTSSLPNNIGNSPVSVLV 219 (406)
Q Consensus 160 p-~~l-------------~~l~~L~~L~Ls~N~l~~~~p~~~~~l------~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ 219 (406)
. .-+ ..-+.|++.....|++. ..+...... .|+.+.+..|.|. |..+..
T Consensus 136 aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~------- 204 (388)
T COG5238 136 AGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENLKEVKIQQNGIR---PEGVTM------- 204 (388)
T ss_pred chhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCceeEEeeecCcC---cchhHH-------
Confidence 2 111 23467888888888876 444332221 1555555555443 111100
Q ss_pred cccccCCcCCchhHHhcccccceeeeccCCCcccC----hhhhccCCCCcEEEeecCCCCCccchhh------cCCCCCC
Q 015481 220 LANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCL----LKDIGLLNQVTVFDVSFNNLVGSLPESM------GNMKSLE 289 (406)
Q Consensus 220 l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~Ls~N~l~~~~p~~l------~~l~~L~ 289 (406)
.+...++... +|+.|++.+|.++..- ...+..++.|+.|.+.+|-++..-..++ ...++|+
T Consensus 205 --------L~~~gl~y~~-~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~ 275 (388)
T COG5238 205 --------LAFLGLFYSH-SLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLM 275 (388)
T ss_pred --------HHHHHHHHhC-cceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCcc
Confidence 0122344445 7788888887776432 2344556678888888887765433322 1357788
Q ss_pred EEeCcCCcccccCchh-----h--cCCCCCCEEEeeCCcCCcCC
Q 015481 290 QLNVAHNNLSGAIPNS-----I--CCLPKLENFTYSYNFFCTEP 326 (406)
Q Consensus 290 ~L~Ls~N~l~~~~p~~-----l--~~l~~L~~L~Ls~N~l~~~~ 326 (406)
.|...+|.+.+.+-.. + ..+|-|..|.+.+|+|....
T Consensus 276 ~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~ 319 (388)
T COG5238 276 PLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELA 319 (388)
T ss_pred ccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHH
Confidence 8888888776543221 1 45677777888888887643
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.33 E-value=4e-08 Score=78.67 Aligned_cols=59 Identities=19% Similarity=0.359 Sum_probs=27.8
Q ss_pred ccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCccc
Q 015481 239 TLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLS 299 (406)
Q Consensus 239 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 299 (406)
.++.|++++|.++. +|..+..++.|+.|+++.|.+. ..|..+..+.+|..|+..+|.+.
T Consensus 78 t~t~lNl~~neisd-vPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 78 TATTLNLANNEISD-VPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhhhhhcchhhhhh-chHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 44444444444444 3444444445555555555544 34444444444445554444444
No 48
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.25 E-value=1.4e-06 Score=56.33 Aligned_cols=39 Identities=33% Similarity=0.673 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCC---CCCCCcceeecC
Q 015481 48 LKAYIALQFWKLSITSDPNGFTSNWCG---PNVCNYTGVYCA 86 (406)
Q Consensus 48 ~~~~~~L~~~~~~~~~~~~~~~~~w~~---~~~c~w~gv~c~ 86 (406)
.++.++|+.||.++..++.+.+.+|.. .++|+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 468899999999998777788999974 589999999995
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=2e-07 Score=83.97 Aligned_cols=85 Identities=20% Similarity=0.174 Sum_probs=47.4
Q ss_pred CcEEEEECCCCCccc--cCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEeccccccccc-CchhhcCCCCCcE
Q 015481 95 LTVAGIDLNQANIAG--TLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGC-FPSVVLCLPSLKF 171 (406)
Q Consensus 95 ~~l~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~ 171 (406)
.+|+++||.+|.|+. .+-.-+.++++|++|+++.|.+...|-..-..+.+|++|-|.+..+.-. .-..+..++.+++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 466677777776652 2223355667777777777766633322113455667776666665421 2233445666666
Q ss_pred EEeecCcC
Q 015481 172 LDIRFNQF 179 (406)
Q Consensus 172 L~Ls~N~l 179 (406)
|.+|.|.+
T Consensus 151 lHmS~N~~ 158 (418)
T KOG2982|consen 151 LHMSDNSL 158 (418)
T ss_pred hhhccchh
Confidence 66666643
No 50
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=8.8e-08 Score=86.32 Aligned_cols=174 Identities=17% Similarity=0.135 Sum_probs=90.6
Q ss_pred CceEeccccccccc-CchhhcCCCCCcEEEeecCcCCCCCchhhhccc-cCeeeccccc-cccCCCC-CCCCC-CccEEE
Q 015481 145 LFELDVSNNQFSGC-FPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLK-LDALFLNNNK-FTSSLPN-NIGNS-PVSVLV 219 (406)
Q Consensus 145 L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~-l~~~~~~-~~~~~-~L~~L~ 219 (406)
||+|||++..|+.. .-..+..+.+|+.|.|.++++...+-..+.+-. |+.|+++.+. ++..... .+... .|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 55555555554421 111233445555555555555544444444433 5555554432 1110000 01111 255555
Q ss_pred cccccCCcCC-chhHHhcccccceeeeccCCCc---ccChhhhccCCCCcEEEeecCC-CCCccchhhcCCCCCCEEeCc
Q 015481 220 LANNNFDSCL-PPSLTKMAGTLNEIILANAKLK---GCLLKDIGLLNQVTVFDVSFNN-LVGSLPESMGNMKSLEQLNVA 294 (406)
Q Consensus 220 l~~n~l~~~~-p~~l~~l~~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls 294 (406)
++.+.+..+. -..+....++|+.|+++++.-. ..+..-...+++|..||||+|. ++...-..|.+++.|++|.++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 5555543322 2223344447778887776421 1122234568888888888764 444445567778888888888
Q ss_pred CCcccccCchh---hcCCCCCCEEEeeCC
Q 015481 295 HNNLSGAIPNS---ICCLPKLENFTYSYN 320 (406)
Q Consensus 295 ~N~l~~~~p~~---l~~l~~L~~L~Ls~N 320 (406)
.|.. .+|.. +...|+|.+||+-+.
T Consensus 347 RCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 347 RCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhcC--CChHHeeeeccCcceEEEEeccc
Confidence 8864 35543 366788888887553
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.16 E-value=1.6e-06 Score=56.23 Aligned_cols=36 Identities=33% Similarity=0.600 Sum_probs=17.7
Q ss_pred CCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCccc
Q 015481 263 QVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLS 299 (406)
Q Consensus 263 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 299 (406)
+|++|++++|+|+ .+|..++++++|++|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 44444555555555555555554
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.14 E-value=3.4e-07 Score=73.47 Aligned_cols=85 Identities=22% Similarity=0.397 Sum_probs=45.0
Q ss_pred cCCCCcEEEeecCCCCCccchhhc-CCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC---cCCCCCee
Q 015481 260 LLNQVTVFDVSFNNLVGSLPESMG-NMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL---ACLKLKVK 335 (406)
Q Consensus 260 ~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~L~~L 335 (406)
....|+..+|++|.+. .+|..|. ..+.++.|+|++|.|+ .+|..+..++.|+.|++++|.|.-.+. .+.++-.|
T Consensus 51 ~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred CCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence 3344455556666665 4444443 2335556666666665 555556666666666666665554442 23344455
Q ss_pred eCCCCCCCCCC
Q 015481 336 DDRQNCIPNRP 346 (406)
Q Consensus 336 ~l~~N~l~~~p 346 (406)
+.-+|.+..+|
T Consensus 129 ds~~na~~eid 139 (177)
T KOG4579|consen 129 DSPENARAEID 139 (177)
T ss_pred cCCCCccccCc
Confidence 55555555554
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.10 E-value=3.5e-06 Score=54.57 Aligned_cols=37 Identities=30% Similarity=0.583 Sum_probs=21.0
Q ss_pred CCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCc
Q 015481 287 SLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCT 324 (406)
Q Consensus 287 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 324 (406)
+|++|++++|+|+ .+|..++++++|+.|++++|+|+.
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 4566666666666 455556666666666666666554
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.06 E-value=1.4e-05 Score=76.98 Aligned_cols=135 Identities=13% Similarity=0.204 Sum_probs=74.1
Q ss_pred ccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEeecC-cCCCCCchhhhccccC
Q 015481 115 LGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFN-QFEGEIPSAVFDLKLD 193 (406)
Q Consensus 115 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~L~ 193 (406)
+..+.+++.|++++|.++ .+|. + ..+|++|.++++.--..+|+.+ ..+|++|++++| .+. .+|.. |+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~s-----Le 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPES-----VR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccccc-----cc
Confidence 455688999999999888 5662 2 2469999998744323666554 258899999888 444 45532 56
Q ss_pred eeeccccccc--cCCCCCCCCCCccEEEcccccCC--cCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEe
Q 015481 194 ALFLNNNKFT--SSLPNNIGNSPVSVLVLANNNFD--SCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDV 269 (406)
Q Consensus 194 ~L~L~~n~l~--~~~~~~~~~~~L~~L~l~~n~l~--~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 269 (406)
.|++..+... +.+|.. |+.|.+.+++.. ..++. .++.+|++|++++|.... .|..+ ..+|+.|++
T Consensus 116 ~L~L~~n~~~~L~~LPss-----Lk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i~-LP~~L--P~SLk~L~l 184 (426)
T PRK15386 116 SLEIKGSATDSIKNVPNG-----LTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNII-LPEKL--PESLQSITL 184 (426)
T ss_pred eEEeCCCCCcccccCcch-----Hhheecccccccccccccc---ccCCcccEEEecCCCccc-Ccccc--cccCcEEEe
Confidence 6666554432 122221 445554332210 00111 122356666666655432 22222 135666666
Q ss_pred ecC
Q 015481 270 SFN 272 (406)
Q Consensus 270 s~N 272 (406)
+.+
T Consensus 185 s~n 187 (426)
T PRK15386 185 HIE 187 (426)
T ss_pred ccc
Confidence 554
No 55
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=3.6e-07 Score=82.42 Aligned_cols=175 Identities=14% Similarity=0.114 Sum_probs=91.1
Q ss_pred CCCEEEcCCCcCCcc-CCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEeecCc-CCCCC-chhhhccc-cCee
Q 015481 120 DLALFHINSNRFCGT-IPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQ-FEGEI-PSAVFDLK-LDAL 195 (406)
Q Consensus 120 ~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~-p~~~~~l~-L~~L 195 (406)
+|++|||+...|+.. +..-+..+.+|+.|.+.++++.+.+-..+..-.+|+.|+|+.+. ++..- .-.+..++ |..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466677776666522 22234556667777777777766666666666677777776643 33110 11122333 6667
Q ss_pred eccccccccCCCCCCC---CCCccEEEcccccC--CcCCchhHHhcccccceeeeccCC-CcccChhhhccCCCCcEEEe
Q 015481 196 FLNNNKFTSSLPNNIG---NSPVSVLVLANNNF--DSCLPPSLTKMAGTLNEIILANAK-LKGCLLKDIGLLNQVTVFDV 269 (406)
Q Consensus 196 ~L~~n~l~~~~~~~~~---~~~L~~L~l~~n~l--~~~~p~~l~~l~~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L 269 (406)
+++.+.+....-..+. ..+++.|+++++.- ...--..+.+-.++|.+|||++|. ++......|.+++.|++|.|
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 7766665433221111 12366666665431 111112222222367777776654 33323345556666777766
Q ss_pred ecCCCCCccchh---hcCCCCCCEEeCcCC
Q 015481 270 SFNNLVGSLPES---MGNMKSLEQLNVAHN 296 (406)
Q Consensus 270 s~N~l~~~~p~~---l~~l~~L~~L~Ls~N 296 (406)
+.|.. .+|+. +...++|.+|++.++
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 66654 34443 345566677765554
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=2e-06 Score=77.77 Aligned_cols=84 Identities=20% Similarity=0.190 Sum_probs=56.2
Q ss_pred cCCCCcEEEeecCCCCCccc-hhhcCCCCCCEEeCcCCccccc-CchhhcCCCCCCEEEeeCCcCCcCCC----------
Q 015481 260 LLNQVTVFDVSFNNLVGSLP-ESMGNMKSLEQLNVAHNNLSGA-IPNSICCLPKLENFTYSYNFFCTEPL---------- 327 (406)
Q Consensus 260 ~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~~---------- 327 (406)
-++++..+-+-.|.+...-. .....++.+.-|+|+.|+|-.- --+++.++++|..|.+++|.+.....
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIa 276 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIA 276 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEe
Confidence 35678888888887763222 2344567777899999988632 23467889999999999998865433
Q ss_pred cCCCCCeeeCCCCCCCCC
Q 015481 328 ACLKLKVKDDRQNCIPNR 345 (406)
Q Consensus 328 ~~~~L~~L~l~~N~l~~~ 345 (406)
.+++++.|+=+ .|+..
T Consensus 277 RL~~v~vLNGs--kIss~ 292 (418)
T KOG2982|consen 277 RLTKVQVLNGS--KISSR 292 (418)
T ss_pred eccceEEecCc--ccchh
Confidence 34556666644 55543
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.78 E-value=4.2e-05 Score=65.61 Aligned_cols=99 Identities=18% Similarity=0.230 Sum_probs=69.0
Q ss_pred cccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCc--hhhcCCCCCCEE
Q 015481 238 GTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIP--NSICCLPKLENF 315 (406)
Q Consensus 238 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L 315 (406)
.....+||++|.+.. ...|..++.|.+|.|++|+|+..-|.--.-+++|..|.|.+|.|. ++- .-+..+|+|++|
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence 366777888887765 345667788888888888888555554445677888888888876 221 235667888888
Q ss_pred EeeCCcCCcCCC-------cCCCCCeeeCCC
Q 015481 316 TYSYNFFCTEPL-------ACLKLKVKDDRQ 339 (406)
Q Consensus 316 ~Ls~N~l~~~~~-------~~~~L~~L~l~~ 339 (406)
.+-+|..+...- .+++|+.||...
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 888887765443 467777777653
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.64 E-value=4.3e-05 Score=79.39 Aligned_cols=114 Identities=15% Similarity=0.205 Sum_probs=64.5
Q ss_pred CchhHHhcccccceeeeccCCCccc-ChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccc-cCchhh
Q 015481 229 LPPSLTKMAGTLNEIILANAKLKGC-LLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSG-AIPNSI 306 (406)
Q Consensus 229 ~p~~l~~l~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l 306 (406)
.+..++.+.++|+.|.+.+-.+... +-....++++|..||+|+.+++ .+ ..++++++|+.|.+.+=.+.. ..-..+
T Consensus 139 W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~L 216 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDL 216 (699)
T ss_pred HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHH
Confidence 4445555555677777666555432 2233455667777777777666 33 456666666666666655542 122244
Q ss_pred cCCCCCCEEEeeCCcCCcCC----------CcCCCCCeeeCCCCCCCC
Q 015481 307 CCLPKLENFTYSYNFFCTEP----------LACLKLKVKDDRQNCIPN 344 (406)
Q Consensus 307 ~~l~~L~~L~Ls~N~l~~~~----------~~~~~L~~L~l~~N~l~~ 344 (406)
.++++|+.||+|........ ..+++|+.||.|+..+..
T Consensus 217 F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 217 FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 56677777777665443322 135667777777665543
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.64 E-value=0.00021 Score=68.94 Aligned_cols=138 Identities=14% Similarity=0.213 Sum_probs=87.6
Q ss_pred hhCCcCCceEecccccccccCchhhcCCCCCcEEEeecCcCCCCCchhhhccccCeeecccc-ccccCCCCCCCCCCccE
Q 015481 139 FRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLKLDALFLNNN-KFTSSLPNNIGNSPVSV 217 (406)
Q Consensus 139 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~L~~L~L~~n-~l~~~~~~~~~~~~L~~ 217 (406)
+..+.++++|++++|.++ .+|. + -.+|++|.++++.--..+|..+ ...|++|++++| .+. .+|. .|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~-sLP~-----sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEIS-GLPE-----SVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccc-cccc-----ccce
Confidence 445688999999999887 5562 2 2469999998744333667544 224999999988 443 4443 3677
Q ss_pred EEcccccCCcCCchhHHhcccccceeeeccCCCcc--cChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcC
Q 015481 218 LVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKG--CLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAH 295 (406)
Q Consensus 218 L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 295 (406)
|++..+.... +..++++|+.|.+.+++... .++.. -.++|++|++++|... .+|..+. .+|+.|+++.
T Consensus 117 L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 117 LEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHI 186 (426)
T ss_pred EEeCCCCCcc-----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEecc
Confidence 7777655432 33344477777775433111 01111 1367899999988876 5554443 5888888887
Q ss_pred Cc
Q 015481 296 NN 297 (406)
Q Consensus 296 N~ 297 (406)
+.
T Consensus 187 n~ 188 (426)
T PRK15386 187 EQ 188 (426)
T ss_pred cc
Confidence 63
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.53 E-value=0.00012 Score=62.99 Aligned_cols=103 Identities=21% Similarity=0.275 Sum_probs=76.3
Q ss_pred cceeeeccCCCcccChhhhc-cCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEee
Q 015481 240 LNEIILANAKLKGCLLKDIG-LLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYS 318 (406)
Q Consensus 240 L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 318 (406)
=+++++.+.++... ..++ ...+...+||++|.+. .++ .|..++.|.+|.|++|+|+..-|.--.-+++|..|.|.
T Consensus 21 e~e~~LR~lkip~i--enlg~~~d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIPVI--ENLGATLDQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccccch--hhccccccccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 34556666555431 1122 2457788999999997 333 37788999999999999995555444567889999999
Q ss_pred CCcCCcCCC-----cCCCCCeeeCCCCCCCCCC
Q 015481 319 YNFFCTEPL-----ACLKLKVKDDRQNCIPNRP 346 (406)
Q Consensus 319 ~N~l~~~~~-----~~~~L~~L~l~~N~l~~~p 346 (406)
+|.|..... .|++|+.|.+-+|+.+...
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~ 129 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKK 129 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhccc
Confidence 999876443 7899999999999888764
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.04 E-value=0.0003 Score=62.82 Aligned_cols=82 Identities=18% Similarity=0.206 Sum_probs=41.8
Q ss_pred ccceeeeccCCCcccChhhhccCCCCcEEEeecC--CCCCccchhhcCCCCCCEEeCcCCcccccCchh---hcCCCCCC
Q 015481 239 TLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFN--NLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNS---ICCLPKLE 313 (406)
Q Consensus 239 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~---l~~l~~L~ 313 (406)
.|+.|++.+..++. -..+-.+++|+.|+++.| ++++.++.....+++|++|++++|+|. ++.. +..+.+|.
T Consensus 44 ~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 44 ELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLKELENLK 119 (260)
T ss_pred chhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccchhhhhcchh
Confidence 44444454444443 223334556666666666 444444433444466666666666654 1222 23445555
Q ss_pred EEEeeCCcCCc
Q 015481 314 NFTYSYNFFCT 324 (406)
Q Consensus 314 ~L~Ls~N~l~~ 324 (406)
.|++.++..+.
T Consensus 120 ~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 120 SLDLFNCSVTN 130 (260)
T ss_pred hhhcccCCccc
Confidence 66666665554
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=9.9e-05 Score=66.40 Aligned_cols=93 Identities=18% Similarity=0.243 Sum_probs=68.1
Q ss_pred ccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCch--hhcCCCCCCEEE
Q 015481 239 TLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPN--SICCLPKLENFT 316 (406)
Q Consensus 239 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~ 316 (406)
+.++|++.++.+++ .+....++.|+.|.||-|.|+. +. .+..+++|++|+|..|.|. .+.+ .+.++++|+.|.
T Consensus 20 ~vkKLNcwg~~L~D--Isic~kMp~lEVLsLSvNkIss-L~-pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDD--ISICEKMPLLEVLSLSVNKISS-LA-PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccH--HHHHHhcccceeEEeecccccc-ch-hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHh
Confidence 67788888888876 3455678888888888888873 32 2677888888888888887 4433 346788888888
Q ss_pred eeCCcCCcCCC---------cCCCCCeee
Q 015481 317 YSYNFFCTEPL---------ACLKLKVKD 336 (406)
Q Consensus 317 Ls~N~l~~~~~---------~~~~L~~L~ 336 (406)
|..|.-+|.-+ .+++|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 88888777655 366676665
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.92 E-value=0.00061 Score=70.95 Aligned_cols=36 Identities=25% Similarity=0.393 Sum_probs=18.3
Q ss_pred CCCcEEEeecCcCC-CCCchhhhc-cc-cCeeecccccc
Q 015481 167 PSLKFLDIRFNQFE-GEIPSAVFD-LK-LDALFLNNNKF 202 (406)
Q Consensus 167 ~~L~~L~Ls~N~l~-~~~p~~~~~-l~-L~~L~L~~n~l 202 (406)
.+|++||+++...- ...|..++. ++ |+.|.+.+-.+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~ 160 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF 160 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCcee
Confidence 46777777765432 223333333 23 66666655444
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.66 E-value=0.0012 Score=59.07 Aligned_cols=68 Identities=22% Similarity=0.332 Sum_probs=43.7
Q ss_pred CcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccc--cccccCchhhcCCCCCcEEEeecCcCC
Q 015481 111 LPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNN--QFSGCFPSVVLCLPSLKFLDIRFNQFE 180 (406)
Q Consensus 111 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 180 (406)
+......+..|+.|.+.+..++. + ..|-.|++|++|.++.| ++++-++.....+++|++|++++|+|.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 44444455666666666666652 2 23556778888888888 555444444455688888888888876
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.00012 Score=65.83 Aligned_cols=89 Identities=18% Similarity=0.150 Sum_probs=68.2
Q ss_pred CCCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCc-hhhcCCCCCcE
Q 015481 93 DCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFP-SVVLCLPSLKF 171 (406)
Q Consensus 93 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~ 171 (406)
++.+++.|+.-++.+..+ ....+++.|++|.|+-|+|+.. ..|..+++|++|+|..|.|...-. ..+.++++|+.
T Consensus 17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 345788888888888754 2246789999999999999843 347889999999999999874321 34578899999
Q ss_pred EEeecCcCCCCCch
Q 015481 172 LDIRFNQFEGEIPS 185 (406)
Q Consensus 172 L~Ls~N~l~~~~p~ 185 (406)
|-|..|.-.|.-+.
T Consensus 93 LWL~ENPCc~~ag~ 106 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQ 106 (388)
T ss_pred HhhccCCcccccch
Confidence 99999988766554
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.69 E-value=0.038 Score=44.48 Aligned_cols=78 Identities=15% Similarity=0.148 Sum_probs=30.4
Q ss_pred cEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEee
Q 015481 96 TVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIR 175 (406)
Q Consensus 96 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 175 (406)
+++.+.+.. .+...-...|..+++|+.+++.++ +...-...|.++.+|+.+.+.. .+.......|..+++|+.+++.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence 455555543 333333344555555555555543 3322233455554555555543 3222233344445555555554
Q ss_pred c
Q 015481 176 F 176 (406)
Q Consensus 176 ~ 176 (406)
.
T Consensus 90 ~ 90 (129)
T PF13306_consen 90 S 90 (129)
T ss_dssp T
T ss_pred c
Confidence 3
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.58 E-value=0.005 Score=33.21 Aligned_cols=17 Identities=53% Similarity=0.833 Sum_probs=7.4
Q ss_pred CCEEeCcCCcccccCchh
Q 015481 288 LEQLNVAHNNLSGAIPNS 305 (406)
Q Consensus 288 L~~L~Ls~N~l~~~~p~~ 305 (406)
|++|+|++|+|+ .+|.+
T Consensus 2 L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp ESEEEETSSEES-EEGTT
T ss_pred ccEEECCCCcCE-eCChh
Confidence 344444444444 34433
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.44 E-value=0.0065 Score=32.74 Aligned_cols=12 Identities=42% Similarity=0.515 Sum_probs=5.5
Q ss_pred CceEeccccccc
Q 015481 145 LFELDVSNNQFS 156 (406)
Q Consensus 145 L~~L~Ls~N~l~ 156 (406)
|++||+++|+|+
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444444444444
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.20 E-value=0.06 Score=43.30 Aligned_cols=105 Identities=13% Similarity=0.122 Sum_probs=60.7
Q ss_pred ccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEeecCcCCCCCch-hhhccc
Q 015481 113 EKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPS-AVFDLK 191 (406)
Q Consensus 113 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~ 191 (406)
..|.+.++|+.+.+.. .+...-...|.++++|+.+.+..+ +.......|..+.+|+.+.+.. .+. .++. .+....
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccc
Confidence 4577888999999885 566555567888889999999885 6655556788888899999965 444 3333 334355
Q ss_pred -cCeeeccccccccCCCCCCCCCCccEEEccc
Q 015481 192 -LDALFLNNNKFTSSLPNNIGNSPVSVLVLAN 222 (406)
Q Consensus 192 -L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~ 222 (406)
++.+.+..+ +.......+....++.+.+..
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~~l~~i~~~~ 112 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNCNLKEINIPS 112 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT-T--EEE-TT
T ss_pred cccccccCcc-ccEEchhhhcCCCceEEEECC
Confidence 889998765 443444556666788888765
No 70
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.54 E-value=0.00083 Score=66.97 Aligned_cols=87 Identities=15% Similarity=0.196 Sum_probs=58.4
Q ss_pred ccceeeeccCCCcccC----hhhhccCCC-CcEEEeecCCCCCc----cchhhcCC-CCCCEEeCcCCcccccCc----h
Q 015481 239 TLNEIILANAKLKGCL----LKDIGLLNQ-VTVFDVSFNNLVGS----LPESMGNM-KSLEQLNVAHNNLSGAIP----N 304 (406)
Q Consensus 239 ~L~~L~l~~n~l~~~~----~~~l~~l~~-L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~Ls~N~l~~~~p----~ 304 (406)
++++|.+.+|.++... ...+...+. +..|++..|.+.+. +...+..+ ..++.++++.|.|+..-. .
T Consensus 205 ~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~ 284 (478)
T KOG4308|consen 205 SLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAE 284 (478)
T ss_pred cHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHH
Confidence 7888999988877432 223444455 66688888888743 22334445 677888888888875533 3
Q ss_pred hhcCCCCCCEEEeeCCcCCcC
Q 015481 305 SICCLPKLENFTYSYNFFCTE 325 (406)
Q Consensus 305 ~l~~l~~L~~L~Ls~N~l~~~ 325 (406)
.+...++++++.+++|.+...
T Consensus 285 ~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 285 VLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHhhhHHHHHhhcccCccccH
Confidence 345567888888888887653
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.53 E-value=0.00027 Score=70.39 Aligned_cols=108 Identities=24% Similarity=0.260 Sum_probs=68.2
Q ss_pred ccEEEcccccCCcC----CchhHHhcccccceeeeccCCCccc----ChhhhccC-CCCcEEEeecCCCCCc----cchh
Q 015481 215 VSVLVLANNNFDSC----LPPSLTKMAGTLNEIILANAKLKGC----LLKDIGLL-NQVTVFDVSFNNLVGS----LPES 281 (406)
Q Consensus 215 L~~L~l~~n~l~~~----~p~~l~~l~~~L~~L~l~~n~l~~~----~~~~l~~l-~~L~~L~Ls~N~l~~~----~p~~ 281 (406)
+++|.+.++.++.. +...+......+..|++.+|++.+. ....+..+ ..++.++++.|.|+.. +...
T Consensus 206 le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~ 285 (478)
T KOG4308|consen 206 LETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEV 285 (478)
T ss_pred HHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHH
Confidence 66677777666532 1122333332377799999998754 23344455 6789999999999854 3445
Q ss_pred hcCCCCCCEEeCcCCcccccCc----hhhcCCCCCCEEEeeCCcC
Q 015481 282 MGNMKSLEQLNVAHNNLSGAIP----NSICCLPKLENFTYSYNFF 322 (406)
Q Consensus 282 l~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l 322 (406)
+..++.++++.++.|.+...-. ..+.....+..+-+.++..
T Consensus 286 l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 330 (478)
T KOG4308|consen 286 LVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGK 330 (478)
T ss_pred HhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCc
Confidence 6677899999999999874322 2223344455555664443
No 72
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.71 E-value=0.0023 Score=56.32 Aligned_cols=84 Identities=17% Similarity=0.204 Sum_probs=68.5
Q ss_pred CCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEE
Q 015481 94 CLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLD 173 (406)
Q Consensus 94 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 173 (406)
..+++.||++.|.+. .+-..|..++.|..|+++.|.+. ..|..++.+..++.+++..|..+ ..|.++..++.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 457888999988876 33455777888888999988887 67888888888888888888887 7788888899999998
Q ss_pred eecCcCC
Q 015481 174 IRFNQFE 180 (406)
Q Consensus 174 Ls~N~l~ 180 (406)
+..|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 8888865
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.53 E-value=0.002 Score=56.72 Aligned_cols=82 Identities=21% Similarity=0.223 Sum_probs=57.1
Q ss_pred ccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEee
Q 015481 239 TLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYS 318 (406)
Q Consensus 239 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 318 (406)
..+.||++.|++-. .-..|..++.|+.||++.|++. .+|..++.+..++.+++..|..+ ..|.+++..++++.+++.
T Consensus 43 r~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence 56666776666543 3344555667777777777777 77777777777777777777776 677777777777777777
Q ss_pred CCcCC
Q 015481 319 YNFFC 323 (406)
Q Consensus 319 ~N~l~ 323 (406)
.|.|+
T Consensus 120 ~~~~~ 124 (326)
T KOG0473|consen 120 KTEFF 124 (326)
T ss_pred cCcch
Confidence 77654
No 74
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=93.26 E-value=0.0085 Score=57.17 Aligned_cols=84 Identities=11% Similarity=0.110 Sum_probs=52.3
Q ss_pred CcEEEEECCCCCccccCc--ccccCCCCCCEEEcCCCc-CCccCCchh-hCCcCCceEecccc-cccccCch-hhcCCCC
Q 015481 95 LTVAGIDLNQANIAGTLP--EKLGLLQDLALFHINSNR-FCGTIPDSF-RNMQLLFELDVSNN-QFSGCFPS-VVLCLPS 168 (406)
Q Consensus 95 ~~l~~L~L~~n~l~~~~p--~~l~~l~~L~~L~L~~n~-l~~~~p~~~-~~l~~L~~L~Ls~N-~l~~~~p~-~l~~l~~ 168 (406)
..+++|.+.++.-.+.-+ ....+.+++++|.+.++. ++...-..+ ..+.+|++|+|..+ .++...-. .-..+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 357788888765443322 223567888888888776 333222223 35678888888883 45543333 2346888
Q ss_pred CcEEEeecCc
Q 015481 169 LKFLDIRFNQ 178 (406)
Q Consensus 169 L~~L~Ls~N~ 178 (406)
|++|+++.+.
T Consensus 218 L~~lNlSwc~ 227 (483)
T KOG4341|consen 218 LKYLNLSWCP 227 (483)
T ss_pred HHHhhhccCc
Confidence 9999888764
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.06 E-value=0.063 Score=26.84 Aligned_cols=11 Identities=27% Similarity=0.313 Sum_probs=3.1
Q ss_pred CCEEEeeCCcC
Q 015481 312 LENFTYSYNFF 322 (406)
Q Consensus 312 L~~L~Ls~N~l 322 (406)
|+.|+|++|+|
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33333333333
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.38 E-value=0.16 Score=28.30 Aligned_cols=18 Identities=39% Similarity=0.726 Sum_probs=8.8
Q ss_pred CCCcEEEeecCcCCCCCch
Q 015481 167 PSLKFLDIRFNQFEGEIPS 185 (406)
Q Consensus 167 ~~L~~L~Ls~N~l~~~~p~ 185 (406)
++|++|+|++|.|+ .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 34555555555554 4443
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.38 E-value=0.16 Score=28.30 Aligned_cols=18 Identities=39% Similarity=0.726 Sum_probs=8.8
Q ss_pred CCCcEEEeecCcCCCCCch
Q 015481 167 PSLKFLDIRFNQFEGEIPS 185 (406)
Q Consensus 167 ~~L~~L~Ls~N~l~~~~p~ 185 (406)
++|++|+|++|.|+ .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 34555555555554 4443
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.28 E-value=0.28 Score=27.29 Aligned_cols=14 Identities=36% Similarity=0.653 Sum_probs=7.3
Q ss_pred CCCCEEeCcCCccc
Q 015481 286 KSLEQLNVAHNNLS 299 (406)
Q Consensus 286 ~~L~~L~Ls~N~l~ 299 (406)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.28 E-value=0.28 Score=27.29 Aligned_cols=14 Identities=36% Similarity=0.653 Sum_probs=7.3
Q ss_pred CCCCEEeCcCCccc
Q 015481 286 KSLEQLNVAHNNLS 299 (406)
Q Consensus 286 ~~L~~L~Ls~N~l~ 299 (406)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.15 E-value=0.1 Score=45.28 Aligned_cols=82 Identities=16% Similarity=0.146 Sum_probs=53.7
Q ss_pred cEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCc-cCCchhh-CCcCCceEeccccc-ccccCchhhcCCCCCcEE
Q 015481 96 TVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCG-TIPDSFR-NMQLLFELDVSNNQ-FSGCFPSVVLCLPSLKFL 172 (406)
Q Consensus 96 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~-~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L 172 (406)
.++.+|-++..|...--+.+.+++.++.|.+.++.--+ .--+.++ -.++|+.|++++|. ||..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 57888888888876555667778888888887775321 1111121 24678888888764 665444556677888877
Q ss_pred EeecC
Q 015481 173 DIRFN 177 (406)
Q Consensus 173 ~Ls~N 177 (406)
.+.+=
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 77653
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.26 E-value=0.22 Score=27.18 Aligned_cols=16 Identities=25% Similarity=0.565 Sum_probs=7.2
Q ss_pred CCCCEEeCcCCccccc
Q 015481 286 KSLEQLNVAHNNLSGA 301 (406)
Q Consensus 286 ~~L~~L~Ls~N~l~~~ 301 (406)
++|++|+|++|+|++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 4455555555555433
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.32 E-value=0.22 Score=43.26 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=15.2
Q ss_pred CCCCEEeCcCC-cccccCchhhcCCCCCCEEEee
Q 015481 286 KSLEQLNVAHN-NLSGAIPNSICCLPKLENFTYS 318 (406)
Q Consensus 286 ~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls 318 (406)
++|+.|+|++| +|+..--..+..+++|+.|.+.
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 45555555544 3443333344444555544443
No 83
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=81.23 E-value=1 Score=44.96 Aligned_cols=107 Identities=17% Similarity=0.093 Sum_probs=58.7
Q ss_pred ccEEEcccccCCcC--CchhHHhcccccceeeeccC-CCcccC----hhhhccCCCCcEEEeecCC-CCCccchhhcC-C
Q 015481 215 VSVLVLANNNFDSC--LPPSLTKMAGTLNEIILANA-KLKGCL----LKDIGLLNQVTVFDVSFNN-LVGSLPESMGN-M 285 (406)
Q Consensus 215 L~~L~l~~n~l~~~--~p~~l~~l~~~L~~L~l~~n-~l~~~~----~~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~-l 285 (406)
++.+.+.++.-... +-....... .|+.|+++++ ...... ......+.+|+.|+++++. ++...-..+.. +
T Consensus 190 L~~l~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c 268 (482)
T KOG1947|consen 190 LKRLSLSGCSKITDDSLDALALKCP-NLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRC 268 (482)
T ss_pred hhHhhhcccccCChhhHHHHHhhCc-hhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhC
Confidence 56666665533222 122233333 7888888763 211111 1233456777888888777 55443333333 6
Q ss_pred CCCCEEeCcCCc-ccccCc-hhhcCCCCCCEEEeeCCcC
Q 015481 286 KSLEQLNVAHNN-LSGAIP-NSICCLPKLENFTYSYNFF 322 (406)
Q Consensus 286 ~~L~~L~Ls~N~-l~~~~p-~~l~~l~~L~~L~Ls~N~l 322 (406)
++|++|.+.++. ++..-- .....+++|++|+++++..
T Consensus 269 ~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 269 PNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred CCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 778888877665 543322 2234567788888876644
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=80.32 E-value=1.2 Score=25.00 Aligned_cols=17 Identities=24% Similarity=0.194 Sum_probs=13.0
Q ss_pred CCCeeeCCCCCCCCCCC
Q 015481 331 KLKVKDDRQNCIPNRPF 347 (406)
Q Consensus 331 ~L~~L~l~~N~l~~~p~ 347 (406)
+|+.|++++|+|+.+|.
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 57778888888888873
No 85
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=75.36 E-value=2.1 Score=42.63 Aligned_cols=126 Identities=13% Similarity=0.085 Sum_probs=76.5
Q ss_pred cCeeeccccccccC---CCCCCCCCCccEEEcccc-cCCcCCc---hhHHhcccccceeeeccCC-CcccChhhhcc-CC
Q 015481 192 LDALFLNNNKFTSS---LPNNIGNSPVSVLVLANN-NFDSCLP---PSLTKMAGTLNEIILANAK-LKGCLLKDIGL-LN 262 (406)
Q Consensus 192 L~~L~L~~n~l~~~---~~~~~~~~~L~~L~l~~n-~l~~~~p---~~l~~l~~~L~~L~l~~n~-l~~~~~~~l~~-l~ 262 (406)
|+.+.+..+.-... .+.......|+.|+++++ ......+ ..+.....+|+.|+++.+. ++...-..+.. ++
T Consensus 190 L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~ 269 (482)
T KOG1947|consen 190 LKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCP 269 (482)
T ss_pred hhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCC
Confidence 77777776643222 122233455999999873 2211111 1233333489999999998 66554444443 88
Q ss_pred CCcEEEeecCC-CCCccc-hhhcCCCCCCEEeCcCCccccc--CchhhcCCCCCCEEEe
Q 015481 263 QVTVFDVSFNN-LVGSLP-ESMGNMKSLEQLNVAHNNLSGA--IPNSICCLPKLENFTY 317 (406)
Q Consensus 263 ~L~~L~Ls~N~-l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~L 317 (406)
+|+.|.+.++. ++...- .....++.|++|+|+++..... +.....++++|+.+.+
T Consensus 270 ~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 270 NLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred CcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 99999988777 554332 3345678899999998865311 3333445676666554
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=75.09 E-value=2.2 Score=23.89 Aligned_cols=13 Identities=31% Similarity=0.271 Sum_probs=6.3
Q ss_pred CCCEEEeeCCcCC
Q 015481 311 KLENFTYSYNFFC 323 (406)
Q Consensus 311 ~L~~L~Ls~N~l~ 323 (406)
+|+.|++++|+|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4445555555443
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=74.00 E-value=2 Score=42.97 Aligned_cols=63 Identities=22% Similarity=0.252 Sum_probs=29.5
Q ss_pred CCCCcEEEeecCCCCCc--cchhhcCCCCCCEEeCcCC--cccccCchhhc--CCCCCCEEEeeCCcCCcC
Q 015481 261 LNQVTVFDVSFNNLVGS--LPESMGNMKSLEQLNVAHN--NLSGAIPNSIC--CLPKLENFTYSYNFFCTE 325 (406)
Q Consensus 261 l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~Ls~N--~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~ 325 (406)
.+.+..+.|++|++... +...-...++|+.|+|++| .+. --.++. +...|++|-+.+|.++..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccccc
Confidence 44555555666655411 1111123456666666666 332 111221 223456666666666553
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=67.63 E-value=4.1 Score=23.10 Aligned_cols=13 Identities=23% Similarity=0.225 Sum_probs=7.3
Q ss_pred CCCEEEeeCCcCC
Q 015481 311 KLENFTYSYNFFC 323 (406)
Q Consensus 311 ~L~~L~Ls~N~l~ 323 (406)
+|++|||++|.|.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555666655553
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=52.29 E-value=7.2 Score=39.18 Aligned_cols=60 Identities=28% Similarity=0.371 Sum_probs=27.4
Q ss_pred CcCCceEecccccccccC--chhhcCCCCCcEEEeecC--cCCCCCchhh---hccccCeeeccccccc
Q 015481 142 MQLLFELDVSNNQFSGCF--PSVVLCLPSLKFLDIRFN--QFEGEIPSAV---FDLKLDALFLNNNKFT 203 (406)
Q Consensus 142 l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~Ls~N--~l~~~~p~~~---~~l~L~~L~L~~n~l~ 203 (406)
.+.+..+.|++|++.... ...-...++|+.|+|++| .+. ...++ ..++|++|.+.+|.+.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccc
Confidence 344555556666554211 111122456666666666 222 11122 2233666666666554
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=45.75 E-value=52 Score=32.73 Aligned_cols=109 Identities=17% Similarity=0.154 Sum_probs=57.6
Q ss_pred ccEEEcccccCCcCCchhHH-hcccccceeeeccCCCc-----ccChhhh----ccCCCCcEEEeecCCCCCccchh---
Q 015481 215 VSVLVLANNNFDSCLPPSLT-KMAGTLNEIILANAKLK-----GCLLKDI----GLLNQVTVFDVSFNNLVGSLPES--- 281 (406)
Q Consensus 215 L~~L~l~~n~l~~~~p~~l~-~l~~~L~~L~l~~n~l~-----~~~~~~l----~~l~~L~~L~Ls~N~l~~~~p~~--- 281 (406)
++++.+..|.+.++.-.... ...+..+.+.+.+-.-. +.....+ ....-+..+.++.|.+....-..
T Consensus 356 ~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~ 435 (553)
T KOG4242|consen 356 VQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINK 435 (553)
T ss_pred eeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHh
Confidence 66777777776654332211 11114555555433221 1000000 11223566777888776333222
Q ss_pred hcCCCCCCEEeCcCCccccc----CchhhcCCCCCCEEEeeCCcCC
Q 015481 282 MGNMKSLEQLNVAHNNLSGA----IPNSICCLPKLENFTYSYNFFC 323 (406)
Q Consensus 282 l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~ 323 (406)
+..-+.+..|++++|..... +|..+..-.+++.+..+.|...
T Consensus 436 l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 436 LLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred hccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 34557899999999987522 4555555566777766666543
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=34.63 E-value=28 Score=42.04 Aligned_cols=32 Identities=28% Similarity=0.361 Sum_probs=26.0
Q ss_pred EcCCCcCCccCCchhhCCcCCceEeccccccc
Q 015481 125 HINSNRFCGTIPDSFRNMQLLFELDVSNNQFS 156 (406)
Q Consensus 125 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 156 (406)
||++|+|+..-+..|..+.+|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57888888655667888888999999988876
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=30.49 E-value=42 Score=33.39 Aligned_cols=108 Identities=19% Similarity=0.144 Sum_probs=52.9
Q ss_pred CCCcEEEeecCcCCCCCchhhhccccCeeeccccccccCC----CCCCCCCCccEEEcccccCCcCCchhHHhccc--cc
Q 015481 167 PSLKFLDIRFNQFEGEIPSAVFDLKLDALFLNNNKFTSSL----PNNIGNSPVSVLVLANNNFDSCLPPSLTKMAG--TL 240 (406)
Q Consensus 167 ~~L~~L~Ls~N~l~~~~p~~~~~l~L~~L~L~~n~l~~~~----~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~--~L 240 (406)
+.+++++++.|.+..+.|..+...... +.+..+.++... +..-+...+.+++++.|.....+|..+..... .+
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~p-l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~vl 243 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNP-LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVL 243 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCc-cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhhh
Confidence 456777777777765555433332211 334444433211 11112233667777777776666654433321 34
Q ss_pred ceeeeccCCCccc---ChhhhccCCCCcEEEeecCCCC
Q 015481 241 NEIILANAKLKGC---LLKDIGLLNQVTVFDVSFNNLV 275 (406)
Q Consensus 241 ~~L~l~~n~l~~~---~~~~l~~l~~L~~L~Ls~N~l~ 275 (406)
+.++.+...++-. -+...+.-+.|+..+++.|..+
T Consensus 244 ~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s 281 (553)
T KOG4242|consen 244 FKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTS 281 (553)
T ss_pred hcccccccccchhhcccccccccccccchhhhccCCCC
Confidence 5555555444311 1223344456666677666553
No 93
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=30.21 E-value=33 Score=33.57 Aligned_cols=246 Identities=16% Similarity=0.100 Sum_probs=142.6
Q ss_pred CCCcEEEEECCCCCc-cccCcccc-cCCCCCCEEEcCCC-cCCccCCch-hhCCcCCceEeccccc-cccc-CchhhcCC
Q 015481 93 DCLTVAGIDLNQANI-AGTLPEKL-GLLQDLALFHINSN-RFCGTIPDS-FRNMQLLFELDVSNNQ-FSGC-FPSVVLCL 166 (406)
Q Consensus 93 ~~~~l~~L~L~~n~l-~~~~p~~l-~~l~~L~~L~L~~n-~l~~~~p~~-~~~l~~L~~L~Ls~N~-l~~~-~p~~l~~l 166 (406)
++++++.|++.++.. +...-..+ ..+.+|++|++..+ .++...-.. ...+++|++|+++.+. |++. +-..+.++
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~ 241 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC 241 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence 678888888888752 22111112 35788999999884 455433332 2467889999998875 4431 11234566
Q ss_pred CCCcEEEeecCcCCCCCchhhhcc-----ccCeeecccccc-ccCCCCCC--CCCCccEEEcccccCC-cCCchhHHhcc
Q 015481 167 PSLKFLDIRFNQFEGEIPSAVFDL-----KLDALFLNNNKF-TSSLPNNI--GNSPVSVLVLANNNFD-SCLPPSLTKMA 237 (406)
Q Consensus 167 ~~L~~L~Ls~N~l~~~~p~~~~~l-----~L~~L~L~~n~l-~~~~~~~~--~~~~L~~L~l~~n~l~-~~~p~~l~~l~ 237 (406)
..++.+.+.++.=. --..+... .+..+++..+.. +...--.+ .-..++.++.+++... ...-..+.+-.
T Consensus 242 ~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~ 319 (483)
T KOG4341|consen 242 KELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHC 319 (483)
T ss_pred hhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCC
Confidence 77777766654311 11112111 155555555432 21110001 1234788888876553 32334555555
Q ss_pred cccceeeeccCCC-cccChhhh-ccCCCCcEEEeecCCCCC--ccchhhcCCCCCCEEeCcCCcccccC-----chhhcC
Q 015481 238 GTLNEIILANAKL-KGCLLKDI-GLLNQVTVFDVSFNNLVG--SLPESMGNMKSLEQLNVAHNNLSGAI-----PNSICC 308 (406)
Q Consensus 238 ~~L~~L~l~~n~l-~~~~~~~l-~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~-----p~~l~~ 308 (406)
.+|+.|-+..++. +..-...+ .++..|+.+++..+...- .+-..-.+++.|+.|.|+++.+.... ...-..
T Consensus 320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~ 399 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS 399 (483)
T ss_pred CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence 6899999998874 22111222 357889999988876541 12222346789999999988653221 223356
Q ss_pred CCCCCEEEeeCCcCCcCCC-----cCCCCCeeeCCCC
Q 015481 309 LPKLENFTYSYNFFCTEPL-----ACLKLKVKDDRQN 340 (406)
Q Consensus 309 l~~L~~L~Ls~N~l~~~~~-----~~~~L~~L~l~~N 340 (406)
+..|+.+.|++........ .+.+|+.+++-+-
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 7888899998887654322 5777888777554
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=27.92 E-value=43 Score=40.60 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=27.3
Q ss_pred EeecCCCCCccchhhcCCCCCCEEeCcCCccc
Q 015481 268 DVSFNNLVGSLPESMGNMKSLEQLNVAHNNLS 299 (406)
Q Consensus 268 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 299 (406)
||++|+|+..-+..|..+++|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 58899999555567888999999999999875
No 95
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=25.74 E-value=1.1e+02 Score=18.27 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=14.1
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHh
Q 015481 1 MTNKNNPSLNLALCGSLLLSIILLL 25 (406)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~ 25 (406)
|+.| |..-++....+.++++.+|
T Consensus 1 meek--p~Gal~vv~iLt~~ILvFW 23 (34)
T PF08113_consen 1 MEEK--PKGALGVVMILTAFILVFW 23 (34)
T ss_dssp ---S--THHHHHHHHHHHHHHHHHH
T ss_pred CCCC--CcceeeeHHHHHHHHHHHH
Confidence 5555 6676777777777777666
No 96
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=22.68 E-value=61 Score=17.65 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=7.5
Q ss_pred CCCCEEeCcCCc
Q 015481 286 KSLEQLNVAHNN 297 (406)
Q Consensus 286 ~~L~~L~Ls~N~ 297 (406)
++|++|+|+++.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 456666666663
Done!