Query 015481
Match_columns 406
No_of_seqs 447 out of 4041
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 13:22:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015481.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015481hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 2.9E-42 9.8E-47 326.1 19.7 292 46-345 3-307 (313)
2 4eco_A Uncharacterized protein 100.0 1.1E-38 3.7E-43 329.5 18.1 292 43-346 24-449 (636)
3 3rgz_A Protein brassinosteroid 100.0 5.6E-37 1.9E-41 323.4 21.8 273 94-367 393-744 (768)
4 4ecn_A Leucine-rich repeat pro 100.0 6.2E-37 2.1E-41 323.3 19.6 308 43-362 263-709 (876)
5 3rgz_A Protein brassinosteroid 100.0 1.4E-36 4.8E-41 320.4 22.0 289 46-346 9-360 (768)
6 4fcg_A Uncharacterized protein 100.0 2.8E-36 9.6E-41 286.8 14.7 274 44-323 22-314 (328)
7 3v47_A TOLL-like receptor 5B a 100.0 5E-34 1.7E-38 282.9 24.3 273 95-367 30-412 (455)
8 2id5_A Lingo-1, leucine rich r 100.0 4.8E-32 1.6E-36 270.5 25.1 286 80-366 13-336 (477)
9 1ogq_A PGIP-2, polygalacturona 100.0 2.9E-33 9.9E-38 264.3 14.7 246 119-366 50-307 (313)
10 3v47_A TOLL-like receptor 5B a 100.0 4.8E-32 1.6E-36 268.7 21.7 254 92-346 76-411 (455)
11 3oja_B Anopheles plasmodium-re 100.0 7.1E-32 2.4E-36 276.7 20.5 268 95-366 51-361 (597)
12 3o6n_A APL1; leucine-rich repe 100.0 3.1E-31 1.1E-35 257.9 20.3 268 95-366 45-355 (390)
13 3t6q_A CD180 antigen; protein- 100.0 7.8E-31 2.7E-35 269.3 20.4 271 93-366 276-563 (606)
14 2z7x_B TOLL-like receptor 1, v 100.0 2.1E-30 7.1E-35 261.4 23.1 149 215-366 326-484 (520)
15 1xku_A Decorin; proteoglycan, 100.0 5E-30 1.7E-34 243.7 24.4 262 76-345 29-308 (330)
16 4g8a_A TOLL-like receptor 4; l 100.0 1.5E-30 5E-35 267.9 22.1 272 95-366 52-583 (635)
17 3o6n_A APL1; leucine-rich repe 100.0 2E-30 6.7E-35 252.2 21.1 268 94-366 68-377 (390)
18 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.1E-30 1.8E-34 261.1 24.4 149 215-366 355-513 (562)
19 2ft3_A Biglycan; proteoglycan, 100.0 2.9E-30 1E-34 245.6 21.1 259 77-343 32-307 (332)
20 2id5_A Lingo-1, leucine rich r 100.0 2.9E-30 9.9E-35 257.6 21.1 251 94-345 79-335 (477)
21 3vq2_A TLR4, TOLL-like recepto 100.0 3.4E-30 1.2E-34 264.5 22.1 135 232-367 419-562 (606)
22 4eco_A Uncharacterized protein 100.0 3.6E-31 1.2E-35 273.3 14.6 265 92-362 203-525 (636)
23 2z81_A CD282 antigen, TOLL-lik 100.0 4.5E-30 1.5E-34 260.5 20.6 175 77-252 3-210 (549)
24 3oja_B Anopheles plasmodium-re 100.0 5.6E-30 1.9E-34 262.6 20.9 268 94-366 74-383 (597)
25 1xku_A Decorin; proteoglycan, 100.0 1.8E-29 6.3E-34 239.8 22.8 260 96-364 32-307 (330)
26 2z80_A TOLL-like receptor 2, v 100.0 5.7E-30 1.9E-34 245.7 18.9 268 76-346 28-317 (353)
27 3t6q_A CD180 antigen; protein- 100.0 2.6E-29 8.8E-34 258.0 24.6 250 94-345 32-365 (606)
28 2z7x_B TOLL-like receptor 1, v 100.0 5.9E-30 2E-34 258.1 18.8 264 93-363 43-457 (520)
29 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2E-29 6.8E-34 256.7 22.1 125 239-363 354-486 (562)
30 2z66_A Variable lymphocyte rec 100.0 7.1E-30 2.4E-34 240.0 16.7 243 77-344 6-262 (306)
31 4fcg_A Uncharacterized protein 100.0 3.4E-29 1.2E-33 237.9 20.8 224 117-346 79-317 (328)
32 1ziw_A TOLL-like receptor 3; i 100.0 4.6E-29 1.6E-33 259.6 23.5 273 93-367 327-626 (680)
33 2ft3_A Biglycan; proteoglycan, 100.0 2.8E-29 9.5E-34 238.8 19.9 259 96-364 34-308 (332)
34 3j0a_A TOLL-like receptor 5; m 100.0 7E-29 2.4E-33 264.2 25.0 255 92-346 70-378 (844)
35 3zyi_A Leucine-rich repeat-con 100.0 2.7E-29 9.4E-34 249.0 20.1 228 94-324 74-304 (452)
36 2z81_A CD282 antigen, TOLL-lik 100.0 1E-28 3.5E-33 250.5 23.8 268 93-362 48-463 (549)
37 4ecn_A Leucine-rich repeat pro 100.0 2.5E-28 8.5E-33 257.8 24.7 265 93-364 513-841 (876)
38 2z66_A Variable lymphocyte rec 100.0 6E-29 2.1E-33 233.7 17.6 242 98-366 10-264 (306)
39 3zyj_A Leucine-rich repeat-con 100.0 1.5E-28 5.1E-33 242.8 20.6 227 94-323 63-292 (440)
40 3j0a_A TOLL-like receptor 5; m 100.0 2.8E-28 9.5E-33 259.6 24.1 268 95-363 24-375 (844)
41 1wwl_A Monocyte differentiatio 100.0 1.5E-30 5.1E-35 245.6 4.4 243 94-345 42-311 (312)
42 3zyi_A Leucine-rich repeat-con 100.0 3.8E-28 1.3E-32 240.7 21.4 239 100-344 59-304 (452)
43 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-27 5.5E-32 247.9 27.1 230 95-325 25-287 (680)
44 3zyj_A Leucine-rich repeat-con 100.0 6.7E-28 2.3E-32 238.2 21.6 239 99-343 47-292 (440)
45 2z63_A TOLL-like receptor 4, v 100.0 3.3E-28 1.1E-32 247.7 19.9 152 215-367 349-535 (570)
46 1ozn_A Reticulon 4 receptor; N 100.0 2E-27 7E-32 221.0 20.4 224 98-325 14-240 (285)
47 3vq2_A TLR4, TOLL-like recepto 100.0 4.7E-28 1.6E-32 248.6 16.5 247 92-345 304-560 (606)
48 2z80_A TOLL-like receptor 2, v 100.0 1.3E-27 4.6E-32 229.1 18.2 263 99-366 35-317 (353)
49 1ozn_A Reticulon 4 receptor; N 100.0 1.2E-27 4E-32 222.6 15.7 233 93-327 30-265 (285)
50 2o6q_A Variable lymphocyte rec 99.9 1.5E-26 5.1E-31 213.6 20.6 218 75-325 2-220 (270)
51 3o53_A Protein LRIM1, AGAP0063 99.9 1.2E-27 4E-32 226.2 12.9 236 96-343 11-250 (317)
52 4fmz_A Internalin; leucine ric 99.9 2.5E-26 8.5E-31 219.5 22.2 255 91-362 84-345 (347)
53 4fmz_A Internalin; leucine ric 99.9 6.7E-26 2.3E-30 216.5 24.4 255 93-364 64-325 (347)
54 4g8a_A TOLL-like receptor 4; l 99.9 2.2E-26 7.5E-31 236.7 22.1 106 239-344 470-581 (635)
55 2z63_A TOLL-like receptor 4, v 99.9 2.8E-26 9.5E-31 233.5 22.0 175 95-271 28-209 (570)
56 1o6v_A Internalin A; bacterial 99.9 1E-25 3.5E-30 224.1 24.3 239 93-346 66-347 (466)
57 1o6v_A Internalin A; bacterial 99.9 2.1E-25 7.1E-30 221.9 24.7 258 92-364 87-389 (466)
58 1wwl_A Monocyte differentiatio 99.9 6.8E-28 2.3E-32 227.3 6.2 223 96-325 64-311 (312)
59 3oja_A Leucine-rich immune mol 99.9 1.5E-26 5.3E-31 231.1 14.9 214 118-343 33-250 (487)
60 3bz5_A Internalin-J, INLJ; leu 99.9 3E-25 1E-29 220.0 23.7 227 94-346 41-270 (457)
61 2z62_A TOLL-like receptor 4, v 99.9 1.9E-25 6.5E-30 206.7 19.6 206 96-326 29-240 (276)
62 1jl5_A Outer protein YOPM; leu 99.9 2.6E-26 8.9E-31 227.5 12.5 242 93-360 32-287 (454)
63 3o53_A Protein LRIM1, AGAP0063 99.9 2.9E-26 9.9E-31 216.7 11.9 231 94-339 33-271 (317)
64 3oja_A Leucine-rich immune mol 99.9 4.9E-26 1.7E-30 227.5 13.3 230 94-337 33-269 (487)
65 3bz5_A Internalin-J, INLJ; leu 99.9 7.3E-25 2.5E-29 217.2 21.1 248 93-363 62-352 (457)
66 1jl5_A Outer protein YOPM; leu 99.9 1.5E-24 5.2E-29 214.7 23.1 54 311-364 318-371 (454)
67 2z62_A TOLL-like receptor 4, v 99.9 1.5E-24 5.2E-29 200.6 17.8 186 92-302 49-240 (276)
68 3goz_A Leucine-rich repeat-con 99.9 1.3E-25 4.5E-30 216.0 9.3 247 99-345 2-299 (362)
69 1p9a_G Platelet glycoprotein I 99.9 4.7E-24 1.6E-28 198.9 19.0 200 94-324 9-209 (290)
70 3g06_A SSPH2 (leucine-rich rep 99.9 1.1E-23 3.9E-28 215.3 23.1 234 96-364 62-298 (622)
71 3m19_A Variable lymphocyte rec 99.9 5.1E-24 1.7E-28 194.4 16.7 192 76-325 3-194 (251)
72 4glp_A Monocyte differentiatio 99.9 2.8E-24 9.5E-29 202.3 14.2 221 119-344 64-308 (310)
73 3rfs_A Internalin B, repeat mo 99.9 4.7E-24 1.6E-28 197.0 14.8 199 95-328 41-240 (272)
74 2o6q_A Variable lymphocyte rec 99.9 4.6E-23 1.6E-27 190.1 21.0 198 120-345 17-220 (270)
75 1p9a_G Platelet glycoprotein I 99.9 2.5E-23 8.5E-28 194.0 18.6 179 94-300 30-209 (290)
76 2ca6_A RAN GTPase-activating p 99.9 2E-25 6.8E-30 216.6 4.5 241 96-346 33-319 (386)
77 3rfs_A Internalin B, repeat mo 99.9 3E-24 1E-28 198.4 11.8 216 97-345 21-237 (272)
78 4glp_A Monocyte differentiatio 99.9 5E-24 1.7E-28 200.6 12.3 224 95-325 64-309 (310)
79 2ast_B S-phase kinase-associat 99.9 4.5E-25 1.6E-29 209.7 4.2 257 77-345 36-308 (336)
80 2ca6_A RAN GTPase-activating p 99.9 5.3E-25 1.8E-29 213.6 4.6 216 93-327 58-320 (386)
81 2xwt_C Thyrotropin receptor; s 99.9 3.1E-23 1E-27 187.7 15.9 198 96-320 32-236 (239)
82 1h6u_A Internalin H; cell adhe 99.9 8.8E-23 3E-27 192.0 18.7 194 95-327 41-234 (308)
83 2xwt_C Thyrotropin receptor; s 99.9 3.4E-23 1.2E-27 187.4 14.3 201 110-340 25-236 (239)
84 3goz_A Leucine-rich repeat-con 99.9 3.1E-24 1E-28 206.5 7.8 232 95-327 22-301 (362)
85 3g06_A SSPH2 (leucine-rich rep 99.9 2.9E-22 9.8E-27 204.9 20.3 218 93-345 79-299 (622)
86 1z7x_W Ribonuclease inhibitor; 99.9 5.5E-25 1.9E-29 218.1 -0.3 129 215-344 258-412 (461)
87 1z7x_W Ribonuclease inhibitor; 99.9 1.6E-24 5.4E-29 214.8 2.7 268 96-364 86-412 (461)
88 1h6u_A Internalin H; cell adhe 99.9 2.2E-22 7.5E-27 189.2 15.8 211 97-347 21-234 (308)
89 3cvr_A Invasion plasmid antige 99.9 1.3E-22 4.3E-27 205.3 11.0 196 79-309 49-253 (571)
90 2ast_B S-phase kinase-associat 99.9 5.5E-23 1.9E-27 195.3 7.1 230 95-329 70-312 (336)
91 4ay9_X Follicle-stimulating ho 99.9 1.5E-21 5E-26 186.9 16.0 238 78-321 9-257 (350)
92 3m19_A Variable lymphocyte rec 99.9 6.4E-21 2.2E-25 173.8 16.9 176 144-345 15-194 (251)
93 2o6s_A Variable lymphocyte rec 99.9 3E-21 1E-25 170.8 14.2 181 77-287 6-190 (208)
94 3cvr_A Invasion plasmid antige 99.9 4.4E-21 1.5E-25 194.0 15.0 182 119-327 59-247 (571)
95 4ay9_X Follicle-stimulating ho 99.9 2.6E-21 8.9E-26 185.2 12.4 235 98-340 12-256 (350)
96 1h6t_A Internalin B; cell adhe 99.8 4E-20 1.4E-24 172.3 16.0 173 116-326 43-216 (291)
97 2o6s_A Variable lymphocyte rec 99.8 2.8E-20 9.6E-25 164.5 13.5 180 98-311 10-190 (208)
98 3e6j_A Variable lymphocyte rec 99.8 1.4E-19 4.7E-24 162.7 15.7 164 70-301 11-174 (229)
99 1dce_A Protein (RAB geranylger 99.8 1.1E-22 3.7E-27 206.4 -5.5 200 116-337 346-567 (567)
100 1h6t_A Internalin B; cell adhe 99.8 1.6E-19 5.3E-24 168.3 14.2 190 120-347 25-217 (291)
101 1m9s_A Internalin B; cell inva 99.8 1.3E-19 4.5E-24 184.9 14.6 188 98-325 24-212 (605)
102 4b8c_D Glucose-repressible alc 99.8 2.3E-20 8E-25 194.8 3.8 256 48-323 131-404 (727)
103 1m9s_A Internalin B; cell inva 99.8 5.4E-19 1.9E-23 180.4 13.5 192 118-347 20-214 (605)
104 2v9t_B SLIT homolog 2 protein 99.8 3E-18 1E-22 153.0 13.9 127 215-342 34-164 (220)
105 2v70_A SLIT-2, SLIT homolog 2 99.8 2.1E-18 7.3E-23 153.9 12.9 153 146-325 14-168 (220)
106 3ogk_B Coronatine-insensitive 99.8 1E-19 3.5E-24 185.8 4.8 132 213-345 378-528 (592)
107 1xeu_A Internalin C; cellular 99.8 6E-19 2.1E-23 161.9 9.3 82 239-326 107-188 (263)
108 2v9t_B SLIT homolog 2 protein 99.8 2.6E-18 9E-23 153.3 13.2 153 146-324 14-166 (220)
109 2xot_A Amphoterin-induced prot 99.8 1.6E-18 5.4E-23 166.5 12.3 126 98-226 21-149 (361)
110 2v70_A SLIT-2, SLIT homolog 2 99.8 3.9E-18 1.3E-22 152.2 13.8 150 193-345 14-168 (220)
111 3e6j_A Variable lymphocyte rec 99.8 7.1E-18 2.4E-22 151.4 15.2 128 215-344 42-173 (229)
112 1dce_A Protein (RAB geranylger 99.8 2.6E-21 8.9E-26 196.3 -8.7 202 93-317 347-567 (567)
113 2xot_A Amphoterin-induced prot 99.8 4.2E-18 1.4E-22 163.5 13.6 173 78-251 18-202 (361)
114 3ogk_B Coronatine-insensitive 99.7 1.7E-19 5.7E-24 184.3 2.4 268 94-363 163-526 (592)
115 4ezg_A Putative uncharacterize 99.7 5.9E-18 2E-22 148.3 11.9 154 139-324 40-195 (197)
116 4ezg_A Putative uncharacterize 99.7 1.1E-17 3.6E-22 146.7 13.1 154 115-300 40-195 (197)
117 1xeu_A Internalin C; cellular 99.7 3.2E-18 1.1E-22 157.1 7.8 107 233-347 81-189 (263)
118 4b8c_D Glucose-repressible alc 99.7 4.6E-18 1.6E-22 177.5 8.2 194 96-299 192-404 (727)
119 1w8a_A SLIT protein; signaling 99.7 3.7E-17 1.3E-21 142.6 10.9 132 193-327 11-143 (192)
120 2ell_A Acidic leucine-rich nuc 99.7 1.8E-16 6.2E-21 135.0 11.2 131 214-347 25-164 (168)
121 2ell_A Acidic leucine-rich nuc 99.7 4.5E-16 1.5E-20 132.5 11.4 137 118-304 23-164 (168)
122 1w8a_A SLIT protein; signaling 99.6 8.7E-16 3E-20 133.9 12.5 129 98-229 11-142 (192)
123 2p1m_B Transport inhibitor res 99.6 2.4E-17 8.3E-22 168.2 1.3 200 141-343 287-519 (594)
124 2wfh_A SLIT homolog 2 protein 99.6 2.6E-15 8.8E-20 131.0 13.2 107 215-323 33-139 (193)
125 2wfh_A SLIT homolog 2 protein 99.6 2E-15 6.8E-20 131.7 11.9 124 216-344 13-140 (193)
126 2p1m_B Transport inhibitor res 99.6 1.7E-16 5.8E-21 162.0 4.5 123 239-362 373-518 (594)
127 2o6r_A Variable lymphocyte rec 99.6 4.6E-15 1.6E-19 127.3 12.7 107 239-345 29-139 (177)
128 2o6r_A Variable lymphocyte rec 99.6 5.7E-15 1.9E-19 126.8 13.2 132 193-327 10-141 (177)
129 2je0_A Acidic leucine-rich nuc 99.6 1.1E-15 3.9E-20 127.3 8.5 121 215-338 19-148 (149)
130 1ds9_A Outer arm dynein; leuci 99.6 6E-17 2.1E-21 141.9 0.3 83 117-202 16-105 (198)
131 1ds9_A Outer arm dynein; leuci 99.6 8.9E-17 3E-21 140.8 1.4 155 139-324 14-186 (198)
132 2je0_A Acidic leucine-rich nuc 99.6 3E-15 1E-19 124.7 9.4 127 167-319 17-149 (149)
133 3sb4_A Hypothetical leucine ri 99.5 6.5E-15 2.2E-19 139.4 8.7 223 94-327 48-314 (329)
134 1a9n_A U2A', U2A'; complex (nu 99.5 1.2E-14 4.2E-19 124.7 8.1 125 214-343 20-153 (176)
135 1a9n_A U2A', U2A'; complex (nu 99.5 1.1E-14 3.7E-19 125.0 5.4 133 162-323 14-153 (176)
136 3g39_A Variable lymphocyte rec 99.5 7.8E-14 2.7E-18 119.0 10.0 109 215-327 11-119 (170)
137 2r9u_A Variable lymphocyte rec 99.5 1.9E-13 6.5E-18 117.0 9.9 108 216-327 15-122 (174)
138 3sb4_A Hypothetical leucine ri 99.5 2.1E-13 7.1E-18 129.0 10.7 242 95-346 25-313 (329)
139 3g39_A Variable lymphocyte rec 99.4 3.7E-13 1.3E-17 114.7 10.8 103 98-203 12-115 (170)
140 4fdw_A Leucine rich hypothetic 99.4 5.7E-12 2E-16 122.2 18.4 237 96-346 114-361 (401)
141 2r9u_A Variable lymphocyte rec 99.4 8.1E-13 2.8E-17 113.1 11.0 103 98-203 15-118 (174)
142 4fdw_A Leucine rich hypothetic 99.4 7.6E-12 2.6E-16 121.4 18.1 221 96-327 136-362 (401)
143 2ifg_A High affinity nerve gro 99.3 3.4E-12 1.2E-16 121.3 10.9 96 106-203 20-116 (347)
144 3un9_A NLR family member X1; l 99.3 8E-14 2.8E-18 134.0 -1.3 63 239-301 184-254 (372)
145 2ifg_A High affinity nerve gro 99.3 8.7E-12 3E-16 118.5 10.9 104 217-324 12-117 (347)
146 3un9_A NLR family member X1; l 99.3 4.3E-13 1.5E-17 128.9 0.4 159 166-324 71-253 (372)
147 2ra8_A Uncharacterized protein 99.0 5.1E-10 1.8E-14 106.7 7.5 204 94-321 106-341 (362)
148 2ra8_A Uncharacterized protein 98.9 3.4E-09 1.2E-13 101.1 8.5 65 260-324 250-321 (362)
149 4fs7_A Uncharacterized protein 98.6 7E-07 2.4E-11 86.1 15.8 216 112-339 155-375 (394)
150 4gt6_A Cell surface protein; l 98.6 1.5E-06 5E-11 83.8 17.2 79 96-176 65-146 (394)
151 4fs7_A Uncharacterized protein 98.6 8.4E-07 2.9E-11 85.6 14.6 198 136-345 155-357 (394)
152 1io0_A Tropomodulin; LRR prote 98.5 3.2E-08 1.1E-12 85.1 3.4 84 239-322 66-163 (185)
153 4gt6_A Cell surface protein; l 98.5 1.4E-06 4.9E-11 83.9 15.0 239 91-340 83-367 (394)
154 1io0_A Tropomodulin; LRR prote 98.5 5.9E-08 2E-12 83.5 4.5 104 239-342 37-163 (185)
155 3rw6_A Nuclear RNA export fact 98.4 7.2E-08 2.5E-12 87.5 3.3 65 259-325 167-235 (267)
156 3rw6_A Nuclear RNA export fact 98.4 1.2E-07 4.1E-12 86.1 3.6 79 235-316 168-257 (267)
157 4h09_A Hypothetical leucine ri 98.2 0.00011 3.7E-09 70.1 20.1 97 239-338 241-341 (379)
158 4h09_A Hypothetical leucine ri 98.0 0.00035 1.2E-08 66.6 19.3 237 96-345 47-324 (379)
159 3e4g_A ATP synthase subunit S, 98.0 2.5E-06 8.4E-11 72.1 3.5 84 95-178 61-150 (176)
160 3e4g_A ATP synthase subunit S, 98.0 3E-06 1E-10 71.6 3.8 82 239-320 62-149 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.5 0.00012 4E-09 62.9 5.9 61 259-319 67-135 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.5 7.9E-05 2.7E-09 64.0 4.1 84 239-322 71-169 (197)
163 3rfe_A Platelet glycoprotein I 96.8 0.0019 6.4E-08 51.6 5.8 55 266-322 12-67 (130)
164 3rfe_A Platelet glycoprotein I 96.8 0.0019 6.5E-08 51.5 5.8 35 145-179 33-67 (130)
165 2lz0_A Uncharacterized protein 40.6 39 0.0013 24.7 4.6 38 137-175 14-51 (100)
166 2lz0_A Uncharacterized protein 40.0 86 0.0029 22.8 6.5 48 106-154 7-54 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.9e-42 Score=326.06 Aligned_cols=292 Identities=23% Similarity=0.405 Sum_probs=259.8
Q ss_pred chHHHHHHHHHHHHhccCCCCCCCCCCC-CCCCCC--cceeecCCCCCCCCCCcEEEEECCCCCccc--cCcccccCCCC
Q 015481 46 RLLKAYIALQFWKLSITSDPNGFTSNWC-GPNVCN--YTGVYCAPAPDDPDCLTVAGIDLNQANIAG--TLPEKLGLLQD 120 (406)
Q Consensus 46 ~~~~~~~~L~~~~~~~~~~~~~~~~~w~-~~~~c~--w~gv~c~~~~~~~~~~~l~~L~L~~n~l~~--~~p~~l~~l~~ 120 (406)
+..++.+||++||.++. ++. .+.+|. +.++|. |.||.|+... ...+|++|+|++|++.+ .+|+.|.++++
T Consensus 3 c~~~~~~aL~~~k~~~~-~~~-~l~~W~~~~~~C~~~w~gv~C~~~~---~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~ 77 (313)
T 1ogq_A 3 CNPQDKQALLQIKKDLG-NPT-TLSSWLPTTDCCNRTWLGVLCDTDT---QTYRVNNLDLSGLNLPKPYPIPSSLANLPY 77 (313)
T ss_dssp SCHHHHHHHHHHHHHTT-CCG-GGTTCCTTSCTTTTCSTTEEECCSS---SCCCEEEEEEECCCCSSCEECCGGGGGCTT
T ss_pred CCHHHHHHHHHHHHhcC-Ccc-cccCCCCCCCCCcCCCcceEeCCCC---CCceEEEEECCCCCccCCcccChhHhCCCC
Confidence 34578899999999984 444 567886 457898 9999997421 12589999999999999 89999999999
Q ss_pred CCEEEcCC-CcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEeecCcCCCCCchhhhccc-cCeeecc
Q 015481 121 LALFHINS-NRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLK-LDALFLN 198 (406)
Q Consensus 121 L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-L~~L~L~ 198 (406)
|++|++++ |.+.+.+|..|+++++|++|++++|.+++.+|..|..+++|++|++++|.+++.+|..+..++ |++|+++
T Consensus 78 L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 157 (313)
T 1ogq_A 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157 (313)
T ss_dssp CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc
Confidence 99999995 999999999999999999999999999999999999999999999999999999999999988 9999999
Q ss_pred ccccccCCCCCCCCC--CccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCC
Q 015481 199 NNKFTSSLPNNIGNS--PVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVG 276 (406)
Q Consensus 199 ~n~l~~~~~~~~~~~--~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 276 (406)
+|++++.+|..+... .|++|++++|.+++.+|..+..+. |++|++++|++++..+..+..+++|++|+|++|++++
T Consensus 158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~--L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN--LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235 (313)
T ss_dssp SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC--CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc--ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee
Confidence 999999999888764 599999999999988999888874 9999999999999899999999999999999999997
Q ss_pred ccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCCc---CCCCCeeeCCCCC-CCCC
Q 015481 277 SLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPLA---CLKLKVKDDRQNC-IPNR 345 (406)
Q Consensus 277 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~---~~~L~~L~l~~N~-l~~~ 345 (406)
.+|. +..+++|++|+|++|++++.+|..+..+++|++|++++|++++.+|. +.+|+.+++++|+ +.+.
T Consensus 236 ~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 236 DLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp BGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEEST
T ss_pred ecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCC
Confidence 6665 88899999999999999999999999999999999999999988874 4567777777775 4443
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.1e-38 Score=329.47 Aligned_cols=292 Identities=19% Similarity=0.300 Sum_probs=237.5
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCCCC-------CCC-CCCCCCc---ceeecCCCCCCCCCCcEEEEECCCCCccccC
Q 015481 43 PNPRLLKAYIALQFWKLSITSDPNGFTS-------NWC-GPNVCNY---TGVYCAPAPDDPDCLTVAGIDLNQANIAGTL 111 (406)
Q Consensus 43 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~-------~w~-~~~~c~w---~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~ 111 (406)
..+....++.||.+++.++.+..|.... +|. +.++|.| .||+|+. .++|+.|+|+++++.|.+
T Consensus 24 ~~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~------~~~V~~L~L~~~~l~g~l 97 (636)
T 4eco_A 24 RTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS------NGRVTGLSLEGFGASGRV 97 (636)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECT------TCCEEEEECTTSCCEEEE
T ss_pred hhhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcC------CCCEEEEEecCcccCCcC
Confidence 4456678999999999998766655433 796 5678999 9999974 269999999999999999
Q ss_pred cccccCCCCCCEEEcCCCc-------------------------------------------------------------
Q 015481 112 PEKLGLLQDLALFHINSNR------------------------------------------------------------- 130 (406)
Q Consensus 112 p~~l~~l~~L~~L~L~~n~------------------------------------------------------------- 130 (406)
|++|+++++|++|+|++|.
T Consensus 98 p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~ 177 (636)
T 4eco_A 98 PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK 177 (636)
T ss_dssp CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC
T ss_pred ChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccc
Confidence 9999999999999999884
Q ss_pred -----------------CCccCCchhhCCcCCceEeccccccccc-----------------Cchhhc--CCCCCcEEEe
Q 015481 131 -----------------FCGTIPDSFRNMQLLFELDVSNNQFSGC-----------------FPSVVL--CLPSLKFLDI 174 (406)
Q Consensus 131 -----------------l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-----------------~p~~l~--~l~~L~~L~L 174 (406)
+++ +|..|+++++|++|+|++|.+++. +|..+. ++++|++|+|
T Consensus 178 ~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L 256 (636)
T 4eco_A 178 SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV 256 (636)
T ss_dssp CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE
T ss_pred ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEe
Confidence 344 788899999999999999999985 898888 9999999999
Q ss_pred ecCcCCCCCchhhhccc-cCeeeccccc-ccc-CCCCCCCC-------CCccEEEcccccCCcCCch--hHHhcccccce
Q 015481 175 RFNQFEGEIPSAVFDLK-LDALFLNNNK-FTS-SLPNNIGN-------SPVSVLVLANNNFDSCLPP--SLTKMAGTLNE 242 (406)
Q Consensus 175 s~N~l~~~~p~~~~~l~-L~~L~L~~n~-l~~-~~~~~~~~-------~~L~~L~l~~n~l~~~~p~--~l~~l~~~L~~ 242 (406)
++|.+.+.+|..+..++ |++|++++|+ +++ .+|..++. .+|++|++++|.++ .+|. .+..+. +|++
T Consensus 257 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~-~L~~ 334 (636)
T 4eco_A 257 YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMK-KLGM 334 (636)
T ss_dssp ECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCT-TCCE
T ss_pred cCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCC-CCCE
Confidence 99999999999999888 9999999998 888 78877665 46999999999998 6887 888888 8999
Q ss_pred eeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCC-CCEEeCcCCcccccCchhhcCCC--CCCEEEeeC
Q 015481 243 IILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKS-LEQLNVAHNNLSGAIPNSICCLP--KLENFTYSY 319 (406)
Q Consensus 243 L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~ 319 (406)
|++++|+++|.+| .+..+++|++|+|++|+++ .+|..+..+++ |++|++++|.++ .+|..+..+. +|+.|++++
T Consensus 335 L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~ 411 (636)
T 4eco_A 335 LECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSY 411 (636)
T ss_dssp EECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCS
T ss_pred EeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcC
Confidence 9999999987777 7777888888888888887 77777777777 888888888777 6776665443 667777777
Q ss_pred CcCCcCCC-----------cCCCCCeeeCCCCCCCCCC
Q 015481 320 NFFCTEPL-----------ACLKLKVKDDRQNCIPNRP 346 (406)
Q Consensus 320 N~l~~~~~-----------~~~~L~~L~l~~N~l~~~p 346 (406)
|.+++.+| .+.+|+.|++++|+|+.+|
T Consensus 412 N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp 449 (636)
T 4eco_A 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP 449 (636)
T ss_dssp SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCC
T ss_pred CcCCCcchhhhcccccccccCCCCCEEECcCCccCcCC
Confidence 77666543 2235666666666666555
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.6e-37 Score=323.38 Aligned_cols=273 Identities=28% Similarity=0.422 Sum_probs=240.8
Q ss_pred CCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEE
Q 015481 94 CLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLD 173 (406)
Q Consensus 94 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 173 (406)
..+++.|++++|.+++.+|..+.++++|++|++++|.+++.+|..|+++++|++|++++|.+++.+|..+..+++|++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 45788899999999888888899999999999999999888898899999999999999999988898899999999999
Q ss_pred eecCcCCCCCchhhhccc-cCeeeccccccccCCCCCCCCCC-ccEEEcccccCCcCCchhHHhcccccceeeeccCCCc
Q 015481 174 IRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNSP-VSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLK 251 (406)
Q Consensus 174 Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~ 251 (406)
+++|.+++.+|..+..++ |++|++++|++++.+|..++..+ |++|++++|.+++.+|..+..+. +|++|++++|+++
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFN 551 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT-TCCEEECCSSEEE
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC-CCCEEECCCCccC
Confidence 999999988898888887 99999999999988888877654 99999999999988998888888 8999999999888
Q ss_pred ccChhhh----------------------------------------------------------------------ccC
Q 015481 252 GCLLKDI----------------------------------------------------------------------GLL 261 (406)
Q Consensus 252 ~~~~~~l----------------------------------------------------------------------~~l 261 (406)
+.+|..+ ..+
T Consensus 552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l 631 (768)
T 3rgz_A 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631 (768)
T ss_dssp SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence 7766543 335
Q ss_pred CCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC----cCCCCCeeeC
Q 015481 262 NQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL----ACLKLKVKDD 337 (406)
Q Consensus 262 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~L~~L~l 337 (406)
++|++|||++|+++|.+|..++.+++|+.|+|++|+++|.+|..++++++|+.|||++|+++|.+| .+..|+.|++
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence 779999999999999999999999999999999999999999999999999999999999999988 4678999999
Q ss_pred CCCCCCCC-CC--CCCcccccccccCCCCCCCC
Q 015481 338 RQNCIPNR-PF--QRSPMECKTFYSHPVDCGAS 367 (406)
Q Consensus 338 ~~N~l~~~-p~--~~~~~~~~~~~~np~~C~~~ 367 (406)
++|++++. |. ++..+....+.+||..||.+
T Consensus 712 s~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 712 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp CSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT
T ss_pred cCCcccccCCCchhhccCCHHHhcCCchhcCCC
Confidence 99999875 52 34455566789999999864
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.2e-37 Score=323.31 Aligned_cols=308 Identities=20% Similarity=0.289 Sum_probs=252.5
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCCCCCCCCCCC--CCc------------ceeecCCCCCCCCCCcEEEEECCCCCcc
Q 015481 43 PNPRLLKAYIALQFWKLSITSDPNGFTSNWCGPNV--CNY------------TGVYCAPAPDDPDCLTVAGIDLNQANIA 108 (406)
Q Consensus 43 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~w~~~~~--c~w------------~gv~c~~~~~~~~~~~l~~L~L~~n~l~ 108 (406)
......+++.||++||.++.+..|....+|...++ |.| .||+|+. ..+|+.|+|+++++.
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~------~~~V~~L~Ls~~~L~ 336 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN------NGRVTGLSLAGFGAK 336 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGGGCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT------TSCEEEEECTTTCCE
T ss_pred ccccchHHHHHHHHHHHHcCCCCCCcCCCcccccCCccccccccccccccCcCceEecC------CCCEEEEECccCCCC
Confidence 34566789999999999985432222222222355 999 9999984 259999999999999
Q ss_pred ccCcccccCCCCCCEEEc-CCCcCCcc-----------------------------------------------------
Q 015481 109 GTLPEKLGLLQDLALFHI-NSNRFCGT----------------------------------------------------- 134 (406)
Q Consensus 109 ~~~p~~l~~l~~L~~L~L-~~n~l~~~----------------------------------------------------- 134 (406)
|.+|+.|+++++|++|+| ++|.+.|.
T Consensus 337 G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~ 416 (876)
T 4ecn_A 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416 (876)
T ss_dssp EEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred CcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence 999999999999999999 77754333
Q ss_pred -----------------------CCchhhCCcCCceEecccccccc-----------------cCchhhc--CCCCCcEE
Q 015481 135 -----------------------IPDSFRNMQLLFELDVSNNQFSG-----------------CFPSVVL--CLPSLKFL 172 (406)
Q Consensus 135 -----------------------~p~~~~~l~~L~~L~Ls~N~l~~-----------------~~p~~l~--~l~~L~~L 172 (406)
+|..|+++++|++|+|++|++++ .+|..++ ++++|++|
T Consensus 417 i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L 496 (876)
T 4ecn_A 417 IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496 (876)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred cccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEE
Confidence 78889999999999999999998 3888877 99999999
Q ss_pred EeecCcCCCCCchhhhccc-cCeeeccccc-ccc-CCCCCCCC--------CCccEEEcccccCCcCCch--hHHhcccc
Q 015481 173 DIRFNQFEGEIPSAVFDLK-LDALFLNNNK-FTS-SLPNNIGN--------SPVSVLVLANNNFDSCLPP--SLTKMAGT 239 (406)
Q Consensus 173 ~Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~-l~~-~~~~~~~~--------~~L~~L~l~~n~l~~~~p~--~l~~l~~~ 239 (406)
+|++|.+.+.+|..+..++ |++|++++|+ +++ .+|..++. .+|++|++++|.++ .+|. .+..+. +
T Consensus 497 ~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~-~ 574 (876)
T 4ecn_A 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMV-K 574 (876)
T ss_dssp EEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCT-T
T ss_pred ECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCC-C
Confidence 9999999999999999998 9999999998 887 67765443 25999999999999 6888 899988 9
Q ss_pred cceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCC-CCEEeCcCCcccccCchhhcCCCC--CCEEE
Q 015481 240 LNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKS-LEQLNVAHNNLSGAIPNSICCLPK--LENFT 316 (406)
Q Consensus 240 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~ 316 (406)
|++|++++|+++ .+| .++.+++|+.|+|++|+++ .+|..+..+++ |++|+|++|.++ .+|..+..+.. |+.|+
T Consensus 575 L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~ 650 (876)
T 4ecn_A 575 LGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVD 650 (876)
T ss_dssp CCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEE
T ss_pred CCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEE
Confidence 999999999999 577 8899999999999999999 89988999998 999999999998 88887766654 88888
Q ss_pred eeCCcCCcCCCcCC---------CCCeeeCCCCCCCCCCC----CCCcccccccccCCC
Q 015481 317 YSYNFFCTEPLACL---------KLKVKDDRQNCIPNRPF----QRSPMECKTFYSHPV 362 (406)
Q Consensus 317 Ls~N~l~~~~~~~~---------~L~~L~l~~N~l~~~p~----~~~~~~~~~~~~np~ 362 (406)
+++|.+++.+|.++ +|+.|++++|.|+.+|. ..+.+....+.+|.+
T Consensus 651 Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L 709 (876)
T 4ecn_A 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM 709 (876)
T ss_dssp CCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCC
T ss_pred CcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcC
Confidence 88888887665332 67777777777777662 233444445555544
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.4e-36 Score=320.35 Aligned_cols=289 Identities=24% Similarity=0.317 Sum_probs=187.3
Q ss_pred chHHHHHHHHHHHHhccCCCCCCCCCCC-CCCCCCcceeecCCCCCCCCCCcEEEEECCCCCcccc---Cc---------
Q 015481 46 RLLKAYIALQFWKLSITSDPNGFTSNWC-GPNVCNYTGVYCAPAPDDPDCLTVAGIDLNQANIAGT---LP--------- 112 (406)
Q Consensus 46 ~~~~~~~~L~~~~~~~~~~~~~~~~~w~-~~~~c~w~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~---~p--------- 112 (406)
...++++||++||+++. |+. .+++|. +.++|.|.||+|+. ++|+.|+|+++.+.|. +|
T Consensus 9 ~~~~~~~all~~k~~~~-~~~-~l~~W~~~~~~C~w~gv~C~~-------~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L 79 (768)
T 3rgz_A 9 SLYREIHQLISFKDVLP-DKN-LLPDWSSNKNPCTFDGVTCRD-------DKVTSIDLSSKPLNVGFSAVSSSLLSLTGL 79 (768)
T ss_dssp CHHHHHHHHHHHHTTCS-CTT-SSTTCCTTSCGGGSTTEEEET-------TEEEEEECTTSCCCEEHHHHHHHTTTCTTC
T ss_pred CCHHHHHHHHHHHhhCC-Ccc-cccCCCCCCCCcCCcceEECC-------CcEEEEECCCCCcCCccCccChhHhccCcc
Confidence 34678899999999996 665 788996 56899999999962 4888888888877765 33
Q ss_pred --------------ccccCCCCCCEEEcCCCcCCccCCc--hhhCCcCCceEecccccccccCchhh-cCCCCCcEEEee
Q 015481 113 --------------EKLGLLQDLALFHINSNRFCGTIPD--SFRNMQLLFELDVSNNQFSGCFPSVV-LCLPSLKFLDIR 175 (406)
Q Consensus 113 --------------~~l~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls 175 (406)
+.|+.+++|++|+|++|.+++.+|. .++++++|++|++++|.+++..|..+ ..+++|++|+++
T Consensus 80 ~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls 159 (768)
T 3rgz_A 80 ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159 (768)
T ss_dssp CEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECC
T ss_pred cccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECC
Confidence 4667777888888888888777777 77788888888888888777666554 667777777777
Q ss_pred cCcCCCCCchh---hhccc-cCeeeccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCc
Q 015481 176 FNQFEGEIPSA---VFDLK-LDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLK 251 (406)
Q Consensus 176 ~N~l~~~~p~~---~~~l~-L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~ 251 (406)
+|.+++..+.. +..++ |++|++++|.+.+..+. ....+|++|++++|.+.+.+|. +..+. +|++|++++|+++
T Consensus 160 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~-l~~l~-~L~~L~Ls~n~l~ 236 (768)
T 3rgz_A 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV-SRCVNLEFLDVSSNNFSTGIPF-LGDCS-ALQHLDISGNKLS 236 (768)
T ss_dssp SSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC-TTCTTCCEEECCSSCCCSCCCB-CTTCC-SCCEEECCSSCCC
T ss_pred CCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc-ccCCcCCEEECcCCcCCCCCcc-cccCC-CCCEEECcCCcCC
Confidence 77777655554 33333 55555555555443322 1122245555555555444443 44444 4555555555544
Q ss_pred ccChhhhccC----------------------CCCcEEEeecCCCCCccchhhcCC-CCCCEEeCcCCcccccCchhhcC
Q 015481 252 GCLLKDIGLL----------------------NQVTVFDVSFNNLVGSLPESMGNM-KSLEQLNVAHNNLSGAIPNSICC 308 (406)
Q Consensus 252 ~~~~~~l~~l----------------------~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~ 308 (406)
+.+|..+..+ ++|++|+|++|++++.+|..+... ++|++|+|++|++++.+|..+..
T Consensus 237 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~ 316 (768)
T 3rgz_A 237 GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316 (768)
T ss_dssp SCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG
T ss_pred CcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc
Confidence 4444444444 455555555555555555555543 66777777777776666777777
Q ss_pred CCCCCEEEeeCCcCCcCCC-----cCCCCCeeeCCCCCCC-CCC
Q 015481 309 LPKLENFTYSYNFFCTEPL-----ACLKLKVKDDRQNCIP-NRP 346 (406)
Q Consensus 309 l~~L~~L~Ls~N~l~~~~~-----~~~~L~~L~l~~N~l~-~~p 346 (406)
+++|++|++++|.+++.+| .+.+|+.|++++|.++ .+|
T Consensus 317 l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p 360 (768)
T 3rgz_A 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 360 (768)
T ss_dssp CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCC
T ss_pred CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcccc
Confidence 7777777777777765444 3556777777777766 344
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=2.8e-36 Score=286.79 Aligned_cols=274 Identities=20% Similarity=0.275 Sum_probs=195.8
Q ss_pred CcchHHHHHHHHHHHHhccCCCCCCCCCCC-----CCCCCCcceeecCCCCC---CCCCCcEEEEECCCCCccccCcccc
Q 015481 44 NPRLLKAYIALQFWKLSITSDPNGFTSNWC-----GPNVCNYTGVYCAPAPD---DPDCLTVAGIDLNQANIAGTLPEKL 115 (406)
Q Consensus 44 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~w~-----~~~~c~w~gv~c~~~~~---~~~~~~l~~L~L~~n~l~~~~p~~l 115 (406)
...+.++..+|+.||..+..++.++...|+ ..++|.|.|+.|...+. .....+++.|+|++|++. .+|+.+
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l 100 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA 100 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence 446677889999999998778878788884 45789999999952110 012358999999999998 788889
Q ss_pred cCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEeecCcCCCCCchhhhc------
Q 015481 116 GLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFD------ 189 (406)
Q Consensus 116 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~------ 189 (406)
+++++|++|++++|.++ .+|..++++++|++|+|++|.++ .+|..+..+++|++|++++|.+.+.+|..+..
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 99999999999999999 89999999999999999999998 78888999999999999999888888887654
Q ss_pred ---cc-cCeeeccccccccCCCCCCCCCC-ccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCC
Q 015481 190 ---LK-LDALFLNNNKFTSSLPNNIGNSP-VSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQV 264 (406)
Q Consensus 190 ---l~-L~~L~L~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L 264 (406)
++ |++|++++|+++ .+|..+...+ |++|++++|.+++ +|..+..+. +|++|++++|++.+.+|..++.+++|
T Consensus 179 ~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~-~L~~L~Ls~n~~~~~~p~~~~~l~~L 255 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLP-KLEELDLRGCTALRNYPPIFGGRAPL 255 (328)
T ss_dssp EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCT-TCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCC-CCCEEECcCCcchhhhHHHhcCCCCC
Confidence 44 666666666665 4554444332 5666666666554 444455555 56666666655555555555555666
Q ss_pred cEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCC
Q 015481 265 TVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFC 323 (406)
Q Consensus 265 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 323 (406)
++|+|++|++.+.+|..+..+++|++|+|++|++.+.+|..+.++++|+.+++..|.+.
T Consensus 256 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 66666665555555555555666666666665555556666656666655555555443
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5e-34 Score=282.93 Aligned_cols=273 Identities=21% Similarity=0.246 Sum_probs=184.7
Q ss_pred CcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccC-CchhhCCcCCceEecccccccccCchhhcCCCCCcEEE
Q 015481 95 LTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTI-PDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLD 173 (406)
Q Consensus 95 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 173 (406)
+++++|+|++|.+++..|..|.++++|++|++++|.+.+.+ +..|.++++|++|+|++|++++..|..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 45666666666666555555666666666666666554333 33455555555555555555555555555555555555
Q ss_pred eecCcCCC--------------------------CCchh-hhccc-cCeeeccccccccCCCCCCCC-------------
Q 015481 174 IRFNQFEG--------------------------EIPSA-VFDLK-LDALFLNNNKFTSSLPNNIGN------------- 212 (406)
Q Consensus 174 Ls~N~l~~--------------------------~~p~~-~~~l~-L~~L~L~~n~l~~~~~~~~~~------------- 212 (406)
+++|.+++ ..|.. +..++ |++|++++|++++..+..+..
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 55555543 33332 33333 555555555554443332221
Q ss_pred ----------------------CCccEEEcccccCCcCCchhHHhc----------------------------------
Q 015481 213 ----------------------SPVSVLVLANNNFDSCLPPSLTKM---------------------------------- 236 (406)
Q Consensus 213 ----------------------~~L~~L~l~~n~l~~~~p~~l~~l---------------------------------- 236 (406)
..|++|++++|.+.+..|..+...
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 124555555555544444433322
Q ss_pred ----ccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCC
Q 015481 237 ----AGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKL 312 (406)
Q Consensus 237 ----~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 312 (406)
..+|++|++++|++++..+..+..+++|++|+|++|++++..|..|..+++|++|+|++|.+++..|..+..+++|
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 349 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence 0157777777777777778888999999999999999998888899999999999999999998888899999999
Q ss_pred CEEEeeCCcCCcCCC----cCCCCCeeeCCCCCCCCCCC----CCCcccccccccCCCCCCCC
Q 015481 313 ENFTYSYNFFCTEPL----ACLKLKVKDDRQNCIPNRPF----QRSPMECKTFYSHPVDCGAS 367 (406)
Q Consensus 313 ~~L~Ls~N~l~~~~~----~~~~L~~L~l~~N~l~~~p~----~~~~~~~~~~~~np~~C~~~ 367 (406)
++|+|++|++++.++ .+++|+.|++++|+|+++|. ..+.++...+.+||+.|...
T Consensus 350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999998866 56789999999999999874 23566677899999998654
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.8e-32 Score=270.50 Aligned_cols=286 Identities=18% Similarity=0.159 Sum_probs=226.6
Q ss_pred cceeecCCCC--C--CCCCCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccc
Q 015481 80 YTGVYCAPAP--D--DPDCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQF 155 (406)
Q Consensus 80 w~gv~c~~~~--~--~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 155 (406)
|..+.|.... . .....+++.|+|++|++++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 5667775321 1 11235789999999999988888899999999999999999988888899999999999999999
Q ss_pred cccCchhhcCCCCCcEEEeecCcCCCCCchhhhccc-cCeeeccccccccCCCCCCCCCC-ccEEEcccccCCcCCchhH
Q 015481 156 SGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNSP-VSVLVLANNNFDSCLPPSL 233 (406)
Q Consensus 156 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~p~~l 233 (406)
++..+..|.++++|++|+|++|.+.+..+..+..+. |++|++++|.+.+..+..+.... |+.|++++|.+++..+..+
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 172 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL 172 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHH
T ss_pred CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHh
Confidence 876666788899999999999999877777787777 99999999999877777776644 8999999998887555567
Q ss_pred HhcccccceeeeccCCCcccChhhhccCCC------------------------CcEEEeecCCCCCccchhhcCCCCCC
Q 015481 234 TKMAGTLNEIILANAKLKGCLLKDIGLLNQ------------------------VTVFDVSFNNLVGSLPESMGNMKSLE 289 (406)
Q Consensus 234 ~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~------------------------L~~L~Ls~N~l~~~~p~~l~~l~~L~ 289 (406)
..+. +|+.|++++|++.+..+..+..+++ |++|+|++|++++..+..+..+++|+
T Consensus 173 ~~l~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 251 (477)
T 2id5_A 173 SHLH-GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251 (477)
T ss_dssp TTCT-TCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCC
T ss_pred cccC-CCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccC
Confidence 6776 8888888888877765555555554 55555555666643335688889999
Q ss_pred EEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC----cCCCCCeeeCCCCCCCCCCC----CCCcccccccccCC
Q 015481 290 QLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL----ACLKLKVKDDRQNCIPNRPF----QRSPMECKTFYSHP 361 (406)
Q Consensus 290 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~L~~L~l~~N~l~~~p~----~~~~~~~~~~~~np 361 (406)
+|+|++|.+++..+..+..+++|+.|+|++|++++..+ .+.+|+.|++++|.|++++. ..+.++...+.+||
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp EEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred eeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 99999999987777788899999999999999988766 46789999999999998873 22455567788999
Q ss_pred CCCCC
Q 015481 362 VDCGA 366 (406)
Q Consensus 362 ~~C~~ 366 (406)
+.|..
T Consensus 332 l~c~c 336 (477)
T 2id5_A 332 LACDC 336 (477)
T ss_dssp EECSG
T ss_pred ccCcc
Confidence 88853
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.9e-33 Score=264.29 Aligned_cols=246 Identities=20% Similarity=0.297 Sum_probs=224.2
Q ss_pred CCCCEEEcCCCcCCc--cCCchhhCCcCCceEeccc-ccccccCchhhcCCCCCcEEEeecCcCCCCCchhhhccc-cCe
Q 015481 119 QDLALFHINSNRFCG--TIPDSFRNMQLLFELDVSN-NQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLK-LDA 194 (406)
Q Consensus 119 ~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-L~~ 194 (406)
.+++.|++++|.+++ .+|..|+++++|++|++++ |.+++.+|..|..+++|++|++++|.+++.+|..+..++ |++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 589999999999998 8999999999999999995 999999999999999999999999999999999999988 999
Q ss_pred eeccccccccCCCCCCCCCC-ccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCC
Q 015481 195 LFLNNNKFTSSLPNNIGNSP-VSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNN 273 (406)
Q Consensus 195 L~L~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~ 273 (406)
|++++|.+++.+|..+...+ |++|++++|.+++.+|..+..+..+|++|++++|++++.+|..+..+. |++|+|++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99999999999998887654 999999999999889999998876899999999999998999999997 9999999999
Q ss_pred CCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC----cCCCCCeeeCCCCCCCC-CCCC
Q 015481 274 LVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL----ACLKLKVKDDRQNCIPN-RPFQ 348 (406)
Q Consensus 274 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~L~~L~l~~N~l~~-~p~~ 348 (406)
+++..|..+..+++|++|+|++|.+++.+|. +..+++|++|++++|.+++.+| .+.+|+.|++++|+|++ +|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 9999999999999999999999999976665 8889999999999999998777 46789999999999984 4532
Q ss_pred --CCcccccccccCCCCCCC
Q 015481 349 --RSPMECKTFYSHPVDCGA 366 (406)
Q Consensus 349 --~~~~~~~~~~~np~~C~~ 366 (406)
.+.+....+.+||+.|+.
T Consensus 288 ~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp TTGGGSCGGGTCSSSEEEST
T ss_pred ccccccChHHhcCCCCccCC
Confidence 344556788999999975
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.8e-32 Score=268.70 Aligned_cols=254 Identities=17% Similarity=0.197 Sum_probs=222.5
Q ss_pred CCCCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCch--hhCCcCCceEecccccccccCchh-hcCCCC
Q 015481 92 PDCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDS--FRNMQLLFELDVSNNQFSGCFPSV-VLCLPS 168 (406)
Q Consensus 92 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~ 168 (406)
..++++++|+|++|.+++..|..|+++++|++|++++|.+++.++.. |.++++|++|++++|++++..|.. +..+++
T Consensus 76 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 155 (455)
T 3v47_A 76 RGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR 155 (455)
T ss_dssp TTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred cccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc
Confidence 35789999999999999888999999999999999999999765554 899999999999999999887766 889999
Q ss_pred CcEEEeecCcCCCCCchhhhcc----------------------------------c-cCeeeccccccccCCCCCC---
Q 015481 169 LKFLDIRFNQFEGEIPSAVFDL----------------------------------K-LDALFLNNNKFTSSLPNNI--- 210 (406)
Q Consensus 169 L~~L~Ls~N~l~~~~p~~~~~l----------------------------------~-L~~L~L~~n~l~~~~~~~~--- 210 (406)
|++|++++|.+++..+..+..+ . |++|++++|++++..+..+
T Consensus 156 L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 235 (455)
T 3v47_A 156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA 235 (455)
T ss_dssp CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH
T ss_pred ccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc
Confidence 9999999999997777655543 3 8888888887765332211
Q ss_pred -------------------------------------CCCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCccc
Q 015481 211 -------------------------------------GNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGC 253 (406)
Q Consensus 211 -------------------------------------~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~ 253 (406)
....+++|++++|.+.+..|..+..+. +|++|++++|++++.
T Consensus 236 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~ 314 (455)
T 3v47_A 236 IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT-DLEQLTLAQNEINKI 314 (455)
T ss_dssp TTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT-TCCEEECTTSCCCEE
T ss_pred ccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCC-CCCEEECCCCccccc
Confidence 113589999999999998888888888 999999999999998
Q ss_pred ChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC----cC
Q 015481 254 LLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL----AC 329 (406)
Q Consensus 254 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~ 329 (406)
.+..+..+++|++|+|++|.+++..|..+..+++|++|+|++|++++..|..+..+++|++|++++|+|++.++ .+
T Consensus 315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 394 (455)
T 3v47_A 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL 394 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccC
Confidence 88899999999999999999998888999999999999999999998889999999999999999999999876 46
Q ss_pred CCCCeeeCCCCCCCCCC
Q 015481 330 LKLKVKDDRQNCIPNRP 346 (406)
Q Consensus 330 ~~L~~L~l~~N~l~~~p 346 (406)
++|+.|++++|+++...
T Consensus 395 ~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 395 TSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp TTCCEEECCSSCBCCCT
T ss_pred CcccEEEccCCCcccCC
Confidence 78999999999998764
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=7.1e-32 Score=276.70 Aligned_cols=268 Identities=16% Similarity=0.172 Sum_probs=165.4
Q ss_pred CcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEe
Q 015481 95 LTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDI 174 (406)
Q Consensus 95 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 174 (406)
.+++.++++++.+....+..+..+++|++|++++|.+++..+..|+.+++|++|+|++|.+++..|..|..+++|++|+|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 34444455544444333333444445555555555554444444444555555555555554444444444555555555
Q ss_pred ecCcCCCCCchh-hhccc-cCeeeccccccccCCCCCCCCCC-ccEEEcccccCCcCCchhHHh----------------
Q 015481 175 RFNQFEGEIPSA-VFDLK-LDALFLNNNKFTSSLPNNIGNSP-VSVLVLANNNFDSCLPPSLTK---------------- 235 (406)
Q Consensus 175 s~N~l~~~~p~~-~~~l~-L~~L~L~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~p~~l~~---------------- 235 (406)
++|.++ .+|.. +..++ |++|++++|.+++..|..+...+ |++|++++|.+++.....+..
T Consensus 131 ~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~ 209 (597)
T 3oja_B 131 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 209 (597)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred eCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccC
Confidence 555544 22222 23333 55555555544444444333322 444444444444321111110
Q ss_pred --------------------cccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcC
Q 015481 236 --------------------MAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAH 295 (406)
Q Consensus 236 --------------------l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 295 (406)
...+|+.|++++|++++ +..+..+++|+.|+|++|.+++..|..|..+++|++|+|++
T Consensus 210 ~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 287 (597)
T 3oja_B 210 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287 (597)
T ss_dssp CTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT
T ss_pred CchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC
Confidence 01157777777777776 46788899999999999999988888999999999999999
Q ss_pred CcccccCchhhcCCCCCCEEEeeCCcCCcCCC---cCCCCCeeeCCCCCCCCCCC-CCCcccccccccCCCCCCC
Q 015481 296 NNLSGAIPNSICCLPKLENFTYSYNFFCTEPL---ACLKLKVKDDRQNCIPNRPF-QRSPMECKTFYSHPVDCGA 366 (406)
Q Consensus 296 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~L~~L~l~~N~l~~~p~-~~~~~~~~~~~~np~~C~~ 366 (406)
|.+++ +|..+..+++|+.|+|++|.++++++ .+++|+.|++++|.|++++. ..+.+....+.+||+.|..
T Consensus 288 N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 288 NRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp SCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHHH
T ss_pred CCCCC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCCChh
Confidence 99984 67777889999999999999987665 46789999999999988863 3455666788888888843
No 12
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=3.1e-31 Score=257.90 Aligned_cols=268 Identities=16% Similarity=0.177 Sum_probs=173.5
Q ss_pred CcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEe
Q 015481 95 LTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDI 174 (406)
Q Consensus 95 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 174 (406)
.+++.|+++++.+....+..+..+++|++|++++|.+++..+..|+++++|++|++++|.+++..|..|..+++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 44555555555554332233455555555555555555444445555555555555555555444444555555555555
Q ss_pred ecCcCCCCCchh-hhccc-cCeeeccccccccCCCCCCCCC-CccEEEcccccCCcCCchhHHhc---------------
Q 015481 175 RFNQFEGEIPSA-VFDLK-LDALFLNNNKFTSSLPNNIGNS-PVSVLVLANNNFDSCLPPSLTKM--------------- 236 (406)
Q Consensus 175 s~N~l~~~~p~~-~~~l~-L~~L~L~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~p~~l~~l--------------- 236 (406)
++|.++ .+|.. +..++ |++|++++|.+++..+..+... +|++|++++|.+++.....+..+
T Consensus 125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~ 203 (390)
T 3o6n_A 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 203 (390)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred CCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCC
Confidence 555555 33333 23333 5555555555554444434332 25555555555443211111110
Q ss_pred ---------------------ccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcC
Q 015481 237 ---------------------AGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAH 295 (406)
Q Consensus 237 ---------------------~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 295 (406)
..+|++|++++|++++. ..+..+++|++|+|++|.+++..|..+..+++|++|+|++
T Consensus 204 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (390)
T 3o6n_A 204 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281 (390)
T ss_dssp CSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCS
T ss_pred CCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCC
Confidence 11577777777777763 5788899999999999999988889999999999999999
Q ss_pred CcccccCchhhcCCCCCCEEEeeCCcCCcCCC---cCCCCCeeeCCCCCCCCCCC-CCCcccccccccCCCCCCC
Q 015481 296 NNLSGAIPNSICCLPKLENFTYSYNFFCTEPL---ACLKLKVKDDRQNCIPNRPF-QRSPMECKTFYSHPVDCGA 366 (406)
Q Consensus 296 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~L~~L~l~~N~l~~~p~-~~~~~~~~~~~~np~~C~~ 366 (406)
|+++ .+|..+..+++|++|++++|.+++.++ .+++|+.|++++|.|+.++. ..+.+....+.+||+.|..
T Consensus 282 n~l~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 282 NRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp SCCC-EEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHHH
T ss_pred CcCc-ccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCccchh
Confidence 9998 567777889999999999999998765 46789999999999998873 3455666789999999954
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=7.8e-31 Score=269.31 Aligned_cols=271 Identities=18% Similarity=0.174 Sum_probs=214.1
Q ss_pred CCCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCch-hhcCCCCCcE
Q 015481 93 DCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPS-VVLCLPSLKF 171 (406)
Q Consensus 93 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~ 171 (406)
.+++++.|++++|.++ .+|+.+..+++|++|++++|.+++..|..+.++++|++|++++|.+.+.++. .+..+++|++
T Consensus 276 ~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 354 (606)
T 3t6q_A 276 CFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354 (606)
T ss_dssp TCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCE
T ss_pred cccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCE
Confidence 4567777777777776 6677777777777777777777766666777777788888887777755544 3777888888
Q ss_pred EEeecCcCCCCC--chhhhccc-cCeeeccccccccCCCCCCCCCC-ccEEEcccccCCcCCchh-HHhcccccceeeec
Q 015481 172 LDIRFNQFEGEI--PSAVFDLK-LDALFLNNNKFTSSLPNNIGNSP-VSVLVLANNNFDSCLPPS-LTKMAGTLNEIILA 246 (406)
Q Consensus 172 L~Ls~N~l~~~~--p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~p~~-l~~l~~~L~~L~l~ 246 (406)
|++++|.+.+.. +..+..++ |++|++++|++.+..+..+...+ |++|++++|.+.+..+.. +..+. +|++|+++
T Consensus 355 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~ 433 (606)
T 3t6q_A 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH-LLKVLNLS 433 (606)
T ss_dssp EECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT-TCCEEECT
T ss_pred EECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc-cCCEEECC
Confidence 888888877443 55666666 88888888888877777776544 899999999887765544 66666 89999999
Q ss_pred cCCCcccChhhhccCCCCcEEEeecCCCCCc---cchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCC
Q 015481 247 NAKLKGCLLKDIGLLNQVTVFDVSFNNLVGS---LPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFC 323 (406)
Q Consensus 247 ~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~---~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 323 (406)
+|.+++..+..+..+++|++|+|++|++++. .+..+..+++|++|++++|++++..|..+..+++|++|++++|+++
T Consensus 434 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 513 (606)
T 3t6q_A 434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513 (606)
T ss_dssp TCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccC
Confidence 9999888888889999999999999999863 2356888999999999999999888889999999999999999999
Q ss_pred cCCC----cCCCCCeeeCCCCCCCCCCCC----CCcccccccccCCCCCCC
Q 015481 324 TEPL----ACLKLKVKDDRQNCIPNRPFQ----RSPMECKTFYSHPVDCGA 366 (406)
Q Consensus 324 ~~~~----~~~~L~~L~l~~N~l~~~p~~----~~~~~~~~~~~np~~C~~ 366 (406)
+.++ .+..| .|++++|.+++++.. .+.++...+.+||+.|..
T Consensus 514 ~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 514 SSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp GGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred cCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 8776 45677 899999999988632 244566789999999854
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.1e-30 Score=261.36 Aligned_cols=149 Identities=19% Similarity=0.203 Sum_probs=91.6
Q ss_pred ccEEEcccccCCcCCchhHHhcccccceeeeccCCCcc--cChhhhccCCCCcEEEeecCCCCCccchh-hcCCCCCCEE
Q 015481 215 VSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKG--CLLKDIGLLNQVTVFDVSFNNLVGSLPES-MGNMKSLEQL 291 (406)
Q Consensus 215 L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L 291 (406)
|++|++++|.+++.+|..+..+. +|++|++++|++++ .+|..+..+++|++|+|++|.+++.+|.. +..+++|++|
T Consensus 326 L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L 404 (520)
T 2z7x_B 326 FLHLDFSNNLLTDTVFENCGHLT-ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404 (520)
T ss_dssp CCEEECCSSCCCTTTTTTCCCCS-SCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEE
T ss_pred ccEEEeECCccChhhhhhhccCC-CCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEE
Confidence 45555555555555555555554 55555555555554 23344555555666666666655434433 4555566666
Q ss_pred eCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC---cCCCCCeeeCCCCCCCCCCCC----CCcccccccccCCCCC
Q 015481 292 NVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL---ACLKLKVKDDRQNCIPNRPFQ----RSPMECKTFYSHPVDC 364 (406)
Q Consensus 292 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~L~~L~l~~N~l~~~p~~----~~~~~~~~~~~np~~C 364 (406)
++++|++++.+|..+. ++|+.|++++|+|+.++. .+++|+.|++++|+|+.+|.. .+.+....+.+||+.|
T Consensus 405 ~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 405 NMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp ECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence 6666666555544432 577777777777775544 466788899999998888753 3445566789999998
Q ss_pred CC
Q 015481 365 GA 366 (406)
Q Consensus 365 ~~ 366 (406)
..
T Consensus 483 ~c 484 (520)
T 2z7x_B 483 SC 484 (520)
T ss_dssp CH
T ss_pred cC
Confidence 54
No 15
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5e-30 Score=243.72 Aligned_cols=262 Identities=19% Similarity=0.212 Sum_probs=213.1
Q ss_pred CCCCcceeecCCCC--CCC--CCCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecc
Q 015481 76 NVCNYTGVYCAPAP--DDP--DCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVS 151 (406)
Q Consensus 76 ~~c~w~gv~c~~~~--~~~--~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 151 (406)
..|.|+.+.|.... ..+ ..++++.|++++|++++..+..|.++++|++|++++|.+++..|..|+++++|++|+++
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 34788888886421 111 23578999999999997777789999999999999999998778889999999999999
Q ss_pred cccccccCchhhcCCCCCcEEEeecCcCCCCCchhhhccc-cCeeecccccccc--CCCCCCCCC-CccEEEcccccCCc
Q 015481 152 NNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLK-LDALFLNNNKFTS--SLPNNIGNS-PVSVLVLANNNFDS 227 (406)
Q Consensus 152 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~--~~~~~~~~~-~L~~L~l~~n~l~~ 227 (406)
+|+++ .+|..+. ++|++|++++|.+++..+..+..++ |++|++++|.+.. ..+..+... +|++|++++|.++.
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 99998 5565543 7899999999999866666677777 9999999999863 455555544 49999999999876
Q ss_pred CCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhc
Q 015481 228 CLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSIC 307 (406)
Q Consensus 228 ~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 307 (406)
+|..+. . +|++|++++|++++..+..+..+++|++|+|++|.+++..+..+..+++|++|+|++|+++ .+|..+.
T Consensus 186 -l~~~~~--~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 260 (330)
T 1xku_A 186 -IPQGLP--P-SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260 (330)
T ss_dssp -CCSSCC--T-TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred -CCcccc--c-cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc
Confidence 665544 3 8999999999999877888999999999999999999777778889999999999999998 8888899
Q ss_pred CCCCCCEEEeeCCcCCcCCCc----------CCCCCeeeCCCCCCCCC
Q 015481 308 CLPKLENFTYSYNFFCTEPLA----------CLKLKVKDDRQNCIPNR 345 (406)
Q Consensus 308 ~l~~L~~L~Ls~N~l~~~~~~----------~~~L~~L~l~~N~l~~~ 345 (406)
.+++|++|++++|.|+++++. ...++.+++++|.+...
T Consensus 261 ~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~ 308 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308 (330)
T ss_dssp TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccc
Confidence 999999999999999887652 24577888888877643
No 16
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=1.5e-30 Score=267.87 Aligned_cols=272 Identities=18% Similarity=0.180 Sum_probs=194.4
Q ss_pred CcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEe
Q 015481 95 LTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDI 174 (406)
Q Consensus 95 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 174 (406)
.++++|||++|+|++..+.+|.++++|++|+|++|+|++..+.+|.++++|++|+|++|+|++..+..|.++++|++|+|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 47888888888888777778888888888888888888766777888888888888888888766677888888888888
Q ss_pred ecCcCCCCCchhhhccc-cCeeeccccccccC-CCCCCCCC-CccEEEcccccCCcCCchhHHhcc--------------
Q 015481 175 RFNQFEGEIPSAVFDLK-LDALFLNNNKFTSS-LPNNIGNS-PVSVLVLANNNFDSCLPPSLTKMA-------------- 237 (406)
Q Consensus 175 s~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~-~~~~~~~~-~L~~L~l~~n~l~~~~p~~l~~l~-------------- 237 (406)
++|++++..+..+..++ |++|++++|.+++. .|..+... .|++|++++|++++..+..+..+.
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 88888744444566666 77777777777542 34444432 366666666655443222211100
Q ss_pred --------------------------------------------------------------------------------
Q 015481 238 -------------------------------------------------------------------------------- 237 (406)
Q Consensus 238 -------------------------------------------------------------------------------- 237 (406)
T Consensus 212 ~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~ 291 (635)
T 4g8a_A 212 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 291 (635)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence
Q ss_pred -------------------------------------------------------------------------------c
Q 015481 238 -------------------------------------------------------------------------------G 238 (406)
Q Consensus 238 -------------------------------------------------------------------------------~ 238 (406)
+
T Consensus 292 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~ 371 (635)
T 4g8a_A 292 DYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 371 (635)
T ss_dssp CSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCT
T ss_pred cccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccccc
Confidence 0
Q ss_pred ccceeeeccCCC--------------------------------------------------------------------
Q 015481 239 TLNEIILANAKL-------------------------------------------------------------------- 250 (406)
Q Consensus 239 ~L~~L~l~~n~l-------------------------------------------------------------------- 250 (406)
+|+.|++++|.+
T Consensus 372 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ 451 (635)
T 4g8a_A 372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 451 (635)
T ss_dssp TCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEE
T ss_pred ccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccc
Confidence 122222222222
Q ss_pred ------cccChhhhccCCCCcEEEeecCCCC-CccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCC
Q 015481 251 ------KGCLLKDIGLLNQVTVFDVSFNNLV-GSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFC 323 (406)
Q Consensus 251 ------~~~~~~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 323 (406)
.+..+..+..++.|+.|+|++|++. +..|..+..+++|++|+|++|+|++..|..|.++++|++|+|++|+|+
T Consensus 452 ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~ 531 (635)
T 4g8a_A 452 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 531 (635)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred ccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCC
Confidence 1112222334455666666666543 345677888999999999999999888999999999999999999999
Q ss_pred cCCC----cCCCCCeeeCCCCCCCCCCCC-C----CcccccccccCCCCCCC
Q 015481 324 TEPL----ACLKLKVKDDRQNCIPNRPFQ-R----SPMECKTFYSHPVDCGA 366 (406)
Q Consensus 324 ~~~~----~~~~L~~L~l~~N~l~~~p~~-~----~~~~~~~~~~np~~C~~ 366 (406)
++++ .+.+|+.|++++|+|++++.. . ..++...+.+|||.|..
T Consensus 532 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 532 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp BCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred CCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 9887 467899999999999988532 1 34666789999999964
No 17
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=2e-30 Score=252.22 Aligned_cols=268 Identities=20% Similarity=0.178 Sum_probs=196.0
Q ss_pred CCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEE
Q 015481 94 CLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLD 173 (406)
Q Consensus 94 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 173 (406)
+++++.|++++|.+.+..+..|..+++|++|++++|.+++..|..|+++++|++|++++|.++...+..|..+++|++|+
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence 45677777777777666556677777777777777777765566667777777777777777644334456677777777
Q ss_pred eecCcCCCCCchhhhccc-cCeeeccccccccCCCCCCC--------------------------------------CCC
Q 015481 174 IRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIG--------------------------------------NSP 214 (406)
Q Consensus 174 Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~--------------------------------------~~~ 214 (406)
+++|.+++..+..+..++ |++|++++|++++.....+. ...
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 227 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 227 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSS
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccccccc
Confidence 777777654455555555 66666666666532111111 124
Q ss_pred ccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCc
Q 015481 215 VSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVA 294 (406)
Q Consensus 215 L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 294 (406)
|+.|++++|.+++. ..+..+. +|++|++++|.+++..+..+..+++|++|+|++|+++ .+|..+..+++|++|+|+
T Consensus 228 L~~L~l~~n~l~~~--~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~ 303 (390)
T 3o6n_A 228 LTILKLQHNNLTDT--AWLLNYP-GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLS 303 (390)
T ss_dssp CCEEECCSSCCCCC--GGGGGCT-TCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECC
T ss_pred ccEEECCCCCCccc--HHHcCCC-CccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECC
Confidence 77788888888763 4677777 9999999999999988999999999999999999999 577778889999999999
Q ss_pred CCcccccCchhhcCCCCCCEEEeeCCcCCcCCC-cCCCCCeeeCCCCCCCCCC--CCCCcccccccccCCCCCCC
Q 015481 295 HNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL-ACLKLKVKDDRQNCIPNRP--FQRSPMECKTFYSHPVDCGA 366 (406)
Q Consensus 295 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~L~~L~l~~N~l~~~p--~~~~~~~~~~~~~np~~C~~ 366 (406)
+|+++ .+|..+..+++|+.|++++|.+++.+. .+++|+.|++++|+++... .....+....+..++..|..
T Consensus 304 ~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 304 HNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp SSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCCSCCCT
T ss_pred CCcce-ecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCccchhHHHHHHHHHhhcccccCceecc
Confidence 99999 788888899999999999999998765 6789999999999887542 11122222345566666754
No 18
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=5.1e-30 Score=261.07 Aligned_cols=149 Identities=19% Similarity=0.258 Sum_probs=83.1
Q ss_pred ccEEEcccccCCcCCchhHHhcccccceeeeccCCCccc--ChhhhccCCCCcEEEeecCCCCCccch-hhcCCCCCCEE
Q 015481 215 VSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGC--LLKDIGLLNQVTVFDVSFNNLVGSLPE-SMGNMKSLEQL 291 (406)
Q Consensus 215 L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L 291 (406)
|++|++++|.+++.+|..+..+. +|++|++++|++++. +|..+..+++|++|+|++|++++.+|. .+..+++|++|
T Consensus 355 L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L 433 (562)
T 3a79_B 355 FTFLNFTQNVFTDSVFQGCSTLK-RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433 (562)
T ss_dssp CCEEECCSSCCCTTTTTTCCSCS-SCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEE
T ss_pred ceEEECCCCccccchhhhhcccC-CCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEE
Confidence 44444444444444444444444 444444444444431 123344444555555555555442332 24444555555
Q ss_pred eCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC---cCCCCCeeeCCCCCCCCCCCC----CCcccccccccCCCCC
Q 015481 292 NVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL---ACLKLKVKDDRQNCIPNRPFQ----RSPMECKTFYSHPVDC 364 (406)
Q Consensus 292 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~L~~L~l~~N~l~~~p~~----~~~~~~~~~~~np~~C 364 (406)
++++|++++.+|..+. ++|+.|++++|+|+.+++ .+++|+.|++++|+|+.+|.. .+.+....+.+||+.|
T Consensus 434 ~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 434 NLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp ECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred ECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence 5555555444433322 577777777777776554 456788889999998888753 2345556789999998
Q ss_pred CC
Q 015481 365 GA 366 (406)
Q Consensus 365 ~~ 366 (406)
..
T Consensus 512 ~c 513 (562)
T 3a79_B 512 TC 513 (562)
T ss_dssp CH
T ss_pred Cc
Confidence 53
No 19
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.9e-30 Score=245.59 Aligned_cols=259 Identities=19% Similarity=0.224 Sum_probs=220.6
Q ss_pred CCCcceeecCCCC--CC--CCCCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEeccc
Q 015481 77 VCNYTGVYCAPAP--DD--PDCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSN 152 (406)
Q Consensus 77 ~c~w~gv~c~~~~--~~--~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 152 (406)
.|.|..+.|.... .. ...++++.|++++|.+.+..+..|.++++|++|++++|.+++..|..|+++++|++|++++
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 3789999886422 11 1245899999999999988888899999999999999999988888999999999999999
Q ss_pred ccccccCchhhcCCCCCcEEEeecCcCCCCCchhhhccc-cCeeeccccccc--cCCCCCCCCCCccEEEcccccCCcCC
Q 015481 153 NQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLK-LDALFLNNNKFT--SSLPNNIGNSPVSVLVLANNNFDSCL 229 (406)
Q Consensus 153 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~--~~~~~~~~~~~L~~L~l~~n~l~~~~ 229 (406)
|+++ .+|..+. ++|++|++++|.+++..+..+..++ |++|++++|.++ +..+..+...+|++|++++|.+++ +
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~-l 187 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-I 187 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS-C
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc-c
Confidence 9998 5665554 8999999999999955455577777 999999999996 366777777789999999999987 6
Q ss_pred chhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCC
Q 015481 230 PPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCL 309 (406)
Q Consensus 230 p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 309 (406)
|..+. . +|++|++++|++++..+..+..+++|++|+|++|++++..+..+..+++|++|+|++|+++ .+|..+..+
T Consensus 188 ~~~~~--~-~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 263 (332)
T 2ft3_A 188 PKDLP--E-TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDL 263 (332)
T ss_dssp CSSSC--S-SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGC
T ss_pred Ccccc--C-CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcC
Confidence 66554 3 8999999999999987888999999999999999999877778999999999999999999 889899999
Q ss_pred CCCCEEEeeCCcCCcCCCc----------CCCCCeeeCCCCCCC
Q 015481 310 PKLENFTYSYNFFCTEPLA----------CLKLKVKDDRQNCIP 343 (406)
Q Consensus 310 ~~L~~L~Ls~N~l~~~~~~----------~~~L~~L~l~~N~l~ 343 (406)
++|++|++++|.|++.++. ...|+.+++++|.+.
T Consensus 264 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred ccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 9999999999999987752 245788999999886
No 20
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=2.9e-30 Score=257.61 Aligned_cols=251 Identities=15% Similarity=0.120 Sum_probs=177.0
Q ss_pred CCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEE
Q 015481 94 CLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLD 173 (406)
Q Consensus 94 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 173 (406)
+.+|+.|+|++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|+
T Consensus 79 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 158 (477)
T 2id5_A 79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT 158 (477)
T ss_dssp CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred CccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEE
Confidence 34455555555544433333344455555555555555544444455555555555555555544445555555555555
Q ss_pred eecCcCCCCCchhhhccc-cCeeeccccccccCCCCCCCCC-CccEEEcccccCCcCCchhHHhcccccceeeeccCCCc
Q 015481 174 IRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNS-PVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLK 251 (406)
Q Consensus 174 Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~ 251 (406)
+++|.+++..+..+..++ |+.|++++|.+.+..+..+... .|+.|++++|.+.+.++..+.... +|++|++++|+++
T Consensus 159 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~ 237 (477)
T 2id5_A 159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLT 237 (477)
T ss_dssp EESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTC-CCSEEEEESSCCC
T ss_pred CCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCc-cccEEECcCCccc
Confidence 555555533333444444 6666666666665544445443 378888888777777777766666 8999999999999
Q ss_pred ccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC----
Q 015481 252 GCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL---- 327 (406)
Q Consensus 252 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~---- 327 (406)
+..+..+..+++|++|+|++|.+++..+..+..+++|++|+|++|++++..|..|..+++|+.|+|++|.|++.++
T Consensus 238 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 317 (477)
T 2id5_A 238 AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH 317 (477)
T ss_dssp SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBS
T ss_pred ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcC
Confidence 8666789999999999999999997777889999999999999999998889999999999999999999999876
Q ss_pred cCCCCCeeeCCCCCCCCC
Q 015481 328 ACLKLKVKDDRQNCIPNR 345 (406)
Q Consensus 328 ~~~~L~~L~l~~N~l~~~ 345 (406)
.+.+|+.|++++|.++..
T Consensus 318 ~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 318 SVGNLETLILDSNPLACD 335 (477)
T ss_dssp CGGGCCEEECCSSCEECS
T ss_pred CCcccCEEEccCCCccCc
Confidence 456899999999988743
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=3.4e-30 Score=264.52 Aligned_cols=135 Identities=14% Similarity=0.061 Sum_probs=104.0
Q ss_pred hHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCC-ccchhhcCCCCCCEEeCcCCcccccCchhhcCCC
Q 015481 232 SLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVG-SLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLP 310 (406)
Q Consensus 232 ~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 310 (406)
.+..+. +|++|++++|++.+..+..+..+++|++|++++|++++ .+|..+..+++|++|+|++|++++..|..+..++
T Consensus 419 ~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 497 (606)
T 3vq2_A 419 AFLSLE-KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497 (606)
T ss_dssp TTTTCT-TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhhccc-cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc
Confidence 344444 66666666666666666677777778888888888776 3677788888888888888888877888888899
Q ss_pred CCCEEEeeCCcCCcCCC----cCCCCCeeeCCCCCCCCCCCCC---C-cccccccccCCCCCCCC
Q 015481 311 KLENFTYSYNFFCTEPL----ACLKLKVKDDRQNCIPNRPFQR---S-PMECKTFYSHPVDCGAS 367 (406)
Q Consensus 311 ~L~~L~Ls~N~l~~~~~----~~~~L~~L~l~~N~l~~~p~~~---~-~~~~~~~~~np~~C~~~ 367 (406)
+|++|++++|++++.+| .+.+|+.|++++|+|+.+|... + .++...+.+||+.|...
T Consensus 498 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 99999999999888755 4668999999999999887532 2 35667899999999653
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=3.6e-31 Score=273.31 Aligned_cols=265 Identities=17% Similarity=0.232 Sum_probs=198.3
Q ss_pred CCCCcEEEEECCCCCcccc-----------------Cccccc--CCCCCCEEEcCCCcCCccCCchhhCCcCCceEeccc
Q 015481 92 PDCLTVAGIDLNQANIAGT-----------------LPEKLG--LLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSN 152 (406)
Q Consensus 92 ~~~~~l~~L~L~~n~l~~~-----------------~p~~l~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 152 (406)
..+++++.|+|++|.+++. +|+.++ ++++|++|++++|.+.+.+|..|+++++|++|++++
T Consensus 203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282 (636)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence 3577899999999999986 899988 999999999999999999999999999999999999
Q ss_pred cc-ccc-cCchhhcCC------CCCcEEEeecCcCCCCCch--hhhccc-cCeeeccccccccCCCCCCCCC-CccEEEc
Q 015481 153 NQ-FSG-CFPSVVLCL------PSLKFLDIRFNQFEGEIPS--AVFDLK-LDALFLNNNKFTSSLPNNIGNS-PVSVLVL 220 (406)
Q Consensus 153 N~-l~~-~~p~~l~~l------~~L~~L~Ls~N~l~~~~p~--~~~~l~-L~~L~L~~n~l~~~~~~~~~~~-~L~~L~l 220 (406)
|+ +++ .+|..+..+ ++|++|++++|.++ .+|. .+..++ |++|++++|+++|.+| .+... +|++|++
T Consensus 283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L 360 (636)
T 4eco_A 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL 360 (636)
T ss_dssp CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred CCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence 98 888 788888776 89999999999998 8888 788887 9999999999988888 55443 3888888
Q ss_pred ccccCCcCCchhHHhcccc-cceeeeccCCCcccChhhhccCC--CCcEEEeecCCCCCccchhhc-------CCCCCCE
Q 015481 221 ANNNFDSCLPPSLTKMAGT-LNEIILANAKLKGCLLKDIGLLN--QVTVFDVSFNNLVGSLPESMG-------NMKSLEQ 290 (406)
Q Consensus 221 ~~n~l~~~~p~~l~~l~~~-L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~Ls~N~l~~~~p~~l~-------~l~~L~~ 290 (406)
++|.++ .+|..+..+. + |++|++++|+++ .+|..+..+. +|++|++++|.+++.+|..+. .+++|++
T Consensus 361 ~~N~l~-~lp~~l~~l~-~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~ 437 (636)
T 4eco_A 361 AYNQIT-EIPANFCGFT-EQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437 (636)
T ss_dssp CSSEEE-ECCTTSEEEC-TTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEE
T ss_pred CCCccc-cccHhhhhhc-ccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCE
Confidence 888887 5777777777 6 888888888877 4666665543 677777777777777776666 6667777
Q ss_pred EeCcCCcccccCchh-hcCCCCCCEEEeeCCcCCcCCCcCC-----------CCCeeeCCCCCCCCCCC-----CCCccc
Q 015481 291 LNVAHNNLSGAIPNS-ICCLPKLENFTYSYNFFCTEPLACL-----------KLKVKDDRQNCIPNRPF-----QRSPME 353 (406)
Q Consensus 291 L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~~~~~-----------~L~~L~l~~N~l~~~p~-----~~~~~~ 353 (406)
|+|++|+++ .+|.. +..+++|++|+|++|.++.++.... +|+.|++++|.|+.+|. ..+.++
T Consensus 438 L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~ 516 (636)
T 4eco_A 438 INLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLV 516 (636)
T ss_dssp EECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCC
T ss_pred EECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcC
Confidence 777777776 44443 3456677777777777665443211 56666666666666652 223344
Q ss_pred ccccccCCC
Q 015481 354 CKTFYSHPV 362 (406)
Q Consensus 354 ~~~~~~np~ 362 (406)
...+.+|.+
T Consensus 517 ~L~Ls~N~l 525 (636)
T 4eco_A 517 GIDLSYNSF 525 (636)
T ss_dssp EEECCSSCC
T ss_pred EEECCCCCC
Confidence 444455544
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=4.5e-30 Score=260.48 Aligned_cols=175 Identities=21% Similarity=0.260 Sum_probs=133.0
Q ss_pred CCCcceeecCCCC----CC--CCCCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEec
Q 015481 77 VCNYTGVYCAPAP----DD--PDCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDV 150 (406)
Q Consensus 77 ~c~w~gv~c~~~~----~~--~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 150 (406)
.|.|.|+ |+... .. ...+++++|++++|++++..|..|.++++|++|++++|++++..|..|+++++|++|++
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 3777777 65321 00 12358999999999999888888999999999999999999877888999999999999
Q ss_pred ccccccccCchhhcCCCCCcEEEeecCcCCC-CCchhhhccc-cCeeeccccccccCCC-CCCCCCC-ccEEEcccccCC
Q 015481 151 SNNQFSGCFPSVVLCLPSLKFLDIRFNQFEG-EIPSAVFDLK-LDALFLNNNKFTSSLP-NNIGNSP-VSVLVLANNNFD 226 (406)
Q Consensus 151 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~-L~~L~L~~n~l~~~~~-~~~~~~~-L~~L~l~~n~l~ 226 (406)
++|++++..+..|..+++|++|++++|.+++ ..|..+..++ |++|++++|.+.+.++ ..+...+ |++|++++|.++
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 9999998777778999999999999999885 3566677776 8888888888544554 4455544 888888888887
Q ss_pred cCCchhHHhcc-----------------------cccceeeeccCCCcc
Q 015481 227 SCLPPSLTKMA-----------------------GTLNEIILANAKLKG 252 (406)
Q Consensus 227 ~~~p~~l~~l~-----------------------~~L~~L~l~~n~l~~ 252 (406)
+..|..+..+. ++|++|++++|++++
T Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccc
Confidence 76665544332 267777777777665
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=5.6e-30 Score=262.59 Aligned_cols=268 Identities=20% Similarity=0.176 Sum_probs=222.6
Q ss_pred CCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEE
Q 015481 94 CLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLD 173 (406)
Q Consensus 94 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 173 (406)
+++|+.|+|++|.+.+..+..|+.+++|++|+|++|.+++..|..|+++++|++|+|++|.+++..+..|..+++|++|+
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence 56899999999999988888899999999999999999988888889999999999999999966666678999999999
Q ss_pred eecCcCCCCCchhhhccc-cCeeeccccccccCCCCCCCC--------------------------------------CC
Q 015481 174 IRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGN--------------------------------------SP 214 (406)
Q Consensus 174 Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~--------------------------------------~~ 214 (406)
|++|.+++..|..+..++ |++|++++|.+++.....+.. ..
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~ 233 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 233 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSC
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCC
Confidence 999999977777788877 999999999887542221111 23
Q ss_pred ccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCc
Q 015481 215 VSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVA 294 (406)
Q Consensus 215 L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 294 (406)
|+.|++++|.+++ +..+..+. +|++|++++|.+++..|..+..+++|+.|+|++|.++ .+|..+..+++|++|+|+
T Consensus 234 L~~L~L~~n~l~~--~~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~Ls 309 (597)
T 3oja_B 234 LTILKLQHNNLTD--TAWLLNYP-GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLS 309 (597)
T ss_dssp CCEEECCSSCCCC--CGGGGGCT-TCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC-EEECSSSCCTTCCEEECC
T ss_pred CCEEECCCCCCCC--ChhhccCC-CCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC-CCCcccccCCCCcEEECC
Confidence 6777777787776 35677787 9999999999999988999999999999999999999 578778889999999999
Q ss_pred CCcccccCchhhcCCCCCCEEEeeCCcCCcCCC-cCCCCCeeeCCCCCCCCCC--CCCCcccccccccCCCCCCC
Q 015481 295 HNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL-ACLKLKVKDDRQNCIPNRP--FQRSPMECKTFYSHPVDCGA 366 (406)
Q Consensus 295 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~L~~L~l~~N~l~~~p--~~~~~~~~~~~~~np~~C~~ 366 (406)
+|.++ .+|..+..+++|+.|+|++|.|++.+. .+++|+.|++++|.++... .....+.-..+.+++..|+.
T Consensus 310 ~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 310 HNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp SSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCCCCCCT
T ss_pred CCCCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCCChhHHHHHHHHhhhccccccccCCc
Confidence 99999 788889999999999999999998765 6789999999999887532 11112222345667777765
No 25
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.8e-29 Score=239.82 Aligned_cols=260 Identities=20% Similarity=0.267 Sum_probs=222.4
Q ss_pred cEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEee
Q 015481 96 TVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIR 175 (406)
Q Consensus 96 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 175 (406)
+++.++++++.++ .+|..+. +.|++|++++|++++..+..|+++++|++|++++|.+++..|..|..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 6788999999987 5676554 689999999999997777789999999999999999998889999999999999999
Q ss_pred cCcCCCCCchhhhccccCeeeccccccccCCCCCCCCC-CccEEEcccccCCc--CCchhHHhcccccceeeeccCCCcc
Q 015481 176 FNQFEGEIPSAVFDLKLDALFLNNNKFTSSLPNNIGNS-PVSVLVLANNNFDS--CLPPSLTKMAGTLNEIILANAKLKG 252 (406)
Q Consensus 176 ~N~l~~~~p~~~~~l~L~~L~L~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~--~~p~~l~~l~~~L~~L~l~~n~l~~ 252 (406)
+|.++ .+|..+. ..|++|++++|.+++..+..+... .|++|++++|.+.. ..+..+..+. +|++|++++|+++.
T Consensus 109 ~n~l~-~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~-~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK-KLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT-TCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCC-CcCEEECCCCcccc
Confidence 99998 7777665 349999999999997666656554 49999999999964 5677788888 99999999999987
Q ss_pred cChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC---cC
Q 015481 253 CLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL---AC 329 (406)
Q Consensus 253 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~---~~ 329 (406)
+|..+. ++|++|++++|++++..+..+..+++|++|+|++|.+++..+..+..+++|++|++++|.++.++. .+
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l 262 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH 262 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTC
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccC
Confidence 555443 899999999999998888999999999999999999998777789999999999999999997765 56
Q ss_pred CCCCeeeCCCCCCCCCCCC----------CCcccccccccCCCCC
Q 015481 330 LKLKVKDDRQNCIPNRPFQ----------RSPMECKTFYSHPVDC 364 (406)
Q Consensus 330 ~~L~~L~l~~N~l~~~p~~----------~~~~~~~~~~~np~~C 364 (406)
++|+.|++++|+|++++.. ...+....+.+||+.+
T Consensus 263 ~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 7899999999999998631 1233445678888765
No 26
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=5.7e-30 Score=245.68 Aligned_cols=268 Identities=18% Similarity=0.178 Sum_probs=221.1
Q ss_pred CCCCcceeecCCCC----CC--CCCCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEe
Q 015481 76 NVCNYTGVYCAPAP----DD--PDCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELD 149 (406)
Q Consensus 76 ~~c~w~gv~c~~~~----~~--~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 149 (406)
..|.|.|+ |+... .. ...+++++|++++|++++..+..|.++++|++|++++|.+++..+..|+++++|++|+
T Consensus 28 ~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 28 LSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp CEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 45778776 54221 11 1235899999999999987777899999999999999999988888899999999999
Q ss_pred cccccccccCchhhcCCCCCcEEEeecCcCCCCCch--hhhccc-cCeeeccccc-cccCCCCCCCCCC-ccEEEccccc
Q 015481 150 VSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPS--AVFDLK-LDALFLNNNK-FTSSLPNNIGNSP-VSVLVLANNN 224 (406)
Q Consensus 150 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~-L~~L~L~~n~-l~~~~~~~~~~~~-L~~L~l~~n~ 224 (406)
+++|++++..+..|..+++|++|++++|+++ .+|. .+..++ |++|++++|. +.+..+..+...+ |++|++++|.
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 9999999766666999999999999999999 5665 666777 9999999994 6655566676654 9999999999
Q ss_pred CCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhh---cCCCCCCEEeCcCCcccc-
Q 015481 225 FDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESM---GNMKSLEQLNVAHNNLSG- 300 (406)
Q Consensus 225 l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~- 300 (406)
+.+..|..+..+. +|++|++++|++.......+..+++|++|++++|.+++..+..+ .....++.++|+++.+++
T Consensus 186 l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~ 264 (353)
T 2z80_A 186 LQSYEPKSLKSIQ-NVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264 (353)
T ss_dssp CCEECTTTTTTCS-EEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred cCccCHHHHhccc-cCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence 9998888899888 99999999999977444456679999999999999997555443 346778899999998875
Q ss_pred ---cCchhhcCCCCCCEEEeeCCcCCcCCC----cCCCCCeeeCCCCCCCCCC
Q 015481 301 ---AIPNSICCLPKLENFTYSYNFFCTEPL----ACLKLKVKDDRQNCIPNRP 346 (406)
Q Consensus 301 ---~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~L~~L~l~~N~l~~~p 346 (406)
.+|..+..+++|++|++++|+++.++. .+++|+.|++++|.++..+
T Consensus 265 ~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 265 SLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred chhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 478889999999999999999998775 3568999999999888763
No 27
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=2.6e-29 Score=257.98 Aligned_cols=250 Identities=16% Similarity=0.174 Sum_probs=186.5
Q ss_pred CCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEE
Q 015481 94 CLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLD 173 (406)
Q Consensus 94 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 173 (406)
..+++.|+|++|.+++..|..|.++++|++|++++|.+++..|..|+++++|++|++++|++++..|..|.++++|++|+
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 34789999999999988888999999999999999999988888999999999999999999988888999999999999
Q ss_pred eecCcCCCCCchhhhccc-cCeeeccccccccC-CCCCCCCCCccEEEcccccCCcCCchhHHhcccccc--eeeeccCC
Q 015481 174 IRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSS-LPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLN--EIILANAK 249 (406)
Q Consensus 174 Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~-~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~--~L~l~~n~ 249 (406)
+++|.+++..+..+..++ |++|++++|++.+. .|..+...+|++|++++|.+.+..+..+..+. +|+ +|++++|+
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ-QATNLSLNLNGND 190 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTT-TCCSEEEECTTCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhc-ccceeEEecCCCc
Confidence 999999865566777777 99999999999863 35555555688888888888876666676666 666 56666665
Q ss_pred CcccC---------------------------------------------------------------------------
Q 015481 250 LKGCL--------------------------------------------------------------------------- 254 (406)
Q Consensus 250 l~~~~--------------------------------------------------------------------------- 254 (406)
+++..
T Consensus 191 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~ 270 (606)
T 3t6q_A 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270 (606)
T ss_dssp CCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC
T ss_pred cCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccC
Confidence 55433
Q ss_pred hhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC-----cC
Q 015481 255 LKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL-----AC 329 (406)
Q Consensus 255 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-----~~ 329 (406)
+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..+ .+
T Consensus 271 ~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 271 SNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349 (606)
T ss_dssp TTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred HHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence 233555666677777777666 666666666677777777776665555566666666666666666553332 34
Q ss_pred CCCCeeeCCCCCCCCC
Q 015481 330 LKLKVKDDRQNCIPNR 345 (406)
Q Consensus 330 ~~L~~L~l~~N~l~~~ 345 (406)
.+|+.|++++|.+++.
T Consensus 350 ~~L~~L~l~~n~l~~~ 365 (606)
T 3t6q_A 350 ENLRELDLSHDDIETS 365 (606)
T ss_dssp TTCCEEECCSSCCCEE
T ss_pred CcCCEEECCCCccccc
Confidence 5566666666666544
No 28
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=5.9e-30 Score=258.06 Aligned_cols=264 Identities=19% Similarity=0.221 Sum_probs=173.7
Q ss_pred CCCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccc-cCchhhcCCCCCcE
Q 015481 93 DCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSG-CFPSVVLCLPSLKF 171 (406)
Q Consensus 93 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~ 171 (406)
.+++++.|+|++|++++..|..|+++++|++|++++|+++ .+|.. .+++|++|++++|++++ .+|..|+.+++|++
T Consensus 43 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~ 119 (520)
T 2z7x_B 43 SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKF 119 (520)
T ss_dssp TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCE
T ss_pred ccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceE
Confidence 4567777777777777766777777777777777777777 45554 67777777777777775 35677777777777
Q ss_pred EEeecCcCCCCCchhhhccc-c--Ceeecccccc--ccCCCCCCCC----------------------------------
Q 015481 172 LDIRFNQFEGEIPSAVFDLK-L--DALFLNNNKF--TSSLPNNIGN---------------------------------- 212 (406)
Q Consensus 172 L~Ls~N~l~~~~p~~~~~l~-L--~~L~L~~n~l--~~~~~~~~~~---------------------------------- 212 (406)
|++++|.+++. .+..+. | ++|++++|.+ .+..|..+..
T Consensus 120 L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~ 196 (520)
T 2z7x_B 120 LGLSTTHLEKS---SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196 (520)
T ss_dssp EEEEESSCCGG---GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECC
T ss_pred EEecCcccchh---hccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecc
Confidence 77777776531 122222 3 5555555444 3333322221
Q ss_pred --------------------------------------------------CCccEEEcccccCCcCCchhH---------
Q 015481 213 --------------------------------------------------SPVSVLVLANNNFDSCLPPSL--------- 233 (406)
Q Consensus 213 --------------------------------------------------~~L~~L~l~~n~l~~~~p~~l--------- 233 (406)
..+++|++++|.+.+.+|..+
T Consensus 197 l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~ 276 (520)
T 2z7x_B 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK 276 (520)
T ss_dssp EEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCC
T ss_pred ccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCc
Confidence 034445555555444343322
Q ss_pred --------------------------------------------HhcccccceeeeccCCCcccChhhhccCCCCcEEEe
Q 015481 234 --------------------------------------------TKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDV 269 (406)
Q Consensus 234 --------------------------------------------~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 269 (406)
..+. +|++|++++|++++.+|..+..+++|++|+|
T Consensus 277 ~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 355 (520)
T 2z7x_B 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS-PFLHLDFSNNLLTDTVFENCGHLTELETLIL 355 (520)
T ss_dssp EEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC-CCCEEECCSSCCCTTTTTTCCCCSSCCEEEC
T ss_pred eeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCC-cccEEEeECCccChhhhhhhccCCCCCEEEc
Confidence 2333 6777888888887777777788888888888
Q ss_pred ecCCCCC--ccchhhcCCCCCCEEeCcCCcccccCchh-hcCCCCCCEEEeeCCcCCcCCCc-C-CCCCeeeCCCCCCCC
Q 015481 270 SFNNLVG--SLPESMGNMKSLEQLNVAHNNLSGAIPNS-ICCLPKLENFTYSYNFFCTEPLA-C-LKLKVKDDRQNCIPN 344 (406)
Q Consensus 270 s~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~~~-~-~~L~~L~l~~N~l~~ 344 (406)
++|++++ .+|..+..+++|++|++++|.+++.+|.. +..+++|++|++++|.+++..+. + .+|+.|++++|+|+.
T Consensus 356 ~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ 435 (520)
T 2z7x_B 356 QMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS 435 (520)
T ss_dssp CSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCC
T ss_pred cCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccc
Confidence 8888875 45567778888888888888887656654 67778888888888888766553 2 578888888888888
Q ss_pred CCC---CCCcccccccccCCCC
Q 015481 345 RPF---QRSPMECKTFYSHPVD 363 (406)
Q Consensus 345 ~p~---~~~~~~~~~~~~np~~ 363 (406)
+|. ..+.++...+.+|.+.
T Consensus 436 ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 436 IPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp CCGGGGGCTTCCEEECCSSCCC
T ss_pred cchhhhcCCCCCEEECCCCcCC
Confidence 774 2334444556666554
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=2e-29 Score=256.74 Aligned_cols=125 Identities=18% Similarity=0.186 Sum_probs=96.4
Q ss_pred ccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCC--ccchhhcCCCCCCEEeCcCCcccccCchh-hcCCCCCCEE
Q 015481 239 TLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVG--SLPESMGNMKSLEQLNVAHNNLSGAIPNS-ICCLPKLENF 315 (406)
Q Consensus 239 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L 315 (406)
+|++|++++|++++.+|..+..+++|++|+|++|++++ .+|..+..+++|++|++++|++++.+|.. +..+++|++|
T Consensus 354 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L 433 (562)
T 3a79_B 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433 (562)
T ss_dssp CCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEE
T ss_pred CceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEE
Confidence 78888888888888778888888888888888888885 33566788888888888888888656654 6778888888
Q ss_pred EeeCCcCCcCCCc-C-CCCCeeeCCCCCCCCCCCCC---CcccccccccCCCC
Q 015481 316 TYSYNFFCTEPLA-C-LKLKVKDDRQNCIPNRPFQR---SPMECKTFYSHPVD 363 (406)
Q Consensus 316 ~Ls~N~l~~~~~~-~-~~L~~L~l~~N~l~~~p~~~---~~~~~~~~~~np~~ 363 (406)
++++|.+++..+. + .+|+.|++++|+|+.+|... +.++...+.+|.+.
T Consensus 434 ~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 434 NLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp ECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC
T ss_pred ECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC
Confidence 8888888776653 3 58999999999999887432 34445566666654
No 30
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=7.1e-30 Score=240.02 Aligned_cols=243 Identities=21% Similarity=0.218 Sum_probs=131.6
Q ss_pred CCCcceeecCCCC--CC--CCCCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCc--cCCchhhCCcCCceEec
Q 015481 77 VCNYTGVYCAPAP--DD--PDCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCG--TIPDSFRNMQLLFELDV 150 (406)
Q Consensus 77 ~c~w~gv~c~~~~--~~--~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L 150 (406)
.|.|.++.|.... .. ....++++|++++|+++...+..|.++++|++|++++|.++. ..+..+..+++|++|++
T Consensus 6 ~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred eeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 3789888887421 00 122456666666666663333345666666666666666652 22445555666666666
Q ss_pred ccccccccCchhhcCCCCCcEEEeecCcCCCCCc-hhhhccc-cCeeeccccccccCCCCCCCCCCccEEEcccccCCcC
Q 015481 151 SNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIP-SAVFDLK-LDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSC 228 (406)
Q Consensus 151 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~ 228 (406)
++|.++ .+|..+..+++|++|++++|.+++..+ ..+..++ |++|++++|.+.+..+..
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------------------- 145 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI------------------- 145 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT-------------------
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh-------------------
Confidence 666665 344456666666666666666653222 2344444 555555555555444443
Q ss_pred CchhHHhcccccceeeeccCCCcc-cChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhc
Q 015481 229 LPPSLTKMAGTLNEIILANAKLKG-CLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSIC 307 (406)
Q Consensus 229 ~p~~l~~l~~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 307 (406)
+..+. +|++|++++|.+++ .+|..+..+++|++|+|++|++++..|..+..+++|++|+|++|++++..+..+.
T Consensus 146 ----~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 220 (306)
T 2z66_A 146 ----FNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220 (306)
T ss_dssp ----TTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGT
T ss_pred ----cccCc-CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhcc
Confidence 44444 55555555555544 3444555555555555555555544455555555555555555555544444455
Q ss_pred CCCCCCEEEeeCCcCCcCCC----cC-CCCCeeeCCCCCCCC
Q 015481 308 CLPKLENFTYSYNFFCTEPL----AC-LKLKVKDDRQNCIPN 344 (406)
Q Consensus 308 ~l~~L~~L~Ls~N~l~~~~~----~~-~~L~~L~l~~N~l~~ 344 (406)
.+++|+.|++++|.+++.++ .+ .+|+.|++++|.++.
T Consensus 221 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 55555555555555555443 12 245555555555543
No 31
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=3.4e-29 Score=237.91 Aligned_cols=224 Identities=16% Similarity=0.173 Sum_probs=205.1
Q ss_pred CCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEeecCcCCCCCchhhhccc-cCee
Q 015481 117 LLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLK-LDAL 195 (406)
Q Consensus 117 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-L~~L 195 (406)
...+++.|++++|.++ .+|..+.++++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+..++ |++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 4588999999999999 78988999999999999999999 88999999999999999999999 8999999988 9999
Q ss_pred eccccccccCCCCCCC----------CCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCc
Q 015481 196 FLNNNKFTSSLPNNIG----------NSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVT 265 (406)
Q Consensus 196 ~L~~n~l~~~~~~~~~----------~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 265 (406)
++++|++.+.+|..+. ...|++|++++|.++ .+|..+..+. +|++|++++|++++ +|..+..+++|+
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~-~L~~L~L~~N~l~~-l~~~l~~l~~L~ 232 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ-NLKSLKIRNSPLSA-LGPAIHHLPKLE 232 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCT-TCCEEEEESSCCCC-CCGGGGGCTTCC
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCC-CCCEEEccCCCCCc-CchhhccCCCCC
Confidence 9999999999998775 455999999999998 6899999998 99999999999997 666799999999
Q ss_pred EEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC----cCCCCCeeeCCCCC
Q 015481 266 VFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL----ACLKLKVKDDRQNC 341 (406)
Q Consensus 266 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~L~~L~l~~N~ 341 (406)
+|+|++|++.+.+|..++.+++|++|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+| .+++|+.+++..|.
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999988887 57789999998887
Q ss_pred CCCCC
Q 015481 342 IPNRP 346 (406)
Q Consensus 342 l~~~p 346 (406)
+..++
T Consensus 313 ~~~l~ 317 (328)
T 4fcg_A 313 QAQLD 317 (328)
T ss_dssp SCC--
T ss_pred HHHHh
Confidence 66554
No 32
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=4.6e-29 Score=259.58 Aligned_cols=273 Identities=18% Similarity=0.245 Sum_probs=220.0
Q ss_pred CCCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCcc-C-CchhhCC--cCCceEecccccccccCchhhcCCCC
Q 015481 93 DCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGT-I-PDSFRNM--QLLFELDVSNNQFSGCFPSVVLCLPS 168 (406)
Q Consensus 93 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~-p~~~~~l--~~L~~L~Ls~N~l~~~~p~~l~~l~~ 168 (406)
.+++++.|++++|.+.+..+..|.++++|++|++++|.+... + ...|..+ ++|++|++++|++++..|..|..+++
T Consensus 327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence 456677777777777766666677777777777777764422 1 1223322 46788888888888888888999999
Q ss_pred CcEEEeecCcCCCCCc-hhhhccc-cCeeeccccccccCCCCCCCCCC-ccEEEcccccCC--cCCchhHHhccccccee
Q 015481 169 LKFLDIRFNQFEGEIP-SAVFDLK-LDALFLNNNKFTSSLPNNIGNSP-VSVLVLANNNFD--SCLPPSLTKMAGTLNEI 243 (406)
Q Consensus 169 L~~L~Ls~N~l~~~~p-~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~--~~~p~~l~~l~~~L~~L 243 (406)
|++|++++|.+.+.+| ..+..+. |++|++++|++.+..+..+...+ |+.|++++|.+. +.+|..+..+. +|++|
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~-~L~~L 485 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR-NLTIL 485 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT-TCCEE
T ss_pred CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCC-CCCEE
Confidence 9999999999987676 5666676 99999999999877777776544 999999999886 55788888888 99999
Q ss_pred eeccCCCcccChhhhccCCCCcEEEeecCCCCCccc--------hhhcCCCCCCEEeCcCCcccccCc-hhhcCCCCCCE
Q 015481 244 ILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLP--------ESMGNMKSLEQLNVAHNNLSGAIP-NSICCLPKLEN 314 (406)
Q Consensus 244 ~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p--------~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~ 314 (406)
++++|++++..+..+..+++|++|+|++|++++..+ ..+..+++|++|+|++|+++ .+| ..|.++++|+.
T Consensus 486 ~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~ 564 (680)
T 1ziw_A 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKI 564 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred ECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcce
Confidence 999999999778889999999999999999985321 23788999999999999999 555 46899999999
Q ss_pred EEeeCCcCCcCCC----cCCCCCeeeCCCCCCCCCCC-----CCCcccccccccCCCCCCCC
Q 015481 315 FTYSYNFFCTEPL----ACLKLKVKDDRQNCIPNRPF-----QRSPMECKTFYSHPVDCGAS 367 (406)
Q Consensus 315 L~Ls~N~l~~~~~----~~~~L~~L~l~~N~l~~~p~-----~~~~~~~~~~~~np~~C~~~ 367 (406)
|++++|+++++++ .+.+|+.|++++|+|++++. ..+.+....+.+|||.|+..
T Consensus 565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred eECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 9999999998887 35789999999999999873 34567778899999999754
No 33
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=2.8e-29 Score=238.84 Aligned_cols=259 Identities=20% Similarity=0.298 Sum_probs=220.6
Q ss_pred cEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEee
Q 015481 96 TVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIR 175 (406)
Q Consensus 96 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 175 (406)
+++.++++++.+. .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|++++..|..|..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 6788999999987 6776664 799999999999997778889999999999999999998889999999999999999
Q ss_pred cCcCCCCCchhhhccccCeeeccccccccCCCCCCCCC-CccEEEcccccCCc--CCchhHHhcccccceeeeccCCCcc
Q 015481 176 FNQFEGEIPSAVFDLKLDALFLNNNKFTSSLPNNIGNS-PVSVLVLANNNFDS--CLPPSLTKMAGTLNEIILANAKLKG 252 (406)
Q Consensus 176 ~N~l~~~~p~~~~~l~L~~L~L~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~--~~p~~l~~l~~~L~~L~l~~n~l~~ 252 (406)
+|.++ .+|..+. ..|++|++++|++++..+..+... +|++|++++|.++. ..+..+..+ +|++|++++|++++
T Consensus 111 ~n~l~-~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC--CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC--ccCEEECcCCCCCc
Confidence 99999 7887666 349999999999986666556654 49999999999963 455555554 89999999999988
Q ss_pred cChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC---cC
Q 015481 253 CLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL---AC 329 (406)
Q Consensus 253 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~---~~ 329 (406)
+|..+. ++|++|+|++|.+++..+..+..+++|++|+|++|++++..+..+..+++|++|++++|+++.++. .+
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l 263 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDL 263 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGC
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcC
Confidence 555443 799999999999998777889999999999999999998777789999999999999999997765 56
Q ss_pred CCCCeeeCCCCCCCCCCCC----------CCcccccccccCCCCC
Q 015481 330 LKLKVKDDRQNCIPNRPFQ----------RSPMECKTFYSHPVDC 364 (406)
Q Consensus 330 ~~L~~L~l~~N~l~~~p~~----------~~~~~~~~~~~np~~C 364 (406)
++|+.|++++|.|+.++.. ...+....+.+||+.+
T Consensus 264 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred ccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccc
Confidence 7899999999999988632 2234456778888764
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=7e-29 Score=264.17 Aligned_cols=255 Identities=20% Similarity=0.215 Sum_probs=176.3
Q ss_pred CCCCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCch--hhCCcCCceEecccccccccCc-hhhcCCCC
Q 015481 92 PDCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDS--FRNMQLLFELDVSNNQFSGCFP-SVVLCLPS 168 (406)
Q Consensus 92 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~ 168 (406)
..+++|+.|+|++|.+.+..|..|+++++|++|++++|.+++.+|.. |+++++|++|+|++|.+++..+ ..|.++++
T Consensus 70 ~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~ 149 (844)
T 3j0a_A 70 RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS 149 (844)
T ss_dssp SSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSS
T ss_pred cCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCC
Confidence 35667888888888888777888888888888888888887666654 7788888888888888876544 46778888
Q ss_pred CcEEEeecCcCCCCCchhhhcc--c-cCeeeccccccccCCCCCCCC-------CCccEEEcccccCCcCCchhHHhc--
Q 015481 169 LKFLDIRFNQFEGEIPSAVFDL--K-LDALFLNNNKFTSSLPNNIGN-------SPVSVLVLANNNFDSCLPPSLTKM-- 236 (406)
Q Consensus 169 L~~L~Ls~N~l~~~~p~~~~~l--~-L~~L~L~~n~l~~~~~~~~~~-------~~L~~L~l~~n~l~~~~p~~l~~l-- 236 (406)
|++|+|++|.+++..+..+..+ . |+.|+++.|.+.+..+..+.. ..|+.|++++|.+++..+..+...
T Consensus 150 L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~ 229 (844)
T 3j0a_A 150 LKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAIS 229 (844)
T ss_dssp CCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSC
T ss_pred CCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcC
Confidence 8888888888877666666654 3 777777777776655543322 236777777776665554443321
Q ss_pred -----------------------------------ccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchh
Q 015481 237 -----------------------------------AGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPES 281 (406)
Q Consensus 237 -----------------------------------~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~ 281 (406)
..+|++|++++|.+.+..+..+..+++|+.|+|++|++++..|..
T Consensus 230 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 309 (844)
T 3j0a_A 230 KSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA 309 (844)
T ss_dssp SCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTT
T ss_pred cccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHH
Confidence 025677777777777666666677777777777777777666666
Q ss_pred hcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC----cCCCCCeeeCCCCCCCCCC
Q 015481 282 MGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL----ACLKLKVKDDRQNCIPNRP 346 (406)
Q Consensus 282 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~L~~L~l~~N~l~~~p 346 (406)
|..+++|++|+|++|.+++..|..+..+++|+.|++++|.+.+.++ .+++|+.|++++|.+++++
T Consensus 310 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~ 378 (844)
T 3j0a_A 310 FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH 378 (844)
T ss_dssp TTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS
T ss_pred hcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc
Confidence 7777777777777777765666667777777777777777766554 2456666777666666654
No 35
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=2.7e-29 Score=248.97 Aligned_cols=228 Identities=19% Similarity=0.160 Sum_probs=174.2
Q ss_pred CCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEE
Q 015481 94 CLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLD 173 (406)
Q Consensus 94 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 173 (406)
..+++.|+|++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|+
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 35788999999999888888899999999999999999987778889999999999999999877777788899999999
Q ss_pred eecCcCCCCCchhhhccc-cCeeeccccccccCCCC-CCCCC-CccEEEcccccCCcCCchhHHhcccccceeeeccCCC
Q 015481 174 IRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPN-NIGNS-PVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKL 250 (406)
Q Consensus 174 Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~-~~~~~-~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l 250 (406)
|++|.++...+..+..++ |++|++++|...+.++. .+... +|++|++++|.+++ +| .+..+. +|++|++++|++
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~-~L~~L~Ls~N~l 230 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLV-GLEELEMSGNHF 230 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCT-TCCEEECTTSCC
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccc-cccEEECcCCcC
Confidence 999998844444566666 88888888544444443 34443 37788888877765 33 355555 777777777777
Q ss_pred cccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCc
Q 015481 251 KGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCT 324 (406)
Q Consensus 251 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 324 (406)
++..+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+|++..+..+..+++|+.|+|++|.+..
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 77767777777777777777777776667777777777777777777775555566777777777777776643
No 36
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=1e-28 Score=250.53 Aligned_cols=268 Identities=18% Similarity=0.184 Sum_probs=153.9
Q ss_pred CCCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccc-cCchhhcCCCCCcE
Q 015481 93 DCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSG-CFPSVVLCLPSLKF 171 (406)
Q Consensus 93 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~ 171 (406)
.++++++|++++|.+++..|..|.++++|++|++++|.+++..+..|+++++|++|++++|.+++ ..|..+..+++|++
T Consensus 48 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 127 (549)
T 2z81_A 48 ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127 (549)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred cCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccE
Confidence 45566777777777666666666666777777777776665555556666666666666666664 23445566666666
Q ss_pred EEeecCcCCCCCc-hhhhccc-cCeeeccccccccCCCCCCCC-------------------------CCccEEEccccc
Q 015481 172 LDIRFNQFEGEIP-SAVFDLK-LDALFLNNNKFTSSLPNNIGN-------------------------SPVSVLVLANNN 224 (406)
Q Consensus 172 L~Ls~N~l~~~~p-~~~~~l~-L~~L~L~~n~l~~~~~~~~~~-------------------------~~L~~L~l~~n~ 224 (406)
|++++|.+.+.+| ..+..++ |++|++++|.+++..|..+.. .+|++|++++|+
T Consensus 128 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCB
T ss_pred EECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCc
Confidence 6666665333333 2344444 555555555544433333221 123333333333
Q ss_pred CCc-----------------------------------------------------------------------------
Q 015481 225 FDS----------------------------------------------------------------------------- 227 (406)
Q Consensus 225 l~~----------------------------------------------------------------------------- 227 (406)
+++
T Consensus 208 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 287 (549)
T 2z81_A 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 287 (549)
T ss_dssp CTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEE
T ss_pred cccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccc
Confidence 332
Q ss_pred ------------------------------------CCchhHH-hcccccceeeeccCCCcccChh---hhccCCCCcEE
Q 015481 228 ------------------------------------CLPPSLT-KMAGTLNEIILANAKLKGCLLK---DIGLLNQVTVF 267 (406)
Q Consensus 228 ------------------------------------~~p~~l~-~l~~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L 267 (406)
.+|..+. .+. +|++|++++|++++.++. .++.+++|++|
T Consensus 288 l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L 366 (549)
T 2z81_A 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLK-SLEFLDLSENLMVEEYLKNSACKGAWPSLQTL 366 (549)
T ss_dssp EESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCT-TCCEEECCSSCCCHHHHHHHTCTTSSTTCCEE
T ss_pred ccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCc-cccEEEccCCccccccccchhhhhccccCcEE
Confidence 2444443 344 777777777777765533 25667777777
Q ss_pred EeecCCCCCccc--hhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCCcC-CCCCeeeCCCCCCCC
Q 015481 268 DVSFNNLVGSLP--ESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPLAC-LKLKVKDDRQNCIPN 344 (406)
Q Consensus 268 ~Ls~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~-~~L~~L~l~~N~l~~ 344 (406)
+|++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++.+... .+|+.|++++|+|++
T Consensus 367 ~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~ 445 (549)
T 2z81_A 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDS 445 (549)
T ss_dssp ECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSC
T ss_pred EccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhh
Confidence 777777764322 34677777777777777777 56766666777777777777666544322 245555555555555
Q ss_pred CCCCCCcccccccccCCC
Q 015481 345 RPFQRSPMECKTFYSHPV 362 (406)
Q Consensus 345 ~p~~~~~~~~~~~~~np~ 362 (406)
++...+.++...+.+|.+
T Consensus 446 ~~~~l~~L~~L~Ls~N~l 463 (549)
T 2z81_A 446 FSLFLPRLQELYISRNKL 463 (549)
T ss_dssp CCCCCTTCCEEECCSSCC
T ss_pred hcccCChhcEEECCCCcc
Confidence 543334444444444443
No 37
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=2.5e-28 Score=257.80 Aligned_cols=265 Identities=19% Similarity=0.222 Sum_probs=166.6
Q ss_pred CCCcEEEEECCCCC-ccc-cCcccccCCC-------CCCEEEcCCCcCCccCCc--hhhCCcCCceEecccccccc----
Q 015481 93 DCLTVAGIDLNQAN-IAG-TLPEKLGLLQ-------DLALFHINSNRFCGTIPD--SFRNMQLLFELDVSNNQFSG---- 157 (406)
Q Consensus 93 ~~~~l~~L~L~~n~-l~~-~~p~~l~~l~-------~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~---- 157 (406)
.+++|+.|+|++|+ +++ .+|..++++. +|++|++++|.++ .+|. .|+++++|++|+|++|+++.
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~ 591 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLEAF 591 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCCCC
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccchhh
Confidence 34455566666655 555 4454433333 5555555555555 4554 45555555555555555540
Q ss_pred -----------------cCchhhcCCCC-CcEEEeecCcCCCCCchhhhccc---cCeeeccccccccCCCCCC------
Q 015481 158 -----------------CFPSVVLCLPS-LKFLDIRFNQFEGEIPSAVFDLK---LDALFLNNNKFTSSLPNNI------ 210 (406)
Q Consensus 158 -----------------~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~---L~~L~L~~n~l~~~~~~~~------ 210 (406)
.+|..+..+++ |++|+|++|.++ .+|..+.... |+.|++++|++.+.+|...
T Consensus 592 ~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~ 670 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY 670 (876)
T ss_dssp CTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTC
T ss_pred cCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccc
Confidence 34444444444 444444444444 4444333332 5555555555554433221
Q ss_pred CCCCccEEEcccccCCcCCchhHH-hcccccceeeeccCCCcccChhhhcc--------CCCCcEEEeecCCCCCccchh
Q 015481 211 GNSPVSVLVLANNNFDSCLPPSLT-KMAGTLNEIILANAKLKGCLLKDIGL--------LNQVTVFDVSFNNLVGSLPES 281 (406)
Q Consensus 211 ~~~~L~~L~l~~n~l~~~~p~~l~-~l~~~L~~L~l~~n~l~~~~~~~l~~--------l~~L~~L~Ls~N~l~~~~p~~ 281 (406)
...+|+.|++++|.+. .+|..+. .+. +|+.|++++|+++. +|..+.. +++|+.|+|++|+++ .+|..
T Consensus 671 ~~~~L~~L~Ls~N~L~-~lp~~~~~~l~-~L~~L~Ls~N~L~~-ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~ 746 (876)
T 4ecn_A 671 KGINASTVTLSYNEIQ-KFPTELFATGS-PISTIILSNNLMTS-IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDD 746 (876)
T ss_dssp CCCCEEEEECCSSCCC-SCCHHHHHTTC-CCSEEECCSCCCSC-CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGG
T ss_pred cCCCcCEEEccCCcCC-ccCHHHHccCC-CCCEEECCCCcCCc-cChHHhccccccccccCCccEEECCCCCCc-cchHH
Confidence 1124677777777777 3666665 445 88888888888884 5543332 238889999999888 78887
Q ss_pred hc--CCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeC------CcCCcCCC----cCCCCCeeeCCCCCCCCCCCCC
Q 015481 282 MG--NMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSY------NFFCTEPL----ACLKLKVKDDRQNCIPNRPFQR 349 (406)
Q Consensus 282 l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~------N~l~~~~~----~~~~L~~L~l~~N~l~~~p~~~ 349 (406)
+. .+++|+.|+|++|+|++ +|..+..+++|+.|+|++ |.+.+.+| .+++|+.|++++|.|+.+|...
T Consensus 747 l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l 825 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL 825 (876)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCC
T ss_pred hhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhh
Confidence 76 88899999999999985 788888889999998876 67777666 4678899999999998887533
Q ss_pred -CcccccccccCCCCC
Q 015481 350 -SPMECKTFYSHPVDC 364 (406)
Q Consensus 350 -~~~~~~~~~~np~~C 364 (406)
+.++...+.+|++..
T Consensus 826 ~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 826 TPQLYILDIADNPNIS 841 (876)
T ss_dssp CSSSCEEECCSCTTCE
T ss_pred cCCCCEEECCCCCCCc
Confidence 445556777777643
No 38
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=6e-29 Score=233.67 Aligned_cols=242 Identities=18% Similarity=0.236 Sum_probs=197.8
Q ss_pred EEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEeccccccccc--CchhhcCCCCCcEEEee
Q 015481 98 AGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGC--FPSVVLCLPSLKFLDIR 175 (406)
Q Consensus 98 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~Ls 175 (406)
+.++.++++++ .+|..+. ++|++|++++|.++...+..|.++++|++|++++|.++.. .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 47888888887 5665543 6899999999999854444578999999999999998733 36677789999999999
Q ss_pred cCcCCCCCchhhhccc-cCeeeccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccC
Q 015481 176 FNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCL 254 (406)
Q Consensus 176 ~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~ 254 (406)
+|.+. .+|..+..++ |++|++++|++++..+ ...+..+. +|++|++++|++.+..
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~----------------------~~~~~~l~-~L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSE----------------------FSVFLSLR-NLIYLDISHTHTRVAF 142 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTT----------------------TTTTTTCT-TCCEEECTTSCCEECS
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCccccccc----------------------chhhhhcc-CCCEEECCCCcCCccc
Confidence 99988 6676666666 7888877777763321 02344555 8999999999999888
Q ss_pred hhhhccCCCCcEEEeecCCCCC-ccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC----cC
Q 015481 255 LKDIGLLNQVTVFDVSFNNLVG-SLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL----AC 329 (406)
Q Consensus 255 ~~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~ 329 (406)
+..+..+++|++|+|++|.+++ .+|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++.++ .+
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 222 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTC
T ss_pred hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCc
Confidence 8889999999999999999986 578889999999999999999998888999999999999999999998776 46
Q ss_pred CCCCeeeCCCCCCCCCCC----CC-CcccccccccCCCCCCC
Q 015481 330 LKLKVKDDRQNCIPNRPF----QR-SPMECKTFYSHPVDCGA 366 (406)
Q Consensus 330 ~~L~~L~l~~N~l~~~p~----~~-~~~~~~~~~~np~~C~~ 366 (406)
.+|+.|++++|.+++.+. .. ..+....+.+|++.|..
T Consensus 223 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp TTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred ccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 789999999999988642 12 25666789999998863
No 39
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.5e-28 Score=242.83 Aligned_cols=227 Identities=21% Similarity=0.199 Sum_probs=174.7
Q ss_pred CCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEE
Q 015481 94 CLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLD 173 (406)
Q Consensus 94 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 173 (406)
..+++.|+|++|++.+..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|+
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 35788899999998888778888999999999999998877777888899999999999999876666788889999999
Q ss_pred eecCcCCCCCchhhhccc-cCeeeccccccccCCCC-CCCCC-CccEEEcccccCCcCCchhHHhcccccceeeeccCCC
Q 015481 174 IRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPN-NIGNS-PVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKL 250 (406)
Q Consensus 174 Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~-~~~~~-~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l 250 (406)
|++|.++...+..+..++ |++|++++|+..+.++. .+... +|++|++++|.++. +| .+..+. +|++|++++|++
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~-~L~~L~Ls~N~l 219 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLI-KLDELDLSGNHL 219 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCS-SCCEEECTTSCC
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCc-ccCEEECCCCcc
Confidence 999998844444666666 88888888544434443 44443 37888888887764 44 355555 788888888888
Q ss_pred cccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCC
Q 015481 251 KGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFC 323 (406)
Q Consensus 251 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 323 (406)
++..+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+|++..+..+..+++|+.|+|++|.+.
T Consensus 220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 7777777777888888888888887766777777788888888888887655666677788888888888764
No 40
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=2.8e-28 Score=259.57 Aligned_cols=268 Identities=19% Similarity=0.178 Sum_probs=190.8
Q ss_pred CcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccC-CchhhCCcCCceEecccccccccCchhhcCCCCCcEEE
Q 015481 95 LTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTI-PDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLD 173 (406)
Q Consensus 95 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 173 (406)
++++.|+|++|.+++..+..|.++++|++|++++|.+.+.+ |..|+++++|++|+|++|.+++..|..|.++++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 47777888888777777777777777777777777555455 56677777777777777777777777777777777777
Q ss_pred eecCcCCCCCchh--hhccc-cCeeeccccccccCCC-CCCCCC-CccEEEcccccCCcCCchhHHhc--ccc-------
Q 015481 174 IRFNQFEGEIPSA--VFDLK-LDALFLNNNKFTSSLP-NNIGNS-PVSVLVLANNNFDSCLPPSLTKM--AGT------- 239 (406)
Q Consensus 174 Ls~N~l~~~~p~~--~~~l~-L~~L~L~~n~l~~~~~-~~~~~~-~L~~L~l~~n~l~~~~p~~l~~l--~~~------- 239 (406)
|++|.+++.++.. +..++ |++|++++|.+++..+ ..++.. +|++|++++|.+++..+..+..+ . +
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~-~L~~L~L~ 182 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK-TLSFFSLA 182 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC-SSCCCEEC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCC-ccceEECC
Confidence 7777777655554 55665 7777777777765544 344443 37777777777776666655544 2 3
Q ss_pred -----------------------cceeeeccCCCcccChhhhcc------------------------------------
Q 015481 240 -----------------------LNEIILANAKLKGCLLKDIGL------------------------------------ 260 (406)
Q Consensus 240 -----------------------L~~L~l~~n~l~~~~~~~l~~------------------------------------ 260 (406)
|++|++++|++++..+..+..
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 555555555544433322211
Q ss_pred --CCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC----cCCCCCe
Q 015481 261 --LNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL----ACLKLKV 334 (406)
Q Consensus 261 --l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~L~~ 334 (406)
.++|+.|+|++|.+.+..+..+..+++|++|+|++|++++..|..|..+++|++|+|++|.+++..+ .+++|+.
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence 2567888888888887777778888999999999999988888888899999999999999887765 4678999
Q ss_pred eeCCCCCCCCCCCC----CCcccccccccCCCC
Q 015481 335 KDDRQNCIPNRPFQ----RSPMECKTFYSHPVD 363 (406)
Q Consensus 335 L~l~~N~l~~~p~~----~~~~~~~~~~~np~~ 363 (406)
|++++|.++.++.. .+.++...+.+|.+.
T Consensus 343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred EECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 99999999887632 344555566677654
No 41
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=1.5e-30 Score=245.55 Aligned_cols=243 Identities=19% Similarity=0.177 Sum_probs=199.9
Q ss_pred CCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCC-ccCCchhh-------CCcCCceEecccccccccCchhh--
Q 015481 94 CLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFC-GTIPDSFR-------NMQLLFELDVSNNQFSGCFPSVV-- 163 (406)
Q Consensus 94 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~p~~l-- 163 (406)
.++++.|++++|.+ .+|..+... |+.|++++|.++ ..+|..+. ++++|++|++++|++++.+|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 35788889999998 777766644 899999999984 56777665 79999999999999998888876
Q ss_pred cCCCCCcEEEeecCcCCCCCchhhhcc-----c-cCeeeccccccccCCCCCCCCCC-ccEEEcccccCCcC--CchhH-
Q 015481 164 LCLPSLKFLDIRFNQFEGEIPSAVFDL-----K-LDALFLNNNKFTSSLPNNIGNSP-VSVLVLANNNFDSC--LPPSL- 233 (406)
Q Consensus 164 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l-----~-L~~L~L~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~--~p~~l- 233 (406)
..+++|++|++++|.+++. |..+..+ + |++|++++|++++..+..+...+ |++|++++|++.+. ++..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 8899999999999999965 8777776 5 99999999999987777777655 99999999998764 23344
Q ss_pred -HhcccccceeeeccCCCccc--Ch-hhhccCCCCcEEEeecCCCCCccc-hhhcCCCCCCEEeCcCCcccccCchhhcC
Q 015481 234 -TKMAGTLNEIILANAKLKGC--LL-KDIGLLNQVTVFDVSFNNLVGSLP-ESMGNMKSLEQLNVAHNNLSGAIPNSICC 308 (406)
Q Consensus 234 -~~l~~~L~~L~l~~n~l~~~--~~-~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 308 (406)
..+. +|++|++++|++++. ++ ..+..+++|++|+|++|++++..| ..+..+++|++|+|++|+|+ .+|..+.
T Consensus 197 ~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~- 273 (312)
T 1wwl_A 197 PLKFP-TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP- 273 (312)
T ss_dssp TTSCT-TCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred hccCC-CCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence 5666 999999999999842 22 345678999999999999997775 45667899999999999998 8888776
Q ss_pred CCCCCEEEeeCCcCCcCCC--cCCCCCeeeCCCCCCCCC
Q 015481 309 LPKLENFTYSYNFFCTEPL--ACLKLKVKDDRQNCIPNR 345 (406)
Q Consensus 309 l~~L~~L~Ls~N~l~~~~~--~~~~L~~L~l~~N~l~~~ 345 (406)
++|++|++++|+|++.+. .+++|+.|++++|+|++.
T Consensus 274 -~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp -SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTTCC
T ss_pred -CCceEEECCCCCCCCChhHhhCCCCCEEeccCCCCCCC
Confidence 899999999999998743 566788999999998763
No 42
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=3.8e-28 Score=240.72 Aligned_cols=239 Identities=18% Similarity=0.159 Sum_probs=205.0
Q ss_pred EECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEeecCcC
Q 015481 100 IDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQF 179 (406)
Q Consensus 100 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 179 (406)
++.++.+++ .+|..+. +++++|+|++|.|++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|.+
T Consensus 59 v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 59 VVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp EECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 344445555 4665554 6899999999999988899999999999999999999988889999999999999999999
Q ss_pred CCCCchhhhccc-cCeeeccccccccCCCCCCCCCC-ccEEEcccccCCcCCch-hHHhcccccceeeeccCCCcccChh
Q 015481 180 EGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNSP-VSVLVLANNNFDSCLPP-SLTKMAGTLNEIILANAKLKGCLLK 256 (406)
Q Consensus 180 ~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~p~-~l~~l~~~L~~L~l~~n~l~~~~~~ 256 (406)
++..+..+..++ |++|++++|+++...+..+.... |++|++++|+..+.++. .+..+. +|++|++++|++++. |
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~-~L~~L~L~~n~l~~~-~- 212 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF-NLKYLNLGMCNIKDM-P- 212 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCT-TCCEEECTTSCCSSC-C-
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCC-CCCEEECCCCccccc-c-
Confidence 955555577777 99999999999866665666544 99999999655555554 466676 999999999999984 3
Q ss_pred hhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC----cCCCC
Q 015481 257 DIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL----ACLKL 332 (406)
Q Consensus 257 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~L 332 (406)
.+..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|+|++.++ .+.+|
T Consensus 213 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence 57889999999999999998889999999999999999999998889999999999999999999998886 46789
Q ss_pred CeeeCCCCCCCC
Q 015481 333 KVKDDRQNCIPN 344 (406)
Q Consensus 333 ~~L~l~~N~l~~ 344 (406)
+.|++++|.+.-
T Consensus 293 ~~L~L~~Np~~C 304 (452)
T 3zyi_A 293 VELHLHHNPWNC 304 (452)
T ss_dssp CEEECCSSCEEC
T ss_pred CEEEccCCCcCC
Confidence 999999998753
No 43
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=1.6e-27 Score=247.92 Aligned_cols=230 Identities=18% Similarity=0.202 Sum_probs=160.7
Q ss_pred CcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEe
Q 015481 95 LTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDI 174 (406)
Q Consensus 95 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 174 (406)
++++.|+|++|.+++..+..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++..+..|..+++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 57889999999988777777888999999999999988888888888999999999999888655557888899999999
Q ss_pred ecCcCCCCCchhhhccc-cCeeeccccccccCCCCCCCCCC-ccEEEcccccCCcCCchhHHh--cccccceeeeccCCC
Q 015481 175 RFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNSP-VSVLVLANNNFDSCLPPSLTK--MAGTLNEIILANAKL 250 (406)
Q Consensus 175 s~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~p~~l~~--l~~~L~~L~l~~n~l 250 (406)
++|.+++..|..+..++ |++|++++|.+++..+..+...+ |++|++++|.+++..+..+.. .. +|++|++++|++
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-~L~~L~L~~n~l 183 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS-SLKKLELSSNQI 183 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTC-EESEEECTTCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccc-cccEEECCCCcc
Confidence 99988855556777777 89999998888877777665544 888888888887755555432 24 677777777777
Q ss_pred cccChhhhccC---------------------------CCCcEEEeecCCCCCccchhhcCCCC--CCEEeCcCCccccc
Q 015481 251 KGCLLKDIGLL---------------------------NQVTVFDVSFNNLVGSLPESMGNMKS--LEQLNVAHNNLSGA 301 (406)
Q Consensus 251 ~~~~~~~l~~l---------------------------~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~Ls~N~l~~~ 301 (406)
++..+..+..+ ++|+.|++++|.+++..|..+..++. |++|+|++|++++.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 76555444332 33444445555555444444444432 55555555555544
Q ss_pred CchhhcCCCCCCEEEeeCCcCCcC
Q 015481 302 IPNSICCLPKLENFTYSYNFFCTE 325 (406)
Q Consensus 302 ~p~~l~~l~~L~~L~Ls~N~l~~~ 325 (406)
.|..+..+++|++|++++|.+++.
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~ 287 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHL 287 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEE
T ss_pred CcccccCcccccEeeCCCCccCcc
Confidence 444455555555555555554443
No 44
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=6.7e-28 Score=238.18 Aligned_cols=239 Identities=19% Similarity=0.199 Sum_probs=206.1
Q ss_pred EEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEeecCc
Q 015481 99 GIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQ 178 (406)
Q Consensus 99 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 178 (406)
.++.++.+++ .+|..+. ++++.|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|.
T Consensus 47 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 47 KVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 4455556666 5676654 789999999999998888899999999999999999998888999999999999999999
Q ss_pred CCCCCchhhhccc-cCeeeccccccccCCCCCCCCCC-ccEEEcccccCCcCCch-hHHhcccccceeeeccCCCcccCh
Q 015481 179 FEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNSP-VSVLVLANNNFDSCLPP-SLTKMAGTLNEIILANAKLKGCLL 255 (406)
Q Consensus 179 l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~p~-~l~~l~~~L~~L~l~~n~l~~~~~ 255 (406)
+++..+..+..++ |++|++++|.++...+..+.... |++|++++|+..+.++. .+..+. +|++|++++|+++. +|
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~-~L~~L~L~~n~l~~-~~ 201 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS-NLRYLNLAMCNLRE-IP 201 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS-SCCEEECTTSCCSS-CC
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc-ccCeecCCCCcCcc-cc
Confidence 9954455677777 99999999999866666666544 99999999665554554 566677 99999999999987 44
Q ss_pred hhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC----cCCC
Q 015481 256 KDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL----ACLK 331 (406)
Q Consensus 256 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~ 331 (406)
.+..+++|++|+|++|++++..|..|..+++|++|+|++|+|++..+..|.++++|+.|+|++|+|++.++ .+.+
T Consensus 202 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 202 -NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280 (440)
T ss_dssp -CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred -ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence 47889999999999999998889999999999999999999998888899999999999999999998886 4678
Q ss_pred CCeeeCCCCCCC
Q 015481 332 LKVKDDRQNCIP 343 (406)
Q Consensus 332 L~~L~l~~N~l~ 343 (406)
|+.|++++|.+.
T Consensus 281 L~~L~L~~Np~~ 292 (440)
T 3zyj_A 281 LERIHLHHNPWN 292 (440)
T ss_dssp CCEEECCSSCEE
T ss_pred CCEEEcCCCCcc
Confidence 999999999874
No 45
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=3.3e-28 Score=247.72 Aligned_cols=152 Identities=17% Similarity=0.139 Sum_probs=110.1
Q ss_pred ccEEEcccccCCcCC--chhHHhcccccceeeeccCCCc-----------------------ccCh-hhhccCCCCcEEE
Q 015481 215 VSVLVLANNNFDSCL--PPSLTKMAGTLNEIILANAKLK-----------------------GCLL-KDIGLLNQVTVFD 268 (406)
Q Consensus 215 L~~L~l~~n~l~~~~--p~~l~~l~~~L~~L~l~~n~l~-----------------------~~~~-~~l~~l~~L~~L~ 268 (406)
|++|++++|.+++.. +..+..+. +|++|++++|++. +..+ ..+..+++|++|+
T Consensus 349 L~~L~l~~n~l~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 427 (570)
T 2z63_A 349 LEFLDLSRNGLSFKGCCSQSDFGTT-SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427 (570)
T ss_dssp CCEEECCSSCCBEEEEEEHHHHTCS-CCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEE
T ss_pred CCEEeCcCCccCccccccccccccC-ccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEe
Confidence 455555555554322 34455444 5555555555443 3323 3456677777888
Q ss_pred eecCCCCCccchhhcCCCCCCEEeCcCCccc-ccCchhhcCCCCCCEEEeeCCcCCcCCC----cCCCCCeeeCCCCCCC
Q 015481 269 VSFNNLVGSLPESMGNMKSLEQLNVAHNNLS-GAIPNSICCLPKLENFTYSYNFFCTEPL----ACLKLKVKDDRQNCIP 343 (406)
Q Consensus 269 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~L~~L~l~~N~l~ 343 (406)
+++|.+++..|..+..+++|++|++++|.++ +.+|..+..+++|++|++++|++++.++ .+++|+.|++++|.++
T Consensus 428 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 507 (570)
T 2z63_A 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507 (570)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred CcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC
Confidence 8888887777778888889999999999887 5688888999999999999999998865 4678999999999999
Q ss_pred CCCC----CCCcccccccccCCCCCCCC
Q 015481 344 NRPF----QRSPMECKTFYSHPVDCGAS 367 (406)
Q Consensus 344 ~~p~----~~~~~~~~~~~~np~~C~~~ 367 (406)
++|. ..+.+....+.+||+.|...
T Consensus 508 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 508 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 8863 23556677899999998643
No 46
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2e-27 Score=220.99 Aligned_cols=224 Identities=17% Similarity=0.206 Sum_probs=150.6
Q ss_pred EEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEeecC
Q 015481 98 AGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFN 177 (406)
Q Consensus 98 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 177 (406)
+.++.++++++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45566666665 344433 356777777777777655566777777777777777777666667777777777777777
Q ss_pred c-CCCCCchhhhccc-cCeeeccccccccCCCCCCCCC-CccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccC
Q 015481 178 Q-FEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNS-PVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCL 254 (406)
Q Consensus 178 ~-l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~ 254 (406)
. +....+..+..++ |++|++++|.+++..+..+... .|++|++++|.+++..+..+..+. +|++|++++|++++..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG-NLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCC-CccEEECCCCcccccC
Confidence 6 5533355565555 7777777777665555555443 366666666666654444455565 7777777777777655
Q ss_pred hhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcC
Q 015481 255 LKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTE 325 (406)
Q Consensus 255 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 325 (406)
+..+..+++|++|+|++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+...
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 55677777777777777777766677777777777777777777755555677777777777777777653
No 47
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=4.7e-28 Score=248.61 Aligned_cols=247 Identities=19% Similarity=0.160 Sum_probs=212.5
Q ss_pred CCCCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEeccccccccc--CchhhcCCCCC
Q 015481 92 PDCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGC--FPSVVLCLPSL 169 (406)
Q Consensus 92 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L 169 (406)
..+.+++.|++++|.+ +.+| .+ .+++|++|++++|...+.+ .+..+++|++|++++|.+++. .+..+..+++|
T Consensus 304 ~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L 378 (606)
T 3vq2_A 304 PKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL 378 (606)
T ss_dssp CTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCC
T ss_pred cccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcc
Confidence 3556778888888887 5666 45 7888888888888655444 467889999999999999865 37888999999
Q ss_pred cEEEeecCcCCCCCchhhhccc-cCeeeccccccccCCC-CCCCCC-CccEEEcccccCCcCCchhHHhcccccceeeec
Q 015481 170 KFLDIRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLP-NNIGNS-PVSVLVLANNNFDSCLPPSLTKMAGTLNEIILA 246 (406)
Q Consensus 170 ~~L~Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~-~~~~~~-~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~ 246 (406)
++|++++|.+. .+|..+..++ |++|++++|++.+..+ ..+... .|++|++++|.+.+..|..+..+. +|++|+++
T Consensus 379 ~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~ 456 (606)
T 3vq2_A 379 RHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT-SLNTLKMA 456 (606)
T ss_dssp CEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT-TCCEEECT
T ss_pred cEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC-CCCEEECC
Confidence 99999999998 5777777777 9999999999998776 455554 499999999999998888898888 99999999
Q ss_pred cCCCcc-cChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcC
Q 015481 247 NAKLKG-CLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTE 325 (406)
Q Consensus 247 ~n~l~~-~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 325 (406)
+|++++ .+|..+..+++|++|+|++|++++..|..+..+++|++|+|++|++++.+|..+..+++|+.|++++|+|+.+
T Consensus 457 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 536 (606)
T 3vq2_A 457 GNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536 (606)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCE
T ss_pred CCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCccc
Confidence 999998 4788899999999999999999988899999999999999999999988899999999999999999999977
Q ss_pred CC---cCC-CCCeeeCCCCCCCCC
Q 015481 326 PL---ACL-KLKVKDDRQNCIPNR 345 (406)
Q Consensus 326 ~~---~~~-~L~~L~l~~N~l~~~ 345 (406)
+. .++ +|+.+++++|.+...
T Consensus 537 p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 537 KGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp ESCGGGSCTTCCEEECCSCCCCCS
T ss_pred CHhHhhhcccCcEEEccCCCcccC
Confidence 66 344 599999999998754
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.3e-27 Score=229.15 Aligned_cols=263 Identities=16% Similarity=0.177 Sum_probs=217.5
Q ss_pred EEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEeecCc
Q 015481 99 GIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQ 178 (406)
Q Consensus 99 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 178 (406)
..+.++++++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|++++..+..|.++++|++|++++|.
T Consensus 35 ~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 35 ICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 4889999988 6676655 589999999999997666689999999999999999998888889999999999999999
Q ss_pred CCCCCchhhhccc-cCeeeccccccccCCC-CCCCC-CCccEEEccccc-CCcCCchhHHhcccccceeeeccCCCcccC
Q 015481 179 FEGEIPSAVFDLK-LDALFLNNNKFTSSLP-NNIGN-SPVSVLVLANNN-FDSCLPPSLTKMAGTLNEIILANAKLKGCL 254 (406)
Q Consensus 179 l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~-~~~~~-~~L~~L~l~~n~-l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~ 254 (406)
+++..+..+..++ |++|++++|++++... ..+.. .+|++|++++|+ +.+..+..+..+. +|++|++++|++++..
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT-FLEELEIDASDLQSYE 190 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC-EEEEEEEEETTCCEEC
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCC-CCCEEECCCCCcCccC
Confidence 9944344477777 9999999999984433 35554 459999999995 6665567788887 9999999999999988
Q ss_pred hhhhccCCCCcEEEeecCCCCCccchh-hcCCCCCCEEeCcCCcccccCchhh---cCCCCCCEEEeeCCcCCcCC----
Q 015481 255 LKDIGLLNQVTVFDVSFNNLVGSLPES-MGNMKSLEQLNVAHNNLSGAIPNSI---CCLPKLENFTYSYNFFCTEP---- 326 (406)
Q Consensus 255 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~~---- 326 (406)
+..+..+++|++|++++|.++ .+|.. +..+++|++|++++|.+++..+..+ .....++.+++++|.+++..
T Consensus 191 ~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l 269 (353)
T 2z80_A 191 PKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV 269 (353)
T ss_dssp TTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred HHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence 999999999999999999997 55544 5568999999999999996655443 34677899999999987631
Q ss_pred ----CcCCCCCeeeCCCCCCCCCCCC----CCcccccccccCCCCCCC
Q 015481 327 ----LACLKLKVKDDRQNCIPNRPFQ----RSPMECKTFYSHPVDCGA 366 (406)
Q Consensus 327 ----~~~~~L~~L~l~~N~l~~~p~~----~~~~~~~~~~~np~~C~~ 366 (406)
..+++|+.|++++|+|+.+|.. .+.++...+.+||+.|..
T Consensus 270 ~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 270 MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred HHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 2578999999999999999843 355666789999999964
No 49
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.2e-27 Score=222.62 Aligned_cols=233 Identities=17% Similarity=0.187 Sum_probs=198.4
Q ss_pred CCCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEeccccc-ccccCchhhcCCCCCcE
Q 015481 93 DCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQ-FSGCFPSVVLCLPSLKF 171 (406)
Q Consensus 93 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~ 171 (406)
..+++++|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|. ++...+..|..+++|++
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 34689999999999998887889999999999999999998888999999999999999997 88777889999999999
Q ss_pred EEeecCcCCCCCchhhhccc-cCeeeccccccccCCCCCCCCC-CccEEEcccccCCcCCchhHHhcccccceeeeccCC
Q 015481 172 LDIRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNS-PVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAK 249 (406)
Q Consensus 172 L~Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~ 249 (406)
|++++|.+++..+..+..++ |++|++++|++++..+..+... +|++|++++|.+++..+..+..+. +|++|++++|+
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~ 188 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH-SLDRLLLHQNR 188 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSC
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcc-ccCEEECCCCc
Confidence 99999999977677788887 9999999999997666666654 499999999999975555677777 99999999999
Q ss_pred CcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC
Q 015481 250 LKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL 327 (406)
Q Consensus 250 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~ 327 (406)
+++..+..+..+++|++|+|++|++++..+..+..+++|++|++++|.+....+.. .-...++.+..+.|.+....|
T Consensus 189 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p 265 (285)
T 1ozn_A 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLP 265 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEES
T ss_pred ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCc
Confidence 99988999999999999999999999777778999999999999999998554321 111223444466676665444
No 50
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=1.5e-26 Score=213.58 Aligned_cols=218 Identities=17% Similarity=0.220 Sum_probs=160.1
Q ss_pred CCCCCcceeecCCCCCCCCCCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEeccccc
Q 015481 75 PNVCNYTGVYCAPAPDDPDCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQ 154 (406)
Q Consensus 75 ~~~c~w~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 154 (406)
.+.|.|.|+.|... .+++.+++++++++ .+|..+. .++++|++++|.+++..+..|.++++|++|++++|.
T Consensus 2 ~~~C~~~~~~C~c~------~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 72 (270)
T 2o6q_A 2 EALCKKDGGVCSCN------NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK 72 (270)
T ss_dssp CCCBGGGTCSBEEE------TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC
T ss_pred CccCCCCCCCCEeC------CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc
Confidence 36799999999642 25678999999998 5676554 689999999999997666789999999999999999
Q ss_pred ccccCchhhcCCCCCcEEEeecCcCCCCCchhhhccc-cCeeeccccccccCCCCCCCCCCccEEEcccccCCcCCchhH
Q 015481 155 FSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSL 233 (406)
Q Consensus 155 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l 233 (406)
++...+..|..+++|++|++++|.+++..+..+..+. |++|++++|++++. .+..+
T Consensus 73 l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------------~~~~~ 129 (270)
T 2o6q_A 73 LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSL-----------------------PPRVF 129 (270)
T ss_dssp CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCC-----------------------CTTTT
T ss_pred cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCee-----------------------CHHHh
Confidence 9976666778899999999999999843333344444 55555555555432 22333
Q ss_pred HhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCC
Q 015481 234 TKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLE 313 (406)
Q Consensus 234 ~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 313 (406)
..+. +|++|++++|++++..+..+..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+
T Consensus 130 ~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (270)
T 2o6q_A 130 DSLT-KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208 (270)
T ss_dssp TTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CcCc-CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCC
Confidence 4444 777777777777765555667777777778877777755555677777788888888877755455567777777
Q ss_pred EEEeeCCcCCcC
Q 015481 314 NFTYSYNFFCTE 325 (406)
Q Consensus 314 ~L~Ls~N~l~~~ 325 (406)
.|++++|.+...
T Consensus 209 ~L~l~~N~~~c~ 220 (270)
T 2o6q_A 209 MLQLQENPWDCT 220 (270)
T ss_dssp EEECCSSCBCCS
T ss_pred EEEecCCCeeCC
Confidence 777777776543
No 51
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1.2e-27 Score=226.23 Aligned_cols=236 Identities=13% Similarity=0.105 Sum_probs=183.1
Q ss_pred cEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEee
Q 015481 96 TVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIR 175 (406)
Q Consensus 96 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 175 (406)
+++.++++.+.+...+...+..+++|++|++++|.+++..|..|.++++|++|++++|++++..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 56777888888776555556677788889998888887767788888888999998888886554 7888888899998
Q ss_pred cCcCCCCCchhhhccccCeeeccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccCh
Q 015481 176 FNQFEGEIPSAVFDLKLDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLL 255 (406)
Q Consensus 176 ~N~l~~~~p~~~~~l~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~ 255 (406)
+|.++ .++.. ..|++|++++|++++..+..+ ..|++|++++|.+++..+..+..+. +|++|++++|++++..+
T Consensus 89 ~n~l~-~l~~~---~~L~~L~l~~n~l~~~~~~~~--~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 89 NNYVQ-ELLVG---PSIETLHAANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SSEEE-EEEEC---TTCCEEECCSSCCSEEEECCC--SSCEEEECCSSCCCSGGGBCTGGGS-SEEEEECTTSCCCEEEG
T ss_pred CCccc-cccCC---CCcCEEECCCCccCCcCcccc--CCCCEEECCCCCCCCccchhhhccC-CCCEEECCCCCCCcccH
Confidence 88887 33321 238888888888876555443 3488889999888876666677777 88999999998888766
Q ss_pred hhh-ccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC---cCCC
Q 015481 256 KDI-GLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL---ACLK 331 (406)
Q Consensus 256 ~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~ 331 (406)
..+ ..+++|++|+|++|.+++ ++. ...+++|++|+|++|+++ .+|..+..+++|+.|++++|.|++++. .+.+
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~ 238 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYD-VKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQN 238 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCE-EEC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTT
T ss_pred HHHhhccCcCCEEECCCCcCcc-ccc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCcccchhhHhhcCCC
Confidence 665 468889999999998884 343 335788999999999888 455568888889999999998887655 4567
Q ss_pred CCeeeCCCCCCC
Q 015481 332 LKVKDDRQNCIP 343 (406)
Q Consensus 332 L~~L~l~~N~l~ 343 (406)
|+.|++++|.++
T Consensus 239 L~~L~l~~N~~~ 250 (317)
T 3o53_A 239 LEHFDLRGNGFH 250 (317)
T ss_dssp CCEEECTTCCCB
T ss_pred CCEEEccCCCcc
Confidence 888999988887
No 52
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=2.5e-26 Score=219.51 Aligned_cols=255 Identities=18% Similarity=0.284 Sum_probs=201.9
Q ss_pred CCCCCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCc
Q 015481 91 DPDCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLK 170 (406)
Q Consensus 91 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 170 (406)
...+++++.|++++|.+++ + +.+..+++|++|++++|.+++ ++. +..+++|++|++++|.....++ .+..+++|+
T Consensus 84 ~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~ 158 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLN 158 (347)
T ss_dssp GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCC
T ss_pred hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCccccc-chhhCCCCc
Confidence 3467899999999999985 3 469999999999999999984 444 8899999999999997664444 488999999
Q ss_pred EEEeecCcCCCCCchhhhccc-cCeeeccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccceeeeccCC
Q 015481 171 FLDIRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAK 249 (406)
Q Consensus 171 ~L~Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~ 249 (406)
+|++++|.+. .++. +..++ |++|++++|.+.+. +.......++.+++++|.+.+..+ +..+. +|++|++++|+
T Consensus 159 ~L~l~~~~~~-~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~-~L~~L~l~~n~ 232 (347)
T 4fmz_A 159 YLTVTESKVK-DVTP-IANLTDLYSLSLNYNQIEDI-SPLASLTSLHYFTAYVNQITDITP--VANMT-RLNSLKIGNNK 232 (347)
T ss_dssp EEECCSSCCC-CCGG-GGGCTTCSEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCCGG--GGGCT-TCCEEECCSSC
T ss_pred EEEecCCCcC-Cchh-hccCCCCCEEEccCCccccc-ccccCCCccceeecccCCCCCCch--hhcCC-cCCEEEccCCc
Confidence 9999999998 4444 66666 99999999998744 333333458999999999887433 66666 89999999999
Q ss_pred CcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC--
Q 015481 250 LKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL-- 327 (406)
Q Consensus 250 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-- 327 (406)
+++..+ +..+++|++|++++|.+++ + ..+..+++|++|++++|.+++ + ..+..+++|+.|++++|.+++.++
T Consensus 233 l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~ 306 (347)
T 4fmz_A 233 ITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEV 306 (347)
T ss_dssp CCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHH
T ss_pred cCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhH
Confidence 987443 8889999999999999984 4 458888999999999999884 4 457888999999999999987765
Q ss_pred --cCCCCCeeeCCCCCCCCCCC--CCCcccccccccCCC
Q 015481 328 --ACLKLKVKDDRQNCIPNRPF--QRSPMECKTFYSHPV 362 (406)
Q Consensus 328 --~~~~L~~L~l~~N~l~~~p~--~~~~~~~~~~~~np~ 362 (406)
.+++|+.|++++|++++.+. ..+.++...+.+|++
T Consensus 307 l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 307 IGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVI 345 (347)
T ss_dssp HHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC--
T ss_pred hhccccCCEEEccCCccccccChhhhhccceeehhhhcc
Confidence 57889999999999988753 334455556666654
No 53
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=6.7e-26 Score=216.52 Aligned_cols=255 Identities=17% Similarity=0.227 Sum_probs=212.0
Q ss_pred CCCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEE
Q 015481 93 DCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFL 172 (406)
Q Consensus 93 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 172 (406)
.++++++|++++|.+++. +. +..+++|++|++++|.++. ++ .+.++++|++|++++|.+++. +. +..+++|++|
T Consensus 64 ~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L 137 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSL 137 (347)
T ss_dssp GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEE
T ss_pred hcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccCc-hh-hccCCceeEE
Confidence 567999999999999854 44 9999999999999999984 44 699999999999999999854 43 8899999999
Q ss_pred EeecCcCCCCCchhhhccc-cCeeeccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCc
Q 015481 173 DIRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLK 251 (406)
Q Consensus 173 ~Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~ 251 (406)
++++|.....++. +..++ |++|++++|.+.+..+ ......|++|++++|.+.+ ++. +..+. +|++|++++|.+.
T Consensus 138 ~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~-~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 138 NLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIED-ISP-LASLT-SLHYFTAYVNQIT 212 (347)
T ss_dssp ECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCC-CGG-GGGCT-TCCEEECCSSCCC
T ss_pred ECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccc-ccc-ccCCC-ccceeecccCCCC
Confidence 9999976645554 66666 9999999999975443 2333459999999999987 443 66777 9999999999998
Q ss_pred ccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC--cC
Q 015481 252 GCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL--AC 329 (406)
Q Consensus 252 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~--~~ 329 (406)
+..+ +..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ + ..+..+++|++|++++|.+++.+. .+
T Consensus 213 ~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~~~~~~l 286 (347)
T 4fmz_A 213 DITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDISVLNNL 286 (347)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCCGGGGGC
T ss_pred CCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCChhhcCC
Confidence 8544 8899999999999999994 444 8899999999999999984 4 468899999999999999998743 67
Q ss_pred CCCCeeeCCCCCCCCCC----CCCCcccccccccCCCCC
Q 015481 330 LKLKVKDDRQNCIPNRP----FQRSPMECKTFYSHPVDC 364 (406)
Q Consensus 330 ~~L~~L~l~~N~l~~~p----~~~~~~~~~~~~~np~~C 364 (406)
++|+.|++++|.+++.+ ...+.+....+.+|++..
T Consensus 287 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred CCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence 89999999999998765 234566667788887654
No 54
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=2.2e-26 Score=236.68 Aligned_cols=106 Identities=25% Similarity=0.282 Sum_probs=94.9
Q ss_pred ccceeeeccCCCc-ccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEe
Q 015481 239 TLNEIILANAKLK-GCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTY 317 (406)
Q Consensus 239 ~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 317 (406)
.|++|++++|++. +..|..+..+++|++|+|++|++++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|
T Consensus 470 ~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 549 (635)
T 4g8a_A 470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 549 (635)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEEC
T ss_pred hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEEC
Confidence 6888999999754 456778999999999999999999888999999999999999999999888888999999999999
Q ss_pred eCCcCCcCCCc----C-CCCCeeeCCCCCCCC
Q 015481 318 SYNFFCTEPLA----C-LKLKVKDDRQNCIPN 344 (406)
Q Consensus 318 s~N~l~~~~~~----~-~~L~~L~l~~N~l~~ 344 (406)
++|+|++.++. + .+|+.|++++|+++-
T Consensus 550 s~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 550 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 99999999873 3 479999999997754
No 55
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=2.8e-26 Score=233.48 Aligned_cols=175 Identities=14% Similarity=0.113 Sum_probs=131.7
Q ss_pred CcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEe
Q 015481 95 LTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDI 174 (406)
Q Consensus 95 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 174 (406)
.+++.|++++|++++..+..|.++++|++|++++|++++..+..|+++++|++|++++|.+++..|..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 47888888888888777778888888888888888888776778888888888888888888777788888888888888
Q ss_pred ecCcCCCCCchhhhccc-cCeeecccccccc-CCCCCCCCC-CccEEEcccccCCcCCchhHHhccccc----ceeeecc
Q 015481 175 RFNQFEGEIPSAVFDLK-LDALFLNNNKFTS-SLPNNIGNS-PVSVLVLANNNFDSCLPPSLTKMAGTL----NEIILAN 247 (406)
Q Consensus 175 s~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~-~~~~~~~~~-~L~~L~l~~n~l~~~~p~~l~~l~~~L----~~L~l~~ 247 (406)
++|.+++..+..+..+. |++|++++|.+++ .+|..+... +|++|++++|.+++..+..+..+. +| +.|++++
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~~~~~L~l~~ 186 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH-QMPLLNLSLDLSL 186 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHH-TCTTCCCEEECTT
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchh-ccchhhhhcccCC
Confidence 88888843333566776 8888888888876 457777654 488888888888876677777766 66 6777777
Q ss_pred CCCcccChhhhccCCCCcEEEeec
Q 015481 248 AKLKGCLLKDIGLLNQVTVFDVSF 271 (406)
Q Consensus 248 n~l~~~~~~~l~~l~~L~~L~Ls~ 271 (406)
|.+++..+..+... +|+.|++++
T Consensus 187 n~l~~~~~~~~~~~-~L~~L~l~~ 209 (570)
T 2z63_A 187 NPMNFIQPGAFKEI-RLHKLTLRN 209 (570)
T ss_dssp CCCCEECTTTTTTC-EEEEEEEES
T ss_pred CCceecCHHHhccC-cceeEeccc
Confidence 77666444433322 344444333
No 56
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=1e-25 Score=224.09 Aligned_cols=239 Identities=21% Similarity=0.295 Sum_probs=134.9
Q ss_pred CCCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEE
Q 015481 93 DCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFL 172 (406)
Q Consensus 93 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 172 (406)
.+++++.|++++|.+.+..+ +.++++|++|++++|.+++..+ ++++++|++|++++|.+++..+ +..+++|++|
T Consensus 66 ~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 139 (466)
T 1o6v_A 66 YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRL 139 (466)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred hhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEE
Confidence 45678888888888775433 7777888888888887774433 7777778888887777775432 6677777777
Q ss_pred EeecCcCCCCCch--------------------hhhccc-cCeeeccccccccCCCCCCCCCCccEEEcccccCCcCCc-
Q 015481 173 DIRFNQFEGEIPS--------------------AVFDLK-LDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLP- 230 (406)
Q Consensus 173 ~Ls~N~l~~~~p~--------------------~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p- 230 (406)
++++|.+.+ ++. .+..++ |++|++++|.+.+. +.......|++|++++|.+.+..+
T Consensus 140 ~l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~~ 217 (466)
T 1o6v_A 140 ELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPL 217 (466)
T ss_dssp EEEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGGG
T ss_pred ECCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-hhhccCCCCCEEEecCCcccccccc
Confidence 777777663 321 122233 55555555555422 211112235555555555444222
Q ss_pred -------------------hhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEE
Q 015481 231 -------------------PSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQL 291 (406)
Q Consensus 231 -------------------~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 291 (406)
..+..+. +|++|++++|++++..+ +..+++|++|++++|.+++..+ +..+++|++|
T Consensus 218 ~~l~~L~~L~l~~n~l~~~~~l~~l~-~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 292 (466)
T 1o6v_A 218 GILTNLDELSLNGNQLKDIGTLASLT-NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNL 292 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGGGCT-TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred cccCCCCEEECCCCCcccchhhhcCC-CCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeE
Confidence 1233333 44555555554444222 4455555555555555553222 4555555666
Q ss_pred eCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC--cCCCCCeeeCCCCCCCCCC
Q 015481 292 NVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL--ACLKLKVKDDRQNCIPNRP 346 (406)
Q Consensus 292 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~L~~L~l~~N~l~~~p 346 (406)
++++|++++..+ +..+++|+.|++++|.+++.++ .+++|+.|++++|.+++.+
T Consensus 293 ~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~ 347 (466)
T 1o6v_A 293 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS 347 (466)
T ss_dssp ECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCG
T ss_pred EcCCCcccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCch
Confidence 666665553222 5556666666666666665544 4556666666666666653
No 57
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=2.1e-25 Score=221.91 Aligned_cols=258 Identities=22% Similarity=0.299 Sum_probs=187.1
Q ss_pred CCCCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCc-----------
Q 015481 92 PDCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFP----------- 160 (406)
Q Consensus 92 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p----------- 160 (406)
..+.+++.|++++|.+.+..+ +.++++|++|++++|.+++. +. +.++++|++|++++|.+++...
T Consensus 87 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 162 (466)
T 1o6v_A 87 KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLS 162 (466)
T ss_dssp TTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEE
T ss_pred hccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEECCCCccCCChhhccCCcccEee
Confidence 356788888888888876544 88888888888888888753 33 7777777777777777664211
Q ss_pred --------hhhcCCCCCcEEEeecCcCCCCCchhhhccc-cCeeeccccccccCCC--------------------CCCC
Q 015481 161 --------SVVLCLPSLKFLDIRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLP--------------------NNIG 211 (406)
Q Consensus 161 --------~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~--------------------~~~~ 211 (406)
..+..+++|++|++++|.++ .++. +..++ |++|++++|.+.+..+ ..+.
T Consensus 163 l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~ 240 (466)
T 1o6v_A 163 FGNQVTDLKPLANLTTLERLDISSNKVS-DISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLA 240 (466)
T ss_dssp EEESCCCCGGGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGG
T ss_pred cCCcccCchhhccCCCCCEEECcCCcCC-CChh-hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhh
Confidence 12445566666666666665 2322 33333 5555555444443221 1222
Q ss_pred -CCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCE
Q 015481 212 -NSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQ 290 (406)
Q Consensus 212 -~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 290 (406)
...|+.|++++|.+.+..+ +..+. +|++|++++|++++..+ +..+++|++|++++|++++..+ +..+++|++
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 313 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAP--LSGLT-KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTY 313 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GTTCT-TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSE
T ss_pred cCCCCCEEECCCCccccchh--hhcCC-CCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCE
Confidence 2448899999999987444 67777 99999999999998544 8899999999999999996544 889999999
Q ss_pred EeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC--cCCCCCeeeCCCCCCCCCC--CCCCcccccccccCCCCC
Q 015481 291 LNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL--ACLKLKVKDDRQNCIPNRP--FQRSPMECKTFYSHPVDC 364 (406)
Q Consensus 291 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~L~~L~l~~N~l~~~p--~~~~~~~~~~~~~np~~C 364 (406)
|++++|++++..| +..+++|+.|++++|.+++... .+.+|+.|++++|++++.+ ...+.+....+.+|++..
T Consensus 314 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp EECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEEEEC
T ss_pred EECcCCcCCCchh--hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCcccC
Confidence 9999999997655 7899999999999999998743 6789999999999999875 233444445566666554
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=6.8e-28 Score=227.31 Aligned_cols=223 Identities=20% Similarity=0.252 Sum_probs=188.6
Q ss_pred cEEEEECCCCCc-cccCccccc-------CCCCCCEEEcCCCcCCccCCchh--hCCcCCceEecccccccccCchhhcC
Q 015481 96 TVAGIDLNQANI-AGTLPEKLG-------LLQDLALFHINSNRFCGTIPDSF--RNMQLLFELDVSNNQFSGCFPSVVLC 165 (406)
Q Consensus 96 ~l~~L~L~~n~l-~~~~p~~l~-------~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p~~l~~ 165 (406)
.++.|+|++|.+ .+.+|..+. ++++|++|++++|++++.+|..+ +.+++|++|++++|++++. |..+..
T Consensus 64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~ 142 (312)
T 1wwl_A 64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAE 142 (312)
T ss_dssp HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHH
T ss_pred HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHH
Confidence 388899999999 456776665 79999999999999999999876 8999999999999999977 777777
Q ss_pred C-----CCCcEEEeecCcCCCCCchhhhccc-cCeeeccccccccCC--CCCC--CC-CCccEEEcccccCCc--CCchh
Q 015481 166 L-----PSLKFLDIRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSL--PNNI--GN-SPVSVLVLANNNFDS--CLPPS 232 (406)
Q Consensus 166 l-----~~L~~L~Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~--~~~~--~~-~~L~~L~l~~n~l~~--~~p~~ 232 (406)
+ ++|++|++++|++.+..+..+..++ |++|++++|++.+.+ +..+ .. .+|++|++++|.+++ .++..
T Consensus 143 l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 222 (312)
T 1wwl_A 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222 (312)
T ss_dssp HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence 6 9999999999999977778888888 999999999987642 2222 33 459999999999984 23333
Q ss_pred H-HhcccccceeeeccCCCcccCh-hhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCC
Q 015481 233 L-TKMAGTLNEIILANAKLKGCLL-KDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLP 310 (406)
Q Consensus 233 l-~~l~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 310 (406)
+ ..+. +|++|++++|++++..+ ..+..+++|++|+|++|+++ .+|..+. ++|++|+|++|+|++. |. +..++
T Consensus 223 ~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~ 296 (312)
T 1wwl_A 223 LAAARV-QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELP 296 (312)
T ss_dssp HHHTTC-CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSC
T ss_pred HHhcCC-CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCC
Confidence 3 3445 99999999999999764 45677899999999999999 8888776 8999999999999955 66 89999
Q ss_pred CCCEEEeeCCcCCcC
Q 015481 311 KLENFTYSYNFFCTE 325 (406)
Q Consensus 311 ~L~~L~Ls~N~l~~~ 325 (406)
+|++|++++|.+++.
T Consensus 297 ~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 297 QVGNLSLKGNPFLDS 311 (312)
T ss_dssp EEEEEECTTCTTTCC
T ss_pred CCCEEeccCCCCCCC
Confidence 999999999999874
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.5e-26 Score=231.14 Aligned_cols=214 Identities=14% Similarity=0.113 Sum_probs=143.0
Q ss_pred CCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEeecCcCCCCCchhhhccccCeeec
Q 015481 118 LQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLKLDALFL 197 (406)
Q Consensus 118 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~L~~L~L 197 (406)
+++|++|+|++|.+++..|..|+++++|++|+|++|.+++..| +..+++|++|+|++|.++ .++.. ..|++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~~---~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVG---PSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEEC---TTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCCC---CCcCEEEC
Confidence 3466777777777766555666667777777777777665444 666677777777777666 23211 23677777
Q ss_pred cccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhc-cCCCCcEEEeecCCCCC
Q 015481 198 NNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIG-LLNQVTVFDVSFNNLVG 276 (406)
Q Consensus 198 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~Ls~N~l~~ 276 (406)
++|.+++..+..+ ..|+.|++++|.+++..|..+..+. +|++|++++|.+++..|..+. .+++|++|+|++|.+++
T Consensus 107 ~~N~l~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEECCC--SSCEEEECCSSCCCSGGGBCGGGGS-SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcccc--CCCCEEECCCCCCCCCCchhhcCCC-CCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 7777665544332 3477777777777776666666666 777777777777776666664 67777777777777774
Q ss_pred ccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC---cCCCCCeeeCCCCCCC
Q 015481 277 SLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL---ACLKLKVKDDRQNCIP 343 (406)
Q Consensus 277 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~L~~L~l~~N~l~ 343 (406)
. +. +..+++|++|+|++|.|++ +|..+..+++|+.|+|++|.|+++++ .+++|+.|++++|.+.
T Consensus 184 ~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 184 V-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp E-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred c-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 4 32 3357777777887777774 44457777777777887777777654 3456777777777776
No 60
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=3e-25 Score=220.03 Aligned_cols=227 Identities=19% Similarity=0.175 Sum_probs=157.3
Q ss_pred CCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEE
Q 015481 94 CLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLD 173 (406)
Q Consensus 94 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 173 (406)
+++++.|++++|.+++. | .++.+++|++|++++|.+++ +| ++.+++|++|++++|++++. + +..+++|++|+
T Consensus 41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence 44777888888877754 4 57777888888888888775 33 77777888888888887754 3 67778888888
Q ss_pred eecCcCCCCCchhhhccc-cCeeeccccccccCCCCCCCC-CCccEEEcccccCCcCCchhHHhcccccceeeeccCCCc
Q 015481 174 IRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGN-SPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLK 251 (406)
Q Consensus 174 Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~ 251 (406)
+++|.+++ ++ +..++ |++|++++|++++. + ++. ..|++|++++|...+.+ .+..+. +|++|++++|+++
T Consensus 113 L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~-~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 113 CDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQT-QLTTLDCSFNKIT 183 (457)
T ss_dssp CCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCT-TCCEEECCSSCCC
T ss_pred CCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCC-cCCEEECCCCccc
Confidence 88888774 44 55555 88888888877753 2 333 34777777777655544 245555 7777777777777
Q ss_pred ccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC-cCC
Q 015481 252 GCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL-ACL 330 (406)
Q Consensus 252 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~ 330 (406)
+ ++ +..+++|+.|++++|++++. .++.+++|++|++++|++++ +| +..+++|+.|++++|.+++.++ .+.
T Consensus 184 ~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~ 254 (457)
T 3bz5_A 184 E-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLS 254 (457)
T ss_dssp C-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCT
T ss_pred e-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCC
Confidence 7 33 66777777777777777743 36677777777777777775 55 6677777777777777777665 455
Q ss_pred CCCeeeCCCCCCCCCC
Q 015481 331 KLKVKDDRQNCIPNRP 346 (406)
Q Consensus 331 ~L~~L~l~~N~l~~~p 346 (406)
+|+.|++++|.++.+.
T Consensus 255 ~L~~L~l~~n~L~~L~ 270 (457)
T 3bz5_A 255 KLTTLHCIQTDLLEID 270 (457)
T ss_dssp TCCEEECTTCCCSCCC
T ss_pred CCCEEeccCCCCCEEE
Confidence 5666555555555443
No 61
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=1.9e-25 Score=206.66 Aligned_cols=206 Identities=17% Similarity=0.184 Sum_probs=124.3
Q ss_pred cEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEee
Q 015481 96 TVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIR 175 (406)
Q Consensus 96 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 175 (406)
+++.|++++|++++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555554444445555555555555555554444445555555555555555554444445555555555555
Q ss_pred cCcCCCCCchhhhccccCeeeccccccccCCCCCCCCC-CccEEEcccccCCc-CCchhHHhcccccceeeeccCCCccc
Q 015481 176 FNQFEGEIPSAVFDLKLDALFLNNNKFTSSLPNNIGNS-PVSVLVLANNNFDS-CLPPSLTKMAGTLNEIILANAKLKGC 253 (406)
Q Consensus 176 ~N~l~~~~p~~~~~l~L~~L~L~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~-~~p~~l~~l~~~L~~L~l~~n~l~~~ 253 (406)
+|.+. +..+..+... .|++|++++|.+.+ .+|..+..+. +|++|++++|++++.
T Consensus 109 ~n~l~-----------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~-~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 109 ETNLA-----------------------SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLSSNKIQSI 164 (276)
T ss_dssp TSCCC-----------------------CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-TCCEEECCSSCCCEE
T ss_pred CCCcc-----------------------ccCchhcccCCCCCEEECcCCccceecCchhhccCC-CCCEEECCCCCCCcC
Confidence 55554 3222223222 25555555555544 2466677776 788888888888776
Q ss_pred ChhhhccCCCCc----EEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCC
Q 015481 254 LLKDIGLLNQVT----VFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEP 326 (406)
Q Consensus 254 ~~~~l~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 326 (406)
.+..+..+.+|+ .|++++|.+++..+..+ ...+|++|+|++|++++..+..+..+++|+.|++++|.+++..
T Consensus 165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred CHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 666666666666 78888888884444333 4457888888888888555555677888888888888887643
No 62
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=2.6e-26 Score=227.45 Aligned_cols=242 Identities=22% Similarity=0.253 Sum_probs=130.2
Q ss_pred CCCcEEEEECCCCCccccCcccccCCCCC-------------CEEEcCCCcCCccCCchhhCCcCCceEecccccccccC
Q 015481 93 DCLTVAGIDLNQANIAGTLPEKLGLLQDL-------------ALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCF 159 (406)
Q Consensus 93 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L-------------~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 159 (406)
.+.+++.|++++|.+.|.+|..++++.+| ++|++++|.+++ +|.. .++|++|++++|.+++ +
T Consensus 32 ~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-l 106 (454)
T 1jl5_A 32 NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-L 106 (454)
T ss_dssp --CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-C
T ss_pred cccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-c
Confidence 34445555555555555555555554432 555555555552 2321 2355556666665554 3
Q ss_pred chhhcCCCCCcEEEeecCcCCCCCchhhhccccCeeeccccccccCCCCCCCC-CCccEEEcccccCCcCCchhHHhccc
Q 015481 160 PSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLKLDALFLNNNKFTSSLPNNIGN-SPVSVLVLANNNFDSCLPPSLTKMAG 238 (406)
Q Consensus 160 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~ 238 (406)
|.. +++|++|++++|.++ .++... ..|++|++++|++++ +|. ++. ..|++|++++|.+++ +|..+ .
T Consensus 107 p~~---~~~L~~L~l~~n~l~-~l~~~~--~~L~~L~L~~n~l~~-lp~-~~~l~~L~~L~l~~N~l~~-lp~~~---~- 173 (454)
T 1jl5_A 107 PEL---PQSLKSLLVDNNNLK-ALSDLP--PLLEYLGVSNNQLEK-LPE-LQNSSFLKIIDVDNNSLKK-LPDLP---P- 173 (454)
T ss_dssp CCC---CTTCCEEECCSSCCS-CCCSCC--TTCCEEECCSSCCSS-CCC-CTTCTTCCEEECCSSCCSC-CCCCC---T-
T ss_pred ccc---cCCCcEEECCCCccC-cccCCC--CCCCEEECcCCCCCC-Ccc-cCCCCCCCEEECCCCcCcc-cCCCc---c-
Confidence 322 245555555555555 222211 126666666666664 453 333 336667776666664 44322 2
Q ss_pred ccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEee
Q 015481 239 TLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYS 318 (406)
Q Consensus 239 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 318 (406)
+|++|++++|++++ +| .++.+++|++|++++|++++ +|... ++|++|++++|.++ .+| .+..+++|++|+++
T Consensus 174 ~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~ 245 (454)
T 1jl5_A 174 SLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYAD 245 (454)
T ss_dssp TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECC
T ss_pred cccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECC
Confidence 66666666666666 34 46666667777766666663 33321 35666666666666 555 36666667777777
Q ss_pred CCcCCcCCCcCCCCCeeeCCCCCCCCCCCCCCcccccccccC
Q 015481 319 YNFFCTEPLACLKLKVKDDRQNCIPNRPFQRSPMECKTFYSH 360 (406)
Q Consensus 319 ~N~l~~~~~~~~~L~~L~l~~N~l~~~p~~~~~~~~~~~~~n 360 (406)
+|++++.+....+|+.|++++|+++++|.....+....+.+|
T Consensus 246 ~N~l~~l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N 287 (454)
T 1jl5_A 246 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN 287 (454)
T ss_dssp SSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred CCcCCcccccccccCEEECCCCcccccCcccCcCCEEECcCC
Confidence 776666555455666666666666665543333333333333
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.9e-26 Score=216.65 Aligned_cols=231 Identities=20% Similarity=0.218 Sum_probs=195.1
Q ss_pred CCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEE
Q 015481 94 CLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLD 173 (406)
Q Consensus 94 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 173 (406)
.+++++|+|++|.+++..|..|..+++|++|++++|.+++..+ +..+++|++|++++|++++.. ..++|++|+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEE
Confidence 4589999999999998888899999999999999999986554 899999999999999998532 348999999
Q ss_pred eecCcCCCCCchhhhccc-cCeeeccccccccCCCCCCCCC-CccEEEcccccCCcCCchhHH-hcccccceeeeccCCC
Q 015481 174 IRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNS-PVSVLVLANNNFDSCLPPSLT-KMAGTLNEIILANAKL 250 (406)
Q Consensus 174 Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~p~~l~-~l~~~L~~L~l~~n~l 250 (406)
+++|.+++..+.. ++ |++|++++|++++..+..+... .|++|++++|.+++..+..+. .+. +|++|++++|++
T Consensus 106 l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~-~L~~L~L~~N~l 181 (317)
T 3o53_A 106 AANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD-TLEHLNLQYNFI 181 (317)
T ss_dssp CCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTT-TCCEEECTTSCC
T ss_pred CCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccC-cCCEEECCCCcC
Confidence 9999998544332 34 9999999999997767666654 499999999999987777665 456 999999999999
Q ss_pred cccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCC-cCCC--
Q 015481 251 KGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFC-TEPL-- 327 (406)
Q Consensus 251 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~~-- 327 (406)
++. + ....+++|++|+|++|+++ .+|..+..+++|++|+|++|+|+ .+|..+..+++|+.|++++|.+. +.++
T Consensus 182 ~~~-~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 257 (317)
T 3o53_A 182 YDV-K-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (317)
T ss_dssp CEE-E-CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHH
T ss_pred ccc-c-cccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHH
Confidence 885 3 3345899999999999999 56666999999999999999999 68888999999999999999998 4333
Q ss_pred --cCCCCCeeeCCC
Q 015481 328 --ACLKLKVKDDRQ 339 (406)
Q Consensus 328 --~~~~L~~L~l~~ 339 (406)
.+++|+.+++++
T Consensus 258 ~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 258 FSKNQRVQTVAKQT 271 (317)
T ss_dssp HHTCHHHHHHHHHH
T ss_pred HhccccceEEECCC
Confidence 455677777763
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=4.9e-26 Score=227.52 Aligned_cols=230 Identities=20% Similarity=0.207 Sum_probs=194.1
Q ss_pred CCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEE
Q 015481 94 CLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLD 173 (406)
Q Consensus 94 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 173 (406)
+++|+.|+|++|.+++..|..|..+++|++|+|++|.+++..| |+.+++|++|+|++|.+++..+ .++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 4589999999999998888899999999999999999997655 8999999999999999985432 38999999
Q ss_pred eecCcCCCCCchhhhccccCeeeccccccccCCCCCCCCC-CccEEEcccccCCcCCchhHH-hcccccceeeeccCCCc
Q 015481 174 IRFNQFEGEIPSAVFDLKLDALFLNNNKFTSSLPNNIGNS-PVSVLVLANNNFDSCLPPSLT-KMAGTLNEIILANAKLK 251 (406)
Q Consensus 174 Ls~N~l~~~~p~~~~~l~L~~L~L~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~p~~l~-~l~~~L~~L~l~~n~l~ 251 (406)
+++|.+++..+..+ ..|+.|++++|.+++..|..++.. .|++|++++|.+++..|..+. .+. +|++|++++|.++
T Consensus 106 L~~N~l~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~-~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD-TLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEECCC--SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTT-TCCEEECTTSCCC
T ss_pred CcCCcCCCCCcccc--CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCC-cccEEecCCCccc
Confidence 99999996544322 239999999999998878777654 499999999999998888876 566 9999999999999
Q ss_pred ccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCC-cCCC---
Q 015481 252 GCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFC-TEPL--- 327 (406)
Q Consensus 252 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~~--- 327 (406)
+. + .+..+++|++|+|++|.+++ +|..+..+++|+.|+|++|.|+ .+|..+..+++|+.|++++|.+. +.++
T Consensus 183 ~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 183 DV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp EE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred cc-c-ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 85 2 34469999999999999995 5556999999999999999999 58888999999999999999998 3332
Q ss_pred -cCCCCCeeeC
Q 015481 328 -ACLKLKVKDD 337 (406)
Q Consensus 328 -~~~~L~~L~l 337 (406)
.++.|+.+++
T Consensus 259 ~~l~~L~~l~~ 269 (487)
T 3oja_A 259 SKNQRVQTVAK 269 (487)
T ss_dssp TTCHHHHHHHH
T ss_pred HhCCCCcEEec
Confidence 3344555554
No 65
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=7.3e-25 Score=217.21 Aligned_cols=248 Identities=16% Similarity=0.134 Sum_probs=155.4
Q ss_pred CCCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEE
Q 015481 93 DCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFL 172 (406)
Q Consensus 93 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 172 (406)
.+++++.|++++|++++. | ++.+++|++|++++|.+++. + ++++++|++|++++|++++ ++ +..+++|++|
T Consensus 62 ~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L 132 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYL 132 (457)
T ss_dssp GCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEE
T ss_pred ccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEE
Confidence 566888888888888764 3 77888888888888888853 3 7788888888888888875 33 7778888888
Q ss_pred EeecCcCCCCCchhhhccc-cCeeeccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCc
Q 015481 173 DIRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLK 251 (406)
Q Consensus 173 ~Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~ 251 (406)
++++|.+++ ++ +..++ |++|++++|...+.++ ......|++|++++|++++ +| +..+. +|++|++++|+++
T Consensus 133 ~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~n~l~~-l~--l~~l~-~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 133 NCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNKITE-LD--VSQNK-LLNRLNCDTNNIT 204 (457)
T ss_dssp ECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEECCSSCCCC-CC--CTTCT-TCCEEECCSSCCS
T ss_pred ECCCCccce-ec--cccCCcCCEEECCCCCcccccc-cccCCcCCEEECCCCccce-ec--cccCC-CCCEEECcCCcCC
Confidence 888888874 33 44454 7777777775444441 1122336666666666665 33 44444 6666666666665
Q ss_pred ccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhh-------------------------
Q 015481 252 GCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSI------------------------- 306 (406)
Q Consensus 252 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l------------------------- 306 (406)
+. .++.+++|++|++++|++++ +| +..+++|++|++++|++++..+..+
T Consensus 205 ~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~ 278 (457)
T 3bz5_A 205 KL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLI 278 (457)
T ss_dssp CC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCC
T ss_pred ee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCC
Confidence 53 25556666666666666664 44 5555666666666666654332222
Q ss_pred ----cCCCCCCEEEeeCCcCCcCCC------------cCCCCCeeeCCCCCCCCCCCC-CCcccccccccCCCC
Q 015481 307 ----CCLPKLENFTYSYNFFCTEPL------------ACLKLKVKDDRQNCIPNRPFQ-RSPMECKTFYSHPVD 363 (406)
Q Consensus 307 ----~~l~~L~~L~Ls~N~l~~~~~------------~~~~L~~L~l~~N~l~~~p~~-~~~~~~~~~~~np~~ 363 (406)
+.+++|+.|++++|.+.+.+| .+++|+.|++++|+|++++.. .+.++...+.+|.+.
T Consensus 279 ~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 279 YFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp EEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCSEEECCSSCCC
T ss_pred cccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccccccCCcCcEEECCCCCCC
Confidence 334556666666665433221 345677778888888777532 234444566666653
No 66
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=1.5e-24 Score=214.75 Aligned_cols=54 Identities=17% Similarity=0.082 Sum_probs=29.4
Q ss_pred CCCEEEeeCCcCCcCCCcCCCCCeeeCCCCCCCCCCCCCCcccccccccCCCCC
Q 015481 311 KLENFTYSYNFFCTEPLACLKLKVKDDRQNCIPNRPFQRSPMECKTFYSHPVDC 364 (406)
Q Consensus 311 ~L~~L~Ls~N~l~~~~~~~~~L~~L~l~~N~l~~~p~~~~~~~~~~~~~np~~C 364 (406)
+|++|++++|++++++..+.+|+.|++++|.++.+|.....++...+.+|++..
T Consensus 318 ~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N~l~~lp~~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 318 SLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp TCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS
T ss_pred cCCEEECCCCccccccccCCcCCEEECCCCccccccchhhhccEEECCCCCCCc
Confidence 566666666666655445555666666666666555433334444445554433
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.5e-24 Score=200.60 Aligned_cols=186 Identities=16% Similarity=0.142 Sum_probs=152.5
Q ss_pred CCCCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcE
Q 015481 92 PDCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKF 171 (406)
Q Consensus 92 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 171 (406)
..+++++.|++++|.+.+..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 128 (276)
T 2z62_A 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128 (276)
T ss_dssp TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred ccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCE
Confidence 36779999999999999888888999999999999999999888888999999999999999999777767999999999
Q ss_pred EEeecCcCCC-CCchhhhccc-cCeeeccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccc----eeee
Q 015481 172 LDIRFNQFEG-EIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLN----EIIL 245 (406)
Q Consensus 172 L~Ls~N~l~~-~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~----~L~l 245 (406)
|++++|.+++ .+|..+..++ |++|++++|++++. .+..+..+. +|+ +|++
T Consensus 129 L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~-----------------------~~~~~~~l~-~L~~l~l~L~l 184 (276)
T 2z62_A 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----------------------YCTDLRVLH-QMPLLNLSLDL 184 (276)
T ss_dssp EECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE-----------------------CGGGGHHHH-TCTTCCEEEEC
T ss_pred EECcCCccceecCchhhccCCCCCEEECCCCCCCcC-----------------------CHHHhhhhh-hccccceeeec
Confidence 9999999985 3577777766 77777777766532 334444454 555 7889
Q ss_pred ccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccC
Q 015481 246 ANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAI 302 (406)
Q Consensus 246 ~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 302 (406)
++|++++..+..+ ...+|++|+|++|++++..+..+..+++|++|+|++|.+.+..
T Consensus 185 s~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 185 SLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred CCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 9999887554444 3458999999999999665666788999999999999998654
No 68
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=1.3e-25 Score=216.05 Aligned_cols=247 Identities=17% Similarity=0.164 Sum_probs=189.9
Q ss_pred EEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCC----chhhCCc-CCceEecccccccccCchhhcCC-----CC
Q 015481 99 GIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIP----DSFRNMQ-LLFELDVSNNQFSGCFPSVVLCL-----PS 168 (406)
Q Consensus 99 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l-----~~ 168 (406)
.++++.|++++.+|..+...++|++|++++|.+++..+ ..|.+++ +|++|+|++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 36788899998888877777779999999999986665 6777888 89999999999987777777664 89
Q ss_pred CcEEEeecCcCCCCCchhhhcc-----c-cCeeeccccccccCCCCCCC----C--CCccEEEcccccCCcCCchhH---
Q 015481 169 LKFLDIRFNQFEGEIPSAVFDL-----K-LDALFLNNNKFTSSLPNNIG----N--SPVSVLVLANNNFDSCLPPSL--- 233 (406)
Q Consensus 169 L~~L~Ls~N~l~~~~p~~~~~l-----~-L~~L~L~~n~l~~~~~~~~~----~--~~L~~L~l~~n~l~~~~p~~l--- 233 (406)
|++|+|++|.+++..+..+... . |++|++++|++++..+..+. . ..|++|++++|.+++.....+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999999987666655443 4 99999999999865554332 2 369999999999986544443
Q ss_pred -HhcccccceeeeccCCCcccChhhhc----cC-CCCcEEEeecCCCCCc----cchhhcC-CCCCCEEeCcCCcccccC
Q 015481 234 -TKMAGTLNEIILANAKLKGCLLKDIG----LL-NQVTVFDVSFNNLVGS----LPESMGN-MKSLEQLNVAHNNLSGAI 302 (406)
Q Consensus 234 -~~l~~~L~~L~l~~n~l~~~~~~~l~----~l-~~L~~L~Ls~N~l~~~----~p~~l~~-l~~L~~L~Ls~N~l~~~~ 302 (406)
.....+|++|++++|++++..+..+. .+ ++|++|+|++|.+++. ++..+.. .++|++|+|++|.|++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 33333899999999999887665444 44 5999999999999853 5556655 459999999999998654
Q ss_pred c----hhhcCCCCCCEEEeeCCcCCcCC-----------CcCCCCCeeeCCCCCCCCC
Q 015481 303 P----NSICCLPKLENFTYSYNFFCTEP-----------LACLKLKVKDDRQNCIPNR 345 (406)
Q Consensus 303 p----~~l~~l~~L~~L~Ls~N~l~~~~-----------~~~~~L~~L~l~~N~l~~~ 345 (406)
+ ..+..+++|+.|++++|.+.++. +.+.+|+.||+++|.+...
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 4 33467899999999999855433 3456788999999998755
No 69
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=4.7e-24 Score=198.89 Aligned_cols=200 Identities=20% Similarity=0.226 Sum_probs=137.1
Q ss_pred CCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEE
Q 015481 94 CLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLD 173 (406)
Q Consensus 94 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 173 (406)
+.+++++++++++++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..+ ...+++|++|+
T Consensus 9 l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 83 (290)
T 1p9a_G 9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLD 83 (290)
T ss_dssp STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEE
T ss_pred cCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEE
Confidence 446777777777776 4555443 577777777777776666677777777777777777774322 25677777777
Q ss_pred eecCcCCCCCchhhhccc-cCeeeccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCcc
Q 015481 174 IRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKG 252 (406)
Q Consensus 174 Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~ 252 (406)
+++|.++ .+|..+..++ |++|++++|+++ +..+..+..+. +|++|++++|++++
T Consensus 84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~-----------------------~l~~~~~~~l~-~L~~L~L~~N~l~~ 138 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-----------------------SLPLGALRGLG-ELQELYLKGNELKT 138 (290)
T ss_dssp CCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-----------------------CCCSSTTTTCT-TCCEEECTTSCCCC
T ss_pred CCCCcCC-cCchhhccCCCCCEEECCCCcCc-----------------------ccCHHHHcCCC-CCCEEECCCCCCCc
Confidence 7777776 5555544444 555555555554 32333444555 77777777777777
Q ss_pred cChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCc
Q 015481 253 CLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCT 324 (406)
Q Consensus 253 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 324 (406)
..+..+..+++|+.|+|++|++++..+..+..+++|++|+|++|+|+ .+|..+..+++|+.++|++|.+..
T Consensus 139 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 66666777788888888888887444455677788888888888887 677777777788888888887654
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=1.1e-23 Score=215.32 Aligned_cols=234 Identities=24% Similarity=0.287 Sum_probs=133.1
Q ss_pred cEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEee
Q 015481 96 TVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIR 175 (406)
Q Consensus 96 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 175 (406)
+++.|++++|+++ .+|. .+++|++|++++|.|+ .+|. .+++|++|++++|.+++ +|. .+++|+.|+++
T Consensus 62 ~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 62 HITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIF 129 (622)
T ss_dssp TCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECC
T ss_pred CCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECC
Confidence 4445555555444 2332 3344555555555544 2333 34445555555555542 222 33445555555
Q ss_pred cCcCCCCCchhhhccccCeeeccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccCh
Q 015481 176 FNQFEGEIPSAVFDLKLDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLL 255 (406)
Q Consensus 176 ~N~l~~~~p~~~~~l~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~ 255 (406)
+|+++ .+|..+ ..|++|++++|++++ +|..+ ..|+.|++++|.+++ +| ..+. +|+.|++++|++++ +|
T Consensus 130 ~N~l~-~lp~~l--~~L~~L~Ls~N~l~~-l~~~~--~~L~~L~L~~N~l~~-l~---~~~~-~L~~L~Ls~N~l~~-l~ 197 (622)
T 3g06_A 130 GNQLT-SLPVLP--PGLQELSVSDNQLAS-LPALP--SELCKLWAYNNQLTS-LP---MLPS-GLQELSVSDNQLAS-LP 197 (622)
T ss_dssp SSCCS-CCCCCC--TTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCSC-CC---CCCT-TCCEEECCSSCCSC-CC
T ss_pred CCCCC-cCCCCC--CCCCEEECcCCcCCC-cCCcc--CCCCEEECCCCCCCC-Cc---ccCC-CCcEEECCCCCCCC-CC
Confidence 55554 344321 125555555555542 22211 235555555555554 33 1123 67777777777665 33
Q ss_pred hhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCCcCCCCCee
Q 015481 256 KDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPLACLKLKVK 335 (406)
Q Consensus 256 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~L~~L 335 (406)
. .+++|+.|++++|.++ .+|. .+++|++|+|++|+|+ .+| ..+++|+.|++++|.|++++..+.+|+.|
T Consensus 198 ~---~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L 266 (622)
T 3g06_A 198 T---LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLTSLPMLPSGLLSL 266 (622)
T ss_dssp C---CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCCCCTTCCEE
T ss_pred C---ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCCcCCcccccCcEE
Confidence 2 2356677777777766 4443 2367888888888888 466 45678888888888888877777788888
Q ss_pred eCCCCCCCCCCCC---CCcccccccccCCCCC
Q 015481 336 DDRQNCIPNRPFQ---RSPMECKTFYSHPVDC 364 (406)
Q Consensus 336 ~l~~N~l~~~p~~---~~~~~~~~~~~np~~C 364 (406)
++++|.|+.+|.. .+.+....+.+|++..
T Consensus 267 ~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 267 SVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp ECCSSCCCSCCGGGGGSCTTCEEECCSCCCCH
T ss_pred eCCCCCCCcCCHHHhhccccCEEEecCCCCCC
Confidence 8888888888732 3444555677777643
No 71
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=5.1e-24 Score=194.38 Aligned_cols=192 Identities=19% Similarity=0.219 Sum_probs=143.8
Q ss_pred CCCCcceeecCCCCCCCCCCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccc
Q 015481 76 NVCNYTGVYCAPAPDDPDCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQF 155 (406)
Q Consensus 76 ~~c~w~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 155 (406)
++|.|.|.+|.. ..++++++++.++ .+|..+. ..+++|++++|.+++..+..|.++++|++|+|++|.+
T Consensus 3 ~Cp~~~gC~C~~--------~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 71 (251)
T 3m19_A 3 TCETVTGCTCNE--------GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL 71 (251)
T ss_dssp -CHHHHSSEEEG--------GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred cCCCCCceEcCC--------CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcC
Confidence 356899999953 5678999999988 5676665 6899999999999988888899999999999999999
Q ss_pred cccCchhhcCCCCCcEEEeecCcCCCCCchhhhccccCeeeccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHh
Q 015481 156 SGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLKLDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTK 235 (406)
Q Consensus 156 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~ 235 (406)
++..+..|..+++|++|+|++|.+++..+..+..
T Consensus 72 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---------------------------------------------- 105 (251)
T 3m19_A 72 QTLSAGVFDDLTELGTLGLANNQLASLPLGVFDH---------------------------------------------- 105 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT----------------------------------------------
T ss_pred CccCHhHhccCCcCCEEECCCCcccccChhHhcc----------------------------------------------
Confidence 9888888889999999999999887332222222
Q ss_pred cccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEE
Q 015481 236 MAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENF 315 (406)
Q Consensus 236 l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 315 (406)
+. +|++|++++|++++..+..+..+++|++|+|++|++++..+..+..+++|++|+|++|++++..+..+..+++|+.|
T Consensus 106 l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 184 (251)
T 3m19_A 106 LT-QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184 (251)
T ss_dssp CT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred cC-CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 22 56666666666665445556667777777777777775555567777777777777777776555667777777777
Q ss_pred EeeCCcCCcC
Q 015481 316 TYSYNFFCTE 325 (406)
Q Consensus 316 ~Ls~N~l~~~ 325 (406)
++++|.+++.
T Consensus 185 ~l~~N~~~c~ 194 (251)
T 3m19_A 185 TLFGNQFDCS 194 (251)
T ss_dssp ECCSCCBCTT
T ss_pred EeeCCceeCC
Confidence 7777777665
No 72
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=2.8e-24 Score=202.33 Aligned_cols=221 Identities=16% Similarity=0.125 Sum_probs=166.0
Q ss_pred CCCCEEEcCCCcCCccCCc---hhhCCcCCceEecccccccccCchhh--cCCCCCcEEEeecCcCCCCCc----hhhhc
Q 015481 119 QDLALFHINSNRFCGTIPD---SFRNMQLLFELDVSNNQFSGCFPSVV--LCLPSLKFLDIRFNQFEGEIP----SAVFD 189 (406)
Q Consensus 119 ~~L~~L~L~~n~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~~p----~~~~~ 189 (406)
..++.+.+.++.++...-. .+..+++|++|++++|.+++..|..+ ..+++|++|+|++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4577788887776532111 12234668888888888888888777 788888888888888886544 22334
Q ss_pred cc-cCeeeccccccccCCCCCCCCCC-ccEEEcccccCCcC--Cc--hhHHhcccccceeeeccCCCcccChh----hhc
Q 015481 190 LK-LDALFLNNNKFTSSLPNNIGNSP-VSVLVLANNNFDSC--LP--PSLTKMAGTLNEIILANAKLKGCLLK----DIG 259 (406)
Q Consensus 190 l~-L~~L~L~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~--~p--~~l~~l~~~L~~L~l~~n~l~~~~~~----~l~ 259 (406)
++ |++|++++|++.+..+..+...+ |++|++++|++.+. ++ ..+..+. +|++|++++|+++. ++. .+.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~-l~~~~~~l~~ 221 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP-AIQNLALRNTGMET-PTGVCAALAA 221 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC-CCCSCBCCSSCCCC-HHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCC-CCCEEECCCCCCCc-hHHHHHHHHh
Confidence 54 88888888888877777766544 88899988887642 11 1124555 89999999999975 232 357
Q ss_pred cCCCCcEEEeecCCCCCccchhhcCC---CCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC--cCCCCCe
Q 015481 260 LLNQVTVFDVSFNNLVGSLPESMGNM---KSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL--ACLKLKV 334 (406)
Q Consensus 260 ~l~~L~~L~Ls~N~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~L~~ 334 (406)
.+++|++|+|++|++++..|..+..+ ++|++|+|++|+|+ .+|..+. ++|++|+|++|+|++.+. .+++|+.
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~ 298 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDN 298 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCchhhhCCCccE
Confidence 78999999999999997778777776 69999999999999 7787764 799999999999998532 6778999
Q ss_pred eeCCCCCCCC
Q 015481 335 KDDRQNCIPN 344 (406)
Q Consensus 335 L~l~~N~l~~ 344 (406)
|++++|+|+.
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 9999998864
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=4.7e-24 Score=197.02 Aligned_cols=199 Identities=19% Similarity=0.173 Sum_probs=130.7
Q ss_pred CcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEe
Q 015481 95 LTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDI 174 (406)
Q Consensus 95 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 174 (406)
.+++.|+++++.+.. + +.+..+++|++|++++|.+++ + ..+.++++|++|++++|.+++..+..|..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 456666776666653 2 236666677777777776664 2 35666666777777777666555555666666777776
Q ss_pred ecCcCCCCCchhhhccc-cCeeeccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCccc
Q 015481 175 RFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGC 253 (406)
Q Consensus 175 s~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~ 253 (406)
++|.+++..+..+..++ |++|++++|+++ +..+..+..+. +|++|++++|++++.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-----------------------~~~~~~~~~l~-~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-----------------------SLPKGVFDKLT-NLTELDLSYNQLQSL 172 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCC-----------------------CCCTTTTTTCT-TCCEEECCSSCCCCC
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccC-----------------------ccCHHHhccCc-cCCEEECCCCCcCcc
Confidence 66666643333344444 555555555544 33333344455 788888888887776
Q ss_pred ChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCCc
Q 015481 254 LLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPLA 328 (406)
Q Consensus 254 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~ 328 (406)
.+..+..+++|++|+|++|++++..+..+..+++|++|++++|.+.+. +++|+.+++..|.++|.+|.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBC
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccC
Confidence 666677788888888888888876666677888888888888877643 44677788888888877663
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=4.6e-23 Score=190.10 Aligned_cols=198 Identities=20% Similarity=0.277 Sum_probs=160.6
Q ss_pred CCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEeecCcCCCCCchh-hhccc-cCeeec
Q 015481 120 DLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSA-VFDLK-LDALFL 197 (406)
Q Consensus 120 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~-L~~L~L 197 (406)
..+.+++++++++ .+|..+. ++|++|++++|++++..+..|..+++|++|++++|.++ .++.. +..++ |++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEEC
Confidence 5788999999998 5776554 57999999999998777778889999999999999988 45443 34444 666666
Q ss_pred cccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCc
Q 015481 198 NNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGS 277 (406)
Q Consensus 198 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 277 (406)
++|+++ +..+..+..+. +|++|++++|++++..+..+..+++|++|+|++|++++.
T Consensus 93 ~~n~l~-----------------------~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 148 (270)
T 2o6q_A 93 TDNKLQ-----------------------ALPIGVFDQLV-NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL 148 (270)
T ss_dssp CSSCCC-----------------------CCCTTTTTTCS-SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCcCC-----------------------cCCHhHccccc-CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc
Confidence 666654 32223344555 899999999999998888899999999999999999966
Q ss_pred cchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC----cCCCCCeeeCCCCCCCCC
Q 015481 278 LPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL----ACLKLKVKDDRQNCIPNR 345 (406)
Q Consensus 278 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~L~~L~l~~N~l~~~ 345 (406)
.+..+..+++|++|+|++|++++..+..|..+++|++|++++|.+++.++ .+.+|+.|++++|.+...
T Consensus 149 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 66668999999999999999997666678999999999999999998876 366899999999987544
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=2.5e-23 Score=193.99 Aligned_cols=179 Identities=21% Similarity=0.221 Sum_probs=148.5
Q ss_pred CCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEE
Q 015481 94 CLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLD 173 (406)
Q Consensus 94 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 173 (406)
..+++.|+|++|.+++..+..|..+++|++|++++|.+++. +. .+.+++|++|++++|+++ .+|..+..+++|++|+
T Consensus 30 ~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD 106 (290)
T ss_dssp CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEE
Confidence 36899999999999988888999999999999999999954 33 378999999999999998 6788889999999999
Q ss_pred eecCcCCCCCchhhhccc-cCeeeccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCcc
Q 015481 174 IRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKG 252 (406)
Q Consensus 174 Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~ 252 (406)
+++|++++..+..+..+. |++|++++|++++..+. .+..+. +|++|++++|++++
T Consensus 107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~-----------------------~~~~l~-~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG-----------------------LLTPTP-KLEKLSLANNNLTE 162 (290)
T ss_dssp CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT-----------------------TTTTCT-TCCEEECTTSCCSC
T ss_pred CCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChh-----------------------hccccc-CCCEEECCCCcCCc
Confidence 999999955556666666 77777777777633222 233444 88888888888887
Q ss_pred cChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccc
Q 015481 253 CLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSG 300 (406)
Q Consensus 253 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 300 (406)
..+..+..+++|++|+|++|+++ .+|..+..+.+|+.|+|++|.+..
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 66667788999999999999998 788888888899999999998863
No 76
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=2e-25 Score=216.60 Aligned_cols=241 Identities=17% Similarity=0.230 Sum_probs=123.6
Q ss_pred cEEEEECCCCCcccc----CcccccCCCCCCEEEcCCC---cCCccCCchh-------hCCcCCceEecccccccc----
Q 015481 96 TVAGIDLNQANIAGT----LPEKLGLLQDLALFHINSN---RFCGTIPDSF-------RNMQLLFELDVSNNQFSG---- 157 (406)
Q Consensus 96 ~l~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n---~l~~~~p~~~-------~~l~~L~~L~Ls~N~l~~---- 157 (406)
+++.|+|++|.+.+. ++..+..+++|++|+|++| ++++.+|..+ ..+++|++|+|++|.+++
T Consensus 33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 112 (386)
T 2ca6_A 33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE 112 (386)
T ss_dssp CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence 455555555555443 2223445555555555553 2333334333 345555555555555554
Q ss_pred cCchhhcCCCCCcEEEeecCcCCCCCchhhhccccCeeeccccccccCCCCCCCCCCccEEEcccccCC-cCCc---hhH
Q 015481 158 CFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLKLDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFD-SCLP---PSL 233 (406)
Q Consensus 158 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~-~~~p---~~l 233 (406)
.++..+..+++|++|+|++|.+++..+..+... +.. +..+.+.+.. .+|++|++++|.++ +.++ ..+
T Consensus 113 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~--l~~~~~~~~~------~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA-LQE--LAVNKKAKNA------PPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH-HHH--HHHHHHHHTC------CCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHH-HHH--HhhhhhcccC------CCCcEEECCCCCCCcHHHHHHHHHH
Confidence 244445555555555555555542222222111 000 0000000000 24556666666554 2233 234
Q ss_pred HhcccccceeeeccCCCcc-----cChhhhccCCCCcEEEeecCCCC----CccchhhcCCCCCCEEeCcCCccccc---
Q 015481 234 TKMAGTLNEIILANAKLKG-----CLLKDIGLLNQVTVFDVSFNNLV----GSLPESMGNMKSLEQLNVAHNNLSGA--- 301 (406)
Q Consensus 234 ~~l~~~L~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~--- 301 (406)
..+. +|++|++++|+++. ..+..+..+++|++|+|++|.++ +.+|..+..+++|++|+|++|.|++.
T Consensus 184 ~~~~-~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 184 QSHR-LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHCT-TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HhCC-CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 4455 67777777776652 12335566667777777777764 45666666667777777777766644
Q ss_pred -Cchhhc--CCCCCCEEEeeCCcCCc-----CCC----cCCCCCeeeCCCCCCCCCC
Q 015481 302 -IPNSIC--CLPKLENFTYSYNFFCT-----EPL----ACLKLKVKDDRQNCIPNRP 346 (406)
Q Consensus 302 -~p~~l~--~l~~L~~L~Ls~N~l~~-----~~~----~~~~L~~L~l~~N~l~~~p 346 (406)
++..+. .+++|+.|+|++|.+++ ++. .+++|+.|++++|.+++..
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 444552 36667777777777666 222 2466777777777666543
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=3e-24 Score=198.36 Aligned_cols=216 Identities=17% Similarity=0.198 Sum_probs=159.5
Q ss_pred EEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEeec
Q 015481 97 VAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRF 176 (406)
Q Consensus 97 l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 176 (406)
+..+++..+.+.... .+..+++|+.|++++|.++ .++ .+..+++|++|++++|.+++. ..+..+++|++|++++
T Consensus 21 l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 21 TIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTT
T ss_pred HHHHHhcCccccccc--ccccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCC
Confidence 334445555444332 2456677777777777776 233 466777777777777777642 3566777777777777
Q ss_pred CcCCCCCchhhhccc-cCeeeccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccCh
Q 015481 177 NQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLL 255 (406)
Q Consensus 177 N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~ 255 (406)
|.+++..+..+..++ |++|++++|+ +++..+..+..+. +|++|++++|++++..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~-----------------------l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~ 150 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQ-----------------------LQSLPDGVFDKLT-NLTYLNLAHNQLQSLPK 150 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSC-----------------------CCCCCTTTTTTCT-TCCEEECCSSCCCCCCT
T ss_pred CccCccChhHhcCCcCCCEEECCCCc-----------------------CCccCHHHhccCC-CCCEEECCCCccCccCH
Confidence 777644333344444 5555555554 4443344455666 99999999999998777
Q ss_pred hhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCCcCCCCCee
Q 015481 256 KDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPLACLKLKVK 335 (406)
Q Consensus 256 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~L~~L 335 (406)
..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+. ++.|+.+
T Consensus 151 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~---~~~l~~l 227 (272)
T 3rfs_A 151 GVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT---CPGIRYL 227 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC---TTTTHHH
T ss_pred HHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc---CcHHHHH
Confidence 7889999999999999999977777789999999999999999987777789999999999999999875 5578899
Q ss_pred eCCCCCCCCC
Q 015481 336 DDRQNCIPNR 345 (406)
Q Consensus 336 ~l~~N~l~~~ 345 (406)
++..|.+++.
T Consensus 228 ~~~~n~~~g~ 237 (272)
T 3rfs_A 228 SEWINKHSGV 237 (272)
T ss_dssp HHHHHHTGGG
T ss_pred HHHHHhCCCc
Confidence 9999988764
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=5e-24 Score=200.57 Aligned_cols=224 Identities=19% Similarity=0.205 Sum_probs=179.8
Q ss_pred CcEEEEECCCCCccccC-cc--cccCCCCCCEEEcCCCcCCccCCchh--hCCcCCceEecccccccccCc----hhhcC
Q 015481 95 LTVAGIDLNQANIAGTL-PE--KLGLLQDLALFHINSNRFCGTIPDSF--RNMQLLFELDVSNNQFSGCFP----SVVLC 165 (406)
Q Consensus 95 ~~l~~L~L~~n~l~~~~-p~--~l~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p----~~l~~ 165 (406)
.+++.+.+.++.+.... .. .+..+++|++|++++|.+++..|..+ .++++|++|++++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 35788888888775321 11 12245679999999999999999888 899999999999999997555 34567
Q ss_pred CCCCcEEEeecCcCCCCCchhhhccc-cCeeeccccccccC--C--CCCCCC-CCccEEEcccccCCcCCchh----HHh
Q 015481 166 LPSLKFLDIRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSS--L--PNNIGN-SPVSVLVLANNNFDSCLPPS----LTK 235 (406)
Q Consensus 166 l~~L~~L~Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~--~--~~~~~~-~~L~~L~l~~n~l~~~~p~~----l~~ 235 (406)
+++|++|++++|.+.+..+..+..++ |++|++++|++.+. + +..+.. .+|++|++++|.++. ++.. +..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 99999999999999977777888887 99999999998652 2 122233 349999999999974 3332 345
Q ss_pred cccccceeeeccCCCcccChhhhccC---CCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCC
Q 015481 236 MAGTLNEIILANAKLKGCLLKDIGLL---NQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKL 312 (406)
Q Consensus 236 l~~~L~~L~l~~n~l~~~~~~~l~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 312 (406)
+. +|++|++++|++++..|..+..+ ++|++|+|++|+++ .+|..+. ++|++|+|++|+|++ +|. +..+++|
T Consensus 223 l~-~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~L 296 (310)
T 4glp_A 223 GV-QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELPEV 296 (310)
T ss_dssp TC-CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCCCC
T ss_pred CC-CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhhCCCc
Confidence 56 99999999999999878777766 69999999999999 7787764 799999999999995 444 6788999
Q ss_pred CEEEeeCCcCCcC
Q 015481 313 ENFTYSYNFFCTE 325 (406)
Q Consensus 313 ~~L~Ls~N~l~~~ 325 (406)
+.|++++|.|+..
T Consensus 297 ~~L~L~~N~l~~~ 309 (310)
T 4glp_A 297 DNLTLDGNPFLVP 309 (310)
T ss_dssp SCEECSSTTTSCC
T ss_pred cEEECcCCCCCCC
Confidence 9999999999753
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=4.5e-25 Score=209.72 Aligned_cols=257 Identities=14% Similarity=0.111 Sum_probs=196.7
Q ss_pred CCCcceeecCCCCCCCCCCcEEEEECCCCCccccCcccccCC--CCCCEEEcCCCcCCccCCchhhCCcCCceEeccccc
Q 015481 77 VCNYTGVYCAPAPDDPDCLTVAGIDLNQANIAGTLPEKLGLL--QDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQ 154 (406)
Q Consensus 77 ~c~w~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 154 (406)
+..|.++.|+. ..++.++++++.+. +..+..+ .+++.|++++|.+.+..+. +..+++|++|++++|.
T Consensus 36 c~~W~~~~~~~-------~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~ 104 (336)
T 2ast_B 36 CKRWYRLASDE-------SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSV 104 (336)
T ss_dssp CHHHHHHHTCS-------TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCE
T ss_pred HHHHHHHhcCc-------hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCC
Confidence 34699988753 25788999998876 3456666 8899999999999976665 5678999999999999
Q ss_pred cccc-CchhhcCCCCCcEEEeecCcCCCCCchhhhccc-cCeeecccc-ccccC-CCCCCCC-CCccEEEcccc-cCCcC
Q 015481 155 FSGC-FPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLK-LDALFLNNN-KFTSS-LPNNIGN-SPVSVLVLANN-NFDSC 228 (406)
Q Consensus 155 l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-L~~L~L~~n-~l~~~-~~~~~~~-~~L~~L~l~~n-~l~~~ 228 (406)
+++. ++..+..+++|++|++++|.+++..+..+..++ |++|++++| .+++. ++..+.. .+|++|++++| .+++.
T Consensus 105 l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 184 (336)
T 2ast_B 105 IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK 184 (336)
T ss_dssp ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH
T ss_pred cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH
Confidence 9865 778889999999999999999877888888777 999999999 56642 3443333 44899999998 88754
Q ss_pred -CchhHHhcccccceeeeccC--CCc-ccChhhhccCCCCcEEEeecCC-CCCccchhhcCCCCCCEEeCcCCc-ccccC
Q 015481 229 -LPPSLTKMAGTLNEIILANA--KLK-GCLLKDIGLLNQVTVFDVSFNN-LVGSLPESMGNMKSLEQLNVAHNN-LSGAI 302 (406)
Q Consensus 229 -~p~~l~~l~~~L~~L~l~~n--~l~-~~~~~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~ 302 (406)
++..+..++.+|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +....
T Consensus 185 ~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 264 (336)
T 2ast_B 185 HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET 264 (336)
T ss_dssp HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG
T ss_pred HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH
Confidence 45555555448999999998 455 4466777889999999999998 776777788889999999999985 33232
Q ss_pred chhhcCCCCCCEEEeeCCcCCcCCC-cC-CCCCeeeCCCCCCCCC
Q 015481 303 PNSICCLPKLENFTYSYNFFCTEPL-AC-LKLKVKDDRQNCIPNR 345 (406)
Q Consensus 303 p~~l~~l~~L~~L~Ls~N~l~~~~~-~~-~~L~~L~l~~N~l~~~ 345 (406)
...+..+++|+.|++++| ++...- .+ ..++.|++++|.+++.
T Consensus 265 ~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 265 LLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSHFTTI 308 (336)
T ss_dssp GGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCCSCCT
T ss_pred HHHHhcCCCCCEEeccCc-cCHHHHHHHHhhCcceEEecccCccc
Confidence 335778899999999988 443221 22 2477788889988876
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=5.3e-25 Score=213.61 Aligned_cols=216 Identities=16% Similarity=0.158 Sum_probs=157.8
Q ss_pred CCCcEEEEECCCC---CccccCcccc-------cCCCCCCEEEcCCCcCCc----cCCchhhCCcCCceEeccccccccc
Q 015481 93 DCLTVAGIDLNQA---NIAGTLPEKL-------GLLQDLALFHINSNRFCG----TIPDSFRNMQLLFELDVSNNQFSGC 158 (406)
Q Consensus 93 ~~~~l~~L~L~~n---~l~~~~p~~l-------~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~ 158 (406)
.+++++.|+|++| .+.+.+|..+ ..+++|++|+|++|.+++ .++..+..+++|++|+|++|.+++.
T Consensus 58 ~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 137 (386)
T 2ca6_A 58 SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ 137 (386)
T ss_dssp TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH
T ss_pred hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHH
Confidence 4678999999996 4556666555 789999999999999997 4777889999999999999999755
Q ss_pred Cchhhc----CC---------CCCcEEEeecCcCC-CCCc---hhhhccc-cCeeeccccccccCCCCCCCCCCccEEEc
Q 015481 159 FPSVVL----CL---------PSLKFLDIRFNQFE-GEIP---SAVFDLK-LDALFLNNNKFTSSLPNNIGNSPVSVLVL 220 (406)
Q Consensus 159 ~p~~l~----~l---------~~L~~L~Ls~N~l~-~~~p---~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~L~~L~l 220 (406)
.+..+. .+ ++|++|++++|.++ +.++ ..+..++ |++|++++|+++..-.
T Consensus 138 ~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~------------- 204 (386)
T 2ca6_A 138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGI------------- 204 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHH-------------
T ss_pred HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHH-------------
Confidence 444343 34 89999999999997 3344 2344444 7777777776641100
Q ss_pred ccccCCcCCchhHHhcccccceeeeccCCCc----ccChhhhccCCCCcEEEeecCCCCCc----cchhhc--CCCCCCE
Q 015481 221 ANNNFDSCLPPSLTKMAGTLNEIILANAKLK----GCLLKDIGLLNQVTVFDVSFNNLVGS----LPESMG--NMKSLEQ 290 (406)
Q Consensus 221 ~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~----~~~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~--~l~~L~~ 290 (406)
....+..+..+. +|++|+|++|.++ ..++..+..+++|++|+|++|.+++. ++..+. .+++|++
T Consensus 205 -----~~l~~~~l~~~~-~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~ 278 (386)
T 2ca6_A 205 -----EHLLLEGLAYCQ-ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT 278 (386)
T ss_dssp -----HHHHHTTGGGCT-TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCE
T ss_pred -----HHHHHHHhhcCC-CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEE
Confidence 001122444555 7888888888875 44677778888888888888888755 456663 3788888
Q ss_pred EeCcCCcccc----cCchhh-cCCCCCCEEEeeCCcCCcCCC
Q 015481 291 LNVAHNNLSG----AIPNSI-CCLPKLENFTYSYNFFCTEPL 327 (406)
Q Consensus 291 L~Ls~N~l~~----~~p~~l-~~l~~L~~L~Ls~N~l~~~~~ 327 (406)
|+|++|.|++ .+|..+ .++++|+.|++++|.+++..+
T Consensus 279 L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 279 LRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp EECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred EECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 8888888886 377776 567888888888888887663
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=3.1e-23 Score=187.71 Aligned_cols=198 Identities=15% Similarity=0.212 Sum_probs=123.1
Q ss_pred cEEEEECCCCCccccCcccccCCCCCCEEEcCCCc-CCccCCchhhCCcCCceEeccc-ccccccCchhhcCCCCCcEEE
Q 015481 96 TVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNR-FCGTIPDSFRNMQLLFELDVSN-NQFSGCFPSVVLCLPSLKFLD 173 (406)
Q Consensus 96 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~ 173 (406)
+++.|++++|++++..+..|.++++|++|++++|+ ++...+..|.++++|++|++++ |++++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666665555556666666666666665 5544444566666666666666 666655555566666666666
Q ss_pred eecCcCCCCCchhhhccc-cCeeeccccccccCCCCCCCCCCccEEEcccc-cCCcCCchhHHhcccccc-eeeeccCCC
Q 015481 174 IRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNSPVSVLVLANN-NFDSCLPPSLTKMAGTLN-EIILANAKL 250 (406)
Q Consensus 174 Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n-~l~~~~p~~l~~l~~~L~-~L~l~~n~l 250 (406)
+++|.++ .+|. +..+. |+ .+++|++++| .+++..+..+..+. +|+ +|++++|++
T Consensus 112 l~~n~l~-~lp~-~~~l~~L~--------------------~L~~L~l~~N~~l~~i~~~~~~~l~-~L~~~L~l~~n~l 168 (239)
T 2xwt_C 112 IFNTGLK-MFPD-LTKVYSTD--------------------IFFILEITDNPYMTSIPVNAFQGLC-NETLTLKLYNNGF 168 (239)
T ss_dssp EEEECCC-SCCC-CTTCCBCC--------------------SEEEEEEESCTTCCEECTTTTTTTB-SSEEEEECCSCCC
T ss_pred CCCCCCc-cccc-cccccccc--------------------cccEEECCCCcchhhcCcccccchh-cceeEEEcCCCCC
Confidence 6666666 3443 33333 33 0115555555 44443333455555 777 788877777
Q ss_pred cccChhhhccCCCCcEEEeecCC-CCCccchhhcCC-CCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCC
Q 015481 251 KGCLLKDIGLLNQVTVFDVSFNN-LVGSLPESMGNM-KSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYN 320 (406)
Q Consensus 251 ~~~~~~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 320 (406)
+...+..+.. ++|+.|+|++|+ +++..+..|..+ ++|++|++++|+++ .+|.. .+++|+.|+++++
T Consensus 169 ~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 169 TSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred cccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence 7533333433 778888888884 775555667777 88888888888887 45544 5777888888765
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=8.8e-23 Score=191.95 Aligned_cols=194 Identities=17% Similarity=0.309 Sum_probs=127.3
Q ss_pred CcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEe
Q 015481 95 LTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDI 174 (406)
Q Consensus 95 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 174 (406)
.+++.|+++++.+.. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++. + .+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEEC
Confidence 356666666666553 23 35556666666666666653 233 56666666666666666532 2 4555666666666
Q ss_pred ecCcCCCCCchhhhccccCeeeccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccC
Q 015481 175 RFNQFEGEIPSAVFDLKLDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCL 254 (406)
Q Consensus 175 s~N~l~~~~p~~~~~l~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~ 254 (406)
++|.++ .++. +..++ .|++|++++|.+++ ++. +..+. +|++|++++|++++..
T Consensus 115 ~~n~l~-~~~~-l~~l~----------------------~L~~L~l~~n~l~~-~~~-l~~l~-~L~~L~l~~n~l~~~~ 167 (308)
T 1h6u_A 115 TSTQIT-DVTP-LAGLS----------------------NLQVLYLDLNQITN-ISP-LAGLT-NLQYLSIGNAQVSDLT 167 (308)
T ss_dssp TTSCCC-CCGG-GTTCT----------------------TCCEEECCSSCCCC-CGG-GGGCT-TCCEEECCSSCCCCCG
T ss_pred CCCCCC-Cchh-hcCCC----------------------CCCEEECCCCccCc-Ccc-ccCCC-CccEEEccCCcCCCCh
Confidence 666665 2332 33333 25555555555544 222 55666 8899999999888743
Q ss_pred hhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC
Q 015481 255 LKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL 327 (406)
Q Consensus 255 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~ 327 (406)
+ +..+++|+.|++++|++++. +. +..+++|++|+|++|++++.. .+..+++|+.|++++|.+++.+.
T Consensus 168 ~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 168 P--LANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp G--GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCCE
T ss_pred h--hcCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCCe
Confidence 3 78889999999999999844 43 788899999999999998444 37888999999999999887554
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=3.4e-23 Score=187.41 Aligned_cols=201 Identities=16% Similarity=0.138 Sum_probs=162.6
Q ss_pred cCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEeccccc-ccccCchhhcCCCCCcEEEeec-CcCCCCCchhh
Q 015481 110 TLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQ-FSGCFPSVVLCLPSLKFLDIRF-NQFEGEIPSAV 187 (406)
Q Consensus 110 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~ 187 (406)
.+|. +. .+|++|++++|++++..+..|+++++|++|++++|. ++...+..|..+++|++|++++ |.+++..+..+
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 4555 33 489999999999997767789999999999999997 8877777899999999999998 99984444455
Q ss_pred hccc-cCeeeccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccc---eeeeccC-CCcccChhhhccCC
Q 015481 188 FDLK-LDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLN---EIILANA-KLKGCLLKDIGLLN 262 (406)
Q Consensus 188 ~~l~-L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~---~L~l~~n-~l~~~~~~~l~~l~ 262 (406)
..++ |++|++++|++++ +| . +..+. +|+ +|++++| ++++..+..|..++
T Consensus 102 ~~l~~L~~L~l~~n~l~~-lp-----------------------~-~~~l~-~L~~L~~L~l~~N~~l~~i~~~~~~~l~ 155 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKM-FP-----------------------D-LTKVY-STDIFFILEITDNPYMTSIPVNAFQGLC 155 (239)
T ss_dssp ECCTTCCEEEEEEECCCS-CC-----------------------C-CTTCC-BCCSEEEEEEESCTTCCEECTTTTTTTB
T ss_pred CCCCCCCEEeCCCCCCcc-cc-----------------------c-ccccc-ccccccEEECCCCcchhhcCcccccchh
Confidence 5555 7777777777653 32 2 33344 666 9999999 99987777899999
Q ss_pred CCc-EEEeecCCCCCccchhhcCCCCCCEEeCcCCc-ccccCchhhcCC-CCCCEEEeeCCcCCcCCCc-CCCCCeeeCC
Q 015481 263 QVT-VFDVSFNNLVGSLPESMGNMKSLEQLNVAHNN-LSGAIPNSICCL-PKLENFTYSYNFFCTEPLA-CLKLKVKDDR 338 (406)
Q Consensus 263 ~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~~~-~~~L~~L~l~ 338 (406)
+|+ +|++++|+++ .+|......++|++|+|++|+ +++..+..|..+ ++|+.|++++|.+++.++. +.+|+.|+++
T Consensus 156 ~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~ 234 (239)
T 2xwt_C 156 NETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234 (239)
T ss_dssp SSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECT
T ss_pred cceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeecc
Confidence 999 9999999999 666554444899999999995 986667778899 9999999999999988774 7789999998
Q ss_pred CC
Q 015481 339 QN 340 (406)
Q Consensus 339 ~N 340 (406)
++
T Consensus 235 ~~ 236 (239)
T 2xwt_C 235 NT 236 (239)
T ss_dssp TC
T ss_pred Cc
Confidence 75
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=3.1e-24 Score=206.52 Aligned_cols=232 Identities=16% Similarity=0.162 Sum_probs=185.8
Q ss_pred CcEEEEECCCCCccccCc----ccccCCC-CCCEEEcCCCcCCccCCchhhCC-----cCCceEecccccccccCchhh-
Q 015481 95 LTVAGIDLNQANIAGTLP----EKLGLLQ-DLALFHINSNRFCGTIPDSFRNM-----QLLFELDVSNNQFSGCFPSVV- 163 (406)
Q Consensus 95 ~~l~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~l- 163 (406)
.++++|+|++|.+++..+ ..|..++ +|++|++++|.+++..+..+..+ ++|++|+|++|.+++..+..+
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 469999999999987766 6788888 99999999999998777777775 999999999999997776644
Q ss_pred ---cCC-CCCcEEEeecCcCCCCCchhhhc-----c-ccCeeeccccccccCCCCCC----CC--CCccEEEcccccCCc
Q 015481 164 ---LCL-PSLKFLDIRFNQFEGEIPSAVFD-----L-KLDALFLNNNKFTSSLPNNI----GN--SPVSVLVLANNNFDS 227 (406)
Q Consensus 164 ---~~l-~~L~~L~Ls~N~l~~~~p~~~~~-----l-~L~~L~L~~n~l~~~~~~~~----~~--~~L~~L~l~~n~l~~ 227 (406)
..+ ++|++|++++|.+++..+..+.. . .|++|++++|.+++.....+ .. ..|++|++++|.+++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 444 89999999999998666555443 2 49999999999985443332 22 369999999999998
Q ss_pred CCchhHHhc-----ccccceeeeccCCCccc----Chhhhcc-CCCCcEEEeecCCCCCccc----hhhcCCCCCCEEeC
Q 015481 228 CLPPSLTKM-----AGTLNEIILANAKLKGC----LLKDIGL-LNQVTVFDVSFNNLVGSLP----ESMGNMKSLEQLNV 293 (406)
Q Consensus 228 ~~p~~l~~l-----~~~L~~L~l~~n~l~~~----~~~~l~~-l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~L 293 (406)
..+..+... . +|++|++++|++++. ++..+.. .++|++|+|++|.+++..+ ..+..+++|++|+|
T Consensus 182 ~~~~~l~~~l~~~~~-~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L 260 (362)
T 3goz_A 182 KNCAELAKFLASIPA-SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260 (362)
T ss_dssp SCHHHHHHHHHTSCT-TCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEE
T ss_pred hhHHHHHHHHHhCCC-CCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEe
Confidence 777666654 4 899999999999874 3445555 4699999999999997554 33567899999999
Q ss_pred cCCccccc-------CchhhcCCCCCCEEEeeCCcCCcCCC
Q 015481 294 AHNNLSGA-------IPNSICCLPKLENFTYSYNFFCTEPL 327 (406)
Q Consensus 294 s~N~l~~~-------~p~~l~~l~~L~~L~Ls~N~l~~~~~ 327 (406)
++|.+.+. ++..+..+++|+.||+++|.+.+..+
T Consensus 261 ~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp EHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred ccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 99995533 33456788899999999999987633
No 85
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=2.9e-22 Score=204.93 Aligned_cols=218 Identities=26% Similarity=0.279 Sum_probs=180.3
Q ss_pred CCCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEE
Q 015481 93 DCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFL 172 (406)
Q Consensus 93 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 172 (406)
.+++|+.|+|++|+++ .+|. .+++|++|++++|.+++ +|. .+++|++|++++|++++ +|.. +++|++|
T Consensus 79 ~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L 146 (622)
T 3g06_A 79 LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQEL 146 (622)
T ss_dssp CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEE
Confidence 4578999999999998 4665 67999999999999994 565 67899999999999985 5543 5899999
Q ss_pred EeecCcCCCCCchhhhccccCeeeccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCcc
Q 015481 173 DIRFNQFEGEIPSAVFDLKLDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKG 252 (406)
Q Consensus 173 ~Ls~N~l~~~~p~~~~~l~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~ 252 (406)
++++|.++ .+|..+ ..|+.|++++|.+++ +|. ....|+.|++++|.+++ +|.. .. +|+.|++++|+++.
T Consensus 147 ~Ls~N~l~-~l~~~~--~~L~~L~L~~N~l~~-l~~--~~~~L~~L~Ls~N~l~~-l~~~---~~-~L~~L~L~~N~l~~ 215 (622)
T 3g06_A 147 SVSDNQLA-SLPALP--SELCKLWAYNNQLTS-LPM--LPSGLQELSVSDNQLAS-LPTL---PS-ELYKLWAYNNRLTS 215 (622)
T ss_dssp ECCSSCCS-CCCCCC--TTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCCC---CT-TCCEEECCSSCCSS
T ss_pred ECcCCcCC-CcCCcc--CCCCEEECCCCCCCC-Ccc--cCCCCcEEECCCCCCCC-CCCc---cc-hhhEEECcCCcccc
Confidence 99999998 566422 239999999999985 552 23459999999999987 5543 23 89999999999987
Q ss_pred cChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC---cC
Q 015481 253 CLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL---AC 329 (406)
Q Consensus 253 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~---~~ 329 (406)
+|. .+++|++|+|++|+++ .+| ..+++|++|+|++|+|+ .+|. .+++|+.|+|++|.|+.++. .+
T Consensus 216 -l~~---~~~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l 283 (622)
T 3g06_A 216 -LPA---LPSGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRLPESLIHL 283 (622)
T ss_dssp -CCC---CCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSCCGGGGGS
T ss_pred -cCC---CCCCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcCCHHHhhc
Confidence 443 3588999999999999 466 45689999999999999 6776 67899999999999997654 56
Q ss_pred CCCCeeeCCCCCCCCC
Q 015481 330 LKLKVKDDRQNCIPNR 345 (406)
Q Consensus 330 ~~L~~L~l~~N~l~~~ 345 (406)
++|+.|++++|.+++.
T Consensus 284 ~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 284 SSETTVNLEGNPLSER 299 (622)
T ss_dssp CTTCEEECCSCCCCHH
T ss_pred cccCEEEecCCCCCCc
Confidence 7899999999999875
No 86
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.89 E-value=5.5e-25 Score=218.13 Aligned_cols=129 Identities=17% Similarity=0.125 Sum_probs=63.0
Q ss_pred ccEEEcccccCCcC----CchhHHhcccccceeeeccCCCcccChhhhcc-----CCCCcEEEeecCCCCCc----cchh
Q 015481 215 VSVLVLANNNFDSC----LPPSLTKMAGTLNEIILANAKLKGCLLKDIGL-----LNQVTVFDVSFNNLVGS----LPES 281 (406)
Q Consensus 215 L~~L~l~~n~l~~~----~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~-----l~~L~~L~Ls~N~l~~~----~p~~ 281 (406)
|++|++++|.+++. ++..+..+. +|++|++++|.+++..+..+.. .++|++|+|++|.+++. ++..
T Consensus 258 L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 336 (461)
T 1z7x_W 258 LRTLWIWECGITAKGCGDLCRVLRAKE-SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV 336 (461)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHHHCT-TCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceEEECcCCCCCHHHHHHHHHHHhhCC-CcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHH
Confidence 55555555555432 333333444 5555555555554332222221 14555555555555533 3444
Q ss_pred hcCCCCCCEEeCcCCcccccCchhhcC-----CCCCCEEEeeCCcCCc----CCC----cCCCCCeeeCCCCCCCC
Q 015481 282 MGNMKSLEQLNVAHNNLSGAIPNSICC-----LPKLENFTYSYNFFCT----EPL----ACLKLKVKDDRQNCIPN 344 (406)
Q Consensus 282 l~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~----~~~----~~~~L~~L~l~~N~l~~ 344 (406)
+..+++|++|+|++|.+++..+..+.. .++|++|++++|.+++ .++ .+++|+.|++++|+++.
T Consensus 337 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred HhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 445556666666666555443333321 4456666666665553 111 24556666666665553
No 87
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.89 E-value=1.6e-24 Score=214.83 Aligned_cols=268 Identities=16% Similarity=0.123 Sum_probs=205.5
Q ss_pred cEEEEECCCCCccc----cCcccccCCCCCCEEEcCCCcCCccCCchhhC-----CcCCceEecccccccccC----chh
Q 015481 96 TVAGIDLNQANIAG----TLPEKLGLLQDLALFHINSNRFCGTIPDSFRN-----MQLLFELDVSNNQFSGCF----PSV 162 (406)
Q Consensus 96 ~l~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~~~----p~~ 162 (406)
++++|+|++|.++. .++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++.. +..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 69999999999984 56888999999999999999998654444432 567999999999998643 566
Q ss_pred hcCCCCCcEEEeecCcCCCCCchhhhc-----c-ccCeeeccccccccC----CCCCCCC-CCccEEEcccccCCcCCch
Q 015481 163 VLCLPSLKFLDIRFNQFEGEIPSAVFD-----L-KLDALFLNNNKFTSS----LPNNIGN-SPVSVLVLANNNFDSCLPP 231 (406)
Q Consensus 163 l~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l-~L~~L~L~~n~l~~~----~~~~~~~-~~L~~L~l~~n~l~~~~p~ 231 (406)
+..+++|++|++++|.+.+..+..+.. . .|++|++++|.+++. ++..+.. ..|++|++++|.+.+....
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 777899999999999987544444432 3 499999999999853 3443333 4599999999998664322
Q ss_pred hHH-----hcccccceeeeccCCCccc----ChhhhccCCCCcEEEeecCCCCCccchhhcC-----CCCCCEEeCcCCc
Q 015481 232 SLT-----KMAGTLNEIILANAKLKGC----LLKDIGLLNQVTVFDVSFNNLVGSLPESMGN-----MKSLEQLNVAHNN 297 (406)
Q Consensus 232 ~l~-----~l~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~ 297 (406)
.+. ... +|++|++++|++++. ++..+..+++|++|+|++|.+++..+..+.. .++|++|++++|.
T Consensus 246 ~l~~~~~~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 246 ELCPGLLHPSS-RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHHHTSTTC-CCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHhcCCC-CceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 222 244 899999999999875 5667788999999999999998655544433 3699999999999
Q ss_pred cccc----CchhhcCCCCCCEEEeeCCcCCcCCC---------cCCCCCeeeCCCCCCCC-----CCC---CCCcccccc
Q 015481 298 LSGA----IPNSICCLPKLENFTYSYNFFCTEPL---------ACLKLKVKDDRQNCIPN-----RPF---QRSPMECKT 356 (406)
Q Consensus 298 l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~~---------~~~~L~~L~l~~N~l~~-----~p~---~~~~~~~~~ 356 (406)
+++. ++..+..+++|++|++++|.+++..+ ...+|+.|++++|.+++ +|. ..+.++...
T Consensus 325 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~ 404 (461)
T 1z7x_W 325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 404 (461)
T ss_dssp CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEE
T ss_pred CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEE
Confidence 9865 56677888999999999999987543 15689999999999984 331 234555667
Q ss_pred cccCCCCC
Q 015481 357 FYSHPVDC 364 (406)
Q Consensus 357 ~~~np~~C 364 (406)
+.+|++..
T Consensus 405 l~~N~i~~ 412 (461)
T 1z7x_W 405 LSNNCLGD 412 (461)
T ss_dssp CCSSSCCH
T ss_pred CCCCCCCH
Confidence 77777643
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=2.2e-22 Score=189.24 Aligned_cols=211 Identities=18% Similarity=0.295 Sum_probs=163.7
Q ss_pred EEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEeec
Q 015481 97 VAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRF 176 (406)
Q Consensus 97 l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 176 (406)
+..+.+..+.+.+.+. +..+++|++|++++|.++ .++ .+..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 21 ~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~ 94 (308)
T 1h6u_A 21 AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSG 94 (308)
T ss_dssp HHHHHTTCSSTTSEEC--HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCS
T ss_pred HHHHHhCCCCcCceec--HHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccC
Confidence 3344566666654432 456788888888888887 355 57888888888888888885443 88888888888888
Q ss_pred CcCCCCCchhhhccc-cCeeeccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccCh
Q 015481 177 NQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLL 255 (406)
Q Consensus 177 N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~ 255 (406)
|.++ .++ .+..+. |++|++++|+++ + ++. +..+. +|++|++++|++++..+
T Consensus 95 n~l~-~~~-~~~~l~~L~~L~l~~n~l~-----------------------~-~~~-l~~l~-~L~~L~l~~n~l~~~~~ 146 (308)
T 1h6u_A 95 NPLK-NVS-AIAGLQSIKTLDLTSTQIT-----------------------D-VTP-LAGLS-NLQVLYLDLNQITNISP 146 (308)
T ss_dssp CCCS-CCG-GGTTCTTCCEEECTTSCCC-----------------------C-CGG-GTTCT-TCCEEECCSSCCCCCGG
T ss_pred CcCC-Cch-hhcCCCCCCEEECCCCCCC-----------------------C-chh-hcCCC-CCCEEECCCCccCcCcc
Confidence 8887 343 344443 555555555543 3 332 66666 99999999999998443
Q ss_pred hhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC--cCCCCC
Q 015481 256 KDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL--ACLKLK 333 (406)
Q Consensus 256 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~L~ 333 (406)
+..+++|++|+|++|++++ ++. +..+++|++|++++|++++ ++. +..+++|+.|++++|.+++.++ .+++|+
T Consensus 147 --l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~ 220 (308)
T 1h6u_A 147 --LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDVSPLANTSNLF 220 (308)
T ss_dssp --GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBCGGGTTCTTCC
T ss_pred --ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCccccccCCCCCC
Confidence 8899999999999999995 444 8999999999999999984 443 8899999999999999998876 677899
Q ss_pred eeeCCCCCCCCCCC
Q 015481 334 VKDDRQNCIPNRPF 347 (406)
Q Consensus 334 ~L~l~~N~l~~~p~ 347 (406)
.|++++|+++..|.
T Consensus 221 ~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 221 IVTLTNQTITNQPV 234 (308)
T ss_dssp EEEEEEEEEECCCE
T ss_pred EEEccCCeeecCCe
Confidence 99999999998874
No 89
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.87 E-value=1.3e-22 Score=205.28 Aligned_cols=196 Identities=25% Similarity=0.384 Sum_probs=148.3
Q ss_pred Cccee-ecCCCCCCCCCCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccc
Q 015481 79 NYTGV-YCAPAPDDPDCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSG 157 (406)
Q Consensus 79 ~w~gv-~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 157 (406)
.|.|+ .|.. .+++.|++++|++++ +|..+. ++|++|++++|.|+ .+| ..+++|++|++++|+|++
T Consensus 49 ~~~~l~~C~~-------~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ 114 (571)
T 3cvr_A 49 AVSLLKECLI-------NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST 114 (571)
T ss_dssp HHHHHHHHHH-------TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC
T ss_pred hhhhcccccc-------CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC
Confidence 68998 6752 489999999999986 777663 88999999999999 677 457899999999999996
Q ss_pred cCchhhcCCCCCcEEEeecCcCCCCCchhhhccc-cCeeeccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhc
Q 015481 158 CFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKM 236 (406)
Q Consensus 158 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l 236 (406)
+|. +.. +|++|+|++|.+++ +|. .++ |++|++++|.+++ +|. ...+|++|++++|.+++ +|. +.
T Consensus 115 -ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~L~~-lp~-l~-- 179 (571)
T 3cvr_A 115 -LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRNNQLTF-LPE-LP-- 179 (571)
T ss_dssp -CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC-CC--
T ss_pred -cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC--cCCCcCEEECCCCCCCC-cch-hh--
Confidence 666 655 99999999999995 776 344 9999999999885 554 33457788888887776 665 33
Q ss_pred ccccceeeeccCCCcccChhhhccCCCC-------cEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCC
Q 015481 237 AGTLNEIILANAKLKGCLLKDIGLLNQV-------TVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCL 309 (406)
Q Consensus 237 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L-------~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 309 (406)
. +|++|++++|+++. +|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|.+++.+|..+..+
T Consensus 180 ~-~L~~L~Ls~N~L~~-lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 180 E-SLEALDVSTNLLES-LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp T-TCCEEECCSSCCSS-CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred C-CCCEEECcCCCCCc-hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 3 77788888777774 444 433 56 77777777777 567666667777777777777777777766554
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=5.5e-23 Score=195.30 Aligned_cols=230 Identities=15% Similarity=0.134 Sum_probs=187.0
Q ss_pred CcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCcc-CCchhhCCcCCceEecccccccccCchhhcCCCCCcEEE
Q 015481 95 LTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGT-IPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLD 173 (406)
Q Consensus 95 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 173 (406)
.+++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 5899999999999877665 66899999999999999866 788899999999999999999988888999999999999
Q ss_pred eecC-cCCCC-Cchhhhccc-cCeeecccc-ccccC-CCCCCC-CC-CccEEEcccc--cCC-cCCchhHHhccccccee
Q 015481 174 IRFN-QFEGE-IPSAVFDLK-LDALFLNNN-KFTSS-LPNNIG-NS-PVSVLVLANN--NFD-SCLPPSLTKMAGTLNEI 243 (406)
Q Consensus 174 Ls~N-~l~~~-~p~~~~~l~-L~~L~L~~n-~l~~~-~~~~~~-~~-~L~~L~l~~n--~l~-~~~p~~l~~l~~~L~~L 243 (406)
+++| .+++. ++..+..++ |++|++++| .+++. ++..+. .. +|++|++++| .++ +.++..+..++ +|++|
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~-~L~~L 227 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP-NLVHL 227 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT-TCSEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCC-CCCEE
Confidence 9999 67753 666677777 999999999 88753 344333 34 6999999999 555 44667777777 99999
Q ss_pred eeccCC-CcccChhhhccCCCCcEEEeecCC-CCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCc
Q 015481 244 ILANAK-LKGCLLKDIGLLNQVTVFDVSFNN-LVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNF 321 (406)
Q Consensus 244 ~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 321 (406)
++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++| ++...-..+. .+|+.|++++|.
T Consensus 228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~ 304 (336)
T 2ast_B 228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSH 304 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCC
T ss_pred eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEeccc
Confidence 999999 777778889999999999999995 33333336888999999999999 5533322332 236667799999
Q ss_pred CCcCCCcC
Q 015481 322 FCTEPLAC 329 (406)
Q Consensus 322 l~~~~~~~ 329 (406)
+++..|..
T Consensus 305 l~~~~~~~ 312 (336)
T 2ast_B 305 FTTIARPT 312 (336)
T ss_dssp SCCTTCSS
T ss_pred CccccCCc
Confidence 99988754
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=1.5e-21 Score=186.92 Aligned_cols=238 Identities=17% Similarity=0.172 Sum_probs=177.9
Q ss_pred CCcceeecCCC--CCCC--CCCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCC-chhhCCcCCce-Eecc
Q 015481 78 CNYTGVYCAPA--PDDP--DCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIP-DSFRNMQLLFE-LDVS 151 (406)
Q Consensus 78 c~w~gv~c~~~--~~~~--~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~-L~Ls 151 (406)
|.|..|.|... ...+ -..++++|+|++|+|+...+..|.++++|++|+|++|++.+.+| ..|.++++|++ +.++
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 77888999642 1111 23579999999999996656679999999999999999876665 46788988775 6677
Q ss_pred cccccccCchhhcCCCCCcEEEeecCcCCCCCchhhhcc-ccCeeeccc-cccccCCCCCCCCC--CccEEEcccccCCc
Q 015481 152 NNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDL-KLDALFLNN-NKFTSSLPNNIGNS--PVSVLVLANNNFDS 227 (406)
Q Consensus 152 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~L~~-n~l~~~~~~~~~~~--~L~~L~l~~n~l~~ 227 (406)
.|+++...|..|..+++|++|++++|++++..+..+... .+..+++.+ +++....+..+... .++.|++++|.++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 899998888889999999999999999984433333333 378888865 55654444444443 37889999999986
Q ss_pred CCchhHHhcccccceeeecc-CCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhh
Q 015481 228 CLPPSLTKMAGTLNEIILAN-AKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSI 306 (406)
Q Consensus 228 ~~p~~l~~l~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 306 (406)
++..++... +|++|++.+ |.++...+..|..+++|++|||++|+|+ .+|.. .+.+|+.|.+.++.--..+| .+
T Consensus 169 -i~~~~f~~~-~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP-~l 242 (350)
T 4ay9_X 169 -IHNSAFNGT-QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLP-TL 242 (350)
T ss_dssp -ECTTSSTTE-EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCC-CT
T ss_pred -CChhhcccc-chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCC-Cc
Confidence 666666777 899999975 5566544457889999999999999999 66643 35667777766554333677 47
Q ss_pred cCCCCCCEEEeeCCc
Q 015481 307 CCLPKLENFTYSYNF 321 (406)
Q Consensus 307 ~~l~~L~~L~Ls~N~ 321 (406)
..+++|+.++++++.
T Consensus 243 ~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 243 EKLVALMEASLTYPS 257 (350)
T ss_dssp TTCCSCCEEECSCHH
T ss_pred hhCcChhhCcCCCCc
Confidence 889999999998764
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=6.4e-21 Score=173.79 Aligned_cols=176 Identities=18% Similarity=0.156 Sum_probs=134.4
Q ss_pred CCceEecccccccccCchhhcCCCCCcEEEeecCcCCCCCchhhhccccCeeeccccccccCCCCCCCCCCccEEEcccc
Q 015481 144 LLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLKLDALFLNNNKFTSSLPNNIGNSPVSVLVLANN 223 (406)
Q Consensus 144 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n 223 (406)
..++++++++.++ .+|..+. ++|+.|+|++|.+++..+..+..++ .|++|++++|
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~----------------------~L~~L~L~~n 69 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLT----------------------KLTWLNLDYN 69 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCT----------------------TCCEEECTTS
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcc----------------------cCCEEECCCC
Confidence 3556677776666 4454433 4666666666666644444444444 2444444455
Q ss_pred cCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCc
Q 015481 224 NFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIP 303 (406)
Q Consensus 224 ~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 303 (406)
.+++..+..+..+. +|++|++++|++++..+..+..+++|++|+|++|++++..+..+..+++|++|+|++|+|++..+
T Consensus 70 ~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 148 (251)
T 3m19_A 70 QLQTLSAGVFDDLT-ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148 (251)
T ss_dssp CCCCCCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cCCccCHhHhccCC-cCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH
Confidence 54444444556666 89999999999998777888999999999999999996666678999999999999999996666
Q ss_pred hhhcCCCCCCEEEeeCCcCCcCCC----cCCCCCeeeCCCCCCCCC
Q 015481 304 NSICCLPKLENFTYSYNFFCTEPL----ACLKLKVKDDRQNCIPNR 345 (406)
Q Consensus 304 ~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~L~~L~l~~N~l~~~ 345 (406)
..+..+++|++|+|++|+|++.++ .+.+|+.|++++|.++..
T Consensus 149 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 689999999999999999999886 467899999999999876
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=3e-21 Score=170.78 Aligned_cols=181 Identities=19% Similarity=0.182 Sum_probs=102.0
Q ss_pred CCCcceeecCCCCC----CCCCCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEeccc
Q 015481 77 VCNYTGVYCAPAPD----DPDCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSN 152 (406)
Q Consensus 77 ~c~w~gv~c~~~~~----~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 152 (406)
.|.|.++.|..... .....+++.|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|++++
T Consensus 6 ~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 6 SCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 47899999974211 01223556666666666544444455566666666666666544444455556666666666
Q ss_pred ccccccCchhhcCCCCCcEEEeecCcCCCCCchhhhccccCeeeccccccccCCCCCCCCCCccEEEcccccCCcCCchh
Q 015481 153 NQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLKLDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPS 232 (406)
Q Consensus 153 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~ 232 (406)
|++++..+..|..+++|++|++++|.+++..+..+..+. +|++|++++|.+++..+..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~----------------------~L~~L~l~~N~l~~~~~~~ 143 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLT----------------------QLKDLRLYQNQLKSVPDGV 143 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT----------------------TCCEEECCSSCCSCCCTTT
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCC----------------------cCCEEECCCCccceeCHHH
Confidence 666544444455556666666666655533332333333 2444555555444433333
Q ss_pred HHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCC
Q 015481 233 LTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKS 287 (406)
Q Consensus 233 l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 287 (406)
+..+. +|++|++++|.+.+ .+++|++|+++.|+++|.+|..++.++.
T Consensus 144 ~~~l~-~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 144 FDRLT-SLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTTCT-TCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred hccCC-CccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 44455 77777777776654 3456777777777777777777766554
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=4.4e-21 Score=193.96 Aligned_cols=182 Identities=23% Similarity=0.310 Sum_probs=155.3
Q ss_pred CCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEeecCcCCCCCchhhhccccCeeecc
Q 015481 119 QDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLKLDALFLN 198 (406)
Q Consensus 119 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~L~~L~L~ 198 (406)
.+|+.|++++|.+++ +|..+ +++|++|+|++|+|+ .+| ..+++|++|++++|.|++ +|. +.. .|++|+++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~-~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA-SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT-TCCEEECC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc-CCCEEECC
Confidence 389999999999996 77755 378999999999999 667 457999999999999995 887 554 79999999
Q ss_pred ccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCcc
Q 015481 199 NNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSL 278 (406)
Q Consensus 199 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 278 (406)
+|++++ +|. ...+|+.|++++|.+++ +|. .+. +|++|++++|++++ +|. +. ++|++|+|++|+|+ .+
T Consensus 129 ~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~---~l~-~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE--LPALLEYINADNNQLTM-LPE---LPT-SLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC---CCT-TCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC--cCccccEEeCCCCccCc-CCC---cCC-CcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 999986 666 44569999999999987 666 344 99999999999998 666 55 89999999999999 77
Q ss_pred chhhcCCCCC-------CEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC
Q 015481 279 PESMGNMKSL-------EQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL 327 (406)
Q Consensus 279 p~~l~~l~~L-------~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~ 327 (406)
|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|.|++.+|
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 77 654 77 99999999999 789988889999999999999998766
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=2.6e-21 Score=185.18 Aligned_cols=235 Identities=14% Similarity=0.126 Sum_probs=176.3
Q ss_pred EEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCc-hhhcCCCCCcE-EEee
Q 015481 98 AGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFP-SVVLCLPSLKF-LDIR 175 (406)
Q Consensus 98 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~-L~Ls 175 (406)
+.++-++++++ .+|..+ .+++++|+|++|+|+...+..|+++++|++|+|++|++.+.+| ..|.++++|++ +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 35677888888 677766 3689999999999995545679999999999999999876555 56788988775 6677
Q ss_pred cCcCCCCCchhhhccc-cCeeeccccccccCCCCCC-CCCCccEEEccc-ccCCcCCchhHHhcccccceeeeccCCCcc
Q 015481 176 FNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNI-GNSPVSVLVLAN-NNFDSCLPPSLTKMAGTLNEIILANAKLKG 252 (406)
Q Consensus 176 ~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~-n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~ 252 (406)
.|+++...|..+..++ |++|++++|++....+..+ ...++..+++.+ +.+....+..+..+...++.|++++|+++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 8999955567777777 9999999999986554443 334578888866 455543334455555478999999999987
Q ss_pred cChhhhccCCCCcEEEeec-CCCCCccc-hhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCC-cCCcCCC--
Q 015481 253 CLLKDIGLLNQVTVFDVSF-NNLVGSLP-ESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYN-FFCTEPL-- 327 (406)
Q Consensus 253 ~~~~~l~~l~~L~~L~Ls~-N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~~-- 327 (406)
++.......+|+.|++++ |.++ .+| ..|..+++|++|+|++|+|+ .+|.. .+.+|+.|.+.++ .+...++
T Consensus 169 -i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP~l~ 243 (350)
T 4ay9_X 169 -IHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLPTLE 243 (350)
T ss_dssp -ECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCCCTT
T ss_pred -CChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCCCch
Confidence 444444567899999985 5666 666 46899999999999999999 56543 3556666666544 4555543
Q ss_pred cCCCCCeeeCCCC
Q 015481 328 ACLKLKVKDDRQN 340 (406)
Q Consensus 328 ~~~~L~~L~l~~N 340 (406)
.+.+|+.++++++
T Consensus 244 ~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 244 KLVALMEASLTYP 256 (350)
T ss_dssp TCCSCCEEECSCH
T ss_pred hCcChhhCcCCCC
Confidence 5778888888764
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=4e-20 Score=172.31 Aligned_cols=173 Identities=18% Similarity=0.328 Sum_probs=107.3
Q ss_pred cCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEeecCcCCCCCchhhhccc-cCe
Q 015481 116 GLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLK-LDA 194 (406)
Q Consensus 116 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-L~~ 194 (406)
..+++|+.|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|++|++++|.++ .++. +..++ |++
T Consensus 43 ~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS-LKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG-GTTCTTCCE
T ss_pred hhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh-hccCCCCCE
Confidence 345566666666666652 33 25566666666666666664333 566666666666666665 2322 33333 444
Q ss_pred eeccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCC
Q 015481 195 LFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNL 274 (406)
Q Consensus 195 L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l 274 (406)
|++++|+++ + + ..+..+. +|++|++++|++++. ..+..+++|+.|+|++|++
T Consensus 117 L~L~~n~i~-----------------------~-~-~~l~~l~-~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 117 LSLEHNGIS-----------------------D-I-NGLVHLP-QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI 168 (291)
T ss_dssp EECTTSCCC-----------------------C-C-GGGGGCT-TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred EECCCCcCC-----------------------C-C-hhhcCCC-CCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcc
Confidence 444444443 2 1 2344444 677777777777663 5567777888888888888
Q ss_pred CCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCC
Q 015481 275 VGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEP 326 (406)
Q Consensus 275 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 326 (406)
++..+ +..+++|++|++++|.|+ .++ .+..+++|+.|++++|.++..+
T Consensus 169 ~~~~~--l~~l~~L~~L~L~~N~i~-~l~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 169 SDIVP--LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred ccchh--hcCCCccCEEECCCCcCC-CCh-hhccCCCCCEEECcCCcccCCc
Confidence 74433 777788888888888887 344 3777888888888888777644
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=2.8e-20 Score=164.51 Aligned_cols=180 Identities=18% Similarity=0.197 Sum_probs=138.6
Q ss_pred EEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEeecC
Q 015481 98 AGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFN 177 (406)
Q Consensus 98 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 177 (406)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..|+++++|++|++++|++++..+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 56778888776 445444 468889999999988666666788889999999999888666666788888888888888
Q ss_pred cCCCCCchhhhccc-cCeeeccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChh
Q 015481 178 QFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLK 256 (406)
Q Consensus 178 ~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~ 256 (406)
.+++..+..+..++ |++|++++|+++ +..+..+..+. +|++|++++|++++..+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-----------------------~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~ 142 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQ-----------------------SLPDGVFDKLT-QLKDLRLYQNQLKSVPDG 142 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-----------------------CCCTTTTTTCT-TCCEEECCSSCCSCCCTT
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCc-----------------------ccCHhHhccCC-cCCEEECCCCccceeCHH
Confidence 88843333344444 555555555554 33333355666 999999999999987777
Q ss_pred hhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCC
Q 015481 257 DIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPK 311 (406)
Q Consensus 257 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 311 (406)
.+..+++|++|+|++|.+.+. +++|++|+++.|+++|.+|.+++.++.
T Consensus 143 ~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 143 VFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred HhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCceeeccCccccC
Confidence 789999999999999988753 468999999999999999999887765
No 98
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=1.4e-19 Score=162.66 Aligned_cols=164 Identities=21% Similarity=0.248 Sum_probs=107.8
Q ss_pred CCCCCCCCCCcceeecCCCCCCCCCCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEe
Q 015481 70 SNWCGPNVCNYTGVYCAPAPDDPDCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELD 149 (406)
Q Consensus 70 ~~w~~~~~c~w~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 149 (406)
..|.+...|.|.++.|.. +.+. .+|..+. ++|++|++++|.+++..|..|.++++|++|+
T Consensus 11 ~~~~~~~~Cs~~~v~c~~-----------------~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 70 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRS-----------------KRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELY 70 (229)
T ss_dssp CCCCTTCEEETTEEECTT-----------------SCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccCCCCCEEeCCEeEccC-----------------CCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEE
Confidence 455667789999999963 2232 4454443 7888888888888877788888888888888
Q ss_pred cccccccccCchhhcCCCCCcEEEeecCcCCCCCchhhhccccCeeeccccccccCCCCCCCCCCccEEEcccccCCcCC
Q 015481 150 VSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLKLDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCL 229 (406)
Q Consensus 150 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~ 229 (406)
|++|+|+...+..|..+++|++|+|++|.+++..+..+..+
T Consensus 71 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l--------------------------------------- 111 (229)
T 3e6j_A 71 LGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRL--------------------------------------- 111 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC---------------------------------------
T ss_pred CCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcc---------------------------------------
Confidence 88888876655667888888888888888873222222222
Q ss_pred chhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCccccc
Q 015481 230 PPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGA 301 (406)
Q Consensus 230 p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 301 (406)
. +|++|++++|+++. +|..+..+++|++|+|++|++++..+..+..+++|++|+|++|.+...
T Consensus 112 -------~-~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 112 -------V-HLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp -------T-TCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred -------h-hhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 2 45555555555542 444555566666666666666644444566666666666666666544
No 99
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.82 E-value=1.1e-22 Score=206.42 Aligned_cols=200 Identities=19% Similarity=0.222 Sum_probs=143.8
Q ss_pred cCCCCCCEEEcCCCcCCccCCchhhCCcCCceEeccccc-------------ccccCchhhcCCCCCcEEE-eecCcCCC
Q 015481 116 GLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQ-------------FSGCFPSVVLCLPSLKFLD-IRFNQFEG 181 (406)
Q Consensus 116 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-------------l~~~~p~~l~~l~~L~~L~-Ls~N~l~~ 181 (406)
...++|+.|+|++|+++ .+|..++++++|++|++++|. +.+..|..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 45667777777777776 667777777777777776654 3344445555555555555 4444322
Q ss_pred CCchhhhccccCeeeccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccC
Q 015481 182 EIPSAVFDLKLDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLL 261 (406)
Q Consensus 182 ~~p~~~~~l~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l 261 (406)
.|+.+.+++|.++...+ ..++.|++++|.+++ +|. +..+. +|+.|++++|+++ .+|..++.+
T Consensus 424 ---------~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~-~L~~L~Ls~N~l~-~lp~~~~~l 485 (567)
T 1dce_A 424 ---------DLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTV-LCH-LEQLL-LVTHLDLSHNRLR-ALPPALAAL 485 (567)
T ss_dssp ---------HHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSS-CCC-GGGGT-TCCEEECCSSCCC-CCCGGGGGC
T ss_pred ---------hhhhhhhhcccccccCc-----cCceEEEecCCCCCC-CcC-ccccc-cCcEeecCccccc-ccchhhhcC
Confidence 13334444555542211 237888888888877 665 77777 8999999999988 478888889
Q ss_pred CCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccC-chhhcCCCCCCEEEeeCCcCCcCCCc-------CCCCC
Q 015481 262 NQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAI-PNSICCLPKLENFTYSYNFFCTEPLA-------CLKLK 333 (406)
Q Consensus 262 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~~~-------~~~L~ 333 (406)
++|+.|+|++|+|++ +| .++.+++|++|+|++|+|++.. |..+..+++|+.|+|++|.|++.++. +++|+
T Consensus 486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~ 563 (567)
T 1dce_A 486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 563 (567)
T ss_dssp TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccC
Confidence 999999999999984 67 7888899999999999998665 88888899999999999999888762 56777
Q ss_pred eeeC
Q 015481 334 VKDD 337 (406)
Q Consensus 334 ~L~l 337 (406)
.|++
T Consensus 564 ~L~l 567 (567)
T 1dce_A 564 SILT 567 (567)
T ss_dssp EEEC
T ss_pred ccCC
Confidence 7764
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=1.6e-19 Score=168.32 Aligned_cols=190 Identities=19% Similarity=0.289 Sum_probs=148.3
Q ss_pred CCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEeecCcCCCCCchhhhccc-cCeeecc
Q 015481 120 DLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLK-LDALFLN 198 (406)
Q Consensus 120 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-L~~L~L~ 198 (406)
++..+.+..+.+++.. .+..+++|++|++++|.++.. + .+..+++|++|++++|.+++ ++. +..++ |++|+++
T Consensus 25 ~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECC
Confidence 3444456666666432 256788889999999888743 3 47788889999998888884 443 55554 6666666
Q ss_pred ccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCcc
Q 015481 199 NNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSL 278 (406)
Q Consensus 199 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 278 (406)
+|.++ + + ..+..+. +|++|++++|++++. ..+..+++|++|++++|++++.
T Consensus 99 ~n~l~-----------------------~-~-~~l~~l~-~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~- 149 (291)
T 1h6t_A 99 ENKVK-----------------------D-L-SSLKDLK-KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI- 149 (291)
T ss_dssp SSCCC-----------------------C-G-GGGTTCT-TCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-
T ss_pred CCcCC-----------------------C-C-hhhccCC-CCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-
Confidence 66654 2 2 2355666 999999999999883 5688999999999999999954
Q ss_pred chhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC--cCCCCCeeeCCCCCCCCCCC
Q 015481 279 PESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL--ACLKLKVKDDRQNCIPNRPF 347 (406)
Q Consensus 279 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~L~~L~l~~N~l~~~p~ 347 (406)
..+..+++|++|++++|++++..+ +..+++|+.|++++|.+++.+. .+.+|+.|++++|+++..|.
T Consensus 150 -~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 150 -TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEEECCCE
T ss_pred -hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCcccCCcc
Confidence 578999999999999999995444 8999999999999999998654 67789999999999988763
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=1.3e-19 Score=184.94 Aligned_cols=188 Identities=16% Similarity=0.305 Sum_probs=89.7
Q ss_pred EEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEeecC
Q 015481 98 AGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFN 177 (406)
Q Consensus 98 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 177 (406)
..+.+..+.+...++ +..+.+|+.|++++|.+. .++ .+..+++|++|+|++|++++..+ +..+++|+.|+|++|
T Consensus 24 ~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 24 IKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred HHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC
Confidence 334444444443322 344555556666666555 233 35555666666666666554332 555566666666666
Q ss_pred cCCCCCchhhhccc-cCeeeccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChh
Q 015481 178 QFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLK 256 (406)
Q Consensus 178 ~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~ 256 (406)
.+. .++ .+..++ |++|+|++|.+.+ + ..+..+. +|+.|+|++|++++. .
T Consensus 98 ~l~-~l~-~l~~l~~L~~L~Ls~N~l~~-l------------------------~~l~~l~-~L~~L~Ls~N~l~~l--~ 147 (605)
T 1m9s_A 98 KIK-DLS-SLKDLKKLKSLSLEHNGISD-I------------------------NGLVHLP-QLESLYLGNNKITDI--T 147 (605)
T ss_dssp CCC-CCT-TSTTCTTCCEEECTTSCCCC-C------------------------GGGGGCT-TCSEEECCSSCCCCC--G
T ss_pred CCC-CCh-hhccCCCCCEEEecCCCCCC-C------------------------ccccCCC-ccCEEECCCCccCCc--h
Confidence 555 222 233333 4444444444432 1 1233333 445555555544442 3
Q ss_pred hhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcC
Q 015481 257 DIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTE 325 (406)
Q Consensus 257 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 325 (406)
.+..+++|+.|+|++|.+++..| +..+++|+.|+|++|+|++ ++ .+..+++|+.|+|++|.+++.
T Consensus 148 ~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 148 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp GGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred hhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCC
Confidence 34445555555555555543333 4445555555555555542 22 344455555555555554443
No 102
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.79 E-value=2.3e-20 Score=194.80 Aligned_cols=256 Identities=21% Similarity=0.171 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCC--CCCCCcceeecCCCCCCCCCCcEEEEECCCCCccccCcccccCCCCCCE--
Q 015481 48 LKAYIALQFWKLSITSDPNGFTSNWCG--PNVCNYTGVYCAPAPDDPDCLTVAGIDLNQANIAGTLPEKLGLLQDLAL-- 123 (406)
Q Consensus 48 ~~~~~~L~~~~~~~~~~~~~~~~~w~~--~~~c~w~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~-- 123 (406)
..++.++..+..++.+..+.....|.. ...+.|.++.+.. ++++.|+|.++.+... +..+.....|..
T Consensus 131 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-------~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~ 202 (727)
T 4b8c_D 131 DCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST-------PLTPKIELFANGKDEA-NQALLQHKKLSQYS 202 (727)
T ss_dssp -CCCHHHHHHHHHHHHHHTTC-----------------------------------------------------------
T ss_pred ccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC-------CccceEEeeCCCCCcc-hhhHhhcCccCccc
Confidence 344456666666655444444556642 2346788877653 4677788877777642 333222222222
Q ss_pred ---EEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEeecCcCCCCCchhhhccc-cCeeeccc
Q 015481 124 ---FHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLK-LDALFLNN 199 (406)
Q Consensus 124 ---L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-L~~L~L~~ 199 (406)
+++..|++. ..+..|..+..|++|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..+..+. |++|+|++
T Consensus 203 i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~ 279 (727)
T 4b8c_D 203 IDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSH 279 (727)
T ss_dssp --------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTT
T ss_pred ccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcC
Confidence 223334343 44566777777777777777776 55655667777777777777777 7777777766 77777777
Q ss_pred cccccCCCCCCCCCC-ccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCC-CcEEEeecCCCCCc
Q 015481 200 NKFTSSLPNNIGNSP-VSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQ-VTVFDVSFNNLVGS 277 (406)
Q Consensus 200 n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~Ls~N~l~~~ 277 (406)
|+|+ .+|..++... |++|+|++|.++ .+|..+..+. +|++|+|++|.+++.+|..+..+.. +..++|++|.+++.
T Consensus 280 N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~ 356 (727)
T 4b8c_D 280 NRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLC-NLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIP 356 (727)
T ss_dssp SCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCT-TCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCC-CccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCc
Confidence 7777 5566665543 777777777775 4666666666 7777777777777766666544322 22356777777766
Q ss_pred cchhhcCCCCCCEEeCcCC--------cccccCchhhcCCCCCCEEEeeCCcCC
Q 015481 278 LPESMGNMKSLEQLNVAHN--------NLSGAIPNSICCLPKLENFTYSYNFFC 323 (406)
Q Consensus 278 ~p~~l~~l~~L~~L~Ls~N--------~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 323 (406)
+|. .|+.|++++| .+.+..+..+..+.+++...+++|-+.
T Consensus 357 ~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 357 LPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp CCC------C-----------------------------------------CCC
T ss_pred Ccc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 664 3445555555 233333334445555666666777664
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=5.4e-19 Score=180.38 Aligned_cols=192 Identities=19% Similarity=0.288 Sum_probs=154.7
Q ss_pred CCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEeecCcCCCCCchhhhccc-cCeee
Q 015481 118 LQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLK-LDALF 196 (406)
Q Consensus 118 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-L~~L~ 196 (406)
+..+..+.+..+.+.+..+ +..+.+|++|++++|.++. ++ .+..+++|+.|+|++|.+.+ ++. +..+. |+.|+
T Consensus 20 l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~ 93 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEE
T ss_pred HHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEE
Confidence 3445566777777774433 5788899999999999984 44 58889999999999999984 443 55555 77777
Q ss_pred ccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCC
Q 015481 197 LNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVG 276 (406)
Q Consensus 197 L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 276 (406)
|++|.+.+ ++ .+..+. +|++|+|++|++.+. ..+..+++|+.|+|++|.+++
T Consensus 94 Ls~N~l~~------------------------l~-~l~~l~-~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 145 (605)
T 1m9s_A 94 LDENKIKD------------------------LS-SLKDLK-KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD 145 (605)
T ss_dssp CCSSCCCC------------------------CT-TSTTCT-TCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred CcCCCCCC------------------------Ch-hhccCC-CCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCC
Confidence 77777652 11 344555 999999999999883 468899999999999999995
Q ss_pred ccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC--cCCCCCeeeCCCCCCCCCCC
Q 015481 277 SLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL--ACLKLKVKDDRQNCIPNRPF 347 (406)
Q Consensus 277 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~L~~L~l~~N~l~~~p~ 347 (406)
. ..+..+++|+.|+|++|.|++..| +..+++|+.|+|++|.|++++. .+++|+.|+|++|.++..|.
T Consensus 146 l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 146 I--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp C--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEECCCC
T ss_pred c--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCcCCcc
Confidence 4 578999999999999999996655 8999999999999999998743 67889999999999988764
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=3e-18 Score=152.96 Aligned_cols=127 Identities=15% Similarity=0.098 Sum_probs=67.0
Q ss_pred ccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCc
Q 015481 215 VSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVA 294 (406)
Q Consensus 215 L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 294 (406)
++.|++++|.+++..+..+..+. +|++|++++|++++..+..|..+++|++|+|++|+|+...+..|..+++|++|+|+
T Consensus 34 l~~L~l~~n~i~~i~~~~~~~l~-~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 34 ITEIRLEQNTIKVIPPGAFSPYK-KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp CCEEECCSSCCCEECTTSSTTCT-TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCCCcCHhHhhCCC-CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 44444444444433333344444 55555555555555555555555556666666665553333334555556666666
Q ss_pred CCcccccCchhhcCCCCCCEEEeeCCcCCcCCC----cCCCCCeeeCCCCCC
Q 015481 295 HNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL----ACLKLKVKDDRQNCI 342 (406)
Q Consensus 295 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~L~~L~l~~N~l 342 (406)
+|+|++..|..|..+++|+.|+|++|.|++.++ .+.+|+.|++++|.+
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 665555555555555556666666665555544 234455555555544
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=2.1e-18 Score=153.91 Aligned_cols=153 Identities=20% Similarity=0.220 Sum_probs=86.7
Q ss_pred ceEecccccccccCchhhcCCCCCcEEEeecCcCCCCCch-hhhccc-cCeeeccccccccCCCCCCCCCCccEEEcccc
Q 015481 146 FELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPS-AVFDLK-LDALFLNNNKFTSSLPNNIGNSPVSVLVLANN 223 (406)
Q Consensus 146 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n 223 (406)
+++++++|.++ .+|..+. ..+++|+|++|.+++..+. .+..++ |++|++++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-------------------- 70 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-------------------- 70 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC--------------------
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC--------------------
Confidence 45666666665 3444332 3345666666665533221 223333 444444444433
Q ss_pred cCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCc
Q 015481 224 NFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIP 303 (406)
Q Consensus 224 ~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 303 (406)
+..+..+..+. +|++|++++|++++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|+|++..|
T Consensus 71 ---~i~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 146 (220)
T 2v70_A 71 ---DIEEGAFEGAS-GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146 (220)
T ss_dssp ---EECTTTTTTCT-TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred ---EECHHHhCCCC-CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH
Confidence 32233344444 66666666666666555566666666666666666665556666666667777777776665556
Q ss_pred hhhcCCCCCCEEEeeCCcCCcC
Q 015481 304 NSICCLPKLENFTYSYNFFCTE 325 (406)
Q Consensus 304 ~~l~~l~~L~~L~Ls~N~l~~~ 325 (406)
..|..+++|+.|+|++|.+.+.
T Consensus 147 ~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 147 GAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp TTTTTCTTCCEEECCSCCEECS
T ss_pred HHhcCCCCCCEEEecCcCCcCC
Confidence 6666666666666666666543
No 106
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.77 E-value=1e-19 Score=185.83 Aligned_cols=132 Identities=8% Similarity=0.026 Sum_probs=96.5
Q ss_pred CCccEEEcccccCCcCCchhHHh-cccccceeeec----cCCCccc-----ChhhhccCCCCcEEEeecCC--CCCccch
Q 015481 213 SPVSVLVLANNNFDSCLPPSLTK-MAGTLNEIILA----NAKLKGC-----LLKDIGLLNQVTVFDVSFNN--LVGSLPE 280 (406)
Q Consensus 213 ~~L~~L~l~~n~l~~~~p~~l~~-l~~~L~~L~l~----~n~l~~~-----~~~~l~~l~~L~~L~Ls~N~--l~~~~p~ 280 (406)
.+|++|++..|.+++..+..+.. +. +|++|+++ .|++++. ++..+..+++|++|+|++|. +++..+.
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~-~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLK-NLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCC-SCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCC-CCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 34778888777777766666665 44 78888885 5667653 34446678888888887543 6655555
Q ss_pred hhc-CCCCCCEEeCcCCccccc-CchhhcCCCCCCEEEeeCCcCCcCCC-----cCCCCCeeeCCCCCCCCC
Q 015481 281 SMG-NMKSLEQLNVAHNNLSGA-IPNSICCLPKLENFTYSYNFFCTEPL-----ACLKLKVKDDRQNCIPNR 345 (406)
Q Consensus 281 ~l~-~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~~-----~~~~L~~L~l~~N~l~~~ 345 (406)
.+. .+++|++|+|++|.+++. ++..+..+++|++|++++|.+++... .+++|+.|++++|+++..
T Consensus 457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 544 478899999999998763 45556788999999999999865321 478899999999998765
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.77 E-value=6e-19 Score=161.89 Aligned_cols=82 Identities=20% Similarity=0.346 Sum_probs=48.7
Q ss_pred ccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEee
Q 015481 239 TLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYS 318 (406)
Q Consensus 239 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 318 (406)
+|++|++++|++++. ..+..+++|+.|+|++|++++ ++ .+..+++|++|+|++|++++. ..+..+++|+.|+++
T Consensus 107 ~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 107 CLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLT 180 (263)
T ss_dssp SCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEE
T ss_pred cccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCC
Confidence 555555555555542 235556666666666666663 33 456666666666666666643 455666666666666
Q ss_pred CCcCCcCC
Q 015481 319 YNFFCTEP 326 (406)
Q Consensus 319 ~N~l~~~~ 326 (406)
+|.+++.+
T Consensus 181 ~N~~~~~~ 188 (263)
T 1xeu_A 181 GQKCVNEP 188 (263)
T ss_dssp EEEEECCC
T ss_pred CCcccCCc
Confidence 66666553
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=2.6e-18 Score=153.29 Aligned_cols=153 Identities=15% Similarity=0.195 Sum_probs=110.6
Q ss_pred ceEecccccccccCchhhcCCCCCcEEEeecCcCCCCCchhhhccccCeeeccccccccCCCCCCCCCCccEEEcccccC
Q 015481 146 FELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLKLDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNF 225 (406)
Q Consensus 146 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l 225 (406)
+.++++++.++ .+|..+. ++|++|++++|.|++..+..+..++ .|++|++++|.+
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~----------------------~L~~L~Ls~N~i 68 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYK----------------------KLRRIDLSNNQI 68 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCT----------------------TCCEEECCSSCC
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCC----------------------CCCEEECCCCcC
Confidence 45666666666 4444332 4566666666666633332333333 255555555555
Q ss_pred CcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchh
Q 015481 226 DSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNS 305 (406)
Q Consensus 226 ~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 305 (406)
++..|..+..+. +|++|+|++|+++...+..|..+++|++|+|++|++++..|..|..+++|++|+|++|+|++..+..
T Consensus 69 ~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 147 (220)
T 2v9t_B 69 SELAPDAFQGLR-SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT 147 (220)
T ss_dssp CEECTTTTTTCS-SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred CCcCHHHhhCCc-CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHH
Confidence 554555666666 8888888888888766667788999999999999999877888999999999999999999777777
Q ss_pred hcCCCCCCEEEeeCCcCCc
Q 015481 306 ICCLPKLENFTYSYNFFCT 324 (406)
Q Consensus 306 l~~l~~L~~L~Ls~N~l~~ 324 (406)
+..+++|+.|+|++|.+..
T Consensus 148 ~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 148 FSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTTCTTCCEEECCSSCEEC
T ss_pred HhCCCCCCEEEeCCCCcCC
Confidence 8889999999999998865
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=1.6e-18 Score=166.51 Aligned_cols=126 Identities=20% Similarity=0.272 Sum_probs=91.9
Q ss_pred EEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhh-CCcCCceEecccccccccCchhhcCCCCCcEEEeec
Q 015481 98 AGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFR-NMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRF 176 (406)
Q Consensus 98 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 176 (406)
+.+++++++++ .+|..+. ..++.|+|++|+|++..+..|. ++++|++|+|++|+|++..+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 46899999988 4676554 4689999999999977777777 899999999999999988778899999999999999
Q ss_pred CcCCCCCchhhhccc-cCeeeccccccccCCCCCCCCCC-ccEEEcccccCC
Q 015481 177 NQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNSP-VSVLVLANNNFD 226 (406)
Q Consensus 177 N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~ 226 (406)
|++++..+..+..+. |++|+|++|++++..+..+.... |+.|++++|.++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence 999844444455555 77777776666644444333322 344444444333
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=3.9e-18 Score=152.16 Aligned_cols=150 Identities=18% Similarity=0.148 Sum_probs=121.2
Q ss_pred CeeeccccccccCCCCCCCCCCccEEEcccccCCcCCch-hHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeec
Q 015481 193 DALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPP-SLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSF 271 (406)
Q Consensus 193 ~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~-~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 271 (406)
+.+++++|.++ .+|..+. ..+++|++++|.+++..+. .+..+. +|++|++++|++++..+..|..+++|++|+|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~-~~~~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP-QYTAELRLNNNEFTVLEATGIFKKLP-QLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC-TTCSEEECCSSCCCEECCCCCGGGCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC-CCCCEEEcCCCcCCccCchhhhccCC-CCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 34455555544 2343332 1256677777777665443 356676 999999999999998788999999999999999
Q ss_pred CCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC----cCCCCCeeeCCCCCCCCC
Q 015481 272 NNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL----ACLKLKVKDDRQNCIPNR 345 (406)
Q Consensus 272 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~L~~L~l~~N~l~~~ 345 (406)
|++++..+..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|.|++.++ .+.+|+.|++++|.++..
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 99998888889999999999999999998889999999999999999999999876 466899999999988654
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=7.1e-18 Score=151.42 Aligned_cols=128 Identities=21% Similarity=0.232 Sum_probs=73.7
Q ss_pred ccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCc
Q 015481 215 VSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVA 294 (406)
Q Consensus 215 L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 294 (406)
+++|++++|.+++..+..+..+. +|++|++++|+++...+..+..+++|++|+|++|+|++..+..|..+++|++|+|+
T Consensus 42 L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls 120 (229)
T 3e6j_A 42 AQILYLHDNQITKLEPGVFDSLI-NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC 120 (229)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCccCccCHHHhhCcc-CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEecc
Confidence 55555555555554444455554 56666666666655444455566666666666666664444445566666666666
Q ss_pred CCcccccCchhhcCCCCCCEEEeeCCcCCcCCC----cCCCCCeeeCCCCCCCC
Q 015481 295 HNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL----ACLKLKVKDDRQNCIPN 344 (406)
Q Consensus 295 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~L~~L~l~~N~l~~ 344 (406)
+|+|+ .+|..+..+++|+.|+|++|+|++.++ .+.+|+.|++++|.++.
T Consensus 121 ~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 121 CNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 66666 555556666666666666666665543 24456666666665543
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=2.6e-21 Score=196.29 Aligned_cols=202 Identities=16% Similarity=0.160 Sum_probs=155.1
Q ss_pred CCCcEEEEECCCCCccccCcccccCCCCCCEEEcCCCc-------------CCccCCchhhCCcCCceEe-ccccccccc
Q 015481 93 DCLTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNR-------------FCGTIPDSFRNMQLLFELD-VSNNQFSGC 158 (406)
Q Consensus 93 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-------------l~~~~p~~~~~l~~L~~L~-Ls~N~l~~~ 158 (406)
...+++.|+|++|.+. .+|+.++++++|+.|++++|. +.+.+|..++++++|+.|+ ++.|.+.
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-- 423 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-- 423 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH--
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc--
Confidence 3567788999999987 789999999999999998775 5667788899999999999 7777653
Q ss_pred CchhhcCCCCCcEEEeecCcCCCCCchhhhccccCeeeccccccccCCCCCCCC-CCccEEEcccccCCcCCchhHHhcc
Q 015481 159 FPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLKLDALFLNNNKFTSSLPNNIGN-SPVSVLVLANNNFDSCLPPSLTKMA 237 (406)
Q Consensus 159 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~ 237 (406)
.|+.+.+++|.++ .++. ..|+.|++++|.+++ +|. ++. ..|+.|++++|.++ .+|..+..+.
T Consensus 424 ---------~L~~l~l~~n~i~-~l~~----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 486 (567)
T 1dce_A 424 ---------DLRSKFLLENSVL-KMEY----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALR 486 (567)
T ss_dssp ---------HHHHHHHHHHHHH-HHHH----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCT
T ss_pred ---------hhhhhhhhccccc-ccCc----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCC
Confidence 2333444455544 2211 125666666666653 444 333 23777777777777 5788888888
Q ss_pred cccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCcc-chhhcCCCCCCEEeCcCCcccccCchh---hcCCCCCC
Q 015481 238 GTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSL-PESMGNMKSLEQLNVAHNNLSGAIPNS---ICCLPKLE 313 (406)
Q Consensus 238 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~---l~~l~~L~ 313 (406)
+|++|+|++|++++ +| .++.+++|+.|+|++|+|++.. |..++.+++|+.|+|++|.+++..|.. +..+++|+
T Consensus 487 -~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~ 563 (567)
T 1dce_A 487 -CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 563 (567)
T ss_dssp -TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred -CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccC
Confidence 99999999999998 66 8999999999999999999776 999999999999999999999665432 34589999
Q ss_pred EEEe
Q 015481 314 NFTY 317 (406)
Q Consensus 314 ~L~L 317 (406)
.|++
T Consensus 564 ~L~l 567 (567)
T 1dce_A 564 SILT 567 (567)
T ss_dssp EEEC
T ss_pred ccCC
Confidence 9875
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=4.2e-18 Score=163.55 Aligned_cols=173 Identities=21% Similarity=0.192 Sum_probs=134.1
Q ss_pred CCcceeecCCCC--CC--CCCCcEEEEECCCCCccccCccccc-CCCCCCEEEcCCCcCCccCCchhhCCcCCceEeccc
Q 015481 78 CNYTGVYCAPAP--DD--PDCLTVAGIDLNQANIAGTLPEKLG-LLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSN 152 (406)
Q Consensus 78 c~w~gv~c~~~~--~~--~~~~~l~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 152 (406)
|.+..+.|.... .. .-...++.|+|++|++++..+..+. ++++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus 18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp EETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 677778886421 11 1234688999999999988777787 999999999999999987778899999999999999
Q ss_pred ccccccCchhhcCCCCCcEEEeecCcCCCCCchhhhccc-cCeeeccccccccCCCCCC---C-CCCccEEEcccccCCc
Q 015481 153 NQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNI---G-NSPVSVLVLANNNFDS 227 (406)
Q Consensus 153 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~---~-~~~L~~L~l~~n~l~~ 227 (406)
|+|++..+..|..+++|++|+|++|.|++..+..+..+. |++|+|++|++++..+..+ . ...|+.|++++|.+++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 999987777899999999999999999976677888887 9999999999985433333 1 2347777777777766
Q ss_pred CCchhHHhcccc--cceeeeccCCCc
Q 015481 228 CLPPSLTKMAGT--LNEIILANAKLK 251 (406)
Q Consensus 228 ~~p~~l~~l~~~--L~~L~l~~n~l~ 251 (406)
..+..+..+. . ++.|++++|.+.
T Consensus 178 l~~~~~~~l~-~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLP-AWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSC-HHHHTTEECCSSCEE
T ss_pred cCHHHhhhcc-HhhcceEEecCCCcc
Confidence 4434455554 3 366777776664
No 114
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.75 E-value=1.7e-19 Score=184.32 Aligned_cols=268 Identities=13% Similarity=0.099 Sum_probs=155.5
Q ss_pred CCcEEEEECCCCCcccc----CcccccCCCCCCEEEcCCCcCC----ccCCchhhCCcCCceEecccccccccCchhhcC
Q 015481 94 CLTVAGIDLNQANIAGT----LPEKLGLLQDLALFHINSNRFC----GTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLC 165 (406)
Q Consensus 94 ~~~l~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 165 (406)
++++++|+|++|.+++. ++..+..+++|++|++++|.++ +.++..+.++++|++|++++|.+.+ ++..+..
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~ 241 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKA 241 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhh
Confidence 34677777777766544 2333455667777777777765 2333444566777777777776653 4444555
Q ss_pred CCCCcEEEeecCcC--------------------------CCCCchhhhccc-cCeeeccccccccCCC-CCCCC-----
Q 015481 166 LPSLKFLDIRFNQF--------------------------EGEIPSAVFDLK-LDALFLNNNKFTSSLP-NNIGN----- 212 (406)
Q Consensus 166 l~~L~~L~Ls~N~l--------------------------~~~~p~~~~~l~-L~~L~L~~n~l~~~~~-~~~~~----- 212 (406)
+++|++|+++.... .+.+|..+..++ |++|++++|.+++... ..+..
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 55555555542110 123444444555 8888888777543221 11111
Q ss_pred --------------------CCccEEEccc-----------ccCCcCCchhH-HhcccccceeeeccCCCcccChhhhcc
Q 015481 213 --------------------SPVSVLVLAN-----------NNFDSCLPPSL-TKMAGTLNEIILANAKLKGCLLKDIGL 260 (406)
Q Consensus 213 --------------------~~L~~L~l~~-----------n~l~~~~p~~l-~~l~~~L~~L~l~~n~l~~~~~~~l~~ 260 (406)
.+|++|++++ |.+++.....+ ..+. +|++|+++.|++++..+..+..
T Consensus 322 ~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-~L~~L~l~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 322 VLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ-ELEYMAVYVSDITNESLESIGT 400 (592)
T ss_dssp EEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCT-TCSEEEEEESCCCHHHHHHHHH
T ss_pred EEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCc-cCeEEEeecCCccHHHHHHHHh
Confidence 2355666662 34433212222 2233 6777777666666655555544
Q ss_pred -CCCCcEEEee----cCCCCCc-----cchhhcCCCCCCEEeCcCC--cccccCchhhc-CCCCCCEEEeeCCcCCcCC-
Q 015481 261 -LNQVTVFDVS----FNNLVGS-----LPESMGNMKSLEQLNVAHN--NLSGAIPNSIC-CLPKLENFTYSYNFFCTEP- 326 (406)
Q Consensus 261 -l~~L~~L~Ls----~N~l~~~-----~p~~l~~l~~L~~L~Ls~N--~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~- 326 (406)
+++|+.|+++ .|.+++. ++..+.++++|++|+|++| .+++..+..+. .+++|+.|++++|.+++..
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 480 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL 480 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH
Confidence 7777777775 5566642 3444666778888888643 35555444443 4788999999999887622
Q ss_pred ----CcCCCCCeeeCCCCCCCCC--C---CCCCcccccccccCCCC
Q 015481 327 ----LACLKLKVKDDRQNCIPNR--P---FQRSPMECKTFYSHPVD 363 (406)
Q Consensus 327 ----~~~~~L~~L~l~~N~l~~~--p---~~~~~~~~~~~~~np~~ 363 (406)
..+++|+.|++++|.++.. + ...+.++...+.+|.+.
T Consensus 481 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 481 MEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp HHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred HHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 3578899999999987642 2 12344555566666644
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=5.9e-18 Score=148.27 Aligned_cols=154 Identities=18% Similarity=0.243 Sum_probs=96.7
Q ss_pred hhCCcCCceEecccccccccCchhhcCCCCCcEEEeecCcCCCCCchhhhccc-cCeeeccccccccCCCCCCCCCCccE
Q 015481 139 FRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNSPVSV 217 (406)
Q Consensus 139 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~L~~ 217 (406)
.+.+++|++|++++|.++ .+| .+..+++|++|++++|.++ .++ .+..++ |++|++++|.+++..+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~n~l~~~~~---------- 105 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-PISGLSNLERLRIMGKDVTSDKI---------- 105 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-GGTTCTTCCEEEEECTTCBGGGS----------
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-hhhcCCCCCEEEeECCccCcccC----------
Confidence 356777888888888887 445 5777888888888888665 332 344444 5555555555543222
Q ss_pred EEcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCC-CCCccchhhcCCCCCCEEeCcCC
Q 015481 218 LVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNN-LVGSLPESMGNMKSLEQLNVAHN 296 (406)
Q Consensus 218 L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N 296 (406)
..+..+. +|++|++++|++++..+..+..+++|++|+|++|. ++ .+| .+..+++|++|++++|
T Consensus 106 -------------~~l~~l~-~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 106 -------------PNLSGLT-SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFD 169 (197)
T ss_dssp -------------CCCTTCT-TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTB
T ss_pred -------------hhhcCCC-CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCC
Confidence 2333344 66777777777666566666677777777777776 44 455 4666777777777777
Q ss_pred cccccCchhhcCCCCCCEEEeeCCcCCc
Q 015481 297 NLSGAIPNSICCLPKLENFTYSYNFFCT 324 (406)
Q Consensus 297 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 324 (406)
.+++ ++ .+..+++|+.|++++|++.+
T Consensus 170 ~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 170 GVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred CCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 7763 33 56667777777777776643
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=1.1e-17 Score=146.65 Aligned_cols=154 Identities=12% Similarity=0.225 Sum_probs=120.6
Q ss_pred ccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEeecCcCCCCCchhhhccc-cC
Q 015481 115 LGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLK-LD 193 (406)
Q Consensus 115 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-L~ 193 (406)
...+++|++|++++|.++ .+| .+..+++|++|++++|.++. +..+..+++|++|++++|.+++..+..+..++ |+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 367889999999999999 666 68999999999999998863 34789999999999999999976777776665 77
Q ss_pred eeeccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccceeeeccCC-CcccChhhhccCCCCcEEEeecC
Q 015481 194 ALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAK-LKGCLLKDIGLLNQVTVFDVSFN 272 (406)
Q Consensus 194 ~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~N 272 (406)
+|++++|.+++ ..+..+..+. +|++|++++|+ ++. ++ .+..+++|++|++++|
T Consensus 116 ~L~Ls~n~i~~-----------------------~~~~~l~~l~-~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 116 LLDISHSAHDD-----------------------SILTKINTLP-KVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFD 169 (197)
T ss_dssp EEECCSSBCBG-----------------------GGHHHHTTCS-SCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTB
T ss_pred EEEecCCccCc-----------------------HhHHHHhhCC-CCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCC
Confidence 77776666653 3455566666 88888888887 554 44 6788888999999999
Q ss_pred CCCCccchhhcCCCCCCEEeCcCCcccc
Q 015481 273 NLVGSLPESMGNMKSLEQLNVAHNNLSG 300 (406)
Q Consensus 273 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 300 (406)
.+++ ++ .+..+++|++|++++|+|.+
T Consensus 170 ~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 170 GVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred CCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 8884 44 67888899999999988763
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=3.2e-18 Score=157.06 Aligned_cols=107 Identities=24% Similarity=0.224 Sum_probs=86.7
Q ss_pred HHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCC
Q 015481 233 LTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKL 312 (406)
Q Consensus 233 l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 312 (406)
+..+. +|++|++++|++++ ++. +.. ++|+.|+|++|++++ ++ .+..+++|++|+|++|+|++ ++ .+..+++|
T Consensus 81 l~~l~-~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L 152 (263)
T 1xeu_A 81 LKDLT-KLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKL 152 (263)
T ss_dssp GTTCS-SCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTC
T ss_pred hccCC-CCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCC
Confidence 33444 77777777777766 333 223 899999999999995 44 58999999999999999995 44 68899999
Q ss_pred CEEEeeCCcCCcCCC--cCCCCCeeeCCCCCCCCCCC
Q 015481 313 ENFTYSYNFFCTEPL--ACLKLKVKDDRQNCIPNRPF 347 (406)
Q Consensus 313 ~~L~Ls~N~l~~~~~--~~~~L~~L~l~~N~l~~~p~ 347 (406)
+.|++++|.+++... .+.+|+.|++++|.++..|.
T Consensus 153 ~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 153 EVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp CEEECTTSCCCBCTTSTTCCCCCEEEEEEEEEECCCE
T ss_pred CEEECCCCcCcchHHhccCCCCCEEeCCCCcccCCcc
Confidence 999999999998743 57789999999999988873
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=4.6e-18 Score=177.49 Aligned_cols=194 Identities=17% Similarity=0.182 Sum_probs=124.5
Q ss_pred cEEEEECCCCCccc---------cCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCC
Q 015481 96 TVAGIDLNQANIAG---------TLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCL 166 (406)
Q Consensus 96 ~l~~L~L~~n~l~~---------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 166 (406)
.+..++|+.+.+.+ ..++.+..+..|+.|+|++|.+. .+|..+.++++|++|+|++|.|+ .+|..|..+
T Consensus 192 ~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 269 (727)
T 4b8c_D 192 LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNL 269 (727)
T ss_dssp ------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGG
T ss_pred HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCC
Confidence 34455555555433 44677899999999999999999 78888889999999999999999 889999999
Q ss_pred CCCcEEEeecCcCCCCCchhhhccc-cCeeeccccccccCCCCCCCCCC-ccEEEcccccCCcCCchhHHhcccccceee
Q 015481 167 PSLKFLDIRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNSP-VSVLVLANNNFDSCLPPSLTKMAGTLNEII 244 (406)
Q Consensus 167 ~~L~~L~Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~ 244 (406)
++|++|+|++|.|+ .+|..+..+. |++|+|++|.++ .+|..++... |++|+|++|.+++.+|..+......+..|+
T Consensus 270 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~ 347 (727)
T 4b8c_D 270 SNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFY 347 (727)
T ss_dssp TTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHh
Confidence 99999999999999 8899999988 999999999997 7787777755 999999999999988888876543445688
Q ss_pred eccCCCcccChhhhccCCCCcEEEeecC--------CCCCccchhhcCCCCCCEEeCcCCccc
Q 015481 245 LANAKLKGCLLKDIGLLNQVTVFDVSFN--------NLVGSLPESMGNMKSLEQLNVAHNNLS 299 (406)
Q Consensus 245 l~~n~l~~~~~~~l~~l~~L~~L~Ls~N--------~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 299 (406)
+++|.+++.+|.. |+.|+++.| .+.+..+..+..+..++...++.|-+.
T Consensus 348 l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 348 LRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHHCCCCCCCCCC-----------------------------------------------CCC
T ss_pred hccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 9999999877654 556677766 344344444566677777788888764
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=3.7e-17 Score=142.61 Aligned_cols=132 Identities=16% Similarity=0.210 Sum_probs=92.7
Q ss_pred CeeeccccccccCCCCCCCCCCccEEEcccccCCcCCch-hHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeec
Q 015481 193 DALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPP-SLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSF 271 (406)
Q Consensus 193 ~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~-~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 271 (406)
+.+++++|.++ .+|..+.. .+++|++++|.+++..+. .+..+. +|++|++++|++++..|..|..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~-~l~~L~l~~n~i~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL-HTTELLLNDNELGRISSDGLFGRLP-HLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT-TCSEEECCSCCCCSBCCSCSGGGCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC-CCCEEECCCCcCCccCCccccccCC-CCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 34444444443 33333322 456666666666554433 255666 788888888888887777888888888888888
Q ss_pred CCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC
Q 015481 272 NNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL 327 (406)
Q Consensus 272 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~ 327 (406)
|+|++..+..|..+++|++|+|++|+|++.+|..+..+++|++|+|++|.+++..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 88887767778888888888888888887778888888888888888888876543
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=1.8e-16 Score=134.96 Aligned_cols=131 Identities=18% Similarity=0.150 Sum_probs=101.9
Q ss_pred CccEEEcccccCC-cCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEe
Q 015481 214 PVSVLVLANNNFD-SCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLN 292 (406)
Q Consensus 214 ~L~~L~l~~n~l~-~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 292 (406)
.++.|++++|.++ +.+|..+..+. +|++|++++|.+++. ..+..+++|++|+|++|++++.+|..+..+++|++|+
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFV-NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGG-GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cCCEEECCCCCCChhhHHHHHHhCC-CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 3677777777776 45666666676 888888888888774 6777888888888888888876777777788888888
Q ss_pred CcCCccccc-CchhhcCCCCCCEEEeeCCcCCcCCC-------cCCCCCeeeCCCCCCCCCCC
Q 015481 293 VAHNNLSGA-IPNSICCLPKLENFTYSYNFFCTEPL-------ACLKLKVKDDRQNCIPNRPF 347 (406)
Q Consensus 293 Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~~-------~~~~L~~L~l~~N~l~~~p~ 347 (406)
|++|.+++. .+..+..+++|+.|++++|.+++.++ .+++|+.|++++|.+..+|.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 888888743 22677888888888888888887766 46788888888888877763
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=4.5e-16 Score=132.50 Aligned_cols=137 Identities=18% Similarity=0.156 Sum_probs=85.5
Q ss_pred CCCCCEEEcCCCcCC-ccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEeecCcCCCCCchhhhccccCeee
Q 015481 118 LQDLALFHINSNRFC-GTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLKLDALF 196 (406)
Q Consensus 118 l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~L~~L~ 196 (406)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-------- 92 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAE-------- 92 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHH--------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHh--------
Confidence 366777777777776 56666667777777777777777754 5567777777777777777643443332
Q ss_pred ccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccC-hhhhccCCCCcEEEeecCCCC
Q 015481 197 LNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCL-LKDIGLLNQVTVFDVSFNNLV 275 (406)
Q Consensus 197 L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~Ls~N~l~ 275 (406)
.+. +|++|++++|++++.. +..+..+++|++|++++|.++
T Consensus 93 --------------------------------------~l~-~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 93 --------------------------------------KLP-NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp --------------------------------------HCT-TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred --------------------------------------hCC-CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence 233 4555555555554421 145566666777777777776
Q ss_pred Cccc---hhhcCCCCCCEEeCcCCcccccCch
Q 015481 276 GSLP---ESMGNMKSLEQLNVAHNNLSGAIPN 304 (406)
Q Consensus 276 ~~~p---~~l~~l~~L~~L~Ls~N~l~~~~p~ 304 (406)
+..+ ..+..+++|++|++++|.+. .+|.
T Consensus 134 ~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 134 NLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp TSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred chHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 4333 35666777777777777666 4443
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=8.7e-16 Score=133.89 Aligned_cols=129 Identities=20% Similarity=0.328 Sum_probs=95.0
Q ss_pred EEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCc-hhhCCcCCceEecccccccccCchhhcCCCCCcEEEeec
Q 015481 98 AGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPD-SFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRF 176 (406)
Q Consensus 98 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 176 (406)
+.+++++++++ .+|..+.. +|++|++++|.+++..+. .|+.+++|++|+|++|+|++..|..|..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45667777775 56665543 788888888888865554 478888888888888888887788888888888888888
Q ss_pred CcCCCCCchhhhccc-cCeeeccccccccCCCCCCCCCC-ccEEEcccccCCcCC
Q 015481 177 NQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNSP-VSVLVLANNNFDSCL 229 (406)
Q Consensus 177 N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~ 229 (406)
|++++..+..+..++ |++|++++|++++..|..+.... |++|++++|.+.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 888866666666666 88888888887776666665443 666666666666543
No 123
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.64 E-value=2.4e-17 Score=168.25 Aligned_cols=200 Identities=14% Similarity=0.052 Sum_probs=123.3
Q ss_pred CCcCCceEecccccccccCc-hhhcCCCCCcEEEeecCcCCCC-Cchhhhccc-cCeeeccc---------cccccCCCC
Q 015481 141 NMQLLFELDVSNNQFSGCFP-SVVLCLPSLKFLDIRFNQFEGE-IPSAVFDLK-LDALFLNN---------NKFTSSLPN 208 (406)
Q Consensus 141 ~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~-L~~L~L~~---------n~l~~~~~~ 208 (406)
.+++|++|++++|.+++... ..+..+++|++|++++| +... ++.....++ |++|++.. +.+++....
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 45666666666666553322 22446667777777766 3311 122222234 77777633 233221111
Q ss_pred CC--CCCCccEEEcccccCCcCCchhHHh-cccccceeeec--c----CCCccc-----ChhhhccCCCCcEEEeecCCC
Q 015481 209 NI--GNSPVSVLVLANNNFDSCLPPSLTK-MAGTLNEIILA--N----AKLKGC-----LLKDIGLLNQVTVFDVSFNNL 274 (406)
Q Consensus 209 ~~--~~~~L~~L~l~~n~l~~~~p~~l~~-l~~~L~~L~l~--~----n~l~~~-----~~~~l~~l~~L~~L~Ls~N~l 274 (406)
.+ ...+|+.|.+..|.+++.....+.. ++ +|++|+++ + +++++. ++..+..+++|+.|+|++ .+
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~-~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l 443 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRP-NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LL 443 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCT-TCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SC
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCC-CcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cc
Confidence 11 1244777877777777655555553 44 88888888 3 455521 223356778888888876 66
Q ss_pred CCccchhhcC-CCCCCEEeCcCCcccccCchhh-cCCCCCCEEEeeCCcCCcCCC-----cCCCCCeeeCCCCCCC
Q 015481 275 VGSLPESMGN-MKSLEQLNVAHNNLSGAIPNSI-CCLPKLENFTYSYNFFCTEPL-----ACLKLKVKDDRQNCIP 343 (406)
Q Consensus 275 ~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~~-----~~~~L~~L~l~~N~l~ 343 (406)
++..+..+.. +++|++|+|++|.+++..+..+ ..+++|++|+|++|.+++... .+++|+.|++++|.++
T Consensus 444 ~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 444 TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred cHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 6555555554 7889999999998876655555 668889999999998854322 4678999999988774
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=2.6e-15 Score=131.02 Aligned_cols=107 Identities=23% Similarity=0.305 Sum_probs=53.2
Q ss_pred ccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCc
Q 015481 215 VSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVA 294 (406)
Q Consensus 215 L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 294 (406)
+++|++++|.++ .+|..+..+. +|++|++++|++++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|+
T Consensus 33 l~~L~L~~n~i~-~ip~~~~~l~-~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 33 VTELYLDGNQFT-LVPKELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp CCEEECCSSCCC-SCCGGGGGCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCc-hhHHHhhccc-CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 444444444443 2444444444 55555555555555444445555555555555555554444445555555555555
Q ss_pred CCcccccCchhhcCCCCCCEEEeeCCcCC
Q 015481 295 HNNLSGAIPNSICCLPKLENFTYSYNFFC 323 (406)
Q Consensus 295 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 323 (406)
+|+|++..+..|..+++|+.|++++|.+.
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 55555333333445555555555555443
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=2e-15 Score=131.71 Aligned_cols=124 Identities=20% Similarity=0.208 Sum_probs=107.0
Q ss_pred cEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcC
Q 015481 216 SVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAH 295 (406)
Q Consensus 216 ~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 295 (406)
+++++++|.++. +|..+. .+|++|++++|+++. +|..+..+++|++|+|++|+|++..+..|..+++|++|+|++
T Consensus 13 ~~l~~~~~~l~~-ip~~~~---~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGIP---RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSS-CCSCCC---TTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCCc-CCCCCC---CCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 567777777764 665543 389999999999985 678999999999999999999977778899999999999999
Q ss_pred CcccccCchhhcCCCCCCEEEeeCCcCCcCCC----cCCCCCeeeCCCCCCCC
Q 015481 296 NNLSGAIPNSICCLPKLENFTYSYNFFCTEPL----ACLKLKVKDDRQNCIPN 344 (406)
Q Consensus 296 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~L~~L~l~~N~l~~ 344 (406)
|+|++..+..|..+++|+.|+|++|.|+++++ .+.+|+.|++++|.+..
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 99998778889999999999999999998877 35689999999997753
No 126
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.61 E-value=1.7e-16 Score=161.96 Aligned_cols=123 Identities=15% Similarity=0.151 Sum_probs=79.0
Q ss_pred ccceeeeccCCCcccChhhhc-cCCCCcEEEee--c----CCCCC-----ccchhhcCCCCCCEEeCcCCcccccCchhh
Q 015481 239 TLNEIILANAKLKGCLLKDIG-LLNQVTVFDVS--F----NNLVG-----SLPESMGNMKSLEQLNVAHNNLSGAIPNSI 306 (406)
Q Consensus 239 ~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~Ls--~----N~l~~-----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 306 (406)
+|++|.+..|++++.....+. .+++|+.|+|+ + +.+++ .++..+..+++|++|+|++ .+++..+..+
T Consensus 373 ~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l 451 (594)
T 2p1m_B 373 KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYI 451 (594)
T ss_dssp TCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHH
T ss_pred hHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHH
Confidence 566666666666554444443 47778888887 3 45542 1222356677888888876 6665555555
Q ss_pred cC-CCCCCEEEeeCCcCCcCCC-----cCCCCCeeeCCCCCCCCCC-----CCCCcccccccccCCC
Q 015481 307 CC-LPKLENFTYSYNFFCTEPL-----ACLKLKVKDDRQNCIPNRP-----FQRSPMECKTFYSHPV 362 (406)
Q Consensus 307 ~~-l~~L~~L~Ls~N~l~~~~~-----~~~~L~~L~l~~N~l~~~p-----~~~~~~~~~~~~~np~ 362 (406)
.. +++|+.|+|++|.+++... .+++|+.|++++|.++... ...+.++...+.+++.
T Consensus 452 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 452 GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 54 8899999999999876433 4789999999999985432 1123444455555554
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=4.6e-15 Score=127.34 Aligned_cols=107 Identities=17% Similarity=0.100 Sum_probs=56.4
Q ss_pred ccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEee
Q 015481 239 TLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYS 318 (406)
Q Consensus 239 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 318 (406)
+|++|++++|++++..+..+..+++|++|+|++|++++..+..+..+++|++|++++|+|++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 55555555555555444444555555555555555553333444555555555555555554444444555555555555
Q ss_pred CCcCCcCCCc----CCCCCeeeCCCCCCCCC
Q 015481 319 YNFFCTEPLA----CLKLKVKDDRQNCIPNR 345 (406)
Q Consensus 319 ~N~l~~~~~~----~~~L~~L~l~~N~l~~~ 345 (406)
+|.+++.++. +.+|+.|++++|.++..
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 5555554441 33455555555555443
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=5.7e-15 Score=126.80 Aligned_cols=132 Identities=18% Similarity=0.195 Sum_probs=99.8
Q ss_pred CeeeccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecC
Q 015481 193 DALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFN 272 (406)
Q Consensus 193 ~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N 272 (406)
+.+++++|+++ .+|..+. ..++.|++++|.+++..+..+..+. +|++|++++|++++..+..+..+++|++|+|++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGIP-SSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTCC-TTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCCC-CCCcEEEeCCCcccEeCHHHhcCcc-cccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 44455555544 2332222 3467777777777654444456666 8999999999998876777889999999999999
Q ss_pred CCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC
Q 015481 273 NLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL 327 (406)
Q Consensus 273 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~ 327 (406)
++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9997666678899999999999999995555556889999999999999987654
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=1.1e-15 Score=127.29 Aligned_cols=121 Identities=19% Similarity=0.162 Sum_probs=64.3
Q ss_pred ccEEEcccccCC-cCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeC
Q 015481 215 VSVLVLANNNFD-SCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNV 293 (406)
Q Consensus 215 L~~L~l~~n~l~-~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 293 (406)
++.|++++|.++ +.+|..+..+. +|++|++++|++++. ..+..+++|++|+|++|.+++.+|..+..+++|++|++
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFE-ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCT-TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred CeEEEccCCcCChhHHHHHHhhcC-CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 444444444443 33444344444 555555555555553 44555556666666666665445555555566666666
Q ss_pred cCCccccc-CchhhcCCCCCCEEEeeCCcCCcCCC-------cCCCCCeeeCC
Q 015481 294 AHNNLSGA-IPNSICCLPKLENFTYSYNFFCTEPL-------ACLKLKVKDDR 338 (406)
Q Consensus 294 s~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~~-------~~~~L~~L~l~ 338 (406)
++|.+++. .+..+..+++|++|++++|.+++.++ .+++|+.|+++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 66665532 22455556666666666666655544 24455555554
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.60 E-value=6e-17 Score=141.93 Aligned_cols=83 Identities=16% Similarity=0.251 Sum_probs=45.6
Q ss_pred CCCCCCEEEcCCCcCCccCCc------hhhCCcCCceEecccccccccCchhhcCCCCCcEEEeecCcCCCCCchhhhcc
Q 015481 117 LLQDLALFHINSNRFCGTIPD------SFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDL 190 (406)
Q Consensus 117 ~l~~L~~L~L~~n~l~~~~p~------~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 190 (406)
....++.++++.+.+++.+|. .|..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~ 92 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA 92 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence 344555555555555554444 56666666666666666664 44 5566666666666666665 444443333
Q ss_pred c-cCeeecccccc
Q 015481 191 K-LDALFLNNNKF 202 (406)
Q Consensus 191 ~-L~~L~L~~n~l 202 (406)
+ |++|++++|++
T Consensus 93 ~~L~~L~L~~N~l 105 (198)
T 1ds9_A 93 DTLEELWISYNQI 105 (198)
T ss_dssp HHCSEEEEEEEEC
T ss_pred CcCCEEECcCCcC
Confidence 3 44444444433
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.60 E-value=8.9e-17 Score=140.84 Aligned_cols=155 Identities=20% Similarity=0.256 Sum_probs=111.2
Q ss_pred hhCCcCCceEecccccccccCch------hhcCCCCCcEEEeecCcCCCCCchhhhccc-cCeeeccccccccCCCCCCC
Q 015481 139 FRNMQLLFELDVSNNQFSGCFPS------VVLCLPSLKFLDIRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIG 211 (406)
Q Consensus 139 ~~~l~~L~~L~Ls~N~l~~~~p~------~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~ 211 (406)
+.....++.++++.+.+++..|. .+..+++|++|++++|.+++ +| .+..++ |++|++++|.++ .
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~------ 84 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-K------ 84 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-S------
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-c------
Confidence 56667888888888888887776 78888899999999988884 66 566655 777777777665 2
Q ss_pred CCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccc-hhhcCCCCCCE
Q 015481 212 NSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLP-ESMGNMKSLEQ 290 (406)
Q Consensus 212 ~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~ 290 (406)
+|..+..+. +|++|++++|++++ ++ .+..+++|++|+|++|++++..+ ..+..+++|++
T Consensus 85 -----------------l~~~~~~~~-~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~ 144 (198)
T 1ds9_A 85 -----------------IENLDAVAD-TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLED 144 (198)
T ss_dssp -----------------CSSHHHHHH-HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSE
T ss_pred -----------------ccchhhcCC-cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCE
Confidence 444455555 78888888887776 34 57777788888888888873222 36777888888
Q ss_pred EeCcCCcccccCchh----------hcCCCCCCEEEeeCCcCCc
Q 015481 291 LNVAHNNLSGAIPNS----------ICCLPKLENFTYSYNFFCT 324 (406)
Q Consensus 291 L~Ls~N~l~~~~p~~----------l~~l~~L~~L~Ls~N~l~~ 324 (406)
|++++|.+.+.+|.. +..+++|+.|| +|.++.
T Consensus 145 L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 145 LLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp EEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred EEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 888888877655442 56777777776 555544
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=3e-15 Score=124.68 Aligned_cols=127 Identities=19% Similarity=0.212 Sum_probs=86.2
Q ss_pred CCCcEEEeecCcCC-CCCchhhhccc-cCeeeccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccceee
Q 015481 167 PSLKFLDIRFNQFE-GEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEII 244 (406)
Q Consensus 167 ~~L~~L~Ls~N~l~-~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~ 244 (406)
++|+.|++++|.++ +.+|..+..++ |++|++++|.++ +. ..+..+. +|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-----------------------~~--~~~~~l~-~L~~L~ 70 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-----------------------SI--ANLPKLN-KLKKLE 70 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-----------------------CC--TTCCCCT-TCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-----------------------Cc--hhhhcCC-CCCEEE
Confidence 55666666666665 45555444444 555555555554 32 3344455 778888
Q ss_pred eccCCCcccChhhhccCCCCcEEEeecCCCCCc-cchhhcCCCCCCEEeCcCCcccccCc---hhhcCCCCCCEEEeeC
Q 015481 245 LANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGS-LPESMGNMKSLEQLNVAHNNLSGAIP---NSICCLPKLENFTYSY 319 (406)
Q Consensus 245 l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls~ 319 (406)
+++|++++.+|..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 71 Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 71 LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 888888776777777788888888888888752 33677888888888888888885544 4677888888888763
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=6.5e-15 Score=139.37 Aligned_cols=223 Identities=11% Similarity=0.000 Sum_probs=116.8
Q ss_pred CCcEEEEECCCCCcc--ccCcccccCCCCCCEEEcCCCcCCccCCchhhC--------CcCCceEecccccccccCchhh
Q 015481 94 CLTVAGIDLNQANIA--GTLPEKLGLLQDLALFHINSNRFCGTIPDSFRN--------MQLLFELDVSNNQFSGCFPSVV 163 (406)
Q Consensus 94 ~~~l~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~--------l~~L~~L~Ls~N~l~~~~p~~l 163 (406)
+++|+.|||++|++. ......+ +.++.+.+..|.|. ...|.+ +++|++|+|.+ .++.+....|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFVP---AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEEC---TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred hccCeEEecCcceeEEecCccccc---cccccccccccccC---HHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 357999999999887 2222222 22444555555332 234556 78888888887 7776666677
Q ss_pred cCCCCCcEEEeecCcCCCCCchh-hhccc-cCeeecccccc----ccCCCCCCC--------------------------
Q 015481 164 LCLPSLKFLDIRFNQFEGEIPSA-VFDLK-LDALFLNNNKF----TSSLPNNIG-------------------------- 211 (406)
Q Consensus 164 ~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~-L~~L~L~~n~l----~~~~~~~~~-------------------------- 211 (406)
.++++|+.|++++|.+. .++.. +.... +..+.+..+.. .......+.
T Consensus 121 ~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~ 199 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGL 199 (329)
T ss_dssp TTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTC
T ss_pred hcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhccc
Confidence 88888888888888776 34333 33322 44444433211 000001110
Q ss_pred -CCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCC-
Q 015481 212 -NSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLE- 289 (406)
Q Consensus 212 -~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~- 289 (406)
...+..+.+.++-. ......+.....+|+.+++++|+++......|.++.+|+.|+|++| ++..-+..|.++.+|+
T Consensus 200 ~~~~~~~l~~~~~l~-~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~ 277 (329)
T 3sb4_A 200 QPRDINFLTIEGKLD-NADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAG 277 (329)
T ss_dssp CGGGCSEEEEEECCC-HHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred CccccceEEEeeeec-HHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccE
Confidence 01122333322211 1011111111125666666666666544555666666666666665 5433444566666666
Q ss_pred EEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC
Q 015481 290 QLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL 327 (406)
Q Consensus 290 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~ 327 (406)
.+++.+ .++..-+..|.++++|+.++++.|.++.+..
T Consensus 278 ~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 278 TLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD 314 (329)
T ss_dssp EEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred EEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch
Confidence 666665 4543444556666666666666666655544
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=1.2e-14 Score=124.67 Aligned_cols=125 Identities=14% Similarity=0.138 Sum_probs=77.9
Q ss_pred CccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeC
Q 015481 214 PVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNV 293 (406)
Q Consensus 214 ~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 293 (406)
.++.|++++|.++. ++. +....++|++|++++|++++. ..+..+++|++|+|++|++++..+..+..+++|++|+|
T Consensus 20 ~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 20 RDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp SCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 35566666666553 332 333333677777777777663 45666777777777777776433344466777777777
Q ss_pred cCCcccccCch--hhcCCCCCCEEEeeCCcCCcCCC-------cCCCCCeeeCCCCCCC
Q 015481 294 AHNNLSGAIPN--SICCLPKLENFTYSYNFFCTEPL-------ACLKLKVKDDRQNCIP 343 (406)
Q Consensus 294 s~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~~-------~~~~L~~L~l~~N~l~ 343 (406)
++|+|+ .+|. .+..+++|+.|++++|.++..+. .+++|+.||+++|.+.
T Consensus 96 ~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 96 TNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 777775 4554 56667777777777777765544 3566777777766543
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=1.1e-14 Score=125.00 Aligned_cols=133 Identities=17% Similarity=0.183 Sum_probs=85.7
Q ss_pred hhcCCCCCcEEEeecCcCCCCCchhhhcc-ccCeeeccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhccccc
Q 015481 162 VVLCLPSLKFLDIRFNQFEGEIPSAVFDL-KLDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTL 240 (406)
Q Consensus 162 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L 240 (406)
.+..+.+|++|++++|.++ .++...... .|++|++++|.+++. .. +..+. +|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~-----------------------l~~l~-~L 66 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DG-----------------------FPLLR-RL 66 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CC-----------------------CCCCS-SC
T ss_pred hcCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cc-----------------------cccCC-CC
Confidence 3567888999999999988 566543444 377777777777642 22 22333 66
Q ss_pred ceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccch--hhcCCCCCCEEeCcCCcccccCchh----hcCCCCCCE
Q 015481 241 NEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPE--SMGNMKSLEQLNVAHNNLSGAIPNS----ICCLPKLEN 314 (406)
Q Consensus 241 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~ 314 (406)
++|++++|++++..+..+..+++|++|+|++|+++ .+|. .+..+++|++|++++|.++ .+|.. +..+++|+.
T Consensus 67 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~ 144 (176)
T 1a9n_A 67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRV 144 (176)
T ss_dssp CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSE
T ss_pred CEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccce
Confidence 66666666666543344466667777777777765 4554 5666677777777777776 44543 666777777
Q ss_pred EEeeCCcCC
Q 015481 315 FTYSYNFFC 323 (406)
Q Consensus 315 L~Ls~N~l~ 323 (406)
||+++|.+.
T Consensus 145 Ld~~~n~~~ 153 (176)
T 1a9n_A 145 LDFQKVKLK 153 (176)
T ss_dssp ETTEECCHH
T ss_pred eCCCcCCHH
Confidence 777776554
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=7.8e-14 Score=118.97 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=81.5
Q ss_pred ccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCc
Q 015481 215 VSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVA 294 (406)
Q Consensus 215 L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 294 (406)
.+.+++++|.++. +|..+. . +|++|++++|++++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|+
T Consensus 11 ~~~l~~s~n~l~~-ip~~~~--~-~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGIP--T-TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSS-CCSCCC--T-TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCc-cCccCC--C-CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4556666666654 554443 2 78888888888888777778888888888888888886656667888888888888
Q ss_pred CCcccccCchhhcCCCCCCEEEeeCCcCCcCCC
Q 015481 295 HNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL 327 (406)
Q Consensus 295 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~ 327 (406)
+|+|++..+..|..+++|+.|+|++|.++...+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 888886555567888888888888888876543
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=1.9e-13 Score=117.02 Aligned_cols=108 Identities=16% Similarity=0.151 Sum_probs=81.0
Q ss_pred cEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcC
Q 015481 216 SVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAH 295 (406)
Q Consensus 216 ~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 295 (406)
+.+++++|.+.. +|..+. . +|++|++++|++++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++
T Consensus 15 ~~l~~~~n~l~~-iP~~~~--~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLAS-VPAGIP--T-DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSS-CCSCCC--T-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCc-cCCCcC--C-CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 556666666643 555443 2 788888888888887777888888888888888888855555567888888888888
Q ss_pred CcccccCchhhcCCCCCCEEEeeCCcCCcCCC
Q 015481 296 NNLSGAIPNSICCLPKLENFTYSYNFFCTEPL 327 (406)
Q Consensus 296 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~ 327 (406)
|+|++..+..|..+++|+.|+|++|.+.....
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 88885444457888888888888888876543
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.45 E-value=2.1e-13 Score=128.95 Aligned_cols=242 Identities=11% Similarity=0.056 Sum_probs=158.5
Q ss_pred CcEEEEECCCCCccccCcccccC-CCCCCEEEcCCCcCC--ccCCchhhCCcCCceEecccccccccCchhhcC------
Q 015481 95 LTVAGIDLNQANIAGTLPEKLGL-LQDLALFHINSNRFC--GTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLC------ 165 (406)
Q Consensus 95 ~~l~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~------ 165 (406)
.++++|.++++ +...--..+.. +++|+.|||++|++. ..... .++.++.+.+..|.|. ...|.+
T Consensus 25 ~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I~---~~aF~~~~~~~~ 97 (329)
T 3sb4_A 25 NSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFVP---AYAFSNVVNGVT 97 (329)
T ss_dssp HHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEEC---TTTTEEEETTEE
T ss_pred CceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccccC---HHHhcccccccc
Confidence 46778887753 22111122333 789999999999988 22222 2333566666666543 355667
Q ss_pred --CCCCcEEEeecCcCCCCCchhhhccc-cCeeeccccccccCCCCCCCCCC-ccEEEcccccC-------C--------
Q 015481 166 --LPSLKFLDIRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNSP-VSVLVLANNNF-------D-------- 226 (406)
Q Consensus 166 --l~~L~~L~Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~-L~~L~l~~n~l-------~-------- 226 (406)
+++|+.|+|.+ .++..-+..+..+. |+.|++.+|.+....+..|.... +..+....+.. .
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 99999999999 88733344566676 99999999998755555555432 44444333110 0
Q ss_pred -----------cCCchhHHhc---ccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEe
Q 015481 227 -----------SCLPPSLTKM---AGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLN 292 (406)
Q Consensus 227 -----------~~~p~~l~~l---~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 292 (406)
+.++..+... ..+++.+.+.++-...........+++|+.|+|++|+++......|.++++|++|+
T Consensus 177 ~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 177 PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred ccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence 0111111111 11445555544422111111122489999999999999955556799999999999
Q ss_pred CcCCcccccCchhhcCCCCCC-EEEeeCCcCCcCCC----cCCCCCeeeCCCCCCCCCC
Q 015481 293 VAHNNLSGAIPNSICCLPKLE-NFTYSYNFFCTEPL----ACLKLKVKDDRQNCIPNRP 346 (406)
Q Consensus 293 Ls~N~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~~----~~~~L~~L~l~~N~l~~~p 346 (406)
|.+| ++..-+..|.++.+|+ .+++.+ .++.+.+ .|.+|+.+++++|.++.++
T Consensus 257 l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~ 313 (329)
T 3sb4_A 257 LPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLG 313 (329)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEEC
T ss_pred CCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccc
Confidence 9998 7756677899999999 999998 7766655 5778999999999998886
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=3.7e-13 Score=114.71 Aligned_cols=103 Identities=24% Similarity=0.317 Sum_probs=75.2
Q ss_pred EEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEeecC
Q 015481 98 AGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFN 177 (406)
Q Consensus 98 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 177 (406)
+.+++++|.++ .+|..+. ++|++|+|++|.|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 45677777776 4565553 77888888888888777777888888888888888888666666778888888888888
Q ss_pred cCCCCCchhhhccc-cCeeeccccccc
Q 015481 178 QFEGEIPSAVFDLK-LDALFLNNNKFT 203 (406)
Q Consensus 178 ~l~~~~p~~~~~l~-L~~L~L~~n~l~ 203 (406)
+|++..+..+..++ |++|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 88744444455555 666666666665
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.42 E-value=5.7e-12 Score=122.24 Aligned_cols=237 Identities=9% Similarity=0.074 Sum_probs=174.7
Q ss_pred cEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEee
Q 015481 96 TVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIR 175 (406)
Q Consensus 96 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 175 (406)
.++.+.+.. .++..-..+|.+. +|+.+++..+ ++..-..+|.+. +|+.+.+.. .++......|.++.+|+.++++
T Consensus 114 ~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~ 188 (401)
T 4fdw_A 114 GYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLS 188 (401)
T ss_dssp SCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECT
T ss_pred CccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecC
Confidence 344444543 3443444567764 7999999876 665555678774 799999986 6776667889999999999999
Q ss_pred cCcCCCCCchhhhccc-cCeeeccccccccCCCCCCCCC-CccEEEcccccCCcCCchhHHhcccccceeeeccCCCccc
Q 015481 176 FNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNS-PVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGC 253 (406)
Q Consensus 176 ~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~ 253 (406)
.|.++ .++...+... |+.+.+..+ ++......|... .|+.+++..+ ++. ++...+.-. +|+.+.+ .++++..
T Consensus 189 ~n~l~-~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~-I~~~aF~~~-~L~~i~l-p~~i~~I 262 (401)
T 4fdw_A 189 KTKIT-KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VST-IGQEAFRES-GITTVKL-PNGVTNI 262 (401)
T ss_dssp TSCCS-EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCE-ECTTTTTTC-CCSEEEE-ETTCCEE
T ss_pred CCcce-EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccC-ccccccccC-CccEEEe-CCCccEE
Confidence 99998 6666555555 999999854 554445556555 4999999875 433 444444445 8999999 4557666
Q ss_pred ChhhhccCCCCcEEEeecCCCC-----CccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC-
Q 015481 254 LLKDIGLLNQVTVFDVSFNNLV-----GSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL- 327 (406)
Q Consensus 254 ~~~~l~~l~~L~~L~Ls~N~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~- 327 (406)
....|.++++|+.+++.+|.+. ......|.++++|+.+.|.+ .++..-...|.++.+|+.++|..| ++.+..
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~ 340 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFS 340 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHH
Confidence 6778999999999999998775 34456789999999999994 577566678899999999999665 555444
Q ss_pred ---cCCCCCeeeCCCCCCCCCC
Q 015481 328 ---ACLKLKVKDDRQNCIPNRP 346 (406)
Q Consensus 328 ---~~~~L~~L~l~~N~l~~~p 346 (406)
.+ +|+.+++.+|.+..++
T Consensus 341 aF~~~-~L~~l~l~~n~~~~l~ 361 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGTTPPQVF 361 (401)
T ss_dssp SSSSS-CCCEEEECCSSCCBCC
T ss_pred hCCCC-CCCEEEEcCCCCcccc
Confidence 46 8999999999776654
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=8.1e-13 Score=113.09 Aligned_cols=103 Identities=22% Similarity=0.309 Sum_probs=82.2
Q ss_pred EEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEeecC
Q 015481 98 AGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFN 177 (406)
Q Consensus 98 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 177 (406)
+.++++++.+. .+|..+. ++|++|++++|.|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 57888888886 6776664 88999999999999877888999999999999999998766666788999999999999
Q ss_pred cCCCCCchhhhccc-cCeeeccccccc
Q 015481 178 QFEGEIPSAVFDLK-LDALFLNNNKFT 203 (406)
Q Consensus 178 ~l~~~~p~~~~~l~-L~~L~L~~n~l~ 203 (406)
+|++..+..+..++ |++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 99843333465565 777777777665
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.40 E-value=7.6e-12 Score=121.36 Aligned_cols=221 Identities=10% Similarity=0.041 Sum_probs=169.7
Q ss_pred cEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEee
Q 015481 96 TVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIR 175 (406)
Q Consensus 96 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 175 (406)
+++.+.+..+ ++..-..+|.+ .+|+.+.+.+ .++..-...|.++.+|+.+++++|.++......|. ..+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 6888898766 66555667877 4799999986 67755667899999999999999999865556665 6899999998
Q ss_pred cCcCCCCCchhhhccc-cCeeeccccccccCCCCCCCCCCccEEEcccccCCcCCchhHHhcccccceeeeccCCCc---
Q 015481 176 FNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNSPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLK--- 251 (406)
Q Consensus 176 ~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~--- 251 (406)
.+ ++..-...+..+. |+.+.+..+ ++..-...|....|+.+.+ .+.+...-...+..+. +|+.+++.+|.+.
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~-~L~~l~l~~~~~~~~~ 287 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYCP-ELAEVTTYGSTFNDDP 287 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTCT-TCCEEEEESSCCCCCT
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEe-CCCccEEChhHhhCCC-CCCEEEeCCccccCCc
Confidence 54 6623344556665 999999875 4444455666677999999 4456553345566666 9999999998775
Q ss_pred --ccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC
Q 015481 252 --GCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL 327 (406)
Q Consensus 252 --~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~ 327 (406)
......|.++++|+.++|. +.++..-...|.++++|+.+.|..| ++..-..+|.++ +|+.+++++|.+.....
T Consensus 288 ~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~ 362 (401)
T 4fdw_A 288 EAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFE 362 (401)
T ss_dssp TCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCC
T ss_pred ccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccc
Confidence 3456688999999999999 5577555678999999999999665 665566788888 99999999998876554
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.34 E-value=3.4e-12 Score=121.35 Aligned_cols=96 Identities=21% Similarity=0.247 Sum_probs=67.2
Q ss_pred CccccCcccccCCCCCCEEEcCC-CcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEeecCcCCCCCc
Q 015481 106 NIAGTLPEKLGLLQDLALFHINS-NRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIP 184 (406)
Q Consensus 106 ~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 184 (406)
+++ .+|. |..+++|++|+|++ |.|++..+..|+++++|++|+|++|+|++..|..|..+++|++|+|++|+|++..+
T Consensus 20 ~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 97 (347)
T 2ifg_A 20 ALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW 97 (347)
T ss_dssp CCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred CCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCH
Confidence 455 3666 77777788888875 77776666677778888888888888877777777778888888888887773333
Q ss_pred hhhhccccCeeeccccccc
Q 015481 185 SAVFDLKLDALFLNNNKFT 203 (406)
Q Consensus 185 ~~~~~l~L~~L~L~~n~l~ 203 (406)
..+..+.|+.|+|.+|.+.
T Consensus 98 ~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 98 KTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp TTTCSCCCCEEECCSSCCC
T ss_pred HHcccCCceEEEeeCCCcc
Confidence 3333344777777776665
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.33 E-value=8e-14 Score=133.99 Aligned_cols=63 Identities=22% Similarity=0.293 Sum_probs=32.4
Q ss_pred ccceeeeccCCCccc----ChhhhccCCCCcEEEeecCCCCCc----cchhhcCCCCCCEEeCcCCccccc
Q 015481 239 TLNEIILANAKLKGC----LLKDIGLLNQVTVFDVSFNNLVGS----LPESMGNMKSLEQLNVAHNNLSGA 301 (406)
Q Consensus 239 ~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ 301 (406)
+|++|+|++|.+++. +...+...++|++|+|++|.|++. +...+...++|++|+|++|.|++.
T Consensus 184 ~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 555666666555432 133344455566666666665532 223333445566666666655543
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.30 E-value=8.7e-12 Score=118.55 Aligned_cols=104 Identities=22% Similarity=0.250 Sum_probs=69.0
Q ss_pred EEEcccc-cCCcCCchhHHhcccccceeeecc-CCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCc
Q 015481 217 VLVLANN-NFDSCLPPSLTKMAGTLNEIILAN-AKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVA 294 (406)
Q Consensus 217 ~L~l~~n-~l~~~~p~~l~~l~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 294 (406)
.++++++ .+++ +|. +..+. +|++|+|++ |++++..+..|..+++|+.|+|++|+|++..|..|.++++|++|+|+
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~-~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCCc-cCC-CCCCC-CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4566666 6654 666 66655 677777775 77777666667777777777777777776666667777777777777
Q ss_pred CCcccccCchhhcCCCCCCEEEeeCCcCCc
Q 015481 295 HNNLSGAIPNSICCLPKLENFTYSYNFFCT 324 (406)
Q Consensus 295 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 324 (406)
+|+|++..+..+..++ |+.|+|.+|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 7777744444444444 7777777777664
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=4.3e-13 Score=128.91 Aligned_cols=159 Identities=19% Similarity=0.203 Sum_probs=99.2
Q ss_pred CCCCcEEEeecCcCCCCCchhhhcc------ccCeeeccccccccCCCCCCCC--CCccEEEcccccCCcCCchhHHhc-
Q 015481 166 LPSLKFLDIRFNQFEGEIPSAVFDL------KLDALFLNNNKFTSSLPNNIGN--SPVSVLVLANNNFDSCLPPSLTKM- 236 (406)
Q Consensus 166 l~~L~~L~Ls~N~l~~~~p~~~~~l------~L~~L~L~~n~l~~~~~~~~~~--~~L~~L~l~~n~l~~~~p~~l~~l- 236 (406)
++.|++|+|++|.++......+... .|++|+|++|.++......+.. .+++.|++++|.++......+...
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4679999999999874433333332 3888888888775432222211 247777777777765433333221
Q ss_pred ---ccccceeeeccCCCccc----ChhhhccCCCCcEEEeecCCCCCc----cchhhcCCCCCCEEeCcCCccccc----
Q 015481 237 ---AGTLNEIILANAKLKGC----LLKDIGLLNQVTVFDVSFNNLVGS----LPESMGNMKSLEQLNVAHNNLSGA---- 301 (406)
Q Consensus 237 ---~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~---- 301 (406)
..+|++|+|++|.++.. +...+...++|++|+|++|.|++. +...+...++|++|+|++|.|++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 12677777777777642 233445677777777777777642 244556667777777777777643
Q ss_pred CchhhcCCCCCCEEEeeCCcCCc
Q 015481 302 IPNSICCLPKLENFTYSYNFFCT 324 (406)
Q Consensus 302 ~p~~l~~l~~L~~L~Ls~N~l~~ 324 (406)
+...+...++|++|+|++|.|+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhCCCCCEEeccCCCCCH
Confidence 33344556777777777777764
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.99 E-value=5.1e-10 Score=106.75 Aligned_cols=204 Identities=17% Similarity=0.223 Sum_probs=118.8
Q ss_pred CCcEEEEECCCCCccc-c-------CcccccCCCCCCEEEcCCCcCC---------ccCCchhhCCcCCceEeccccccc
Q 015481 94 CLTVAGIDLNQANIAG-T-------LPEKLGLLQDLALFHINSNRFC---------GTIPDSFRNMQLLFELDVSNNQFS 156 (406)
Q Consensus 94 ~~~l~~L~L~~n~l~~-~-------~p~~l~~l~~L~~L~L~~n~l~---------~~~p~~~~~l~~L~~L~Ls~N~l~ 156 (406)
..+++.|.+......+ . +..++..+++|+.|.+.+.... +.+...+..+++|+.|+|++|.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 3467777777555432 1 1233556778888888664331 123345566778888888776311
Q ss_pred ccCchhhcCCCCCcEEEeecCcCCCCCchhhh--ccc-cCeeeccc--cccccCCCCCCCCCCccEEEcccccCCcCCch
Q 015481 157 GCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVF--DLK-LDALFLNN--NKFTSSLPNNIGNSPVSVLVLANNNFDSCLPP 231 (406)
Q Consensus 157 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~-L~~L~L~~--n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~ 231 (406)
.++. + .+++|+.|+|..+.+.......+. .++ |++|+|+. |...+.. . + . .+..
T Consensus 186 -~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~-~-~---------------~-~l~~ 244 (362)
T 2ra8_A 186 -SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG-D-M---------------N-VFRP 244 (362)
T ss_dssp -BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS-C-G---------------G-GTGG
T ss_pred -eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch-h-H---------------H-HHHH
Confidence 2222 3 367888888887776533333333 334 77776642 2211110 0 0 0 0000
Q ss_pred hH--HhcccccceeeeccCCCcccChhhhc---cCCCCcEEEeecCCCCCc----cchhhcCCCCCCEEeCcCCcccccC
Q 015481 232 SL--TKMAGTLNEIILANAKLKGCLLKDIG---LLNQVTVFDVSFNNLVGS----LPESMGNMKSLEQLNVAHNNLSGAI 302 (406)
Q Consensus 232 ~l--~~l~~~L~~L~l~~n~l~~~~~~~l~---~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~ 302 (406)
.+ ..++ +|++|++.+|.+.+.....+. .+++|++|+|+.|.+.+. ++..+..+++|+.|+|++|.|+...
T Consensus 245 ~l~~~~~p-~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 245 LFSKDRFP-NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp GSCTTTCT-TCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred HHhcCCCC-CcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 01 1233 788888888887654333332 477899999999988764 3334456789999999999887554
Q ss_pred chhhcC-CCCCCEEEeeCCc
Q 015481 303 PNSICC-LPKLENFTYSYNF 321 (406)
Q Consensus 303 p~~l~~-l~~L~~L~Ls~N~ 321 (406)
...+.. + ...++++.|+
T Consensus 324 ~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 324 KKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHc--CCEEEecCCc
Confidence 444443 2 3668888887
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.88 E-value=3.4e-09 Score=101.08 Aligned_cols=65 Identities=11% Similarity=0.196 Sum_probs=39.4
Q ss_pred cCCCCcEEEeecCCCCCccchhhc---CCCCCCEEeCcCCccccc----CchhhcCCCCCCEEEeeCCcCCc
Q 015481 260 LLNQVTVFDVSFNNLVGSLPESMG---NMKSLEQLNVAHNNLSGA----IPNSICCLPKLENFTYSYNFFCT 324 (406)
Q Consensus 260 ~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~ 324 (406)
.+++|++|+|.+|.+.+..+..+. .+++|++|+|+.|.|.+. ++..+..+++|+.|+|++|.|+.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 356777777777777644333332 456777777777777643 23333445677777777776654
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.62 E-value=7e-07 Score=86.10 Aligned_cols=216 Identities=11% Similarity=0.038 Sum_probs=123.9
Q ss_pred cccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEeecCcCCCCCchhhhccc
Q 015481 112 PEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLK 191 (406)
Q Consensus 112 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 191 (406)
..+|.++.+|+.+.+.++..+ .-...|.++.+|+.+++..+ ++......|.++..|+.+.+..+... .....+....
T Consensus 155 ~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~ 231 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTG 231 (394)
T ss_dssp TTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCC
T ss_pred hhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCC
Confidence 356888888999988765433 44557888888888888776 44455567778888888877665433 1111222223
Q ss_pred cCeeeccccccccCCCCCCCC-CCccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEee
Q 015481 192 LDALFLNNNKFTSSLPNNIGN-SPVSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVS 270 (406)
Q Consensus 192 L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 270 (406)
|+.+.+.... +......+.. ..++.+.+..+... .....+.... .++.+....+.+. ...+..+.+|+.+.+.
T Consensus 232 l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~-~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 232 VKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCS-GLKKVIYGSVIVP---EKTFYGCSSLTEVKLL 305 (394)
T ss_dssp CCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCT-TCCEEEECSSEEC---TTTTTTCTTCCEEEEC
T ss_pred CceEEECCCc-eecccccccccccceeEEcCCCcce-eecccccccc-ccceeccCceeec---cccccccccccccccc
Confidence 6666664332 1111222222 23666666554321 1122233333 5666665554332 2345667777777776
Q ss_pred cCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC----cCCCCCeeeCCC
Q 015481 271 FNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL----ACLKLKVKDDRQ 339 (406)
Q Consensus 271 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~L~~L~l~~ 339 (406)
.+ ++..-...|.++.+|+.++|..+ ++..-..+|.++.+|+.+++..| ++.+.. .|.+|+.+++..
T Consensus 306 ~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 306 DS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred cc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 44 44334455677777777777644 55344556777777777777655 444433 456677776654
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.59 E-value=1.5e-06 Score=83.83 Aligned_cols=79 Identities=9% Similarity=0.052 Sum_probs=47.8
Q ss_pred cEEEEECCCCCccccCcccccCCCCCCEEEcCCCc---CCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEE
Q 015481 96 TVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNR---FCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFL 172 (406)
Q Consensus 96 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~---l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 172 (406)
.|+.+.+... ++..-..+|.++.+|+.+.+..|. ++..-..+|.++.+|+.+.+..+ ++......|..+.+|+.+
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 4677777643 554455678888888888877653 44333445666677776666544 333444455666666666
Q ss_pred Eeec
Q 015481 173 DIRF 176 (406)
Q Consensus 173 ~Ls~ 176 (406)
.+..
T Consensus 143 ~lp~ 146 (394)
T 4gt6_A 143 TIPE 146 (394)
T ss_dssp ECCT
T ss_pred cccc
Confidence 6643
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.56 E-value=8.4e-07 Score=85.55 Aligned_cols=198 Identities=10% Similarity=0.015 Sum_probs=106.1
Q ss_pred CchhhCCcCCceEecccccccccCchhhcCCCCCcEEEeecCcCCCCCchhhhccc-cCeeeccccccccCCCCCCCCCC
Q 015481 136 PDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQFEGEIPSAVFDLK-LDALFLNNNKFTSSLPNNIGNSP 214 (406)
Q Consensus 136 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-L~~L~L~~n~l~~~~~~~~~~~~ 214 (406)
...|.++++|+.+.+..+..+ .....|.++.+|+.+++..+ ++..-...+.... |+.+.+..+... .....+....
T Consensus 155 ~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~ 231 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTG 231 (394)
T ss_dssp TTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCC
T ss_pred hhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCC
Confidence 345777777777777655432 44456677777777777655 3312222333344 666665544332 1122233344
Q ss_pred ccEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCc
Q 015481 215 VSVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVA 294 (406)
Q Consensus 215 L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 294 (406)
++.+.+.... ...-...+.... .++.+.+..+... .....+..+..++.+....+.+. ...+..+.+|+.+.+.
T Consensus 232 l~~i~ip~~~-~~i~~~~f~~~~-~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 232 VKNIIIPDSF-TELGKSVFYGCT-DLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLL 305 (394)
T ss_dssp CCEEEECTTC-CEECSSTTTTCS-SCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEEC
T ss_pred CceEEECCCc-eecccccccccc-cceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccc
Confidence 6666654321 111112233333 6777777655332 23445666777777766554332 2345667777777776
Q ss_pred CCcccccCchhhcCCCCCCEEEeeCCcCCcCCC----cCCCCCeeeCCCCCCCCC
Q 015481 295 HNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL----ACLKLKVKDDRQNCIPNR 345 (406)
Q Consensus 295 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~L~~L~l~~N~l~~~ 345 (406)
++ ++..-..+|.++.+|+.+++..+ ++.+.. .|.+|+.+++..| ++.+
T Consensus 306 ~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I 357 (394)
T 4fs7_A 306 DS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKI 357 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEE
T ss_pred cc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEe
Confidence 54 44344456677777777777543 444333 4566777777655 4443
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.54 E-value=3.2e-08 Score=85.11 Aligned_cols=84 Identities=20% Similarity=0.266 Sum_probs=35.8
Q ss_pred ccceeeeccCCCccc----ChhhhccCCCCcEEEeecCCCCCc----cchhhcCCCCCCEEeC--cCCccccc----Cch
Q 015481 239 TLNEIILANAKLKGC----LLKDIGLLNQVTVFDVSFNNLVGS----LPESMGNMKSLEQLNV--AHNNLSGA----IPN 304 (406)
Q Consensus 239 ~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L--s~N~l~~~----~p~ 304 (406)
+|++|+|++|++... +...+...++|++|+|++|.|... +...+...++|++|+| ++|.|... +..
T Consensus 66 ~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~ 145 (185)
T 1io0_A 66 YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN 145 (185)
T ss_dssp SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH
T ss_pred CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH
Confidence 455555555554432 122233334455555555555422 2333344444555555 44444422 222
Q ss_pred hhcCCCCCCEEEeeCCcC
Q 015481 305 SICCLPKLENFTYSYNFF 322 (406)
Q Consensus 305 ~l~~l~~L~~L~Ls~N~l 322 (406)
.+...++|++|+|++|.+
T Consensus 146 ~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 146 MLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHCSSCCEEECCCSSH
T ss_pred HHHhCCCcCEEeccCCCC
Confidence 233334444555444443
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.52 E-value=1.4e-06 Score=83.92 Aligned_cols=239 Identities=9% Similarity=0.110 Sum_probs=132.6
Q ss_pred CCCCCcEEEEECCCCC---ccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCC
Q 015481 91 DPDCLTVAGIDLNQAN---IAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLP 167 (406)
Q Consensus 91 ~~~~~~l~~L~L~~n~---l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 167 (406)
+..+.+|+.+.+..+. ++..-..+|..+..|+.+.+..+ ++..-...|..+.+|+.+.+..+- +......|..+.
T Consensus 83 F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~ 160 (394)
T 4gt6_A 83 FYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGV-TSVADGMFSYCY 160 (394)
T ss_dssp TTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCT
T ss_pred hhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccccccee-eeecccceeccc
Confidence 3467788888887653 44344466778888888777654 443444567788888888886543 334455677778
Q ss_pred CCcEEEeecCcCCCCCchh-hhccccCeeeccccccccCCCCCCCCC-Cc------------------------------
Q 015481 168 SLKFLDIRFNQFEGEIPSA-VFDLKLDALFLNNNKFTSSLPNNIGNS-PV------------------------------ 215 (406)
Q Consensus 168 ~L~~L~Ls~N~l~~~~p~~-~~~l~L~~L~L~~n~l~~~~~~~~~~~-~L------------------------------ 215 (406)
+|+.+.+..+ ++ .+... +....|+.+.+..+-.. .....+... .+
T Consensus 161 ~L~~i~~~~~-~~-~I~~~aF~~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (394)
T 4gt6_A 161 SLHTVTLPDS-VT-AIEERAFTGTALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIR 237 (394)
T ss_dssp TCCEEECCTT-CC-EECTTTTTTCCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEE
T ss_pred ccccccccce-ee-EeccccccccceeEEEECCcccc-cccchhhhccccceecccccccccccceeecccccccccccc
Confidence 8888877654 22 22222 22222555554332111 000001000 01
Q ss_pred -------cEEEcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCC
Q 015481 216 -------SVLVLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSL 288 (406)
Q Consensus 216 -------~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 288 (406)
..+.+.. .+...-...+.... .|+.+.+.++.. ......|.++..|+.+.+. +.++..-...|.++.+|
T Consensus 238 ~~~~~~~~~~~ip~-~v~~i~~~aF~~c~-~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L 313 (394)
T 4gt6_A 238 YPSQREDPAFKIPN-GVARIETHAFDSCA-YLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISL 313 (394)
T ss_dssp CCTTCCCSEEECCT-TEEEECTTTTTTCS-SCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTC
T ss_pred cccccccceEEcCC-cceEcccceeeecc-cccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCc
Confidence 1111100 00000011223333 677777765433 2234566777788888775 44553444567777888
Q ss_pred CEEeCcCCcccccCchhhcCCCCCCEEEeeCCcCCcCCC----cCCCCCeeeCCCC
Q 015481 289 EQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFFCTEPL----ACLKLKVKDDRQN 340 (406)
Q Consensus 289 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~L~~L~l~~N 340 (406)
+.++|..+ ++..-..+|.++.+|+.+.+..+ ++.+.. .|.+|+.+++.+|
T Consensus 314 ~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 314 KSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 88888754 54344566777888888888544 444433 5667888777765
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.52 E-value=5.9e-08 Score=83.46 Aligned_cols=104 Identities=16% Similarity=0.087 Sum_probs=59.1
Q ss_pred ccceeeeccC-CCccc----ChhhhccCCCCcEEEeecCCCCCc----cchhhcCCCCCCEEeCcCCccccc----Cchh
Q 015481 239 TLNEIILANA-KLKGC----LLKDIGLLNQVTVFDVSFNNLVGS----LPESMGNMKSLEQLNVAHNNLSGA----IPNS 305 (406)
Q Consensus 239 ~L~~L~l~~n-~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~ 305 (406)
+|++|+|++| .+... +...+...++|++|+|++|.|... +...+...++|++|+|++|.|... +...
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~ 116 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA 116 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence 5666666666 55432 223344556677777777766532 233344456677777777766543 3444
Q ss_pred hcCCCCCCEEEe--eCCcCCcCCC--------cCCCCCeeeCCCCCC
Q 015481 306 ICCLPKLENFTY--SYNFFCTEPL--------ACLKLKVKDDRQNCI 342 (406)
Q Consensus 306 l~~l~~L~~L~L--s~N~l~~~~~--------~~~~L~~L~l~~N~l 342 (406)
+...++|++|+| ++|.|..... ....|+.|++++|.+
T Consensus 117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 555566777777 6666654321 235566777766654
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.44 E-value=7.2e-08 Score=87.50 Aligned_cols=65 Identities=20% Similarity=0.288 Sum_probs=36.4
Q ss_pred ccCCCCcEEEeecCCCCC--ccchhhcCCCCCCEEeCcCCcccccCchhhcCCC--CCCEEEeeCCcCCcC
Q 015481 259 GLLNQVTVFDVSFNNLVG--SLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLP--KLENFTYSYNFFCTE 325 (406)
Q Consensus 259 ~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~ 325 (406)
.++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+++.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~ 235 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDT 235 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccc
Confidence 345566666666666664 3344455666666666666666533 2222222 666666666666653
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.40 E-value=1.2e-07 Score=86.09 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=61.0
Q ss_pred hcccccceeeeccCCCcc--cChhhhccCCCCcEEEeecCCCCCccchhhcCCC--CCCEEeCcCCcccccCch------
Q 015481 235 KMAGTLNEIILANAKLKG--CLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMK--SLEQLNVAHNNLSGAIPN------ 304 (406)
Q Consensus 235 ~l~~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p~------ 304 (406)
.++ +|+.|+|++|++++ .++..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+.+.+|.
T Consensus 168 ~l~-~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 168 NIP-ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HCT-TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hCC-CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 345 89999999999988 3456777899999999999999854 2344444 899999999999876652
Q ss_pred -hhcCCCCCCEEE
Q 015481 305 -SICCLPKLENFT 316 (406)
Q Consensus 305 -~l~~l~~L~~L~ 316 (406)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 356788888775
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.22 E-value=0.00011 Score=70.14 Aligned_cols=97 Identities=11% Similarity=0.059 Sum_probs=55.0
Q ss_pred ccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEee
Q 015481 239 TLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYS 318 (406)
Q Consensus 239 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 318 (406)
.|+.+.+..+ ++..-...+.++.+|+.+.+..+ ++......|.++.+|+.+.+.++.++..-...|.++.+|+.++|.
T Consensus 241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred cceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 5666666543 33333445566666666666543 442333456666777777777666664445566667777777765
Q ss_pred CCcCCcCCC----cCCCCCeeeCC
Q 015481 319 YNFFCTEPL----ACLKLKVKDDR 338 (406)
Q Consensus 319 ~N~l~~~~~----~~~~L~~L~l~ 338 (406)
.+ ++.+.. .|.+|+.+.+.
T Consensus 319 ~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 319 TA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TT-CCEECTTTTTTCTTCCCCCCC
T ss_pred cc-ccEEHHHHhhCCCCCCEEEEC
Confidence 43 433332 34556666554
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.03 E-value=0.00035 Score=66.56 Aligned_cols=237 Identities=9% Similarity=0.016 Sum_probs=130.1
Q ss_pred cEEEEECCCCCccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEecccccccccCchhhcCCCCCcEEEee
Q 015481 96 TVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIR 175 (406)
Q Consensus 96 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 175 (406)
+++.+.+.. .++..-..+|.++.+|+.++|..+ ++..-..+|.++ +|+.+.+..+ ++......|.. .+|+.+.+.
T Consensus 47 ~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~lp 121 (379)
T 4h09_A 47 RISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEFP 121 (379)
T ss_dssp GCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEECC
T ss_pred CCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccCC
Confidence 566666653 355444556777788888887654 553334466665 5666666543 33233334443 367777775
Q ss_pred cCcCCCCCchhhhccccCeeeccccccccCCCCCCCC-CCcc------------------------------------EE
Q 015481 176 FNQFEGEIPSAVFDLKLDALFLNNNKFTSSLPNNIGN-SPVS------------------------------------VL 218 (406)
Q Consensus 176 ~N~l~~~~p~~~~~l~L~~L~L~~n~l~~~~~~~~~~-~~L~------------------------------------~L 218 (406)
.+-.. .-...+....++.+.+..+ ++......+.. ..++ .+
T Consensus 122 ~~~~~-i~~~~F~~~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (379)
T 4h09_A 122 GATTE-IGNYIFYNSSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEF 199 (379)
T ss_dssp TTCCE-ECTTTTTTCCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEE
T ss_pred Ccccc-ccccccccceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccccccc
Confidence 44221 1111222222333332221 11000111110 1111 22
Q ss_pred EcccccCCcCCchhHHhcccccceeeeccCCCcccChhhhccCCCCcEEEeecCCCCCccchhhcCCCCCCEEeCcCCcc
Q 015481 219 VLANNNFDSCLPPSLTKMAGTLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNNLVGSLPESMGNMKSLEQLNVAHNNL 298 (406)
Q Consensus 219 ~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 298 (406)
.+.... .......+.... +|+.+.+..+ +.......+.++..|+.+.+..+ ++..-...+.++.+|+.+.+..+ +
T Consensus 200 ~~~~~~-~~i~~~~f~~~~-~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i 274 (379)
T 4h09_A 200 TIPSTV-KTVTAYGFSYGK-NLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-V 274 (379)
T ss_dssp ECCTTC-CEECTTTTTTCS-SCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-C
T ss_pred ccccce-eEEeeccccccc-ccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-c
Confidence 111110 000111222223 6666666543 33334556778889999998866 55355567888899999999765 5
Q ss_pred cccCchhhcCCCCCCEEEeeCCcCCcCCC----cCCCCCeeeCCCCCCCCC
Q 015481 299 SGAIPNSICCLPKLENFTYSYNFFCTEPL----ACLKLKVKDDRQNCIPNR 345 (406)
Q Consensus 299 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~L~~L~l~~N~l~~~ 345 (406)
...-...|.++.+|+.+.+.++.++.+.. .|.+|+.+++..+ ++.+
T Consensus 275 ~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I 324 (379)
T 4h09_A 275 KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTI 324 (379)
T ss_dssp SEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEE
T ss_pred eeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEE
Confidence 53455678899999999999988877665 5678999998654 4444
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.03 E-value=2.5e-06 Score=72.08 Aligned_cols=84 Identities=11% Similarity=0.095 Sum_probs=66.6
Q ss_pred CcEEEEECCCCCccccCcccccCCCCCCEEEcCCCc-CCccCCchhhCC----cCCceEeccccc-ccccCchhhcCCCC
Q 015481 95 LTVAGIDLNQANIAGTLPEKLGLLQDLALFHINSNR-FCGTIPDSFRNM----QLLFELDVSNNQ-FSGCFPSVVLCLPS 168 (406)
Q Consensus 95 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~ 168 (406)
.+|++||++++.++..--..+..+++|++|+|++|. |++.--..++.+ ++|++|+|++|. ||+.--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 379999999999876544567889999999999985 775544556664 479999999985 88655566788999
Q ss_pred CcEEEeecCc
Q 015481 169 LKFLDIRFNQ 178 (406)
Q Consensus 169 L~~L~Ls~N~ 178 (406)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999886
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.01 E-value=3e-06 Score=71.56 Aligned_cols=82 Identities=10% Similarity=0.079 Sum_probs=40.4
Q ss_pred ccceeeeccCCCcccChhhhccCCCCcEEEeecCC-CCCccchhhcCC----CCCCEEeCcCCc-ccccCchhhcCCCCC
Q 015481 239 TLNEIILANAKLKGCLLKDIGLLNQVTVFDVSFNN-LVGSLPESMGNM----KSLEQLNVAHNN-LSGAIPNSICCLPKL 312 (406)
Q Consensus 239 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~L 312 (406)
.|++|+++++.++..-...+..+++|+.|+|++|. +++.--..+..+ ++|++|+|++|. |+..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555544334444555555555555553 443333334332 245555555552 544333344455555
Q ss_pred CEEEeeCC
Q 015481 313 ENFTYSYN 320 (406)
Q Consensus 313 ~~L~Ls~N 320 (406)
+.|+|++.
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555554
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.51 E-value=0.00012 Score=62.93 Aligned_cols=61 Identities=20% Similarity=0.194 Sum_probs=26.1
Q ss_pred ccCCCCcEEEeecCCCCC----ccchhhcCCCCCCEEeCcCCccccc----CchhhcCCCCCCEEEeeC
Q 015481 259 GLLNQVTVFDVSFNNLVG----SLPESMGNMKSLEQLNVAHNNLSGA----IPNSICCLPKLENFTYSY 319 (406)
Q Consensus 259 ~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~ 319 (406)
..-+.|+.|+|++|+|.. .+.+.+..-+.|++|+|++|.|... +-..+..-+.|++|+|++
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 334445555555555442 1222233344555555555555422 222233334455555543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.46 E-value=7.9e-05 Score=64.00 Aligned_cols=84 Identities=19% Similarity=0.171 Sum_probs=52.5
Q ss_pred ccceeeeccCCCccc----ChhhhccCCCCcEEEeecCCCCCc----cchhhcCCCCCCEEeCcCC---cccc----cCc
Q 015481 239 TLNEIILANAKLKGC----LLKDIGLLNQVTVFDVSFNNLVGS----LPESMGNMKSLEQLNVAHN---NLSG----AIP 303 (406)
Q Consensus 239 ~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N---~l~~----~~p 303 (406)
.|++|+|++|++... +...+..-+.|+.|+|+.|.|... +-+.+..-+.|++|+|++| .+.. .+.
T Consensus 71 ~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia 150 (197)
T 1pgv_A 71 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM 150 (197)
T ss_dssp CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH
T ss_pred CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHH
Confidence 677777777777643 233445567778888888877643 3334555667888888754 3332 134
Q ss_pred hhhcCCCCCCEEEeeCCcC
Q 015481 304 NSICCLPKLENFTYSYNFF 322 (406)
Q Consensus 304 ~~l~~l~~L~~L~Ls~N~l 322 (406)
..+..-+.|+.|+++.|.+
T Consensus 151 ~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 151 MAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHCSSCCEEECCCCCH
T ss_pred HHHHhCCCcCeEeccCCCc
Confidence 4555667777787776653
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.80 E-value=0.0019 Score=51.57 Aligned_cols=55 Identities=25% Similarity=0.346 Sum_probs=26.2
Q ss_pred EEEeecCCCC-CccchhhcCCCCCCEEeCcCCcccccCchhhcCCCCCCEEEeeCCcC
Q 015481 266 VFDVSFNNLV-GSLPESMGNMKSLEQLNVAHNNLSGAIPNSICCLPKLENFTYSYNFF 322 (406)
Q Consensus 266 ~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 322 (406)
.++.+++.++ ..+|..+. .+|++|+|++|+|+..-+..|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4444555443 23333221 2455555555555533333445555555555555544
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.79 E-value=0.0019 Score=51.53 Aligned_cols=35 Identities=23% Similarity=0.375 Sum_probs=17.7
Q ss_pred CceEecccccccccCchhhcCCCCCcEEEeecCcC
Q 015481 145 LFELDVSNNQFSGCFPSVVLCLPSLKFLDIRFNQF 179 (406)
Q Consensus 145 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 179 (406)
|++|+|++|+|+...+..|..+++|++|+|++|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 44555555555443334445555555555555554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=40.62 E-value=39 Score=24.71 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=16.9
Q ss_pred chhhCCcCCceEecccccccccCchhhcCCCCCcEEEee
Q 015481 137 DSFRNMQLLFELDVSNNQFSGCFPSVVLCLPSLKFLDIR 175 (406)
Q Consensus 137 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 175 (406)
..|.++++|+.+.+..+ ++.+-...|.++.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 34444445555444432 222333444455555555443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=40.00 E-value=86 Score=22.79 Aligned_cols=48 Identities=10% Similarity=0.036 Sum_probs=33.5
Q ss_pred CccccCcccccCCCCCCEEEcCCCcCCccCCchhhCCcCCceEeccccc
Q 015481 106 NIAGTLPEKLGLLQDLALFHINSNRFCGTIPDSFRNMQLLFELDVSNNQ 154 (406)
Q Consensus 106 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 154 (406)
.++..-..+|.+++.|+.+.|..+ ++..-...|.++.+|+.+.+....
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence 344444566888888888888765 443445678888888888887643
Done!