Query 015482
Match_columns 406
No_of_seqs 340 out of 1565
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 06:43:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015482.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015482hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0571 Rnc dsRNA-specific rib 100.0 2.8E-43 6.1E-48 336.6 16.4 186 134-352 6-203 (235)
2 PRK12371 ribonuclease III; Rev 100.0 6.5E-41 1.4E-45 321.0 17.1 187 133-354 9-205 (235)
3 PRK14718 ribonuclease III; Pro 100.0 1.8E-40 3.8E-45 337.5 15.7 179 136-352 3-193 (467)
4 PRK12372 ribonuclease III; Rev 100.0 7.2E-40 1.6E-44 331.2 15.9 178 136-351 3-192 (413)
5 PRK00102 rnc ribonuclease III; 100.0 1.6E-36 3.5E-41 287.2 16.1 184 135-351 4-199 (229)
6 TIGR02191 RNaseIII ribonucleas 100.0 1.6E-35 3.5E-40 278.2 14.6 181 139-351 1-193 (220)
7 PF14622 Ribonucleas_3_3: Ribo 100.0 2.3E-32 5.1E-37 238.7 9.7 126 163-293 2-127 (128)
8 smart00535 RIBOc Ribonuclease 100.0 1.9E-29 4.1E-34 218.0 11.9 126 165-295 2-127 (129)
9 cd00593 RIBOc RIBOc. Ribonucle 100.0 1.2E-28 2.6E-33 213.2 11.4 127 165-294 2-128 (133)
10 KOG1817 Ribonuclease [RNA proc 99.9 1.5E-27 3.2E-32 239.9 10.9 153 137-305 276-439 (533)
11 PF00636 Ribonuclease_3: Ribon 99.9 6.5E-24 1.4E-28 180.2 6.4 91 188-278 1-114 (114)
12 KOG1817 Ribonuclease [RNA proc 99.6 2.8E-16 6.1E-21 159.0 7.3 145 133-290 40-235 (533)
13 KOG0701 dsRNA-specific nucleas 99.5 1.3E-14 2.8E-19 166.6 9.4 135 137-283 982-1172(1606)
14 KOG3769 Ribonuclease III domai 99.4 1E-12 2.2E-17 128.3 11.3 176 130-320 58-260 (333)
15 KOG0701 dsRNA-specific nucleas 99.2 6.2E-12 1.4E-16 144.9 3.9 146 117-278 1351-1518(1606)
16 COG1939 Ribonuclease III famil 97.9 5.9E-05 1.3E-09 66.2 8.3 101 187-290 15-127 (132)
17 PF11469 Ribonucleas_3_2: Ribo 89.3 1.5 3.2E-05 37.7 6.7 87 189-294 2-92 (120)
18 PHA02701 ORF020 dsRNA-binding 88.7 0.41 8.8E-06 44.9 3.2 43 293-354 107-151 (183)
19 PHA03103 double-strand RNA-bin 80.0 2 4.3E-05 40.4 3.7 41 296-355 111-152 (183)
20 smart00358 DSRM Double-strande 57.9 15 0.00032 27.1 3.6 38 297-352 2-40 (67)
21 cd00048 DSRM Double-stranded R 55.9 14 0.00031 27.1 3.2 37 297-351 3-41 (68)
22 PF14709 DND1_DSRM: double str 48.3 24 0.00052 28.5 3.6 47 299-363 7-56 (80)
23 KOG3732 Staufen and related do 43.8 22 0.00047 36.5 3.2 43 299-359 148-191 (339)
24 PRK02287 hypothetical protein; 39.0 32 0.0007 32.1 3.3 27 263-289 107-133 (171)
25 COG2042 Uncharacterized conser 28.6 59 0.0013 30.4 3.2 28 262-289 114-141 (179)
26 PF04034 DUF367: Domain of unk 25.8 68 0.0015 28.6 3.0 29 261-289 64-92 (127)
27 PF08383 Maf_N: Maf N-terminal 25.3 29 0.00063 24.1 0.4 12 261-272 24-35 (35)
No 1
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=100.00 E-value=2.8e-43 Score=336.62 Aligned_cols=186 Identities=26% Similarity=0.349 Sum_probs=171.8
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCcccccccCCCCCchHHHHHHHHHHHHHHHHHHHhhCCCC
Q 015482 134 EYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRE 213 (406)
Q Consensus 134 e~l~~l~~~LGy~F~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~~~~~~nnERLEFLGDaVL~lvvs~~Lf~~yP~~ 213 (406)
..+..+++.+||.|+| ++||.+||||+||.+++. ...||||||||||+||+++|+++||++||+.
T Consensus 6 ~~~~~l~~~lg~~f~~-------------~~lL~~AltH~S~~~e~~--~~~~nERLEFLGDavL~l~vae~Lf~~yP~~ 70 (235)
T COG0571 6 KKLEALEKKLGYTFKD-------------KELLEQALTHRSYANEHK--AVENNERLEFLGDAVLGLVVAEYLFKKYPNL 70 (235)
T ss_pred HHHHHHHHHhCCCcCC-------------HHHHHHHhcCcchhcccc--CCcchHHHHhhHHHHHHHHHHHHHHHHCCCC
Confidence 3567899999999999 899999999999998632 5679999999999999999999999999999
Q ss_pred ChhhHHHHHHHHcCcchHHHHHHHcCCCcccCcCchhhhhcccCCCChHHhHHHHHHHHHHHhcCHHHHHHHHHHhhCCC
Q 015482 214 SPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMD 293 (406)
Q Consensus 214 ~eG~Ls~~Rs~lVsn~~La~lA~~lGL~~~I~~~~~~~~~~~~~~~KiLADvfEALIGAIYlD~G~~~a~~fl~~~~~~~ 293 (406)
+||.||++|+.+||+.+|+.+|+.+||++||+.++|+...+++.+++++||+|||+|||||+|+|++.|++|+.++|.+.
T Consensus 71 ~EG~Ls~~ra~lV~~~~La~ia~~l~l~~~l~lg~ge~~~gg~~~~silaD~~EAligAiylD~g~~~~~~~i~~l~~~~ 150 (235)
T COG0571 71 PEGELSKLRAALVSEESLAEIARELGLGDYLRLGKGEEKSGGRRRESILADAFEALIGAIYLDSGLEAARKFILKLFLPR 150 (235)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCccchhhccCChhhcCCCCchhHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999665
Q ss_pred CC----------CCc-hHHHHhhc-CCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCCc
Q 015482 294 PE----------DKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGM 352 (406)
Q Consensus 294 i~----------~Kt-Lqe~lq~~-~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g~ 352 (406)
++ .|+ ||||+|++ +..|.|+++.++|+ +|.+.|.+.|..+.
T Consensus 151 ~~~~~~~~~~~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~------------------~h~~~F~v~v~v~~ 203 (235)
T COG0571 151 LEEIDAGDQFKDPKTRLQELLQAQGLVLPEYRLVKEEGP------------------AHDKEFTVEVAVGG 203 (235)
T ss_pred HhhccccccccChhHHHHHHHHhcCCCCCeEEEeeccCC------------------CCCceEEEEEEECC
Confidence 44 278 99999999 99999999999884 89999988776554
No 2
>PRK12371 ribonuclease III; Reviewed
Probab=100.00 E-value=6.5e-41 Score=321.03 Aligned_cols=187 Identities=20% Similarity=0.172 Sum_probs=165.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCcccccccCCCCCchHHHHHHHHHHHHHHHHHHHhhCCC
Q 015482 133 DEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPR 212 (406)
Q Consensus 133 ~e~l~~l~~~LGy~F~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~~~~~~nnERLEFLGDaVL~lvvs~~Lf~~yP~ 212 (406)
.+.+..++++|||+|+| ++||.+||||+||.+. ...||||||||||+||+++|+++||.+||+
T Consensus 9 ~~~~~~le~~lgy~F~~-------------~~Ll~~AlTH~S~~~~----~~~~~eRLEFLGDavL~l~vs~~Lf~~~p~ 71 (235)
T PRK12371 9 AATASILEERTGHRFAN-------------KERLERALTHSSARAS----KQGNYERLEFLGDRVLGLCVAEMLFEAFPD 71 (235)
T ss_pred HHHHHHHHHHHCCCCCC-------------HHHHHHHHcCcCcccC----CccchHhHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34567899999999998 8999999999999763 235899999999999999999999999999
Q ss_pred CChhhHHHHHHHHcCcchHHHHHHHcCCCcccCcCchhhhhcccCCCChHHhHHHHHHHHHHHhcCHHHHHHHHHHhhCC
Q 015482 213 ESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGM 292 (406)
Q Consensus 213 ~~eG~Ls~~Rs~lVsn~~La~lA~~lGL~~~I~~~~~~~~~~~~~~~KiLADvfEALIGAIYlD~G~~~a~~fl~~~~~~ 292 (406)
.+||.|+.+|+.+|||.+|+.+|.++||++||+.+.+....+++..++++||+|||+|||||+|+|++.|++|+.++|.+
T Consensus 72 ~~eG~Lt~~rs~lV~n~~La~ia~~lgL~~~i~~~~~~~~~~~~~~~~ilad~~EAliGAiylD~G~~~a~~~i~~~~~~ 151 (235)
T PRK12371 72 ASEGELSVRLNQLVNAETCAAIADEIGLHDLIRTGSDVKKLTGKRLLNVRADVVEALIAAIYLDGGLEAARPFIQRYWQK 151 (235)
T ss_pred CCHHHHHHHHHHHhChHHHHHHHHHCCcHHHhccCcchhhcCCcccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998877655566668999999999999999999999999999999854
Q ss_pred CC--------CCCc-hHHHHhhc-CCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCCccc
Q 015482 293 DP--------EDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMHR 354 (406)
Q Consensus 293 ~i--------~~Kt-Lqe~lq~~-~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g~~~ 354 (406)
.+ +.|+ ||||+|+. ...|.|.+++++|+ +|.+.|.+.|..+...
T Consensus 152 ~~~~~~~~~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp------------------~h~~~F~v~v~v~~~~ 205 (235)
T PRK12371 152 RALETDAARRDAKTELQEWAHAQFGVTPVYRVDSRSGP------------------DHDPRFTVEVEVKGFA 205 (235)
T ss_pred HHhccccccCCHHHHHHHHHHhcCCCCCeEEEEEeecC------------------CCCCeEEEEEEECCEE
Confidence 32 3378 99999988 88899999988884 7889998888665443
No 3
>PRK14718 ribonuclease III; Provisional
Probab=100.00 E-value=1.8e-40 Score=337.45 Aligned_cols=179 Identities=21% Similarity=0.234 Sum_probs=162.1
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCcccccccCCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCCh
Q 015482 136 LLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESP 215 (406)
Q Consensus 136 l~~l~~~LGy~F~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~~~~~~nnERLEFLGDaVL~lvvs~~Lf~~yP~~~e 215 (406)
+..|+++|||+|+| +.||.+||||+||.+ .||||||||||+||+++|+++||++||+++|
T Consensus 3 l~~LEkrLGY~Fkn-------------~~LL~eALTH~Sys~-------e~NERLEFLGDAVL~liVse~Lf~~fPdl~E 62 (467)
T PRK14718 3 LSQLESRLRYEFRN-------------AELLRQALTHRSHSA-------THNERLEFLGDSVLNCAVAALLFQRFGKLDE 62 (467)
T ss_pred HHHHHHHhCCCcCC-------------HHHHHHHHhccCcCc-------ccHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 35689999999998 899999999999965 3899999999999999999999999999999
Q ss_pred hhHHHHHHHHcCcchHHHHHHHcCCCcccCcCchhhhhcccCCCChHHhHHHHHHHHHHHhcCHHHHHHHHHHhhCCCC-
Q 015482 216 APMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDP- 294 (406)
Q Consensus 216 G~Ls~~Rs~lVsn~~La~lA~~lGL~~~I~~~~~~~~~~~~~~~KiLADvfEALIGAIYlD~G~~~a~~fl~~~~~~~i- 294 (406)
|.||.+|+.+|||.+|+.+|+++||++||+.+.++...+++.++++++|+|||||||||+|+|++.|+.||.++|.+.+
T Consensus 63 GeLT~LRS~LVSnetLA~IAr~LGL~d~Lrlg~gE~~sgG~~~~sILADvFEALIGAIYLDsG~e~a~~fI~~ll~p~i~ 142 (467)
T PRK14718 63 GDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVIKRLYVPILD 142 (467)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHcCchHHHhhCCcccccCCCCChhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999988877777778999999999999999999999999999999875332
Q ss_pred ---------CCCc-hHHHHhhc-CCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCCc
Q 015482 295 ---------EDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGM 352 (406)
Q Consensus 295 ---------~~Kt-Lqe~lq~~-~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g~ 352 (406)
+.|+ ||||+|++ ...|.|++++++|+ +|.+.|.+.+..+.
T Consensus 143 ~~d~~~~~kDyKS~LQE~~Qk~~~~~PeY~li~esGP------------------dH~k~F~V~V~v~g 193 (467)
T PRK14718 143 HIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGA------------------AHNQQFEVECTVPK 193 (467)
T ss_pred hhcccccccCHHHHHHHHHHhcCCCCCeeEEeeeecC------------------CCCCeEEEEEEECC
Confidence 3377 99999999 88899999999994 78889988875543
No 4
>PRK12372 ribonuclease III; Reviewed
Probab=100.00 E-value=7.2e-40 Score=331.18 Aligned_cols=178 Identities=21% Similarity=0.239 Sum_probs=160.9
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCcccccccCCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCCh
Q 015482 136 LLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESP 215 (406)
Q Consensus 136 l~~l~~~LGy~F~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~~~~~~nnERLEFLGDaVL~lvvs~~Lf~~yP~~~e 215 (406)
+..|+++|||+|+| +.||.+||||+||.+ .+|||||||||+||+++|+++||++||+++|
T Consensus 3 l~~LEk~LGY~Fkn-------------~~LL~eALTH~Sy~~-------~~NERLEFLGDAVL~liVse~Lf~~fP~~~E 62 (413)
T PRK12372 3 LSQLESRLRYEFRN-------------AELLRQALTHRSHSA-------THNERLEFLGDSVLNCAVAALLFQRFGKLDE 62 (413)
T ss_pred HHHHHHHhCCCcCC-------------HHHHHHHHhcccccc-------ccHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 35689999999998 899999999999865 3899999999999999999999999999999
Q ss_pred hhHHHHHHHHcCcchHHHHHHHcCCCcccCcCchhhhhcccCCCChHHhHHHHHHHHHHHhcCHHHHHHHHHHhhCCC--
Q 015482 216 APMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMD-- 293 (406)
Q Consensus 216 G~Ls~~Rs~lVsn~~La~lA~~lGL~~~I~~~~~~~~~~~~~~~KiLADvfEALIGAIYlD~G~~~a~~fl~~~~~~~-- 293 (406)
|.||.+|+.+|||.+|+.+|+++||++||+.+.++...+++.+++++||+|||||||||+|+|++.|+.||.++|.+.
T Consensus 63 G~LT~lRS~LVsn~tLA~IA~~LgL~~~Lrlg~ge~~sgg~~~~kILADvfEALIGAIYLDsG~e~a~~fV~~ll~p~l~ 142 (413)
T PRK12372 63 GDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVIKRLYVPILD 142 (413)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHcCchHhhhcCcchhhcCCCCCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998887777777899999999999999999999999999999887532
Q ss_pred --------CCCCc-hHHHHhhc-CCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCC
Q 015482 294 --------PEDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPG 351 (406)
Q Consensus 294 --------i~~Kt-Lqe~lq~~-~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g 351 (406)
.+.|+ ||||+|++ ...|.|+++++.|+ +|.+.|.+.+..+
T Consensus 143 ~~~~~~~~~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp------------------~h~~~F~V~V~v~ 192 (413)
T PRK12372 143 HIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGA------------------AHNQQFEVECTVP 192 (413)
T ss_pred hcccccccCCHHHHHHHHHHhcCCCCCeeEEeeeecC------------------CCCceEEEEEEEC
Confidence 23378 99999998 88899999998884 7888888877544
No 5
>PRK00102 rnc ribonuclease III; Reviewed
Probab=100.00 E-value=1.6e-36 Score=287.23 Aligned_cols=184 Identities=26% Similarity=0.346 Sum_probs=159.3
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCcccccccCCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 015482 135 YLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRES 214 (406)
Q Consensus 135 ~l~~l~~~LGy~F~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~~~~~~nnERLEFLGDaVL~lvvs~~Lf~~yP~~~ 214 (406)
.+..++++|||+|+| ++|+.+||||+||.+. .+...+|||||||||+||+++++++||.+||+.+
T Consensus 4 ~~~~l~~~lg~~f~~-------------~~ll~~Alth~S~~~~--~~~~~~nerLefLGDavl~~~v~~~l~~~~p~~~ 68 (229)
T PRK00102 4 DLEELQKKLGYTFKD-------------PELLIQALTHRSYANE--NKGLKHNERLEFLGDAVLELVVSEYLFKRFPDLD 68 (229)
T ss_pred hHHHHHHHhCCCCCC-------------HHHHHHHhCccchhcc--CCCcccchhHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 457799999999998 8999999999999653 1346799999999999999999999999999999
Q ss_pred hhhHHHHHHHHcCcchHHHHHHHcCCCcccCcCchhhhhcccCCCChHHhHHHHHHHHHHHhcCHHHHHHHHHHhhCCCC
Q 015482 215 PAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDP 294 (406)
Q Consensus 215 eG~Ls~~Rs~lVsn~~La~lA~~lGL~~~I~~~~~~~~~~~~~~~KiLADvfEALIGAIYlD~G~~~a~~fl~~~~~~~i 294 (406)
+|.|+.+|+.+|||.+|+.+|.++||++||+++++....++..+++++||+|||+|||||+|+|++.|++|+.+++.+.+
T Consensus 69 ~g~l~~~~~~lvsn~~la~~a~~lgl~~~i~~~~~~~~~~~~~~~k~~ad~~EA~iGAiyld~g~~~~~~~i~~~~~~~l 148 (229)
T PRK00102 69 EGDLSKLRAALVREESLAEIARELGLGEYLLLGKGEEKSGGRRRPSILADAFEALIGAIYLDQGLEAARKFILRLFEPRI 148 (229)
T ss_pred hhHHHHHHHHHhCHHHHHHHHHHCCcHHHHccCcHHHHcCCCCCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887655444556899999999999999999999999999998875432
Q ss_pred C----------CCc-hHHHHhhc-CCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCC
Q 015482 295 E----------DKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPG 351 (406)
Q Consensus 295 ~----------~Kt-Lqe~lq~~-~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g 351 (406)
+ .|+ |++++|+. ...|.|+++..+|+ .|.+.|.+.+..+
T Consensus 149 ~~~~~~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~------------------~~~~~f~~~v~i~ 199 (229)
T PRK00102 149 EEIDLGDLVKDYKTRLQELLQGRGLPLPEYELVKEEGP------------------AHDKEFTVEVTVN 199 (229)
T ss_pred HhhccccccCCHHHHHHHHHHHcCCCCCceEEeeccCC------------------CCCceEEEEEEEC
Confidence 2 266 99999988 67899999888884 4666677666554
No 6
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=100.00 E-value=1.6e-35 Score=278.24 Aligned_cols=181 Identities=22% Similarity=0.311 Sum_probs=156.1
Q ss_pred HHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCcccccccCCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCChhhH
Q 015482 139 AKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPM 218 (406)
Q Consensus 139 l~~~LGy~F~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~~~~~~nnERLEFLGDaVL~lvvs~~Lf~~yP~~~eG~L 218 (406)
|+++|||+|+| ++|+.+||||+||.+.. .....+|||||||||+||++++++++|.+||+.++|.|
T Consensus 1 ~e~~lgy~F~~-------------~~ll~~Alth~S~~~~~-~~~~~~nerLe~lGd~vl~~~~~~~l~~~~p~~~~~~l 66 (220)
T TIGR02191 1 LEKRLGYKFKN-------------KELLEQALTHSSYANEH-HKGVKNNERLEFLGDAVLGLVVAEYLFKNFPDLSEGEL 66 (220)
T ss_pred ChHHhCCCcCC-------------HHHHHHHhcCccccccc-ccCccchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHH
Confidence 47899999999 89999999999997642 12356999999999999999999999999999999999
Q ss_pred HHHHHHHcCcchHHHHHHHcCCCcccCcCchhhhhcccCCCChHHhHHHHHHHHHHHhcCHHHHHHHHHHhhCCCCCC--
Q 015482 219 RERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPED-- 296 (406)
Q Consensus 219 s~~Rs~lVsn~~La~lA~~lGL~~~I~~~~~~~~~~~~~~~KiLADvfEALIGAIYlD~G~~~a~~fl~~~~~~~i~~-- 296 (406)
+.+|+.+|||++|+.+|.++||+++|+++++.....++..++++||+|||+|||||+|+|++.|++|+.+++.+.++.
T Consensus 67 ~~~~~~lvsn~~la~~a~~~gl~~~i~~~~~~~~~~~~~~~k~~ad~~eAliGAiyld~g~~~~~~~i~~~~~~~~~~~~ 146 (220)
T TIGR02191 67 SKLRAALVSEESLAEVARELGLGKFLLLGKGEEKSGGRRRESILADAFEALIGAIYLDSGLEAARKFILKLLIPRIDAIE 146 (220)
T ss_pred HHHHHHHhCHHHHHHHHHHCCcHHHhccCchHhhcCCcccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999987665544556689999999999999999999999999999887654322
Q ss_pred --------Cc-hHHHHhhc-CCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCC
Q 015482 297 --------KE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPG 351 (406)
Q Consensus 297 --------Kt-Lqe~lq~~-~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g 351 (406)
|+ |+|++|.. ...|.|+.+...|+ +|.+.|.+.+..+
T Consensus 147 ~~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~------------------~~~~~f~~~v~~~ 193 (220)
T TIGR02191 147 KEETLKDYKTALQEWAQARGKPLPEYRLIKEEGP------------------DHDKEFTVEVSVN 193 (220)
T ss_pred cccccCChHHHHHHHHHHcCCCCceEEEecccCC------------------CCCceEEEEEEEC
Confidence 66 99999987 66899998877773 5666777666444
No 7
>PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B.
Probab=99.97 E-value=2.3e-32 Score=238.71 Aligned_cols=126 Identities=27% Similarity=0.341 Sum_probs=107.0
Q ss_pred HHHHHHHhcCCCcccccccCCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHcCcchHHHHHHHcCCCc
Q 015482 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQN 242 (406)
Q Consensus 163 ~~LL~~ALTH~S~~~~~~~~~~~nnERLEFLGDaVL~lvvs~~Lf~~yP~~~eG~Ls~~Rs~lVsn~~La~lA~~lGL~~ 242 (406)
++|+.+||||+||.++ ...+|||||||||+||++++++++|+++|. ++|.+++.|+.+|++++|+.+|.++||++
T Consensus 2 ~~Ll~~alTH~S~~~~----~~~~nerLefLGd~vL~~~vs~~l~~~~~~-~~g~l~~~~~~lv~~~~La~~a~~lgL~~ 76 (128)
T PF14622_consen 2 DELLLQALTHKSYAHE----RKPNNERLEFLGDAVLGLVVSEYLFQRPPA-DEGELTRLRSNLVSNETLAEIAKQLGLDK 76 (128)
T ss_dssp HHHHHHHTB-HHHHHH----TCB-SHHHHHHHHHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHSHHHHHHHHHHTTCGG
T ss_pred HHHHHHHhcCcccccc----ccCccHHHHHHHHHHHHHHHHHHHHhCcCc-cchHHHHHHHHHhChHHHHHHHHHCCHHH
Confidence 6899999999999764 247999999999999999999999999554 89999999999999999999999999999
Q ss_pred ccCcCchhhhhcccCCCChHHhHHHHHHHHHHHhcCHHHHHHHHHHhhCCC
Q 015482 243 LIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMD 293 (406)
Q Consensus 243 ~I~~~~~~~~~~~~~~~KiLADvfEALIGAIYlD~G~~~a~~fl~~~~~~~ 293 (406)
+|+++.+......+..++++||+|||+|||||+|+|+++|++||.+++.+.
T Consensus 77 ~i~~~~~~~~~~~~~~~~vlad~feAliGAiyld~G~~~a~~~i~~~i~~~ 127 (128)
T PF14622_consen 77 LIRWGPGEEKSGGSGSDKVLADVFEALIGAIYLDSGFEAARKFIQKLILPR 127 (128)
T ss_dssp C-B--HHHHHTTGGG-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---
T ss_pred HHHhCccHhhcCCCCCccHHHhHHHHHHHHHHHHcCHHHHHHHHHHHhccc
Confidence 999988766666666789999999999999999999999999999988654
No 8
>smart00535 RIBOc Ribonuclease III family.
Probab=99.96 E-value=1.9e-29 Score=218.00 Aligned_cols=126 Identities=27% Similarity=0.363 Sum_probs=114.8
Q ss_pred HHHHHhcCCCcccccccCCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHcCcchHHHHHHHcCCCccc
Q 015482 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLI 244 (406)
Q Consensus 165 LL~~ALTH~S~~~~~~~~~~~nnERLEFLGDaVL~lvvs~~Lf~~yP~~~eG~Ls~~Rs~lVsn~~La~lA~~lGL~~~I 244 (406)
+|.+||||+||.+. ..+|||||||||+||+++++++++++||+.++|.|+.+++.+|||++|+.+|.++||++++
T Consensus 2 ll~~alth~s~~~~-----~~~~e~Le~lGd~vl~~~v~~~l~~~~p~~~~~~l~~~~~~lvsn~~la~~a~~~~l~~~i 76 (129)
T smart00535 2 LLLRALTHASYSNE-----HEHNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSNETLARLAKKLGLGEFI 76 (129)
T ss_pred HHHHHhhccccccc-----CcchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHCHHHHHHHHHHCCcHHHH
Confidence 78999999999752 2699999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCchhhhhcccCCCChHHhHHHHHHHHHHHhcCHHHHHHHHHHhhCCCCC
Q 015482 245 FPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPE 295 (406)
Q Consensus 245 ~~~~~~~~~~~~~~~KiLADvfEALIGAIYlD~G~~~a~~fl~~~~~~~i~ 295 (406)
+.+.......++..+|++||+|||+|||||+|+|++.|.+|+.+++.+.++
T Consensus 77 ~~~~~~~~~~~~~~~k~~a~~~eAliGAi~ld~g~~~~~~~i~~~~~~~~~ 127 (129)
T smart00535 77 RLGRGEAISGGRDKPSILADVFEALIGAIYLDSGLEAAREFIRDLLGPRLE 127 (129)
T ss_pred ccCchHhhcCCcccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 998765444444578999999999999999999999999999999876654
No 9
>cd00593 RIBOc RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing.
Probab=99.96 E-value=1.2e-28 Score=213.22 Aligned_cols=127 Identities=28% Similarity=0.384 Sum_probs=114.5
Q ss_pred HHHHHhcCCCcccccccCCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHcCcchHHHHHHHcCCCccc
Q 015482 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLI 244 (406)
Q Consensus 165 LL~~ALTH~S~~~~~~~~~~~nnERLEFLGDaVL~lvvs~~Lf~~yP~~~eG~Ls~~Rs~lVsn~~La~lA~~lGL~~~I 244 (406)
|+.+||||+||.... ...+|||||||||+||+++++++++.+||+.++|.++.+++.+|||++|+.+|.++||++++
T Consensus 2 ll~~alth~s~~~~~---~~~~~e~Le~lGdavl~~~~~~~l~~~~~~~~~~~l~~~~~~~v~n~~l~~~a~~~gl~~~i 78 (133)
T cd00593 2 LLLEALTHPSYANEH---GRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVSNETLARLARELGLGKYL 78 (133)
T ss_pred HHHHhhcCccccccC---CCcchHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHCHHHHHHHHHHcCcHHHh
Confidence 789999999997631 24799999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCchhhhhcccCCCChHHhHHHHHHHHHHHhcCHHHHHHHHHHhhCCCC
Q 015482 245 FPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDP 294 (406)
Q Consensus 245 ~~~~~~~~~~~~~~~KiLADvfEALIGAIYlD~G~~~a~~fl~~~~~~~i 294 (406)
+.++..........+|++||+|||+|||||+|+|.+.|.+|+.+++.+.+
T Consensus 79 ~~~~~~~~~~~~~~~k~~ad~~eAliGAiyld~g~~~~~~~i~~~~~~~~ 128 (133)
T cd00593 79 RLGKGEEKSGGRLRPKILADVFEALIGAIYLDGGFEAARKFLLRLLGPLI 128 (133)
T ss_pred ccCchHhhcCCcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99876554334457999999999999999999999999999999876654
No 10
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=99.94 E-value=1.5e-27 Score=239.92 Aligned_cols=153 Identities=18% Similarity=0.212 Sum_probs=133.1
Q ss_pred HHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCcccccccCCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCChh
Q 015482 137 LEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPA 216 (406)
Q Consensus 137 ~~l~~~LGy~F~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~~~~~~nnERLEFLGDaVL~lvvs~~Lf~~yP~~~eG 216 (406)
.++++++|..|.+ ..++.+|+|-+|-...+ -...+|||||||||+||+++++++||.+||+.+||
T Consensus 276 ~~~e~~~g~vF~H-------------irlla~aft~rs~~~n~--Lt~gHNqRLEFLGDSilqlv~T~ily~kFPdhhEG 340 (533)
T KOG1817|consen 276 TQFEEIIGIVFIH-------------IRLLARAFTLRSIPFNH--LTLGHNQRLEFLGDSILQLVMTEILYRKFPDHHEG 340 (533)
T ss_pred hhHHHHHHHHHHH-------------HHHHHHHhhccCCCchh--hhhhhhHHHHHhHHHHHHHHHHHHHHHhCCccccc
Confidence 4678999999998 89999999999876321 24569999999999999999999999999999999
Q ss_pred hHHHHHHHHcCcchHHHHHHHcCCCcccCcCchhhhhcccCCCChHHhHHHHHHHHHHHhcCHHHHHHHHHHhhCCCCCC
Q 015482 217 PMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPED 296 (406)
Q Consensus 217 ~Ls~~Rs~lVsn~~La~lA~~lGL~~~I~~~~~~~~~~~~~~~KiLADvfEALIGAIYlD~G~~~a~~fl~~~~~~~i~~ 296 (406)
.||.+|+.+|||++.++||..+|+++|+..+..... ....+.|.+||+|||+|||+|+|.|++.|++|+..++.|.++.
T Consensus 341 hLSlLRssLVsNetqakva~~lgf~e~li~n~~~k~-~~~lk~K~~ADlfEAfiGaLyvD~~le~~~qf~~~l~~Prl~~ 419 (533)
T KOG1817|consen 341 HLSLLRSSLVSNETQAKVADDLGFHEYLITNFDLKD-FQNLKLKDYADLFEAFIGALYVDKGLEYCRQFLRVLFFPRLKE 419 (533)
T ss_pred hHHHHHHHHhccHHHHHHHHHhCCchhhhhCcchhh-hhhhhHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHH
Confidence 999999999999999999999999999998764322 2234589999999999999999999999999999999887543
Q ss_pred ----------Cc-hHHHHhh
Q 015482 297 ----------KE-CQPKLRR 305 (406)
Q Consensus 297 ----------Kt-Lqe~lq~ 305 (406)
|+ ||.++-.
T Consensus 420 fi~nq~wndpkskLqq~cl~ 439 (533)
T KOG1817|consen 420 FIRNQDWNDPKSKLQQCCLT 439 (533)
T ss_pred HHHhhhccCcHHHHHHHHHH
Confidence 55 8887643
No 11
>PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3.1.26.3 from EC) (gene rnc) [] is an enzyme that digests double-stranded RNA. It is involved in the processing of ribosomal RNA precursors and of some mRNAs. RNase III is evolutionary related to a number of proteins including []: Saccharomyces cerevisiae (Baker's yeast) protein pac1, a ribonuclease that probably inhibits mating and meiosis by degrading a specific mRNA required for sexual development yeast ribonuclease III (gene RNT1), a dsRNA-specific nuclease that cleaves eukaryotic preribosomal RNA at various sites Caenorhabditis elegans hypothetical protein F26E4.13 Paramecium bursaria Chlorella virus 1 (PBCV-1) 1 protein A464R Synechocystis sp. (strain PCC 6803) hypothetical protein slr0346 yeast hypothetical protein SpAC8A4.08c, a protein with a N-terminal helicase domain and a C-terminal RNase III domain C. elegans hypothetical protein K12H4.8, a protein with the same structure as SpAC8A4.08c ; GO: 0003723 RNA binding, 0004525 ribonuclease III activity, 0006396 RNA processing; PDB: 2GSL_A 2NUE_B 1YYO_A 2NUF_A 1YZ9_A 1JFZ_A 1YYW_C 1RC5_B 1YYK_B 1RC7_A ....
Probab=99.89 E-value=6.5e-24 Score=180.16 Aligned_cols=91 Identities=26% Similarity=0.343 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHcCcchHHHHHHHcCCCcccCcCchhhhh--------------
Q 015482 188 SRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRL-------------- 253 (406)
Q Consensus 188 ERLEFLGDaVL~lvvs~~Lf~~yP~~~eG~Ls~~Rs~lVsn~~La~lA~~lGL~~~I~~~~~~~~~-------------- 253 (406)
||||||||+||+++++++||.+||+.++|.|+.+|+.+|||++|+.+|.++||++|++........
T Consensus 1 ErLefLGDavL~~~v~~~l~~~~p~~~~~~L~~~r~~~vsn~~L~~~a~~~gl~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (114)
T PF00636_consen 1 ERLEFLGDAVLKLLVSEYLFEKYPNLNEGQLTKLRSALVSNKFLARLAVKLGLHKYLRQEPFEIQRWIKPFNEDLNNGDS 80 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHSHHHHHHHHHHTTHGCTCBHHHHHHHHHHHCHHCC------
T ss_pred CcHhHhHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCHHHHHHHHHHhCchHhhhccchhHHHHHHHHHHHHHhccc
Confidence 799999999999999999999999999999999999999999999999999999999953221110
Q ss_pred ---------cccCCCChHHhHHHHHHHHHHHhcC
Q 015482 254 ---------IRKEREPPVKSVFWALFGAIYLCFG 278 (406)
Q Consensus 254 ---------~~~~~~KiLADvfEALIGAIYlD~G 278 (406)
.....+|++||+|||+|||+|+|+|
T Consensus 81 ~~~~~~~~~~~~~~~k~laD~~EAliGAiyld~G 114 (114)
T PF00636_consen 81 ESSISYDPKNQVLPPKVLADVFEALIGAIYLDSG 114 (114)
T ss_dssp -C-SSS--SSSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCCccccCCccHHHHHHHHHHHHHHHHhcC
Confidence 0111379999999999999999998
No 12
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=99.64 E-value=2.8e-16 Score=159.02 Aligned_cols=145 Identities=23% Similarity=0.327 Sum_probs=123.4
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCccccc---c---------------c-------------
Q 015482 133 DEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNK---A---------------R------------- 181 (406)
Q Consensus 133 ~e~l~~l~~~LGy~F~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~---~---------------~------------- 181 (406)
...+..+++.+||+|+| ..+|+.|+||||+.... . .
T Consensus 40 ~~~l~~~e~~i~y~f~~-------------r~~~~lal~h~s~~~~~Gt~~dh~kns~tncg~r~~~yg~~~~~~~~kr~ 106 (533)
T KOG1817|consen 40 HQSLDHLEELIGYTFQD-------------RCLLQLALTHPSHKLNYGTNPDHAKNSLTNCGIRQPKYGDRKEHIMTKRK 106 (533)
T ss_pred HHhHHHHHHHhCeeecc-------------hHHHHHHhcCchHHhhCCCCchhhhccccccCcCCcccchhHHHHHHHHH
Confidence 35688899999999999 79999999999985310 0 0
Q ss_pred --------------------CCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHcCcchHHHHHHHcCCC
Q 015482 182 --------------------HVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQ 241 (406)
Q Consensus 182 --------------------~~~~nnERLEFLGDaVL~lvvs~~Lf~~yP~~~eG~Ls~~Rs~lVsn~~La~lA~~lGL~ 241 (406)
....+|||||||||++.+++++.++|..+|...+|.|...|+++|.|+.++.+|+++.++
T Consensus 107 ~gin~li~imk~l~~~~~~~s~i~hnErle~lgdavve~~ss~hl~~~~~r~~eggLatyrta~vqnr~la~lakklrkd 186 (533)
T KOG1817|consen 107 LGINTLINIMKRLGVIQPTHSVIKHNERLEFLGDAVVELLSSNHLYFMFPRLEEGGLATYRTAIVQNRHLAKLAKKLRKD 186 (533)
T ss_pred hhhhHHHHHHhhccCCCCchhHhHHHHHHHHHhhccHHHHHHHHHHHccccccccchhHHHHHHHHhHHHHHHHHHHHHH
Confidence 013579999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcCchhhhhcccCCCChHHhHHHHHHHHHHHhcCHHHHHHHHHHhh
Q 015482 242 NLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVF 290 (406)
Q Consensus 242 ~~I~~~~~~~~~~~~~~~KiLADvfEALIGAIYlD~G~~~a~~fl~~~~ 290 (406)
.++....|.+.....+-...++++|||++||+|+|+|..++...+.+.+
T Consensus 187 ~fl~yahg~dl~~~~E~Kha~an~feavi~a~~l~g~~~~~e~lfs~~~ 235 (533)
T KOG1817|consen 187 EFLLYAHGYDLCFETELKHAMANCFEAVIGAKYLDGGLVVAEKLFSRAL 235 (533)
T ss_pred HHHHHhcCcchhhHHHHHHHHHHHHHHHhHHHHHhcchHHHHHHHHHHh
Confidence 9998765544433333467899999999999999999999888877664
No 13
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=99.54 E-value=1.3e-14 Score=166.64 Aligned_cols=135 Identities=20% Similarity=0.212 Sum_probs=110.2
Q ss_pred HHHHHHhC--CCCCCC-CCCCCCCCCCChHHHHHHHhcCCCcccccccCCCCCchHHHHHHHHHHHHHHHHHHHhhCCCC
Q 015482 137 LEAKQALG--YSLEPS-DQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRE 213 (406)
Q Consensus 137 ~~l~~~LG--y~F~~~-~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~~~~~~nnERLEFLGDaVL~lvvs~~Lf~~yP~~ 213 (406)
+.++.++. |.|.++ -++.-. ..+|++||||.++.. ..++||||+|||++|+++++.+||.+||+.
T Consensus 982 E~~e~i~n~~~~Fs~~~~~i~~~------~s~LLEAlT~~~~~~------s~s~Erle~Lgds~Lk~avsr~l~L~ypd~ 1049 (1606)
T KOG0701|consen 982 EAVEKILNFRYVFSISLASIALS------TSLLLEALTTSSCQD------SFSLERLELLGDSLLKLAVSRHLFLTYPDL 1049 (1606)
T ss_pred cccccccccceeccccccccccc------hhHHHHHhhcCcccc------chhHHHHHhhHHHHHHHHHHHHHHHhCCcc
Confidence 45677777 889871 000000 189999999999874 589999999999999999999999999999
Q ss_pred ChhhHHHHHHHHcCcchHHHHHHHcCCCcccCcCchhhh-----------------------------------------
Q 015482 214 SPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDR----------------------------------------- 252 (406)
Q Consensus 214 ~eG~Ls~~Rs~lVsn~~La~lA~~lGL~~~I~~~~~~~~----------------------------------------- 252 (406)
+||+++.+|+.+++|.+|+.+|...|+..|++.+..+..
T Consensus 1050 ~Egqls~lr~~~~~~~nl~~la~~~gl~~~~~~~~fep~~~~~p~~~~~~~~~~k~~~~~~~~~~~~e~~e~~~df~e~~ 1129 (1606)
T KOG0701|consen 1050 DEGQLSRLRDVNVSNDNLARLAVKKGLYSYLRHEGFEPSRWWVPGQLDVNNVDCKDLSGDQNYILYKELDEKIKDFQEAM 1129 (1606)
T ss_pred cchhHHHHHHhcccccchhhhhhcccchhhcccccccccccccccccccccccccccccccccccccchhhhhhHHHHhh
Confidence 999999999999999999999999999999986510000
Q ss_pred ------h---c---ccCCCChHHhHHHHHHHHHHHhcCHHHHH
Q 015482 253 ------L---I---RKEREPPVKSVFWALFGAIYLCFGFPEVY 283 (406)
Q Consensus 253 ------~---~---~~~~~KiLADvfEALIGAIYlD~G~~~a~ 283 (406)
. + ....+|++||++||++||+|+|+|+....
T Consensus 1130 ~~~~~~~~~~~~~~~~~~~ks~adl~eaLlga~~vD~~~~~~~ 1172 (1606)
T KOG0701|consen 1130 EKEDGDSRSKGGDHDWLAPKSPADLLEALLGAIYVDGGLLETF 1172 (1606)
T ss_pred hccCCcccccccccceecCCCHHHHHHHHHHhhhhhccchhhh
Confidence 0 0 12348999999999999999999988666
No 14
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=1e-12 Score=128.35 Aligned_cols=176 Identities=16% Similarity=0.187 Sum_probs=139.8
Q ss_pred hhhHHH-HHHHHHHhC-CCCCCCCCCCCCCCCCChHHHHHHHhcCCCccccccc-------------CCCCCchHHHHHH
Q 015482 130 TWIDEY-LLEAKQALG-YSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKAR-------------HVRAGHSRLCFLG 194 (406)
Q Consensus 130 ~~~~e~-l~~l~~~LG-y~F~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~~-------------~~~~nnERLEFLG 194 (406)
.|..+. +..+.++|| ..|. .+.+..|||.+||...... ....+|+-|--.|
T Consensus 58 ~W~~~sel~afg~RL~~~~is--------------~~~l~ka~t~~s~~~~~kv~~~~lg~~~~~~~~~~~~N~~L~~~G 123 (333)
T KOG3769|consen 58 NWDYNSELSAFGKRLQSEEIS--------------LSYLLKALTNLSFSYPEKVLRQQLGAETVAQVNPQYSNEELVEIG 123 (333)
T ss_pred CcchhHHHHHHHHHhcccccc--------------HHHHHHHHhCccccchHHHhhhhhcchhhhhhcCCcchHHHHHHH
Confidence 344443 678899999 5555 5899999999999653210 2456899999999
Q ss_pred HHHHHHHHHHHHHhhCCCCChhhHHHHHHHHcCcchHHHHHHHcCCCcccCcCchhhhhcccCCCChHHhHHHHHHHHHH
Q 015482 195 QFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIY 274 (406)
Q Consensus 195 DaVL~lvvs~~Lf~~yP~~~eG~Ls~~Rs~lVsn~~La~lA~~lGL~~~I~~~~~~~~~~~~~~~KiLADvfEALIGAIY 274 (406)
..++++.+++||-.+||++++..++.+-+.+++.+.|+.+|..+|+.++++....... +....++...+++=|++|+++
T Consensus 124 k~~~~~~v~~~l~~kyPrlP~E~l~ai~n~ll~ee~LahiAt~lGie~l~~seeFp~~-~eisq~ess~~aI~Al~~~~~ 202 (333)
T KOG3769|consen 124 KQFLSFYVTEYLKCKYPRLPEEGLHAIVNGLLGEEVLAHIATHLGIEELGLSEEFPKV-GEISQDESSRRAIGALLGSVG 202 (333)
T ss_pred HHHHHHHHHHHHHHhccCCcHHHHHHHHHHhhhHHHHHHHHHHhhHHHHhhcccCCCc-hhhhHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999887543211 111124678888889999998
Q ss_pred HhcCHHHHHHHHHHhh-CCCCCC--------Cc--hHHHHhhc-CCCCceEEEeeeCC
Q 015482 275 LCFGFPEVYRVLFEVF-GMDPED--------KE--CQPKLRRQ-LEDVDYVSVEFEGN 320 (406)
Q Consensus 275 lD~G~~~a~~fl~~~~-~~~i~~--------Kt--Lqe~lq~~-~~~p~Y~~i~~~G~ 320 (406)
...|+..+++||.+++ ..+++. .. |..+|+++ ...|+|+++.++|+
T Consensus 203 ~ek~~~~v~dFI~~qi~~k~L~~~~m~ql~~P~~~L~~lckr~~l~epe~Rll~esGr 260 (333)
T KOG3769|consen 203 LEKGFNFVRDFINDQILSKDLDPREMWQLQWPRRLLSRLCKRRGLKEPESRLLAESGR 260 (333)
T ss_pred HHHHHHHHHHHHHHHhhhhccchHhhccccchHHHHHHHHHHcCCCCchhHHHHHhcc
Confidence 8889999999987765 344442 22 66678877 89999999999984
No 15
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=99.21 E-value=6.2e-12 Score=144.93 Aligned_cols=146 Identities=18% Similarity=0.166 Sum_probs=118.4
Q ss_pred cCCCCccccCc-chhhhHHHHHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCcccccccCCCCCchHHHHHHH
Q 015482 117 SCLPPSRLNNA-DQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQ 195 (406)
Q Consensus 117 ~~lPs~~~~~~-~~~~~~e~l~~l~~~LGy~F~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~~~~~~nnERLEFLGD 195 (406)
...+++++... +..|....+..++..+||.|.. ..++.+|+||-||..+ ....+|+|||||||
T Consensus 1351 ~i~es~~~~~~~~~~~~l~~~~~~e~~l~y~f~~-------------~~~l~~a~th~s~~~~---~~~~C~qrleflgd 1414 (1606)
T KOG0701|consen 1351 DIPESIASPDSIDELRQLLSFGKFEEKLNYRFKL-------------KPYLTQATTHASYIYN---RITDCYQRLEFLGD 1414 (1606)
T ss_pred cccccccccchhHHHHHHHHHHhhhcccchhhhh-------------hhcccccccccccccC---ccchhhhhHHHhHH
Confidence 34455444443 2333333467788999999998 6899999999999764 35679999999999
Q ss_pred HHHHHHHHHHHHhhCCCCChhhHHHHHHHHcCcchHHHHHHHcCCCcccCcCchhh------------h---------hc
Q 015482 196 FVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMD------------R---------LI 254 (406)
Q Consensus 196 aVL~lvvs~~Lf~~yP~~~eG~Ls~~Rs~lVsn~~La~lA~~lGL~~~I~~~~~~~------------~---------~~ 254 (406)
+|+++.+++++|...+...+|.++.+|+++|+|.-.+.+|.+.++++++....... . ..
T Consensus 1415 ~vld~~it~hl~~~~~~~sp~~~td~rsa~vnn~~~a~~av~~~~~K~~~~~~~~l~~~I~~~v~~~~q~~~~~~~~~~e 1494 (1606)
T KOG0701|consen 1415 AVLDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKADLHKFIIAASPGLIHNIDRFVSFQLQSNLDSLFGWEE 1494 (1606)
T ss_pred hhhhhhhhhcccccccccCchhhhhhhhHhhccccchhhHHhhcchhHHHhhccccccchHHHHHHHHhhccccCCCchh
Confidence 99999999999999999999999999999999999999999999999998533100 0 01
Q ss_pred ccCCCChHHhHHHHHHHHHHHhcC
Q 015482 255 RKEREPPVKSVFWALFGAIYLCFG 278 (406)
Q Consensus 255 ~~~~~KiLADvfEALIGAIYlD~G 278 (406)
....+|+++|++|++.||||+|+|
T Consensus 1495 dievpKa~gdi~esiagai~~dsg 1518 (1606)
T KOG0701|consen 1495 DIEVPKALGDIFESIAGAIKLDSG 1518 (1606)
T ss_pred hcccchhhhhhhhcccceeecCcc
Confidence 123599999999999999999999
No 16
>COG1939 Ribonuclease III family protein [Replication, recombination, and repair]
Probab=97.89 E-value=5.9e-05 Score=66.24 Aligned_cols=101 Identities=21% Similarity=0.240 Sum_probs=71.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHcCcchHHHHHHHcCCCcccCcCchhhhhcc-----cCCCC-
Q 015482 187 HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIR-----KEREP- 260 (406)
Q Consensus 187 nERLEFLGDaVL~lvvs~~Lf~~yP~~~eG~Ls~~Rs~lVsn~~La~lA~~lGL~~~I~~~~~~~~~~~-----~~~~K- 260 (406)
==-|+|+||||+++.|-.|+...+- -.+..||+.-.+.||.+.-+.+-..+ .+++.-........| ...+|
T Consensus 15 ~laLAy~GDAV~e~yVR~~~l~~g~-~k~~~lH~~a~~~VsAk~QA~il~~~--~~~Lte~E~~I~KRgRNaks~T~~kn 91 (132)
T COG1939 15 GLALAYLGDAVYELYVREYLLLKGK-TKPNDLHKRATAYVSAKAQALILKAL--LEFLTEEEEEIVKRGRNAKSGTKPKN 91 (132)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhccc-CChHHHHHHHHHHhhHHHHHHHHHHH--HHHhhHHHHHHHHHhcccccCCCCCC
Confidence 3469999999999999999998753 37899999999999999888776553 122221100000001 01122
Q ss_pred ------hHHhHHHHHHHHHHHhcCHHHHHHHHHHhh
Q 015482 261 ------PVKSVFWALFGAIYLCFGFPEVYRVLFEVF 290 (406)
Q Consensus 261 ------iLADvfEALIGAIYlD~G~~~a~~fl~~~~ 290 (406)
-.|.-|||+||.+|+..-.+....++...+
T Consensus 92 ~dv~tYr~sTgfEAliGyLyL~~~~eRL~ell~~~i 127 (132)
T COG1939 92 TDVETYRMSTGFEALIGYLYLTKQEERLEELLNKVI 127 (132)
T ss_pred CChHHHHHhhhHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 368899999999999999988777776554
No 17
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=89.25 E-value=1.5 Score=37.71 Aligned_cols=87 Identities=17% Similarity=0.167 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh--hCCCCChhhHHHHHHHHcCcchHHHHHHHcCCCcccCcCchhhhhcccCCCChHHhHH
Q 015482 189 RLCFLGQFVLELAFCEFFLQ--RYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVF 266 (406)
Q Consensus 189 RLEFLGDaVL~lvvs~~Lf~--~yP~~~eG~Ls~~Rs~lVsn~~La~lA~~lGL~~~I~~~~~~~~~~~~~~~KiLADvf 266 (406)
-|.-+||++++++++-.|-+ -+|. |. -|-|.+|+-.-...||.+.+...-. ...-.|..
T Consensus 2 ~Lak~GDSLvNfl~SlALse~lG~Pt---g~-------rVPnaSLaiAl~~a~L~~~~~PR~d---------kh~kGd~a 62 (120)
T PF11469_consen 2 GLAKFGDSLVNFLFSLALSEYLGRPT---GD-------RVPNASLAIALELAGLSHLLPPRTD---------KHGKGDIA 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTS-----------------HHHHHHHHHHTTGGGCS--CGG---------CCGHHHHH
T ss_pred cHHHHhHHHHHHHHHHHHHHHhCCCC---CC-------CCCChHHHHHHHHHhhhhhCccccc---------ccCccHHH
Confidence 37789999999999888764 3342 22 4778888888888888888764311 23558999
Q ss_pred HHHHHHHHHhcC--HHHHHHHHHHhhCCCC
Q 015482 267 WALFGAIYLCFG--FPEVYRVLFEVFGMDP 294 (406)
Q Consensus 267 EALIGAIYlD~G--~~~a~~fl~~~~~~~i 294 (406)
||+|+-.|+.+- .+++-+++...+..++
T Consensus 63 EA~iAyAWLeg~it~eEaveil~~nl~~dv 92 (120)
T PF11469_consen 63 EALIAYAWLEGKITIEEAVEILKANLTEDV 92 (120)
T ss_dssp HHHHHHHHHTTSS-HHHHHHHHHCT--GGG
T ss_pred HHHHHHHHHhccccHHHHHHHHHhcCchhh
Confidence 999999999986 4577777777765544
No 18
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=88.67 E-value=0.41 Score=44.89 Aligned_cols=43 Identities=9% Similarity=0.029 Sum_probs=34.0
Q ss_pred CCCCCc-hHHHHhhc-CCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCCccc
Q 015482 293 DPEDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMHR 354 (406)
Q Consensus 293 ~i~~Kt-Lqe~lq~~-~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g~~~ 354 (406)
..+.|+ ||||+|.+ ... .|.+++++|+ +|.+.|.+.+..+...
T Consensus 107 ~~DpKS~LQE~~Q~~~~~l-~Y~li~~~Gp------------------dH~~~Ftv~V~V~g~~ 151 (183)
T PHA02701 107 TLNPVSAVNEFCMRTHRPL-EFCETRSGGH------------------DHCPLFTCTIVVSGKV 151 (183)
T ss_pred CCCccHHHHHHHHhcCCCC-eEEEEEeECC------------------CCCceEEEEEEECCEE
Confidence 456699 99999998 445 8999999894 8999999887665333
No 19
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=79.97 E-value=2 Score=40.39 Aligned_cols=41 Identities=15% Similarity=0.100 Sum_probs=29.8
Q ss_pred CCc-hHHHHhhcCCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCCcccc
Q 015482 296 DKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMHRF 355 (406)
Q Consensus 296 ~Kt-Lqe~lq~~~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g~~~~ 355 (406)
.|+ ||||+|++.... |..+.+.|+ +|.+.|.+.|..+...+
T Consensus 111 pKS~LQE~~Qk~~~~~-y~~i~~~Gp------------------~H~p~F~v~V~I~g~~~ 152 (183)
T PHA03103 111 PCTVINEYCQITSRDW-SINITSSGP------------------SHSPTFTASVIISGIKF 152 (183)
T ss_pred hhHHHHHHHHHhCCCe-EEEEEeeCC------------------CCCceEEEEEEECCEEE
Confidence 368 999999883333 666777784 89999998886655444
No 20
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=57.92 E-value=15 Score=27.14 Aligned_cols=38 Identities=24% Similarity=0.194 Sum_probs=27.5
Q ss_pred Cc-hHHHHhhcCCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCCc
Q 015482 297 KE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGM 352 (406)
Q Consensus 297 Kt-Lqe~lq~~~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g~ 352 (406)
++ |+|++|+.+-.|.|......|. .|.+.|.+.+..+.
T Consensus 2 ~~~L~e~~~~~~~~~~y~~~~~~g~------------------~~~~~f~~~v~i~~ 40 (67)
T smart00358 2 KSLLQELAQKRGLPPEYELVKEEGP------------------DHAPRFTVTVKVGG 40 (67)
T ss_pred chHHHHHHHHCCCCCEEEEEeeeCC------------------CCCCcEEEEEEECC
Confidence 45 8999998844899998877773 56667777664443
No 21
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=55.94 E-value=14 Score=27.07 Aligned_cols=37 Identities=27% Similarity=0.248 Sum_probs=27.7
Q ss_pred Cc-hHHHHhhc-CCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCC
Q 015482 297 KE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPG 351 (406)
Q Consensus 297 Kt-Lqe~lq~~-~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g 351 (406)
++ |+|++|+. ...|.|..+...|. .|.+.|.+.+..+
T Consensus 3 ~~~L~e~~~~~~~~~~~y~~~~~~g~------------------~~~~~f~~~v~i~ 41 (68)
T cd00048 3 KSLLQELAQKRGKPLPEYELVEEEGP------------------DHAPRFTVEVTVG 41 (68)
T ss_pred HHHHHHHHHHcCCCCCeEEEeeeeCC------------------CCCCeEEEEEEEC
Confidence 45 99999988 88999998877773 4666776665443
No 22
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=48.30 E-value=24 Score=28.48 Aligned_cols=47 Identities=19% Similarity=0.186 Sum_probs=32.1
Q ss_pred hHHHHhhc-CCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeec--cCCCcccccccccccc
Q 015482 299 CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRAC--VPPGMHRFRGNLWDFD 363 (406)
Q Consensus 299 Lqe~lq~~-~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~--~~~g~~~~~~~~~~~~ 363 (406)
|.|+|+++ .+.|.|.+..+.|+ +|-++|.-. ++..-..+.|.+|-+-
T Consensus 7 L~elC~k~~W~~P~y~l~~~~Gp------------------~~~~~F~ykV~i~~~~~~~~~~~~~~~ 56 (80)
T PF14709_consen 7 LNELCQKNKWGPPVYELVSESGP------------------DHRKLFLYKVVIPGLEYPFEGSIECFG 56 (80)
T ss_pred HHHHHHhcCCCCCeEEEEeccCC------------------CccEEEEEEEEEcCCCCCCcceEEEcc
Confidence 89999988 99999999988884 676666433 3333333455555544
No 23
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=43.84 E-value=22 Score=36.52 Aligned_cols=43 Identities=16% Similarity=0.048 Sum_probs=36.1
Q ss_pred hHHHHhhc-CCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCCcccccccc
Q 015482 299 CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMHRFRGNL 359 (406)
Q Consensus 299 Lqe~lq~~-~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g~~~~~~~~ 359 (406)
||+++|++ ...|.|.++.+.|. .|-|.|..++..+-+...|..
T Consensus 148 L~e~~q~k~~k~P~yelv~E~G~------------------~~~rEFv~q~sv~~~~~~GkG 191 (339)
T KOG3732|consen 148 LQELAQAKKWKLPEYELVQESGV------------------PHRREFVIQCSVENFTEEGKG 191 (339)
T ss_pred HHHHHHHhCCCCCceEEEeccCC------------------CccceEEEEEEecceeeecCC
Confidence 99999988 99999999999994 688889888877766666654
No 24
>PRK02287 hypothetical protein; Provisional
Probab=39.04 E-value=32 Score=32.07 Aligned_cols=27 Identities=26% Similarity=0.112 Sum_probs=23.3
Q ss_pred HhHHHHHHHHHHHhcCHHHHHHHHHHh
Q 015482 263 KSVFWALFGAIYLCFGFPEVYRVLFEV 289 (406)
Q Consensus 263 ADvfEALIGAIYlD~G~~~a~~fl~~~ 289 (406)
=.++||+.+|+|+-+.-+.|.+++..+
T Consensus 107 Ls~vEAlAaaLyI~G~~~~A~~ll~~F 133 (171)
T PRK02287 107 LSSVEALAAALYILGFKEEAEKILSKF 133 (171)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhhC
Confidence 468999999999999999999887644
No 25
>COG2042 Uncharacterized conserved protein [Function unknown]
Probab=28.62 E-value=59 Score=30.44 Aligned_cols=28 Identities=25% Similarity=0.042 Sum_probs=23.8
Q ss_pred HHhHHHHHHHHHHHhcCHHHHHHHHHHh
Q 015482 262 VKSVFWALFGAIYLCFGFPEVYRVLFEV 289 (406)
Q Consensus 262 LADvfEALIGAIYlD~G~~~a~~fl~~~ 289 (406)
.=.++||+++|+|+-+=.+.|..++..+
T Consensus 114 kLss~EAlaAaLYI~G~~deA~~lls~F 141 (179)
T COG2042 114 KLSSAEALAAALYIVGFKDEASELLSKF 141 (179)
T ss_pred hhchHHHHHHHHHHhCcHHHHHHHHhhC
Confidence 3468999999999999899999988754
No 26
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=25.79 E-value=68 Score=28.56 Aligned_cols=29 Identities=21% Similarity=-0.002 Sum_probs=23.4
Q ss_pred hHHhHHHHHHHHHHHhcCHHHHHHHHHHh
Q 015482 261 PVKSVFWALFGAIYLCFGFPEVYRVLFEV 289 (406)
Q Consensus 261 iLADvfEALIGAIYlD~G~~~a~~fl~~~ 289 (406)
..=.++||+.+|+|+.+=.+.|.+++..+
T Consensus 64 ~kLscvEAlAAaLyI~G~~~~A~~lL~~F 92 (127)
T PF04034_consen 64 CKLSCVEALAAALYILGFKEQAEELLSKF 92 (127)
T ss_pred ccccHHHHHHHHHHHcCCHHHHHHHHhcC
Confidence 33468999999999998888888877643
No 27
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=25.30 E-value=29 Score=24.11 Aligned_cols=12 Identities=25% Similarity=0.269 Sum_probs=9.6
Q ss_pred hHHhHHHHHHHH
Q 015482 261 PVKSVFWALFGA 272 (406)
Q Consensus 261 iLADvfEALIGA 272 (406)
.-.|++||+||+
T Consensus 24 tpEDAvEaLi~~ 35 (35)
T PF08383_consen 24 TPEDAVEALIGN 35 (35)
T ss_pred CHHHHHHHHhcC
Confidence 447999999984
Done!