Query 015482
Match_columns 406
No_of_seqs 340 out of 1565
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 13:23:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015482.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015482hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n3w_A Ribonuclease III; nucle 100.0 4.1E-40 1.4E-44 316.1 13.0 180 136-352 28-219 (248)
2 1o0w_A Ribonuclease III, RNAse 100.0 4.2E-39 1.4E-43 309.3 11.4 189 133-352 18-221 (252)
3 2nug_A Ribonuclease III, RNAse 100.0 2.5E-38 8.5E-43 297.9 12.2 176 135-353 3-193 (221)
4 2a11_A Ribonuclease III, RNAse 100.0 1.8E-38 6.1E-43 302.7 9.0 182 136-352 7-203 (242)
5 3o2r_A Ribonuclease III; struc 100.0 6.2E-37 2.1E-41 279.1 13.9 141 136-295 28-168 (170)
6 3c4b_A Endoribonuclease dicer; 100.0 8.5E-36 2.9E-40 287.4 15.0 155 136-306 15-210 (265)
7 3rv0_A K. polysporus DCR1; RNA 100.0 6.9E-35 2.4E-39 291.6 8.4 171 137-320 86-283 (341)
8 3rv1_A K. polysporus DCR1; RNA 100.0 2.4E-33 8.2E-38 268.9 9.4 145 137-294 86-240 (246)
9 2qvw_A GLP_546_48378_50642; di 100.0 1.4E-28 4.9E-33 267.4 11.6 145 135-295 594-753 (756)
10 2qvw_A GLP_546_48378_50642; di 99.9 9.4E-29 3.2E-33 268.9 8.0 185 101-306 243-461 (756)
11 1u61_A Hypothetical protein; s 99.9 1.3E-22 4.6E-27 178.8 10.2 106 184-290 9-126 (138)
12 2gsl_A Hypothetical protein; a 99.8 1.7E-20 5.8E-25 165.1 8.1 108 184-293 12-129 (137)
13 2dmy_A Spermatid perinuclear R 95.0 0.024 8E-07 46.4 4.6 68 296-382 18-91 (97)
14 3adj_A F21M12.9 protein; HYL1, 94.8 0.014 4.8E-07 45.4 2.6 38 297-352 7-46 (76)
15 2b7t_A Double-stranded RNA-spe 94.6 0.023 7.9E-07 43.8 3.4 45 294-357 4-49 (73)
16 2khx_A Ribonuclease 3; drosha, 94.6 0.019 6.6E-07 45.8 2.9 42 295-354 2-50 (85)
17 3adg_A F21M12.9 protein; HYL1, 94.5 0.018 6E-07 44.4 2.5 41 294-353 3-45 (73)
18 1di2_A XLRBPA, double stranded 94.5 0.02 6.7E-07 43.6 2.7 38 297-352 3-42 (69)
19 2dix_A Interferon-inducible do 94.3 0.027 9.2E-07 44.8 3.2 40 295-352 9-49 (84)
20 1uhz_A Staufen (RNA binding pr 94.2 0.028 9.5E-07 45.3 3.2 40 295-352 7-48 (89)
21 3adl_A RISC-loading complex su 93.9 0.034 1.2E-06 44.7 3.2 41 295-353 16-58 (88)
22 1t4o_A Ribonuclease III; RNT1P 93.8 0.027 9.3E-07 47.9 2.4 41 294-353 8-49 (117)
23 2cpn_A TAR RNA-binding protein 93.8 0.035 1.2E-06 44.7 3.0 38 297-352 19-58 (89)
24 3llh_A RISC-loading complex su 93.8 0.026 8.8E-07 45.5 2.2 41 295-353 15-56 (90)
25 1ekz_A DSRBDIII, maternal effe 93.6 0.027 9.2E-07 43.7 1.9 39 295-352 8-48 (76)
26 1t4n_A Ribonuclease III; DSRBD 93.3 0.03 1E-06 45.9 1.8 40 295-353 7-47 (94)
27 2l2n_A Hyponastic leave 1; DSR 92.9 0.069 2.3E-06 44.1 3.5 43 293-354 16-60 (103)
28 1x49_A Interferon-induced, dou 92.9 0.045 1.5E-06 44.8 2.3 40 297-354 17-57 (97)
29 2l33_A Interleukin enhancer-bi 92.6 0.062 2.1E-06 43.6 2.7 45 295-358 15-60 (91)
30 1whq_A RNA helicase A; double- 92.4 0.08 2.7E-06 43.5 3.1 40 294-352 6-46 (99)
31 1uil_A Double-stranded RNA-bin 90.1 0.15 5.1E-06 42.8 2.7 35 297-350 29-64 (113)
32 1qu6_A Protein kinase PKR; dsR 85.8 0.39 1.3E-05 43.0 2.7 40 297-354 16-56 (179)
33 1whn_A Hypothetical protein ri 85.7 0.19 6.4E-06 43.3 0.5 43 292-355 24-68 (128)
34 1x47_A DGCR8 protein; structur 84.9 0.39 1.3E-05 39.1 2.1 23 297-319 19-43 (98)
35 1ztd_A Hypothetical protein PF 84.2 2.2 7.5E-05 35.9 6.3 89 186-294 11-103 (133)
36 2ljh_A Double-stranded RNA-spe 84.0 0.34 1.2E-05 40.8 1.4 41 297-359 40-81 (114)
37 1x48_A Interferon-induced, dou 81.1 0.65 2.2E-05 37.0 1.9 40 295-354 7-48 (88)
38 3p1x_A Interleukin enhancer-bi 80.3 1.3 4.6E-05 34.0 3.4 42 297-357 7-49 (75)
39 2b7v_A Double-stranded RNA-spe 68.4 3.9 0.00013 30.7 3.3 37 299-357 10-46 (71)
40 2yt4_A Protein DGCR8; DSRBD, R 54.7 5.6 0.00019 37.0 2.3 23 297-319 25-49 (232)
41 2l3j_A Double-stranded RNA-spe 45.4 8.1 0.00028 35.9 1.8 43 295-359 162-205 (236)
42 2l3j_A Double-stranded RNA-spe 41.7 15 0.0005 34.1 2.9 46 294-358 4-50 (236)
43 2yt4_A Protein DGCR8; DSRBD, R 34.4 12 0.00042 34.7 1.1 37 294-349 130-170 (232)
44 1v18_B APC protein, adenomatou 27.9 22 0.00076 24.9 1.3 22 10-31 14-35 (47)
No 1
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=100.00 E-value=4.1e-40 Score=316.14 Aligned_cols=180 Identities=19% Similarity=0.283 Sum_probs=132.1
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCcccccccCCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCCh
Q 015482 136 LLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESP 215 (406)
Q Consensus 136 l~~l~~~LGy~F~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~~~~~~nnERLEFLGDaVL~lvvs~~Lf~~yP~~~e 215 (406)
+..++++|||+|+| ++||.+||||+||.++ .||||||||||+||+++|+++||.+||+.++
T Consensus 28 l~~le~~lgy~F~~-------------~~LL~~AlTH~S~~~~------~~neRLefLGDavL~~~v~~~L~~~~p~~~e 88 (248)
T 3n3w_A 28 IEKLEQSLTYEFKD-------------KNLLIHALTHKSFKKS------YNNERLEFLGDAVLDLVVGEYLFHKFAKDAE 88 (248)
T ss_dssp HHHHHHHHTCCCSS-------------HHHHHHHTBCTTSBTT------BCSHHHHHHHHHHHHHHHHHHHHHHTTTCSC
T ss_pred HHHHHHHHCCCCCC-------------HHHHHHHhcCcCCCCC------CCcHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 57899999999998 8999999999999763 6999999999999999999999999999999
Q ss_pred hhHHHHHHHHcCcchHHHHHHHcCCCcccCcCchhhhhcccCCCChHHhHHHHHHHHHHHhcCHHHHHHHHHHhhCCCCC
Q 015482 216 APMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPE 295 (406)
Q Consensus 216 G~Ls~~Rs~lVsn~~La~lA~~lGL~~~I~~~~~~~~~~~~~~~KiLADvfEALIGAIYlD~G~~~a~~fl~~~~~~~i~ 295 (406)
|.|+.+|+.+|||++|+.+|+++||++||+.++++...+++.+++++||+|||+|||||+|+|++.|++|+.+++.+.++
T Consensus 89 g~Ls~~r~~lVs~~~La~~a~~lgL~~~l~~~~~e~~~~g~~~~~~lad~fEAliGAiyld~G~~~~~~~i~~~~~~~l~ 168 (248)
T 3n3w_A 89 GDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFP 168 (248)
T ss_dssp CCHHHHHHHHHSHHHHHHHHHHTTGGGTCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCHHHHHHHHHHcCcHHHhhcCchhhhcCCCCCccHHHHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988777777789999999999999999999999999999999865443
Q ss_pred C----------Cc-hHHHHhhc-CCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCCc
Q 015482 296 D----------KE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGM 352 (406)
Q Consensus 296 ~----------Kt-Lqe~lq~~-~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g~ 352 (406)
. |+ |||++|++ ...|.|++++++|+ +|.+.|.+.|..+.
T Consensus 169 ~~~~~~~~~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp------------------~h~~~F~v~v~v~g 219 (248)
T 3n3w_A 169 QIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGP------------------DHLKQFEIALMLDG 219 (248)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HhhccccccCHHHHHHHHHHHcCCCCCceEEeeccCC------------------CCCceEEEEEEECC
Confidence 2 77 99999988 78899999988884 67788877775554
No 2
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=100.00 E-value=4.2e-39 Score=309.30 Aligned_cols=189 Identities=21% Similarity=0.310 Sum_probs=165.2
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCccccccc---CCCCCchHHHHHHHHHHHHHHHHHHHhh
Q 015482 133 DEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKAR---HVRAGHSRLCFLGQFVLELAFCEFFLQR 209 (406)
Q Consensus 133 ~e~l~~l~~~LGy~F~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~~---~~~~nnERLEFLGDaVL~lvvs~~Lf~~ 209 (406)
...+..|+++|||+|+| ++||.+||||+||.++... ....||||||||||+||+++|+++||.+
T Consensus 18 ~~~~~~l~~~lgy~f~~-------------~~LL~~AlTH~S~~~~~~~~~~~~~~~nerLefLGDavL~l~v~~~L~~~ 84 (252)
T 1o0w_A 18 RKIVEEFQKETGINFKN-------------EELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKK 84 (252)
T ss_dssp HHHHHHHHHHHCCCCSS-------------HHHHHHHHBCHHHHHHHHHTTCTTCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCC-------------HHHHHHHhCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678899999999998 8999999999999764210 0113899999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHcCcchHHHHHHHcCCCcccCcCchhhhhcccCCCChHHhHHHHHHHHHHHhcCHHHHHHHHHHh
Q 015482 210 YPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEV 289 (406)
Q Consensus 210 yP~~~eG~Ls~~Rs~lVsn~~La~lA~~lGL~~~I~~~~~~~~~~~~~~~KiLADvfEALIGAIYlD~G~~~a~~fl~~~ 289 (406)
||+.++|.|+.+|+.+|||++|+.+|+++||++||+.++++...+++.+++++||+|||+|||||+|+|++.|++||.++
T Consensus 85 ~p~~~eg~Ls~~r~~lV~~~~la~~a~~lgL~~~l~~~~~e~~~~~~~~~~~lad~~EAliGAiyld~g~~~~~~~i~~~ 164 (252)
T 1o0w_A 85 YPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADAFEALLAAIYLDQGYEKIKELFEQE 164 (252)
T ss_dssp CTTSCHHHHHHHHHHHTSHHHHHHHHHHTTHHHHCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCHHHHHHHHHHcCcHHhhccCchhhhcCCCCCccHHHhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887766677789999999999999999999999999999988
Q ss_pred hCCC----------CCCCc-hHHHHhhc-CCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCCc
Q 015482 290 FGMD----------PEDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGM 352 (406)
Q Consensus 290 ~~~~----------i~~Kt-Lqe~lq~~-~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g~ 352 (406)
+.+. .+.|+ |||++|++ ...|.|++++++|+ +|.+.|.+.|..+.
T Consensus 165 ~~~~~~~~~~~~~~~dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp------------------~h~~~F~v~v~v~g 221 (252)
T 1o0w_A 165 FEFYIEKIMKGEMLFDYKTALQEIVQSEHKVPPEYILVRTEKN------------------DGDRIFVVEVRVNG 221 (252)
T ss_dssp HHHHHHHHHTTCCCSCHHHHHHHHHHHHHSSCCEEEEEEEECC------------------TTSCEEEEEEEETT
T ss_pred HHHHHHHhhhcccccCHHHHHHHHHHHcCCCCceEEEEeeeCC------------------CCCCeEEEEEEECC
Confidence 7532 22377 99999998 77999999998884 68888888775544
No 3
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=100.00 E-value=2.5e-38 Score=297.94 Aligned_cols=176 Identities=20% Similarity=0.241 Sum_probs=156.5
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCcccccccCCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 015482 135 YLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRES 214 (406)
Q Consensus 135 ~l~~l~~~LGy~F~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~~~~~~nnERLEFLGDaVL~lvvs~~Lf~~yP~~~ 214 (406)
.+..++++|||+|+| ++||.+||||+||.++ .||||||||||+||+++++++||.+||+.+
T Consensus 3 ~~~~l~~~lg~~f~~-------------~~ll~~AlTh~S~~~~------~~nerLefLGDavL~~~v~~~L~~~~p~~~ 63 (221)
T 2nug_A 3 MLEQLEKKLGYTFKD-------------KSLLEKALTHVSYSKK------EHYETLEFLGDALVNFFIVDLLVQYSPNKR 63 (221)
T ss_dssp CHHHHHHHHTCCCSS-------------HHHHHHHHBCTTTCSS------SCSHHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred HHHHHHHHhCCCcCC-------------HHHHHHHhCCCCCCCC------CCchHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 356799999999998 8999999999999763 589999999999999999999999999999
Q ss_pred hhhHHHHHHHHcCcchHHHHHHHcCCCcccCcCchhhhhcccCCCChHHhHHHHHHHHHHHhcCHHH--HHHHHHHhhCC
Q 015482 215 PAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPE--VYRVLFEVFGM 292 (406)
Q Consensus 215 eG~Ls~~Rs~lVsn~~La~lA~~lGL~~~I~~~~~~~~~~~~~~~KiLADvfEALIGAIYlD~G~~~--a~~fl~~~~~~ 292 (406)
+|.|+.+|+.+|||.+|+.+|+++||++||+.++++.. ++++||+|||+|||||+|+|++. |++|+.+++.+
T Consensus 64 ~g~Ls~~r~~lV~~~~la~~a~~l~l~~~l~~~~~~~~------~~~lad~~EAliGAiyld~g~~~~~~~~~i~~~~~~ 137 (221)
T 2nug_A 64 EGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKIN------ETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKE 137 (221)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHTTTGGGTCBSCTTCCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHcChHHhhccCCCccc------chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999877542 78999999999999999999998 99999988744
Q ss_pred CCC-----------CCc-hHHHHhhc-CCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCCcc
Q 015482 293 DPE-----------DKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMH 353 (406)
Q Consensus 293 ~i~-----------~Kt-Lqe~lq~~-~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g~~ 353 (406)
.++ .|+ |||++|++ ...|.|++++++|+ +|.+.|.+.|..+..
T Consensus 138 ~~~~~~~~~~~~~~pks~LqE~~q~~~~~~p~Y~~~~~~G~------------------~h~~~F~v~v~v~~~ 193 (221)
T 2nug_A 138 DILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGP------------------HHKKKFIVEAKIKEY 193 (221)
T ss_dssp HHHHHHHTTCSCCCHHHHHHHHHHHHHSCCCEEEEEEEESC------------------GGGCEEEEEEEETTE
T ss_pred HHhhhhhccccccCHHHHHHHHHHHcCCCCceEEEEEeeCC------------------CCCceEEEEEEECCE
Confidence 322 267 99999988 78899999999994 788888887655443
No 4
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.8e-38 Score=302.70 Aligned_cols=182 Identities=23% Similarity=0.265 Sum_probs=130.0
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCcccccccCCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCCh
Q 015482 136 LLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESP 215 (406)
Q Consensus 136 l~~l~~~LGy~F~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~~~~~~nnERLEFLGDaVL~lvvs~~Lf~~yP~~~e 215 (406)
+..++++|||+| | ++||.+||||+||.+++ +...||||||||||+||+++++++||.+||+.++
T Consensus 7 l~~l~~~lgy~f-~-------------~~ll~~AlTH~S~~~~~--~~~~~nerLefLGDavL~~~v~~~L~~~~p~~~~ 70 (242)
T 2a11_A 7 RQPLLDALGVDL-P-------------DELLSLALTHRSYAYEN--GGLPTNERLEFLGDAVLGLTITDALFHRHPDRSE 70 (242)
T ss_dssp CHHHHHHHTSCC-C-------------HHHHHHHTBCHHHHHHT--TSCCCTHHHHHHHHHHHHHHHHHHHHHHCTTSCH
T ss_pred HHHHHHHHCCCC-C-------------HHHHHHHhCCcCccccC--CCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 467899999999 8 89999999999997542 2356999999999999999999999999999999
Q ss_pred hhHHHHHHHHcCcchHHHHHHHc---CCCcccCcCchhhhhcccCCCChHHhHHHHHHHHHHHhcCHHHHHHHHHHhhCC
Q 015482 216 APMRERVFGLIGRRNLPKWIKAA---SLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGM 292 (406)
Q Consensus 216 G~Ls~~Rs~lVsn~~La~lA~~l---GL~~~I~~~~~~~~~~~~~~~KiLADvfEALIGAIYlD~G~~~a~~fl~~~~~~ 292 (406)
|.|+.+|+.+|||++|+.+|+++ ||++||+.++++...+++.+++++||+|||+|||||+|+|++.|++|+.+++.+
T Consensus 71 g~Ls~~r~~lV~~~~la~~a~~l~~~gL~~~l~~~~~e~~~~~~~~~~~lad~~EAliGAiyld~g~~~~~~~i~~~~~~ 150 (242)
T 2a11_A 71 GDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLGAIYLQHGMEKAREVILRLFGP 150 (242)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHSSSCSGGGCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHhhhhChHHHhhcCchhhhcCCCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999 999999999987766677789999999999999999999999999999988743
Q ss_pred C----------CCCCc-hHHHHhhc-CCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCCc
Q 015482 293 D----------PEDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGM 352 (406)
Q Consensus 293 ~----------i~~Kt-Lqe~lq~~-~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g~ 352 (406)
. .+.|+ |||++|++ ...|.|++++ +|+ +|.+.|.+.|..+.
T Consensus 151 ~~~~~~~~~~~~dpkt~Lqe~~q~~~~~~p~Y~~~~-~Gp------------------~h~~~F~v~v~v~g 203 (242)
T 2a11_A 151 LLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTS-TGP------------------DHDKEFTAVVVVMD 203 (242)
T ss_dssp HHHHTTC-----------------------------------------------------------------
T ss_pred HHHHhhhccccCChHHHHHHHHHHhCCCCCeEEEec-cCC------------------CCCCeEEEEEEECC
Confidence 2 23378 99999988 6789999887 773 67778877765543
No 5
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B*
Probab=100.00 E-value=6.2e-37 Score=279.09 Aligned_cols=141 Identities=21% Similarity=0.335 Sum_probs=133.1
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCcccccccCCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCCh
Q 015482 136 LLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESP 215 (406)
Q Consensus 136 l~~l~~~LGy~F~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~~~~~~nnERLEFLGDaVL~lvvs~~Lf~~yP~~~e 215 (406)
+.+++++|||+|+| ++||.+||||+||.++ .+|||||||||+||+++++++||.+||+.++
T Consensus 28 l~~le~~lgy~F~d-------------~~LL~~AlTH~S~~~~------~~neRLEfLGDaVL~l~vs~~L~~~~P~~~e 88 (170)
T 3o2r_A 28 IEKLEQSLTYEFKD-------------KNLLIHALTHKSFKKS------YNNERLEFLGDAVLDLVVGEYLFHKFAKDAE 88 (170)
T ss_dssp HHHHHHHHTCCCSS-------------HHHHHHHTBCTTSSTT------CCSHHHHHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHhCCCCCC-------------HHHHHHHhcCCCCCCC------cchHHHHHHHHHHHHHHHHHHHHHhCCCCCh
Confidence 67899999999998 8999999999999762 6999999999999999999999999999999
Q ss_pred hhHHHHHHHHcCcchHHHHHHHcCCCcccCcCchhhhhcccCCCChHHhHHHHHHHHHHHhcCHHHHHHHHHHhhCCCCC
Q 015482 216 APMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPE 295 (406)
Q Consensus 216 G~Ls~~Rs~lVsn~~La~lA~~lGL~~~I~~~~~~~~~~~~~~~KiLADvfEALIGAIYlD~G~~~a~~fl~~~~~~~i~ 295 (406)
|.|+.+|+.+|||++|+.+|+++||+++|++++++...+++.+++++||+|||+|||||+|+|++.|++|+.+++.+.++
T Consensus 89 g~Lt~~r~~lVs~~~La~ia~~lgL~~~l~~~~~~~~~~~~~~~~ilad~fEAliGAiylD~G~~~a~~~i~~~~~~~~~ 168 (170)
T 3o2r_A 89 GDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFP 168 (170)
T ss_dssp HHHHHHHHHHSSHHHHHHHHHHTTGGGTCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHCHHHHHHHHHHcCcHHhhhcCcchhhcCCCCcchHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999988777777789999999999999999999999999999999876654
No 6
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=100.00 E-value=8.5e-36 Score=287.36 Aligned_cols=155 Identities=17% Similarity=0.260 Sum_probs=133.7
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCcccccccCCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCCh
Q 015482 136 LLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESP 215 (406)
Q Consensus 136 l~~l~~~LGy~F~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~~~~~~nnERLEFLGDaVL~lvvs~~Lf~~yP~~~e 215 (406)
+..++++|||+|+| +.||.+||||+||.++ ....||||||||||+||+++|+++||.+||+.++
T Consensus 15 l~~le~~lgy~F~~-------------~~LL~~AlTH~S~~~~---~~~~~neRLEfLGDaVL~l~v~~~L~~~~p~~~~ 78 (265)
T 3c4b_A 15 FETFEKKINYRFKN-------------KAYLLQAFTHASYHYN---TITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 78 (265)
T ss_dssp HHHHHHHHTCCCSS-------------HHHHHHHHBCTTCTTC---CSSCCSHHHHHHHHHHHHHHHHHHHHHCTTCCCH
T ss_pred HHHHHHHhCCccCC-------------HHHHHHHhcCcCcCCC---CCCCchHhHHHHhHHHHHHHHHHHHHHhCCCCCH
Confidence 57799999999998 8999999999999764 2346999999999999999999999999999999
Q ss_pred hhHHHHHHHHcCcchHHHHHHHcCCCcccCcCchh--------------------------------hhhcccCCCChHH
Q 015482 216 APMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEM--------------------------------DRLIRKEREPPVK 263 (406)
Q Consensus 216 G~Ls~~Rs~lVsn~~La~lA~~lGL~~~I~~~~~~--------------------------------~~~~~~~~~KiLA 263 (406)
|.|+.+|+++|||.+|+.+|+++||++||++.... ...+++..+|++|
T Consensus 79 g~Lt~lrs~lV~~~~La~~a~~lgl~~~l~~~~~~l~~~i~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~la 158 (265)
T 3c4b_A 79 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMG 158 (265)
T ss_dssp HHHHHHHHHHSSHHHHHHHHHHTTGGGTCBCCCHHHHHHHHHHHHHHHHHHC------------------CCSCCCHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHcChHHHHHhcChhHHHHHHHHHHHHhhhhhhcchhHHhhhcchhhhhhcccccchHHH
Confidence 99999999999999999999999999999853211 1223456789999
Q ss_pred hHHHHHHHHHHHhcCH--HHHHHHHHHhhCCCCC------CCc-hHHHHhhc
Q 015482 264 SVFWALFGAIYLCFGF--PEVYRVLFEVFGMDPE------DKE-CQPKLRRQ 306 (406)
Q Consensus 264 DvfEALIGAIYlD~G~--~~a~~fl~~~~~~~i~------~Kt-Lqe~lq~~ 306 (406)
|+|||+|||||+|+|+ +.|++||.+++.+.++ .|+ +|++.|..
T Consensus 159 D~~EAliGAiylD~G~~~~~~~~~i~~~~~~~i~~~~~~~~k~~l~el~~~~ 210 (265)
T 3c4b_A 159 DIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFSANVPRSPVRELLEME 210 (265)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHC
T ss_pred HHHHHHhhheeeecCCCHHHHHHHHHHHHHHHHHhHhhcCCCCHHHHHHHhc
Confidence 9999999999999998 8999999988866543 267 88887654
No 7
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=6.9e-35 Score=291.55 Aligned_cols=171 Identities=16% Similarity=0.190 Sum_probs=121.2
Q ss_pred HHHHHHhCCC-CCCCCCCCCCCCCCChHHHHHHHhcCCCccccccc-----CCCCCchHHHHHHHHHHHHHHHHHHHhhC
Q 015482 137 LEAKQALGYS-LEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKAR-----HVRAGHSRLCFLGQFVLELAFCEFFLQRY 210 (406)
Q Consensus 137 ~~l~~~LGy~-F~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~~-----~~~~nnERLEFLGDaVL~lvvs~~Lf~~y 210 (406)
..++++|||+ |+| ++||.+||||+||.++... ....+|||||||||+||+++++++||.+|
T Consensus 86 ~~lE~~igy~~F~d-------------~~LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDavL~l~vs~~L~~~~ 152 (341)
T 3rv0_A 86 TDVDMFIKYPVVYD-------------ENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRF 152 (341)
T ss_dssp CTTGGGCSSCCCSC-------------HHHHHHHHCCCCCC---CCSCHHHHGGGCTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHhcCCCCcCC-------------HHHHHHHhcCcCccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4578899999 998 8999999999999864211 12468999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHcCcchHHHHHHHcCCCcccCcCchhhhh-cccCCCChHHhHHHHHHHHHHHhc---CHHHHHHHH
Q 015482 211 PRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRL-IRKEREPPVKSVFWALFGAIYLCF---GFPEVYRVL 286 (406)
Q Consensus 211 P~~~eG~Ls~~Rs~lVsn~~La~lA~~lGL~~~I~~~~~~~~~-~~~~~~KiLADvfEALIGAIYlD~---G~~~a~~fl 286 (406)
|+.++|.|+.+|+.+|||.+|+.+|+++||+++|+++.+.... ++..+++++||+|||+|||||+|+ |++.|++|+
T Consensus 153 P~~~eG~Lt~lr~~lVs~~~La~iA~~lgL~~~l~~~~g~~~~~~~~~~~~ilaD~fEAlIGAIylD~~~~G~~~a~~fi 232 (341)
T 3rv0_A 153 PSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQGNIATPTRVVKDKMSKRYADCVEAYIGALVIDRFGTEFLDIKEWL 232 (341)
T ss_dssp TTCCHHHHHHHHHHHHSHHHHHHHHHHTTTTTTTCCSSCCC----CCHHHHHHHHHHHHHHHHHHHHHCSSTTHHHHHHH
T ss_pred CCCChhHHHHHHHHHhCHHHHHHHHHHcCcHHHhhhcCChhhhccCCccccHHHHHHHHHHHHHhhcCccCCHHHHHHHH
Confidence 9999999999999999999999999999999999975332211 122357899999999999999999 999999999
Q ss_pred HHhhCCC--------------CCCCc-hHHHHhhc-CC-CCceEEEeeeCC
Q 015482 287 FEVFGMD--------------PEDKE-CQPKLRRQ-LE-DVDYVSVEFEGN 320 (406)
Q Consensus 287 ~~~~~~~--------------i~~Kt-Lqe~lq~~-~~-~p~Y~~i~~~G~ 320 (406)
.+++.+. .+.|+ ||||+|++ .+ .|.|++++++|+
T Consensus 233 ~~l~~~~l~~~~~~~~~~~~~~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~Gp 283 (341)
T 3rv0_A 233 EELSEKKLAKSSQMVIKEPLNKNAKNELAELLQINKLGHKLHYRKLTEMPP 283 (341)
T ss_dssp HHHTHHHHHCGGGC-------------------------------------
T ss_pred HHHHHHHHHHHhhhhhccccccCHHHHHHHHHHHcCCCCCceEEEEeccCC
Confidence 9876432 13388 99999987 34 469999887773
No 8
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora}
Probab=99.98 E-value=2.4e-33 Score=268.92 Aligned_cols=145 Identities=17% Similarity=0.221 Sum_probs=118.0
Q ss_pred HHHHHHhCCC-CCCCCCCCCCCCCCChHHHHHHHhcCCCcccccc-----cCCCCCchHHHHHHHHHHHHHHHHHHHhhC
Q 015482 137 LEAKQALGYS-LEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKA-----RHVRAGHSRLCFLGQFVLELAFCEFFLQRY 210 (406)
Q Consensus 137 ~~l~~~LGy~-F~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~-----~~~~~nnERLEFLGDaVL~lvvs~~Lf~~y 210 (406)
..++++|||+ |+| +.||.+||||+||.++.. .....+|||||||||+||+++++++||.+|
T Consensus 86 ~~lE~~lgY~~F~d-------------~~LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDaVL~l~vs~~L~~~~ 152 (246)
T 3rv1_A 86 TDVDMFIKYPVVYD-------------ENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRF 152 (246)
T ss_dssp CGGGGGCSSCCCSC-------------HHHHHHTTCCCC--------------CCCSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCCCcCC-------------HHHHHHHHcCCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4578899999 999 899999999999976421 123569999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHcCcchHHHHHHHcCCCcccCcCchhhhh-cccCCCChHHhHHHHHHHHHHHhc-C--HHHHHHHH
Q 015482 211 PRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRL-IRKEREPPVKSVFWALFGAIYLCF-G--FPEVYRVL 286 (406)
Q Consensus 211 P~~~eG~Ls~~Rs~lVsn~~La~lA~~lGL~~~I~~~~~~~~~-~~~~~~KiLADvfEALIGAIYlD~-G--~~~a~~fl 286 (406)
|+.+||.|+.+|+.+|||++|+.+|+++||++||+++.+.... .+..+++++||+|||+|||||+|+ | ++.|++|+
T Consensus 153 P~~~eG~Lt~lRs~lVsn~~La~iA~~lgL~~~l~~~~g~~~~~~~~~~~~ilAD~fEAlIGAIylD~~g~~l~~v~~~l 232 (246)
T 3rv1_A 153 PSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQGNIATPTRVVKDKMSKRYADCVQAYIGALVIDRFGTEFLDIKEWL 232 (246)
T ss_dssp TTCCHHHHHHHHHHHHSHHHHHHHHHHTTSHHHHCSSCC-----------CHHHHHHHHHHHHHHHHHCSSTTHHHHHHH
T ss_pred CCCChhHHHHHHHHHhCHHHHHHHHHHCCcHHHHhhcCCHhhhccCcccccHHHHHHHHHHHHHhHcCCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999975332221 122468999999999999999998 4 89999999
Q ss_pred HHhhCCCC
Q 015482 287 FEVFGMDP 294 (406)
Q Consensus 287 ~~~~~~~i 294 (406)
.+++.|.+
T Consensus 233 ~~L~~p~l 240 (246)
T 3rv1_A 233 EELSEKKL 240 (246)
T ss_dssp HHHTHHHH
T ss_pred HHHHHHHH
Confidence 99986654
No 9
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=99.95 E-value=1.4e-28 Score=267.41 Aligned_cols=145 Identities=16% Similarity=0.100 Sum_probs=124.7
Q ss_pred HHHHHHHHhCCCCCCC----------CCCCCCCCCCCh---HHHHHHHhcCCCcccccccCCCCCchHHHHHHHHHHHHH
Q 015482 135 YLLEAKQALGYSLEPS----------DQLGDDNPAKHF---DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELA 201 (406)
Q Consensus 135 ~l~~l~~~LGy~F~~~----------~~~~~~~~~~~~---~~LL~~ALTH~S~~~~~~~~~~~nnERLEFLGDaVL~lv 201 (406)
.+..+|++|||+|+|+ .++...=+.... ++||.+||||+| |||||||||+||+++
T Consensus 594 ~~~~lE~~lgY~F~~~~~~~~~~~L~~~~l~~i~~~~~~~~~~LL~~AlTH~S------------neRLEfLGDaVL~l~ 661 (756)
T 2qvw_A 594 VLALYEKILAYESSGGSKHIAAQTVSRSLAVPIPSGTIPFLIRLLQIALTPHV------------YQKLELLGDAFLKCS 661 (756)
T ss_dssp HHHHHHHHHSSCCCCSSHHHHHHHHHHTTCSCCCSSCHHHHHHHHHHHHSTGG------------GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCccCcchhhhHhhhhhhhccccccccccccHHHHHHHhcCcc------------chHHHHHHHHHHHHH
Confidence 4788999999999971 000000000001 589999999998 799999999999999
Q ss_pred HHHHHHhhCCCCChhhHHHHHHHHcCcchHHHHHHHcC--CCcccCcCchhhhhcccCCCChHHhHHHHHHHHHHHhcCH
Q 015482 202 FCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAAS--LQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGF 279 (406)
Q Consensus 202 vs~~Lf~~yP~~~eG~Ls~~Rs~lVsn~~La~lA~~lG--L~~~I~~~~~~~~~~~~~~~KiLADvfEALIGAIYlD~G~ 279 (406)
++++||++||+.+||.|+++|+++|||++|+.+|+++| |++||+.++++.. .++|++||+|||+|||||+|+|+
T Consensus 662 vs~~L~~~~p~~~eG~Lt~lrs~lV~~~~La~~a~~lg~~L~~~l~~~~~e~~----~~~kilaD~~EAliGAiylD~G~ 737 (756)
T 2qvw_A 662 LALHLHALHPTLTEGALTRMRQSAETNSVLGRLTKRFPSVVSEVIIESHPKIQ----PDSKVYGDTFEAILAAILLACGE 737 (756)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHHHTTSHHHHHHHHHTSCTHHHHHHHHHSTTCC----TTCSHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHhCCCCChHHHHHHHHHHhCChHHHHHHHHhcccHHHHHhcCchhhc----CCccHHHHHHHHHHHHHHHhCCH
Confidence 99999999999999999999999999999999999999 9999999877643 46899999999999999999999
Q ss_pred HHHHHHHHHhhCCCCC
Q 015482 280 PEVYRVLFEVFGMDPE 295 (406)
Q Consensus 280 ~~a~~fl~~~~~~~i~ 295 (406)
+.|++|+.+++.+.++
T Consensus 738 ~~a~~~v~~~~~~~l~ 753 (756)
T 2qvw_A 738 EAAGAFVREHVLPQVV 753 (756)
T ss_dssp HHHHHHHHHHTGGGCC
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999977664
No 10
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=99.95 E-value=9.4e-29 Score=268.88 Aligned_cols=185 Identities=15% Similarity=0.109 Sum_probs=140.8
Q ss_pred hccCcccccccccc------cccCCCCccccCcchhhhHHHHHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCC
Q 015482 101 FLKSPQLSLKSFPL------LSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPF 174 (406)
Q Consensus 101 ~l~~p~~~l~~lp~------~~~~lPs~~~~~~~~~~~~e~l~~l~~~LGy~F~~~~~~~~~~~~~~~~~LL~~ALTH~S 174 (406)
++..+-|.+..+|. ...++|++++|+++..-+.+ ++++ .|.. ..+++..+++|+|+++
T Consensus 243 ~L~PELC~vt~Lp~sl~~~~~~~~lPsil~rie~ll~a~~---al~~----~~p~---------~~~i~~~~leAlT~~~ 306 (756)
T 2qvw_A 243 FLPPELCLLLPDEFDLIRVQALQFLPEIAKHICDIQNTIC---ALDK----SFPD---------CGRIGGERYFAITAGL 306 (756)
T ss_dssp EECTTTCEECCTTSCTTHHHHHTTHHHHHHHHHHHHHHHH---HHGG----GSCC---------CSCCHHHHHHHHHHHH
T ss_pred eeCHHHheeecCchhHHHHHHHHHhHHHHHHHHHHHHHHH---HHHh----cCCc---------ccccCHHHHHHHhhhh
Confidence 44444455555552 23589999999966543322 2322 2222 1123556667877666
Q ss_pred ccccccc---------------CCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHcCcchHHHHHHHcC
Q 015482 175 CERNKAR---------------HVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAAS 239 (406)
Q Consensus 175 ~~~~~~~---------------~~~~nnERLEFLGDaVL~lvvs~~Lf~~yP~~~eG~Ls~~Rs~lVsn~~La~lA~~lG 239 (406)
+...... ....||||||||||+||+++++++||++||+.+||.|+.+|+++|||++|+.+|+++|
T Consensus 307 ~~~~g~~~~~~~~~~AlTh~s~~~~~nnERLEfLGDavL~~~vs~~L~~~~P~~~eG~Ls~lRs~lVsn~~La~~A~~lg 386 (756)
T 2qvw_A 307 RLDQGRGRGLAGWRTPFGPFGVSHTDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLG 386 (756)
T ss_dssp BCSCCBTTBSBTTEEECBGGGBCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred hhhhccccchhhhhhhcccccccCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCchHHHHHHHHcC
Confidence 5321000 0014899999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCcCchhhhhcccCCCChHHhHHHHHHHHHHHh-cCHHHHHHHHHHhhCCCCCC-----------Cc-hHHHHhhc
Q 015482 240 LQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLC-FGFPEVYRVLFEVFGMDPED-----------KE-CQPKLRRQ 306 (406)
Q Consensus 240 L~~~I~~~~~~~~~~~~~~~KiLADvfEALIGAIYlD-~G~~~a~~fl~~~~~~~i~~-----------Kt-Lqe~lq~~ 306 (406)
|++||+.++++. .+++++||+|||+|||||+| +|++.|++|+.+++.+.++. |+ |||++|++
T Consensus 387 L~~~l~~~~~e~-----~~~~ilaD~~EAliGAiylD~~G~~~a~~~v~~~~~~~~~~~~~~~~~~Dp~Kt~LqE~~q~~ 461 (756)
T 2qvw_A 387 LPQLAEFSNNLV-----AKSKTWADMYEEIVGSIFTGPNGIYGCEEFLAKTLMSPEHSKTVGSACPDAVTKASKRVCMGE 461 (756)
T ss_dssp CTTTCBCCSCC-------CCCCHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHBCGGGSCC---CCCHHHHHHHHHHHTSC
T ss_pred hHHHhccCCCCC-----CcccHHHhHHHHHhCcccccccChHHHHHHHHHHHHhhhhcccccccccCchHHHHHHHHhcc
Confidence 999999998764 36899999999999999999 99999999999999876543 67 99999865
No 11
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1
Probab=99.87 E-value=1.3e-22 Score=178.77 Aligned_cols=106 Identities=13% Similarity=0.133 Sum_probs=98.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHcCcchHHHHHHHc----CCC----cccCcCchhhhhcc
Q 015482 184 RAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAA----SLQ----NLIFPFDEMDRLIR 255 (406)
Q Consensus 184 ~~nnERLEFLGDaVL~lvvs~~Lf~~yP~~~eG~Ls~~Rs~lVsn~~La~lA~~l----GL~----~~I~~~~~~~~~~~ 255 (406)
..|.+||||||||||+++|+++||.+ |..++|.||++|+.+||.++++.+++++ +|. ++++.|++....++
T Consensus 9 ~~~~erLefLGDAVlel~vr~~L~~~-~~~~eg~L~k~r~~~V~a~aqa~~~~~l~~~~~L~eeE~~~~r~Grn~~~~~~ 87 (138)
T 1u61_A 9 QLNSLALAYMGDAVYEQYIRYHLLQK-GKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRRGRNANSGTV 87 (138)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHH-CCSCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHHHHTCCCSSCC
T ss_pred hcCHHHHHHhhHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHcCHHHHHHHHHHhhcccCCChHHHHHhhcCCCcccCCC
Confidence 45899999999999999999999999 8889999999999999999999999999 998 79999988766666
Q ss_pred cCCCCh----HHhHHHHHHHHHHHhcCHHHHHHHHHHhh
Q 015482 256 KEREPP----VKSVFWALFGAIYLCFGFPEVYRVLFEVF 290 (406)
Q Consensus 256 ~~~~Ki----LADvfEALIGAIYlD~G~~~a~~fl~~~~ 290 (406)
+.+..+ +||.|||+|||+|+|+|++.++.|+..++
T Consensus 88 ~k~~si~~Yr~A~~fEALiGalYLd~g~er~~~~i~~~~ 126 (138)
T 1u61_A 88 PKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYKAI 126 (138)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCchhhhhhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677889 99999999999999999999999998776
No 12
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp}
Probab=99.82 E-value=1.7e-20 Score=165.09 Aligned_cols=108 Identities=17% Similarity=0.136 Sum_probs=91.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHcCcchHHHHHHHcC--CC----cccCcCchhhhhcccC
Q 015482 184 RAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAAS--LQ----NLIFPFDEMDRLIRKE 257 (406)
Q Consensus 184 ~~nnERLEFLGDaVL~lvvs~~Lf~~yP~~~eG~Ls~~Rs~lVsn~~La~lA~~lG--L~----~~I~~~~~~~~~~~~~ 257 (406)
..|.+|||||||||++++|+++||.+ |. ++|.|++.|+.+||.+.++.++++++ |. .+++.|++.....+..
T Consensus 12 ~~~~~~LefLGDAVleL~vr~~L~~~-~~-~~g~L~k~~~~~V~a~aqa~~~~~l~~~Lte~E~~~~rrGrna~~~~~~k 89 (137)
T 2gsl_A 12 DYSGLELAFLGDAIWELEIRKYYLQF-GY-NIPTLNKYVKAKVNAKYQSLIYKKIINDLDEEFKVIGKRAKNSNIKTFPR 89 (137)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTS-CB-CHHHHHHHHHHHHSHHHHHHHHHHHGGGSCHHHHHHHHHHHC--CCSCCS
T ss_pred hcCHHHHHHhhHHHHHHHHHHHHHHC-CC-CHHHHHHHHHHHhCHHHHHHHHHHHHHHhCHHHHHHHHhcccccCCCCCC
Confidence 46899999999999999999999998 88 99999999999999999999999996 55 5555555443333344
Q ss_pred CCCh----HHhHHHHHHHHHHHhcCHHHHHHHHHHhhCCC
Q 015482 258 REPP----VKSVFWALFGAIYLCFGFPEVYRVLFEVFGMD 293 (406)
Q Consensus 258 ~~Ki----LADvfEALIGAIYlD~G~~~a~~fl~~~~~~~ 293 (406)
+.++ +||.|||+|||+|+|+|++.++.|+...+...
T Consensus 90 ~~si~~Y~~At~fEALiGaLYLd~~~erl~~ll~~~~~~~ 129 (137)
T 2gsl_A 90 SCTVMEYKEATALEAIIGAMYLLKKEEEIKKIINIVIKGE 129 (137)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCChHHHHHhhHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 5664 99999999999999999999999999887443
No 13
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=95.00 E-value=0.024 Score=46.40 Aligned_cols=68 Identities=15% Similarity=0.173 Sum_probs=46.9
Q ss_pred CCc-hHHHHhhcCCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCCccccccccccccc-----hhhHH
Q 015482 296 DKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMHRFRGNLWDFDS-----RPQVM 369 (406)
Q Consensus 296 ~Kt-Lqe~lq~~~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g~~~~~~~~~~~~~-----~~~~~ 369 (406)
.|+ ||||+|++ ..|.|++++++|+ +|.+.|.+.|..+...+.|..-..+. =-..+
T Consensus 18 ~Kt~LqE~~Q~~-~~p~Y~~~~~~Gp------------------~H~~~F~~~v~v~g~~~~G~G~SKK~Aeq~AA~~aL 78 (97)
T 2dmy_A 18 LMNALMRLNQIR-PGLQYKLLSQSGP------------------VHAPVFTMSVDVDGTTYEASGPSKKTAKLHVAVKVL 78 (97)
T ss_dssp CTHHHHHHHHHS-CSCCCEEEEEESC------------------SSSCEEEEEEEETTEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCceEEEEEeeCC------------------CCCCeEEEEEEECCEEEEEeeCCHHHHHHHHHHHHH
Confidence 388 99999986 7899999999994 89999999886665555444322222 11456
Q ss_pred HHhCCCCcCCCcc
Q 015482 370 QTLGYPLVVQDRI 382 (406)
Q Consensus 370 ~~l~~p~~~~~~~ 382 (406)
+.|++|-.....+
T Consensus 79 ~~L~~~~~~~~~~ 91 (97)
T 2dmy_A 79 QAMGYPTGFDADI 91 (97)
T ss_dssp HHHTCCCSCCSCC
T ss_pred HHhCCCCcccccC
Confidence 6778776544443
No 14
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=94.79 E-value=0.014 Score=45.41 Aligned_cols=38 Identities=18% Similarity=0.085 Sum_probs=32.0
Q ss_pred Cc-hHHHHhhc-CCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCCc
Q 015482 297 KE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGM 352 (406)
Q Consensus 297 Kt-Lqe~lq~~-~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g~ 352 (406)
|+ |||++|+. ...|.|.+++++|+ +|.+.|.+.|..+.
T Consensus 7 Kt~LqE~~q~~~~~~p~Y~~~~~~Gp------------------~h~~~F~~~v~v~g 46 (76)
T 3adj_A 7 KNLLQEYAQKMNYAIPLYQCQKVETL------------------GRVTQFTCTVEIGG 46 (76)
T ss_dssp HHHHHHHHHTTTCCCCEEEEEEEECS------------------SSCEEEEEEEEETT
T ss_pred HHHHHHHHHHhCCCCCeEEEeeccCC------------------CCCCcEEEEEEECC
Confidence 67 99999998 77899999999994 79999988775544
No 15
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=94.63 E-value=0.023 Score=43.75 Aligned_cols=45 Identities=18% Similarity=0.163 Sum_probs=35.8
Q ss_pred CCCCc-hHHHHhhcCCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCCcccccc
Q 015482 294 PEDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMHRFRG 357 (406)
Q Consensus 294 i~~Kt-Lqe~lq~~~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g~~~~~~ 357 (406)
.+.|+ |||++|. ...|.|.+++++|+ +|.+.|.+.|..+...+.|
T Consensus 4 ~d~Ks~Lqe~~q~-~~~p~Y~~~~~~Gp------------------~h~~~F~~~v~v~g~~~~G 49 (73)
T 2b7t_A 4 VLPKNALMQLNEI-KPGLQYMLLSQTGP------------------VHAPLFVMSVEVNGQVFEG 49 (73)
T ss_dssp SSSHHHHHHHHHH-CSCCEEEEEEEECS------------------SSSCEEEEEEESSSSEEEE
T ss_pred CCHHHHHHHHHcC-CCCceEEEEEeeCC------------------CCCCeEEEEEEECCEEEEe
Confidence 45688 9999995 78899999999994 8999999887665554544
No 16
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=94.57 E-value=0.019 Score=45.85 Aligned_cols=42 Identities=17% Similarity=0.107 Sum_probs=33.3
Q ss_pred CCCc-hHHHHhh-----c-CCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCCccc
Q 015482 295 EDKE-CQPKLRR-----Q-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMHR 354 (406)
Q Consensus 295 ~~Kt-Lqe~lq~-----~-~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g~~~ 354 (406)
|.|+ ||||+|+ . ...|.|++++++|+ +|.+.|.+.|..+...
T Consensus 2 d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp------------------~H~~~F~v~V~v~g~~ 50 (85)
T 2khx_A 2 DPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGP------------------SHARTYTVAVYFKGER 50 (85)
T ss_dssp CSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCS------------------SSCCCEEEEEEETTEE
T ss_pred CHHHHHHHHHhhhhhhcCCCCCceEEEEEeECC------------------CCCCcEEEEEEECCEE
Confidence 4578 9999996 3 56899999999994 7999998887665433
No 17
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=94.53 E-value=0.018 Score=44.40 Aligned_cols=41 Identities=22% Similarity=0.106 Sum_probs=32.6
Q ss_pred CCCCc-hHHHHhhc-CCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCCcc
Q 015482 294 PEDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMH 353 (406)
Q Consensus 294 i~~Kt-Lqe~lq~~-~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g~~ 353 (406)
.+.|+ |||++|++ ...|.|.++++ |+ +|.+.|.+.|..+..
T Consensus 3 ~d~Kt~LqE~~q~~~~~~p~Y~~~~~-Gp------------------~h~~~F~~~v~v~g~ 45 (73)
T 3adg_A 3 HVFKSRLQEYAQKYKLPTPVYEIVKE-GP------------------SHKSLFQSTVILDGV 45 (73)
T ss_dssp CSHHHHHHHHHHHTTCCCCEEEEEEE-SS------------------TTSCEEEEEEEETTE
T ss_pred CCHHHHHHHHHHHcCCCCCEEEEEeE-CC------------------CCCCeEEEEEEECCE
Confidence 34578 99999998 77899999985 84 799999888765543
No 18
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=94.49 E-value=0.02 Score=43.59 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=31.3
Q ss_pred Cc-hHHHHhhc-CCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCCc
Q 015482 297 KE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGM 352 (406)
Q Consensus 297 Kt-Lqe~lq~~-~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g~ 352 (406)
++ |||++|++ ...|.|.+++++|+ +|.+.|.+.|..+.
T Consensus 3 ~s~LqE~~q~~~~~~p~Y~~~~~~Gp------------------~h~~~F~~~v~v~~ 42 (69)
T 1di2_A 3 VGSLQELAVQKGWRLPEYTVAQESGP------------------PHKREFTITCRVET 42 (69)
T ss_dssp HHHHHHHHHHHTCCCCEEEEEEEESC------------------GGGCEEEEEEEETT
T ss_pred HHHHHHHHHHcCCCCCEEEEEEeECC------------------CCCCeEEEEEEECC
Confidence 35 99999998 77899999999994 79999988775443
No 19
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=94.28 E-value=0.027 Score=44.76 Aligned_cols=40 Identities=10% Similarity=-0.092 Sum_probs=32.8
Q ss_pred CCCc-hHHHHhhcCCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCCc
Q 015482 295 EDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGM 352 (406)
Q Consensus 295 ~~Kt-Lqe~lq~~~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g~ 352 (406)
+.|+ ||||+|++...|.|++++++|+ +|.+.|.+.|..+.
T Consensus 9 d~Ks~LqE~~q~~~~~p~Y~~~~~~Gp------------------~h~~~F~~~v~v~~ 49 (84)
T 2dix_A 9 TPIQVLHEYGMKTKNIPVYECERSDVQ------------------IHVPTFTFRVTVGD 49 (84)
T ss_dssp CHHHHHHHHHHHTTCCCEEEEEEEECS------------------SSSCEEEEEEEETT
T ss_pred CHHHHHHHHHHHcCCCCeEEEEEeECC------------------CCCCeEEEEEEECC
Confidence 3478 9999998876899999999994 79999988775543
No 20
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=94.22 E-value=0.028 Score=45.30 Aligned_cols=40 Identities=18% Similarity=0.162 Sum_probs=33.2
Q ss_pred CCCc-hHHHHhhc-CCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCCc
Q 015482 295 EDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGM 352 (406)
Q Consensus 295 ~~Kt-Lqe~lq~~-~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g~ 352 (406)
+.|+ ||||+|++ ...|.|++++++|+ +|.+.|.+.|..+.
T Consensus 7 d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp------------------~H~~~F~~~v~v~g 48 (89)
T 1uhz_A 7 GPISRLAQIQQARKEKEPDYILLSERGM------------------PRRREFVMQVKVGN 48 (89)
T ss_dssp CHHHHHHHHHHHTTSCCCEEEEEEEESC------------------STTCEEEEEEEETT
T ss_pred CHHHHHHHHHHHhCCCCCeEEEEEeECC------------------CCCCeEEEEEEECC
Confidence 4477 99999998 77899999999994 79999988875544
No 21
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=93.95 E-value=0.034 Score=44.72 Aligned_cols=41 Identities=12% Similarity=0.100 Sum_probs=33.4
Q ss_pred CCCc-hHHHHhhc-CCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCCcc
Q 015482 295 EDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMH 353 (406)
Q Consensus 295 ~~Kt-Lqe~lq~~-~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g~~ 353 (406)
+.|+ |||++|+. ...|.|++++++|+ +|.+.|.+.|..+..
T Consensus 16 d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp------------------~H~~~F~~~v~v~g~ 58 (88)
T 3adl_A 16 HEVGALQELVVQKGWRLPEYTVTQESGP------------------AHRKEFTMTCRVERF 58 (88)
T ss_dssp CHHHHHHHHHHHTTCCCCEEEEEEEESC------------------TTSCEEEEEEEETTE
T ss_pred CHHHHHHHHHHHcCCCCCEEEEEEeECC------------------CCCCeEEEEEEECCE
Confidence 3478 99999998 77899999999994 798999888755443
No 22
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=93.79 E-value=0.027 Score=47.92 Aligned_cols=41 Identities=15% Similarity=-0.044 Sum_probs=33.3
Q ss_pred CCCCc-hHHHHhhcCCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCCcc
Q 015482 294 PEDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMH 353 (406)
Q Consensus 294 i~~Kt-Lqe~lq~~~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g~~ 353 (406)
.|.|| ||||+|+....|.|+++++ |+ +|.+.|.+.|..+..
T Consensus 8 ~D~KT~LQE~~Q~~~~~P~Y~vv~~-GP------------------dH~k~F~v~V~i~g~ 49 (117)
T 1t4o_A 8 MNAKRQLYSLIGYASLRLHYVTVKK-PT------------------AVDPNSIVECRVGDG 49 (117)
T ss_dssp TTHHHHHHHHHCCGGGCCEEEEEEC-CC------------------SSCCCEEEEEECTTC
T ss_pred CCchHHHHHHHcCCCCCCEEEEeee-CC------------------CCCCeEEEEEEECCE
Confidence 45689 9999998767799999986 83 899999998766544
No 23
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=93.79 E-value=0.035 Score=44.70 Aligned_cols=38 Identities=13% Similarity=0.081 Sum_probs=32.0
Q ss_pred Cc-hHHHHhhc-CCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCCc
Q 015482 297 KE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGM 352 (406)
Q Consensus 297 Kt-Lqe~lq~~-~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g~ 352 (406)
|+ ||||+|++ ...|.|++++++|+ +|.+.|.+.|..+.
T Consensus 19 Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp------------------~h~~~F~~~v~i~g 58 (89)
T 2cpn_A 19 VGALQELVVQKGWRLPEYTVTQESGP------------------AHRKEFTMTCRVER 58 (89)
T ss_dssp HHHHHHHHHHHTCCCCEEEEEEEECC------------------SSSCEEEEEEEETT
T ss_pred HHHHHHHHHHcCCCCCeEEEEeeECC------------------CCCCeEEEEEEECC
Confidence 77 99999998 77799999999994 79999988775443
No 24
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=93.79 E-value=0.026 Score=45.47 Aligned_cols=41 Identities=22% Similarity=0.062 Sum_probs=29.5
Q ss_pred CCCc-hHHHHhhcCCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCCcc
Q 015482 295 EDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMH 353 (406)
Q Consensus 295 ~~Kt-Lqe~lq~~~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g~~ 353 (406)
+.|+ ||||+|+....|.|++++++|+ +|.+.|.+.|..+..
T Consensus 15 d~Ks~LqE~~q~~~~~p~Y~~~~~~Gp------------------~H~~~F~~~v~v~g~ 56 (90)
T 3llh_A 15 TPISLLQEYGTRIGKTPVYDLLKAEGQ------------------AHQPNFTFRVTVGDT 56 (90)
T ss_dssp CHHHHHHHHHHHTTCCCEEEEEEEC-----------------------CCEEEEEEETTE
T ss_pred CHHHHHHHHHHhcCCCCEEEEEEeECC------------------CCCCcEEEEEEECCE
Confidence 3377 9999998866899999999994 899999888766544
No 25
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=93.60 E-value=0.027 Score=43.67 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=31.2
Q ss_pred CCCc-hHHHHhhc-CCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCCc
Q 015482 295 EDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGM 352 (406)
Q Consensus 295 ~~Kt-Lqe~lq~~-~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g~ 352 (406)
+.|+ |||++|++ .. |.|.+++++|+ +|.+.|.+.|..+.
T Consensus 8 d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp------------------~h~~~F~~~v~i~~ 48 (76)
T 1ekz_A 8 SPISQVHEIGIKRNMT-VHFKVLREEGP------------------AHMKNFITACIVGS 48 (76)
T ss_dssp CHHHHHHHHHHHTTCC-CEEEESSSCCS------------------SSCSCSSEEEEETT
T ss_pred CHHHHHHHHHHHcCCC-CEEEEEEeECC------------------CCCCcEEEEEEECC
Confidence 3477 99999998 55 99999998994 79899988775443
No 26
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=93.31 E-value=0.03 Score=45.87 Aligned_cols=40 Identities=15% Similarity=-0.025 Sum_probs=31.8
Q ss_pred CCCc-hHHHHhhcCCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCCcc
Q 015482 295 EDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMH 353 (406)
Q Consensus 295 ~~Kt-Lqe~lq~~~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g~~ 353 (406)
|.|| ||||+|+....|.|+++++ |+ +|.+.|.+.|..+..
T Consensus 7 D~KT~LQE~~Q~~~~~p~Y~v~~~-Gp------------------dH~k~F~v~v~i~~~ 47 (94)
T 1t4n_A 7 NAKRQLYSLIGYASLRLHYVTVKK-PT------------------AVDPNSIVECRVGDG 47 (94)
T ss_dssp HHHHHHHHHTCSSSSCCEEEECCC-CS------------------SSCCSEEEEEECSSS
T ss_pred CchHHHHHHHcCCCCCCEEEEeee-CC------------------CCCCeEEEEEEECCE
Confidence 4488 9999998866899999765 73 899999988765543
No 27
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=92.93 E-value=0.069 Score=44.11 Aligned_cols=43 Identities=23% Similarity=0.097 Sum_probs=32.4
Q ss_pred CCCCCc-hHHHHhhc-CCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCCccc
Q 015482 293 DPEDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMHR 354 (406)
Q Consensus 293 ~i~~Kt-Lqe~lq~~-~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g~~~ 354 (406)
..+.|+ |||++|++ ...|.|+++++ |+ +|.+.|.+.|..+...
T Consensus 16 ~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~-Gp------------------~H~~~F~~~V~v~g~~ 60 (103)
T 2l2n_A 16 CYVFKSRLQEYAQKYKLPTPVYEIVKE-GP------------------SHKSLFQSTVILDGVR 60 (103)
T ss_dssp ---CTTHHHHHHHHTTCCCCEEEEEEE-SC------------------SSSCEEEEEEEETTEE
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEeE-cC------------------CCCCeEEEEEEECCEE
Confidence 345588 99999998 77899999985 83 7999998887555433
No 28
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=92.93 E-value=0.045 Score=44.78 Aligned_cols=40 Identities=13% Similarity=0.070 Sum_probs=32.2
Q ss_pred Cc-hHHHHhhcCCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCCccc
Q 015482 297 KE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMHR 354 (406)
Q Consensus 297 Kt-Lqe~lq~~~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g~~~ 354 (406)
|+ ||||+|++...|.|+++.++|+ +|.+.|.+.|..+...
T Consensus 17 Kt~LqE~~Q~~~~~p~Y~~~~~~Gp------------------~H~~~F~v~v~i~g~~ 57 (97)
T 1x49_A 17 MDKLNKYRQMHGVAITYKELSTSGP------------------PHDRRFTFQVLIDEKE 57 (97)
T ss_dssp HHHHHHHHHHHTCCEEEEEEEEESC------------------SSSCEEEEEEEESSCC
T ss_pred HHHHHHHHHHcCCCCeEEEEEeeCC------------------CCCCcEEEEEEECCEE
Confidence 77 9999999844589999999994 7999998887555433
No 29
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=92.60 E-value=0.062 Score=43.59 Aligned_cols=45 Identities=16% Similarity=0.244 Sum_probs=35.8
Q ss_pred CCCc-hHHHHhhcCCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCCccccccc
Q 015482 295 EDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMHRFRGN 358 (406)
Q Consensus 295 ~~Kt-Lqe~lq~~~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g~~~~~~~ 358 (406)
+.|+ ||||+|++. .|.|++++++|+ +|.+.|.+.|..+...+.|.
T Consensus 15 ~~K~~LqEl~Qk~~-~p~Y~~v~~~Gp------------------~H~~~F~v~V~v~g~~~~G~ 60 (91)
T 2l33_A 15 HGKNPVMELNEKRR-GLKYELISETGG------------------SHDKRFVMEVEVDGQKFQGA 60 (91)
T ss_dssp STTCHHHHHHHHCS-SCEEEEEEEEEC------------------SSCEEEEEEEEETTEEEEEE
T ss_pred CCCCHHHHHHHhCC-CCeEEEEEeeCC------------------CCCCeEEEEEEECCEEEEee
Confidence 4478 999999888 999999999994 89999988876655555443
No 30
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=92.36 E-value=0.08 Score=43.46 Aligned_cols=40 Identities=15% Similarity=-0.016 Sum_probs=32.9
Q ss_pred CCCCc-hHHHHhhcCCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCCc
Q 015482 294 PEDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGM 352 (406)
Q Consensus 294 i~~Kt-Lqe~lq~~~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g~ 352 (406)
.+.|+ ||||+|++...|.|++ .++|+ +|.+.|.+.|..+.
T Consensus 6 ~d~Kt~LqE~~Qk~~~~P~Y~~-~~~Gp------------------~H~~~F~~~V~v~g 46 (99)
T 1whq_A 6 SGIKNFLYAWCGKRKMTPAYEI-RAVGN------------------KNRQKFMCEVRVEG 46 (99)
T ss_dssp CSSHHHHHHHHHHTTCCCEEEE-EEEEC------------------SSSEEEEEEEECTT
T ss_pred CCHHHHHHHHHHHCCCCCeEEE-eeecC------------------CCCCeEEEEEEECC
Confidence 45688 9999998877899999 78884 79999988876554
No 31
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=90.12 E-value=0.15 Score=42.80 Aligned_cols=35 Identities=17% Similarity=0.148 Sum_probs=29.5
Q ss_pred Cc-hHHHHhhcCCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCC
Q 015482 297 KE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPP 350 (406)
Q Consensus 297 Kt-Lqe~lq~~~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~ 350 (406)
|+ |||++|++...|.|+ +.+.|+ +|.+.|.+.|..
T Consensus 29 Kt~LqE~~Qk~~~~p~Y~-~~~~Gp------------------~H~~~F~~~V~v 64 (113)
T 1uil_A 29 KARLNQYFQKEKIQGEYK-YTQVGP------------------DHNRSFIAEMTI 64 (113)
T ss_dssp HHHHHHHHHHSCCCCCCE-EEEESC------------------STTCEEEEEEEE
T ss_pred HHHHHHHHHHCCCCCeEE-EeeECC------------------CCCCcEEEEEEE
Confidence 77 999999983399999 788884 899999888766
No 32
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=85.83 E-value=0.39 Score=42.96 Aligned_cols=40 Identities=18% Similarity=0.077 Sum_probs=32.0
Q ss_pred Cc-hHHHHhhcCCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCCccc
Q 015482 297 KE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMHR 354 (406)
Q Consensus 297 Kt-Lqe~lq~~~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g~~~ 354 (406)
|+ ||||+|++...|.|.++.++|+ +|.+.|.+.|..+...
T Consensus 16 ks~LqE~~q~~~~~p~Y~~~~~~Gp------------------~h~~~F~~~v~v~g~~ 56 (179)
T 1qu6_A 16 MEELNTYRQKQGVVLKYQELPNSGP------------------PHDRRFTFQVIIDGRE 56 (179)
T ss_dssp HHHHHHHHHHHTCCCEEEEEESCBT------------------TTBCCEEEEEESSSSC
T ss_pred HHHHHHHHHhCCCCCeEEEeeccCC------------------CCCCeEEEEEEECCEE
Confidence 67 9999999844599999988884 7999998887655443
No 33
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=85.71 E-value=0.19 Score=43.26 Aligned_cols=43 Identities=21% Similarity=0.222 Sum_probs=31.4
Q ss_pred CCCCCCc-hHHHHhhc-CCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCCcccc
Q 015482 292 MDPEDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMHRF 355 (406)
Q Consensus 292 ~~i~~Kt-Lqe~lq~~-~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g~~~~ 355 (406)
...+.|+ ||||+|++ ...|.|+++.+ +|.+.|.+.|..+...+
T Consensus 24 ~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~---------------------~H~~~F~v~V~v~g~~~ 68 (128)
T 1whn_A 24 PQITPKMCLLEWCRREKLPQPVYETVQR---------------------TIDRMFCSVVTVAEQKY 68 (128)
T ss_dssp TTCCHHHHHHHHHHHTTCCCCCCCEEEC---------------------SSSCCEEEEEEETTEEE
T ss_pred cCCCHHHHHHHHHHHcCCCCCeEEEEee---------------------cCCCcEEEEEEECCEEE
Confidence 3345588 99999998 78899998864 36778888775554443
No 34
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=84.87 E-value=0.39 Score=39.12 Aligned_cols=23 Identities=17% Similarity=0.011 Sum_probs=21.0
Q ss_pred Cc-hHHHHhhc-CCCCceEEEeeeC
Q 015482 297 KE-CQPKLRRQ-LEDVDYVSVEFEG 319 (406)
Q Consensus 297 Kt-Lqe~lq~~-~~~p~Y~~i~~~G 319 (406)
|+ |||++|++ ...|.|++++++|
T Consensus 19 Kt~LqE~~Q~~~~~~P~Y~~~~~~G 43 (98)
T 1x47_A 19 VCILHEYMQRVLKVRPVYNFFECEN 43 (98)
T ss_dssp HHHHHHHHHHHTCSCCEEEEEECSS
T ss_pred HHHHHHHHHHcCCCCCeEEEEEeEC
Confidence 77 99999998 7789999999888
No 35
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=84.16 E-value=2.2 Score=35.88 Aligned_cols=89 Identities=11% Similarity=0.057 Sum_probs=65.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHh--hCCCCChhhHHHHHHHHcCcchHHHHHHHcCCCcccCcCchhhhhcccCCCChHH
Q 015482 186 GHSRLCFLGQFVLELAFCEFFLQ--RYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVK 263 (406)
Q Consensus 186 nnERLEFLGDaVL~lvvs~~Lf~--~yP~~~eG~Ls~~Rs~lVsn~~La~lA~~lGL~~~I~~~~~~~~~~~~~~~KiLA 263 (406)
.-.-|.-+||++++++++-.|-+ -+|.-. -|-|.+|+..-...||.+.+.-. + ...-.
T Consensus 11 tdK~LakfGDSLvNfl~SlALse~lG~Ptg~----------rVPnaSLaiale~agL~~~~pR~---D-------Kh~kG 70 (133)
T 1ztd_A 11 IDKGLAKFGDSLINFLYSLALTEFLGKPTGD----------RVPNASLAIALELTGLSKNLRRV---D-------KHAKG 70 (133)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTSCCCC----------CCCHHHHHHHHHHHTGGGGCCGG---G-------TTCHH
T ss_pred hcchHHHHhHHHHHHHHHHHHHHHhCCCCCC----------CCCChHHHHHHHHhhhhhcCCcc---c-------ccCcc
Confidence 44679999999999999888754 345322 36677888777778888877211 1 23458
Q ss_pred hHHHHHHHHHHHhcC--HHHHHHHHHHhhCCCC
Q 015482 264 SVFWALFGAIYLCFG--FPEVYRVLFEVFGMDP 294 (406)
Q Consensus 264 DvfEALIGAIYlD~G--~~~a~~fl~~~~~~~i 294 (406)
|+.||+|+-.|+.+- .+++-.++...+..++
T Consensus 71 d~aEA~iAyAWleG~is~eEaveilk~nl~~dv 103 (133)
T 1ztd_A 71 DYAEALIAKAWLMGLISEREAVEIIKKNLYPEV 103 (133)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHhcCcHhh
Confidence 999999999999985 5678888877776554
No 36
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=84.02 E-value=0.34 Score=40.85 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=31.6
Q ss_pred Cc-hHHHHhhcCCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCCcccccccc
Q 015482 297 KE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMHRFRGNL 359 (406)
Q Consensus 297 Kt-Lqe~lq~~~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g~~~~~~~~ 359 (406)
|+ ||||+|. |.|++++++|+ +|.+.|.+.|..+...+.|..
T Consensus 40 Ks~LQE~~q~----p~Y~~v~~~Gp------------------~H~k~F~v~V~v~g~~~~G~G 81 (114)
T 2ljh_A 40 VAMLNELRHG----LIYKLESQTGP------------------VHAPLFTISVEVDGQKYLGQG 81 (114)
T ss_dssp HHHHHHHCSC----CEEEEEEEECC------------------SSSCEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHccC----CeEEEEEeeCC------------------CCCCeEEEEEEECCEEEEeee
Confidence 77 9999873 99999999994 899999888765555554433
No 37
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=81.14 E-value=0.65 Score=37.03 Aligned_cols=40 Identities=15% Similarity=0.083 Sum_probs=29.6
Q ss_pred CCCc-hHHHHhhcCCCCceEEEeeeCCccccccccccCCCchhhhcCCc-ceeeccCCCccc
Q 015482 295 EDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPR-LFRACVPPGMHR 354 (406)
Q Consensus 295 ~~Kt-Lqe~lq~~~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~r-lf~~~~~~g~~~ 354 (406)
+.|+ ||||+|++...+.|+ .++|+ +|.+ .|.+.|..+...
T Consensus 7 d~Kt~LqE~~Q~~~~~~~Y~--~~~Gp------------------~H~~~~F~~~v~v~g~~ 48 (88)
T 1x48_A 7 GYIGLVNSFAQKKKLSVNYE--QCEPN------------------SELPQRFICKCKIGQTM 48 (88)
T ss_dssp CHHHHHHHHHHHTTCCEEEE--ECCCS------------------SSSSCCEEEEEEESSCE
T ss_pred CHHHHHHHHHHHcCCCCeeE--EeeCC------------------CCCCceEEEEEEECCEE
Confidence 4578 999999984455898 66773 7988 698887655443
No 38
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=80.31 E-value=1.3 Score=34.01 Aligned_cols=42 Identities=17% Similarity=0.280 Sum_probs=32.7
Q ss_pred Cc-hHHHHhhcCCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCCcccccc
Q 015482 297 KE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMHRFRG 357 (406)
Q Consensus 297 Kt-Lqe~lq~~~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g~~~~~~ 357 (406)
|+ +++|.|.. ..|.|.+++++|+ +|.+.|.+.|..+...+.|
T Consensus 7 K~pl~~L~q~~-~~p~Y~~~~~~Gp------------------~H~~~F~~~v~v~g~~~~G 49 (75)
T 3p1x_A 7 KNPVMELNEKR-RGLKYELISETGG------------------SHDKRFVMEVEVDGQKFQG 49 (75)
T ss_dssp CCHHHHHHHHS-TTCCEEEEEEESC------------------TTSCEEEEEEEETTEEEEE
T ss_pred CCHHHHHHHcC-CCCEEEEEEeeCC------------------CCCceEEEEEEECCEEEEE
Confidence 66 88887764 6899999999994 8999999888666555544
No 39
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=68.39 E-value=3.9 Score=30.74 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=28.6
Q ss_pred hHHHHhhcCCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCCcccccc
Q 015482 299 CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMHRFRG 357 (406)
Q Consensus 299 Lqe~lq~~~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g~~~~~~ 357 (406)
|||+ ...|.|++++++|+ +|.+.|.+.|..+...+.|
T Consensus 10 L~E~----~~~p~Y~~~~~~Gp------------------~h~~~F~~~v~v~~~~~~G 46 (71)
T 2b7v_A 10 LNEL----RPGLKYDFLSESGE------------------SHAKSFVMSVVVDGQFFEG 46 (71)
T ss_dssp HHHH----CCSCEEEEEECCCC------------------TTTCCEEEEEECSSCEEEE
T ss_pred HHHh----CCCCEEEEEEeECC------------------CCCceEEEEEEECCEEEEE
Confidence 7787 47899999998994 8999999887665555544
No 40
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=54.69 E-value=5.6 Score=37.03 Aligned_cols=23 Identities=17% Similarity=0.011 Sum_probs=20.8
Q ss_pred Cc-hHHHHhhc-CCCCceEEEeeeC
Q 015482 297 KE-CQPKLRRQ-LEDVDYVSVEFEG 319 (406)
Q Consensus 297 Kt-Lqe~lq~~-~~~p~Y~~i~~~G 319 (406)
|+ ||||+|++ ...|.|++++++|
T Consensus 25 ks~LqE~~q~~~~~~p~Y~~~~~~G 49 (232)
T 2yt4_A 25 VCILHEYMQRVLKVRPVYNFFECEN 49 (232)
T ss_dssp HHHHHHHHHHTTCCCCEEEEEECSC
T ss_pred HHHHHHHHHHcCCCCCeEEEEeeEC
Confidence 67 99999998 7789999999888
No 41
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=45.39 E-value=8.1 Score=35.93 Aligned_cols=43 Identities=14% Similarity=0.104 Sum_probs=32.4
Q ss_pred CCCc-hHHHHhhcCCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCCcccccccc
Q 015482 295 EDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMHRFRGNL 359 (406)
Q Consensus 295 ~~Kt-Lqe~lq~~~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g~~~~~~~~ 359 (406)
+.|+ |||| ...|.|.++.++|+ +|.+.|.+.|..+...+.|..
T Consensus 162 d~ks~LqE~----~~~p~Y~~~~~~Gp------------------~h~~~F~~~v~v~~~~~~G~G 205 (236)
T 2l3j_A 162 NPVMILNEL----RPGLKYDFLSESGE------------------SHAKSFVMSVVVDGQFFEGSG 205 (236)
T ss_dssp CHHHHHHHH----CCCEEEEEECCSSS------------------SSSCCEEEEEEETTEEEEEEE
T ss_pred CHHHHHHhc----CCCCcEEEEEeeCC------------------CCCCeEEEEEEECCEEEEeee
Confidence 3377 9998 56899999999994 799999888866655555433
No 42
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=41.65 E-value=15 Score=34.14 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=33.3
Q ss_pred CCCCc-hHHHHhhcCCCCceEEEeeeCCccccccccccCCCchhhhcCCcceeeccCCCccccccc
Q 015482 294 PEDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMHRFRGN 358 (406)
Q Consensus 294 i~~Kt-Lqe~lq~~~~~p~Y~~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~~g~~~~~~~ 358 (406)
++.|+ |+++.+. ...|.|++++++|+ +|.+.|.+.|..+...+.|.
T Consensus 4 ~~~K~~l~~l~e~-~~~p~Y~~~~~~Gp------------------~H~~~F~~~v~v~g~~~~G~ 50 (236)
T 2l3j_A 4 VLPKNALMQLNEI-KPGLQYMLLSQTGP------------------VHAPLFVMSVEVNGQVFEGS 50 (236)
T ss_dssp CCTHHHHHHHHHH-CSSCEEEEEEEESC------------------TTSCEEEEEEEETTEEEEEE
T ss_pred CCCcCHHHHHhhc-CCCceEEEEeccCC------------------CCCCeEEEEEEECCEEEEEe
Confidence 45577 8887643 57799999999994 79999988875554445444
No 43
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=34.40 E-value=12 Score=34.67 Aligned_cols=37 Identities=8% Similarity=-0.089 Sum_probs=24.4
Q ss_pred CCCCc-hHHHHhhc-CCCCceE--EEeeeCCccccccccccCCCchhhhcCCcceeeccC
Q 015482 294 PEDKE-CQPKLRRQ-LEDVDYV--SVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVP 349 (406)
Q Consensus 294 i~~Kt-Lqe~lq~~-~~~p~Y~--~i~~~G~~~s~~d~~~~~~p~~~Lf~h~rlf~~~~~ 349 (406)
.+.|+ ||| ++++ ...|.|. ++.+.|+ +|.+.|.+.|.
T Consensus 130 ~d~kt~LqE-~~~~~~~~p~Y~~~~~~~~Gp------------------~h~~~F~~~v~ 170 (232)
T 2yt4_A 130 LSPYQILHE-CLKRNHGMGDTSIKFEVVPGK------------------NQKSEYVMACG 170 (232)
T ss_dssp CCHHHHHHH-HHHTSSSCCCEEEECC------------------------CCEEEEEEET
T ss_pred CChhHHHHH-HHHcCCCCCceEEEEeecCCC------------------CCCCEEEEEEE
Confidence 34577 999 7766 7789998 7777783 78889987775
No 44
>1v18_B APC protein, adenomatous polyposis coli; signaling protein, signalling complex, WNT signal, beta-catenin degradation complex, cell adhesion; HET: SEP; 2.1A {Homo sapiens}
Probab=27.87 E-value=22 Score=24.90 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=14.8
Q ss_pred CCCCccccccccCCCccccchh
Q 015482 10 LVSDNISFSSAISPFPLQSSLK 31 (406)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~ 31 (406)
+.+.+||+.||.|-+|++-++.
T Consensus 14 ~~~~~FScaSSLSAL~l~E~yi 35 (47)
T 1v18_B 14 STPDGFSCSSSLSALSLDEPFI 35 (47)
T ss_dssp SCCCCCC----CCCCCCSSCCC
T ss_pred cCCCCccchhccccccccchhh
Confidence 3678999999999999987765
Done!