BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015483
         (406 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6C074|COQ4_YARLI Ubiquinone biosynthesis protein COQ4, mitochondrial OS=Yarrowia
           lipolytica (strain CLIB 122 / E 150) GN=COQ4 PE=3 SV=1
          Length = 262

 Score = 34.7 bits (78), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 259 PQIALLLALQKLKVTEEQRKCAIDEYEPLVAFALSCGMYSSPAISIYTAKNVREELQEAQ 318
           P   L + L  LK   +QRK   D Y P   +AL  G  S P I++Y  + + ++ +E +
Sbjct: 184 PMSGLGMVLTPLKFKPKQRKRYFDVYLP---WALYNGFRSKPVINVYWEEVLEKDAEELR 240

Query: 319 RDF 321
           RD 
Sbjct: 241 RDL 243


>sp|Q9PK91|SYV_CHLMU Valine--tRNA ligase OS=Chlamydia muridarum (strain MoPn / Nigg)
           GN=valS PE=3 SV=1
          Length = 939

 Score = 33.5 bits (75), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 279 CAIDEYEPLVAFALSCGMYSSPAIS---IYTAKNVREELQEAQRDFIRASVGFSSKGKLL 335
           C I  Y   +  +   G+  S AI+   +YT +N+R E+Q   RD ++A +  S K +LL
Sbjct: 770 CMIAGYPQPIELSFPQGLRESFAIAEKLVYTIRNIRGEMQLDPRDLLQAFIISSEKKELL 829


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.132    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,563,945
Number of Sequences: 539616
Number of extensions: 5539512
Number of successful extensions: 12383
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 12381
Number of HSP's gapped (non-prelim): 5
length of query: 406
length of database: 191,569,459
effective HSP length: 120
effective length of query: 286
effective length of database: 126,815,539
effective search space: 36269244154
effective search space used: 36269244154
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)