Query 015483
Match_columns 406
No_of_seqs 252 out of 518
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 13:24:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015483.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015483hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vea_B MATP, macrodomain TER p 18.0 87 0.003 27.2 3.3 30 350-379 51-80 (151)
2 3lax_A Phenylacetate-coenzyme 13.2 1.3E+02 0.0045 23.3 3.1 20 233-252 7-26 (109)
3 2eo2_A Adult MALE hypothalamus 11.7 1.1E+02 0.0037 23.6 1.9 29 169-199 30-58 (71)
4 3gxs_A Phenylacetate-coenzyme 10.3 1.8E+02 0.0063 22.7 3.0 22 231-252 5-26 (109)
5 3moe_A Phosphoenolpyruvate car 9.5 49 0.0017 35.2 -1.0 29 335-363 509-548 (624)
6 3m20_A 4-oxalocrotonate tautom 7.7 4.1E+02 0.014 18.5 3.8 51 187-241 6-57 (62)
7 2xse_A Thymine dioxygenase JBP 7.4 2E+02 0.0069 25.1 2.2 51 189-240 90-142 (170)
8 4a57_A Nucleoside-triphosphata 6.9 1.9E+02 0.0064 30.7 2.1 28 312-339 492-520 (611)
9 2lic_A Vitellogenin; lipid tra 6.9 2.7E+02 0.0091 18.0 2.0 9 108-116 24-32 (35)
10 3nyq_A Malonyl-COA ligase; A/B 6.6 2.8E+02 0.0097 27.4 3.2 22 231-252 407-428 (505)
No 1
>3vea_B MATP, macrodomain TER protein; macrodomains, chromosome, DNA condensation; 2.55A {Yersinia pestis} PDB: 3veb_B 4d8j_B
Probab=18.04 E-value=87 Score=27.25 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=25.2
Q ss_pred ChhHHHHHHhcCCHHHHHHHHHHHHhhhhc
Q 015483 350 DANLAVWISHYLPPLQAAFVEQCISQRRQS 379 (406)
Q Consensus 350 ~~~Ll~wI~~~Lp~~~~~~i~~~l~~~~~~ 379 (406)
+..+++||..++.+++...+.+.+++++.|
T Consensus 51 P~~v~~WI~~hm~~~l~nklkQaIRArRKR 80 (151)
T 3vea_B 51 PVKVQEWIDAHMNVNLATRMKQTIRARRKR 80 (151)
T ss_dssp HHHHHHHHHHHBCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCHHHHHHHHHHHHHHHHc
Confidence 367999999999999999988888776543
No 2
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=13.20 E-value=1.3e+02 Score=23.32 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=18.1
Q ss_pred EEECCEEeeHHHHHHhhccC
Q 015483 233 YTVGGHSYNAAAIEYMILKM 252 (406)
Q Consensus 233 Y~VGG~~~SL~dIEh~ILR~ 252 (406)
+.|+|..+...+||..++..
T Consensus 7 Iiv~G~nv~P~eIE~vl~~~ 26 (109)
T 3lax_A 7 IILKGVNIFPIQIETILLQF 26 (109)
T ss_dssp EEETTEEECHHHHHHHHHTC
T ss_pred EEECCEEECHHHHHHHHHhC
Confidence 68999999999999988775
No 3
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=11.69 E-value=1.1e+02 Score=23.61 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCcchhHHH
Q 015483 169 ASGALKTFRTLVEQLAKVNPVHLSSNEKLAF 199 (406)
Q Consensus 169 a~~~l~~f~~lv~~L~~Vdl~~Ls~~EKLAF 199 (406)
+.-++++++.| ...+.||+.|+.+|.-.|
T Consensus 30 s~iql~RL~kL--GI~ktdP~~LT~eEi~~F 58 (71)
T 2eo2_A 30 SEIQLSRLKKL--GIHKTDPSTLTEEEVRKF 58 (71)
T ss_dssp CHHHHHHHHHH--TCCCCSTTTCCHHHHHHH
T ss_pred CHHHHHHHHHc--CCCCCCcccCCHHHHhhc
Confidence 44566777666 567889999999998766
No 4
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=10.31 E-value=1.8e+02 Score=22.68 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=19.8
Q ss_pred eeEEECCEEeeHHHHHHhhccC
Q 015483 231 AAYTVGGHSYNAAAIEYMILKM 252 (406)
Q Consensus 231 a~Y~VGG~~~SL~dIEh~ILR~ 252 (406)
-.+.|+|..+...+||..+...
T Consensus 5 D~Iiv~G~nv~P~eIE~~l~~~ 26 (109)
T 3gxs_A 5 DMIILKGVNIFPIQIETILLQF 26 (109)
T ss_dssp SCEEETTEEECHHHHHHHHHTC
T ss_pred CEEEECCEEECHHHHHHHHHhC
Confidence 4578999999999999999986
No 5
>3moe_A Phosphoenolpyruvate carboxykinase, cytosolic [GTP; gluconeogenesis, lyase; HET: GTP SPV 1PE; 1.25A {Rattus norvegicus} PDB: 3mof_A* 3moh_A* 3dtb_A* 2qey_A* 2qf1_A* 2qew_A* 2rk7_A 2rk8_A 2rka_A* 2rkd_A 2rke_A 2qf2_A* 3dt2_A* 3dt7_A* 3dt4_A* 1khb_A* 1khe_A* 1khf_A* 1khg_A 1m51_A* ...
Probab=9.45 E-value=49 Score=35.21 Aligned_cols=29 Identities=21% Similarity=0.476 Sum_probs=21.5
Q ss_pred EechhhH--hhhccc---------CCChhHHHHHHhcCCH
Q 015483 335 LVPKMLH--CFCKGS---------VDDANLAVWISHYLPP 363 (406)
Q Consensus 335 ~LpKi~~--wY~~DF---------~~~~~Ll~wI~~~Lp~ 363 (406)
.+||||. ||++|- |.+..+|+||.+.+..
T Consensus 509 k~PkIF~VNwFrkd~~GkFLWPGfgeN~RVL~Wi~~R~~G 548 (624)
T 3moe_A 509 KLPKIFHVNWFRKDKNGKFLWPGFGENSRVLEWMFGRIEG 548 (624)
T ss_dssp BCCEEEEECSCCBCTTSCBSSCCGGGGHHHHHHHHHHHTT
T ss_pred CCCcEEEEeeeEECCCCCCcCCCCcchhHHHHHHHHHhcC
Confidence 6799987 999973 2235799999876653
No 6
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=7.70 E-value=4.1e+02 Score=18.48 Aligned_cols=51 Identities=22% Similarity=0.230 Sum_probs=32.1
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHhCCCCCchh-hhccccceeEEECCEEee
Q 015483 187 NPVHLSSNEKLAFWINLYNALIMHAYLAYGVPRNDLK-LFSLMQKAAYTVGGHSYN 241 (406)
Q Consensus 187 dl~~Ls~~EKLAFWINiYNalvmHa~L~~G~P~s~~k-~~~~~~ka~Y~VGG~~~S 241 (406)
++...+.++|.++-=-+..++.-+ .|+|..... .+.-..+..|-+||..++
T Consensus 6 ~~~grt~eqK~~L~~~it~~~~~~----lg~~~~~v~V~i~E~~~~~w~~gG~~~~ 57 (62)
T 3m20_A 6 YGPKLDVGKKREFVERLTSVAAEI----YGMDRSAITILIHEPPAENVGVGGKLIA 57 (62)
T ss_dssp ECSCCCHHHHHHHHHHHHHHHHHH----HTCCTTSCEEEEECCCGGGEEETTEETT
T ss_pred EECCCCHHHHHHHHHHHHHHHHHH----hCcCcceEEEEEEEeCHHHeEECCEEhh
Confidence 334568888988876666665532 477765443 223345567889998763
No 7
>2xse_A Thymine dioxygenase JBP1; oxidoreductase, DNA-binding; HET: MSE; 1.90A {Leishmania tarentolae}
Probab=7.40 E-value=2e+02 Score=25.09 Aligned_cols=51 Identities=25% Similarity=0.488 Sum_probs=24.2
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHH-hCCCCCchhhhcc-ccceeEEECCEEe
Q 015483 189 VHLSSNEKLAFWINLYNALIMHAYLA-YGVPRNDLKLFSL-MQKAAYTVGGHSY 240 (406)
Q Consensus 189 ~~Ls~~EKLAFWINiYNalvmHa~L~-~G~P~s~~k~~~~-~~ka~Y~VGG~~~ 240 (406)
..-+..|-.+||| +|-+=+=.|+.+ .|.|+..+....+ .+-.-|+.||..|
T Consensus 90 e~~~~~Ee~~FW~-~~AaHL~~AC~~e~~Mp~~am~m~KLNVKLKDf~FGGTRY 142 (170)
T 2xse_A 90 EVALPKEEQAFWI-MYAVHLSAACAEELHMPEVAMSLRKLNVKLKDFNFGGTRY 142 (170)
T ss_dssp SSCCHHHHHHHHH-HHHHHHHHHHHHTSCCCTTTTCHHHHHHHHHHHHC-----
T ss_pred cCCChhhhHHHHH-HHHHHHHHHHHHHhCCcHhhhHHHHhcccceecccCCchh
Confidence 4446788899998 344433334443 5888864321100 0112266788876
No 8
>4a57_A Nucleoside-triphosphatase 1; hydrolase; 2.00A {Toxoplasma gondii} PDB: 4a59_A* 4a5a_A* 4a5b_A 3agr_A
Probab=6.93 E-value=1.9e+02 Score=30.74 Aligned_cols=28 Identities=36% Similarity=0.578 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhccccccCC-eEEechh
Q 015483 312 EELQEAQRDFIRASVGFSSKG-KLLVPKM 339 (406)
Q Consensus 312 ~qLe~A~~eFL~a~v~V~~~~-kv~LpKi 339 (406)
+||++|+++|+..+|.+..++ .|.||--
T Consensus 492 ~~l~~aa~~fc~~p~~~~~~g~~~~~~~~ 520 (611)
T 4a57_A 492 EELAEAAREFCSSEVIIRTDGPVIQLPNA 520 (611)
T ss_dssp HHHHHHHHHHHTCEEEEETTEEEEECSTT
T ss_pred HHHHHHHHHhhcCcceecCCceeEEcccc
Confidence 399999999999999555455 6777755
No 9
>2lic_A Vitellogenin; lipid transport; HET: SEP; NMR {Apis mellifera}
Probab=6.91 E-value=2.7e+02 Score=18.03 Aligned_cols=9 Identities=22% Similarity=0.220 Sum_probs=4.8
Q ss_pred CCCCCCCCc
Q 015483 108 SDCSMIQSP 116 (406)
Q Consensus 108 ~~~~~~~sp 116 (406)
+...+.|.|
T Consensus 24 seendfwqp 32 (35)
T 2lic_A 24 SEENDFWQP 32 (35)
T ss_dssp TCSCSSCCC
T ss_pred cccccccCC
Confidence 344555655
No 10
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=6.58 E-value=2.8e+02 Score=27.39 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.9
Q ss_pred eeEEECCEEeeHHHHHHhhccC
Q 015483 231 AAYTVGGHSYNAAAIEYMILKM 252 (406)
Q Consensus 231 a~Y~VGG~~~SL~dIEh~ILR~ 252 (406)
..++++|+.+++.+||+.+.+.
T Consensus 407 ~~ik~~G~~v~~~eIE~~l~~~ 428 (505)
T 3nyq_A 407 DLIKSGGYKIGAGEIENALLEH 428 (505)
T ss_dssp CCEEETTEEECHHHHHHHHTTS
T ss_pred ceEEeCCEEECHHHHHHHHHHC
Confidence 4588999999999999999886
Done!