BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015484
(406 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 438 bits (1127), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/398 (55%), Positives = 283/398 (71%), Gaps = 21/398 (5%)
Query: 13 VEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSE 72
+ EE+ +WKKNTPFLYDL+++H LEWPSLT W+P +P D F++H+ VLGTHTS
Sbjct: 17 INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD--FSIHRLVLGTHTS- 73
Query: 73 DFPNFLMIADAVLPTKDSE----------SNVGGKNENPVIPKVEIAQKIRVDGEVNRAR 122
D N L+IA LP D++ GG V K+EI KI +GEVNRAR
Sbjct: 74 DEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGS--VSGKIEIEIKINHEGEVNRAR 131
Query: 123 CMPQKPNLVGTKTSSCEVYVFDCAKQAEKQ--QDDCDPDLRLKGHDKEGYGLSWSPFKEG 180
MPQ P ++ TKT S +V VFD K K +C+PDLRL+GH KEGYGLSW+P G
Sbjct: 132 YMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSG 191
Query: 181 YLVSGSHDNKICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQ 239
+L+S S D+ ICLWD+SA+ ++ KV+DA ++ H +VVEDVSWHL +E+LFGS DD +
Sbjct: 192 HLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQK 251
Query: 240 LMIWDLRTNQTQQ---RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLH 296
LMIWD R+N T + V AH EVN LSFNPY+E++LAT S+D TVAL+D+R + + LH
Sbjct: 252 LMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 311
Query: 297 ILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG 356
SH +E+FQV+W P++ET+LASS DRRL VWDL++IG+EQ DAEDGPPELLF HG
Sbjct: 312 SFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHG 371
Query: 357 GHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394
GH AKISDFSWN N+PWVI SV++DN +QVWQM ++IY
Sbjct: 372 GHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIY 409
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 434 bits (1115), Expect = e-122, Method: Compositional matrix adjust.
Identities = 219/410 (53%), Positives = 292/410 (71%), Gaps = 21/410 (5%)
Query: 2 AAEEQDASLDQ--VEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTF 59
AAE D ++++ + EE+ +WKKNTPFLYDL+++H LEWPSLT W+P + D +
Sbjct: 10 AAESFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKD--Y 67
Query: 60 AVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNEN---------PVIPKVEIAQ 110
+VH+ +LGTHTS D N L+IA LP++D++ + G +N V K+EI
Sbjct: 68 SVHRLILGTHTS-DEQNHLLIASVQLPSEDAQFD-GSHYDNEKGEFGGFGSVCGKIEIEI 125
Query: 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ--DDCDPDLRLKGHDKE 168
KI +GEVNRAR MPQ ++ TKT S +V VFD K K + +C PDLRL+GH KE
Sbjct: 126 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKE 185
Query: 169 GYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKN 227
GYGLSW+P GYL+S S D+ ICLWD++A ++ +VIDA +++ H +VVEDV+WHL +
Sbjct: 186 GYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH 245
Query: 228 ENLFGSAGDDCQLMIWDLRTNQTQQ---RVKAHEKEVNYLSFNPYNEWVLATASSDTTVA 284
E+LFGS DD +LMIWD R N T + V AH EVN LSFNPY+E++LAT S+D TVA
Sbjct: 246 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 305
Query: 285 LFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA 344
L+D+R + + LH SH +E+FQV+W P++ET+LASS DRRL VWDL++IG+EQ DA
Sbjct: 306 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 365
Query: 345 EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394
EDGPPELLF HGGH AKISDFSWN N+PW+I SV++DN +QVWQM +++Y
Sbjct: 366 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVY 415
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 433 bits (1114), Expect = e-122, Method: Compositional matrix adjust.
Identities = 219/410 (53%), Positives = 292/410 (71%), Gaps = 21/410 (5%)
Query: 2 AAEEQDASLDQ--VEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTF 59
AAE D ++++ + EE+ +WKKNTPFLYDL+++H LEWPSLT W+P + D +
Sbjct: 8 AAESFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKD--Y 65
Query: 60 AVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNEN---------PVIPKVEIAQ 110
+VH+ +LGTHTS D N L+IA LP++D++ + G +N V K+EI
Sbjct: 66 SVHRLILGTHTS-DEQNHLLIASVQLPSEDAQFD-GSHYDNEKGEFGGFGSVCGKIEIEI 123
Query: 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ--DDCDPDLRLKGHDKE 168
KI +GEVNRAR MPQ ++ TKT S +V VFD K K + +C PDLRL+GH KE
Sbjct: 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKE 183
Query: 169 GYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKN 227
GYGLSW+P GYL+S S D+ ICLWD++A ++ +VIDA +++ H +VVEDV+WHL +
Sbjct: 184 GYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH 243
Query: 228 ENLFGSAGDDCQLMIWDLRTNQTQQ---RVKAHEKEVNYLSFNPYNEWVLATASSDTTVA 284
E+LFGS DD +LMIWD R N T + V AH EVN LSFNPY+E++LAT S+D TVA
Sbjct: 244 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 303
Query: 285 LFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA 344
L+D+R + + LH SH +E+FQV+W P++ET+LASS DRRL VWDL++IG+EQ DA
Sbjct: 304 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 363
Query: 345 EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394
EDGPPELLF HGGH AKISDFSWN N+PW+I SV++DN +QVWQM +++Y
Sbjct: 364 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVY 413
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 432 bits (1112), Expect = e-121, Method: Compositional matrix adjust.
Identities = 219/410 (53%), Positives = 292/410 (71%), Gaps = 21/410 (5%)
Query: 2 AAEEQDASLDQ--VEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTF 59
AAE D ++++ + EE+ +WKKNTPFLYDL+++H LEWPSLT W+P + D +
Sbjct: 12 AAESFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKD--Y 69
Query: 60 AVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNEN---------PVIPKVEIAQ 110
+VH+ +LGTHTS D N L+IA LP++D++ + G +N V K+EI
Sbjct: 70 SVHRLILGTHTS-DEQNHLLIASVQLPSEDAQFD-GSHYDNEKGEFGGFGSVCGKIEIEI 127
Query: 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ--DDCDPDLRLKGHDKE 168
KI +GEVNRAR MPQ ++ TKT S +V VFD K K + +C PDLRL+GH KE
Sbjct: 128 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKE 187
Query: 169 GYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKN 227
GYGLSW+P GYL+S S D+ ICLWD++A ++ +VIDA +++ H +VVEDV+WHL +
Sbjct: 188 GYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH 247
Query: 228 ENLFGSAGDDCQLMIWDLRTNQTQQ---RVKAHEKEVNYLSFNPYNEWVLATASSDTTVA 284
E+LFGS DD +LMIWD R N T + V AH EVN LSFNPY+E++LAT S+D TVA
Sbjct: 248 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 307
Query: 285 LFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA 344
L+D+R + + LH SH +E+FQV+W P++ET+LASS DRRL VWDL++IG+EQ DA
Sbjct: 308 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 367
Query: 345 EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394
EDGPPELLF HGGH AKISDFSWN N+PW+I SV++DN +QVWQM +++Y
Sbjct: 368 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVY 417
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 424 bits (1090), Expect = e-119, Method: Compositional matrix adjust.
Identities = 212/398 (53%), Positives = 280/398 (70%), Gaps = 21/398 (5%)
Query: 13 VEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSE 72
+ EE+ +WKKNTPFLYDL+++H L+WPSLTV W+P +P D +A+H VLGTHTS
Sbjct: 19 INEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKD--YALHWLVLGTHTS- 75
Query: 73 DFPNFLMIADAVLPTKDSE----------SNVGGKNENPVIPKVEIAQKIRVDGEVNRAR 122
D N L++A +P D++ GG V K+E KI +GEVNRAR
Sbjct: 76 DEQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGS--VTGKIECEIKINHEGEVNRAR 133
Query: 123 CMPQKPNLVGTKTSSCEVYVFDCAKQAEKQ--QDDCDPDLRLKGHDKEGYGLSWSPFKEG 180
MPQ P+++ TKT S +V VFD K K +C+PDLRL+GH KEGYGLSW+ G
Sbjct: 134 YMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSG 193
Query: 181 YLVSGSHDNKICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQ 239
+L+S S D+ +CLWD++A ++ K++DA ++ H +VVEDV+WHL +E+LFGS DD +
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 240 LMIWDLRTNQTQQ---RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLH 296
LMIWD R+N T + V AH EVN LSFNPY+E++LAT S+D TVAL+D+R + + LH
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 297 ILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG 356
SH +E+FQV W P++ET+LASS DRRL VWDL++IG+EQ DAEDGPPELLF HG
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHG 373
Query: 357 GHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394
GH AKISDFSWN N+PWVI SV++DN +Q+WQM ++IY
Sbjct: 374 GHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIY 411
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 414 bits (1065), Expect = e-116, Method: Compositional matrix adjust.
Identities = 209/398 (52%), Positives = 275/398 (69%), Gaps = 21/398 (5%)
Query: 13 VEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSE 72
+ EE+ +WKKNTPFLYDL+ +H L+WPSLTV W+P +P D +A+H VLGTHTS
Sbjct: 19 INEEYKIWKKNTPFLYDLVXTHALQWPSLTVQWLPEVTKPEGKD--YALHWLVLGTHTS- 75
Query: 73 DFPNFLMIADAVLPTKDSE----------SNVGGKNENPVIPKVEIAQKIRVDGEVNRAR 122
D N L++A +P D++ GG V K+E KI +GEVNRAR
Sbjct: 76 DEQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGS--VTGKIECEIKINHEGEVNRAR 133
Query: 123 CMPQKPNLVGTKTSSCEVYVFDCAKQAEKQ--QDDCDPDLRLKGHDKEGYGLSWSPFKEG 180
PQ P+++ TKT S +V VFD K K +C+PDLRL+GH KEGYGLSW+ G
Sbjct: 134 YXPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSG 193
Query: 181 YLVSGSHDNKICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQ 239
+L+S S D+ +CLWD++A ++ K++DA ++ H +VVEDV+WHL +E+LFGS DD +
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 240 LMIWDLRTNQTQQ---RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLH 296
L IWD R+N T + V AH EVN LSFNPY+E++LAT S+D TVAL+D+R + + LH
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 297 ILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG 356
SH +E+FQV W P++ET+LASS DRRL VWDL++IG+EQ DAEDGPPELLF HG
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHG 373
Query: 357 GHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394
GH AKISDFSWN N+PWVI SV++DN Q+WQ ++IY
Sbjct: 374 GHTAKISDFSWNPNEPWVICSVSEDNIXQIWQXAENIY 411
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 104/228 (45%), Gaps = 14/228 (6%)
Query: 176 PFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVY-------EAHESVVEDVSWHLKNE 228
P + Y++SG D I L+D+ ++ V + H VE V W+ +
Sbjct: 53 PVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT 112
Query: 229 NLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN--EWVLATASSDTTVALF 286
+F S+ D L +WD T QT V E+ V +P + ++A + V L
Sbjct: 113 GMFTSSSFDKTLKVWDTNTLQTAD-VFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLC 171
Query: 287 DMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED 346
D++ + HIL H +E+ V W P ++ +LA+++ D R+ +WD+ R + LD +
Sbjct: 172 DLKSGSCS-HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN 230
Query: 347 GPPELLF--SHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392
G ++ H K++ + +D + +V DN +++W ++
Sbjct: 231 GKKSQAVESANTAHNGKVNGLCFT-SDGLHLLTVGTDNRMRLWNSSNG 277
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV 196
L+GH +E +SWSP + L + S D+++ LWDV
Sbjct: 182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDV 216
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 109/226 (48%), Gaps = 30/226 (13%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L GH +G+++SP + + S S D + LW+ + + H S V V
Sbjct: 53 LTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRNG-------QLLQTLTGHSSSVRGV 104
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT 281
++ + + SA DD + +W+ R Q Q + H V ++F+P + +A+AS D
Sbjct: 105 AFSPDGQTI-ASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDK 161
Query: 282 TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE 341
TV L++ L L+ H+ V+ V + P+ +T+ AS++DD+ + +W+ N
Sbjct: 162 TVKLWNRNGQL--LQTLTGHSSSVWGVAFSPDGQTI-ASASDDKTVKLWNRN-------- 210
Query: 342 LDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
+LL + GH + + +++ D I+S +DD TV++W
Sbjct: 211 -------GQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLW 248
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 109/226 (48%), Gaps = 30/226 (13%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L GH +G+++SP + + S S D + LW+ + + H S V V
Sbjct: 299 LTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRNG-------QHLQTLTGHSSSVWGV 350
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT 281
++ + + SA DD + +W+ R Q Q + H V ++F+P + +A+AS D
Sbjct: 351 AFSPDGQTI-ASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDK 407
Query: 282 TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE 341
TV L++ L L+ H+ V+ V + P+ +T+ AS++DD+ + +W+ N
Sbjct: 408 TVKLWNRNGQL--LQTLTGHSSSVWGVAFSPDDQTI-ASASDDKTVKLWNRN-------- 456
Query: 342 LDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
+LL + GH + + +++ D I+S +DD TV++W
Sbjct: 457 -------GQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLW 494
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 109/226 (48%), Gaps = 30/226 (13%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L GH +G+++SP + + S S D + LW+ + + H S V V
Sbjct: 340 LTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRNG-------QLLQTLTGHSSSVRGV 391
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT 281
++ + + SA DD + +W+ R Q Q + H V ++F+P ++ +A+AS D
Sbjct: 392 AFSPDGQTI-ASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQ-TIASASDDK 448
Query: 282 TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE 341
TV L++ L L+ H+ V V + P+ +T+ AS++DD+ + +W+ N
Sbjct: 449 TVKLWNRNGQL--LQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWNRN-------- 497
Query: 342 LDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
+LL + GH + + +++ D I+S +DD TV++W
Sbjct: 498 -------GQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLW 535
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 109/227 (48%), Gaps = 30/227 (13%)
Query: 161 RLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
RL+ H G+++SP + + S S D + LW+ + + H S V
Sbjct: 11 RLEAHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRNG-------QLLQTLTGHSSSVWG 62
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD 280
V++ + + SA DD + +W+ R Q Q + H V ++F+P + +A+AS D
Sbjct: 63 VAFSPDGQTI-ASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQ-TIASASDD 119
Query: 281 TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL 340
TV L++ L L+ H+ V+ V + P+ +T+ AS++DD+ + +W+ N
Sbjct: 120 KTVKLWNRNGQL--LQTLTGHSSSVWGVAFSPDGQTI-ASASDDKTVKLWNRN------- 169
Query: 341 ELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
+LL + GH + + +++ D I+S +DD TV++W
Sbjct: 170 --------GQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLW 207
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 108/226 (47%), Gaps = 30/226 (13%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L GH G+++SP + + S S D + LW+ + + H S V V
Sbjct: 94 LTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRNG-------QLLQTLTGHSSSVWGV 145
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT 281
++ + + SA DD + +W+ R Q Q + H V ++F+P + +A+AS D
Sbjct: 146 AFSPDGQTI-ASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDK 202
Query: 282 TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE 341
TV L++ L L+ H+ V V + P+ +T+ AS++DD+ + +W+ N
Sbjct: 203 TVKLWNRNGQL--LQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWNRN-------- 251
Query: 342 LDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
+LL + GH + ++ ++ + D I+S +DD TV++W
Sbjct: 252 -------GQLLQTLTGHSSSVNGVAF-RPDGQTIASASDDKTVKLW 289
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 107/226 (47%), Gaps = 30/226 (13%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L GH G+++SP + + S S D + LW+ + + H S V V
Sbjct: 381 LTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRNG-------QLLQTLTGHSSSVWGV 432
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT 281
++ ++ + SA DD + +W+ R Q Q + H V ++F+P + +A+AS D
Sbjct: 433 AFSPDDQTI-ASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDK 489
Query: 282 TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE 341
TV L++ L L+ H+ V V + P+ +T+ AS++DD+ + +W+ N
Sbjct: 490 TVKLWNRNGQL--LQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWNRN-------- 538
Query: 342 LDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
+LL + GH + + +++ D I+S + D TV++W
Sbjct: 539 -------GQLLQTLTGHSSSVWGVAFSP-DGQTIASASSDKTVKLW 576
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 107/226 (47%), Gaps = 30/226 (13%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L GH G+++ P + + S S D + LW+ + + H S V V
Sbjct: 258 LTGHSSSVNGVAFRPDGQ-TIASASDDKTVKLWNRNG-------QLLQTLTGHSSSVWGV 309
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT 281
++ + + SA DD + +W+ R Q Q + H V ++F+P + +A+AS D
Sbjct: 310 AFSPDGQTI-ASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQ-TIASASDDK 366
Query: 282 TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE 341
TV L++ L L+ H+ V V + P+ +T+ AS++DD+ + +W+ N
Sbjct: 367 TVKLWNRNGQL--LQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWNRN-------- 415
Query: 342 LDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
+LL + GH + + +++ +D I+S +DD TV++W
Sbjct: 416 -------GQLLQTLTGHSSSVWGVAFSPDDQ-TIASASDDKTVKLW 453
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 73/137 (53%), Gaps = 20/137 (14%)
Query: 251 QQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEW 310
+ R++AH V ++F+P + +A+AS D TV L++ L L+ H+ V+ V +
Sbjct: 9 RNRLEAHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRNGQL--LQTLTGHSSSVWGVAF 65
Query: 311 DPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKN 370
P+ +T+ AS++DD+ + +W+ N +LL + GH + + +++
Sbjct: 66 SPDGQTI-ASASDDKTVKLWNRN---------------GQLLQTLTGHSSSVRGVAFSP- 108
Query: 371 DPWVISSVADDNTVQVW 387
D I+S +DD TV++W
Sbjct: 109 DGQTIASASDDKTVKLW 125
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 113/232 (48%), Gaps = 15/232 (6%)
Query: 163 KGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVS 222
+GH + ++WSP YL S S D C+W + QD + + E HE+ V+ V+
Sbjct: 58 EGHQRTVRKVAWSPCGN-YLASASFDATTCIWKKN---QDD-FECVTTLEGHENEVKSVA 112
Query: 223 WHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK---AHEKEVNYLSFNPYNEWVLATASS 279
W + NL + D + +W++ + V +H ++V ++ ++P E +LA+AS
Sbjct: 113 W-APSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE-LLASASY 170
Query: 280 DTTVALFDMRKMT-VPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE 338
D TV L+ + V L H V+ + +DP+ + LAS +DDR + +W G+E
Sbjct: 171 DDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQR-LASCSDDRTVRIWRQYLPGNE 229
Query: 339 Q-LELDAEDGPPELLFSHGG-HKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388
Q + D + + + G H I D +W + +++ D+ ++V+Q
Sbjct: 230 QGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTG-ALATACGDDAIRVFQ 280
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 97/251 (38%), Gaps = 70/251 (27%)
Query: 150 EKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMH 209
+K QDD + L+GH+ E ++W+P L + S D + +W+V ++ + +
Sbjct: 89 KKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVD---EEDEYECVS 144
Query: 210 VYEAHESVVEDVSWHLKNENLFGSAGDD--------------CQLM------IWDLRTNQ 249
V +H V+ V WH E L ++ DD C + +W L +
Sbjct: 145 VLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP 204
Query: 250 TQQRVKAHEKEVN---YLSFNPYNE------------------------------WV--- 273
+ QR+ + + + + P NE W
Sbjct: 205 SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT 264
Query: 274 --LATASSDTTVALF------DMRKMTVPL--HILSSHTEEVFQVEWDPNHETVLASSAD 323
LATA D + +F D ++ T L H+ +H+++V V W+P +LAS +D
Sbjct: 265 GALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSD 324
Query: 324 DRRLMVWDLNR 334
D + W R
Sbjct: 325 DGEVAFWKYQR 335
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 107/228 (46%), Gaps = 25/228 (10%)
Query: 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219
L GH K + +SP E +L S S D I +W +K I H+ +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTI------SGHKLGIS 72
Query: 220 DVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS 279
DV+W + NL SA DD L IWD+ + + + +K H V +FNP + ++ + S
Sbjct: 73 DVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSF 130
Query: 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339
D +V ++D+ K + L L +H++ V V ++ + +++SS D +WD G
Sbjct: 131 DESVRIWDV-KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTAS-GQCL 187
Query: 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
L +D PP +S ++ N +++++ DNT+++W
Sbjct: 188 KTLIDDDNPP------------VSFVKFSPNGKYILAATL-DNTLKLW 222
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 16/96 (16%)
Query: 295 LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFS 354
+ L+ HT+ V V++ PN E LASS+ D+ + +W A DG E S
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWG------------AYDGKFEKTIS 65
Query: 355 HGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390
GHK ISD +W+ +D ++ S +DD T+++W ++
Sbjct: 66 --GHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS 98
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAH--ESVVEDVSWHLKNENLFGSAGDDC 238
Y+++ + DN + LWD S + Y H E ++ + S +D
Sbjct: 209 YILAATLDNTLKLWDYSKG------KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS--SDTTVALF 286
+ IW+L+T + Q+++ H V + +P E ++A+A+ +D T+ L+
Sbjct: 263 MVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLW 311
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 351 LLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394
L+F+ GH +S ++ N W+ SS A D +++W D +
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIWGAYDGKF 60
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 164 GHDKEGYGL--SWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
GH E Y + ++S ++VSGS DN + +W++ Q K I + + H VV
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL----QTKEI--VQKLQGHTDVVIST 288
Query: 222 SWHLKNENLFGSAG--DDCQLMIW 243
+ H EN+ SA +D + +W
Sbjct: 289 ACH-PTENIIASAALENDKTIKLW 311
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 106/228 (46%), Gaps = 25/228 (10%)
Query: 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219
L GH K + +SP E +L S S D I +W +K I H+ +
Sbjct: 41 FTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTI------SGHKLGIS 93
Query: 220 DVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS 279
DV+W + NL SA DD L IWD+ + + + +K H V +FNP + ++ + S
Sbjct: 94 DVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSF 151
Query: 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339
D +V ++D++ L L +H++ V V ++ + +++SS D +WD G
Sbjct: 152 DESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTAS-GQCL 208
Query: 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
L +D PP +S ++ N +++++ DNT+++W
Sbjct: 209 KTLIDDDNPP------------VSFVKFSPNGKYILAATL-DNTLKLW 243
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 16/93 (17%)
Query: 298 LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG 357
L+ HT+ V V++ PN E LASS+ D+ + +W A DG E S G
Sbjct: 43 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWG------------AYDGKFEKTIS--G 87
Query: 358 HKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390
HK ISD +W+ +D ++ S +DD T+++W ++
Sbjct: 88 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS 119
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAH--ESVVEDVSWHLKNENLFGSAGDDC 238
Y+++ + DN + LWD S + Y H E ++ + S +D
Sbjct: 230 YILAATLDNTLKLWDYSKG------KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 283
Query: 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS--SDTTVALF 286
+ IW+L+T + Q+++ H V + +P E ++A+A+ +D T+ L+
Sbjct: 284 LVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLW 332
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 164 GHDKEGYGL--SWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
GH E Y + ++S ++VSGS DN + +W++ Q K I + + H VV
Sbjct: 256 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL----QTKEI--VQKLQGHTDVVIST 309
Query: 222 SWHLKNENLFGSAG--DDCQLMIW 243
+ H EN+ SA +D + +W
Sbjct: 310 ACH-PTENIIASAALENDKTIKLW 332
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 106/228 (46%), Gaps = 25/228 (10%)
Query: 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219
L GH K + +SP E +L S S D I +W +K I H+ +
Sbjct: 23 FTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTI------SGHKLGIS 75
Query: 220 DVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS 279
DV+W + NL SA DD L IWD+ + + + +K H V +FNP + ++ + S
Sbjct: 76 DVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSF 133
Query: 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339
D +V ++D++ L L +H++ V V ++ + +++SS D +WD G
Sbjct: 134 DESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTAS-GQCL 190
Query: 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
L +D PP +S ++ N +++++ DNT+++W
Sbjct: 191 KTLIDDDNPP------------VSFVKFSPNGKYILAATL-DNTLKLW 225
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 16/93 (17%)
Query: 298 LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG 357
L+ HT+ V V++ PN E LASS+ D+ + +W A DG E S G
Sbjct: 25 LAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWG------------AYDGKFEKTIS--G 69
Query: 358 HKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390
HK ISD +W+ +D ++ S +DD T+++W ++
Sbjct: 70 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS 101
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAH--ESVVEDVSWHLKNENLFGSAGDDC 238
Y+++ + DN + LWD S + Y H E ++ + S +D
Sbjct: 212 YILAATLDNTLKLWDYSKG------KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265
Query: 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS--SDTTVALF 286
+ IW+L+T + Q+++ H V + +P E ++A+A+ +D T+ L+
Sbjct: 266 LVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLW 314
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 106/228 (46%), Gaps = 25/228 (10%)
Query: 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219
L GH K + +SP E +L S S D I +W +K I H+ +
Sbjct: 39 FTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTI------SGHKLGIS 91
Query: 220 DVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS 279
DV+W + NL SA DD L IWD+ + + + +K H V +FNP + ++ + S
Sbjct: 92 DVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSF 149
Query: 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339
D +V ++D++ L L +H++ V V ++ + +++SS D +WD G
Sbjct: 150 DESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTAS-GQCL 206
Query: 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
L +D PP +S ++ N +++++ DNT+++W
Sbjct: 207 KTLIDDDNPP------------VSFVKFSPNGKYILAATL-DNTLKLW 241
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 16/93 (17%)
Query: 298 LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG 357
L+ HT+ V V++ PN E LASS+ D+ + +W A DG E S G
Sbjct: 41 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWG------------AYDGKFEKTIS--G 85
Query: 358 HKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390
HK ISD +W+ +D ++ S +DD T+++W ++
Sbjct: 86 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS 117
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAH--ESVVEDVSWHLKNENLFGSAGDDC 238
Y+++ + DN + LWD S + Y H E ++ + S +D
Sbjct: 228 YILAATLDNTLKLWDYSKG------KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 281
Query: 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS--SDTTVALF 286
+ IW+L+T + Q+++ H V + +P E ++A+A+ +D T+ L+
Sbjct: 282 LVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLW 330
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 164 GHDKEGYGL--SWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
GH E Y + ++S ++VSGS DN + +W++ Q K I + + H VV
Sbjct: 254 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL----QTKEI--VQKLQGHTDVVIST 307
Query: 222 SWHLKNENLFGSAG--DDCQLMIW 243
+ H EN+ SA +D + +W
Sbjct: 308 ACH-PTENIIASAALENDKTIKLW 330
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 106/228 (46%), Gaps = 25/228 (10%)
Query: 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219
L GH K + +SP E +L S S D I +W +K I H+ +
Sbjct: 23 FTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTI------SGHKLGIS 75
Query: 220 DVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS 279
DV+W + NL SA DD L IWD+ + + + +K H V +FNP + ++ + S
Sbjct: 76 DVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSF 133
Query: 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339
D +V ++D++ L L +H++ V V ++ + +++SS D +WD G
Sbjct: 134 DESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTAS-GQCL 190
Query: 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
L +D PP +S ++ N +++++ DNT+++W
Sbjct: 191 KTLIDDDNPP------------VSFVKFSPNGKYILAATL-DNTLKLW 225
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 16/93 (17%)
Query: 298 LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG 357
L+ HT+ V V++ PN E LASS+ D+ + +W A DG E S G
Sbjct: 25 LAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWG------------AYDGKFEKTIS--G 69
Query: 358 HKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390
HK ISD +W+ +D ++ S +DD T+++W ++
Sbjct: 70 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS 101
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAH--ESVVEDVSWHLKNENLFGSAGDDC 238
Y+++ + DN + LWD S + Y H E ++ + S +D
Sbjct: 212 YILAATLDNTLKLWDYSKG------KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265
Query: 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS--SDTTVALF 286
+ IW+L+T + Q+++ H V + +P E ++A+A+ +D T+ L+
Sbjct: 266 LVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLW 314
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 106/228 (46%), Gaps = 25/228 (10%)
Query: 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219
L GH K + +SP E +L S S D I +W +K I H+ +
Sbjct: 22 FTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTI------SGHKLGIS 74
Query: 220 DVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS 279
DV+W + NL SA DD L IWD+ + + + +K H V +FNP + ++ + S
Sbjct: 75 DVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSF 132
Query: 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339
D +V ++D++ L L +H++ V V ++ + +++SS D +WD G
Sbjct: 133 DESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTAS-GQCL 189
Query: 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
L +D PP +S ++ N +++++ DNT+++W
Sbjct: 190 KTLIDDDNPP------------VSFVKFSPNGKYILAATL-DNTLKLW 224
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 16/93 (17%)
Query: 298 LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG 357
L+ HT+ V V++ PN E LASS+ D+ + +W A DG E S G
Sbjct: 24 LAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWG------------AYDGKFEKTIS--G 68
Query: 358 HKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390
HK ISD +W+ +D ++ S +DD T+++W ++
Sbjct: 69 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS 100
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAH--ESVVEDVSWHLKNENLFGSAGDDC 238
Y+++ + DN + LWD S + Y H E ++ + S +D
Sbjct: 211 YILAATLDNTLKLWDYSKG------KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 264
Query: 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS--SDTTVALF 286
+ IW+L+T + Q+++ H V + +P E ++A+A+ +D T+ L+
Sbjct: 265 LVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLW 313
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 107/231 (46%), Gaps = 25/231 (10%)
Query: 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219
L GH K + +SP E +L S S D I +W +K I H+ +
Sbjct: 16 FTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTI------SGHKLGIS 68
Query: 220 DVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS 279
DV+W + NL SA DD L IWD+ + + + +K H V +FNP + ++ + S
Sbjct: 69 DVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSF 126
Query: 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339
D +V ++D++ L L +H++ V V ++ + +++SS D +WD G
Sbjct: 127 DESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTAS-GQCL 183
Query: 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390
L +D PP +S ++ N +++++ DNT+++W +
Sbjct: 184 KTLIDDDNPP------------VSFVKFSPNGKYILAATL-DNTLKLWDYS 221
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAH--ESVVEDVSWHLKNENLFGSAGDDC 238
Y+++ + DN + LWD S + Y H E ++ + S +D
Sbjct: 205 YILAATLDNTLKLWDYSKG------KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 258
Query: 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS--SDTTVALF 286
+ IW+L+T + Q+++ H V + +P E ++A+A+ +D T+ L+
Sbjct: 259 LVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLW 307
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 106/228 (46%), Gaps = 25/228 (10%)
Query: 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219
L GH K + +SP E +L S S D I +W +K I H+ +
Sbjct: 17 FTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTI------SGHKLGIS 69
Query: 220 DVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS 279
DV+W + NL SA DD L IWD+ + + + +K H V +FNP + ++ + S
Sbjct: 70 DVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSF 127
Query: 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339
D +V ++D++ L L +H++ V V ++ + +++SS D +WD G
Sbjct: 128 DESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTAS-GQCL 184
Query: 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
L +D PP +S ++ N +++++ DNT+++W
Sbjct: 185 KTLIDDDNPP------------VSFVKFSPNGKYILAATL-DNTLKLW 219
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 16/93 (17%)
Query: 298 LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG 357
L+ HT+ V V++ PN E LASS+ D+ + +W A DG E S G
Sbjct: 19 LAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWG------------AYDGKFEKTIS--G 63
Query: 358 HKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390
HK ISD +W+ +D ++ S +DD T+++W ++
Sbjct: 64 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS 95
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAH--ESVVEDVSWHLKNENLFGSAGDDC 238
Y+++ + DN + LWD S + Y H E ++ + S +D
Sbjct: 206 YILAATLDNTLKLWDYSKG------KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259
Query: 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS--SDTTVALF 286
+ IW+L+T + Q+++ H V + +P E ++A+A+ +D T+ L+
Sbjct: 260 LVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLW 308
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 83/185 (44%), Gaps = 17/185 (9%)
Query: 131 VGTKTSSCEVYVFDCAKQAEKQQDDCDPDLR-LKGHDKEGYGLSWSPFKEGYLVSGSHDN 189
G S+C + F+ + QA++ D P R L GH + P +E L++GS D
Sbjct: 125 CGGLDSACSI--FNLSSQADR--DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQ 180
Query: 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR-TN 248
LWDV+ Q I H + V +S + N N+F S D + +WDLR T+
Sbjct: 181 TCVLWDVTT-GQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS 239
Query: 249 QTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQV 308
+ + HE ++N + F P + T S D T LFDMR + H +V+
Sbjct: 240 RAVRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMR---------TGHQLQVYNR 289
Query: 309 EWDPN 313
E D N
Sbjct: 290 EPDRN 294
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 83/184 (45%), Gaps = 17/184 (9%)
Query: 212 EAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNE 271
+ H V + W +N SA D +L++W+ T+Q +K H V +F P N
Sbjct: 63 QGHSGKVYSLDW-TPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAP-NG 120
Query: 272 WVLATASSDTTVALFDM-----RKMTVPL-HILSSHTEEVFQVEWDPNHETVLASSADDR 325
+A D+ ++F++ R +P+ +L+ H ++ P+ ET L + + D+
Sbjct: 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQ 180
Query: 326 RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQ 385
++WD+ +++ + + P GH A + S N + + S + D TV+
Sbjct: 181 TCVLWDVTT--GQRISIFGSEFPS-------GHTADVLSLSINSLNANMFISGSCDTTVR 231
Query: 386 VWQM 389
+W +
Sbjct: 232 LWDL 235
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 105/253 (41%), Gaps = 44/253 (17%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L+GH + Y L W+P K ++VS S D ++ +W+ AL K H + H V +
Sbjct: 62 LQGHSGKVYSLDWTPEKN-WIVSASQDGRLIVWN--ALTSQKT----HAIKLHCPWVMEC 114
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRT------NQTQQRV-KAHEKEVNYLSFNPYNEWVL 274
++ +++ G D I++L + N RV H+ + + P E L
Sbjct: 115 AFAPNGQSV-ACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRL 173
Query: 275 ATASSDTTVALFDM----RKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVW 330
T S D T L+D+ R S HT +V + + + + S + D + +W
Sbjct: 174 ITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLW 233
Query: 331 DLNRI------------GD----------EQLELDAEDGPPELLFSHGGHKAKISDFSWN 368
DL RI GD ++ ++DG L GH+ ++ + +
Sbjct: 234 DL-RITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPD 292
Query: 369 KNDPW--VISSVA 379
+ND +++SVA
Sbjct: 293 RNDNELPIVTSVA 305
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 106/228 (46%), Gaps = 25/228 (10%)
Query: 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219
L GH K + +SP E +L S S D I +W +K I H+ +
Sbjct: 23 FTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTI------SGHKLGIS 75
Query: 220 DVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS 279
DV+W + NL SA DD L IWD+ + + + +K H V +FNP + ++ + S
Sbjct: 76 DVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSF 133
Query: 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339
D +V ++D++ L L +H++ V V ++ + +++SS D +WD G
Sbjct: 134 DESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTAS-GQCL 190
Query: 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
L +D PP +S ++ N +++++ DNT+++W
Sbjct: 191 KTLIDDDNPP------------VSFVKFSPNGKYILAATL-DNTLKLW 225
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 16/93 (17%)
Query: 298 LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG 357
L+ HT+ V V++ PN E LASS+ D+ + +W A DG E S G
Sbjct: 25 LAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWG------------AYDGKFEKTIS--G 69
Query: 358 HKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390
HK ISD +W+ +D ++ S +DD T+++W ++
Sbjct: 70 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS 101
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAH--ESVVEDVSWHLKNENLFGSAGDDC 238
Y+++ + DN + LWD S + Y H E ++ + S +D
Sbjct: 212 YILAATLDNTLKLWDYSKG------KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265
Query: 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS--SDTTVALF 286
+ IW+L+T + Q+++ H V + +P E ++A+A+ +D T+ L+
Sbjct: 266 LVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLW 314
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 106/228 (46%), Gaps = 25/228 (10%)
Query: 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219
L GH K + +SP E +L S S D I +W +K I H+ +
Sbjct: 18 FTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTI------SGHKLGIS 70
Query: 220 DVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS 279
DV+W + NL SA DD L IWD+ + + + +K H V +FNP + ++ + S
Sbjct: 71 DVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSF 128
Query: 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339
D +V ++D++ L L +H++ V V ++ + +++SS D +WD G
Sbjct: 129 DESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTAS-GQCL 185
Query: 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
L +D PP +S ++ N +++++ DNT+++W
Sbjct: 186 KTLIDDDNPP------------VSFVKFSPNGKYILAATL-DNTLKLW 220
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 16/93 (17%)
Query: 298 LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG 357
L+ HT+ V V++ PN E LASS+ D+ + +W A DG E S G
Sbjct: 20 LAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWG------------AYDGKFEKTIS--G 64
Query: 358 HKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390
HK ISD +W+ +D ++ S +DD T+++W ++
Sbjct: 65 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS 96
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAH--ESVVEDVSWHLKNENLFGSAGDDC 238
Y+++ + DN + LWD S + Y H E ++ + S +D
Sbjct: 207 YILAATLDNTLKLWDYSKG------KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 260
Query: 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS--SDTTVALF 286
+ IW+L+T + Q+++ H V + +P E ++A+A+ +D T+ L+
Sbjct: 261 LVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLW 309
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 106/228 (46%), Gaps = 25/228 (10%)
Query: 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219
L GH K + +SP E +L S S D I +W +K I H+ +
Sbjct: 34 FTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTI------SGHKLGIS 86
Query: 220 DVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS 279
DV+W + NL SA DD L IWD+ + + + +K H V +FNP + ++ + S
Sbjct: 87 DVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSF 144
Query: 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339
D +V ++D++ L L +H++ V V ++ + +++SS D +WD G
Sbjct: 145 DESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTAS-GQCL 201
Query: 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
L +D PP +S ++ N +++++ DNT+++W
Sbjct: 202 KTLIDDDNPP------------VSFVKFSPNGKYILAATL-DNTLKLW 236
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 16/93 (17%)
Query: 298 LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG 357
L+ HT+ V V++ PN E LASS+ D+ + +W A DG E S G
Sbjct: 36 LAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWG------------AYDGKFEKTIS--G 80
Query: 358 HKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390
HK ISD +W+ +D ++ S +DD T+++W ++
Sbjct: 81 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS 112
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAH--ESVVEDVSWHLKNENLFGSAGDDC 238
Y+++ + DN + LWD S + Y H E ++ + S +D
Sbjct: 223 YILAATLDNTLKLWDYSKG------KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 276
Query: 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS--SDTTVALF 286
+ IW+L+T + Q+++ H V + +P E ++A+A+ +D T+ L+
Sbjct: 277 LVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLW 325
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 106/228 (46%), Gaps = 25/228 (10%)
Query: 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219
L GH K + +SP E +L S S D I +W +K I H+ +
Sbjct: 17 FTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTI------SGHKLGIS 69
Query: 220 DVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS 279
DV+W + NL SA DD L IWD+ + + + +K H V +FNP + ++ + S
Sbjct: 70 DVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSF 127
Query: 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339
D +V ++D++ L L +H++ V V ++ + +++SS D +WD G
Sbjct: 128 DESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTAS-GQCL 184
Query: 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
L +D PP +S ++ N +++++ DNT+++W
Sbjct: 185 KTLIDDDNPP------------VSFVKFSPNGKYILAATL-DNTLKLW 219
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 16/93 (17%)
Query: 298 LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG 357
L+ HT+ V V++ PN E LASS+ D+ + +W A DG E S G
Sbjct: 19 LAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWG------------AYDGKFEKTIS--G 63
Query: 358 HKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390
HK ISD +W+ +D ++ S +DD T+++W ++
Sbjct: 64 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS 95
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAH--ESVVEDVSWHLKNENLFGSAGDDC 238
Y+++ + DN + LWD S + Y H E ++ + S +D
Sbjct: 206 YILAATLDNTLKLWDYSKG------KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259
Query: 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS--SDTTVALF 286
+ IW+L+T + Q+++ H V + +P E ++A+A+ +D T+ L+
Sbjct: 260 LVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLW 308
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 106/228 (46%), Gaps = 25/228 (10%)
Query: 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219
L GH K + +SP E +L S S D I +W +K I H+ +
Sbjct: 13 FTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTI------SGHKLGIS 65
Query: 220 DVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS 279
DV+W + NL SA DD L IWD+ + + + +K H V +FNP + ++ + S
Sbjct: 66 DVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSF 123
Query: 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339
D +V ++D++ L L +H++ V V ++ + +++SS D +WD G
Sbjct: 124 DESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTAS-GQCL 180
Query: 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
L +D PP +S ++ N +++++ DNT+++W
Sbjct: 181 KTLIDDDNPP------------VSFVKFSPNGKYILAATL-DNTLKLW 215
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 16/93 (17%)
Query: 298 LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG 357
L+ HT+ V V++ PN E LASS+ D+ + +W A DG E S G
Sbjct: 15 LAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWG------------AYDGKFEKTIS--G 59
Query: 358 HKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390
HK ISD +W+ +D ++ S +DD T+++W ++
Sbjct: 60 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS 91
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAH--ESVVEDVSWHLKNENLFGSAGDDC 238
Y+++ + DN + LWD S + Y H E ++ + S +D
Sbjct: 202 YILAATLDNTLKLWDYSKG------KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 255
Query: 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS--SDTTVALF 286
+ IW+L+T + Q+++ H V + +P E ++A+A+ +D T+ L+
Sbjct: 256 LVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLW 304
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 106/228 (46%), Gaps = 25/228 (10%)
Query: 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219
L GH K + +SP E +L S S D I +W +K I H+ +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTI------SGHKLGIS 72
Query: 220 DVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS 279
DV+W + NL SA DD L IWD+ + + + +K H V +FNP + ++ + S
Sbjct: 73 DVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSF 130
Query: 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339
D +V ++D+ K L L +H++ V V ++ + +++SS D +WD G
Sbjct: 131 DESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTAS-GQCL 187
Query: 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
L +D PP +S ++ N +++++ DNT+++W
Sbjct: 188 KTLIDDDNPP------------VSFVKFSPNGKYILAATL-DNTLKLW 222
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 16/93 (17%)
Query: 298 LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG 357
L+ HT+ V V++ PN E LASS+ D+ + +W A DG E S G
Sbjct: 22 LAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWG------------AYDGKFEKTIS--G 66
Query: 358 HKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390
HK ISD +W+ +D ++ S +DD T+++W ++
Sbjct: 67 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS 98
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAH--ESVVEDVSWHLKNENLFGSAGDDC 238
Y+++ + DN + LWD S + Y H E ++ + S +D
Sbjct: 209 YILAATLDNTLKLWDYSKG------KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS--SDTTVALF 286
+ IW+L+T + Q+++ H V + +P E ++A+A+ +D T+ LF
Sbjct: 263 LVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLF 311
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 336 GDEQLELDAEDGPPE--LLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393
G +Q+ +E P L F+ GH +S ++ N W+ SS A D +++W D
Sbjct: 1 GGQQMGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIWGAYDGK 59
Query: 394 Y 394
+
Sbjct: 60 F 60
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 106/228 (46%), Gaps = 25/228 (10%)
Query: 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219
L GH K + +SP E +L S S D I +W +K I H+ +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTI------SGHKLGIS 72
Query: 220 DVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS 279
DV+W + NL SA DD L IWD+ + + + +K H V +FNP + ++ + S
Sbjct: 73 DVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSF 130
Query: 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339
D +V ++D+ K L L +H++ V V ++ + +++SS D +WD G
Sbjct: 131 DESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTAS-GQCL 187
Query: 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
L +D PP +S ++ N +++++ DNT+++W
Sbjct: 188 KTLIDDDNPP------------VSFVKFSPNGKYILAATL-DNTLKLW 222
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 16/93 (17%)
Query: 298 LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG 357
L+ HT+ V V++ PN E LASS+ D+ + +W A DG E S G
Sbjct: 22 LAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWG------------AYDGKFEKTIS--G 66
Query: 358 HKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390
HK ISD +W+ +D ++ S +DD T+++W ++
Sbjct: 67 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS 98
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAH--ESVVEDVSWHLKNENLFGSAGDDC 238
Y+++ + DN + LWD S + Y H E ++ + S +D
Sbjct: 209 YILAATLDNTLKLWDYSKG------KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS--SDTTVALF 286
+ IW+L+T + Q+++ H V + +P E ++A+A+ +D T+ L+
Sbjct: 263 LVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLY 311
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 336 GDEQLELDAEDGPPE--LLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393
G +Q+ +E P L F+ GH +S ++ N W+ SS A D +++W D
Sbjct: 1 GGQQMGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIWGAYDGK 59
Query: 394 Y 394
+
Sbjct: 60 F 60
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 12/190 (6%)
Query: 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219
L GH K + +SP E +L S S D I +W +K I H+ +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTI------SGHKLGIS 72
Query: 220 DVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS 279
DV+W + NL SA DD L IWD+ + + + +K H V +FNP + ++ + S
Sbjct: 73 DVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSF 130
Query: 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339
D +V ++D+ K + L L +H++ V V ++ + +++SS D +WD G
Sbjct: 131 DESVRIWDV-KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTAS-GQCL 187
Query: 340 LELDAEDGPP 349
L +D PP
Sbjct: 188 KTLIDDDNPP 197
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 16/96 (16%)
Query: 295 LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFS 354
+ L+ HT+ V V++ PN E LASS+ D+ + +W A DG E S
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWG------------AYDGKFEKTIS 65
Query: 355 HGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390
GHK ISD +W+ +D ++ S +DD T+++W ++
Sbjct: 66 --GHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS 98
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAH--ESVVEDVSWHLKNENLFGSAGDDC 238
Y+++ + DN + LWD S + Y H E ++ + S +D
Sbjct: 209 YILAATLDNDLKLWDYSKG------KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS--SDTTVALF 286
+ IW+L+T + Q+++ H V + +P E ++A+A+ +D T+ L+
Sbjct: 263 MVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLW 311
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 351 LLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394
L+F+ GH +S ++ N W+ SS A D +++W D +
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIWGAYDGKF 60
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 164 GHDKEGYGL--SWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
GH E Y + ++S ++VSGS DN + +W++ Q K I + + H VV
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL----QTKEI--VQKLQGHTDVVIST 288
Query: 222 SWHLKNENLFGSAG--DDCQLMIW 243
+ H EN+ SA +D + +W
Sbjct: 289 ACH-PTENIIASAALENDKTIKLW 311
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 106/228 (46%), Gaps = 25/228 (10%)
Query: 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219
L GH K + +SP E +L + S D I +W +K I H+ +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGE-WLAASSADKLIKIWGAYDGKFEKTI------SGHKLGIS 72
Query: 220 DVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS 279
DV+W + NL SA DD L IWD+ + + + +K H V +FNP + ++ + S
Sbjct: 73 DVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSF 130
Query: 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339
D +V ++D+ K L L +H++ V V ++ + +++SS D +WD G
Sbjct: 131 DESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTAS-GQCL 187
Query: 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
L +D PP +S ++ N +++++ DNT+++W
Sbjct: 188 KTLIDDDNPP------------VSFVKFSPNGKYILAATL-DNTLKLW 222
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 16/93 (17%)
Query: 298 LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG 357
L+ HT+ V V++ PN E + ASSAD + + +W A DG E S G
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSAD-KLIKIWG------------AYDGKFEKTIS--G 66
Query: 358 HKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390
HK ISD +W+ +D ++ S +DD T+++W ++
Sbjct: 67 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS 98
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAH--ESVVEDVSWHLKNENLFGSAGDDC 238
Y+++ + DN + LWD S + Y H E ++ + S +D
Sbjct: 209 YILAATLDNTLKLWDYSKG------KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS--SDTTVALF 286
+ IW+L+T + Q+++ H V + +P E ++A+A+ +D T+ L+
Sbjct: 263 LVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLW 311
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 131/303 (43%), Gaps = 63/303 (20%)
Query: 122 RCMPQKPNLVGTKTS--SC----EVYVFDCAK-QAEKQQDDCDPD--LRLKGHDKEGYGL 172
+ +PQ+ L G TS +C + YV A + + D + L+L GHD + L
Sbjct: 109 KFVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWAL 168
Query: 173 SWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSW-HLKNENLF 231
++ G LVSGS D + +WD+ HV+E H S V + KN
Sbjct: 169 KYA--HGGILVSGSTDRTVRVWDIKKGC------CTHVFEGHNSTVRCLDIVEYKNIKYI 220
Query: 232 GSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNY-LSF-----NPYNEWVL----------- 274
+ D L +W L + V H +E +Y L F NPY VL
Sbjct: 221 VTGSRDNTLHVWKL---PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS 277
Query: 275 ------ATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLM 328
+ S D T+ ++D+ +M L+ILS HT+ ++ +D + +++S D +
Sbjct: 278 GHGNIVVSGSYDNTLIVWDVAQMKC-LYILSGHTDRIYSTIYDHERKRCISASMDT-TIR 335
Query: 329 VWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388
+WDL E+G EL+++ GH A + +D +++S+ A D +++ W
Sbjct: 336 IWDL------------ENG--ELMYTLQGHTALVGLLRL--SDKFLVSAAA-DGSIRGWD 378
Query: 389 MTD 391
D
Sbjct: 379 AND 381
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 102/223 (45%), Gaps = 30/223 (13%)
Query: 182 LVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLM 241
+++G+ DN L S + I++M + H S V+ V ++ K +N+ S G++ ++
Sbjct: 81 IIAGALDNG-SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF 139
Query: 242 IWDLR---------TNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT 292
IWD+ T T + + EV L++N V A+A S +++D++
Sbjct: 140 IWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK 199
Query: 293 VPLHIL-----SSHTEEVFQVEWDPNHETVLAS---SADDRRLMVWDLNRIGDEQLELDA 344
+H+ S +++ VEW P + T +A+ S +D +++WDL
Sbjct: 200 EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN---------- 249
Query: 345 EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
+ P + L + GH+ I W D ++ S DNTV +W
Sbjct: 250 ANTPLQTL--NQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLW 290
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 88/184 (47%), Gaps = 13/184 (7%)
Query: 161 RLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQD-KVIDAMHVYEAHESVVE 219
R H + ++ ++ L SG ++ +I +WD++ + + ++ SV E
Sbjct: 108 RFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE 167
Query: 220 DVS--WHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK------AHEKEVNYLSFNPYNE 271
+S W+ ++F SAG IWDL+ + + +++++ + ++P N
Sbjct: 168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNS 227
Query: 272 WVLATAS---SDTTVALFDMRKMTVPLHILS-SHTEEVFQVEWDPNHETVLASSADDRRL 327
+ATA+ +D ++ ++D+R PL L+ H + + ++W E +L SS D +
Sbjct: 228 TRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTV 287
Query: 328 MVWD 331
++W+
Sbjct: 288 LLWN 291
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/157 (16%), Positives = 69/157 (43%), Gaps = 9/157 (5%)
Query: 237 DCQLMIWDLRTNQTQQRVKAHEKEVNYLSFN-PYNEWVLATASSDTTVALFDMRKMTVPL 295
D L +W L +++ + + + + + + +N ++A A + ++ L+ + +
Sbjct: 44 DSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAI 103
Query: 296 HIL---SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELL 352
+ + S+H+ V V+++ + VLAS ++ + +WD+N+ + + P
Sbjct: 104 NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTES-----PSNYTPLTP 158
Query: 353 FSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
++ +WN++ V +S N +W +
Sbjct: 159 GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDL 195
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/109 (19%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 187 HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR 246
+D I +WD+ ++ + + H+ + + W ++E+L S+G D +++W+
Sbjct: 238 NDPSILIWDL----RNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPE 293
Query: 247 TNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPL 295
+ + + A F P + A AS D + + ++ +T L
Sbjct: 294 SAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTL 342
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 127/303 (41%), Gaps = 63/303 (20%)
Query: 122 RCMPQKPNLVGTKTS--SC----EVYVFDCAKQAEKQQDDCDPD---LRLKGHDKEGYGL 172
+ +PQ+ L G TS +C + YV A + D L+L GHD + L
Sbjct: 109 KFVPQRTTLRGHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWAL 168
Query: 173 SWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSW-HLKNENLF 231
++ G LVSGS D + +WD+ HV+E H S V + KN
Sbjct: 169 KYA--HGGILVSGSTDRTVRVWDIKKGC------CTHVFEGHNSTVRCLDIVEYKNIKYI 220
Query: 232 GSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNY-LSF-----NPYNEWVL----------- 274
+ D L +W L + V H +E +Y L F NPY VL
Sbjct: 221 VTGSRDNTLHVWKL---PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVS 277
Query: 275 ------ATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLM 328
+ S D T+ ++D+ + L+ILS HT+ ++ +D + +++S D +
Sbjct: 278 GHGNIVVSGSYDNTLIVWDVAQXKC-LYILSGHTDRIYSTIYDHERKRCISASXDT-TIR 335
Query: 329 VWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388
+WDL E+G EL ++ GH A + +D +++S+ A D +++ W
Sbjct: 336 IWDL------------ENG--ELXYTLQGHTALVGLLRL--SDKFLVSAAA-DGSIRGWD 378
Query: 389 MTD 391
D
Sbjct: 379 AND 381
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 99/225 (44%), Gaps = 31/225 (13%)
Query: 182 LVSGSHDNKICLWDVSALAQDKVIDAMH-VYEAHESVVEDVSWHLKNENLFG-SAGDDCQ 239
L+SGS D + +W + Q+ H H V D++ L EN F S+ D
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLA--LSQENCFAISSSWDKT 99
Query: 240 LMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFD-MRKMTVPLHIL 298
L +WDLRT T +R H+ EV ++F+P N +L +A ++ + L++ + +
Sbjct: 100 LRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQIL-SAGAEREIKLWNILGECKFSSAEK 158
Query: 299 SSHTEEVFQVEWDPNHETV---------LASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349
+H++ V V + P ++ AS D RL VW+ N
Sbjct: 159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF--------------- 203
Query: 350 ELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394
++ ++ H++ ++ S + N + I++ D + +W + + Y
Sbjct: 204 QIRYTFKAHESNVNHLSISPNGKY-IATGGKDKKLLIWDILNLTY 247
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 90/182 (49%), Gaps = 21/182 (11%)
Query: 161 RLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
R GH E Y +++SP L +G+ + +I LW++ L + K A E H V
Sbjct: 113 RFVGHQSEVYSVAFSPDNRQILSAGA-EREIKLWNI--LGECKFSSAEK--ENHSDWVSC 167
Query: 221 VSWH--LKNEN-------LFGSAGDDCQLMIWDLRTN-QTQQRVKAHEKEVNYLSFNPYN 270
V + +K+ N F S G D +L +W+ TN Q + KAHE VN+LS +P
Sbjct: 168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN--TNFQIRYTFKAHESNVNHLSISPNG 225
Query: 271 EWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVW 330
+++ AT D + ++D+ +T P + + + Q+ ++P + V + D+ + ++
Sbjct: 226 KYI-ATGGKDKKLLIWDILNLTYPQREFDAGS-TINQIAFNPKLQWVAVGT--DQGVKIF 281
Query: 331 DL 332
+L
Sbjct: 282 NL 283
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 101/231 (43%), Gaps = 34/231 (14%)
Query: 161 RLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
R+ + G+ + + +VSG DN I +WD + L +++ H V
Sbjct: 125 RIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRIL------TGHTGSVLC 178
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD 280
+ + +E + + D + +WD+ T + + H + V +L F N ++ T S D
Sbjct: 179 LQY---DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF---NNGMMVTCSKD 232
Query: 281 TTVALFDMRKMT--VPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE 338
++A++DM T +L H V V++D + + S++ DR + VW+ +
Sbjct: 233 RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY---IVSASGDRTIKVWNTS----- 284
Query: 339 QLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
E + + GHK I+ + D V+S + DNT+++W +
Sbjct: 285 ---------TCEFVRTLNGHKRGIACLQY--RDRLVVSG-SSDNTIRLWDI 323
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 54/179 (30%)
Query: 156 CDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHE 215
C+ L GH + G++ +++ +VSGS DN I LWD+ A + V E HE
Sbjct: 286 CEFVRTLNGHKR---GIACLQYRDRLVVSGSSDNTIRLWDIECGA------CLRVLEGHE 336
Query: 216 SVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLA 275
+V + N+ + A D ++ +WDL
Sbjct: 337 ELVRCI--RFDNKRIVSGAYDG-KIKVWDL------------------------------ 363
Query: 276 TASSDTTVALFDMR--KMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDL 332
VA D R T+ L L H+ VF++++D E + SS+ D +++WD
Sbjct: 364 -------VAALDPRAPAGTLCLRTLVEHSGRVFRLQFD---EFQIVSSSHDDTILIWDF 412
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 7/171 (4%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L GH +E GL W+P +L SG +DN + +W SA + + + + H+ V+ V
Sbjct: 237 LSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWP-SAPGEGGWVP-LQTFTQHQGAVKAV 293
Query: 222 SWHLKNENLFGSAG--DDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS 279
+W N+ + G D + IW++ + V AH + + L Y E + +
Sbjct: 294 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFA 353
Query: 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVW 330
+ ++ M + L HT V + P+ TV AS+A D L +W
Sbjct: 354 QNQLVIWKYPTM-AKVAELKGHTSRVLSLTMSPDGATV-ASAAADETLRLW 402
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 76/161 (47%), Gaps = 9/161 (5%)
Query: 170 YGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNEN 229
Y L+ + G +++ + DN + LW S+ ++ + + + E + V+W +K N
Sbjct: 117 YYLNLVDWSSGNVLAVALDNSVYLWSASS---GDILQLLQMEQPGE-YISSVAW-IKEGN 171
Query: 230 LFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMR 289
++ +WD++ + + + +H V LS+N Y +L++ S + D+R
Sbjct: 172 YLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHHDVR 228
Query: 290 KMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVW 330
+ LS H++EV + W P+ LAS +D + VW
Sbjct: 229 VAEHHVATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVW 268
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 7/171 (4%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L GH +E GL W+P +L SG +DN + +W SA + + + + H+ V+ V
Sbjct: 226 LSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWP-SAPGEGGWVP-LQTFTQHQGAVKAV 282
Query: 222 SWHLKNENLFGSAG--DDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS 279
+W N+ + G D + IW++ + V AH + + L Y E + +
Sbjct: 283 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFA 342
Query: 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVW 330
+ ++ M + L HT V + P+ TV AS+A D L +W
Sbjct: 343 QNQLVIWKYPTM-AKVAELKGHTSRVLSLTMSPDGATV-ASAAADETLRLW 391
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 76/161 (47%), Gaps = 9/161 (5%)
Query: 170 YGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNEN 229
Y L+ + G +++ + DN + LW S+ ++ + + + E + V+W +K N
Sbjct: 106 YYLNLVDWSSGNVLAVALDNSVYLWSASS---GDILQLLQMEQPGE-YISSVAW-IKEGN 160
Query: 230 LFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMR 289
++ +WD++ + + + +H V LS+N Y +L++ S + D+R
Sbjct: 161 YLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHHDVR 217
Query: 290 KMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVW 330
+ LS H++EV + W P+ LAS +D + VW
Sbjct: 218 VAEHHVATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVW 257
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 7/171 (4%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L GH +E GL W+P +L SG +DN + +W SA + + + + H+ V+ V
Sbjct: 146 LSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWP-SAPGEGGWVP-LQTFTQHQGAVKAV 202
Query: 222 SWHLKNENLFGSAG--DDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS 279
+W N+ + G D + IW++ + V AH + + L Y E + +
Sbjct: 203 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFA 262
Query: 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVW 330
+ ++ M + L HT V + P+ TV AS+A D L +W
Sbjct: 263 QNQLVIWKYPTMA-KVAELKGHTSRVLSLTMSPDGATV-ASAAADETLRLW 311
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 76/161 (47%), Gaps = 9/161 (5%)
Query: 170 YGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNEN 229
Y L+ + G +++ + DN + LW S+ ++ + + + E + V+W +K N
Sbjct: 26 YYLNLVDWSSGNVLAVALDNSVYLWSASS---GDILQLLQMEQPGE-YISSVAW-IKEGN 80
Query: 230 LFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMR 289
++ +WD++ + + + +H V LS+N Y +L++ S + D+R
Sbjct: 81 YLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHHDVR 137
Query: 290 KMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVW 330
+ LS H++EV + W P+ LAS +D + VW
Sbjct: 138 VAEHHVATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVW 177
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 104/234 (44%), Gaps = 27/234 (11%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L+GH+ L+ S + L+S S D + W ++ Q K + ++ H +V+D
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ-KFGVPVRSFKGHSHIVQDC 71
Query: 222 SWHLKNENLFG-SAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD 280
+ L + + SA D L +WD+ T +T QR H+ +V + + ++ + S D
Sbjct: 72 T--LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXII-SGSRD 128
Query: 281 TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHET-----VLASSADDRRLMVWDLNRI 335
T+ ++ ++ L L H + V QV PN + + S+ +D+ + W+LN+
Sbjct: 129 KTIKVWTIKGQC--LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQF 186
Query: 336 GDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
Q+E D GH + I+ + D +I+S D + +W +
Sbjct: 187 ---QIEAD-----------FIGHNSNINTLT-ASPDGTLIASAGKDGEIXLWNL 225
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/218 (20%), Positives = 88/218 (40%), Gaps = 26/218 (11%)
Query: 178 KEGYLVSGSHDNKICLWDVSA------LAQDKVIDAMHVYEAHESVVEDVSWHLKNENLF 231
K ++SGS D I +W + L + + + V ++ + V+
Sbjct: 118 KASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT--------I 169
Query: 232 GSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKM 291
SAG+D + W+L Q + H +N L+ +P ++A+A D + L+++
Sbjct: 170 ISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGT-LIASAGKDGEIXLWNLAAK 228
Query: 292 TVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPEL 351
+ S +EVF + + PN + A++A ++ D + D D PE
Sbjct: 229 KAXYTL--SAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVD--------DLRPEF 278
Query: 352 LFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
+ +W+ + + + DN ++VWQ+
Sbjct: 279 AGYSKAAEPHAVSLAWSADGQTLFAGYT-DNVIRVWQV 315
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 104/234 (44%), Gaps = 27/234 (11%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L+GH+ L+ S + L+S S D + W ++ Q K + ++ H +V+D
Sbjct: 7 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ-KFGVPVRSFKGHSHIVQDC 65
Query: 222 SWHLKNENLFG-SAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD 280
+ L + + SA D L +WD+ T +T QR H+ +V + + ++ + S D
Sbjct: 66 T--LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII-SGSRD 122
Query: 281 TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHET-----VLASSADDRRLMVWDLNRI 335
T+ ++ ++ L L H + V QV PN + + S+ +D+ + W+LN+
Sbjct: 123 KTIKVWTIKGQC--LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 180
Query: 336 GDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
Q+E D GH + I+ + D +I+S D + +W +
Sbjct: 181 ---QIEAD-----------FIGHNSNINTLT-ASPDGTLIASAGKDGEIMLWNL 219
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 91/218 (41%), Gaps = 26/218 (11%)
Query: 178 KEGYLVSGSHDNKICLWDVSA------LAQDKVIDAMHVYEAHESVVEDVSWHLKNENLF 231
K ++SGS D I +W + L + + + V ++ + V+
Sbjct: 112 KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT--------I 163
Query: 232 GSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKM 291
SAG+D + W+L Q + H +N L+ +P ++A+A D + L+++
Sbjct: 164 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAK 222
Query: 292 TVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPEL 351
++ LS+ +EVF + + PN + A++A ++ D + D D PE
Sbjct: 223 K-AMYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVD--------DLRPEF 272
Query: 352 LFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
+ +W+ + + + DN ++VWQ+
Sbjct: 273 AGYSKAAEPHAVSLAWSADGQTLFAGYT-DNVIRVWQV 309
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 104/234 (44%), Gaps = 27/234 (11%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L+GH+ L+ S + L+S S D + W ++ Q K + ++ H +V+D
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ-KFGVPVRSFKGHSHIVQDC 71
Query: 222 SWHLKNENLFG-SAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD 280
+ L + + SA D L +WD+ T +T QR H+ +V + + ++ + S D
Sbjct: 72 T--LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII-SGSRD 128
Query: 281 TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHET-----VLASSADDRRLMVWDLNRI 335
T+ ++ ++ L L H + V QV PN + + S+ +D+ + W+LN+
Sbjct: 129 KTIKVWTIKGQC--LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 336 GDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
Q+E D GH + I+ + D +I+S D + +W +
Sbjct: 187 ---QIEAD-----------FIGHNSNINTLT-ASPDGTLIASAGKDGEIMLWNL 225
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 90/217 (41%), Gaps = 26/217 (11%)
Query: 178 KEGYLVSGSHDNKICLWDVSA------LAQDKVIDAMHVYEAHESVVEDVSWHLKNENLF 231
K ++SGS D I +W + L + + + V ++ + V+
Sbjct: 118 KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT--------I 169
Query: 232 GSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKM 291
SAG+D + W+L Q + H +N L+ +P ++A+A D + L+++
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAK 228
Query: 292 TVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPEL 351
++ LS+ +EVF + + PN + A++A ++ D + D D PE
Sbjct: 229 K-AMYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVD--------DLRPEF 278
Query: 352 LFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388
+ +W+ + + + DN ++VWQ
Sbjct: 279 AGYSKAAEPHAVSLAWSADGQTLFAGYT-DNVIRVWQ 314
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 104/234 (44%), Gaps = 27/234 (11%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L+GH+ L+ S + L+S S D + W ++ Q K + ++ H +V+D
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ-KFGVPVRSFKGHSHIVQDC 71
Query: 222 SWHLKNENLFG-SAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD 280
+ L + + SA D L +WD+ T +T QR H+ +V + + ++ + S D
Sbjct: 72 T--LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII-SGSRD 128
Query: 281 TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHET-----VLASSADDRRLMVWDLNRI 335
T+ ++ ++ L L H + V QV PN + + S+ +D+ + W+LN+
Sbjct: 129 KTIKVWTIKGQC--LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 336 GDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
Q+E D GH + I+ + D +I+S D + +W +
Sbjct: 187 ---QIEAD-----------FIGHNSNINTLT-ASPDGTLIASAGKDGEIMLWNL 225
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 91/218 (41%), Gaps = 26/218 (11%)
Query: 178 KEGYLVSGSHDNKICLWDVSA------LAQDKVIDAMHVYEAHESVVEDVSWHLKNENLF 231
K ++SGS D I +W + L + + + V ++ + V+
Sbjct: 118 KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT--------I 169
Query: 232 GSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKM 291
SAG+D + W+L Q + H +N L+ +P ++A+A D + L+++
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAK 228
Query: 292 TVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPEL 351
++ LS+ +EVF + + PN + A++A ++ D + D D PE
Sbjct: 229 K-AMYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVD--------DLRPEF 278
Query: 352 LFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
+ +W+ + + + DN ++VWQ+
Sbjct: 279 AGYSAAAEPHAVSLAWSADGQTLFAGYT-DNVIRVWQV 315
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 104/234 (44%), Gaps = 27/234 (11%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L+GH+ L+ S + L+S S D + W ++ Q K + ++ H +V+D
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ-KFGVPVRSFKGHSHIVQDC 71
Query: 222 SWHLKNENLFG-SAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD 280
+ L + + SA D L +WD+ T +T QR H+ +V + + ++ + S D
Sbjct: 72 T--LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII-SGSRD 128
Query: 281 TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHET-----VLASSADDRRLMVWDLNRI 335
T+ ++ ++ L L H + V QV PN + + S+ +D+ + W+LN+
Sbjct: 129 KTIKVWTIKGQC--LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 336 GDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
Q+E D GH + I+ + D +I+S D + +W +
Sbjct: 187 ---QIEAD-----------FIGHNSNINTLT-ASPDGTLIASAGKDGEIMLWNL 225
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 91/218 (41%), Gaps = 26/218 (11%)
Query: 178 KEGYLVSGSHDNKICLWDVSA------LAQDKVIDAMHVYEAHESVVEDVSWHLKNENLF 231
K ++SGS D I +W + L + + + V ++ + V+
Sbjct: 118 KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT--------I 169
Query: 232 GSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKM 291
SAG+D + W+L Q + H +N L+ +P ++A+A D + L+++
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAK 228
Query: 292 TVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPEL 351
++ LS+ +EVF + + PN + A++A ++ D + D D PE
Sbjct: 229 K-AMYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVD--------DLRPEF 278
Query: 352 LFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
+ +W+ + + + DN ++VWQ+
Sbjct: 279 AGYSKAAEPHAVSLAWSADGQTLFAGYT-DNVIRVWQV 315
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 104/234 (44%), Gaps = 27/234 (11%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L+GH+ L+ S + L+S S D + W ++ Q K + ++ H +V+D
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ-KFGVPVRSFKGHSHIVQDC 71
Query: 222 SWHLKNENLFG-SAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD 280
+ L + + SA D L +WD+ T +T QR H+ +V + + ++ + S D
Sbjct: 72 T--LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII-SGSRD 128
Query: 281 TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHET-----VLASSADDRRLMVWDLNRI 335
T+ ++ ++ L L H + V QV PN + + S+ +D+ + W+LN+
Sbjct: 129 KTIKVWTIKGQC--LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 336 GDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
Q+E D GH + I+ + D +I+S D + +W +
Sbjct: 187 ---QIEAD-----------FIGHNSNINTLT-ASPDGTLIASAGKDGEIMLWNL 225
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 91/218 (41%), Gaps = 26/218 (11%)
Query: 178 KEGYLVSGSHDNKICLWDVSA------LAQDKVIDAMHVYEAHESVVEDVSWHLKNENLF 231
K ++SGS D I +W + L + + + V ++ + V+
Sbjct: 118 KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT--------I 169
Query: 232 GSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKM 291
SAG+D + W+L Q + H +N L+ +P ++A+A D + L+++
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAK 228
Query: 292 TVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPEL 351
++ LS+ +EVF + + PN + A++A ++ D + D D PE
Sbjct: 229 K-AMYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVD--------DLRPEF 278
Query: 352 LFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
+ +W+ + + + DN ++VWQ+
Sbjct: 279 AGYSKAAEPHAVSLAWSADGQTLFAGYT-DNVIRVWQV 315
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 89/209 (42%), Gaps = 13/209 (6%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
LKGH+ ++ +P ++S S D I +W ++ + I H V DV
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI-PQRALRGHSHFVSDV 69
Query: 222 SWHLKNENLFGSAGD-DCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD 280
+ ++ F +G D L +WDL T T +R H K+V ++F+ N +++ S D
Sbjct: 70 V--ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVS-GSRD 126
Query: 281 TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHET-VLASSADDRRLMVWDL------- 332
T+ L++ + SH+E V V + PN ++ S D+ + VW+L
Sbjct: 127 KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT 186
Query: 333 NRIGDEQLELDAEDGPPELLFSHGGHKAK 361
N IG P L + GG +
Sbjct: 187 NHIGHTGYLNTVTVSPDGSLCASGGKDGQ 215
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 80/208 (38%), Gaps = 48/208 (23%)
Query: 161 RLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHV-------YEA 213
R GH K+ +++S +VSGS D I LW+ + + V D H +
Sbjct: 100 RFVGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP 158
Query: 214 HESVVEDVS---------WHLKN----------------------ENLFGSAGDDCQLMI 242
+ S VS W+L N +L S G D Q M+
Sbjct: 159 NSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAML 218
Query: 243 WDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHT 302
WDL + + + +N L F+P W+ A++ ++ ++D+ I+
Sbjct: 219 WDLNEGKHLYTLDGGDI-INALCFSPNRYWLC--AATGPSIKIWDLEGKI----IVDELK 271
Query: 303 EEVFQV--EWDPNHETVLASSADDRRLM 328
+EV + +P T LA SAD + L
Sbjct: 272 QEVISTSSKAEPPQCTSLAWSADGQTLF 299
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 89/209 (42%), Gaps = 13/209 (6%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
LKGH+ ++ +P ++S S D I +W ++ + I H V DV
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI-PQRALRGHSHFVSDV 92
Query: 222 SWHLKNENLFGSAGD-DCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD 280
+ ++ F +G D L +WDL T T +R H K+V ++F+ N +++ S D
Sbjct: 93 V--ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVS-GSRD 149
Query: 281 TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHET-VLASSADDRRLMVWDL------- 332
T+ L++ + SH+E V V + PN ++ S D+ + VW+L
Sbjct: 150 KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT 209
Query: 333 NRIGDEQLELDAEDGPPELLFSHGGHKAK 361
N IG P L + GG +
Sbjct: 210 NHIGHTGYLNTVTVSPDGSLCASGGKDGQ 238
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 80/208 (38%), Gaps = 48/208 (23%)
Query: 161 RLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHV-------YEA 213
R GH K+ +++S +VSGS D I LW+ + + V D H +
Sbjct: 123 RFVGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP 181
Query: 214 HESVVEDVS---------WHLKN----------------------ENLFGSAGDDCQLMI 242
+ S VS W+L N +L S G D Q M+
Sbjct: 182 NSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAML 241
Query: 243 WDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHT 302
WDL + + + +N L F+P W+ A++ ++ ++D+ I+
Sbjct: 242 WDLNEGKHLYTLDGGDI-INALCFSPNRYWLC--AATGPSIKIWDLEGKI----IVDELK 294
Query: 303 EEVFQV--EWDPNHETVLASSADDRRLM 328
+EV + +P T LA SAD + L
Sbjct: 295 QEVISTSSKAEPPQCTSLAWSADGQTLF 322
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 69/131 (52%), Gaps = 9/131 (6%)
Query: 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219
L +K H+ E ++S + Y+ + S D K+ +WD A K++ H Y+ H V
Sbjct: 658 LDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDS---ATGKLV---HTYDEHSEQVN 710
Query: 220 DVSWHLKNENLFGSAG-DDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS 278
+ K+ +L + G +D L +WDL + + + H VN+ F+P +E +LA+ S
Sbjct: 711 CCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE-LLASCS 769
Query: 279 SDTTVALFDMR 289
+D T+ L+D+R
Sbjct: 770 ADGTLRLWDVR 780
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 77/158 (48%), Gaps = 18/158 (11%)
Query: 231 FGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRK 290
S G D L ++ T + +KAHE EV +F+ + ++ AT S+D V ++D
Sbjct: 637 IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYI-ATCSADKKVKIWDSAT 695
Query: 291 MTVPLHILSSHTEEVFQVEW-DPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349
+ +H H+E+V + + ++ +LA+ ++D L +WDLN+
Sbjct: 696 GKL-VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ--------------K 740
Query: 350 ELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
E + GH ++ ++ +D +++S + D T+++W
Sbjct: 741 ECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLW 777
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 14/180 (7%)
Query: 164 GHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV-- 221
GH +SP E L S S D + LWDV + + K I+ + + E EDV
Sbjct: 748 GHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEV 806
Query: 222 -----SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKEVNYLSFNPYNEWVLA 275
SW + + +A + +++++D+ T+ + H + Y F+PY+ +
Sbjct: 807 IVKCCSWSADGDKIIVAAKN--KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH-LAV 863
Query: 276 TASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI 335
A S V L+++ + + H V V + P+ + L +S DD+ + VW+ ++
Sbjct: 864 IALSQYCVELWNIDS-RLKVADCRGHLSWVHGVMFSPDGSSFLTAS-DDQTIRVWETKKV 921
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 69/131 (52%), Gaps = 9/131 (6%)
Query: 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219
L +K H+ E ++S + Y+ + S D K+ +WD A K++ H Y+ H V
Sbjct: 651 LDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDS---ATGKLV---HTYDEHSEQVN 703
Query: 220 DVSWHLKNENLFGSAG-DDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS 278
+ K+ +L + G +D L +WDL + + + H VN+ F+P +E +LA+ S
Sbjct: 704 CCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE-LLASCS 762
Query: 279 SDTTVALFDMR 289
+D T+ L+D+R
Sbjct: 763 ADGTLRLWDVR 773
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 77/158 (48%), Gaps = 18/158 (11%)
Query: 231 FGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRK 290
S G D L ++ T + +KAHE EV +F+ + ++ AT S+D V ++D
Sbjct: 630 IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYI-ATCSADKKVKIWDSAT 688
Query: 291 MTVPLHILSSHTEEVFQVEW-DPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349
+ +H H+E+V + + ++ +LA+ ++D L +WDLN+
Sbjct: 689 GKL-VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ--------------K 733
Query: 350 ELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
E + GH ++ ++ +D +++S + D T+++W
Sbjct: 734 ECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLW 770
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 14/180 (7%)
Query: 164 GHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV-- 221
GH +SP E L S S D + LWDV + + K I+ + + E EDV
Sbjct: 741 GHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEV 799
Query: 222 -----SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKEVNYLSFNPYNEWVLA 275
SW + + +A + +++++D+ T+ + H + Y F+PY+ +
Sbjct: 800 IVKCCSWSADGDKIIVAAKN--KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH-LAV 856
Query: 276 TASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI 335
A S V L+++ + + H V V + P+ + L +S DD+ + VW+ ++
Sbjct: 857 IALSQYCVELWNIDS-RLKVADCRGHLSWVHGVMFSPDGSSFLTAS-DDQTIRVWETKKV 914
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 96/207 (46%), Gaps = 23/207 (11%)
Query: 182 LVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLM 241
+++ S D LWDV + +++ + H + A + + D++ + N F S G D + M
Sbjct: 169 ILTASGDGTCALWDVES---GQLLQSFHGHGA-DVLCLDLA-PSETGNTFVSGGCDKKAM 223
Query: 242 IWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRK-MTVPLHILSS 300
+WD+R+ Q Q + HE +VN + + P + A+ S D T L+D+R V ++ S
Sbjct: 224 VWDMRSGQCVQAFETHESDVNSVRYYPSGD-AFASGSDDATCRLYDLRADREVAIYSKES 282
Query: 301 HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKA 360
V++ + + A +D + VWD+ + +LF GH+
Sbjct: 283 IIFGASSVDFSLSGRLLFA-GYNDYTINVWDV-----------LKGSRVSILF---GHEN 327
Query: 361 KISDFSWNKNDPWVISSVADDNTVQVW 387
++S + D S + D+T++VW
Sbjct: 328 RVSTLRVSP-DGTAFCSGSWDHTLRVW 353
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 76/183 (41%), Gaps = 27/183 (14%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
LKGH + + W K +VS S D K+ +WD + +K +V
Sbjct: 60 LKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWD--SFTTNK----------EHAVTMPC 106
Query: 222 SWHLK-----NENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEV----NYLSFNPY--N 270
+W + + G D + ++ L T + + A +K V NYLS + +
Sbjct: 107 TWVMACAYAPSGCAIACGGLDNKCSVYPL-TFDKNENMAAKKKSVAMHTNYLSACSFTNS 165
Query: 271 EWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHE-TVLASSADDRRLMV 329
+ + TAS D T AL+D+ + L H +V ++ P+ S D++ MV
Sbjct: 166 DMQILTASGDGTCALWDVESGQL-LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMV 224
Query: 330 WDL 332
WD+
Sbjct: 225 WDM 227
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 89/215 (41%), Gaps = 33/215 (15%)
Query: 175 SPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSA 234
S ++ ++SGS D + +W+ + + +H H S V + H E S
Sbjct: 165 SQMRDNIIISGSTDRTLKVWNA------ETGECIHTLYGHTSTVRCMHLH---EKRVVSG 215
Query: 235 GDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVP 294
D L +WD+ T Q + H V + ++ + + + D V ++D T
Sbjct: 216 SRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR---VVSGAYDFMVKVWDPETETC- 271
Query: 295 LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFS 354
LH L HT V+ +++D H + S + D + VWD+ E G + +
Sbjct: 272 LHTLQGHTNRVYSLQFDGIH---VVSGSLDTSIRVWDV------------ETG--NCIHT 314
Query: 355 HGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
GH++ S N ++ S D+TV++W +
Sbjct: 315 LTGHQSLTSGMELKDN---ILVSGNADSTVKIWDI 346
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L GH G+ K+ LVSG+ D+ + +WD+ + + + H+S V +
Sbjct: 315 LTGHQSLTSGM---ELKDNILVSGNADSTVKIWDIKT---GQCLQTLQGPNKHQSAVTCL 368
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQ 249
+ N+N ++ DD + +WDL+T +
Sbjct: 369 QF---NKNFVITSSDDGTVKLWDLKTGE 393
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 8/121 (6%)
Query: 213 AHESVVEDVSWHLKNENLFGSAGDDCQLMIWD-------LRTNQTQQRVKAHEKEVNYLS 265
H + V D++W N+N+ S +DC +M+W+ L + ++ H K V ++
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 266 FNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS-HTEEVFQVEWDPNHETVLASSADD 324
++P + VL +A D + ++D+ L + H + ++ V+W + + S D
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK 198
Query: 325 R 325
R
Sbjct: 199 R 199
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 26/171 (15%)
Query: 226 KNENLFG--SAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTV 283
K ++FG + D C D+R +QT + + + NP ++ AS
Sbjct: 10 KFRHVFGQPAKADQCY---EDVRVSQTTW-------DSGFCAVNPKFMALICEASGGGAF 59
Query: 284 ALFDMRKM-----TVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE 338
+ + K VPL + HT V + W P+++ V+AS ++D +MVW+ I D
Sbjct: 60 LVLPLGKTGRVDKNVPL--VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWE---IPDG 114
Query: 339 QLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
L L E + + GH ++ +W+ V+ S DN + VW +
Sbjct: 115 GLVLPLR----EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV 161
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 83/196 (42%), Gaps = 17/196 (8%)
Query: 164 GHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV--SALAQDKVIDAMHVYEAHESVVEDV 221
GH ++W P + + SGS D + +W++ L + + + E H V V
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL-PLREPVITLEGHTKRVGIV 137
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK--AHEKEVNYLSFNPYNEWVLATASS 279
+WH +N+ SAG D +++WD+ T + H + + ++ + ++ T+
Sbjct: 138 AWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS-RDGALICTSCR 196
Query: 280 DTTVALFDMRKMTVPL-----HILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334
D V + + RK TV H + VF E T S +R++ +WD
Sbjct: 197 DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEG--KILTTGFSRMSERQVALWDTKH 254
Query: 335 IGDEQL---ELDAEDG 347
+ +E L ELD G
Sbjct: 255 L-EEPLSLQELDTSSG 269
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 80/213 (37%), Gaps = 9/213 (4%)
Query: 125 PQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVS 184
P N++ + + C V V++ +P + L+GH K ++W P + L+S
Sbjct: 91 PHNDNVIASGSEDCTVMVWEIPDGGLVLPLR-EPVITLEGHTKRVGIVAWHPTAQNVLLS 149
Query: 185 GSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWD 244
DN I +WDV A + + H + V W + S D +I
Sbjct: 150 AGCDNVILVWDVGTGAAVLTLGP----DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEP 205
Query: 245 LRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATA---SSDTTVALFDMRKMTVPLHILSSH 301
+ ++ + HE + +L T S+ VAL+D + + PL +
Sbjct: 206 RKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD 265
Query: 302 TEE-VFQVEWDPNHETVLASSADDRRLMVWDLN 333
T V +DP+ V D + +++
Sbjct: 266 TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEIT 298
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 357 GHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392
GH A + D +W ++ VI+S ++D TV VW++ D
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 8/121 (6%)
Query: 213 AHESVVEDVSWHLKNENLFGSAGDDCQLMIWD-------LRTNQTQQRVKAHEKEVNYLS 265
H + V D++W N+N+ S +DC +M+W+ L + ++ H K V ++
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 266 FNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS-HTEEVFQVEWDPNHETVLASSADD 324
++P + VL +A D + ++D+ L + H + ++ V+W + + S D
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK 198
Query: 325 R 325
R
Sbjct: 199 R 199
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 26/171 (15%)
Query: 226 KNENLFG--SAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTV 283
K ++FG + D C D+R +QT + + + NP ++ AS
Sbjct: 10 KFRHVFGQPAKADQCY---EDVRVSQTTW-------DSGFCAVNPKFMALIXEASGGGAF 59
Query: 284 ALFDMRKM-----TVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE 338
+ + K VPL + HT V + W P+++ V+AS ++D +MVW+ I D
Sbjct: 60 LVLPLGKTGRVDKNVPL--VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWE---IPDG 114
Query: 339 QLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
L L E + + GH ++ +W+ V+ S DN + VW +
Sbjct: 115 GLVLPLR----EPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDV 161
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 6/136 (4%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV--SALAQDKVIDAMHVYEAHESVVE 219
+ GH ++W P + + SGS D + +W++ L + + + E H V
Sbjct: 77 VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVL-PLREPVITLEGHTKRVG 135
Query: 220 DVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK--AHEKEVNYLSFNPYNEWVLATA 277
V+WH +N+ SAG D +++WD+ T + H + + ++ + ++ T+
Sbjct: 136 IVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS-RDGALICTS 194
Query: 278 SSDTTVALFDMRKMTV 293
D V + + RK TV
Sbjct: 195 CRDKRVRVIEPRKGTV 210
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 80/213 (37%), Gaps = 9/213 (4%)
Query: 125 PQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVS 184
P N++ + + C V V++ +P + L+GH K ++W P + L+S
Sbjct: 91 PHNDNVIASGSEDCTVMVWEIPDGGLVLPLR-EPVITLEGHTKRVGIVAWHPTAQNVLLS 149
Query: 185 GSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWD 244
DN I +WDV A + + H + V W + S D +I
Sbjct: 150 AGXDNVILVWDVGTGAAVLTLGP----DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEP 205
Query: 245 LRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATA---SSDTTVALFDMRKMTVPLHILSSH 301
+ ++ + HE + +L T S+ VAL+D + + PL +
Sbjct: 206 RKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD 265
Query: 302 TEE-VFQVEWDPNHETVLASSADDRRLMVWDLN 333
T V +DP+ V D + +++
Sbjct: 266 TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEIT 298
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 357 GHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392
GH A + D +W ++ VI+S ++D TV VW++ D
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDG 114
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 12/144 (8%)
Query: 239 QLMIWDLR--TNQTQQRVKAHEKEV--NYLSFNPYNEWVLATASSDTTVALFDMRKMTVP 294
QL IWD R N+ Q + V + + +P + V+AT D ++++D+R+ T+P
Sbjct: 213 QLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMP 272
Query: 295 LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFS 354
+ +L +H E+++V + P++ L + ++D L WD + E+ L + G S
Sbjct: 273 VSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDASTDVPEKSSLFHQGGRSSTFLS 332
Query: 355 HG------GHKAKISDFSWNKNDP 372
H H++ IS SW DP
Sbjct: 333 HSISNQANVHQSVIS--SWLSTDP 354
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ-QRVKAHEKEVNYLSFNPYNEWVLATASS 279
V H +++ + G D L IWD+R +KAHE E+ + F+P N L T S
Sbjct: 242 VDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSE 301
Query: 280 DTTV 283
D ++
Sbjct: 302 DGSL 305
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 176 PFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG 235
P ++ + +G D + +WDV + + +AHE+ + +V +H N +
Sbjct: 246 PNQQHVVATGGQDGMLSIWDVRQGTM-----PVSLLKAHEAEMWEVHFHPSNPEHLFTCS 300
Query: 236 DDCQLMIWDLRTNQTQQRVKAHE--KEVNYLSFNPYNE 271
+D L WD T+ ++ H+ + +LS + N+
Sbjct: 301 EDGSLWHWDASTDVPEKSSLFHQGGRSSTFLSHSISNQ 338
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 95/217 (43%), Gaps = 28/217 (12%)
Query: 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219
L +K H+ E ++S + ++ + S D K+ +W+ + +H Y+ H V
Sbjct: 657 LEIKAHEDEVLCCAFST-DDRFIATCSVDKKVKIWN------SMTGELVHTYDEHSEQVN 709
Query: 220 DVSWHLKNEN---LFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLAT 276
H N + L + DC L +WDL + + + H VN+ F+P ++ +LA+
Sbjct: 710 --CCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDKLLAS 766
Query: 277 ASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDP--NHETVLAS---SADDRRLMVWD 331
S+D T+ L+D T S + ++ F DP + E ++ SAD R+MV
Sbjct: 767 CSADGTLKLWD---ATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAA 823
Query: 332 LNRIGDEQLELDAEDGPPELLFSHGGHKAKI--SDFS 366
N+I + G H GH + I DFS
Sbjct: 824 KNKIFLFDIHTSGLLGEI-----HTGHHSTIQYCDFS 855
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 20/167 (11%)
Query: 231 FGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRK 290
S G D L ++ T + +KAHE EV +F+ + ++ AT S D V +++
Sbjct: 636 IASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFI-ATCSVDKKVKIWN--S 692
Query: 291 MTVPL-HILSSHTEEVFQVEW-DPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGP 348
MT L H H+E+V + + +H +LA+ + D L +WDLN+
Sbjct: 693 MTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQ-------------- 738
Query: 349 PELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395
E + GH ++ ++ +D +++S + D T+++W T + R
Sbjct: 739 KECRNTMFGHTNSVNHCRFSPDDK-LLASCSADGTLKLWDATSANER 784
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 104/234 (44%), Gaps = 47/234 (20%)
Query: 163 KGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMH----VYEAHESVV 218
+GH +G+ +SP +L S S D I LW+ + ++ + V++ +E +V
Sbjct: 885 RGHLSWVHGVMFSPDGSSFLTS-SDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMV 943
Query: 219 EDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS 278
V H++ +L + + RT Q +A +V+ +P+ +++ A
Sbjct: 944 LAVD-HIR------------RLQLINGRTGQIDYLTEA---QVSCCCLSPHLQYI-AFGD 986
Query: 279 SDTTVALFDMRKMTVPLHILSS---HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI 335
+ + + ++ V I S H + V+ +++ + +T L SS+DD + VW+
Sbjct: 987 ENGAIEILEL----VNNRIFQSRFQHKKTVWHIQFTADEKT-LISSSDDAEIQVWN---- 1037
Query: 336 GDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
+LD + +F GH+ + DF KN + S + D TV+VW +
Sbjct: 1038 ----WQLD------KCIFLR-GHQETVKDFRLLKNSRLL--SWSFDGTVKVWNI 1078
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 80/186 (43%), Gaps = 39/186 (20%)
Query: 127 KPNLVGTKTSSCE----VYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSP------ 176
+PN GT +SC V V+ A + +C +LR H E +SW+P
Sbjct: 241 RPNQDGTLIASCSNDQTVRVWVVATK------ECKAELREHRHVVEC--ISWAPESSYSS 292
Query: 177 ---------FKEG----YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSW 223
K G +L+SGS D I +WDVS + H++ V V +
Sbjct: 293 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM------CLMTLVGHDNWVRGVLF 346
Query: 224 HLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTV 283
H + + S DD L +WD + + + + AHE V L F+ +V+ T S D TV
Sbjct: 347 HSGGKFIL-SCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV-TGSVDQTV 404
Query: 284 ALFDMR 289
+++ R
Sbjct: 405 KVWECR 410
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 85/179 (47%), Gaps = 19/179 (10%)
Query: 209 HVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268
+ H S V V +H ++ SA +D + +WD T ++ +K H V +SF+
Sbjct: 102 YALSGHRSPVTRVIFH-PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 160
Query: 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLM 328
+ +LA+ S+D T+ L+D + + + H V V PN + ++++S D+ +
Sbjct: 161 SGK-LLASCSADMTIKLWDFQGFEC-IRTMHGHDHNVSSVSIMPNGDHIVSASR-DKTIK 217
Query: 329 VWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
+W++ + G F+ GH+ + N+ D +I+S ++D TV+VW
Sbjct: 218 MWEV------------QTGYCVKTFT--GHREWVRMVRPNQ-DGTLIASCSNDQTVRVW 261
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/246 (21%), Positives = 98/246 (39%), Gaps = 44/246 (17%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
+ GHD +S P + ++VS S D I +W+V + + H V V
Sbjct: 188 MHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGY------CVKTFTGHREWVRMV 240
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEW--------- 272
+ ++ L S +D + +W + T + + ++ H V +S+ P + +
Sbjct: 241 RPN-QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS 299
Query: 273 ----------VLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSA 322
L + S D T+ ++D+ + L L H V V + + +L S A
Sbjct: 300 ETKKSGKPGPFLLSGSRDKTIKMWDV-STGMCLMTLVGHDNWVRGVLFHSGGKFIL-SCA 357
Query: 323 DDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDN 382
DD+ L VWD + + H+ ++ ++K P+V++ D
Sbjct: 358 DDKTLRVWDYKN--------------KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV-DQ 402
Query: 383 TVQVWQ 388
TV+VW+
Sbjct: 403 TVKVWE 408
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 97/213 (45%), Gaps = 24/213 (11%)
Query: 178 KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD 237
++ +++ GS D +I +++ + +KV+D +EAH + ++ H + S DD
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNT--GEKVVD----FEAHPDYIRSIAVHPTKPYVL-SGSDD 118
Query: 238 CQLMIWDLRTN-QTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLH 296
+ +W+ N +Q + HE V ++FNP + A+ D TV ++ + + T
Sbjct: 119 LTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT 178
Query: 297 ILSSHTEEVFQVEWDP-NHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH 355
+ + V V++ P + + +++DD + +WD + +
Sbjct: 179 LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT--------------KSCVATL 224
Query: 356 GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388
GH + +S ++ P +IS ++D T+++W
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISG-SEDGTLKIWN 256
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/127 (19%), Positives = 55/127 (43%), Gaps = 7/127 (5%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
+GH+ ++++P SG D + +W + + + E V V
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT-----GQERGVNYV 190
Query: 222 SWH-LKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD 280
++ L ++ +A DD + IWD +T ++ H V++ F+P ++ + S D
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSED 249
Query: 281 TTVALFD 287
T+ +++
Sbjct: 250 GTLKIWN 256
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/155 (20%), Positives = 60/155 (38%), Gaps = 18/155 (11%)
Query: 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHIL 298
++ +W+ T + ++ E V F W++ S D + +F+ +
Sbjct: 36 RVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIV-GSDDFRIRVFNYNTGEKVVD-F 93
Query: 299 SSHTEEVFQVEWDPNHETVLASSAD-DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG 357
+H + + + P VL+ S D +L W+ N ++ E G
Sbjct: 94 EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE---------------G 138
Query: 358 HKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392
H+ + ++N DP +S D TV+VW + S
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 97/213 (45%), Gaps = 24/213 (11%)
Query: 178 KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD 237
++ +++ GS D +I +++ + +KV+D +EAH + ++ H + S DD
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNT--GEKVVD----FEAHPDYIRSIAVHPTKPYVL-SGSDD 118
Query: 238 CQLMIWDLRTN-QTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLH 296
+ +W+ N +Q + HE V ++FNP + A+ D TV ++ + + T
Sbjct: 119 LTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT 178
Query: 297 ILSSHTEEVFQVEWDP-NHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH 355
+ + V V++ P + + +++DD + +WD + +
Sbjct: 179 LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT--------------KSCVATL 224
Query: 356 GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388
GH + +S ++ P +IS ++D T+++W
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISG-SEDGTLKIWN 256
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/127 (19%), Positives = 55/127 (43%), Gaps = 7/127 (5%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
+GH+ ++++P SG D + +W + + + E V V
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT-----GQERGVNYV 190
Query: 222 SWH-LKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD 280
++ L ++ +A DD + IWD +T ++ H V++ F+P ++ + S D
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSED 249
Query: 281 TTVALFD 287
T+ +++
Sbjct: 250 GTLKIWN 256
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/155 (20%), Positives = 60/155 (38%), Gaps = 18/155 (11%)
Query: 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHIL 298
++ +W+ T + ++ E V F W++ S D + +F+ +
Sbjct: 36 RVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIV-GSDDFRIRVFNYNTGEKVVD-F 93
Query: 299 SSHTEEVFQVEWDPNHETVLASSAD-DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG 357
+H + + + P VL+ S D +L W+ N ++ E G
Sbjct: 94 EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE---------------G 138
Query: 358 HKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392
H+ + ++N DP +S D TV+VW + S
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 96/217 (44%), Gaps = 27/217 (12%)
Query: 182 LVSGSHDNKICLWDVSALAQDKVID-AMHVYEAHESVVEDVSWHLKNENLFGSAGD-DCQ 239
+VS S D I LW ++ DK A H VEDV L ++ F +G D +
Sbjct: 398 IVSASRDKSIILWKLTK--DDKAYGVAQRRLTGHSHFVEDVV--LSSDGQFALSGSWDGE 453
Query: 240 LMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMR---KMTVPLH 296
L +WDL + +R H K+V ++F+ N ++ +AS D T+ L++ K T+
Sbjct: 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIV-SASRDRTIKLWNTLGECKYTIS-E 511
Query: 297 ILSSHTEEVFQVEWDPNH-ETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH 355
H + V V + PN + + S++ D+ + VW+L+ +L +
Sbjct: 512 GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC--------------KLRSTL 557
Query: 356 GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392
GH +S + + D + +S D V +W + +
Sbjct: 558 AGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEG 593
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 91/191 (47%), Gaps = 22/191 (11%)
Query: 212 EAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ-----TQQRVKAHEKEVNYLSF 266
AH +V ++ + N ++ SA D +++W L + Q+R+ H V +
Sbjct: 379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVL 438
Query: 267 NPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRR 326
+ ++ L + S D + L+D+ V HT++V V + ++ ++ S++ DR
Sbjct: 439 SSDGQFAL-SGSWDGELRLWDL-AAGVSTRRFVGHTKDVLSVAFSLDNRQIV-SASRDRT 495
Query: 327 LMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKIS--DFSWNKNDPWVISSVADDNTV 384
+ +W N +G+ + + +E G GH+ +S FS N P ++S+ + D TV
Sbjct: 496 IKLW--NTLGECKYTI-SEGGE--------GHRDWVSCVRFSPNTLQPTIVSA-SWDKTV 543
Query: 385 QVWQMTDSIYR 395
+VW +++ R
Sbjct: 544 KVWNLSNCKLR 554
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 80/178 (44%), Gaps = 14/178 (7%)
Query: 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQL 240
+ +SGS D ++ LWD++A + + H V V++ L N + SA D +
Sbjct: 444 FALSGSWDGELRLWDLAAGVSTR------RFVGHTKDVLSVAFSLDNRQIV-SASRDRTI 496
Query: 241 MIWDLRTN---QTQQRVKAHEKEVNYLSFNPYN-EWVLATASSDTTVALFDMRKMTVPLH 296
+W+ + + H V+ + F+P + + +AS D TV ++++ +
Sbjct: 497 KLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR-S 555
Query: 297 ILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFS 354
L+ HT V V P+ ++ AS D +++WDL G + L+A L FS
Sbjct: 556 TLAGHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAE-GKKLYSLEANSVIHALCFS 611
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 212 EAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNE 271
E H + V DV+ N N SA D L +W+L+ Q Q + H K+V ++F+P N
Sbjct: 64 EGHSAFVSDVALS-NNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 272 WVLATASSDTTVALFDMRKMTVPLHILS--SHTEEVFQVEWDPNHET-VLASSADDRRLM 328
++ + D + +++++ +H LS +HT+ V V + P+ + V+ S D +
Sbjct: 123 QIV-SGGRDNALRVWNVKGEC--MHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVK 179
Query: 329 VWDL 332
VWDL
Sbjct: 180 VWDL 183
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 101/238 (42%), Gaps = 30/238 (12%)
Query: 161 RLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYE--AHESVV 218
+ GH K+ +++SP +VSG DN + +W+V + MH AH V
Sbjct: 104 KFLGHTKDVLSVAFSPDNR-QIVSGGRDNALRVWNVKG-------ECMHTLSRGAHTDWV 155
Query: 219 EDVSWHLK-NENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATA 277
V + + + S G D + +WDL T + +K H V ++ +P + A++
Sbjct: 156 SCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGS-LCASS 214
Query: 278 SSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGD 337
D L+D+ K + + + Q+ + PN + A++ R+
Sbjct: 215 DKDGVARLWDLTKGEALSEMAAG--APINQICFSPNRYWMCAATEKGIRI---------- 262
Query: 338 EQLELDAEDGPPELLFSHGGHKAKISD---FSWNKNDPWVISSVADDNTVQVWQMTDS 392
+L+ +D EL H G K + + +W+ D + S DN ++VW ++++
Sbjct: 263 --FDLENKDIIVELAPEHQGSKKIVPECVSIAWSA-DGSTLYSGYTDNVIRVWGVSEN 317
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 97/213 (45%), Gaps = 24/213 (11%)
Query: 178 KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD 237
++ +++ GS D +I +++ + +KV+D +EAH + ++ H + S DD
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNT--GEKVVD----FEAHPDYIRSIAVHPTKPYVL-SGSDD 118
Query: 238 CQLMIWDLRTN-QTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLH 296
+ +W+ N +Q + HE V ++FNP + A+ D TV ++ + + T
Sbjct: 119 LTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT 178
Query: 297 ILSSHTEEVFQVEWDP-NHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH 355
+ + V V++ P + + +++DD + +WD + +
Sbjct: 179 LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ--------------TKSCVATL 224
Query: 356 GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388
GH + +S ++ P +IS ++D T+++W
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISG-SEDGTLKIWN 256
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 79/205 (38%), Gaps = 15/205 (7%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
+GH+ ++++P SG D + +W + + + E V V
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT-----GQERGVNYV 190
Query: 222 SWH-LKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD 280
++ L ++ +A DD + IWD +T ++ H V++ F+P ++ + S D
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSED 249
Query: 281 TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE-Q 339
T+ +++ V L+ E + + P +S D V L DE
Sbjct: 250 GTLKIWNSSTYKVE-KTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN--DEPT 306
Query: 340 LELDAEDGPPELLFSHGGHKAKISD 364
L LD P L GG A SD
Sbjct: 307 LSLD----PVGKLVWSGGKNAAASD 327
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 31/155 (20%), Positives = 60/155 (38%), Gaps = 18/155 (11%)
Query: 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHIL 298
++ +W+ T + ++ E V F W++ S D + +F+ +
Sbjct: 36 RVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIV-GSDDFRIRVFNYNTGEKVVD-F 93
Query: 299 SSHTEEVFQVEWDPNHETVLASSAD-DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG 357
+H + + + P VL+ S D +L W+ N ++ E G
Sbjct: 94 EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE---------------G 138
Query: 358 HKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392
H+ + ++N DP +S D TV+VW + S
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 20/133 (15%)
Query: 241 MIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT-VPLHILS 299
M+ + T T H+ +++Y LAT SSD +V +FD+R + + L
Sbjct: 1 MVSVINTVDTSHEDMIHDAQMDYYGTR------LATCSSDRSVKIFDVRNGGQILIADLR 54
Query: 300 SHTEEVFQVEW-DPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH 358
H V+QV W P + +LAS + DR++++W E+G E H GH
Sbjct: 55 GHEGPVWQVAWAHPMYGNILASCSYDRKVIIW------------REENGTWEKSHEHAGH 102
Query: 359 KAKISDFSWNKND 371
+ ++ W +D
Sbjct: 103 DSSVNSVCWAPHD 115
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 11/163 (6%)
Query: 230 LFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMR 289
+ +D + IWD+ + ++ HE+++ L + P + L + S D TV ++D+R
Sbjct: 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLR 195
Query: 290 KMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349
L + S + V V P +A+ + DR + VWD + G LD+E+
Sbjct: 196 TGQCSLTL--SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD-SETGFLVERLDSENE-- 250
Query: 350 ELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392
S GHK + + ++ V+S + D +V++W + ++
Sbjct: 251 ----SGTGHKDSVYSVVFTRDGQSVVSG-SLDRSVKLWNLQNA 288
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/232 (19%), Positives = 88/232 (37%), Gaps = 61/232 (26%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L+GH+++ Y L + P + LVSGS D + +WD
Sbjct: 161 LQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWD-------------------------- 193
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT 281
LRT Q + E V ++ +P + +A S D
Sbjct: 194 -----------------------LRTGQCSLTLSI-EDGVTTVAVSPGDGKYIAAGSLDR 229
Query: 282 TVALFD------MRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI 335
V ++D + ++ + H + V+ V + + ++V++ S DR + +W+L
Sbjct: 230 AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL-DRSVKLWNLQNA 288
Query: 336 GDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
++ G E+ + GHK + + +ND +++S + D V W
Sbjct: 289 NNKSDSKTPNSGTCEVTYI--GHKDFVLSVATTQNDEYILSG-SKDRGVLFW 337
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 105/224 (46%), Gaps = 30/224 (13%)
Query: 177 FKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD 236
F +G L +GS D KI L VS D + + AH+ + V+W + +L +
Sbjct: 22 FSQGILATGSTDRKIKL--VSVKYDDFTLIDVLDETAHKKAIRSVAWR-PHTSLLAAGSF 78
Query: 237 DCQLMIW--DLRTNQTQQR-----VKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMR 289
D + IW + ++T + ++ HE EV ++++ + + LAT S D +V +++
Sbjct: 79 DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETD 137
Query: 290 KMTVP---LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED 346
+ + +L H+++V V W P+ E +LASS+ D + +W D
Sbjct: 138 ESGEEYECISVLQEHSQDVKHVIWHPS-EALLASSSYDDTVRIW------------KDYD 184
Query: 347 GPPELLFSHGGHKAKI--SDFSWNKNDPWVISSVADDNTVQVWQ 388
E + GH+ + SDF + + S +DD+TV+VW+
Sbjct: 185 DDWECVAVLNGHEGTVWSSDFD-KTEGVFRLCSGSDDSTVRVWK 227
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 65/127 (51%), Gaps = 12/127 (9%)
Query: 269 YNEWVLATASSDTTVALFDMRKMTVPL-HIL--SSHTEEVFQVEWDPNHETVLASSADDR 325
+++ +LAT S+D + L ++ L +L ++H + + V W P H ++LA+ + D
Sbjct: 22 FSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP-HTSLLAAGSFDS 80
Query: 326 RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQ 385
+ +W D E+D LL GH+ ++ +W+ ND + +++ + D +V
Sbjct: 81 TVSIWAKEESADRTFEMD-------LLAIIEGHENEVKGVAWS-NDGYYLATCSRDKSVW 132
Query: 386 VWQMTDS 392
+W+ +S
Sbjct: 133 IWETDES 139
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 102/241 (42%), Gaps = 30/241 (12%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
++GH+ E G++WS +G YL + S D + +W+ ++ + + V + H V+
Sbjct: 103 IEGHENEVKGVAWS--NDGYYLATCSRDKSVWIWETDESGEE--YECISVLQEHSQDVKH 158
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRTN--QTQQRVKAHEKEVNYLSFNPY-NEWVLATA 277
V WH +E L S+ D + IW + + + HE V F+ + L +
Sbjct: 159 VIWH-PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSG 217
Query: 278 SSDTTVALF--------DMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMV 329
S D+TV ++ D ++ + H +V+ V W N ++AS D L V
Sbjct: 218 SDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN--GLIASVGADGVLAV 275
Query: 330 WDLNRIGDEQLELDAE-DGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388
++ E+D E + HG ++ + + N ++++ DD V W
Sbjct: 276 YE---------EVDGEWKVFAKRALCHGVYEINVVKWL-ELNGKTILATGGDDGIVNFWS 325
Query: 389 M 389
+
Sbjct: 326 L 326
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 23/188 (12%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L+ H ++ + W P E L S S+D+ + +W D + + V HE V
Sbjct: 149 LQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWK----DYDDDWECVAVLNGHEGTVWSS 203
Query: 222 SWHLKNENLF--GSAGDDCQLMIW----DLRTNQTQQRVKA-----HEKEVNYLSFNPYN 270
+ K E +F S DD + +W D +Q + +A H+++V +++ +N
Sbjct: 204 DFD-KTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWG-FN 261
Query: 271 EWVLATASSDTTVALF---DMRKMTVPLHILSSHTEEVFQVEW-DPNHETVLASSADDRR 326
++A+ +D +A++ D L E+ V+W + N +T+LA+ DD
Sbjct: 262 G-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGI 320
Query: 327 LMVWDLNR 334
+ W L +
Sbjct: 321 VNFWSLEK 328
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 52/128 (40%), Gaps = 10/128 (7%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L GH GY + +V+ S D LWD+ + + H V +
Sbjct: 150 LAGH--TGYLSCCRFLDDNQIVTSSGDTTCALWDI------ETGQQTTTFTGHTGDVMSL 201
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT 281
S + LF S D +WD+R +Q HE ++N + F P N AT S D
Sbjct: 202 SLA-PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDA 259
Query: 282 TVALFDMR 289
T LFD+R
Sbjct: 260 TCRLFDLR 267
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 98/230 (42%), Gaps = 27/230 (11%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L+GH + Y + W LVS S D K+ +WD + +KV H S V
Sbjct: 62 LRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWD--SYTTNKV----HAIPLRSSWVMTC 114
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKEVNYLSFNPY-NEWVLATASS 279
++ + N G D I++L+T + RV + YLS + ++ + T+S
Sbjct: 115 AYA-PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 173
Query: 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339
DTT AL+D+ + + HT +V + P+ + S A D +WD+
Sbjct: 174 DTTCALWDI-ETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDV------- 224
Query: 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
+G F+ GH++ I+ + N ++ +DD T +++ +
Sbjct: 225 -----REGMCRQTFT--GHESDINAICFFPNGN-AFATGSDDATCRLFDL 266
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 12/114 (10%)
Query: 165 HDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWH 224
H + LS +P VSG+ D LWDV + + HES + + +
Sbjct: 194 HTGDVMSLSLAPDTR-LFVSGACDASAKLWDV------REGMCRQTFTGHESDINAICF- 245
Query: 225 LKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEK---EVNYLSFNPYNEWVLA 275
N N F + DD ++DLR +Q + +H+ + +SF+ +LA
Sbjct: 246 FPNGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNIICGITSVSFSKSGRLLLA 298
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 97/213 (45%), Gaps = 24/213 (11%)
Query: 178 KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD 237
++ +++ GS D +I +++ + +KV+D +EAH + ++ H + S DD
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNT--GEKVVD----FEAHPDYIRSIAVHPTKPYVL-SGSDD 118
Query: 238 CQLMIWDLRTN-QTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLH 296
+ +W+ N +Q + HE V ++FNP + A+ D TV ++ + + T
Sbjct: 119 LTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT 178
Query: 297 ILSSHTEEVFQVEWDP-NHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH 355
+ + V V++ P + + +++DD + +WD + +
Sbjct: 179 LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ--------------TKSCVATL 224
Query: 356 GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388
GH + +S ++ P +IS ++D T+++W
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISG-SEDGTLKIWN 256
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 79/205 (38%), Gaps = 15/205 (7%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
+GH+ ++++P SG D + +W + + + E V V
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT-----GQERGVNYV 190
Query: 222 SWH-LKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD 280
++ L ++ +A DD + IWD +T ++ H V++ F+P ++ + S D
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSED 249
Query: 281 TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE-Q 339
T+ +++ V L+ E + + P +S D V L DE
Sbjct: 250 GTLKIWNSSTYKVE-KTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN--DEPT 306
Query: 340 LELDAEDGPPELLFSHGGHKAKISD 364
L LD P L GG A SD
Sbjct: 307 LSLD----PVGKLVWSGGKNAAASD 327
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 60/155 (38%), Gaps = 18/155 (11%)
Query: 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHIL 298
++ IW+ T + ++ E V F W++ S D + +F+ +
Sbjct: 36 RVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIV-GSDDFRIRVFNYNTGEKVVD-F 93
Query: 299 SSHTEEVFQVEWDPNHETVLASSAD-DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG 357
+H + + + P VL+ S D +L W+ N ++ E G
Sbjct: 94 EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE---------------G 138
Query: 358 HKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392
H+ + ++N DP +S D TV+VW + S
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 52/128 (40%), Gaps = 10/128 (7%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L GH GY + +V+ S D LWD+ + + H V +
Sbjct: 139 LAGH--TGYLSCCRFLDDNQIVTSSGDTTCALWDI------ETGQQTTTFTGHTGDVMSL 190
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT 281
S + LF S D +WD+R +Q HE ++N + F P N AT S D
Sbjct: 191 SLA-PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDA 248
Query: 282 TVALFDMR 289
T LFD+R
Sbjct: 249 TCRLFDLR 256
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 98/230 (42%), Gaps = 27/230 (11%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L+GH + Y + W LVS S D K+ +WD + +KV H S V
Sbjct: 51 LRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWD--SYTTNKV----HAIPLRSSWVMTC 103
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKEVNYLSFNPY-NEWVLATASS 279
++ + N G D I++L+T + RV + YLS + ++ + T+S
Sbjct: 104 AYA-PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339
DTT AL+D+ + + HT +V + P+ + S A D +WD+
Sbjct: 163 DTTCALWDI-ETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDV------- 213
Query: 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
+G F+ GH++ I+ + N ++ +DD T +++ +
Sbjct: 214 -----REGMCRQTFT--GHESDINAICFFPNGN-AFATGSDDATCRLFDL 255
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 12/114 (10%)
Query: 165 HDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWH 224
H + LS +P VSG+ D LWDV + + HES + + +
Sbjct: 183 HTGDVMSLSLAPDTR-LFVSGACDASAKLWDV------REGMCRQTFTGHESDINAICF- 234
Query: 225 LKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEK---EVNYLSFNPYNEWVLA 275
N N F + DD ++DLR +Q + +H+ + +SF+ +LA
Sbjct: 235 FPNGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNIICGITSVSFSKSGRLLLA 287
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 52/128 (40%), Gaps = 10/128 (7%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L GH GY + +V+ S D LWD+ + + H V +
Sbjct: 139 LAGH--TGYLSCCRFLDDNQIVTSSGDTTCALWDI------ETGQQTTTFTGHTGDVMSL 190
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT 281
S + LF S D +WD+R +Q HE ++N + F P N AT S D
Sbjct: 191 SLA-PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDA 248
Query: 282 TVALFDMR 289
T LFD+R
Sbjct: 249 TCRLFDLR 256
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 98/230 (42%), Gaps = 27/230 (11%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L+GH + Y + W L+S S D K+ +WD + +KV H S V
Sbjct: 51 LRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWD--SYTTNKV----HAIPLRSSWVMTC 103
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKEVNYLSFNPY-NEWVLATASS 279
++ + N G D I++L+T + RV + YLS + ++ + T+S
Sbjct: 104 AYA-PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339
DTT AL+D+ + + HT +V + P+ + S A D +WD+
Sbjct: 163 DTTCALWDI-ETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDV------- 213
Query: 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
+G F+ GH++ I+ + N ++ +DD T +++ +
Sbjct: 214 -----REGMCRQTFT--GHESDINAICFFPNGN-AFATGSDDATCRLFDL 255
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 12/114 (10%)
Query: 165 HDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWH 224
H + LS +P VSG+ D LWDV + + HES + + +
Sbjct: 183 HTGDVMSLSLAPDTR-LFVSGACDASAKLWDV------REGMCRQTFTGHESDINAICF- 234
Query: 225 LKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEK---EVNYLSFNPYNEWVLA 275
N N F + DD ++DLR +Q + +H+ + +SF+ +LA
Sbjct: 235 FPNGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNIICGITSVSFSKSGRLLLA 287
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 52/128 (40%), Gaps = 10/128 (7%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L GH GY + +V+ S D LWD+ + + H V +
Sbjct: 139 LAGH--TGYLSCCRFLDDNQIVTSSGDTTCALWDI------ETGQQTTTFTGHTGDVMSL 190
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT 281
S + LF S D +WD+R +Q HE ++N + F P N AT S D
Sbjct: 191 SLA-PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDA 248
Query: 282 TVALFDMR 289
T LFD+R
Sbjct: 249 TCRLFDLR 256
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 98/230 (42%), Gaps = 27/230 (11%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L+GH + Y + W LVS S D K+ +WD + +KV H S V
Sbjct: 51 LRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWD--SYTTNKV----HAIPLRSSWVMTC 103
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKEVNYLSFNPY-NEWVLATASS 279
++ + N G D I++L+T + RV + YLS + ++ + T+S
Sbjct: 104 AYA-PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339
DTT AL+D+ + + HT +V + P+ + S A D +WD+
Sbjct: 163 DTTCALWDI-ETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDV------- 213
Query: 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
+G F+ GH++ I+ + N ++ +DD T +++ +
Sbjct: 214 -----REGMCRQTFT--GHESDINAICFFPNGN-AFATGSDDATCRLFDL 255
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 12/114 (10%)
Query: 165 HDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWH 224
H + LS +P VSG+ D LWDV + + HES + + +
Sbjct: 183 HTGDVMSLSLAPDTR-LFVSGACDASAKLWDV------REGMCRQTFTGHESDINAICF- 234
Query: 225 LKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEK---EVNYLSFNPYNEWVLA 275
N N F + DD ++DLR +Q + +H+ + +SF+ +LA
Sbjct: 235 FPNGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNIICGITSVSFSKSGRLLLA 287
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 52/128 (40%), Gaps = 10/128 (7%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L GH GY + +V+ S D LWD+ + + H V +
Sbjct: 139 LAGH--TGYLSCCRFLDDNQIVTSSGDTTCALWDI------ETGQQTTTFTGHTGDVMSL 190
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT 281
S + LF S D +WD+R +Q HE ++N + F P N AT S D
Sbjct: 191 SLA-PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDA 248
Query: 282 TVALFDMR 289
T LFD+R
Sbjct: 249 TCRLFDLR 256
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 98/230 (42%), Gaps = 27/230 (11%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L+GH + Y + W L+S S D K+ +WD + +KV H S V
Sbjct: 51 LRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWD--SYTTNKV----HAIPLRSSWVMTC 103
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKEVNYLSFNPY-NEWVLATASS 279
++ + N G D I++L+T + RV + YLS + ++ + T+S
Sbjct: 104 AYA-PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339
DTT AL+D+ + + HT +V + P+ + S A D +WD+
Sbjct: 163 DTTCALWDI-ETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDV------- 213
Query: 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
+G F+ GH++ I+ + N ++ +DD T +++ +
Sbjct: 214 -----REGMCRQTFT--GHESDINAICFFPNGN-AFATGSDDATCRLFDL 255
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 12/114 (10%)
Query: 165 HDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWH 224
H + LS +P VSG+ D LWDV + + HES + + +
Sbjct: 183 HTGDVMSLSLAPDTR-LFVSGACDASAKLWDV------REGMCRQTFTGHESDINAICF- 234
Query: 225 LKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEK---EVNYLSFNPYNEWVLA 275
N N F + DD ++DLR +Q + +H+ + +SF+ +LA
Sbjct: 235 FPNGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNIICGITSVSFSKSGRLLLA 287
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 6/166 (3%)
Query: 163 KGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVS 222
+ H + ++ SP K+ +S S DN+I LWD I A + ++
Sbjct: 166 RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC----SAPGYLPTSLA 221
Query: 223 WHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTT 282
WH + +F ++ + + D ++ H + V L F+P++ LA+ S D +
Sbjct: 222 WHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS 281
Query: 283 VALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLM 328
+A+ D L +H + V W P + ++L + D +++
Sbjct: 282 LAVLDSSLSE--LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVV 325
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 178 KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD 237
+ G LV+ S + LW++ + ++ YE H+ +V VS + D
Sbjct: 93 ERGILVA-SDSGAVELWELDE-NETLIVSKFCKYE-HDDIVSTVSVLSSGTQAVSGSKDI 149
Query: 238 CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMR 289
C + +WDL +AH +V ++ +P+ + V + S D + L+D R
Sbjct: 150 C-IKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR 200
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 8/121 (6%)
Query: 215 ESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK----AHEKEVNYLSFNPYN 270
E+ V D++W E A D + +W+L N+T K H+ V+ +S
Sbjct: 82 EAGVADLTW--VGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG 139
Query: 271 EWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVW 330
+ + S D + ++D+ + V L +H +V V P+ ++V S ++D R+++W
Sbjct: 140 TQAV-SGSKDICIKVWDLAQQVV-LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLW 197
Query: 331 D 331
D
Sbjct: 198 D 198
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 254 VKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS--HTEEVFQVEWD 311
++ H+K+V +++ NP +W LATAS D TV ++D+R++ L S H V +
Sbjct: 247 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFS 306
Query: 312 PNHETVLAS 320
P+ +L +
Sbjct: 307 PDGARLLTT 315
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 69/171 (40%), Gaps = 17/171 (9%)
Query: 221 VSWHLKNENLF--GSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS 278
++WH + + GS G D L + ++ T + + L FNP N +S
Sbjct: 126 LAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASS 185
Query: 279 SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE 338
+ T L D + + + SS T ++ D + + + + D+ ++ LN G E
Sbjct: 186 MEGTTRLQDFKGNILRV-FASSDTINIWFCSLDVSASSRMVVTGDNVGNVIL-LNMDGKE 243
Query: 339 QLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
L HK K++ + N W +++ + D TV++W +
Sbjct: 244 LWNLRM-------------HKKKVTHVALNPCCDWFLATASVDQTVKIWDL 281
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 254 VKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS--HTEEVFQVEWD 311
++ H+K+V +++ NP +W LATAS D TV ++D+R++ L S H V +
Sbjct: 246 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFS 305
Query: 312 PNHETVLAS 320
P+ +L +
Sbjct: 306 PDGARLLTT 314
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 73/171 (42%), Gaps = 17/171 (9%)
Query: 221 VSWHLKNENLF--GSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS 278
++WH + + GS G D L + ++ T + + L FNP N +S
Sbjct: 125 LAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASS 184
Query: 279 SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE 338
+ T L D + + + SS T ++ D V ASS R++V N
Sbjct: 185 MEGTTRLQDFKGNILRV-FASSDTINIWFCSLD-----VSASS----RMVVTGDNVGNVI 234
Query: 339 QLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
L +D ++ L++ HK K++ + N W +++ + D TV++W +
Sbjct: 235 LLNMDGKE-----LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDL 280
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 254 VKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS--HTEEVFQVEWD 311
++ H+K+V +++ NP +W LATAS D TV ++D+R++ L S H V +
Sbjct: 246 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFS 305
Query: 312 PNHETVLAS 320
P+ +L +
Sbjct: 306 PDGARLLTT 314
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 73/171 (42%), Gaps = 17/171 (9%)
Query: 221 VSWHLKNENLF--GSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS 278
++WH + + GS G D L + ++ T + + L FNP N +S
Sbjct: 125 LAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASS 184
Query: 279 SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE 338
+ T L D + + + SS T ++ D V ASS R++V N
Sbjct: 185 MEGTTRLQDFKGNILRV-FASSDTINIWFCSLD-----VSASS----RMVVTGDNVGNVI 234
Query: 339 QLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
L +D ++ L++ HK K++ + N W +++ + D TV++W +
Sbjct: 235 LLNMDGKE-----LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDL 280
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/214 (18%), Positives = 89/214 (41%), Gaps = 23/214 (10%)
Query: 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESV----VEDVSWHLKNENLFGSA-G 235
Y SG + +WD + H+ + V V+D+SW +++ + G
Sbjct: 73 YCASGDVHGNVRIWDTT--------QTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEG 124
Query: 236 DDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPL 295
+ ++ T + + + +N + F P + + + S D TVA+F+
Sbjct: 125 RERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK- 183
Query: 296 HILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH 355
HT+ V V ++P+ ++ AS+ D ++++ N + + + +D +
Sbjct: 184 STFGEHTKFVHSVRYNPD-GSLFASTGGDGTIVLY--NGVDGTKTGVFEDDSLKNV---- 236
Query: 356 GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
H + +W+ D I+S + D T+++W +
Sbjct: 237 -AHSGSVFGLTWSP-DGTKIASASADKTIKIWNV 268
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 58/129 (44%), Gaps = 24/129 (18%)
Query: 225 LKNENLF-GSAGDDCQLMIWDLR-TNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTT 282
L N+ F G D ++ ++ L + ++ + H E+ ++F+ +++AT
Sbjct: 456 LSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVAT------ 509
Query: 283 VALFDMRKMTVPLHILSS-----------HTEEVFQVEWDPNHETVLASSADDRRLMVWD 331
D + +P + ++ HT +V V W P++ LA+ + D ++VW+
Sbjct: 510 ----DQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDN-VRLATGSLDNSVIVWN 564
Query: 332 LNRIGDEQL 340
+N+ D +
Sbjct: 565 MNKPSDHPI 573
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 172 LSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHE-SVVEDVSWHLKNENL 230
+SWSP L +GS DN + +W+++ + +I + AH S V V W NE
Sbjct: 542 VSWSP-DNVRLATGSLDNSVIVWNMNKPSDHPII----IKGAHAMSSVNSVIW--LNETT 594
Query: 231 FGSAGDDCQLMIWDL 245
SAG D + W++
Sbjct: 595 IVSAGQDSNIKFWNV 609
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 157 DPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVI 205
D L+ H +GL+WSP + S S D I +W+V+ L +K I
Sbjct: 230 DDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKTI 277
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/148 (20%), Positives = 66/148 (44%), Gaps = 17/148 (11%)
Query: 154 DDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEA 213
D + L G + + + P + ++SGS DN + ++ + +
Sbjct: 135 DTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIF------EGPPFKFKSTFGE 188
Query: 214 HESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV--------KAHEKEVNYLS 265
H V V ++ + +LF S G D +++++ + T+ V AH V L+
Sbjct: 189 HTKFVHSVRYN-PDGSLFASTGGDGTIVLYN-GVDGTKTGVFEDDSLKNVAHSGSVFGLT 246
Query: 266 FNPYNEWVLATASSDTTVALFDMRKMTV 293
++P + +A+AS+D T+ ++++ + V
Sbjct: 247 WSP-DGTKIASASADKTIKIWNVATLKV 273
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 14/96 (14%)
Query: 274 LATASSDTTVALFDMRKMTVPL-HILSSHTEEVFQVEW-DPNHETVLASSADDRRLMVWD 331
+AT SSD T+ +F++ T L L+ H V++V+W P T+LAS + D ++M+W
Sbjct: 24 MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW- 82
Query: 332 LNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSW 367
E+G + H H A ++ W
Sbjct: 83 -----------KEENGRWSQIAVHAVHSASVNSVQW 107
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 182 LVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWH--LKNENLFGSAGDDCQ 239
V+G DN + +W ++ AQ V+++ E H V DV+W + + S D
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLES--TLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT 230
Query: 240 LMIW 243
+IW
Sbjct: 231 CIIW 234
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 14/96 (14%)
Query: 274 LATASSDTTVALFDMRKMTVPL-HILSSHTEEVFQVEW-DPNHETVLASSADDRRLMVWD 331
LAT SSD T+ +F++ T L L+ H V++V+W P T+LAS + D ++++W
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW- 82
Query: 332 LNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSW 367
E+G + H H A ++ W
Sbjct: 83 -----------KEENGRWSQIAVHAVHSASVNSVQW 107
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 182 LVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWH--LKNENLFGSAGDDCQ 239
V+G DN + +W ++ AQ V+++ E H V DV+W + + S D
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLES--TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT 230
Query: 240 LMIW 243
+IW
Sbjct: 231 CIIW 234
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 14/96 (14%)
Query: 274 LATASSDTTVALFDMRKMTVPL-HILSSHTEEVFQVEW-DPNHETVLASSADDRRLMVWD 331
LAT SSD T+ +F++ T L L+ H V++V+W P T+LAS + D ++++W
Sbjct: 26 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW- 84
Query: 332 LNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSW 367
E+G + H H A ++ W
Sbjct: 85 -----------KEENGRWSQIAVHAVHSASVNSVQW 109
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 182 LVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWH--LKNENLFGSAGDDCQ 239
V+G DN + +W ++ AQ V+++ E H V DV+W + + S D
Sbjct: 175 FVTGGADNLVKIWKYNSDAQTYVLES--TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT 232
Query: 240 LMIW 243
+IW
Sbjct: 233 CIIW 236
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 14/96 (14%)
Query: 274 LATASSDTTVALFDMRKMTVPL-HILSSHTEEVFQVEW-DPNHETVLASSADDRRLMVWD 331
LAT SSD T+ +F++ T L L+ H V++V+W P T+LAS + D ++++W
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW- 82
Query: 332 LNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSW 367
E+G + H H A ++ W
Sbjct: 83 -----------KEENGRWSQIAVHAVHSASVNSVQW 107
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 182 LVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWH--LKNENLFGSAGDDCQ 239
V+G DN + +W ++ AQ V+++ E H V DV+W + + S D
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLES--TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT 230
Query: 240 LMIW 243
+IW
Sbjct: 231 CIIW 234
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/210 (19%), Positives = 85/210 (40%), Gaps = 19/210 (9%)
Query: 178 KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD 237
++G LV+ S + LW++ L ++ ++ H+ +V+ +S S G D
Sbjct: 105 EKGILVA-SDSGAVELWEI--LEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAV-SGGKD 160
Query: 238 CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHI 297
+ +WDL + AH EVN ++ P + + + D + L+D RK I
Sbjct: 161 FSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI 220
Query: 298 LSSHTEEV-FQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG 356
++ + V W P + A + + + ++ P+ +
Sbjct: 221 DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN--------------PDSAQTSA 266
Query: 357 GHKAKISDFSWNKNDPWVISSVADDNTVQV 386
H I+ +++ + ++S+++D TV V
Sbjct: 267 VHSQNITGLAYSYHSSPFLASISEDCTVAV 296
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 255 KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKM 291
K H+ +V + FNP +W++AT+S D TV L+D+R +
Sbjct: 200 KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNI 236
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 10/133 (7%)
Query: 212 EAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA---HEKEVNYLSFNP 268
+ H++ V ++ + + L ++ D + +WDLR + + A HEK VN FNP
Sbjct: 200 KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNP 259
Query: 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQ------VEWDPNHETVLASSA 322
+ L T + ++ + P I+ H FQ W P ++ ++A
Sbjct: 260 TDSTKLLTTDQRNEIRVYSSYDWSKPDQII-IHPHRQFQHLTPIKATWHPMYDLIVAGRY 318
Query: 323 DDRRLMVWDLNRI 335
D +L++ D I
Sbjct: 319 PDDQLLLNDKRTI 331
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 77/201 (38%), Gaps = 27/201 (13%)
Query: 201 QDKVIDAMHVYEAHESV------VEDVSWHLKNENLF--GSAGDDCQLMIWDLRTNQTQQ 252
Q+ I ++ Y+ H + V + WH + GS G D L +D++ +
Sbjct: 52 QEPFIRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI 111
Query: 253 RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQV--EW 310
+ + + FN +N L +S L D S +VF W
Sbjct: 112 QGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD----------FSGSVIQVFAKTDSW 161
Query: 311 DPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKN 370
D + V S + R+++ GD L +F HKAK++ +N
Sbjct: 162 DYWYCCVDVSVS--RQMLA-----TGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPR 214
Query: 371 DPWVISSVADDNTVQVWQMTD 391
W++++ + D TV++W + +
Sbjct: 215 CDWLMATSSVDATVKLWDLRN 235
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 255 KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKM 291
K H+ +V + FNP +W++AT+S D TV L+D+R +
Sbjct: 201 KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNI 237
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 10/133 (7%)
Query: 212 EAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA---HEKEVNYLSFNP 268
+ H++ V ++ + + L ++ D + +WDLR + + A HEK VN FNP
Sbjct: 201 KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNP 260
Query: 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQ------VEWDPNHETVLASSA 322
+ L T + ++ + P I+ H FQ W P ++ ++A
Sbjct: 261 TDSTKLLTTDQRNEIRVYSSYDWSKPDQII-IHPHRQFQHLTPIKATWHPMYDLIVAGRY 319
Query: 323 DDRRLMVWDLNRI 335
D +L++ D I
Sbjct: 320 PDDQLLLNDKRTI 332
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 77/201 (38%), Gaps = 27/201 (13%)
Query: 201 QDKVIDAMHVYEAHESV------VEDVSWHLKNENLF--GSAGDDCQLMIWDLRTNQTQQ 252
Q+ I ++ Y+ H + V + WH + GS G D L +D++ +
Sbjct: 53 QEPFIRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI 112
Query: 253 RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQV--EW 310
+ + + FN +N L +S L D S +VF W
Sbjct: 113 QGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD----------FSGSVIQVFAKTDSW 162
Query: 311 DPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKN 370
D + V S + R+++ GD L +F HKAK++ +N
Sbjct: 163 DYWYCCVDVSVS--RQMLA-----TGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPR 215
Query: 371 DPWVISSVADDNTVQVWQMTD 391
W++++ + D TV++W + +
Sbjct: 216 CDWLMATSSVDATVKLWDLRN 236
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 92/232 (39%), Gaps = 25/232 (10%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
+ GH LSW+ L SGS I DV +A ++ + H S V +
Sbjct: 172 MAGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVR-IANHQI----GTLQGHSSEVCGL 223
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT 281
+W L S G+D + IWD R++ + H V +++ P+ +LAT
Sbjct: 224 AWRSDGLQL-ASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTM 282
Query: 282 TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSA-DDRRLMVWDLNRIG-DEQ 339
+ T +V + W P+ + ++++ D L +W + G +Q
Sbjct: 283 DKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQ 342
Query: 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391
+++ A D +L+S +I +S+ A D ++ W++ D
Sbjct: 343 VDIPAHD--TRVLYSALSPDGRI------------LSTAASDENLKFWRVYD 380
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 18/120 (15%)
Query: 274 LATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLN 333
L+ + V ++D+ T L ++ H V + W+ VL+S + + D+
Sbjct: 149 LSVGLGNGLVDIYDVESQT-KLRTMAGHQARVGCLSWN---RHVLSSGSRSGAIHHHDV- 203
Query: 334 RIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393
RI + Q+ + GH +++ +W ++D ++S +DN VQ+W SI
Sbjct: 204 RIANHQIG------------TLQGHSSEVCGLAW-RSDGLQLASGGNDNVVQIWDARSSI 250
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 157 DPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHES 216
DP L GH LS F++G ++SGS D +W +L ++ +AH +
Sbjct: 95 DPLYTLIGHQGNVCSLS---FQDGVVISGSWDKTAKVWKEGSL--------VYNLQAHNA 143
Query: 217 VVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA----HEKEVNYLSFNPYNEW 272
V D +EN F +A D + +W Q + +K H V +L+ +
Sbjct: 144 SVWDAKVVSFSENKFLTASADKTIKLW-----QNDKVIKTFSGIHNDVVRHLAVVDDGHF 198
Query: 273 VLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVW 330
+ + S+D + L D V L H V+ ++ PN + V S +DR + +W
Sbjct: 199 I--SCSNDGLIKLVDXHTGDV-LRTYEGHESFVYCIKLLPNGDIV--SCGEDRTVRIW 251
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 14/95 (14%)
Query: 275 ATASSDTTVALFDMRKMTVPL-HILSSHTEEVFQVEW-DPNHETVLASSADDRRLMVWDL 332
AT SSD T+ +F++ T L L+ H V++V+W P T+LAS + D ++ +W
Sbjct: 25 ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIW-- 82
Query: 333 NRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSW 367
E+G + H H A ++ W
Sbjct: 83 ----------KEENGRWSQIAVHAVHSASVNSVQW 107
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 104/232 (44%), Gaps = 30/232 (12%)
Query: 163 KGHDKEGYGLSWSPFKEG---YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHE--SV 217
+ HD + ++W K+ +V+GS D+ + +W +D+ +D E H+ V
Sbjct: 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWK----WRDERLDLQWSLEGHQLGVV 84
Query: 218 VEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATA 277
D+S L + S+ D + +WDL + + + A + L+F+P +++ LAT
Sbjct: 85 SVDISHTLP---IAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY-LATG 140
Query: 278 SSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGD 337
+ V +F + + L + + + + + P+ + LAS A D + ++D+
Sbjct: 141 THVGKVNIFGVESGKKE-YSLDTRGKFILSIAYSPDGK-YLASGAIDGIINIFDI----- 193
Query: 338 EQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
+LL + GH I +++ D ++ + +DD ++++ +
Sbjct: 194 ---------ATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDV 235
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/166 (19%), Positives = 66/166 (39%), Gaps = 29/166 (17%)
Query: 175 SPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSA 234
SP + YL++GS I +W++ + +V + Y+ +V + + N + F +
Sbjct: 72 SPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQIT--MIPNFDAFAVS 129
Query: 235 GDDCQLMIWDLRTNQTQQRVK----------------AHEKEVNYLSFNPYNEWVLATAS 278
D Q+++ + Q + VK +E V +F + +L +
Sbjct: 130 SKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALT 189
Query: 279 SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADD 324
+ + V +FD+R + E + +E P H V + D+
Sbjct: 190 NLSRVIIFDIRTL-----------ERLQIIENSPRHGAVSSICIDE 224
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 56/111 (50%), Gaps = 13/111 (11%)
Query: 233 SAGD-DCQLMIWDLRTNQTQ-QRVKAHEKEVNYLSFNP---------YNEWVLATASSDT 281
+AGD +++++DL++ + + R ++N +S+ P E ++AT S DT
Sbjct: 504 AAGDVXGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT 563
Query: 282 TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDL 332
+ ++ +++ + L++H + V + W+ + L SS D + W++
Sbjct: 564 NIFIYSVKRPXKIIKALNAHKDGVNNLLWET--PSTLVSSGADACIKRWNV 612
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 22/146 (15%)
Query: 253 RVKAHEKEVNYLSFNP-YNEW--VLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVE 309
++ H+ + +S+ P W ++AT D + +F + + PL +EE
Sbjct: 209 KLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLA-----SEESL--- 260
Query: 310 WDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAE---DGPPELLFSHGGHKAKISDFS 366
+ + +SAD + D D E AE + ELL H H ++ S
Sbjct: 261 ---TNSNMFDNSAD----VDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVS 313
Query: 367 WNKNDPWVISSVADDNTVQVWQMTDS 392
WN ++SS DD V++W+ T S
Sbjct: 314 WNLTGT-ILSSAGDDGKVRLWKATYS 338
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 22/146 (15%)
Query: 253 RVKAHEKEVNYLSFNP-YNEW--VLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVE 309
++ H+ + +S+ P W ++AT D + +F + + PL +EE
Sbjct: 207 KLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLA-----SEESL--- 258
Query: 310 WDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAE---DGPPELLFSHGGHKAKISDFS 366
+ + +SAD + D D E AE + ELL H H ++ S
Sbjct: 259 ---TNSNMFDNSAD----VDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVS 311
Query: 367 WNKNDPWVISSVADDNTVQVWQMTDS 392
WN ++SS DD V++W+ T S
Sbjct: 312 WNLTGT-ILSSAGDDGKVRLWKATYS 336
>pdb|4FHL|A Chain A, Nucleoporin Nup37 From Schizosaccharomyces Pombe
pdb|4FHM|A Chain A, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
pdb|4FHN|A Chain A, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|C Chain C, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 394
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
Query: 165 HDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVY---EAHESVVEDV 221
HD +G ++ SP +L DN + L + +++ I HV H + V D+
Sbjct: 89 HDGDG-NVNSSPVYSLFLACVCQDNTVRL----IITKNETIITQHVLGGKSGHHNFVNDI 143
Query: 222 S----WHLKN---ENLFGSAGDDCQLMIWDL 245
+ N E + S GDDC L+IW L
Sbjct: 144 DIADVYSADNRLAEQVIASVGDDCTLIIWRL 174
>pdb|4GQ1|A Chain A, Nup37 Of S. Pombe
pdb|4GQ2|P Chain P, S. Pombe Nup120-Nup37 Complex
Length = 393
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
Query: 165 HDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVY---EAHESVVEDV 221
HD +G ++ SP +L DN + L + +++ I HV H + V D+
Sbjct: 88 HDGDG-NVNSSPVYSLFLACVCQDNTVRL----IITKNETIITQHVLGGKSGHHNFVNDI 142
Query: 222 S----WHLKN---ENLFGSAGDDCQLMIWDL 245
+ N E + S GDDC L+IW L
Sbjct: 143 DIADVYSADNRLAEQVIASVGDDCTLIIWRL 173
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 56/111 (50%), Gaps = 13/111 (11%)
Query: 233 SAGDDC-QLMIWDLRTNQTQ-QRVKAHEKEVNYLSFNP---------YNEWVLATASSDT 281
+AGD +++++DL++ + + R ++N +S+ P E ++AT S DT
Sbjct: 504 AAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT 563
Query: 282 TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDL 332
+ ++ +++ + L++H + V + W+ + L SS D + W++
Sbjct: 564 NIFIYSVKRPMKIIKALNAHKDGVNNLLWET--PSTLVSSGADACIKRWNV 612
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQD 202
+ GH+K L+ +P L+SGS+D +I W S++ QD
Sbjct: 335 ISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQD 370
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 350 ELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392
ELL H H ++ SWN ++SS DD V++W+ T S
Sbjct: 297 ELLSEHDDHNGEVWSVSWNLTGT-ILSSAGDDGKVRLWKATYS 338
>pdb|3MOG|A Chain A, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
pdb|3MOG|B Chain B, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
pdb|3MOG|C Chain C, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
Length = 483
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 183 VSGSHDNKICLWDVSALAQDKVIDAMH 209
V+ SH +++ L+D+SA A + ID +H
Sbjct: 23 VAASHGHQVLLYDISAEALTRAIDGIH 49
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 164 GHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSW 223
GH L + P L+S S D+ + LW++ D ++ E H V +
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT---DTLVAIFGGVEGHRDEVLSADY 205
Query: 224 HLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK 255
L E + S G D L +W + + + +K
Sbjct: 206 DLLGEKIM-SCGMDHSLKLWRINSKRMMNAIK 236
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 164 GHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSW 223
GH L + P L+S S D+ + LW++ D ++ E H V +
Sbjct: 108 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT---DTLVAIFGGVEGHRDEVLSADY 164
Query: 224 HLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK 255
L E + S G D L +W + + + +K
Sbjct: 165 DLLGEKIM-SCGMDHSLKLWRINSKRMMNAIK 195
>pdb|3FCM|A Chain A, Crystal Structure Of A Nudix Hydrolase From Clostridium
Perfringens
pdb|3FCM|B Chain B, Crystal Structure Of A Nudix Hydrolase From Clostridium
Perfringens
Length = 197
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 18/95 (18%)
Query: 85 LPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFD 144
+ K+ + G KN P++ K + V+G + R + + +L T Y+ +
Sbjct: 87 VAIKELKEETGVKNPTPLLDKAFALDVLTVNGHIKRGKYVSSHLHLNLT-------YLIE 139
Query: 145 CAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKE 179
C++ D L LK + E G+ W PF E
Sbjct: 140 CSE---------DETLXLK--EDENSGVXWIPFNE 163
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 164 GHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSW 223
GH L + P L+S S D+ + LW++ D ++ E H V +
Sbjct: 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT---DTLVAIFGGVEGHRDEVLSADY 169
Query: 224 HLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK 255
L E + S G D L +W + + + +K
Sbjct: 170 DLLGEKIM-SCGMDHSLKLWRINSKRMMNAIK 200
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 164 GHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSW 223
GH L + P L+S S D+ + LW++ D ++ E H V +
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT---DTLVAIFGGVEGHRDEVLSADY 168
Query: 224 HLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK 255
L E + S G D L +W + + + +K
Sbjct: 169 DLLGEKIM-SCGMDHSLKLWRINSKRMMNAIK 199
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 164 GHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSW 223
GH L + P L+S S D+ + LW++ D ++ E H V +
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT---DTLVAIFGGVEGHRDEVLSADY 168
Query: 224 HLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK 255
L E + S G D L +W + + + +K
Sbjct: 169 DLLGEKIM-SCGMDHSLKLWRINSKRMMNAIK 199
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
pdb|1OLM|C Chain C, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 127 KPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLS--WSPFKEGY 181
K +L+ TK CE+ + +CA Q K + + +D EG GL W P E Y
Sbjct: 117 KQDLLRTKMRECELLLQECAHQTTKLGRKVETITII--YDCEGLGLKHLWKPAVEAY 171
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 127 KPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLS--WSPFKEGY 181
K +L+ TK CE+ + +CA Q K + + +D EG GL W P E Y
Sbjct: 117 KQDLLRTKMRECELLLQECAHQTTKLGRKVETITII--YDCEGLGLKHLWKPAVEAY 171
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|C Chain C, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|E Chain E, The Crystal Structure Of Human Supernatant Protein Factor
Length = 403
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 127 KPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLS--WSPFKEGY 181
K +L+ TK CE+ + +CA Q K + + +D EG GL W P E Y
Sbjct: 117 KQDLLRTKXRECELLLQECAHQTTKLGRKVETITII--YDCEGLGLKHLWKPAVEAY 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,217,510
Number of Sequences: 62578
Number of extensions: 571870
Number of successful extensions: 1968
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 1230
Number of HSP's gapped (non-prelim): 332
length of query: 406
length of database: 14,973,337
effective HSP length: 101
effective length of query: 305
effective length of database: 8,652,959
effective search space: 2639152495
effective search space used: 2639152495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)