Query 015484
Match_columns 406
No_of_seqs 662 out of 4171
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 06:44:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015484.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015484hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0264 Nucleosome remodeling 100.0 6.7E-76 1.5E-80 501.9 37.4 393 8-402 11-416 (422)
2 KOG0302 Ribosome Assembly prot 100.0 5.8E-44 1.3E-48 298.8 27.8 355 25-388 57-436 (440)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.5E-44 3.3E-49 306.4 24.6 290 31-389 169-459 (459)
4 KOG0271 Notchless-like WD40 re 100.0 1.7E-43 3.6E-48 296.5 27.8 300 63-397 103-446 (480)
5 KOG0271 Notchless-like WD40 re 100.0 1E-42 2.3E-47 291.8 27.1 315 37-388 115-479 (480)
6 KOG0272 U4/U6 small nuclear ri 100.0 3.6E-43 7.7E-48 298.1 21.0 251 111-394 171-422 (459)
7 KOG0277 Peroxisomal targeting 100.0 6.7E-41 1.5E-45 266.6 23.5 298 38-389 9-308 (311)
8 KOG0263 Transcription initiati 100.0 5.2E-40 1.1E-44 299.4 25.2 264 104-394 367-653 (707)
9 KOG0284 Polyadenylation factor 100.0 1.6E-40 3.5E-45 280.8 17.8 277 81-391 100-381 (464)
10 KOG0286 G-protein beta subunit 100.0 7.3E-38 1.6E-42 254.1 28.5 289 69-388 49-343 (343)
11 KOG0315 G-protein beta subunit 100.0 3.2E-37 7E-42 244.9 28.1 253 108-393 32-291 (311)
12 KOG0279 G protein beta subunit 100.0 1.7E-37 3.6E-42 250.5 26.4 258 110-397 10-269 (315)
13 KOG0286 G-protein beta subunit 100.0 1.6E-36 3.5E-41 246.4 28.7 255 111-392 51-305 (343)
14 KOG0263 Transcription initiati 100.0 3.2E-37 7E-42 281.3 26.5 255 103-378 439-703 (707)
15 KOG0279 G protein beta subunit 100.0 3.5E-36 7.6E-41 242.9 28.3 256 108-391 56-314 (315)
16 KOG0284 Polyadenylation factor 100.0 4.9E-38 1.1E-42 265.8 17.2 242 114-390 95-337 (464)
17 KOG0273 Beta-transducin family 100.0 2.7E-36 5.8E-41 259.7 26.6 245 114-394 234-486 (524)
18 KOG0645 WD40 repeat protein [G 100.0 5.9E-35 1.3E-39 234.9 28.9 271 107-390 6-311 (312)
19 KOG0282 mRNA splicing factor [ 100.0 7.1E-37 1.5E-41 264.2 17.1 254 104-388 203-503 (503)
20 KOG0265 U5 snRNP-specific prot 100.0 3.9E-35 8.5E-40 239.1 24.0 254 109-392 41-298 (338)
21 KOG0277 Peroxisomal targeting 100.0 3.1E-35 6.8E-40 234.3 20.4 249 119-392 12-267 (311)
22 KOG0295 WD40 repeat-containing 100.0 2.7E-35 5.9E-40 245.9 20.9 254 109-395 102-369 (406)
23 KOG0285 Pleiotropic regulator 100.0 2.7E-35 5.9E-40 245.4 20.6 250 107-393 142-392 (460)
24 KOG0281 Beta-TrCP (transducin 100.0 1.7E-35 3.7E-40 245.8 17.1 253 108-395 230-482 (499)
25 KOG0319 WD40-repeat-containing 100.0 1.7E-34 3.7E-39 261.2 21.9 260 110-393 360-622 (775)
26 KOG0291 WD40-repeat-containing 100.0 7.1E-33 1.5E-37 251.2 30.9 267 108-395 343-617 (893)
27 KOG0318 WD40 repeat stress pro 100.0 1.5E-32 3.1E-37 239.8 30.5 286 80-393 150-563 (603)
28 KOG0273 Beta-transducin family 100.0 4.6E-32 1E-36 233.7 31.6 273 82-390 240-523 (524)
29 KOG0266 WD40 repeat-containing 100.0 1.9E-32 4.1E-37 255.7 30.1 249 114-393 158-412 (456)
30 KOG0295 WD40 repeat-containing 100.0 2.8E-33 6E-38 233.9 21.2 248 109-389 144-405 (406)
31 KOG0296 Angio-associated migra 100.0 4.1E-32 8.9E-37 227.0 28.1 249 107-390 56-398 (399)
32 KOG0276 Vesicle coat complex C 100.0 2.3E-33 5.1E-38 249.3 21.9 250 113-395 11-262 (794)
33 KOG0293 WD40 repeat-containing 100.0 7E-33 1.5E-37 235.0 23.1 276 82-392 229-515 (519)
34 KOG0315 G-protein beta subunit 100.0 4.5E-32 9.8E-37 215.7 26.0 240 126-392 8-247 (311)
35 PLN00181 protein SPA1-RELATED; 100.0 1.3E-31 2.8E-36 268.1 35.8 260 113-392 481-740 (793)
36 KOG0313 Microtubule binding pr 100.0 1.4E-32 3.1E-37 230.9 23.8 258 109-390 138-418 (423)
37 cd00200 WD40 WD40 domain, foun 100.0 1.8E-30 4E-35 229.4 37.1 280 38-388 10-289 (289)
38 KOG0319 WD40-repeat-containing 100.0 1.5E-32 3.3E-37 248.6 23.6 257 110-396 318-583 (775)
39 KOG0292 Vesicle coat complex C 100.0 7.1E-33 1.5E-37 255.1 21.6 248 114-393 8-283 (1202)
40 KOG0265 U5 snRNP-specific prot 100.0 1.1E-31 2.5E-36 219.0 26.2 243 112-388 87-336 (338)
41 KOG0316 Conserved WD40 repeat- 100.0 5.2E-32 1.1E-36 213.7 22.7 247 109-394 11-261 (307)
42 KOG0266 WD40 repeat-containing 100.0 1.2E-31 2.6E-36 250.3 28.0 245 112-390 200-454 (456)
43 KOG0281 Beta-TrCP (transducin 100.0 2.3E-33 5E-38 233.2 14.3 235 114-395 196-433 (499)
44 PLN00181 protein SPA1-RELATED; 100.0 8.4E-31 1.8E-35 262.3 35.3 259 111-389 528-792 (793)
45 KOG1007 WD repeat protein TSSC 100.0 2.5E-31 5.5E-36 215.8 25.0 311 61-392 26-363 (370)
46 cd00200 WD40 WD40 domain, foun 100.0 1.5E-30 3.3E-35 230.0 32.2 246 113-393 7-252 (289)
47 KOG0643 Translation initiation 100.0 1.5E-31 3.2E-36 214.9 22.9 266 109-395 4-322 (327)
48 KOG0291 WD40-repeat-containing 100.0 4.6E-31 1E-35 239.5 28.7 257 104-395 295-555 (893)
49 KOG0318 WD40 repeat stress pro 100.0 2.8E-30 6.2E-35 225.5 30.8 268 109-396 53-356 (603)
50 KOG0276 Vesicle coat complex C 100.0 1.6E-31 3.6E-36 237.6 22.4 238 115-384 55-293 (794)
51 PTZ00421 coronin; Provisional 100.0 3.9E-30 8.5E-35 239.2 31.2 261 116-394 21-294 (493)
52 KOG0283 WD40 repeat-containing 100.0 2.9E-31 6.3E-36 244.4 23.3 251 113-392 265-578 (712)
53 KOG0640 mRNA cleavage stimulat 100.0 5.3E-31 1.2E-35 216.0 22.2 275 104-388 101-424 (430)
54 KOG0285 Pleiotropic regulator 100.0 1.6E-30 3.4E-35 217.1 25.1 264 103-396 182-445 (460)
55 KOG0313 Microtubule binding pr 100.0 1.1E-30 2.3E-35 219.6 22.5 255 108-393 98-379 (423)
56 PTZ00420 coronin; Provisional 100.0 2.4E-29 5.2E-34 235.0 33.4 237 134-394 50-297 (568)
57 KOG0290 Conserved WD40 repeat- 100.0 5.2E-30 1.1E-34 208.4 24.8 317 31-388 38-363 (364)
58 PTZ00421 coronin; Provisional 100.0 3.2E-29 6.9E-34 233.2 32.5 255 111-392 71-333 (493)
59 KOG0268 Sof1-like rRNA process 100.0 1.5E-31 3.3E-36 223.4 15.2 254 110-391 61-346 (433)
60 KOG0310 Conserved WD40 repeat- 100.0 9.1E-31 2E-35 226.8 20.5 246 114-392 25-270 (487)
61 KOG0305 Anaphase promoting com 100.0 6.2E-30 1.4E-34 229.7 25.7 253 104-392 207-463 (484)
62 KOG0645 WD40 repeat protein [G 100.0 1.2E-29 2.6E-34 204.3 24.4 215 159-392 7-227 (312)
63 KOG0292 Vesicle coat complex C 100.0 5.4E-30 1.2E-34 236.3 25.0 247 110-391 46-322 (1202)
64 KOG0270 WD40 repeat-containing 100.0 1.1E-29 2.5E-34 217.6 25.0 270 106-393 164-452 (463)
65 KOG0269 WD40 repeat-containing 100.0 7.3E-31 1.6E-35 238.9 17.9 251 116-392 88-342 (839)
66 KOG0641 WD40 repeat protein [G 100.0 2.6E-28 5.7E-33 191.9 29.7 271 102-390 19-349 (350)
67 KOG0264 Nucleosome remodeling 100.0 1E-29 2.2E-34 218.7 23.8 220 110-334 172-405 (422)
68 KOG0306 WD40-repeat-containing 100.0 3.6E-29 7.7E-34 227.2 27.8 257 107-394 405-668 (888)
69 KOG0275 Conserved WD40 repeat- 100.0 6.4E-30 1.4E-34 211.0 19.6 262 109-396 207-473 (508)
70 KOG0278 Serine/threonine kinas 100.0 2E-30 4.4E-35 206.5 15.2 249 109-394 53-301 (334)
71 KOG1332 Vesicle coat complex C 100.0 8.3E-30 1.8E-34 202.4 18.5 257 112-391 8-287 (299)
72 KOG0772 Uncharacterized conser 100.0 1.4E-29 3.1E-34 220.7 21.6 267 103-388 155-485 (641)
73 KOG0310 Conserved WD40 repeat- 100.0 2.4E-29 5.1E-34 218.1 22.1 242 113-389 66-308 (487)
74 PTZ00420 coronin; Provisional 100.0 1E-27 2.2E-32 224.2 31.3 240 109-371 68-318 (568)
75 KOG1446 Histone H3 (Lys4) meth 100.0 3E-27 6.6E-32 194.9 30.3 252 106-393 4-265 (311)
76 KOG0294 WD40 repeat-containing 100.0 1.5E-27 3.2E-32 196.3 28.0 279 62-393 2-284 (362)
77 KOG0973 Histone transcription 100.0 1.4E-28 3.1E-33 232.4 25.0 262 115-394 13-359 (942)
78 KOG1407 WD40 repeat protein [F 100.0 2.6E-28 5.5E-33 195.7 22.4 251 109-393 14-264 (313)
79 KOG0307 Vesicle coat complex C 100.0 2E-29 4.4E-34 239.1 16.9 268 106-393 55-330 (1049)
80 KOG0300 WD40 repeat-containing 100.0 2.6E-28 5.7E-33 200.9 20.5 264 105-397 137-435 (481)
81 KOG0274 Cdc4 and related F-box 100.0 9.1E-28 2E-32 223.8 26.6 245 109-396 243-488 (537)
82 KOG0269 WD40 repeat-containing 100.0 9E-29 2E-33 225.4 18.3 258 114-394 38-300 (839)
83 KOG0308 Conserved WD40 repeat- 100.0 2.1E-28 4.6E-33 218.9 19.2 254 113-391 19-286 (735)
84 KOG0647 mRNA export protein (c 100.0 2.4E-27 5.3E-32 193.9 23.5 246 114-392 26-283 (347)
85 KOG0282 mRNA splicing factor [ 100.0 5E-29 1.1E-33 215.8 14.2 227 157-393 205-465 (503)
86 KOG0316 Conserved WD40 repeat- 100.0 1.8E-27 3.9E-32 188.1 21.5 245 106-388 50-297 (307)
87 KOG2445 Nuclear pore complex c 100.0 8.2E-27 1.8E-31 191.3 25.7 271 112-390 10-318 (361)
88 KOG0299 U3 snoRNP-associated p 100.0 3.3E-27 7.2E-32 203.4 23.7 268 108-392 135-412 (479)
89 KOG0289 mRNA splicing factor [ 100.0 6.3E-27 1.4E-31 200.2 23.9 249 116-398 220-470 (506)
90 KOG0274 Cdc4 and related F-box 100.0 2E-27 4.4E-32 221.5 22.5 239 114-396 207-447 (537)
91 KOG4283 Transcription-coupled 100.0 6.2E-27 1.3E-31 191.0 22.1 269 112-389 40-364 (397)
92 KOG0289 mRNA splicing factor [ 100.0 2E-26 4.3E-31 197.2 25.5 248 111-389 257-505 (506)
93 KOG1407 WD40 repeat protein [F 100.0 4.5E-26 9.8E-31 182.9 25.6 243 111-390 60-311 (313)
94 KOG4283 Transcription-coupled 100.0 3.6E-27 7.8E-32 192.3 18.2 229 162-393 39-279 (397)
95 KOG0293 WD40 repeat-containing 100.0 1.5E-26 3.3E-31 196.7 22.0 254 111-396 220-476 (519)
96 KOG0288 WD40 repeat protein Ti 100.0 5.5E-27 1.2E-31 199.4 17.8 237 113-388 217-459 (459)
97 KOG0275 Conserved WD40 repeat- 100.0 8E-27 1.7E-31 192.8 18.2 244 111-389 259-508 (508)
98 KOG1036 Mitotic spindle checkp 100.0 8.8E-26 1.9E-30 185.5 24.0 244 114-393 12-265 (323)
99 KOG0270 WD40 repeat-containing 100.0 1.5E-26 3.3E-31 198.5 20.2 282 29-335 163-451 (463)
100 KOG0300 WD40 repeat-containing 100.0 1.3E-26 2.8E-31 191.0 18.6 263 108-393 183-479 (481)
101 KOG0302 Ribosome Assembly prot 99.9 1.9E-26 4.1E-31 194.1 19.2 224 162-397 147-385 (440)
102 KOG0301 Phospholipase A2-activ 99.9 7.5E-26 1.6E-30 204.1 23.1 239 111-394 53-292 (745)
103 KOG0640 mRNA cleavage stimulat 99.9 3.7E-26 8E-31 187.7 19.2 217 159-394 105-339 (430)
104 KOG0288 WD40 repeat protein Ti 99.9 4.6E-27 1E-31 199.8 14.4 253 111-396 171-423 (459)
105 KOG0306 WD40-repeat-containing 99.9 4.2E-25 9.1E-30 201.0 26.1 303 26-391 309-623 (888)
106 KOG0301 Phospholipase A2-activ 99.9 1.8E-25 3.8E-30 201.7 23.1 239 111-390 10-249 (745)
107 KOG4328 WD40 protein [Function 99.9 2.5E-25 5.4E-30 191.7 22.6 262 113-393 184-453 (498)
108 KOG0299 U3 snoRNP-associated p 99.9 6.2E-25 1.3E-29 189.5 24.8 247 113-392 200-458 (479)
109 KOG0267 Microtubule severing p 99.9 5E-27 1.1E-31 212.5 11.0 236 111-381 24-259 (825)
110 KOG0283 WD40 repeat-containing 99.9 1.4E-25 3E-30 207.2 19.8 218 162-392 262-534 (712)
111 KOG0646 WD40 repeat protein [G 99.9 1.7E-25 3.6E-30 193.3 19.0 259 109-394 75-354 (476)
112 KOG1332 Vesicle coat complex C 99.9 9.1E-26 2E-30 179.5 16.0 213 162-390 7-241 (299)
113 KOG1446 Histone H3 (Lys4) meth 99.9 1.6E-23 3.4E-28 173.1 29.1 243 113-394 54-307 (311)
114 KOG2096 WD40 repeat protein [G 99.9 1.5E-24 3.3E-29 178.9 22.9 273 107-390 78-402 (420)
115 KOG0305 Anaphase promoting com 99.9 1.2E-24 2.7E-29 195.8 24.2 236 119-392 181-421 (484)
116 KOG0296 Angio-associated migra 99.9 3.7E-24 8.1E-29 179.6 25.2 206 107-333 98-398 (399)
117 KOG0772 Uncharacterized conser 99.9 2E-25 4.3E-30 195.0 18.1 217 159-392 160-396 (641)
118 KOG0278 Serine/threonine kinas 99.9 8.2E-26 1.8E-30 180.3 14.4 205 109-335 94-299 (334)
119 KOG1587 Cytoplasmic dynein int 99.9 4.9E-24 1.1E-28 197.3 27.5 277 106-398 233-524 (555)
120 KOG0641 WD40 repeat protein [G 99.9 1E-23 2.2E-28 166.1 24.7 220 105-333 79-349 (350)
121 KOG1274 WD40 repeat protein [G 99.9 9.9E-24 2.1E-28 196.2 26.7 245 111-391 9-263 (933)
122 KOG0308 Conserved WD40 repeat- 99.9 5E-25 1.1E-29 197.5 17.3 254 112-392 70-329 (735)
123 KOG0647 mRNA export protein (c 99.9 2.4E-23 5.1E-28 170.7 25.5 253 76-381 50-315 (347)
124 KOG0643 Translation initiation 99.9 6.1E-24 1.3E-28 171.3 21.7 210 160-394 4-224 (327)
125 KOG1273 WD40 repeat protein [G 99.9 5.8E-24 1.2E-28 175.2 21.6 254 109-391 18-323 (405)
126 KOG1036 Mitotic spindle checkp 99.9 1.3E-23 2.9E-28 172.7 23.6 234 107-379 46-293 (323)
127 KOG1539 WD repeat protein [Gen 99.9 6E-23 1.3E-27 189.1 29.6 274 107-395 235-611 (910)
128 KOG0321 WD40 repeat-containing 99.9 4.6E-24 1E-28 190.9 21.2 266 107-396 92-397 (720)
129 KOG0307 Vesicle coat complex C 99.9 3.3E-25 7.1E-30 210.8 13.8 261 118-395 9-289 (1049)
130 KOG0973 Histone transcription 99.9 1.3E-23 2.9E-28 199.0 23.3 217 108-334 62-356 (942)
131 KOG0267 Microtubule severing p 99.9 1.7E-25 3.6E-30 202.8 9.6 222 131-392 7-228 (825)
132 KOG0639 Transducin-like enhanc 99.9 1E-23 2.2E-28 183.9 20.0 241 113-389 463-703 (705)
133 KOG0639 Transducin-like enhanc 99.9 2.7E-24 5.8E-29 187.4 16.1 253 107-392 411-665 (705)
134 KOG0290 Conserved WD40 repeat- 99.9 5.2E-23 1.1E-27 167.8 21.7 271 104-394 33-322 (364)
135 KOG0268 Sof1-like rRNA process 99.9 1.2E-24 2.6E-29 182.3 12.5 211 159-395 59-307 (433)
136 KOG4328 WD40 protein [Function 99.9 1.4E-23 3E-28 181.0 18.5 218 159-390 179-399 (498)
137 KOG2919 Guanine nucleotide-bin 99.9 8.4E-23 1.8E-27 169.0 22.1 257 107-391 96-368 (406)
138 KOG0650 WD40 repeat nucleolar 99.9 4.7E-23 1E-27 183.3 21.7 266 104-387 389-732 (733)
139 KOG2048 WD40 repeat protein [G 99.9 3.6E-22 7.8E-27 180.2 25.3 244 114-393 24-278 (691)
140 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.1E-21 2.3E-26 175.4 28.4 250 110-394 25-283 (300)
141 KOG1408 WD40 repeat protein [F 99.9 5.9E-23 1.3E-27 186.2 19.4 249 111-392 455-715 (1080)
142 KOG2055 WD40 repeat protein [G 99.9 5E-22 1.1E-26 171.7 23.6 258 116-390 214-512 (514)
143 KOG0646 WD40 repeat protein [G 99.9 2.6E-22 5.5E-27 173.7 21.4 246 129-394 52-311 (476)
144 KOG0294 WD40 repeat-containing 99.9 4E-22 8.7E-27 164.4 21.1 232 130-392 3-239 (362)
145 KOG4378 Nuclear protein COP1 [ 99.9 2E-22 4.2E-27 175.6 18.8 235 105-371 70-305 (673)
146 KOG1007 WD repeat protein TSSC 99.9 4.6E-22 1E-26 162.2 19.5 235 137-392 39-291 (370)
147 KOG0321 WD40 repeat-containing 99.9 3.4E-22 7.3E-27 179.1 20.4 254 119-394 53-351 (720)
148 KOG1063 RNA polymerase II elon 99.9 1.6E-21 3.6E-26 176.3 25.0 262 112-392 264-650 (764)
149 KOG1188 WD40 repeat protein [G 99.9 7.8E-22 1.7E-26 164.5 20.0 248 129-390 41-346 (376)
150 KOG1034 Transcriptional repres 99.9 9.8E-22 2.1E-26 163.1 20.5 312 24-389 25-382 (385)
151 KOG2106 Uncharacterized conser 99.9 8.9E-21 1.9E-25 165.7 26.1 241 116-390 247-521 (626)
152 KOG0303 Actin-binding protein 99.9 2.8E-21 6E-26 164.0 22.0 218 160-393 75-297 (472)
153 KOG4378 Nuclear protein COP1 [ 99.9 7E-22 1.5E-26 172.2 18.6 246 117-392 36-282 (673)
154 KOG2445 Nuclear pore complex c 99.9 1.4E-20 3.1E-25 154.8 24.0 229 104-334 47-319 (361)
155 KOG2096 WD40 repeat protein [G 99.9 2E-21 4.3E-26 160.6 18.9 221 160-394 80-312 (420)
156 KOG1034 Transcriptional repres 99.9 1.8E-21 4E-26 161.4 16.9 266 111-393 34-340 (385)
157 KOG2106 Uncharacterized conser 99.9 2E-19 4.3E-24 157.3 29.4 262 110-389 282-625 (626)
158 KOG2919 Guanine nucleotide-bin 99.9 1.5E-20 3.3E-25 155.7 21.0 254 118-391 52-328 (406)
159 KOG0642 Cell-cycle nuclear pro 99.9 2E-21 4.4E-26 172.0 17.0 268 110-398 289-569 (577)
160 KOG0303 Actin-binding protein 99.9 1.4E-20 3E-25 159.8 20.5 214 111-334 77-295 (472)
161 KOG4227 WD40 repeat protein [G 99.9 3.8E-20 8.3E-25 157.1 22.9 272 109-394 50-391 (609)
162 KOG1009 Chromatin assembly com 99.9 2.8E-20 6E-25 158.6 21.8 173 114-289 12-195 (434)
163 KOG1274 WD40 repeat protein [G 99.9 5.7E-20 1.2E-24 171.5 25.2 220 114-372 55-283 (933)
164 KOG2048 WD40 repeat protein [G 99.9 1.7E-19 3.7E-24 163.1 27.5 245 114-391 68-320 (691)
165 KOG1587 Cytoplasmic dynein int 99.9 1.3E-19 2.7E-24 168.2 25.3 238 138-397 222-479 (555)
166 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.5E-19 5.5E-24 160.0 26.8 235 129-394 2-241 (300)
167 KOG1408 WD40 repeat protein [F 99.9 2.7E-20 5.9E-25 169.1 18.4 212 111-334 497-714 (1080)
168 KOG0322 G-protein beta subunit 99.9 2.3E-20 5E-25 150.5 14.9 248 113-389 12-322 (323)
169 KOG1063 RNA polymerase II elon 99.8 2E-19 4.3E-24 163.0 19.8 261 111-390 357-699 (764)
170 KOG1445 Tumor-specific antigen 99.8 1.6E-19 3.5E-24 162.1 18.5 243 134-392 599-846 (1012)
171 KOG0649 WD40 repeat protein [G 99.8 1.3E-18 2.9E-23 138.8 20.6 246 117-392 12-276 (325)
172 KOG1273 WD40 repeat protein [G 99.8 5.6E-19 1.2E-23 146.0 18.7 199 169-392 26-228 (405)
173 KOG1539 WD repeat protein [Gen 99.8 2.3E-18 5E-23 159.2 24.1 262 109-394 108-369 (910)
174 KOG0771 Prolactin regulatory e 99.8 7.6E-18 1.6E-22 144.8 23.9 198 170-391 148-355 (398)
175 KOG1310 WD40 repeat protein [G 99.8 5.2E-19 1.1E-23 156.4 16.5 228 159-393 43-306 (758)
176 KOG1523 Actin-related protein 99.8 9.8E-18 2.1E-22 139.1 22.6 208 114-334 9-237 (361)
177 PRK11028 6-phosphogluconolacto 99.8 2.3E-16 4.9E-21 142.8 33.6 264 105-390 24-304 (330)
178 KOG1188 WD40 repeat protein [G 99.8 1.5E-18 3.2E-23 145.1 17.0 195 181-393 42-245 (376)
179 KOG1538 Uncharacterized conser 99.8 1.1E-17 2.5E-22 151.2 23.6 244 117-392 14-295 (1081)
180 KOG1240 Protein kinase contain 99.8 2.8E-17 6E-22 158.0 25.1 282 107-393 1040-1337(1431)
181 COG2319 FOG: WD40 repeat [Gene 99.8 2.5E-16 5.4E-21 147.2 31.7 254 110-394 60-318 (466)
182 KOG1963 WD40 repeat protein [G 99.8 8.8E-17 1.9E-21 150.0 27.4 263 113-396 203-545 (792)
183 KOG1517 Guanine nucleotide bin 99.8 9.7E-18 2.1E-22 158.8 21.0 262 115-393 1109-1384(1387)
184 PF12265 CAF1C_H4-bd: Histone- 99.8 2.8E-20 6.1E-25 125.6 2.2 71 14-86 1-72 (74)
185 KOG0649 WD40 repeat protein [G 99.8 6.4E-16 1.4E-20 123.7 27.1 247 104-388 51-314 (325)
186 COG2319 FOG: WD40 repeat [Gene 99.8 1E-15 2.2E-20 143.1 32.2 247 116-393 110-362 (466)
187 KOG2055 WD40 repeat protein [G 99.8 7.1E-17 1.5E-21 140.1 22.0 205 166-395 213-422 (514)
188 KOG1310 WD40 repeat protein [G 99.8 6.9E-18 1.5E-22 149.3 15.8 217 111-337 46-307 (758)
189 KOG1524 WD40 repeat-containing 99.8 1.1E-17 2.4E-22 147.7 16.8 210 129-389 76-285 (737)
190 KOG0650 WD40 repeat nucleolar 99.8 8.7E-18 1.9E-22 150.1 16.4 210 159-388 393-678 (733)
191 KOG1517 Guanine nucleotide bin 99.8 1E-16 2.3E-21 151.9 23.9 256 117-396 1066-1339(1387)
192 KOG1523 Actin-related protein 99.8 2.3E-16 5E-21 131.0 22.8 244 35-324 8-269 (361)
193 KOG4227 WD40 repeat protein [G 99.8 2.3E-17 5.1E-22 140.3 16.9 175 159-336 49-228 (609)
194 KOG0644 Uncharacterized conser 99.8 1.2E-18 2.5E-23 161.1 9.7 243 109-394 184-430 (1113)
195 KOG2110 Uncharacterized conser 99.8 8.9E-16 1.9E-20 130.0 26.1 240 116-397 6-255 (391)
196 KOG2394 WD40 protein DMR-N9 [G 99.8 8.7E-17 1.9E-21 142.1 20.0 253 118-396 126-458 (636)
197 KOG1524 WD40 repeat-containing 99.8 4.2E-17 9.1E-22 144.0 17.2 248 108-392 7-257 (737)
198 KOG1009 Chromatin assembly com 99.7 3.9E-17 8.5E-22 139.6 14.6 165 166-334 13-196 (434)
199 KOG1445 Tumor-specific antigen 99.7 1.5E-16 3.3E-21 143.2 18.6 221 158-392 71-295 (1012)
200 KOG1334 WD40 repeat protein [G 99.7 3.9E-17 8.5E-22 142.6 14.4 260 110-390 137-466 (559)
201 KOG3881 Uncharacterized conser 99.7 1.2E-15 2.5E-20 130.1 22.8 257 112-392 52-322 (412)
202 KOG2139 WD40 repeat protein [G 99.7 9E-16 1.9E-20 129.6 21.8 246 115-377 98-363 (445)
203 KOG0771 Prolactin regulatory e 99.7 7.6E-17 1.6E-21 138.7 15.4 198 119-334 148-355 (398)
204 KOG0642 Cell-cycle nuclear pro 99.7 1.8E-16 3.9E-21 141.0 16.1 215 109-334 338-562 (577)
205 KOG0280 Uncharacterized conser 99.7 4.1E-15 8.8E-20 122.3 21.2 268 106-392 61-335 (339)
206 KOG2321 WD40 repeat protein [G 99.7 7.4E-16 1.6E-20 137.4 18.1 262 104-390 40-343 (703)
207 KOG1272 WD40-repeat-containing 99.7 1.4E-16 3.1E-21 138.4 11.9 230 117-388 131-360 (545)
208 PRK01742 tolB translocation pr 99.7 5.2E-15 1.1E-19 138.2 22.1 212 137-389 183-400 (429)
209 PRK11028 6-phosphogluconolacto 99.7 9.1E-14 2E-18 125.8 27.6 239 130-391 4-259 (330)
210 KOG2139 WD40 repeat protein [G 99.7 1.5E-13 3.2E-18 116.4 26.2 208 114-334 139-384 (445)
211 PRK01742 tolB translocation pr 99.7 1.2E-14 2.5E-19 135.8 21.3 222 111-370 199-426 (429)
212 KOG0322 G-protein beta subunit 99.7 1.6E-15 3.5E-20 122.8 13.1 162 167-332 151-322 (323)
213 KOG2394 WD40 protein DMR-N9 [G 99.7 3.8E-15 8.2E-20 131.9 15.5 198 130-334 187-453 (636)
214 KOG1538 Uncharacterized conser 99.6 4.3E-14 9.3E-19 128.4 20.0 213 111-334 49-294 (1081)
215 KOG1963 WD40 repeat protein [G 99.6 8.3E-14 1.8E-18 130.4 22.1 247 116-393 17-325 (792)
216 KOG2110 Uncharacterized conser 99.6 1.8E-12 4E-17 110.1 27.9 196 118-336 49-251 (391)
217 KOG3881 Uncharacterized conser 99.6 3.8E-14 8.1E-19 121.1 17.9 209 115-334 105-321 (412)
218 PF10282 Lactonase: Lactonase, 99.6 4.8E-12 1E-16 114.8 33.0 302 64-397 2-331 (345)
219 PF08662 eIF2A: Eukaryotic tra 99.6 6.4E-14 1.4E-18 115.4 18.6 157 219-396 9-185 (194)
220 PRK05137 tolB translocation pr 99.6 6.1E-13 1.3E-17 124.7 27.4 220 138-394 182-416 (435)
221 PRK03629 tolB translocation pr 99.6 9.8E-13 2.1E-17 122.6 28.0 218 139-394 180-410 (429)
222 KOG0309 Conserved WD40 repeat- 99.6 9.1E-15 2E-19 134.1 13.8 278 104-395 13-344 (1081)
223 PRK04922 tolB translocation pr 99.6 3.9E-13 8.4E-18 125.9 25.1 220 138-393 184-414 (433)
224 KOG2111 Uncharacterized conser 99.6 1E-12 2.3E-17 109.5 24.4 235 119-394 9-260 (346)
225 PRK02889 tolB translocation pr 99.6 3.5E-13 7.5E-18 125.8 24.5 219 138-391 176-404 (427)
226 KOG1354 Serine/threonine prote 99.6 7.2E-14 1.6E-18 117.5 17.4 273 115-397 25-366 (433)
227 KOG0644 Uncharacterized conser 99.6 5.7E-15 1.2E-19 137.1 11.0 244 110-392 227-470 (1113)
228 KOG1240 Protein kinase contain 99.6 1.8E-13 3.9E-18 132.3 21.1 221 157-394 1039-1277(1431)
229 KOG0280 Uncharacterized conser 99.6 3.5E-13 7.7E-18 111.1 19.3 239 136-395 44-289 (339)
230 KOG1272 WD40-repeat-containing 99.6 1.1E-14 2.3E-19 126.9 10.5 250 107-392 162-411 (545)
231 PRK03629 tolB translocation pr 99.6 1.3E-12 2.8E-17 121.8 24.6 220 112-370 195-428 (429)
232 PRK04922 tolB translocation pr 99.6 1.2E-12 2.6E-17 122.6 23.7 221 111-369 199-432 (433)
233 KOG1354 Serine/threonine prote 99.6 2.9E-13 6.3E-18 113.9 17.2 275 103-387 72-431 (433)
234 PF08662 eIF2A: Eukaryotic tra 99.6 5.3E-13 1.1E-17 110.0 17.9 152 170-334 9-180 (194)
235 KOG4497 Uncharacterized conser 99.5 1.6E-12 3.6E-17 108.8 19.7 244 115-393 48-394 (447)
236 PRK02889 tolB translocation pr 99.5 2.4E-12 5.2E-17 120.2 22.8 226 112-370 192-425 (427)
237 PRK05137 tolB translocation pr 99.5 1.5E-11 3.2E-16 115.4 27.5 201 111-334 197-413 (435)
238 KOG2111 Uncharacterized conser 99.5 6.1E-11 1.3E-15 99.1 27.3 168 107-292 86-259 (346)
239 KOG4547 WD40 repeat-containing 99.5 6.8E-12 1.5E-16 113.0 21.9 198 125-336 2-223 (541)
240 PF02239 Cytochrom_D1: Cytochr 99.5 2.9E-11 6.4E-16 109.6 25.8 264 106-395 26-352 (369)
241 KOG0309 Conserved WD40 repeat- 99.5 3.2E-13 6.9E-18 124.2 12.7 266 25-334 55-340 (1081)
242 KOG1334 WD40 repeat protein [G 99.5 6.6E-13 1.4E-17 116.6 13.5 235 156-394 132-428 (559)
243 KOG4547 WD40 repeat-containing 99.5 4.9E-12 1.1E-16 113.9 18.7 193 181-395 7-225 (541)
244 KOG4714 Nucleoporin [Nuclear s 99.5 1.8E-12 4E-17 105.1 14.4 207 118-334 39-255 (319)
245 KOG4497 Uncharacterized conser 99.5 3.9E-11 8.4E-16 100.7 22.2 231 114-383 90-425 (447)
246 KOG0974 WD-repeat protein WDR6 99.5 4.6E-12 1E-16 121.0 18.3 205 169-397 90-295 (967)
247 COG2706 3-carboxymuconate cycl 99.5 1.2E-09 2.5E-14 93.5 30.8 294 62-391 3-322 (346)
248 PRK04792 tolB translocation pr 99.4 1.1E-10 2.5E-15 109.3 27.0 218 139-392 199-427 (448)
249 PF02239 Cytochrom_D1: Cytochr 99.4 9.8E-11 2.1E-15 106.2 25.5 244 131-392 9-304 (369)
250 PRK04792 tolB translocation pr 99.4 4.8E-11 1E-15 111.8 24.0 224 112-370 214-447 (448)
251 TIGR02800 propeller_TolB tol-p 99.4 1.2E-10 2.5E-15 109.3 26.4 218 138-392 170-399 (417)
252 PRK01029 tolB translocation pr 99.4 1.9E-10 4.1E-15 107.0 26.6 226 138-394 165-407 (428)
253 KOG1409 Uncharacterized conser 99.4 4.3E-11 9.3E-16 101.0 19.8 204 114-335 67-272 (404)
254 PRK00178 tolB translocation pr 99.4 4.2E-10 9.1E-15 105.7 28.9 224 111-370 194-428 (430)
255 PRK00178 tolB translocation pr 99.4 1.3E-10 2.7E-15 109.2 25.2 218 139-392 180-408 (430)
256 TIGR02800 propeller_TolB tol-p 99.4 8.9E-11 1.9E-15 110.0 24.1 200 111-332 185-396 (417)
257 KOG1064 RAVE (regulator of V-A 99.4 2.8E-12 6E-17 128.4 12.9 189 114-335 2207-2400(2439)
258 KOG2315 Predicted translation 99.4 1.7E-10 3.6E-15 103.5 22.4 242 119-395 129-395 (566)
259 KOG1409 Uncharacterized conser 99.4 5.8E-11 1.3E-15 100.3 18.1 256 109-394 18-274 (404)
260 PRK01029 tolB translocation pr 99.4 9.6E-10 2.1E-14 102.3 27.6 206 114-334 183-404 (428)
261 KOG2321 WD40 repeat protein [G 99.4 5.5E-11 1.2E-15 106.8 18.2 208 116-338 134-348 (703)
262 COG5170 CDC55 Serine/threonine 99.3 7E-11 1.5E-15 98.5 14.5 270 115-394 26-371 (460)
263 PLN02919 haloacid dehalogenase 99.3 5.2E-09 1.1E-13 107.2 30.3 266 119-394 571-892 (1057)
264 PF10282 Lactonase: Lactonase, 99.3 9.1E-09 2E-13 93.4 28.1 235 138-390 13-275 (345)
265 KOG2041 WD40 repeat protein [G 99.3 1.8E-10 3.9E-15 106.2 16.8 255 113-394 12-301 (1189)
266 KOG0974 WD-repeat protein WDR6 99.3 4.8E-10 1E-14 107.5 18.2 195 118-336 90-291 (967)
267 KOG2314 Translation initiation 99.2 1.6E-09 3.4E-14 97.3 19.9 259 104-396 239-579 (698)
268 KOG4532 WD40-like repeat conta 99.2 4.7E-09 1E-13 86.0 20.5 247 119-391 71-332 (344)
269 KOG1064 RAVE (regulator of V-A 99.2 1.4E-10 3.1E-15 116.5 12.2 196 161-393 2203-2401(2439)
270 KOG2315 Predicted translation 99.2 1.4E-08 3.1E-13 91.4 22.0 208 106-334 156-391 (566)
271 KOG1008 Uncharacterized conser 99.2 3.6E-11 7.7E-16 109.5 5.7 211 116-336 57-278 (783)
272 KOG2314 Translation initiation 99.1 1.2E-08 2.5E-13 91.8 20.7 242 118-391 213-526 (698)
273 KOG4190 Uncharacterized conser 99.1 2.4E-10 5.2E-15 102.5 10.1 218 104-334 724-949 (1034)
274 KOG1912 WD40 repeat protein [G 99.1 1.8E-08 3.9E-13 94.1 21.5 246 114-391 14-305 (1062)
275 TIGR02658 TTQ_MADH_Hv methylam 99.1 4.5E-07 9.7E-12 80.8 29.3 251 107-394 38-334 (352)
276 COG2706 3-carboxymuconate cycl 99.1 2.2E-07 4.7E-12 79.9 25.9 240 137-391 15-275 (346)
277 PF04762 IKI3: IKI3 family; I 99.1 1.2E-07 2.6E-12 95.6 26.7 265 114-392 119-458 (928)
278 KOG4714 Nucleoporin [Nuclear s 99.1 4.3E-09 9.4E-14 85.9 13.3 146 130-290 103-255 (319)
279 KOG2695 WD40 repeat protein [G 99.1 6.4E-10 1.4E-14 94.2 8.7 154 232-401 228-387 (425)
280 PF04762 IKI3: IKI3 family; I 99.1 1.3E-07 2.8E-12 95.4 26.5 252 114-390 74-379 (928)
281 PF15492 Nbas_N: Neuroblastoma 99.1 7.3E-07 1.6E-11 74.5 26.1 237 121-395 3-264 (282)
282 KOG2041 WD40 repeat protein [G 99.1 4.2E-08 9.2E-13 91.0 20.5 243 111-390 67-337 (1189)
283 KOG3914 WD repeat protein WDR4 99.0 5.8E-09 1.3E-13 90.2 13.9 160 171-338 67-228 (390)
284 KOG4532 WD40-like repeat conta 99.0 5.7E-08 1.2E-12 79.8 18.9 195 181-392 86-284 (344)
285 COG5354 Uncharacterized protei 99.0 1.4E-07 3.1E-12 84.2 22.7 245 111-392 68-350 (561)
286 COG4946 Uncharacterized protei 99.0 6.8E-07 1.5E-11 79.4 26.6 149 123-292 327-480 (668)
287 PRK04043 tolB translocation pr 99.0 3.2E-07 7E-12 85.0 25.9 197 168-392 189-402 (419)
288 KOG4190 Uncharacterized conser 99.0 8.7E-10 1.9E-14 98.9 8.2 215 159-394 728-952 (1034)
289 PRK04043 tolB translocation pr 99.0 3.7E-07 8.1E-12 84.6 25.8 196 116-333 188-400 (419)
290 PF08450 SGL: SMP-30/Gluconola 99.0 2.1E-06 4.6E-11 74.2 29.0 224 120-379 4-245 (246)
291 COG5170 CDC55 Serine/threonine 99.0 4E-09 8.7E-14 88.2 10.9 223 104-334 74-368 (460)
292 KOG0882 Cyclophilin-related pe 99.0 9.9E-09 2.2E-13 90.0 12.7 228 165-401 8-242 (558)
293 KOG3914 WD repeat protein WDR4 99.0 1.5E-08 3.3E-13 87.7 13.5 159 219-395 66-228 (390)
294 PF15492 Nbas_N: Neuroblastoma 99.0 7.9E-07 1.7E-11 74.2 22.4 204 117-337 45-263 (282)
295 PLN02919 haloacid dehalogenase 98.9 4.3E-07 9.4E-12 93.4 24.9 215 117-336 625-891 (1057)
296 COG4946 Uncharacterized protei 98.9 7E-07 1.5E-11 79.3 22.3 193 126-334 277-478 (668)
297 KOG1275 PAB-dependent poly(A) 98.9 3.9E-08 8.4E-13 93.6 15.3 186 180-390 148-342 (1118)
298 KOG1275 PAB-dependent poly(A) 98.8 1.6E-07 3.4E-12 89.6 16.3 183 128-332 147-341 (1118)
299 KOG0882 Cyclophilin-related pe 98.8 1.2E-07 2.6E-12 83.4 13.7 268 110-394 4-309 (558)
300 KOG1645 RING-finger-containing 98.8 1.1E-06 2.4E-11 76.5 18.6 247 113-391 191-462 (463)
301 KOG1645 RING-finger-containing 98.8 3.9E-07 8.4E-12 79.2 15.9 159 156-324 183-352 (463)
302 KOG2695 WD40 repeat protein [G 98.8 3.1E-08 6.6E-13 84.2 8.5 152 133-299 229-385 (425)
303 KOG1912 WD40 repeat protein [G 98.8 5E-07 1.1E-11 84.8 17.0 269 108-394 47-368 (1062)
304 PF07433 DUF1513: Protein of u 98.8 1.7E-05 3.8E-10 68.4 25.1 234 116-384 5-279 (305)
305 KOG2114 Vacuolar assembly/sort 98.7 2.7E-06 5.9E-11 81.0 20.5 198 123-334 31-244 (933)
306 PF08450 SGL: SMP-30/Gluconola 98.7 2E-05 4.4E-10 68.0 23.2 199 171-392 4-215 (246)
307 KOG1008 Uncharacterized conser 98.7 9E-09 2E-13 94.2 1.9 207 167-390 57-275 (783)
308 KOG1920 IkappaB kinase complex 98.6 2E-05 4.3E-10 78.1 24.5 206 116-336 69-325 (1265)
309 KOG2066 Vacuolar assembly/sort 98.6 2E-06 4.3E-11 81.3 17.1 183 115-333 39-233 (846)
310 COG5354 Uncharacterized protei 98.6 6.6E-06 1.4E-10 73.9 19.4 242 114-393 31-309 (561)
311 PF00400 WD40: WD domain, G-be 98.6 1.3E-07 2.8E-12 55.6 6.1 38 350-388 2-39 (39)
312 PF00400 WD40: WD domain, G-be 98.6 8.5E-08 1.8E-12 56.4 4.9 37 158-195 3-39 (39)
313 PF11768 DUF3312: Protein of u 98.6 0.00055 1.2E-08 63.4 33.2 170 218-394 208-404 (545)
314 KOG2114 Vacuolar assembly/sort 98.5 1.4E-05 3.1E-10 76.2 19.8 195 173-392 30-245 (933)
315 TIGR02658 TTQ_MADH_Hv methylam 98.5 0.00024 5.2E-09 63.6 26.6 200 119-334 108-331 (352)
316 KOG1832 HIV-1 Vpr-binding prot 98.5 8.1E-08 1.8E-12 91.2 4.5 198 105-335 1090-1293(1516)
317 KOG2066 Vacuolar assembly/sort 98.5 1.3E-05 2.8E-10 76.0 18.3 143 126-290 82-234 (846)
318 PF11768 DUF3312: Protein of u 98.5 9.3E-06 2E-10 74.7 16.9 80 108-199 252-331 (545)
319 PF06977 SdiA-regulated: SdiA- 98.4 0.00044 9.5E-09 58.9 23.8 204 113-330 19-247 (248)
320 PF07433 DUF1513: Protein of u 98.3 0.00031 6.7E-09 60.8 21.3 212 168-398 6-255 (305)
321 KOG1920 IkappaB kinase complex 98.3 0.00022 4.7E-09 71.1 22.2 203 166-393 68-325 (1265)
322 TIGR03300 assembly_YfgL outer 98.3 0.00039 8.5E-09 64.3 23.3 227 129-394 106-342 (377)
323 PF13360 PQQ_2: PQQ-like domai 98.3 0.00055 1.2E-08 58.7 22.5 183 178-394 36-234 (238)
324 PF08553 VID27: VID27 cytoplas 98.3 0.00017 3.7E-09 70.7 21.0 137 186-333 501-647 (794)
325 PF08596 Lgl_C: Lethal giant l 98.3 8.2E-05 1.8E-09 68.1 17.8 246 117-379 3-325 (395)
326 TIGR03300 assembly_YfgL outer 98.3 0.00043 9.3E-09 64.0 22.8 220 130-387 147-376 (377)
327 KOG3617 WD40 and TPR repeat-co 98.2 2.7E-05 5.7E-10 74.4 13.7 72 117-198 61-132 (1416)
328 PF08553 VID27: VID27 cytoplas 98.2 6.6E-05 1.4E-09 73.5 16.7 146 226-390 491-647 (794)
329 COG0823 TolB Periplasmic compo 98.2 0.00015 3.3E-09 67.1 17.6 163 162-334 188-359 (425)
330 KOG3617 WD40 and TPR repeat-co 98.0 0.00029 6.3E-09 67.6 15.8 110 118-246 18-131 (1416)
331 KOG3621 WD40 repeat-containing 98.0 0.00041 8.9E-09 65.3 15.8 142 116-267 34-179 (726)
332 KOG1832 HIV-1 Vpr-binding prot 98.0 1.5E-05 3.3E-10 76.4 6.5 166 205-392 1091-1257(1516)
333 KOG3621 WD40 repeat-containing 98.0 0.00077 1.7E-08 63.5 17.4 124 115-249 76-200 (726)
334 PF06977 SdiA-regulated: SdiA- 97.9 0.0096 2.1E-07 50.8 24.2 204 161-387 16-247 (248)
335 COG0823 TolB Periplasmic compo 97.9 0.00048 1E-08 63.8 15.4 163 215-393 192-361 (425)
336 PF04841 Vps16_N: Vps16, N-ter 97.9 0.018 3.9E-07 53.6 25.6 174 139-334 62-247 (410)
337 PRK02888 nitrous-oxide reducta 97.9 0.0035 7.6E-08 59.7 20.7 151 236-392 213-406 (635)
338 PF04053 Coatomer_WDAD: Coatom 97.9 0.0046 9.9E-08 57.7 21.0 226 111-392 28-264 (443)
339 PF08596 Lgl_C: Lethal giant l 97.9 0.00093 2E-08 61.3 15.8 213 106-322 76-325 (395)
340 PF03178 CPSF_A: CPSF A subuni 97.8 0.0071 1.5E-07 54.5 21.4 193 180-387 43-262 (321)
341 COG3386 Gluconolactonase [Carb 97.8 0.012 2.7E-07 52.0 21.7 227 122-381 31-277 (307)
342 KOG4640 Anaphase-promoting com 97.8 0.00012 2.5E-09 68.0 8.8 95 215-312 20-115 (665)
343 PF00930 DPPIV_N: Dipeptidyl p 97.8 0.013 2.8E-07 53.6 21.8 234 118-381 103-349 (353)
344 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0027 5.9E-08 46.0 13.3 102 169-284 2-109 (111)
345 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0023 5E-08 46.3 12.9 102 118-241 2-109 (111)
346 PF04053 Coatomer_WDAD: Coatom 97.7 0.0046 1E-07 57.6 18.5 170 139-334 3-174 (443)
347 COG3391 Uncharacterized conser 97.7 0.043 9.4E-07 50.7 27.3 246 116-393 31-286 (381)
348 PF13360 PQQ_2: PQQ-like domai 97.7 0.011 2.3E-07 50.7 18.8 183 130-334 38-231 (238)
349 PRK11138 outer membrane biogen 97.6 0.018 3.9E-07 53.6 21.5 227 130-389 162-393 (394)
350 PRK11138 outer membrane biogen 97.6 0.023 5E-07 52.8 21.4 223 130-394 122-357 (394)
351 KOG2395 Protein involved in va 97.6 0.0014 3E-08 59.9 12.1 142 229-389 347-499 (644)
352 KOG2395 Protein involved in va 97.6 0.0035 7.7E-08 57.4 14.4 141 181-334 348-501 (644)
353 KOG4640 Anaphase-promoting com 97.5 0.00065 1.4E-08 63.2 9.4 75 258-336 20-95 (665)
354 PF02897 Peptidase_S9_N: Proly 97.5 0.095 2.1E-06 49.1 25.4 245 118-394 126-408 (414)
355 smart00320 WD40 WD40 repeats. 97.5 0.00026 5.7E-09 40.4 4.5 36 159-195 5-40 (40)
356 KOG4649 PQQ (pyrrolo-quinoline 97.5 0.046 1E-06 45.8 18.7 141 176-328 20-160 (354)
357 smart00320 WD40 WD40 repeats. 97.5 0.00045 9.9E-09 39.3 5.6 37 351-388 4-40 (40)
358 PF00930 DPPIV_N: Dipeptidyl p 97.5 0.028 6.1E-07 51.4 19.8 228 137-390 22-313 (353)
359 COG3490 Uncharacterized protei 97.4 0.057 1.2E-06 45.9 22.3 212 109-334 61-311 (366)
360 PRK02888 nitrous-oxide reducta 97.4 0.0032 7E-08 59.9 13.1 95 237-334 295-405 (635)
361 PF03178 CPSF_A: CPSF A subuni 97.4 0.034 7.3E-07 50.1 19.5 195 62-286 43-262 (321)
362 KOG4441 Proteins containing BT 97.4 0.028 6E-07 54.6 19.6 235 129-399 286-555 (571)
363 COG3391 Uncharacterized conser 97.4 0.082 1.8E-06 48.8 21.5 201 116-334 74-284 (381)
364 PF14583 Pectate_lyase22: Olig 97.3 0.11 2.3E-06 46.9 20.5 141 122-279 42-208 (386)
365 KOG2444 WD40 repeat protein [G 97.2 0.0012 2.7E-08 53.8 7.0 141 230-391 32-178 (238)
366 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0017 3.6E-08 39.3 5.5 38 109-147 5-42 (47)
367 COG3386 Gluconolactonase [Carb 97.2 0.15 3.3E-06 45.2 19.9 201 171-392 29-245 (307)
368 KOG2079 Vacuolar assembly/sort 97.2 0.022 4.8E-07 56.8 15.7 100 129-245 100-202 (1206)
369 PF04841 Vps16_N: Vps16, N-ter 97.1 0.25 5.5E-06 46.0 26.6 189 110-314 76-271 (410)
370 KOG2079 Vacuolar assembly/sort 97.0 0.0052 1.1E-07 61.0 10.0 102 273-389 101-202 (1206)
371 PHA02713 hypothetical protein; 97.0 0.084 1.8E-06 51.4 18.4 189 181-397 306-540 (557)
372 KOG4649 PQQ (pyrrolo-quinoline 96.9 0.13 2.8E-06 43.3 15.4 105 225-334 20-124 (354)
373 KOG3630 Nuclear pore complex, 96.8 0.036 7.8E-07 55.7 14.0 151 167-318 101-259 (1405)
374 PF06433 Me-amine-dh_H: Methyl 96.8 0.35 7.6E-06 42.9 19.1 249 120-397 40-327 (342)
375 PHA02713 hypothetical protein; 96.7 0.06 1.3E-06 52.4 15.2 184 129-334 305-534 (557)
376 PF15390 DUF4613: Domain of un 96.7 0.044 9.6E-07 51.3 13.2 152 167-334 20-187 (671)
377 PRK13616 lipoprotein LpqB; Pro 96.7 0.38 8.2E-06 47.0 20.3 191 165-385 348-563 (591)
378 COG3490 Uncharacterized protei 96.7 0.056 1.2E-06 46.0 12.5 111 217-330 69-186 (366)
379 PF15390 DUF4613: Domain of un 96.7 0.18 3.8E-06 47.6 16.8 129 110-248 51-188 (671)
380 KOG2444 WD40 repeat protein [G 96.6 0.0045 9.7E-08 50.7 5.4 104 181-290 72-178 (238)
381 KOG1897 Damage-specific DNA bi 96.6 0.92 2E-05 45.6 23.5 208 103-334 703-943 (1096)
382 COG3204 Uncharacterized protei 96.6 0.39 8.6E-06 41.3 17.9 169 112-290 82-264 (316)
383 PF02897 Peptidase_S9_N: Proly 96.6 0.69 1.5E-05 43.4 22.7 199 169-390 126-357 (414)
384 PF05694 SBP56: 56kDa selenium 96.4 0.73 1.6E-05 42.3 23.1 199 127-337 87-346 (461)
385 PF14655 RAB3GAP2_N: Rab3 GTPa 96.4 0.78 1.7E-05 42.4 22.2 95 171-267 6-117 (415)
386 PF12894 Apc4_WD40: Anaphase-p 96.4 0.015 3.3E-07 35.1 5.5 33 359-392 11-43 (47)
387 PF00780 CNH: CNH domain; Int 96.4 0.62 1.3E-05 40.9 25.1 147 129-292 8-168 (275)
388 PF05694 SBP56: 56kDa selenium 96.4 0.25 5.4E-06 45.2 15.2 207 181-393 89-345 (461)
389 KOG3630 Nuclear pore complex, 96.3 0.084 1.8E-06 53.3 12.9 146 217-376 102-260 (1405)
390 COG3204 Uncharacterized protei 96.3 0.4 8.7E-06 41.3 15.1 174 213-393 83-266 (316)
391 PF10647 Gmad1: Lipoprotein Lp 96.2 0.71 1.5E-05 39.9 17.6 167 217-391 25-198 (253)
392 PRK13616 lipoprotein LpqB; Pro 96.2 0.85 1.9E-05 44.6 19.2 185 116-328 350-563 (591)
393 KOG4499 Ca2+-binding protein R 96.0 0.42 9.1E-06 39.7 13.6 100 169-269 160-264 (310)
394 cd00216 PQQ_DH Dehydrogenases 96.0 1.5 3.3E-05 42.1 23.4 151 181-337 112-323 (488)
395 PF00780 CNH: CNH domain; Int 96.0 1 2.2E-05 39.5 17.4 149 227-394 6-169 (275)
396 KOG4441 Proteins containing BT 95.9 0.32 6.9E-06 47.4 14.6 188 115-326 322-534 (571)
397 PF12234 Rav1p_C: RAVE protein 95.6 0.34 7.4E-06 47.0 13.6 122 261-390 32-156 (631)
398 PHA03098 kelch-like protein; P 95.6 0.6 1.3E-05 45.5 15.8 152 227-399 342-520 (534)
399 cd00216 PQQ_DH Dehydrogenases 95.6 2 4.4E-05 41.3 19.0 108 181-293 63-187 (488)
400 PF06433 Me-amine-dh_H: Methyl 95.5 0.39 8.5E-06 42.6 12.5 157 175-335 143-322 (342)
401 PHA03098 kelch-like protein; P 95.5 1.3 2.8E-05 43.2 17.6 184 129-334 296-512 (534)
402 PF10313 DUF2415: Uncharacteri 95.4 0.063 1.4E-06 31.4 4.9 32 216-247 1-34 (43)
403 PF12234 Rav1p_C: RAVE protein 95.2 1.1 2.5E-05 43.6 15.6 113 217-334 31-157 (631)
404 COG5167 VID27 Protein involved 95.2 0.79 1.7E-05 42.6 13.5 151 220-390 471-632 (776)
405 KOG2377 Uncharacterized conser 95.2 0.8 1.7E-05 41.9 13.3 144 170-322 26-173 (657)
406 PF08728 CRT10: CRT10; InterP 94.8 0.46 1E-05 46.7 11.6 126 115-245 100-245 (717)
407 PF14655 RAB3GAP2_N: Rab3 GTPa 94.7 3.6 7.8E-05 38.2 22.8 34 302-336 307-340 (415)
408 PF14727 PHTB1_N: PTHB1 N-term 94.7 3.7 7.9E-05 38.2 27.7 157 125-289 34-204 (418)
409 PF10313 DUF2415: Uncharacteri 94.7 0.13 2.9E-06 30.1 4.8 32 116-147 1-34 (43)
410 PF07995 GSDH: Glucose / Sorbo 94.6 3.3 7.3E-05 37.4 25.8 249 117-385 3-330 (331)
411 COG5167 VID27 Protein involved 94.5 2.9 6.4E-05 39.0 15.4 139 182-334 483-633 (776)
412 KOG2247 WD40 repeat-containing 94.5 0.0069 1.5E-07 55.1 -1.1 147 118-284 37-183 (615)
413 PHA02790 Kelch-like protein; P 94.3 3.3 7.1E-05 39.7 16.4 147 227-397 318-477 (480)
414 PF14870 PSII_BNR: Photosynthe 94.3 3.6 7.9E-05 36.4 18.3 154 163-330 141-301 (302)
415 PF08728 CRT10: CRT10; InterP 94.2 2.7 5.8E-05 41.6 15.4 149 181-332 51-245 (717)
416 KOG2377 Uncharacterized conser 94.2 1.1 2.5E-05 41.0 11.9 155 219-392 26-187 (657)
417 PF05096 Glu_cyclase_2: Glutam 94.1 3.4 7.3E-05 35.5 17.7 134 129-277 101-249 (264)
418 PHA02790 Kelch-like protein; P 94.1 3.7 8.1E-05 39.3 16.4 141 129-291 273-425 (480)
419 KOG2247 WD40 repeat-containing 93.8 0.011 2.4E-07 53.9 -1.2 145 169-326 37-181 (615)
420 PF10168 Nup88: Nuclear pore c 93.8 3.3 7.2E-05 41.5 15.5 81 216-298 85-188 (717)
421 KOG4499 Ca2+-binding protein R 93.6 3.8 8.3E-05 34.3 17.9 95 217-313 159-264 (310)
422 KOG1983 Tomosyn and related SN 93.4 3.4 7.3E-05 43.2 15.4 40 107-147 27-66 (993)
423 PF10168 Nup88: Nuclear pore c 93.4 9.8 0.00021 38.3 24.7 82 166-249 84-182 (717)
424 PRK10115 protease 2; Provision 93.4 9.9 0.00021 38.3 30.4 198 116-333 127-344 (686)
425 PF14870 PSII_BNR: Photosynthe 93.3 5.5 0.00012 35.3 24.0 242 112-386 13-257 (302)
426 TIGR02604 Piru_Ver_Nterm putat 93.2 5.3 0.00011 36.8 15.2 146 168-322 15-202 (367)
427 PF14583 Pectate_lyase22: Olig 93.0 6 0.00013 36.1 14.5 154 172-336 41-225 (386)
428 KOG2280 Vacuolar assembly/sort 93.0 10 0.00022 37.4 19.0 198 115-334 43-247 (829)
429 KOG4460 Nuclear pore complex, 92.9 1.6 3.5E-05 40.8 10.8 84 304-392 105-200 (741)
430 PF05096 Glu_cyclase_2: Glutam 92.8 5.9 0.00013 34.1 20.7 194 106-322 33-250 (264)
431 PF12657 TFIIIC_delta: Transcr 92.6 1.7 3.7E-05 35.1 9.8 32 361-392 87-123 (173)
432 PF14727 PHTB1_N: PTHB1 N-term 92.5 9 0.0002 35.7 25.2 276 17-334 49-361 (418)
433 PRK10115 protease 2; Provision 92.4 13 0.00029 37.4 24.3 200 168-390 128-344 (686)
434 PF12657 TFIIIC_delta: Transcr 92.3 1.6 3.4E-05 35.3 9.4 31 168-198 87-122 (173)
435 PF10647 Gmad1: Lipoprotein Lp 91.8 7.8 0.00017 33.5 20.0 148 117-280 25-186 (253)
436 PF14781 BBS2_N: Ciliary BBSom 91.8 4.5 9.8E-05 30.7 13.0 119 119-248 2-127 (136)
437 KOG1916 Nuclear protein, conta 91.8 0.6 1.3E-05 46.4 7.1 171 106-290 171-375 (1283)
438 KOG1916 Nuclear protein, conta 91.8 0.27 5.9E-06 48.6 4.9 122 138-270 111-236 (1283)
439 PF14761 HPS3_N: Hermansky-Pud 90.7 8.6 0.00019 31.9 13.8 102 229-334 29-164 (215)
440 PF14761 HPS3_N: Hermansky-Pud 90.7 8.7 0.00019 31.8 12.4 110 129-248 29-165 (215)
441 PF07569 Hira: TUP1-like enhan 90.6 1.7 3.6E-05 36.6 8.1 64 268-334 20-96 (219)
442 KOG4460 Nuclear pore complex, 90.5 5.5 0.00012 37.4 11.6 76 260-336 105-201 (741)
443 KOG1900 Nuclear pore complex, 90.4 5.4 0.00012 41.7 12.5 152 234-391 95-273 (1311)
444 TIGR03118 PEPCTERM_chp_1 conse 90.3 12 0.00026 32.9 20.7 207 168-394 24-283 (336)
445 PF07676 PD40: WD40-like Beta 90.2 1.6 3.4E-05 24.9 5.5 29 359-387 8-38 (39)
446 PF07676 PD40: WD40-like Beta 89.9 1.7 3.7E-05 24.8 5.4 32 299-330 5-38 (39)
447 PF07569 Hira: TUP1-like enhan 89.3 3.3 7.1E-05 34.9 8.8 62 227-290 21-96 (219)
448 PF13449 Phytase-like: Esteras 89.0 17 0.00037 32.8 21.6 212 167-383 20-311 (326)
449 KOG1900 Nuclear pore complex, 88.8 8.3 0.00018 40.5 12.4 139 186-336 96-275 (1311)
450 PF14781 BBS2_N: Ciliary BBSom 88.5 9.2 0.0002 29.0 12.0 114 172-290 4-126 (136)
451 TIGR03075 PQQ_enz_alc_DH PQQ-d 86.9 32 0.00069 33.5 22.8 55 239-293 272-337 (527)
452 TIGR02604 Piru_Ver_Nterm putat 86.3 27 0.00059 32.1 25.5 152 116-278 14-202 (367)
453 COG4590 ABC-type uncharacteriz 86.2 9.1 0.0002 35.4 9.9 166 115-292 220-389 (733)
454 PF07995 GSDH: Glucose / Sorbo 85.3 14 0.00029 33.5 11.0 107 169-278 4-133 (331)
455 PF11635 Med16: Mediator compl 85.1 48 0.001 33.9 20.9 80 303-385 260-345 (753)
456 PF10214 Rrn6: RNA polymerase 84.6 52 0.0011 33.9 26.9 168 164-334 77-277 (765)
457 PLN00033 photosystem II stabil 84.4 35 0.00076 31.8 17.7 112 257-387 279-396 (398)
458 PF12768 Rax2: Cortical protei 83.8 30 0.00064 30.4 13.1 116 189-312 16-146 (281)
459 TIGR02276 beta_rpt_yvtn 40-res 83.4 3.6 7.8E-05 23.7 4.5 32 225-256 1-32 (42)
460 COG5290 IkappaB kinase complex 83.0 49 0.0011 33.3 13.7 71 261-334 249-325 (1243)
461 PRK13684 Ycf48-like protein; P 82.9 37 0.00079 30.8 15.9 155 215-390 172-331 (334)
462 COG4590 ABC-type uncharacteriz 82.8 13 0.00028 34.5 9.4 159 214-393 219-389 (733)
463 PF03022 MRJP: Major royal jel 82.3 35 0.00076 30.2 17.8 177 190-378 35-253 (287)
464 PF11715 Nup160: Nucleoporin N 82.2 5.3 0.00012 39.1 7.6 74 180-253 159-255 (547)
465 COG3823 Glutamine cyclotransfe 81.8 27 0.00058 29.0 9.9 130 133-278 106-248 (262)
466 PRK14131 N-acetylneuraminic ac 81.8 43 0.00094 30.9 14.7 23 227-249 84-117 (376)
467 PF03022 MRJP: Major royal jel 81.4 38 0.00081 30.0 12.0 32 360-392 186-217 (287)
468 KOG1897 Damage-specific DNA bi 81.4 70 0.0015 33.1 24.9 147 181-334 501-660 (1096)
469 TIGR03548 mutarot_permut cycli 81.3 41 0.00088 30.2 19.2 63 227-291 123-196 (323)
470 COG4257 Vgb Streptogramin lyas 80.9 37 0.0008 29.5 16.0 200 168-394 63-266 (353)
471 TIGR03606 non_repeat_PQQ dehyd 80.7 53 0.0011 31.2 19.4 55 215-270 29-90 (454)
472 KOG2280 Vacuolar assembly/sort 79.9 69 0.0015 32.0 15.2 161 116-292 84-249 (829)
473 KOG3616 Selective LIM binding 79.3 62 0.0013 32.3 13.0 94 166-271 14-110 (1636)
474 PF11635 Med16: Mediator compl 79.2 80 0.0017 32.4 20.4 68 259-328 260-345 (753)
475 TIGR02276 beta_rpt_yvtn 40-res 79.1 8.1 0.00018 22.1 5.0 31 268-299 1-31 (42)
476 TIGR03075 PQQ_enz_alc_DH PQQ-d 78.5 69 0.0015 31.2 20.8 109 181-293 71-193 (527)
477 PF10214 Rrn6: RNA polymerase 76.8 96 0.0021 32.0 28.8 177 111-291 75-278 (765)
478 PF12768 Rax2: Cortical protei 76.5 53 0.0011 28.9 14.0 94 238-334 16-124 (281)
479 PLN02193 nitrile-specifier pro 76.2 75 0.0016 30.5 16.5 63 227-292 278-354 (470)
480 PF08801 Nucleoporin_N: Nup133 76.2 61 0.0013 30.5 12.5 31 360-391 190-220 (422)
481 COG5276 Uncharacterized conser 76.1 54 0.0012 28.8 28.2 165 108-293 79-245 (370)
482 TIGR03606 non_repeat_PQQ dehyd 75.9 74 0.0016 30.2 15.8 72 105-178 19-90 (454)
483 KOG1898 Splicing factor 3b, su 75.3 1.1E+02 0.0024 32.0 14.4 107 172-289 939-1048(1205)
484 TIGR03548 mutarot_permut cycli 75.3 62 0.0013 29.1 17.8 104 227-334 72-195 (323)
485 PRK14131 N-acetylneuraminic ac 74.5 72 0.0016 29.5 19.6 12 239-250 190-201 (376)
486 PRK13684 Ycf48-like protein; P 74.3 68 0.0015 29.1 19.2 152 166-332 172-330 (334)
487 PLN02193 nitrile-specifier pro 74.2 69 0.0015 30.7 12.3 24 227-250 328-355 (470)
488 PF10395 Utp8: Utp8 family; I 72.6 1.1E+02 0.0023 30.6 17.1 165 112-291 126-307 (670)
489 PF02333 Phytase: Phytase; In 72.6 80 0.0017 29.1 18.1 154 138-293 127-294 (381)
490 COG3292 Predicted periplasmic 72.3 55 0.0012 31.6 10.5 105 215-327 164-269 (671)
491 PLN00033 photosystem II stabil 71.6 88 0.0019 29.2 17.0 107 215-330 280-396 (398)
492 PF08801 Nucleoporin_N: Nup133 71.0 94 0.002 29.2 13.8 31 303-334 190-220 (422)
493 PLN02153 epithiospecifier prot 70.7 83 0.0018 28.5 20.9 23 227-249 137-170 (341)
494 COG3823 Glutamine cyclotransfe 69.9 63 0.0014 26.9 13.9 198 105-322 33-248 (262)
495 TIGR02171 Fb_sc_TIGR02171 Fibr 69.9 47 0.001 34.1 10.1 94 229-322 320-418 (912)
496 PF02333 Phytase: Phytase; In 69.9 93 0.002 28.7 20.5 191 181-391 70-291 (381)
497 PF13449 Phytase-like: Esteras 69.3 88 0.0019 28.2 22.4 157 115-276 19-231 (326)
498 PF07250 Glyoxal_oxid_N: Glyox 69.3 73 0.0016 27.3 10.3 143 240-394 48-201 (243)
499 PF11715 Nup160: Nucleoporin N 69.2 18 0.00038 35.5 7.3 67 227-293 157-252 (547)
500 COG5276 Uncharacterized conser 69.1 81 0.0018 27.8 24.3 154 166-335 86-243 (370)
No 1
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=6.7e-76 Score=501.95 Aligned_cols=393 Identities=58% Similarity=1.025 Sum_probs=355.1
Q ss_pred hchhhhhHHhhhhhhcChhHhhhhhcCCCCCCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCC
Q 015484 8 ASLDQVEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPT 87 (406)
Q Consensus 8 ~~~~~~~~~~~~wk~~~~~ly~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~ 87 (406)
.+.+.++|||++||||+|||||++++|.|+||||+|||+|+.... . +.+|..||+++||+++++.+|+++|+++.+|.
T Consensus 11 ~~~~~i~Eey~~WKkNtp~LYDlv~th~LeWPSLt~qWlPd~~~~-~-~~~~~~~rliLGthTs~~~~n~L~iA~v~lp~ 88 (422)
T KOG0264|consen 11 LEQRQINEEYKIWKKNTPFLYDLVITHALEWPSLTVQWLPDVTKP-E-EKDFSKQRLILGTHTSGSEQNYLVIASVQLPT 88 (422)
T ss_pred hccccccchhhHHhhcCcHHHHHhhhccccccceEEEEcCCcccc-c-CCCceeEEEEEEeecCCCCccEEEEEeecCCC
Confidence 566799999999999999999999999999999999999997665 4 78899999999999999999999999999995
Q ss_pred CCCCCCCC-CCCCC---C----CCCCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc--CCCC
Q 015484 88 KDSESNVG-GKNEN---P----VIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ--DDCD 157 (406)
Q Consensus 88 ~~~~~~~~-~~~~~---~----~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~ 157 (406)
....+... .+.|. . ..+++++.+++.|.+.|++++++|+.+.++|+++..+.|+|||..+...... +.+.
T Consensus 89 ~~~~~~~~~~~~e~~e~~g~~~~~~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~ 168 (422)
T KOG0264|consen 89 DDAQFEDKHYDEERGEFGGFGAVSGKVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECR 168 (422)
T ss_pred cccccccccccccccccCCccccccceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCC
Confidence 44333311 11111 1 3568999999999999999999999999999999999999999988766553 2678
Q ss_pred CceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccC-CceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec
Q 015484 158 PDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQ-DKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD 236 (406)
Q Consensus 158 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~ 236 (406)
|...+.+|....++++|++...+.|++|+.|++|++||++.... .+.+.+...+.+|...|.+++|++.+..+|++++.
T Consensus 169 Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d 248 (422)
T KOG0264|consen 169 PDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD 248 (422)
T ss_pred CceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecC
Confidence 88899999999999999999888999999999999999988655 35567778899999999999999999999999999
Q ss_pred CCcEEEEECC--CCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCC
Q 015484 237 DCQLMIWDLR--TNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNH 314 (406)
Q Consensus 237 dg~i~i~d~~--~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~ 314 (406)
|+.+.|||+| +.+......+|...|+|++|+|.+.++||+|+.|++|.+||+|+...++..+.+|...|.++.|+|+.
T Consensus 249 d~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~ 328 (422)
T KOG0264|consen 249 DGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHN 328 (422)
T ss_pred CCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCC
Confidence 9999999999 45556667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 315 ETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 315 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
..+||+++.|+.+.|||+...+..+.....+++|++++|.+.||...|.++.|+|+.+|+|+|+++|+.++||++...++
T Consensus 329 etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~i~ 408 (422)
T KOG0264|consen 329 ETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAENIY 408 (422)
T ss_pred CceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccccc
Confidence 99999999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccc
Q 015484 395 RDDDDFLA 402 (406)
Q Consensus 395 ~~~~~~~~ 402 (406)
.+++....
T Consensus 409 ~~e~~~~~ 416 (422)
T KOG0264|consen 409 NPEDPEES 416 (422)
T ss_pred CccccCcc
Confidence 88776544
No 2
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=100.00 E-value=5.8e-44 Score=298.85 Aligned_cols=355 Identities=29% Similarity=0.556 Sum_probs=283.9
Q ss_pred hhHhhhhhcCCCCCCceEEEEecCCCCCCCCCCCce-eEEEEEeecCCCCCCCeEEEEEEeCCCCCCC--CCCCCC-CCC
Q 015484 25 PFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFA-VHKFVLGTHTSEDFPNFLMIADAVLPTKDSE--SNVGGK-NEN 100 (406)
Q Consensus 25 ~~ly~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~-~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~--~~~~~~-~~~ 100 (406)
|..|.+++.....||||+++.+|+.... . +..|. ..+++.||++++...|.|.++++.--..... ...|++ +|.
T Consensus 57 psaYe~lH~~~~gwPcLsfDVi~D~LG~-e-R~e~P~~~Ylv~gtQa~~~~~N~l~vlkl~nl~~t~~~~~gd~~~~~ed 134 (440)
T KOG0302|consen 57 PSAYEMLHNFNSGWPCLSFDVIPDRLGD-E-RTEFPHTAYLVAGTQALDAPDNELMVLKLSNLHKTRNPNDGDGEDEEED 134 (440)
T ss_pred HHHHHHhhcccCCCcccceeeecCCCCc-c-cccCchHhhhhhhhhccccccCceEEEEeeeeecccCCccCCCCCcccc
Confidence 6799999999999999999999998877 4 45555 3467889999999999999998872111111 111111 111
Q ss_pred C---CCCCeEEEEEeecCCceeEEEEcCCC-CcEEEEEeCCCeEEEEeCCCccccc--------cCCCCCceeeeCCCCC
Q 015484 101 P---VIPKVEIAQKIRVDGEVNRARCMPQK-PNLVGTKTSSCEVYVFDCAKQAEKQ--------QDDCDPDLRLKGHDKE 168 (406)
Q Consensus 101 ~---~~~~~~~~~~~~h~~~v~~i~~~p~~-~~~l~~~~~dg~i~iw~~~~~~~~~--------~~~~~~~~~~~~h~~~ 168 (406)
+ ..|.+. .+.++|.+.+++++.++.+ ..+.|+-+..|.|+||++....... .....|+.++.+|...
T Consensus 135 dedD~~P~~~-~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~E 213 (440)
T KOG0302|consen 135 DEDDRKPQIE-MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGE 213 (440)
T ss_pred chhhcccccc-ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCcc
Confidence 1 234444 5578999999999999864 4577888899999999997643322 1457889999999999
Q ss_pred eeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC
Q 015484 169 GYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN 248 (406)
Q Consensus 169 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~ 248 (406)
.++++|||...+.|++|..-+.|++|...++.- ... ...+.+|...|.+++|+|....+|++|+.||+|+|||+|.+
T Consensus 214 Gy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W--~vd-~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~ 290 (440)
T KOG0302|consen 214 GYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSW--KVD-QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSG 290 (440)
T ss_pred ceeeecccccccccccCccccceEeeeeccCce--eec-CccccccccchhhhccCCccCceEEeeecCceEEEEEecCC
Confidence 999999997766899999999999999888542 221 13456799999999999999999999999999999999988
Q ss_pred cccc--cccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC--CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCC
Q 015484 249 QTQQ--RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT--VPLHILSSHTEEVFQVEWDPNHETVLASSADD 324 (406)
Q Consensus 249 ~~~~--~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d 324 (406)
.... ..++|.+.|+.|+|+.... +||+|+.||+++|||+|+.+ .|+..++.|..+|++|.|+|.....|++++.|
T Consensus 291 ~~~~~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D 369 (440)
T KOG0302|consen 291 PKKAAVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGED 369 (440)
T ss_pred CccceeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCC
Confidence 4322 2388999999999999888 99999999999999999754 67999999999999999999988899999999
Q ss_pred CcEEEEeCCCCCcc-----cccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 325 RRLMVWDLNRIGDE-----QLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 325 g~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
.+|.|||+...... .......+-|++++|.++|.. .|..+.|+++-+.++++.+.|| +.||.
T Consensus 370 ~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQk-e~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 370 NQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQK-EVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred CcEEEEEeeccCChhhhccccccchhcCCceeEEEecchh-HhhhheeccCCCCeEEEecccc-eeEEE
Confidence 99999999764431 111223457899999998754 6999999999888899999998 56664
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.5e-44 Score=306.44 Aligned_cols=290 Identities=21% Similarity=0.311 Sum_probs=251.2
Q ss_pred hhcCCCCCCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEE
Q 015484 31 IVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQ 110 (406)
Q Consensus 31 ~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (406)
+.+.--+-|...|.|.++. ..++.|+.. ..+.+|+.. . - -.+..
T Consensus 169 ~SQ~gd~rPis~~~fS~ds------------~~laT~sws-----G~~kvW~~~------~------------~-~~~~~ 212 (459)
T KOG0272|consen 169 CSQVGDTRPISGCSFSRDS------------KHLATGSWS-----GLVKVWSVP------Q------------C-NLLQT 212 (459)
T ss_pred hhhccCCCcceeeEeecCC------------CeEEEeecC-----CceeEeecC------C------------c-ceeEE
Confidence 3334445588888887642 256667764 345555433 0 0 13456
Q ss_pred EeecCCceeEEEEcCC-CCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 111 KIRVDGEVNRARCMPQ-KPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
..+|.+.|.++.|+|. ...-+|+|+.||++++|++.+ -.++..+.+|...|..++|+|+|. +|+|++.|.
T Consensus 213 l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~--------e~~l~~l~gH~~RVs~VafHPsG~-~L~TasfD~ 283 (459)
T KOG0272|consen 213 LRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ--------ETPLQDLEGHLARVSRVAFHPSGK-FLGTASFDS 283 (459)
T ss_pred EeccccceeeEEEccCCCccceeeeccCCceeeeccCC--------CcchhhhhcchhhheeeeecCCCc-eeeeccccc
Confidence 7789999999999997 456799999999999999987 356788999999999999999999 999999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~ 269 (406)
+-++||++++... ....+|...|.+++|+| ++.++++|+.|..-+|||+|+++++..+.+|..+|.+|+|+|+
T Consensus 284 tWRlWD~~tk~El------L~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPN 356 (459)
T KOG0272|consen 284 TWRLWDLETKSEL------LLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPN 356 (459)
T ss_pred chhhcccccchhh------HhhcccccccceeEecC-CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCC
Confidence 9999999987542 44578999999999998 8999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCC
Q 015484 270 NEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (406)
|- .||||+.|++++|||+|.... +.++.+|..-|+.+.|+|...++|+|++.|++++||...+ .
T Consensus 357 Gy-~lATgs~Dnt~kVWDLR~r~~-ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~--------------~ 420 (459)
T KOG0272|consen 357 GY-HLATGSSDNTCKVWDLRMRSE-LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT--------------W 420 (459)
T ss_pred ce-EEeecCCCCcEEEeeeccccc-ceecccccchhhheEecccCCeEEEEcccCcceeeecCCC--------------c
Confidence 98 999999999999999998665 8999999999999999997667999999999999999887 5
Q ss_pred eeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 350 ELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 350 ~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
.++.++.||.+.|.++..++++. .++|++.|.++++|..
T Consensus 421 ~~~ksLaGHe~kV~s~Dis~d~~-~i~t~s~DRT~KLW~~ 459 (459)
T KOG0272|consen 421 SPLKSLAGHEGKVISLDISPDSQ-AIATSSFDRTIKLWRP 459 (459)
T ss_pred ccchhhcCCccceEEEEeccCCc-eEEEeccCceeeeccC
Confidence 78888999999999999999999 6999999999999963
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-43 Score=296.54 Aligned_cols=300 Identities=20% Similarity=0.324 Sum_probs=254.9
Q ss_pred EEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCC----CCCCCCCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCC
Q 015484 63 KFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKN----ENPVIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSC 138 (406)
Q Consensus 63 ~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg 138 (406)
-+.-++.+..++...|+ ++.|.|+++.+.+|..+ -++..-........+|..-|.|++|+|++ ..||+|+.||
T Consensus 103 pvtrCssS~~GH~e~Vl--~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDg-k~iASG~~dg 179 (480)
T KOG0271|consen 103 PVTRCSSSIAGHGEAVL--SVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDG-KKIASGSKDG 179 (480)
T ss_pred ccceeccccCCCCCcEE--EEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCc-chhhccccCC
Confidence 34456666677777766 77787788888876555 11111222233455899999999999999 5799999999
Q ss_pred eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC-----CCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeec
Q 015484 139 EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF-----KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEA 213 (406)
Q Consensus 139 ~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 213 (406)
+|++||..++.. .-..+.+|...|++++|.|- .+ +|++++.||.|+|||+..+. ++..+.+
T Consensus 180 ~I~lwdpktg~~-------~g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~------~~~~lsg 245 (480)
T KOG0271|consen 180 SIRLWDPKTGQQ-------IGRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGT------CVRTLSG 245 (480)
T ss_pred eEEEecCCCCCc-------ccccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCce------EEEEecc
Confidence 999999888533 35678999999999999873 34 89999999999999998764 3567789
Q ss_pred cCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC-----------CCC-----------
Q 015484 214 HESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP-----------YNE----------- 271 (406)
Q Consensus 214 ~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~-----------~~~----------- 271 (406)
|..+|+|+.|- +..++++|+.|++|++|+...|.+...+++|...|+.++.+. .+.
T Consensus 246 HT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~ 323 (480)
T KOG0271|consen 246 HTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKK 323 (480)
T ss_pred CccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHH
Confidence 99999999997 688999999999999999999999999999999999998872 222
Q ss_pred -------------cEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcc
Q 015484 272 -------------WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE 338 (406)
Q Consensus 272 -------------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 338 (406)
..|++|+.|.++.+|+....++|+..+.+|..-|+.+.|+|+++ ++|+++-|..|++||.++
T Consensus 324 Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r-~IASaSFDkSVkLW~g~t---- 398 (480)
T KOG0271|consen 324 ALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGR-YIASASFDKSVKLWDGRT---- 398 (480)
T ss_pred HHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCcc-EEEEeecccceeeeeCCC----
Confidence 15999999999999999988889999999999999999999998 699999999999999987
Q ss_pred cccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCCC
Q 015484 339 QLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDD 397 (406)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 397 (406)
.+.+.+++||...|+.++|+.|.+ +|+||+.|.++++|++.+..+..+
T Consensus 399 ----------Gk~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tkKl~~D 446 (480)
T KOG0271|consen 399 ----------GKFLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTKKLKQD 446 (480)
T ss_pred ----------cchhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeeeeeccc
Confidence 577888999999999999999999 899999999999999999877554
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-42 Score=291.78 Aligned_cols=315 Identities=21% Similarity=0.331 Sum_probs=260.6
Q ss_pred CCCceEEEEecCCCCCCCCCCCceeEEEE-Eee----cCCCCCCCeEEEEEEeCCCCCCCCCCCCCCC----CC-CCCCe
Q 015484 37 EWPSLTVHWVPSPPQPYSADPTFAVHKFV-LGT----HTSEDFPNFLMIADAVLPTKDSESNVGGKNE----NP-VIPKV 106 (406)
Q Consensus 37 ~~p~~~~~~~p~~~~~~~~~~~~~~~~~~-~gt----~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~----~~-~~~~~ 106 (406)
.-|.++++|.|+.....+ .+....-|+. +-| ++..++.|.+. ++...|+++.+.+|.-+. ++ .++..
T Consensus 115 ~e~Vl~~~fsp~g~~l~t-GsGD~TvR~WD~~TeTp~~t~KgH~~WVl--cvawsPDgk~iASG~~dg~I~lwdpktg~~ 191 (480)
T KOG0271|consen 115 GEAVLSVQFSPTGSRLVT-GSGDTTVRLWDLDTETPLFTCKGHKNWVL--CVAWSPDGKKIASGSKDGSIRLWDPKTGQQ 191 (480)
T ss_pred CCcEEEEEecCCCceEEe-cCCCceEEeeccCCCCcceeecCCccEEE--EEEECCCcchhhccccCCeEEEecCCCCCc
Confidence 447899999997655423 4444555655 333 34567888887 777778999998764441 11 23344
Q ss_pred EEEEEeecCCceeEEEEcCC----CCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeE
Q 015484 107 EIAQKIRVDGEVNRARCMPQ----KPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYL 182 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p~----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 182 (406)
.-....+|+..|++++|.|- ...+||+++.||.|+|||+... ..+..+.+|+.+|+|+.|- |.++|
T Consensus 192 ~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~--------~~~~~lsgHT~~VTCvrwG--G~gli 261 (480)
T KOG0271|consen 192 IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG--------TCVRTLSGHTASVTCVRWG--GEGLI 261 (480)
T ss_pred ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc--------eEEEEeccCccceEEEEEc--CCceE
Confidence 44556689999999999982 2358999999999999999873 4478899999999999996 45599
Q ss_pred EEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEee-----------CC------------------------C
Q 015484 183 VSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWH-----------LK------------------------N 227 (406)
Q Consensus 183 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~-----------p~------------------------~ 227 (406)
++|+.|++|++|+...+.. ...+++|...|+.++.+ |. +
T Consensus 262 ySgS~DrtIkvw~a~dG~~------~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~ 335 (480)
T KOG0271|consen 262 YSGSQDRTIKVWRALDGKL------CRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDS 335 (480)
T ss_pred EecCCCceEEEEEccchhH------HHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccC
Confidence 9999999999999988643 36677899999998876 21 2
Q ss_pred CCEEEEEecCCcEEEEECCCC-cccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeE
Q 015484 228 ENLFGSAGDDCQLMIWDLRTN-QTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVF 306 (406)
Q Consensus 228 ~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~ 306 (406)
+..+++|++|+++.+|+.... +++..+.+|..-|+.+.|+|++. ++|+++-|..|++||.++++. +..+.+|-..|.
T Consensus 336 ~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r-~IASaSFDkSVkLW~g~tGk~-lasfRGHv~~VY 413 (480)
T KOG0271|consen 336 GERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGR-YIASASFDKSVKLWDGRTGKF-LASFRGHVAAVY 413 (480)
T ss_pred cceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCcc-EEEEeecccceeeeeCCCcch-hhhhhhccceeE
Confidence 236999999999999998654 46788899999999999999999 999999999999999999876 899999999999
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEE
Q 015484 307 QVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQV 386 (406)
Q Consensus 307 ~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~i 386 (406)
.++|+.+.+ +|++|+.|.++++||+++ .++.+.+.||...|.++.|+|+|. .+++|+.|..+++
T Consensus 414 qvawsaDsR-LlVS~SkDsTLKvw~V~t--------------kKl~~DLpGh~DEVf~vDwspDG~-rV~sggkdkv~~l 477 (480)
T KOG0271|consen 414 QVAWSADSR-LLVSGSKDSTLKVWDVRT--------------KKLKQDLPGHADEVFAVDWSPDGQ-RVASGGKDKVLRL 477 (480)
T ss_pred EEEeccCcc-EEEEcCCCceEEEEEeee--------------eeecccCCCCCceEEEEEecCCCc-eeecCCCceEEEe
Confidence 999999997 899999999999999997 577788899999999999999999 7999999999999
Q ss_pred Ee
Q 015484 387 WQ 388 (406)
Q Consensus 387 w~ 388 (406)
|.
T Consensus 478 w~ 479 (480)
T KOG0271|consen 478 WR 479 (480)
T ss_pred ec
Confidence 95
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.6e-43 Score=298.10 Aligned_cols=251 Identities=23% Similarity=0.392 Sum_probs=229.2
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCC-CCeEEEecCCC
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFK-EGYLVSGSHDN 189 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg 189 (406)
.++-..+|..+.|++++ ..||||+.+|.++||+..+ +....++.+|...|.++.|+|.. ...|+||+.||
T Consensus 171 Q~gd~rPis~~~fS~ds-~~laT~swsG~~kvW~~~~--------~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dg 241 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDS-KHLATGSWSGLVKVWSVPQ--------CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADG 241 (459)
T ss_pred hccCCCcceeeEeecCC-CeEEEeecCCceeEeecCC--------cceeEEEeccccceeeEEEccCCCccceeeeccCC
Confidence 44567899999999999 6899999999999999988 45588999999999999999973 44899999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~ 269 (406)
++++|++++. .++..+.+|...|..++|+| ++++|++++.|.+-++||++++..+....+|...|.+++|+|+
T Consensus 242 tvklw~~~~e------~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~D 314 (459)
T KOG0272|consen 242 TVKLWKLSQE------TPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPD 314 (459)
T ss_pred ceeeeccCCC------cchhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhhHhhcccccccceeEecCC
Confidence 9999999875 24577889999999999999 8999999999999999999999998888999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCC
Q 015484 270 NEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (406)
|. ++++|+.|..-+|||+|++.+ +..+.+|..+|.+|+|+|+|. .||||+.|++++|||++. .
T Consensus 315 GS-L~~tGGlD~~~RvWDlRtgr~-im~L~gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~--------------r 377 (459)
T KOG0272|consen 315 GS-LAATGGLDSLGRVWDLRTGRC-IMFLAGHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRM--------------R 377 (459)
T ss_pred Cc-eeeccCccchhheeecccCcE-EEEecccccceeeEeECCCce-EEeecCCCCcEEEeeecc--------------c
Confidence 99 999999999999999999887 888999999999999999995 799999999999999997 4
Q ss_pred eeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 350 ELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 350 ~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
..++.+.+|.+-|+.|.|+|...++|+|++.|++++||...+...
T Consensus 378 ~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~ 422 (459)
T KOG0272|consen 378 SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSP 422 (459)
T ss_pred ccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCccc
Confidence 557888999999999999996666899999999999999887654
No 7
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.7e-41 Score=266.61 Aligned_cols=298 Identities=24% Similarity=0.417 Sum_probs=254.5
Q ss_pred CCceEEEEecCCCCCCCCCCCceeEEEEEeecCCC--CCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecC
Q 015484 38 WPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSE--DFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVD 115 (406)
Q Consensus 38 ~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~--~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 115 (406)
..-++++|.|..+ .|++++|-..- .....+.|.++.-| +.+...+.+.-.
T Consensus 9 f~GysvqfSPf~~-----------nrLavAt~q~yGl~G~G~L~ile~~~~-----------------~gi~e~~s~d~~ 60 (311)
T KOG0277|consen 9 FHGYSVQFSPFVE-----------NRLAVATAQHYGLAGNGRLFILEVTDP-----------------KGIQECQSYDTE 60 (311)
T ss_pred cccceeEeccccc-----------chhheeehhhcccccCceEEEEecCCC-----------------CCeEEEEeeecc
Confidence 5568999988543 25555553211 23456776654311 457778888889
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
..+..++|++...+.+++++.||.++|||+.. ...|+..++.|..+|+++.|++..+..++++|.||+|++|+
T Consensus 61 D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~-------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~ 133 (311)
T KOG0277|consen 61 DGLFDVAWSENHENQVIAASGDGSLRLFDLTM-------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWD 133 (311)
T ss_pred cceeEeeecCCCcceEEEEecCceEEEeccCC-------CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeec
Confidence 99999999998888999999999999999665 35689999999999999999998777899999999999999
Q ss_pred CCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEE
Q 015484 196 VSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLA 275 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~ 275 (406)
...++. +.++.+|...|...+|+|..+++|++++.||.+++||++.......+..|...+.++.|+..+.++++
T Consensus 134 ~~r~~S------v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~ 207 (311)
T KOG0277|consen 134 PNRPNS------VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLA 207 (311)
T ss_pred CCCCcc------eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEE
Confidence 887643 47789999999999999999999999999999999999986555558899999999999999998999
Q ss_pred EEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEe
Q 015484 276 TASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH 355 (406)
Q Consensus 276 ~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 355 (406)
||+.|+.|+.||+|+.+.|+..+.+|.-.|..++|+|....+|++++.|-+++|||..... .++...
T Consensus 208 Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d-------------s~~e~~ 274 (311)
T KOG0277|consen 208 TGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD-------------SAIETV 274 (311)
T ss_pred ecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch-------------hhhhhh
Confidence 9999999999999999999999999999999999999998899999999999999998632 334444
Q ss_pred cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 356 GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 356 ~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
.-|+..|..+.|++..+..+|+++.|+.++||++
T Consensus 275 ~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 275 DHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hccceEEeccccccccCceeeecccccceeeecc
Confidence 5688899999999987768999999999999986
No 8
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.2e-40 Score=299.43 Aligned_cols=264 Identities=26% Similarity=0.441 Sum_probs=232.1
Q ss_pred CCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccc-----------------------cCCCCCce
Q 015484 104 PKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQ-----------------------QDDCDPDL 160 (406)
Q Consensus 104 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~-----------------------~~~~~~~~ 160 (406)
|.+.......-...++|+.|++++ .+||.|..|..|++|.+...+.+. ........
T Consensus 367 pSic~YT~~nt~~~v~ca~fSdds-smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~ 445 (707)
T KOG0263|consen 367 PSICMYTFHNTYQGVTCAEFSDDS-SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSR 445 (707)
T ss_pred CcEEEEEEEEcCCcceeEeecCCc-chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeE
Confidence 444444444455789999999999 589999999999999998532111 01222345
Q ss_pred eeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcE
Q 015484 161 RLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQL 240 (406)
Q Consensus 161 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i 240 (406)
++.+|.++|+++.|+|+.+ +|+++|.|+++|+|.+.+. .++..+++|..+|.++.|+| .+.+||+++.|++.
T Consensus 446 ~L~GH~GPVyg~sFsPd~r-fLlScSED~svRLWsl~t~------s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tA 517 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRR-FLLSCSEDSSVRLWSLDTW------SCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTA 517 (707)
T ss_pred EeecCCCceeeeeeccccc-ceeeccCCcceeeeecccc------eeEEEecCCCcceeeEEecC-CceEEEecCCCcee
Confidence 6889999999999999988 9999999999999999874 35677889999999999999 79999999999999
Q ss_pred EEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEE
Q 015484 241 MIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLAS 320 (406)
Q Consensus 241 ~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s 320 (406)
++|......+++.+.+|...|.|++|+|+.. ++++|+.|.++++||..++.. ++.|.+|.++|.+++|+|+|+ +|++
T Consensus 518 rLWs~d~~~PlRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~-VRiF~GH~~~V~al~~Sp~Gr-~LaS 594 (707)
T KOG0263|consen 518 RLWSTDHNKPLRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGNS-VRIFTGHKGPVTALAFSPCGR-YLAS 594 (707)
T ss_pred eeeecccCCchhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCCcE-EEEecCCCCceEEEEEcCCCc-eEee
Confidence 9999999999999999999999999999998 999999999999999999876 999999999999999999998 5999
Q ss_pred EeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 321 SADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 321 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
|+.||.|.+||+.. ..++..+.+|.+.|.++.|+.+|. +||+||.|+.|++||+..-..
T Consensus 595 g~ed~~I~iWDl~~--------------~~~v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 595 GDEDGLIKIWDLAN--------------GSLVKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred cccCCcEEEEEcCC--------------CcchhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEchhhcc
Confidence 99999999999987 466777889999999999999999 899999999999999876543
No 9
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.6e-40 Score=280.79 Aligned_cols=277 Identities=19% Similarity=0.323 Sum_probs=232.0
Q ss_pred EEEeCCCCCCCCCCCCCC-CCC--CCCCeEE-EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCC
Q 015484 81 ADAVLPTKDSESNVGGKN-ENP--VIPKVEI-AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDC 156 (406)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~-~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 156 (406)
..+...++++++.+|... |++ ..-.|.. .....|..+|+++.|++++ ..+++|..+|.|++|+..-.
T Consensus 100 ~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g-~wmiSgD~gG~iKyWqpnmn-------- 170 (464)
T KOG0284|consen 100 NVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNG-TWMISGDKGGMIKYWQPNMN-------- 170 (464)
T ss_pred eeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCC-CEEEEcCCCceEEecccchh--------
Confidence 344555677777766544 332 1111221 2244699999999999999 78999999999999998752
Q ss_pred CCceeeeCCC-CCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe
Q 015484 157 DPDLRLKGHD-KEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG 235 (406)
Q Consensus 157 ~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~ 235 (406)
.+..++.|. ..|.+++|+|.+. .+++++.||+|+|||....+.. ..+.+|.-.|.+++|+| ...++++++
T Consensus 171 -nVk~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee------~vL~GHgwdVksvdWHP-~kgLiasgs 241 (464)
T KOG0284|consen 171 -NVKIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEE------RVLRGHGWDVKSVDWHP-TKGLIASGS 241 (464)
T ss_pred -hhHHhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchh------heeccCCCCcceeccCC-ccceeEEcc
Confidence 244455554 9999999999777 9999999999999999876554 34578999999999999 688999999
Q ss_pred cCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCC
Q 015484 236 DDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHE 315 (406)
Q Consensus 236 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~ 315 (406)
.|..|++||.+++.++.++..|+..|..+.|+|+++ +|++++.|..++++|+|.++. +..+.+|+..|+++.|+|-.+
T Consensus 242 kDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N-~Llt~skD~~~kv~DiR~mkE-l~~~r~Hkkdv~~~~WhP~~~ 319 (464)
T KOG0284|consen 242 KDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGN-WLLTGSKDQSCKVFDIRTMKE-LFTYRGHKKDVTSLTWHPLNE 319 (464)
T ss_pred CCceeEeecCCCcchhhhhhhccceEEEEEEcCCCC-eeEEccCCceEEEEehhHhHH-HHHhhcchhhheeeccccccc
Confidence 999999999999999999999999999999999996 999999999999999997776 889999999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 316 TVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 316 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
.+|.+|+.||.|..|.+.... .+...-.+|...|++++|+|-|. +|++|+.|..+++|.-..
T Consensus 320 ~lftsgg~Dgsvvh~~v~~~~-------------p~~~i~~AHd~~iwsl~~hPlGh-il~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 320 SLFTSGGSDGSVVHWVVGLEE-------------PLGEIPPAHDGEIWSLAYHPLGH-ILATGSNDRTVRFWTRNR 381 (464)
T ss_pred cceeeccCCCceEEEeccccc-------------cccCCCcccccceeeeeccccce-eEeecCCCcceeeeccCC
Confidence 999999999999999987311 22223357999999999999998 899999999999997543
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.3e-38 Score=254.13 Aligned_cols=289 Identities=21% Similarity=0.290 Sum_probs=237.0
Q ss_pred cCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCC----CCCCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEe
Q 015484 69 HTSEDFPNFLMIADAVLPTKDSESNVGGKNENP----VIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFD 144 (406)
Q Consensus 69 ~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~ 144 (406)
.++.++.|.|+ ++.+.++.+++.++.++... .--..+.....-...-|..++|+|.+ +++|+|+-|+...||+
T Consensus 49 r~LkGH~~Ki~--~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg-~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 49 RTLKGHLNKIY--AMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSG-NFVACGGLDNKCSIYP 125 (343)
T ss_pred EEeccccccee--eeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCC-CeEEecCcCceeEEEe
Confidence 45667777777 66666666666644444111 00011112222245789999999999 7899999999999999
Q ss_pred CCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEee
Q 015484 145 CAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWH 224 (406)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~ 224 (406)
+...... +.......+.+|++.+.|+.|-+++ .|+|++.|.+..+||+++++. ...|.+|.+.|.++.++
T Consensus 126 ls~~d~~--g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~~------~~~f~GH~gDV~slsl~ 195 (343)
T KOG0286|consen 126 LSTRDAE--GNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQQ------TQVFHGHTGDVMSLSLS 195 (343)
T ss_pred ccccccc--ccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccceE------EEEecCCcccEEEEecC
Confidence 9854221 2234456789999999999999844 699999999999999999854 46778999999999999
Q ss_pred CCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec--CCC
Q 015484 225 LKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILS--SHT 302 (406)
Q Consensus 225 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~h~ 302 (406)
|.+++.|++|+.|+..++||+|.+..++.|.+|...|+++.|.|+|. -+++|+.|++.++||+|...+ +..+. .-.
T Consensus 196 p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD~~-~a~ys~~~~~ 273 (343)
T KOG0286|consen 196 PSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYDLRADQE-LAVYSHDSII 273 (343)
T ss_pred CCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCC-eeeecCCCceeEEEeecCCcE-EeeeccCccc
Confidence 98899999999999999999999999999999999999999999998 899999999999999998654 54444 234
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCC
Q 015484 303 EEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDN 382 (406)
Q Consensus 303 ~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg 382 (406)
.+|++++|+..|+ +|.+|..|..+.+||.-. .+.+..+.||.+.|.++..+|+|. .+++|+.|.
T Consensus 274 ~gitSv~FS~SGR-lLfagy~d~~c~vWDtlk--------------~e~vg~L~GHeNRvScl~~s~DG~-av~TgSWDs 337 (343)
T KOG0286|consen 274 CGITSVAFSKSGR-LLFAGYDDFTCNVWDTLK--------------GERVGVLAGHENRVSCLGVSPDGM-AVATGSWDS 337 (343)
T ss_pred CCceeEEEccccc-EEEeeecCCceeEeeccc--------------cceEEEeeccCCeeEEEEECCCCc-EEEecchhH
Confidence 5899999999997 788999999999999876 466777889999999999999999 799999999
Q ss_pred cEEEEe
Q 015484 383 TVQVWQ 388 (406)
Q Consensus 383 ~i~iw~ 388 (406)
.++||.
T Consensus 338 ~lriW~ 343 (343)
T KOG0286|consen 338 TLRIWA 343 (343)
T ss_pred heeecC
Confidence 999994
No 11
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.2e-37 Score=244.94 Aligned_cols=253 Identities=19% Similarity=0.414 Sum_probs=217.1
Q ss_pred EEEEeecC-CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec
Q 015484 108 IAQKIRVD-GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS 186 (406)
Q Consensus 108 ~~~~~~h~-~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 186 (406)
..+.+.|+ +.|+++...|++ ..||+++.- .|++||+.+. ...|+.++.+|+..|+++.|..+|+ .+++|+
T Consensus 32 C~rTiqh~dsqVNrLeiTpdk-~~LAaa~~q-hvRlyD~~S~------np~Pv~t~e~h~kNVtaVgF~~dgr-WMyTgs 102 (311)
T KOG0315|consen 32 CSRTIQHPDSQVNRLEITPDK-KDLAAAGNQ-HVRLYDLNSN------NPNPVATFEGHTKNVTAVGFQCDGR-WMYTGS 102 (311)
T ss_pred EEEEEecCccceeeEEEcCCc-chhhhccCC-eeEEEEccCC------CCCceeEEeccCCceEEEEEeecCe-EEEecC
Confidence 45677776 799999999999 467776644 5999999984 4558999999999999999999999 999999
Q ss_pred CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-cccCCCeeEEE
Q 015484 187 HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKEVNYLS 265 (406)
Q Consensus 187 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~i~ 265 (406)
+||+++|||++.....+. -.|.++|+++..+| +...|++|..+|.|++||++...+...+ ......|.++.
T Consensus 103 eDgt~kIWdlR~~~~qR~-------~~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~ 174 (311)
T KOG0315|consen 103 EDGTVKIWDLRSLSCQRN-------YQHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLT 174 (311)
T ss_pred CCceEEEEeccCcccchh-------ccCCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEE
Confidence 999999999998554332 24679999999999 6777779999999999999987665444 44567899999
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCC-----CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccc
Q 015484 266 FNPYNEWVLATASSDTTVALFDMRKMT-----VPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL 340 (406)
Q Consensus 266 ~~~~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 340 (406)
..|+|. +++.+...|..++|++-+.. .|+..++.|.+.+..+.++|+++ +|++++.|.+++||+....
T Consensus 175 v~~dgs-ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k-~lat~ssdktv~iwn~~~~----- 247 (311)
T KOG0315|consen 175 VMPDGS-MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK-YLATCSSDKTVKIWNTDDF----- 247 (311)
T ss_pred EcCCCc-EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCc-EEEeecCCceEEEEecCCc-----
Confidence 999999 89999999999999987532 46788999999999999999998 5999999999999999872
Q ss_pred cccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 341 ELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 341 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
..+-..+.+|...+++++||.+|.| |++++.|+.+++|+++.+.
T Consensus 248 --------~kle~~l~gh~rWvWdc~FS~dg~Y-lvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 248 --------FKLELVLTGHQRWVWDCAFSADGEY-LVTASSDHTARLWDLSAGK 291 (311)
T ss_pred --------eeeEEEeecCCceEEeeeeccCccE-EEecCCCCceeecccccCc
Confidence 2455667899999999999999995 8899999999999999875
No 12
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-37 Score=250.52 Aligned_cols=258 Identities=18% Similarity=0.301 Sum_probs=219.0
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
...+|++.|+.++-.+.++.++++++.|.++.+|++..... ....++..+.||...|..+..++++. +.++++.|+
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~---~~G~~~r~~~GHsH~v~dv~~s~dg~-~alS~swD~ 85 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI---KYGVPVRRLTGHSHFVSDVVLSSDGN-FALSASWDG 85 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc---ccCceeeeeeccceEecceEEccCCc-eEEeccccc
Confidence 35579999999999999889999999999999999987633 24677899999999999999999998 999999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccc-cCCCeeEEEecC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA-HEKEVNYLSFNP 268 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~i~~~~ 268 (406)
++++||+.+++. .+.|.+|...|.+++|+| +++.+++|+.|.+|++|++........... +...|+|+.|+|
T Consensus 86 ~lrlWDl~~g~~------t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP 158 (315)
T KOG0279|consen 86 TLRLWDLATGES------TRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSP 158 (315)
T ss_pred eEEEEEecCCcE------EEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcC
Confidence 999999998743 467889999999999999 688889999999999999875443333232 278999999999
Q ss_pred CC-CcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCC
Q 015484 269 YN-EWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDG 347 (406)
Q Consensus 269 ~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 347 (406)
.. +.+|++++.|++|++||+++.+. ...+.+|++.++.++++|+|. ++++|+.||.+.+||++.
T Consensus 159 ~~~~p~Ivs~s~DktvKvWnl~~~~l-~~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~------------- 223 (315)
T KOG0279|consen 159 NESNPIIVSASWDKTVKVWNLRNCQL-RTTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNE------------- 223 (315)
T ss_pred CCCCcEEEEccCCceEEEEccCCcch-hhccccccccEEEEEECCCCC-EEecCCCCceEEEEEccC-------------
Confidence 83 33999999999999999998665 778899999999999999996 799999999999999987
Q ss_pred CCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCCC
Q 015484 348 PPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDD 397 (406)
Q Consensus 348 ~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 397 (406)
.+.++.+ +|...|.+++|+|+..+ |+.+ .+..|+|||+.++..-++
T Consensus 224 -~k~lysl-~a~~~v~sl~fspnryw-L~~a-t~~sIkIwdl~~~~~v~~ 269 (315)
T KOG0279|consen 224 -GKNLYSL-EAFDIVNSLCFSPNRYW-LCAA-TATSIKIWDLESKAVVEE 269 (315)
T ss_pred -CceeEec-cCCCeEeeEEecCCcee-Eeec-cCCceEEEeccchhhhhh
Confidence 2344444 47789999999999874 4443 456799999999865443
No 13
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.6e-36 Score=246.36 Aligned_cols=255 Identities=17% Similarity=0.271 Sum_probs=220.8
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
..+|.+.|.++.|+++. +.|++++.||.+.|||.-+.. ..+.++-....|..++|+|.+. ++|+|+.|+.
T Consensus 51 LkGH~~Ki~~~~ws~Ds-r~ivSaSqDGklIvWDs~Ttn--------K~haipl~s~WVMtCA~sPSg~-~VAcGGLdN~ 120 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWSTDS-RRIVSASQDGKLIVWDSFTTN--------KVHAIPLPSSWVMTCAYSPSGN-FVACGGLDNK 120 (343)
T ss_pred ecccccceeeeEecCCc-CeEEeeccCCeEEEEEccccc--------ceeEEecCceeEEEEEECCCCC-eEEecCcCce
Confidence 44799999999999999 579999999999999998743 2556666788999999999998 9999999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~ 270 (406)
..||++.+.......+..+.+.+|.+.+.|+.|-+ ...|++++.|.++.+||+++++.+..+.+|.+.|.+++++|..
T Consensus 121 Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~ 198 (343)
T KOG0286|consen 121 CSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSD 198 (343)
T ss_pred eEEEecccccccccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCC
Confidence 99999986543344445577889999999999985 5566699999999999999999999999999999999999944
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCe
Q 015484 271 EWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPE 350 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 350 (406)
.+.+++|+.|+..++||+|.+.. ++.|.+|...|++++|.|+|. -+++|++|++.++||++...+ .
T Consensus 199 ~ntFvSg~cD~~aklWD~R~~~c-~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD~~------------~ 264 (343)
T KOG0286|consen 199 GNTFVSGGCDKSAKLWDVRSGQC-VQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYDLRADQE------------L 264 (343)
T ss_pred CCeEEecccccceeeeeccCcce-eEeecccccccceEEEccCCC-eeeecCCCceeEEEeecCCcE------------E
Confidence 44999999999999999999755 999999999999999999997 499999999999999997322 3
Q ss_pred eEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 351 LLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 351 ~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.++....-..+|++++||..|+ +|.+|..|..+.+||.-.+
T Consensus 265 a~ys~~~~~~gitSv~FS~SGR-lLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 265 AVYSHDSIICGITSVAFSKSGR-LLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred eeeccCcccCCceeEEEccccc-EEEeeecCCceeEeecccc
Confidence 3444444566899999999999 7888899999999997655
No 14
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.2e-37 Score=281.26 Aligned_cols=255 Identities=19% Similarity=0.346 Sum_probs=220.2
Q ss_pred CCCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeE
Q 015484 103 IPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYL 182 (406)
Q Consensus 103 ~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 182 (406)
..........+|.++|..++|+|+. ++|++++.|++|++|.+.+ ......+++|..+|+.+.|+|.|- ++
T Consensus 439 ~~~~~~~~L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t--------~s~~V~y~GH~~PVwdV~F~P~Gy-YF 508 (707)
T KOG0263|consen 439 DSSGTSRTLYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDT--------WSCLVIYKGHLAPVWDVQFAPRGY-YF 508 (707)
T ss_pred cCCceeEEeecCCCceeeeeecccc-cceeeccCCcceeeeeccc--------ceeEEEecCCCcceeeEEecCCce-EE
Confidence 3445556688999999999999999 6899999999999999998 455788999999999999999988 99
Q ss_pred EEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCee
Q 015484 183 VSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVN 262 (406)
Q Consensus 183 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 262 (406)
||||.|++.++|..... .+++.+.+|-+.|.|+.||| +.+++++|+.|.++++||+.+|..++.|.+|.++|.
T Consensus 509 atas~D~tArLWs~d~~------~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~ 581 (707)
T KOG0263|consen 509 ATASHDQTARLWSTDHN------KPLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVT 581 (707)
T ss_pred EecCCCceeeeeecccC------CchhhhcccccccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCceE
Confidence 99999999999998774 35678889999999999999 899999999999999999999999999999999999
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccc-
Q 015484 263 YLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE- 341 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~- 341 (406)
+++|+|.|. +|++|+.||.|.+||+.++.. +..+.+|++.|.++.|+.+|. +||+|+.|.+|++||+.........
T Consensus 582 al~~Sp~Gr-~LaSg~ed~~I~iWDl~~~~~-v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~~~~~~~~~ 658 (707)
T KOG0263|consen 582 ALAFSPCGR-YLASGDEDGLIKIWDLANGSL-VKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTKVIELLNLG 658 (707)
T ss_pred EEEEcCCCc-eEeecccCCcEEEEEcCCCcc-hhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEchhhccccccc
Confidence 999999999 999999999999999998665 888999999999999999997 7999999999999999875443100
Q ss_pred ---------ccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEE
Q 015484 342 ---------LDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSV 378 (406)
Q Consensus 342 ---------~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~ 378 (406)
.........++.++.....+|..+.|....- +++.|
T Consensus 659 ~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl-~L~~g 703 (707)
T KOG0263|consen 659 HISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNL-LLAVG 703 (707)
T ss_pred ccccccccccccCCCCcceeeeeeecCceEEEEEEeccce-eEEec
Confidence 0111123346677777778999999987653 55554
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-36 Score=242.90 Aligned_cols=256 Identities=21% Similarity=0.306 Sum_probs=208.6
Q ss_pred EEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC
Q 015484 108 IAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 108 ~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
.+...+|+..|..+..++++ ++.++++.|+++++||+... ++...+.+|...|.+++|+++++ .+++|+.
T Consensus 56 ~r~~~GHsH~v~dv~~s~dg-~~alS~swD~~lrlWDl~~g--------~~t~~f~GH~~dVlsva~s~dn~-qivSGSr 125 (315)
T KOG0279|consen 56 VRRLTGHSHFVSDVVLSSDG-NFALSASWDGTLRLWDLATG--------ESTRRFVGHTKDVLSVAFSTDNR-QIVSGSR 125 (315)
T ss_pred eeeeeccceEecceEEccCC-ceEEeccccceEEEEEecCC--------cEEEEEEecCCceEEEEecCCCc-eeecCCC
Confidence 35566899999999999999 68999999999999999983 55788999999999999999998 9999999
Q ss_pred CCeEEEEeCCCccCCceeeeeeeeec--cCccEEEEEeeCCC-CCEEEEEecCCcEEEEECCCCcccccccccCCCeeEE
Q 015484 188 DNKICLWDVSALAQDKVIDAMHVYEA--HESVVEDVSWHLKN-ENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYL 264 (406)
Q Consensus 188 dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i 264 (406)
|.+|++|++-... ..+... +...|.|+.|+|.. ..+|++++.|++|++||+++-+....+.+|.+.++.+
T Consensus 126 DkTiklwnt~g~c-------k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~ 198 (315)
T KOG0279|consen 126 DKTIKLWNTLGVC-------KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTV 198 (315)
T ss_pred cceeeeeeecccE-------EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEE
Confidence 9999999987642 122222 36789999999954 7789999999999999999999999999999999999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 344 (406)
+++|+|. ++++|+.||.+.+||++..+. +..+ .|...|.+++|+|+.. .|+. ..+..|+|||+............
T Consensus 199 ~vSpDGs-lcasGgkdg~~~LwdL~~~k~-lysl-~a~~~v~sl~fspnry-wL~~-at~~sIkIwdl~~~~~v~~l~~d 273 (315)
T KOG0279|consen 199 TVSPDGS-LCASGGKDGEAMLWDLNEGKN-LYSL-EAFDIVNSLCFSPNRY-WLCA-ATATSIKIWDLESKAVVEELKLD 273 (315)
T ss_pred EECCCCC-EEecCCCCceEEEEEccCCce-eEec-cCCCeEeeEEecCCce-eEee-ccCCceEEEeccchhhhhhcccc
Confidence 9999999 999999999999999998776 5554 5688999999999974 3544 44667999999874432211111
Q ss_pred cCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 345 EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 345 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
..++ ..........+++|+++|. .|.+|-.|+.|++|.+..
T Consensus 274 ~~g~-----s~~~~~~~clslaws~dG~-tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 274 GIGP-----SSKAGDPICLSLAWSADGQ-TLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred cccc-----ccccCCcEEEEEEEcCCCc-EEEeeecCCcEEEEEeec
Confidence 1111 1122233456889999999 688999999999999753
No 16
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.9e-38 Score=265.81 Aligned_cols=242 Identities=24% Similarity=0.461 Sum_probs=216.2
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
-+..|+.++|.|+| +.|++|+..|.+.+|+... +.....++.|..+|.++.|++++. .+++|+.+|.|++
T Consensus 95 vkc~V~~v~WtPeG-RRLltgs~SGEFtLWNg~~--------fnFEtilQaHDs~Vr~m~ws~~g~-wmiSgD~gG~iKy 164 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEG-RRLLTGSQSGEFTLWNGTS--------FNFETILQAHDSPVRTMKWSHNGT-WMISGDKGGMIKY 164 (464)
T ss_pred cccceeeEEEcCCC-ceeEeecccccEEEecCce--------eeHHHHhhhhcccceeEEEccCCC-EEEEcCCCceEEe
Confidence 34689999999999 4689999999999999865 333455789999999999999999 9999999999999
Q ss_pred EeCCCccCCceeeeeeeeecc-CccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCc
Q 015484 194 WDVSALAQDKVIDAMHVYEAH-ESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEW 272 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 272 (406)
|+.+-.. +..+..| ...|++++|+| +...|+++++||+|+|||....+....+.+|.-.|.+++|+|...
T Consensus 165 Wqpnmnn-------Vk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg- 235 (464)
T KOG0284|consen 165 WQPNMNN-------VKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG- 235 (464)
T ss_pred cccchhh-------hHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccc-
Confidence 9976532 2333444 48999999999 678888999999999999999998888999999999999999988
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeE
Q 015484 273 VLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELL 352 (406)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (406)
++++|+.|..|++||.|++.+ +.++..|+..|..+.|+|+++ +|+|+|.|..++++|++. .+-+
T Consensus 236 LiasgskDnlVKlWDprSg~c-l~tlh~HKntVl~~~f~~n~N-~Llt~skD~~~kv~DiR~--------------mkEl 299 (464)
T KOG0284|consen 236 LIASGSKDNLVKLWDPRSGSC-LATLHGHKNTVLAVKFNPNGN-WLLTGSKDQSCKVFDIRT--------------MKEL 299 (464)
T ss_pred eeEEccCCceeEeecCCCcch-hhhhhhccceEEEEEEcCCCC-eeEEccCCceEEEEehhH--------------hHHH
Confidence 999999999999999999877 899999999999999999996 799999999999999996 2456
Q ss_pred EEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 353 FSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 353 ~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
+.+++|...|+++.|+|-.+.+|++|+.||.|..|.+.
T Consensus 300 ~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 300 FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred HHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence 67789999999999999888899999999999999988
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.7e-36 Score=259.69 Aligned_cols=245 Identities=22% Similarity=0.418 Sum_probs=220.3
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
-...|++++|+.+| .+||+|+.||.++||+... ....++..|.++|.++.|+..|. +|++++.||++.+
T Consensus 234 ~nkdVT~L~Wn~~G-~~LatG~~~G~~riw~~~G---------~l~~tl~~HkgPI~slKWnk~G~-yilS~~vD~ttil 302 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDG-TLLATGSEDGEARIWNKDG---------NLISTLGQHKGPIFSLKWNKKGT-YILSGGVDGTTIL 302 (524)
T ss_pred ccCCcceEEecCCC-CeEEEeecCcEEEEEecCc---------hhhhhhhccCCceEEEEEcCCCC-EEEeccCCccEEE
Confidence 34689999999999 7999999999999999986 33667889999999999999998 9999999999999
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcE
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWV 273 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 273 (406)
||..++.. .+.+.-|..+-.+|.|- +..-|++++.||.|+++.+....++.++.+|.+.|.++.|+|.+. +
T Consensus 303 wd~~~g~~------~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~-L 373 (524)
T KOG0273|consen 303 WDAHTGTV------KQQFEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS-L 373 (524)
T ss_pred EeccCceE------EEeeeeccCCccceEEe--cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCc-e
Confidence 99987643 35556677777888997 578899999999999999999999999999999999999999999 9
Q ss_pred EEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCC--------CEEEEEeCCCcEEEEeCCCCCccccccccc
Q 015484 274 LATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHE--------TVLASSADDRRLMVWDLNRIGDEQLELDAE 345 (406)
Q Consensus 274 l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~--------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 345 (406)
|++++.|++++||.+..... ...+.+|...|..+.|+|.++ ..+++++.|++|++||+..
T Consensus 374 LaS~SdD~TlkiWs~~~~~~-~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~----------- 441 (524)
T KOG0273|consen 374 LASCSDDGTLKIWSMGQSNS-VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES----------- 441 (524)
T ss_pred EEEecCCCeeEeeecCCCcc-hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC-----------
Confidence 99999999999999887554 888999999999999999764 3699999999999999987
Q ss_pred CCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 346 DGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 346 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
..+++.+..|..+|.+++|+|+|+ .+|+|+.||.|+||+..++.+
T Consensus 442 ---gv~i~~f~kH~~pVysvafS~~g~-ylAsGs~dg~V~iws~~~~~l 486 (524)
T KOG0273|consen 442 ---GVPIHTLMKHQEPVYSVAFSPNGR-YLASGSLDGCVHIWSTKTGKL 486 (524)
T ss_pred ---CceeEeeccCCCceEEEEecCCCc-EEEecCCCCeeEeccccchhe
Confidence 678888999999999999999999 599999999999999998855
No 18
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.9e-35 Score=234.86 Aligned_cols=271 Identities=21% Similarity=0.399 Sum_probs=215.6
Q ss_pred EEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceee-eCCCCCeeEEEecCCCCCeEEEe
Q 015484 107 EIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRL-KGHDKEGYGLSWSPFKEGYLVSG 185 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~ 185 (406)
.+...-+|++.+..++|+|-...+||+|+.|+.|+||+..... .......+ .+|+..|.+++|+|.|+ +|++|
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~-----s~~ck~vld~~hkrsVRsvAwsp~g~-~La~a 79 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD-----SWTCKTVLDDGHKRSVRSVAWSPHGR-YLASA 79 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC-----cEEEEEeccccchheeeeeeecCCCc-EEEEe
Confidence 4455667999999999999733699999999999999998521 12222223 36999999999999999 99999
Q ss_pred cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCc---ccccccccCCCee
Q 015484 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ---TQQRVKAHEKEVN 262 (406)
Q Consensus 186 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~v~ 262 (406)
|.|.++.||.-.. ..+.++..+.+|...|.+++|++ ++++||+++.|.+|-||.+.... +...+..|...|.
T Consensus 80 SFD~t~~Iw~k~~----~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK 154 (312)
T KOG0645|consen 80 SFDATVVIWKKED----GEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVK 154 (312)
T ss_pred eccceEEEeecCC----CceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccccc
Confidence 9999999998664 45677899999999999999998 89999999999999999998543 3566789999999
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCCCCC--CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccc
Q 015484 263 YLSFNPYNEWVLATASSDTTVALFDMRKMT--VPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL 340 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 340 (406)
.+.|+|... +|++++.|.+|++|+-.... ..++++.+|...|.+++|+|.|.. |++++.|++++||.+...-....
T Consensus 155 ~V~WHPt~d-lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~r-l~s~sdD~tv~Iw~~~~~~~~~~ 232 (312)
T KOG0645|consen 155 HVIWHPTED-LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSR-LVSCSDDGTVSIWRLYTDLSGMH 232 (312)
T ss_pred EEEEcCCcc-eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCce-EEEecCCcceEeeeeccCcchhc
Confidence 999999888 99999999999999876322 347889999999999999999974 99999999999998432110000
Q ss_pred ----c--------------------ccccCCCCe----eE-EEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 341 ----E--------------------LDAEDGPPE----LL-FSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 341 ----~--------------------~~~~~~~~~----~~-~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
. +.....+.. ++ .....|...|+++.|+|..+.+|++|+.||.|++|.+.
T Consensus 233 sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 233 SRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 0 000011111 11 12246888999999999655689999999999999875
No 19
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=7.1e-37 Score=264.15 Aligned_cols=254 Identities=21% Similarity=0.334 Sum_probs=219.7
Q ss_pred CCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEE
Q 015484 104 PKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLV 183 (406)
Q Consensus 104 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 183 (406)
|+-.+...-+|+..|+++.|.|....+|++++.|+.|+||++.. ....+.++.+|..+|.+++|+++|. .++
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~-------~~~~lrtf~gH~k~Vrd~~~s~~g~-~fL 274 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-------DRRCLRTFKGHRKPVRDASFNNCGT-SFL 274 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec-------CcceehhhhcchhhhhhhhccccCC-eee
Confidence 45556667789999999999995558999999999999999987 3556889999999999999999999 999
Q ss_pred EecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeE
Q 015484 184 SGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNY 263 (406)
Q Consensus 184 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 263 (406)
+++.|+.|++||+++++.. ..+. ....++|+.|+|++.++|++|+.|+.|+.||+|+++.++.+..|-+.|..
T Consensus 275 S~sfD~~lKlwDtETG~~~------~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~ 347 (503)
T KOG0282|consen 275 SASFDRFLKLWDTETGQVL------SRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILD 347 (503)
T ss_pred eeecceeeeeeccccceEE------EEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheee
Confidence 9999999999999998653 2222 35678999999988899999999999999999999999999999999999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCCC------------C---------------------------------cEEe
Q 015484 264 LSFNPYNEWVLATASSDTTVALFDMRKMTV------------P---------------------------------LHIL 298 (406)
Q Consensus 264 i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~------------~---------------------------------~~~~ 298 (406)
+.|-+.|. .+++.+.|++++||+.+..-. | ...+
T Consensus 348 i~F~~~g~-rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~f 426 (503)
T KOG0282|consen 348 ITFVDEGR-RFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRF 426 (503)
T ss_pred eEEccCCc-eEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhh
Confidence 99999999 899999999999999876321 0 1123
Q ss_pred cCCC--CCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEE
Q 015484 299 SSHT--EEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVIS 376 (406)
Q Consensus 299 ~~h~--~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~ 376 (406)
.+|. +.-..+.|+|+|+ +|++|+.||.+.+||.++ ..++..+.+|..++..+.|+|..+..+|
T Consensus 427 eGh~vaGys~~v~fSpDG~-~l~SGdsdG~v~~wdwkt--------------~kl~~~lkah~~~ci~v~wHP~e~Skva 491 (503)
T KOG0282|consen 427 EGHSVAGYSCQVDFSPDGR-TLCSGDSDGKVNFWDWKT--------------TKLVSKLKAHDQPCIGVDWHPVEPSKVA 491 (503)
T ss_pred cceeccCceeeEEEcCCCC-eEEeecCCccEEEeechh--------------hhhhhccccCCcceEEEEecCCCcceeE
Confidence 3443 2356789999998 599999999999999987 4677778899999999999999888899
Q ss_pred EEeCCCcEEEEe
Q 015484 377 SVADDNTVQVWQ 388 (406)
Q Consensus 377 s~~~dg~i~iw~ 388 (406)
|++.||.|++|+
T Consensus 492 t~~w~G~Ikiwd 503 (503)
T KOG0282|consen 492 TCGWDGLIKIWD 503 (503)
T ss_pred ecccCceeEecC
Confidence 999999999996
No 20
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.9e-35 Score=239.14 Aligned_cols=254 Identities=20% Similarity=0.327 Sum_probs=219.7
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
....+|++.|+.+.|+|+| .+||+|+.|..|.+|++.. .++....+++|++.|..+.|.+++. .|++++.|
T Consensus 41 m~l~gh~geI~~~~F~P~g-s~~aSgG~Dr~I~LWnv~g-------dceN~~~lkgHsgAVM~l~~~~d~s-~i~S~gtD 111 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDG-SCFASGGSDRAIVLWNVYG-------DCENFWVLKGHSGAVMELHGMRDGS-HILSCGTD 111 (338)
T ss_pred hhcCCCcceEEEEEECCCC-CeEeecCCcceEEEEeccc-------cccceeeeccccceeEeeeeccCCC-EEEEecCC
Confidence 3467899999999999988 6899999999999999776 3555778889999999999999998 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
.+|+.||+++++.. ..++.|..-|+.+.-+..+..++.+++.||++++||+|+...++++. .+-+++++.|..
T Consensus 112 k~v~~wD~~tG~~~------rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d 184 (338)
T KOG0265|consen 112 KTVRGWDAETGKRI------RKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKD 184 (338)
T ss_pred ceEEEEecccceee------ehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecc
Confidence 99999999998653 56678999999988666677889999999999999999999888875 466799999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGP 348 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 348 (406)
.+. .+.+|+-|+.|++||+|.... ...+.+|...|+.+..+|+|. .+.+-+.|.++++||++.....
T Consensus 185 ~s~-qv~sggIdn~ikvWd~r~~d~-~~~lsGh~DtIt~lsls~~gs-~llsnsMd~tvrvwd~rp~~p~---------- 251 (338)
T KOG0265|consen 185 TSD-QVISGGIDNDIKVWDLRKNDG-LYTLSGHADTITGLSLSRYGS-FLLSNSMDNTVRVWDVRPFAPS---------- 251 (338)
T ss_pred ccc-ceeeccccCceeeeccccCcc-eEEeecccCceeeEEeccCCC-ccccccccceEEEEEecccCCC----------
Confidence 888 899999999999999998665 899999999999999999998 5889999999999999864321
Q ss_pred CeeEEEecCCC----CCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 349 PELLFSHGGHK----AKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 349 ~~~~~~~~~h~----~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.+++..+.+|. .....++|+|++. .+.+|+.|..+++||....
T Consensus 252 ~R~v~if~g~~hnfeknlL~cswsp~~~-~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 252 QRCVKIFQGHIHNFEKNLLKCSWSPNGT-KITAGSADRFVYVWDTTSR 298 (338)
T ss_pred CceEEEeecchhhhhhhcceeeccCCCC-ccccccccceEEEeecccc
Confidence 23455555553 3456789999999 5899999999999999874
No 21
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-35 Score=234.34 Aligned_cols=249 Identities=20% Similarity=0.399 Sum_probs=214.0
Q ss_pred eEEEEcCCCCcEEEEEeC-------CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeE
Q 015484 119 NRARCMPQKPNLVGTKTS-------SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKI 191 (406)
Q Consensus 119 ~~i~~~p~~~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 191 (406)
.++.|+|--.+.||++.. .|++.|.++..... ......+ .-.+.+..++|++...+.+++++.||++
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~g-----i~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGSL 85 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKG-----IQECQSY-DTEDGLFDVAWSENHENQVIAASGDGSL 85 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCC-----eEEEEee-ecccceeEeeecCCCcceEEEEecCceE
Confidence 578899965555665543 68899999974221 1112222 3457899999999988899999999999
Q ss_pred EEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCC
Q 015484 192 CLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNE 271 (406)
Q Consensus 192 ~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~ 271 (406)
++||+.... .++..++.|...|.++.|++..+..+++++.|++|++|+...++.+.++.+|...|...+|+|..+
T Consensus 86 rl~d~~~~s-----~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~ 160 (311)
T KOG0277|consen 86 RLFDLTMPS-----KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIP 160 (311)
T ss_pred EEeccCCCC-----cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCC
Confidence 999955432 367888999999999999998899999999999999999999999999999999999999999998
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCee
Q 015484 272 WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPEL 351 (406)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 351 (406)
+++++++.|+.+++||+|.....+. +..|...+.++.|+..++++++||+.|+.|++||+++.. ..
T Consensus 161 nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r-------------~p 226 (311)
T KOG0277|consen 161 NLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR-------------TP 226 (311)
T ss_pred CeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc-------------cc
Confidence 8999999999999999998877444 889999999999999999999999999999999999843 45
Q ss_pred EEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 352 LFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 352 ~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
++.+.+|.-.|..+.|||....+|+|++.|-+++||++..+
T Consensus 227 l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 227 LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ 267 (311)
T ss_pred ceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence 77889999999999999998889999999999999999854
No 22
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-35 Score=245.87 Aligned_cols=254 Identities=22% Similarity=0.382 Sum_probs=228.9
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
.+..+|..+|+.+-|+|.- .++++++.|++|++||..++ .....+++|...+..|+|+..|. +|++++.|
T Consensus 102 ~~l~g~r~~vt~v~~hp~~-~~v~~as~d~tikv~D~~tg--------~~e~~LrGHt~sv~di~~~a~Gk-~l~tcSsD 171 (406)
T KOG0295|consen 102 QKLAGHRSSVTRVIFHPSE-ALVVSASEDATIKVFDTETG--------ELERSLRGHTDSVFDISFDASGK-YLATCSSD 171 (406)
T ss_pred hhhhccccceeeeeeccCc-eEEEEecCCceEEEEEccch--------hhhhhhhccccceeEEEEecCcc-EEEecCCc
Confidence 4566799999999999988 58999999999999999984 33778999999999999999998 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
-.+++||..+. .+++....+|...|.+++|-| .+..+++++.|.+|+.|++.++-++.++.+|...|..++.+.
T Consensus 172 l~~~LWd~~~~-----~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~ 245 (406)
T KOG0295|consen 172 LSAKLWDFDTF-----FRCIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ 245 (406)
T ss_pred cchhheeHHHH-----HHHHHHhcCcccceeeEEEEe-cCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC
Confidence 99999998763 345566778999999999999 568899999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCC--------------CCCEEEEEeCCCcEEEEeCCC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPN--------------HETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~--------------~~~~l~s~~~dg~i~iwd~~~ 334 (406)
+|. ++|+++.|.+|++|-+.+... ...+..|..+|-+++|.|. +..++++++.|++|++||+..
T Consensus 246 DGt-i~As~s~dqtl~vW~~~t~~~-k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t 323 (406)
T KOG0295|consen 246 DGT-IIASCSNDQTLRVWVVATKQC-KAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST 323 (406)
T ss_pred Cee-EEEecCCCceEEEEEeccchh-hhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC
Confidence 999 999999999999999988654 6778899999999999874 124799999999999999998
Q ss_pred CCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 335 IGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
+.+++++.+|...|.+++|+|.|+| |+|+.+|+++++||+.++.+.
T Consensus 324 --------------g~cL~tL~ghdnwVr~~af~p~Gky-i~ScaDDktlrvwdl~~~~cm 369 (406)
T KOG0295|consen 324 --------------GMCLFTLVGHDNWVRGVAFSPGGKY-ILSCADDKTLRVWDLKNLQCM 369 (406)
T ss_pred --------------CeEEEEEecccceeeeeEEcCCCeE-EEEEecCCcEEEEEeccceee
Confidence 6899999999999999999999995 889999999999999998654
No 23
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.7e-35 Score=245.36 Aligned_cols=250 Identities=25% Similarity=0.401 Sum_probs=223.1
Q ss_pred EEEEEe-ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEe
Q 015484 107 EIAQKI-RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSG 185 (406)
Q Consensus 107 ~~~~~~-~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 185 (406)
+..+.+ +|.+-|.|+++.|-+ ..+++|+.|++|.|||+.++ +...++.+|...|..+++|+-.. +|+++
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n-~wf~tgs~DrtikIwDlatg--------~LkltltGhi~~vr~vavS~rHp-YlFs~ 211 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGN-EWFATGSADRTIKIWDLATG--------QLKLTLTGHIETVRGVAVSKRHP-YLFSA 211 (460)
T ss_pred eehhhhhhccceEEEEeeCCCc-eeEEecCCCceeEEEEcccC--------eEEEeecchhheeeeeeecccCc-eEEEe
Confidence 334333 699999999999987 79999999999999999984 34678999999999999999888 99999
Q ss_pred cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEE
Q 015484 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLS 265 (406)
Q Consensus 186 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~ 265 (406)
+.|+.|+.||++..+. ++.+.+|-+.|.|++.+| .-..+++|+.|..+++||+|+...+..+.+|..+|.++.
T Consensus 212 gedk~VKCwDLe~nkv------IR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~ 284 (460)
T KOG0285|consen 212 GEDKQVKCWDLEYNKV------IRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVM 284 (460)
T ss_pred cCCCeeEEEechhhhh------HHHhccccceeEEEeccc-cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEE
Confidence 9999999999988643 466788999999999999 678888999999999999999999999999999999999
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccccccc
Q 015484 266 FNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAE 345 (406)
Q Consensus 266 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 345 (406)
+.|.++ .+++|+.|++|++||++.++. ...+..|...|.+++.+|... ++|+++.| .|+-|++..
T Consensus 285 ~~~~dp-qvit~S~D~tvrlWDl~agkt-~~tlt~hkksvral~lhP~e~-~fASas~d-nik~w~~p~----------- 349 (460)
T KOG0285|consen 285 CQPTDP-QVITGSHDSTVRLWDLRAGKT-MITLTHHKKSVRALCLHPKEN-LFASASPD-NIKQWKLPE----------- 349 (460)
T ss_pred eecCCC-ceEEecCCceEEEeeeccCce-eEeeecccceeeEEecCCchh-hhhccCCc-cceeccCCc-----------
Confidence 999888 899999999999999999776 778889999999999999985 68888877 689999976
Q ss_pred CCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 346 DGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 346 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
...+..+.+|...|.+++.+.++ ++++|++.|.+.+||..++.
T Consensus 350 ---g~f~~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 350 ---GEFLQNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGH 392 (460)
T ss_pred ---cchhhccccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCc
Confidence 35566678999999999999887 68899999999999998874
No 24
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.7e-35 Score=245.77 Aligned_cols=253 Identities=23% Similarity=0.363 Sum_probs=216.3
Q ss_pred EEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC
Q 015484 108 IAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 108 ~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
.....+|+|.|.|+.|.. .++++|+.|.+|+|||.++ ..++.++.+|...|..+.|+. . ++++++.
T Consensus 230 ~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~t--------ge~l~tlihHceaVLhlrf~n--g-~mvtcSk 295 (499)
T KOG0281|consen 230 LKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNT--------GEPLNTLIHHCEAVLHLRFSN--G-YMVTCSK 295 (499)
T ss_pred HHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccC--------CchhhHHhhhcceeEEEEEeC--C-EEEEecC
Confidence 345679999999999975 5899999999999999998 466888999999999999973 3 9999999
Q ss_pred CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEec
Q 015484 188 DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFN 267 (406)
Q Consensus 188 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~ 267 (406)
|.+|.+||+.... .+.+...+.+|..+|+.+.|+ .+++++++.|.+|++|++.+.+.+.++.+|...|-|+++.
T Consensus 296 DrsiaVWdm~sps---~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr 369 (499)
T KOG0281|consen 296 DRSIAVWDMASPT---DITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR 369 (499)
T ss_pred CceeEEEeccCch---HHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc
Confidence 9999999998864 334557778999999999996 5699999999999999999999999999999999999885
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCC
Q 015484 268 PYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDG 347 (406)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 347 (406)
++ ++++|+.|.+|++||+..+.. +..+.+|..-|.++.|... -+++|+.||+|+|||+.....+....
T Consensus 370 --~r-lvVSGSSDntIRlwdi~~G~c-LRvLeGHEeLvRciRFd~k---rIVSGaYDGkikvWdl~aaldpra~~----- 437 (499)
T KOG0281|consen 370 --DR-LVVSGSSDNTIRLWDIECGAC-LRVLEGHEELVRCIRFDNK---RIVSGAYDGKIKVWDLQAALDPRAPA----- 437 (499)
T ss_pred --Ce-EEEecCCCceEEEEeccccHH-HHHHhchHHhhhheeecCc---eeeeccccceEEEEecccccCCcccc-----
Confidence 55 999999999999999999776 8899999999999999854 39999999999999998744332111
Q ss_pred CCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 348 PPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 348 ~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
...++.....|.+.|..+.|..- .+++++.|..|-|||+.++.-.
T Consensus 438 ~~~Cl~~lv~hsgRVFrLQFD~f---qIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 438 STLCLRTLVEHSGRVFRLQFDEF---QIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred cchHHHhhhhccceeEEEeecce---EEEeccCCCeEEEEEcCCCCcc
Confidence 12345556678999999999754 5888899999999999887643
No 25
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-34 Score=261.19 Aligned_cols=260 Identities=19% Similarity=0.288 Sum_probs=227.1
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
...+|...|.++....+| .+|++|+.|.++++|.+++... ...+.....+|+..|.+++++..+..+|+++|.|+
T Consensus 360 ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~----~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~ 434 (775)
T KOG0319|consen 360 IIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCS----KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDC 434 (775)
T ss_pred EEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcc----hhhhhhhhcccccccceeeecccCccEEEEecCCc
Confidence 456899999999966667 7999999999999999954322 23456667899999999999988888999999999
Q ss_pred eEEEEeCCCccCCc---eeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEe
Q 015484 190 KICLWDVSALAQDK---VIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSF 266 (406)
Q Consensus 190 ~i~iwd~~~~~~~~---~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~ 266 (406)
++++|++...+... .+.+......|...|++++.+| +..++|+|+.|.+.+||++.+......+.+|+..|.++.|
T Consensus 435 tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~F 513 (775)
T KOG0319|consen 435 TLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSF 513 (775)
T ss_pred eEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCccceEEEEe
Confidence 99999998733322 1222224457999999999999 8999999999999999999998989999999999999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC
Q 015484 267 NPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED 346 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 346 (406)
+|..+ +++|++.|++|+||.+.+..+ +.++.+|...|..+.|-.++.. |++++.||.|++|++.+
T Consensus 514 s~~dq-~laT~SgD~TvKIW~is~fSC-lkT~eGH~~aVlra~F~~~~~q-liS~~adGliKlWnikt------------ 578 (775)
T KOG0319|consen 514 SKNDQ-LLATCSGDKTVKIWSISTFSC-LKTFEGHTSAVLRASFIRNGKQ-LISAGADGLIKLWNIKT------------ 578 (775)
T ss_pred ccccc-eeEeccCCceEEEEEecccee-eeeecCccceeEeeeeeeCCcE-EEeccCCCcEEEEeccc------------
Confidence 99988 999999999999999999776 9999999999999999999974 99999999999999998
Q ss_pred CCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 347 GPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 347 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
..+..++.+|.+.|++++-+|.+. +++||+.||.|.+|.=.+..
T Consensus 579 --~eC~~tlD~H~DrvWaL~~~~~~~-~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 579 --NECEMTLDAHNDRVWALSVSPLLD-MFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred --hhhhhhhhhccceeEEEeecCccc-eeEecCCCeEEEEeecCcHH
Confidence 567788899999999999999998 79999999999999755543
No 26
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.1e-33 Score=251.20 Aligned_cols=267 Identities=16% Similarity=0.279 Sum_probs=215.6
Q ss_pred EEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC
Q 015484 108 IAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 108 ~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
+.+.-+|...+++++++||| .++|||+.||+|+|||... .-+..++..|+..|+++.|+..+. .+++++.
T Consensus 343 VlKQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~S--------gfC~vTFteHts~Vt~v~f~~~g~-~llssSL 412 (893)
T KOG0291|consen 343 VLKQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQS--------GFCFVTFTEHTSGVTAVQFTARGN-VLLSSSL 412 (893)
T ss_pred eeeccccccceeeEEECCCC-cEEEeccCCCcEEEEeccC--------ceEEEEeccCCCceEEEEEEecCC-EEEEeec
Confidence 35566899999999999999 6899999999999999988 345889999999999999999988 9999999
Q ss_pred CCeEEEEeCCCccCCceeeeeeeeec-cCccEEEEEeeCCCCCEEEEEecCC-cEEEEECCCCcccccccccCCCeeEEE
Q 015484 188 DNKICLWDVSALAQDKVIDAMHVYEA-HESVVEDVSWHLKNENLFGSAGDDC-QLMIWDLRTNQTQQRVKAHEKEVNYLS 265 (406)
Q Consensus 188 dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~i~ 265 (406)
||+|+.||+.....- +++.. ......|++..| .+.++++|+.|. .|.+|++++|+.+..+.+|.++|.+++
T Consensus 413 DGtVRAwDlkRYrNf------RTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~ 485 (893)
T KOG0291|consen 413 DGTVRAWDLKRYRNF------RTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLS 485 (893)
T ss_pred CCeEEeeeeccccee------eeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeE
Confidence 999999999876443 33332 234567888888 678887777664 599999999999999999999999999
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc-
Q 015484 266 FNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA- 344 (406)
Q Consensus 266 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~- 344 (406)
|+|.+. .|++++.|.+|++||+-.....+.++. +...+..++|.|+|+. |++++.||.|.+||.....+.......
T Consensus 486 f~~~~~-~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~e-laVaTldgqItf~d~~~~~q~~~Idgrk 562 (893)
T KOG0291|consen 486 FSPDGS-LLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKE-LAVATLDGQITFFDIKEAVQVGSIDGRK 562 (893)
T ss_pred EccccC-eEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCe-EEEEEecceEEEEEhhhceeeccccchh
Confidence 999999 999999999999999976544344443 5778999999999985 999999999999999764432111111
Q ss_pred --cCC---CCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 345 --EDG---PPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 345 --~~~---~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
..+ ...............+.+++++||. .+++||..+.|.||++.++.+.
T Consensus 563 D~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~-~IlAgG~sn~iCiY~v~~~vll 617 (893)
T KOG0291|consen 563 DLSGGRKETDRITAENSAKGKTFTTICYSADGK-CILAGGESNSICIYDVPEGVLL 617 (893)
T ss_pred hccccccccceeehhhcccCCceEEEEEcCCCC-EEEecCCcccEEEEECchhhee
Confidence 111 1112222233456799999999999 6888999999999999998653
No 27
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.5e-32 Score=239.77 Aligned_cols=286 Identities=20% Similarity=0.311 Sum_probs=220.9
Q ss_pred EEEEeCC-CCCCCCCCCCCCCCC----CCCCeEEEEEee-cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc
Q 015484 80 IADAVLP-TKDSESNVGGKNENP----VIPKVEIAQKIR-VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ 153 (406)
Q Consensus 80 i~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~-h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 153 (406)
|.++.|. ..+-++.++.++ .. +.|+|+....+. |..-|+|++|+|+| .++|+.+.||+|.+||-.++..
T Consensus 150 ins~~~KpsRPfRi~T~sdD-n~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG-~~Fat~gsDgki~iyDGktge~--- 224 (603)
T KOG0318|consen 150 INSVDFKPSRPFRIATGSDD-NTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDG-SRFATAGSDGKIYIYDGKTGEK--- 224 (603)
T ss_pred EeeeeccCCCceEEEeccCC-CeEEEeeCCCeeeeecccccccceeeEEECCCC-CeEEEecCCccEEEEcCCCccE---
Confidence 3455543 233445544433 22 568888777665 88999999999998 6899999999999999988543
Q ss_pred CCCCCceeee---CCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCcee-------------------------
Q 015484 154 DDCDPDLRLK---GHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVI------------------------- 205 (406)
Q Consensus 154 ~~~~~~~~~~---~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------------------------- 205 (406)
+..+. +|++.|++++|+|++. .++|++.|.+++|||+.+.+..+.+
T Consensus 225 -----vg~l~~~~aHkGsIfalsWsPDs~-~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl 298 (603)
T KOG0318|consen 225 -----VGELEDSDAHKGSIFALSWSPDST-QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSL 298 (603)
T ss_pred -----EEEecCCCCccccEEEEEECCCCc-eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEc
Confidence 44454 8999999999999999 9999999999999999875332111
Q ss_pred ------------eeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-cccC--------------
Q 015484 206 ------------DAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHE-------------- 258 (406)
Q Consensus 206 ------------~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~-------------- 258 (406)
.++..+.+|...|+++..+| ++..|++|+.||.|.-||..++..-... ..|.
T Consensus 299 ~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~ 377 (603)
T KOG0318|consen 299 SGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGEL 377 (603)
T ss_pred CcEEEEecccCCChhheecccccceeEEEEcC-CCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcE
Confidence 22356778999999999999 5699999999999999998654321100 0000
Q ss_pred ------------------------------------------------------------------CCeeEEEecCCCCc
Q 015484 259 ------------------------------------------------------------------KEVNYLSFNPYNEW 272 (406)
Q Consensus 259 ------------------------------------------------------------------~~v~~i~~~~~~~~ 272 (406)
-...+++++|++.
T Consensus 378 ~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~- 456 (603)
T KOG0318|consen 378 FTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGS- 456 (603)
T ss_pred EEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCC-
Confidence 0134677788887
Q ss_pred EEEEEeCCCcEEEEeCCCCC-CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCee
Q 015484 273 VLATASSDTTVALFDMRKMT-VPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPEL 351 (406)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~-~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 351 (406)
.+++|+.||.|++|.+.... ........|.++|++++++|++. +||+|...+.+.+||+.+... .
T Consensus 457 ~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~-yla~~Da~rkvv~yd~~s~~~-------------~ 522 (603)
T KOG0318|consen 457 EVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGA-YLAAGDASRKVVLYDVASREV-------------K 522 (603)
T ss_pred EEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCc-EEEEeccCCcEEEEEcccCce-------------e
Confidence 89999999999999998754 33456778999999999999997 699999999999999987321 1
Q ss_pred EEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 352 LFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 352 ~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
.....-|...|.+++|+|+.. ++|+|+-|..|.||++....
T Consensus 523 ~~~w~FHtakI~~~aWsP~n~-~vATGSlDt~Viiysv~kP~ 563 (603)
T KOG0318|consen 523 TNRWAFHTAKINCVAWSPNNK-LVATGSLDTNVIIYSVKKPA 563 (603)
T ss_pred cceeeeeeeeEEEEEeCCCce-EEEeccccceEEEEEccChh
Confidence 112233889999999999999 89999999999999998653
No 28
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.6e-32 Score=233.67 Aligned_cols=273 Identities=21% Similarity=0.355 Sum_probs=222.9
Q ss_pred EEeCCCCCCCCCCCCCCCCC---CCCCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCC
Q 015484 82 DAVLPTKDSESNVGGKNENP---VIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDP 158 (406)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 158 (406)
.+....++..+.+|..+... ....-.+...-.|+++|.+++|+..| .+|++++.||++.+||..++..
T Consensus 240 ~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~-------- 310 (524)
T KOG0273|consen 240 SLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTV-------- 310 (524)
T ss_pred eEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceE--------
Confidence 56666666666655444100 01111112233599999999999999 7899999999999999987422
Q ss_pred ceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC
Q 015484 159 DLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC 238 (406)
Q Consensus 159 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg 238 (406)
...+.-|..+...|.|-.+. .+++++.||.|+++.+.... |..++.+|.++|+++.|+| .+.+|++++.|+
T Consensus 311 ~q~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~------P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~ 381 (524)
T KOG0273|consen 311 KQQFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDR------PVKTFIGHHGEVNALKWNP-TGSLLASCSDDG 381 (524)
T ss_pred EEeeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCC------cceeeecccCceEEEEECC-CCceEEEecCCC
Confidence 44566688887889998654 59999999999999987643 4577788999999999999 689999999999
Q ss_pred cEEEEECCCCcccccccccCCCeeEEEecCCCC--------cEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEE
Q 015484 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNE--------WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEW 310 (406)
Q Consensus 239 ~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~--------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~ 310 (406)
+++||.+........+.+|...|..+.|+|.|+ ..+++++.|++|++||+..+. ++..+..|+.+|.+++|
T Consensus 382 TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv-~i~~f~kH~~pVysvaf 460 (524)
T KOG0273|consen 382 TLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV-PIHTLMKHQEPVYSVAF 460 (524)
T ss_pred eeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc-eeEeeccCCCceEEEEe
Confidence 999999999999999999999999999999754 379999999999999999865 49999999999999999
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 311 DPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 311 ~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
+|+++ ++|+|+.||.|.||+... .+++....+ .+.|..++|+.+|. .|+.+-.|+.+.+-|+.
T Consensus 461 S~~g~-ylAsGs~dg~V~iws~~~--------------~~l~~s~~~-~~~Ifel~Wn~~G~-kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 461 SPNGR-YLASGSLDGCVHIWSTKT--------------GKLVKSYQG-TGGIFELCWNAAGD-KLGACASDGSVCVLDLR 523 (524)
T ss_pred cCCCc-EEEecCCCCeeEeccccc--------------hheeEeecC-CCeEEEEEEcCCCC-EEEEEecCCCceEEEec
Confidence 99998 599999999999999987 455555554 55699999999998 46666779999998864
No 29
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.9e-32 Score=255.68 Aligned_cols=249 Identities=26% Similarity=0.419 Sum_probs=211.1
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
|...|.++.|+|+| ..+++++.++.+++|+...... .....+.+|...|.+++|+|++. ++++|+.|++|++
T Consensus 158 ~~~sv~~~~fs~~g-~~l~~~~~~~~i~~~~~~~~~~------~~~~~l~~h~~~v~~~~fs~d~~-~l~s~s~D~tiri 229 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDG-RALAAASSDGLIRIWKLEGIKS------NLLRELSGHTRGVSDVAFSPDGS-YLLSGSDDKTLRI 229 (456)
T ss_pred ccCceEEEEEcCCC-CeEEEccCCCcEEEeecccccc------hhhccccccccceeeeEECCCCc-EEEEecCCceEEE
Confidence 36899999999999 4699999999999999965321 23556689999999999999999 9999999999999
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcE
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWV 273 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 273 (406)
||+.... ..+..+.+|...|++++|+|.+ +++++|+.|++|++||+++++++..+.+|...|++++|++++. +
T Consensus 230 wd~~~~~-----~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~-~ 302 (456)
T KOG0266|consen 230 WDLKDDG-----RNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGN-L 302 (456)
T ss_pred eeccCCC-----eEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCC-E
Confidence 9994321 2457788999999999999965 9999999999999999999999999999999999999999999 8
Q ss_pred EEEEeCCCcEEEEeCCCCCC-CcEEecCCCCC--eEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCe
Q 015484 274 LATASSDTTVALFDMRKMTV-PLHILSSHTEE--VFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPE 350 (406)
Q Consensus 274 l~~~~~dg~i~vwd~~~~~~-~~~~~~~h~~~--v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 350 (406)
|++++.|+.|++||+.++.. .+..+..+... ++.+.|+|++. ++++++.|+.+++||+.. ..
T Consensus 303 l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~-~ll~~~~d~~~~~w~l~~--------------~~ 367 (456)
T KOG0266|consen 303 LVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGK-YLLSASLDRTLKLWDLRS--------------GK 367 (456)
T ss_pred EEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCc-EEEEecCCCeEEEEEccC--------------Cc
Confidence 99999999999999998763 24556655555 99999999998 599999999999999997 34
Q ss_pred eEEEecCCCCC---eeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 351 LLFSHGGHKAK---ISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 351 ~~~~~~~h~~~---v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
......+|... +.+...++.+. .+++|+.|+.|++|++.++.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~-~i~sg~~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 368 SVGTYTGHSNLVRCIFSPTLSTGGK-LIYSGSEDGSVYVWDSSSGG 412 (456)
T ss_pred ceeeecccCCcceeEecccccCCCC-eEEEEeCCceEEEEeCCccc
Confidence 44455556553 44455577888 69999999999999999754
No 30
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-33 Score=233.89 Aligned_cols=248 Identities=23% Similarity=0.362 Sum_probs=223.7
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
.-..+|...|..|+|+..| .+||+++.|-.+.+||.+.. ......+.+|...|.++.|-|.|. +|++++.|
T Consensus 144 ~~LrGHt~sv~di~~~a~G-k~l~tcSsDl~~~LWd~~~~-------~~c~ks~~gh~h~vS~V~f~P~gd-~ilS~srD 214 (406)
T KOG0295|consen 144 RSLRGHTDSVFDISFDASG-KYLATCSSDLSAKLWDFDTF-------FRCIKSLIGHEHGVSSVFFLPLGD-HILSCSRD 214 (406)
T ss_pred hhhhccccceeEEEEecCc-cEEEecCCccchhheeHHHH-------HHHHHHhcCcccceeeEEEEecCC-eeeecccc
Confidence 3455899999999999999 68999999999999999873 344677889999999999999997 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
.+|+.|++.++- ++.++.+|...|..++.+- ++.++++++.|.+|++|-+.++++...+..|+.+|-+++|.|
T Consensus 215 ~tik~We~~tg~------cv~t~~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap 287 (406)
T KOG0295|consen 215 NTIKAWECDTGY------CVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAP 287 (406)
T ss_pred cceeEEecccce------eEEeccCchHhEEEEEecC-CeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecc
Confidence 999999999874 4577889999999999985 899999999999999999999999899999999999999987
Q ss_pred CC--------------CcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 269 YN--------------EWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 269 ~~--------------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
.. ..++++++.|++|++||+.++.. +.++.+|...|..++|+|.|+ +|+++.+|+++++||+.+
T Consensus 288 ~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c-L~tL~ghdnwVr~~af~p~Gk-yi~ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 288 ESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC-LFTLVGHDNWVRGVAFSPGGK-YILSCADDKTLRVWDLKN 365 (406)
T ss_pred cccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE-EEEEecccceeeeeEEcCCCe-EEEEEecCCcEEEEEecc
Confidence 51 13899999999999999999766 889999999999999999998 599999999999999997
Q ss_pred CCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 335 IGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
.+++.....|...|+++.|+.+.+ .++||+-|..+++|..
T Consensus 366 --------------~~cmk~~~ah~hfvt~lDfh~~~p-~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 366 --------------LQCMKTLEAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVWEC 405 (406)
T ss_pred --------------ceeeeccCCCcceeEEEecCCCCc-eEEeccccceeeeeec
Confidence 466777788999999999999999 5999999999999964
No 31
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.1e-32 Score=227.04 Aligned_cols=249 Identities=19% Similarity=0.330 Sum_probs=211.1
Q ss_pred EEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec
Q 015484 107 EIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS 186 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 186 (406)
.+.....|++.|.+++.+|+. +++|||+.|...+||++.++ .....+.+|+..|+++.|+.+|. +||||+
T Consensus 56 S~~tF~~H~~svFavsl~P~~-~l~aTGGgDD~AflW~~~~g--------e~~~eltgHKDSVt~~~Fshdgt-lLATGd 125 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNN-NLVATGGGDDLAFLWDISTG--------EFAGELTGHKDSVTCCSFSHDGT-LLATGD 125 (399)
T ss_pred ceeehhhcCCceEEEEeCCCC-ceEEecCCCceEEEEEccCC--------cceeEecCCCCceEEEEEccCce-EEEecC
Confidence 345567899999999999966 79999999999999999984 34778999999999999999999 999999
Q ss_pred CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEe
Q 015484 187 HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSF 266 (406)
Q Consensus 187 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~ 266 (406)
.+|.|+||...++..... +...-..|.-+.||| ...+|++|+.||.+-+|.+..+...+.+.+|..++++-.|
T Consensus 126 msG~v~v~~~stg~~~~~------~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f 198 (399)
T KOG0296|consen 126 MSGKVLVFKVSTGGEQWK------LDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEF 198 (399)
T ss_pred CCccEEEEEcccCceEEE------eecccCceEEEEecc-cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccc
Confidence 999999999998754322 223445678889999 7899999999999999999998888889999999999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCCC----------------------------------------------------
Q 015484 267 NPYNEWVLATASSDTTVALFDMRKMTVP---------------------------------------------------- 294 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~---------------------------------------------------- 294 (406)
.|+|+ .++++..||+|++|++.++...
T Consensus 199 ~pdGK-r~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~ 277 (399)
T KOG0296|consen 199 IPDGK-RILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPE 277 (399)
T ss_pred cCCCc-eEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCcc
Confidence 99999 8999999999999999875321
Q ss_pred ------------------------------------------cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 015484 295 ------------------------------------------LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDL 332 (406)
Q Consensus 295 ------------------------------------------~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~ 332 (406)
++..-.|...|..+.|-+ .. +|++++.+|.|+.||.
T Consensus 278 l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~-~l~t~c~~g~v~~wDa 355 (399)
T KOG0296|consen 278 LKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TD-YLLTACANGKVRQWDA 355 (399)
T ss_pred ccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cc-hheeeccCceEEeeec
Confidence 222334666677777777 33 3667777777777777
Q ss_pred CCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 333 NRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
++ .++++.+.||...|.+++.+|+.+ +++|++.|+..+|+++.
T Consensus 356 Rt--------------G~l~~~y~GH~~~Il~f~ls~~~~-~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 356 RT--------------GQLKFTYTGHQMGILDFALSPQKR-LVVTVSDDNTALVFEVP 398 (399)
T ss_pred cc--------------cceEEEEecCchheeEEEEcCCCc-EEEEecCCCeEEEEecC
Confidence 76 688999999999999999999999 79999999999999875
No 32
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-33 Score=249.32 Aligned_cols=250 Identities=22% Similarity=0.358 Sum_probs=220.8
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
.|+..|.++.|+|..| .++++-..|.|.||+.++. ..+..+.....+|.+..|-+-.+ .+++|+.|..|+
T Consensus 11 ~rSdRVKsVd~HPteP-w~la~LynG~V~IWnyetq--------tmVksfeV~~~PvRa~kfiaRkn-Wiv~GsDD~~Ir 80 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEP-WILAALYNGDVQIWNYETQ--------TMVKSFEVSEVPVRAAKFIARKN-WIVTGSDDMQIR 80 (794)
T ss_pred ccCCceeeeecCCCCc-eEEEeeecCeeEEEecccc--------eeeeeeeecccchhhheeeeccc-eEEEecCCceEE
Confidence 4889999999999997 6777789999999999984 33666777788999999998666 999999999999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC-cccccccccCCCeeEEEecCCCC
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN-QTQQRVKAHEKEVNYLSFNPYNE 271 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~~~~ 271 (406)
+|+.++... +..|..|..-|.+|+.||+ ..+++++++|-.|++||-+.+ .+.+++.+|...|.+++|+|...
T Consensus 81 Vfnynt~ek------V~~FeAH~DyIR~iavHPt-~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ 153 (794)
T KOG0276|consen 81 VFNYNTGEK------VKTFEAHSDYIRSIAVHPT-LPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP 153 (794)
T ss_pred EEeccccee------eEEeeccccceeeeeecCC-CCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc
Confidence 999998754 4778899999999999994 667779999999999998865 45788899999999999999999
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCC-CEEEEEeCCCcEEEEeCCCCCcccccccccCCCCe
Q 015484 272 WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHE-TVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPE 350 (406)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 350 (406)
+.+|+++-|++|+||.+.+.. |..++.+|...|+++.+-+.|. -+|++|+.|.+|+|||..+ ..
T Consensus 154 ntFaS~sLDrTVKVWslgs~~-~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt--------------k~ 218 (794)
T KOG0276|consen 154 NTFASASLDRTVKVWSLGSPH-PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT--------------KS 218 (794)
T ss_pred cceeeeeccccEEEEEcCCCC-CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch--------------HH
Confidence 899999999999999999854 5899999999999999987652 2699999999999999987 57
Q ss_pred eEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 351 LLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 351 ~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
++.++.||...|..+.|+|.-+ +++||++||+++||+-.+-.++
T Consensus 219 CV~TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty~lE 262 (794)
T KOG0276|consen 219 CVQTLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSKTYKLE 262 (794)
T ss_pred HHHHhhcccccceEEEecCCCc-EEEEecCCccEEEecCcceehh
Confidence 7888899999999999999999 8999999999999998775544
No 33
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7e-33 Score=234.99 Aligned_cols=276 Identities=16% Similarity=0.259 Sum_probs=215.4
Q ss_pred EEeCCCCCCCCCCCCCC------CCCCCCCeEEEE-EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccC
Q 015484 82 DAVLPTKDSESNVGGKN------ENPVIPKVEIAQ-KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQD 154 (406)
Q Consensus 82 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 154 (406)
-+.|+++++.++++..+ +...+..+++.+ ..+|..+|.-|.|+|+. ++|++|+.+-.+.+||..++..
T Consensus 229 fl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDd-ryLlaCg~~e~~~lwDv~tgd~---- 303 (519)
T KOG0293|consen 229 FLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDD-RYLLACGFDEVLSLWDVDTGDL---- 303 (519)
T ss_pred EEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCC-CeEEecCchHheeeccCCcchh----
Confidence 44555555555543322 111334466554 45799999999999999 5677788888899999998533
Q ss_pred CCCCceee-eCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeecc-CccEEEEEeeCCCCCEEE
Q 015484 155 DCDPDLRL-KGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAH-ESVVEDVSWHLKNENLFG 232 (406)
Q Consensus 155 ~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~p~~~~~l~ 232 (406)
...+ .+|...+.+++|.|+|. .+++|+.|+++..||++.... ..+.+. ...|.+++..+ +++.++
T Consensus 304 ----~~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn~~-------~~W~gvr~~~v~dlait~-Dgk~vl 370 (519)
T KOG0293|consen 304 ----RHLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGNIL-------GNWEGVRDPKVHDLAITY-DGKYVL 370 (519)
T ss_pred ----hhhcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcchh-------hcccccccceeEEEEEcC-CCcEEE
Confidence 2222 23567899999999999 899999999999999976421 112221 24689999998 677777
Q ss_pred EEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCC--eEEEEE
Q 015484 233 SAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEE--VFQVEW 310 (406)
Q Consensus 233 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~--v~~i~~ 310 (406)
+.+.|..|++++..+......+. ...+|++++.+.++. ++++.-.+..+++||+..... +..+.+|+.. +..-+|
T Consensus 371 ~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k-~~LvnL~~qei~LWDl~e~~l-v~kY~Ghkq~~fiIrSCF 447 (519)
T KOG0293|consen 371 LVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGK-LALVNLQDQEIHLWDLEENKL-VRKYFGHKQGHFIIRSCF 447 (519)
T ss_pred EEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCc-EEEEEcccCeeEEeecchhhH-HHHhhcccccceEEEecc
Confidence 88899999999988766554443 567899999999999 777788899999999996444 7778888764 555577
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 311 DPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 311 ~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
-.....++++|++|+.|+||+..+ ..++..+.||...|++++|+|..+.++||+|.||+|+||.+.
T Consensus 448 gg~~~~fiaSGSED~kvyIWhr~s--------------gkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 448 GGGNDKFIASGSEDSKVYIWHRIS--------------GKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CCCCcceEEecCCCceEEEEEccC--------------CceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 766667899999999999999887 578899999999999999999999999999999999999887
Q ss_pred Cc
Q 015484 391 DS 392 (406)
Q Consensus 391 ~~ 392 (406)
..
T Consensus 514 ~~ 515 (519)
T KOG0293|consen 514 DN 515 (519)
T ss_pred cc
Confidence 54
No 34
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.5e-32 Score=215.72 Aligned_cols=240 Identities=16% Similarity=0.313 Sum_probs=203.6
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCcee
Q 015484 126 QKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVI 205 (406)
Q Consensus 126 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 205 (406)
+.+-+|++++.|.+|++|...+ ..+..+++...+.|..+...|+++ .|++|+. ..|++||+++.+..
T Consensus 8 d~~viLvsA~YDhTIRfWqa~t--------G~C~rTiqh~dsqVNrLeiTpdk~-~LAaa~~-qhvRlyD~~S~np~--- 74 (311)
T KOG0315|consen 8 DDPVILVSAGYDHTIRFWQALT--------GICSRTIQHPDSQVNRLEITPDKK-DLAAAGN-QHVRLYDLNSNNPN--- 74 (311)
T ss_pred CCceEEEeccCcceeeeeehhc--------CeEEEEEecCccceeeEEEcCCcc-hhhhccC-CeeEEEEccCCCCC---
Confidence 3456899999999999999988 455778888889999999999988 8888865 68999999997643
Q ss_pred eeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEE
Q 015484 206 DAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVAL 285 (406)
Q Consensus 206 ~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~v 285 (406)
++..+.+|...|+++.|.. +++.+++|++||+++|||+|...+.+.+. +..+|+++..+|+.. -|++|..+|.|++
T Consensus 75 -Pv~t~e~h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQt-eLis~dqsg~irv 150 (311)
T KOG0315|consen 75 -PVATFEGHTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQT-ELISGDQSGNIRV 150 (311)
T ss_pred -ceeEEeccCCceEEEEEee-cCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcc-eEEeecCCCcEEE
Confidence 5678899999999999997 79999999999999999999966655555 679999999999887 8999999999999
Q ss_pred EeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeE
Q 015484 286 FDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDF 365 (406)
Q Consensus 286 wd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 365 (406)
||++.....-..+..-...|.++...|+|. +|+++...|..++|++-. ... ..+.+++..++.|...+..+
T Consensus 151 WDl~~~~c~~~liPe~~~~i~sl~v~~dgs-ml~a~nnkG~cyvW~l~~-~~~-------~s~l~P~~k~~ah~~~il~C 221 (311)
T KOG0315|consen 151 WDLGENSCTHELIPEDDTSIQSLTVMPDGS-MLAAANNKGNCYVWRLLN-HQT-------ASELEPVHKFQAHNGHILRC 221 (311)
T ss_pred EEccCCccccccCCCCCcceeeEEEcCCCc-EEEEecCCccEEEEEccC-CCc-------cccceEhhheecccceEEEE
Confidence 999986543333444557899999999997 689999999999999976 211 12345666788999999999
Q ss_pred EeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 366 SWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 366 ~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.+||+++ .||+++.|..++||+.++-
T Consensus 222 ~lSPd~k-~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 222 LLSPDVK-YLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred EECCCCc-EEEeecCCceEEEEecCCc
Confidence 9999999 5999999999999999877
No 35
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.3e-31 Score=268.14 Aligned_cols=260 Identities=20% Similarity=0.320 Sum_probs=210.0
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
.|.+.|++++|+|++ .+||+|+.|+.|+||+.............+...+. +...+.+++|++....+|++++.||+|+
T Consensus 481 ~~~~~V~~i~fs~dg-~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 481 NSSNLVCAIGFDRDG-EFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred CCCCcEEEEEECCCC-CEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 488999999999998 68999999999999998642111101112233333 3567999999986555999999999999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCc
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEW 272 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 272 (406)
+||+.+++ .+..+.+|...|++++|+|.++.+|++|+.||.|++||++++..+..+.. ...+.++.|++....
T Consensus 559 lWd~~~~~------~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~-~~~v~~v~~~~~~g~ 631 (793)
T PLN00181 559 VWDVARSQ------LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT-KANICCVQFPSESGR 631 (793)
T ss_pred EEECCCCe------EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec-CCCeEEEEEeCCCCC
Confidence 99998753 23556789999999999986788999999999999999999888777764 467899999654333
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeE
Q 015484 273 VLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELL 352 (406)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (406)
+|++|+.||.|++||+++...++..+.+|...|.++.|. ++. .|++++.|+.|+|||++..... .....+
T Consensus 632 ~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~-~lvs~s~D~~ikiWd~~~~~~~--------~~~~~l 701 (793)
T PLN00181 632 SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS-TLVSSSTDNTLKLWDLSMSISG--------INETPL 701 (793)
T ss_pred EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCC-EEEEEECCCEEEEEeCCCCccc--------cCCcce
Confidence 999999999999999998776678888999999999997 444 6999999999999999752110 012456
Q ss_pred EEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 353 FSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 353 ~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
..+.+|...+..++|+|++. +|++|+.|+.|++|+....
T Consensus 702 ~~~~gh~~~i~~v~~s~~~~-~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 702 HSFMGHTNVKNFVGLSVSDG-YIATGSETNEVFVYHKAFP 740 (793)
T ss_pred EEEcCCCCCeeEEEEcCCCC-EEEEEeCCCEEEEEECCCC
Confidence 67889999999999999998 6999999999999997644
No 36
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.4e-32 Score=230.85 Aligned_cols=258 Identities=22% Similarity=0.384 Sum_probs=217.5
Q ss_pred EEEeecCCceeEEEEcCCC--CcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec
Q 015484 109 AQKIRVDGEVNRARCMPQK--PNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS 186 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 186 (406)
....+|.++|.+++|.-.+ ...|++++.|.++++|..+.+... ........||...|-+++..+++. .+++|+
T Consensus 138 ~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~----~~~~~~~~GHk~~V~sVsv~~sgt-r~~SgS 212 (423)
T KOG0313|consen 138 KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK----VKALKVCRGHKRSVDSVSVDSSGT-RFCSGS 212 (423)
T ss_pred EEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh----hhHHhHhcccccceeEEEecCCCC-eEEeec
Confidence 4566899999998887543 236999999999999999875442 223344459999999999999998 999999
Q ss_pred CCCeEEEEeCCCc-------------------cCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCC
Q 015484 187 HDNKICLWDVSAL-------------------AQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT 247 (406)
Q Consensus 187 ~dg~i~iwd~~~~-------------------~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~ 247 (406)
.|.+|.+|+..+. +....-.++..+.+|..+|.++.|++ ...+++++.|.+|+.||+.+
T Consensus 213 ~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDlet 290 (423)
T KOG0313|consen 213 WDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLET 290 (423)
T ss_pred ccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeec
Confidence 9999999994321 01112245677899999999999996 67788999999999999999
Q ss_pred CcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC--CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 015484 248 NQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT--VPLHILSSHTEEVFQVEWDPNHETVLASSADDR 325 (406)
Q Consensus 248 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg 325 (406)
+....++. ....+++++.+|... +|++|+.|..|++||.|++. .+...+.+|++.|.++.|+|...++|++++.|+
T Consensus 291 g~~~~~~~-~~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~ 368 (423)
T KOG0313|consen 291 GGLKSTLT-TNKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN 368 (423)
T ss_pred ccceeeee-cCcceeEeecccccc-eeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCC
Confidence 99888776 356789999999888 99999999999999999864 346778999999999999999999999999999
Q ss_pred cEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 326 RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 326 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
++++||++. +...++.+.+|...|.++.|+..+ .+++||.|+.|+|+.-.
T Consensus 369 t~klWDvRS-------------~k~plydI~~h~DKvl~vdW~~~~--~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 369 TVKLWDVRS-------------TKAPLYDIAGHNDKVLSVDWNEGG--LIVSGGADNKLRIFKGS 418 (423)
T ss_pred eEEEEEecc-------------CCCcceeeccCCceEEEEeccCCc--eEEeccCcceEEEeccc
Confidence 999999998 234788899999999999999765 59999999999998754
No 37
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.8e-30 Score=229.43 Aligned_cols=280 Identities=24% Similarity=0.397 Sum_probs=228.3
Q ss_pred CCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCCc
Q 015484 38 WPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGE 117 (406)
Q Consensus 38 ~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 117 (406)
-|..++.|.|+. ..++.|+. .+.+.++++.-. -.......|...
T Consensus 10 ~~i~~~~~~~~~------------~~l~~~~~-----~g~i~i~~~~~~-------------------~~~~~~~~~~~~ 53 (289)
T cd00200 10 GGVTCVAFSPDG------------KLLATGSG-----DGTIKVWDLETG-------------------ELLRTLKGHTGP 53 (289)
T ss_pred CCEEEEEEcCCC------------CEEEEeec-----CcEEEEEEeeCC-------------------CcEEEEecCCcc
Confidence 478899998741 24555553 467888765511 012334568889
Q ss_pred eeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCC
Q 015484 118 VNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVS 197 (406)
Q Consensus 118 v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~ 197 (406)
+..+.|+|++ .++++++.+|.|++|++... .....+..|...+.++.|++++. ++++++.+|.|.+||+.
T Consensus 54 i~~~~~~~~~-~~l~~~~~~~~i~i~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~ 123 (289)
T cd00200 54 VRDVAASADG-TYLASGSSDKTIRLWDLETG--------ECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVE 123 (289)
T ss_pred eeEEEECCCC-CEEEEEcCCCeEEEEEcCcc--------cceEEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECC
Confidence 9999999998 67999999999999999873 33566778999999999999866 88888889999999998
Q ss_pred CccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEE
Q 015484 198 ALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATA 277 (406)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~ 277 (406)
+.+. ...+..|...+.+++|+| ++.++++++.+|.|++||+++++....+..+...+.+++|+|++. .++++
T Consensus 124 ~~~~------~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~ 195 (289)
T cd00200 124 TGKC------LTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGE-KLLSS 195 (289)
T ss_pred CcEE------EEEeccCCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcC-EEEEe
Confidence 6432 344557888999999998 478887877799999999998888888888888999999999998 78888
Q ss_pred eCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecC
Q 015484 278 SSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG 357 (406)
Q Consensus 278 ~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (406)
+.++.|++||++.... +..+..|...+.++.|+|++. ++++++.||.|++||+.. ......+.+
T Consensus 196 ~~~~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~~--------------~~~~~~~~~ 259 (289)
T cd00200 196 SSDGTIKLWDLSTGKC-LGTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRT--------------GECVQTLSG 259 (289)
T ss_pred cCCCcEEEEECCCCce-ecchhhcCCceEEEEEcCCCc-EEEEEcCCCcEEEEEcCC--------------ceeEEEccc
Confidence 8899999999987544 666778889999999999964 688888899999999976 244555668
Q ss_pred CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 358 HKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 358 h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
|...|.+++|+|+++ .+++++.||.|++|+
T Consensus 260 ~~~~i~~~~~~~~~~-~l~~~~~d~~i~iw~ 289 (289)
T cd00200 260 HTNSVTSLAWSPDGK-RLASGSADGTIRIWD 289 (289)
T ss_pred cCCcEEEEEECCCCC-EEEEecCCCeEEecC
Confidence 888999999999988 688999999999996
No 38
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.5e-32 Score=248.56 Aligned_cols=257 Identities=22% Similarity=0.408 Sum_probs=221.8
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
+..+..++|..++|.....++||+++..+.+++|++.+.. ...+.+|+..|.+++...+|. +|+||+.|.
T Consensus 318 ~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~---------c~ii~GH~e~vlSL~~~~~g~-llat~sKD~ 387 (775)
T KOG0319|consen 318 QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSY---------CQIIPGHTEAVLSLDVWSSGD-LLATGSKDK 387 (775)
T ss_pred hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCc---------eEEEeCchhheeeeeecccCc-EEEEecCCc
Confidence 3446789999999987655789999999999999887732 237889999999999555576 999999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc---------cccccccCCC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT---------QQRVKAHEKE 260 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~---------~~~~~~~~~~ 260 (406)
++++|.+++... ...++....+|...|.+++++..+..+|++++.|+++++|++...+. ......|...
T Consensus 388 svilWr~~~~~~--~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKd 465 (775)
T KOG0319|consen 388 SVILWRLNNNCS--KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKD 465 (775)
T ss_pred eEEEEEecCCcc--hhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhccc
Confidence 999999955432 23345667889999999999887889999999999999999986221 1123679999
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccc
Q 015484 261 VNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL 340 (406)
Q Consensus 261 v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 340 (406)
|++++.+|+.. ++|||+.|.+.+||++..... ...+.+|+..|.++.|+|..+ +++|+|.|++|+||.+.+
T Consensus 466 IN~Vaia~ndk-LiAT~SqDktaKiW~le~~~l-~~vLsGH~RGvw~V~Fs~~dq-~laT~SgD~TvKIW~is~------ 536 (775)
T KOG0319|consen 466 INCVAIAPNDK-LIATGSQDKTAKIWDLEQLRL-LGVLSGHTRGVWCVSFSKNDQ-LLATCSGDKTVKIWSIST------ 536 (775)
T ss_pred ccceEecCCCc-eEEecccccceeeecccCceE-EEEeeCCccceEEEEeccccc-eeEeccCCceEEEEEecc------
Confidence 99999999998 999999999999999996544 889999999999999999986 799999999999999997
Q ss_pred cccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCC
Q 015484 341 ELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRD 396 (406)
Q Consensus 341 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 396 (406)
..++.++.||...|..+.|-.++. .|+|++.||.|++|++.++.+..
T Consensus 537 --------fSClkT~eGH~~aVlra~F~~~~~-qliS~~adGliKlWnikt~eC~~ 583 (775)
T KOG0319|consen 537 --------FSCLKTFEGHTSAVLRASFIRNGK-QLISAGADGLIKLWNIKTNECEM 583 (775)
T ss_pred --------ceeeeeecCccceeEeeeeeeCCc-EEEeccCCCcEEEEeccchhhhh
Confidence 688899999999999999999999 68999999999999999997754
No 39
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.1e-33 Score=255.10 Aligned_cols=248 Identities=24% Similarity=0.405 Sum_probs=217.5
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
-+..|..++|+|..| .++++--.|.|++||.+- +..+..+..|.++|.+++|+|.++ ++++|+.|-.|++
T Consensus 8 kSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM--------~tli~rFdeHdGpVRgv~FH~~qp-lFVSGGDDykIkV 77 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRM--------GTLIDRFDEHDGPVRGVDFHPTQP-LFVSGGDDYKIKV 77 (1202)
T ss_pred ccccccceecCCCCC-EEEEeecCceeeeehhhh--------hhHHhhhhccCCccceeeecCCCC-eEEecCCccEEEE
Confidence 457899999999996 688889999999999987 344778899999999999999999 9999999999999
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcE
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWV 273 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 273 (406)
|+..+.+ ++.++.+|-.-|..+.||+ .-..++++++|.+|+||+..+++++..+.+|...|.|.+|+|... +
T Consensus 78 WnYk~rr------clftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED-l 149 (1202)
T KOG0292|consen 78 WNYKTRR------CLFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED-L 149 (1202)
T ss_pred Eecccce------ehhhhccccceeEEeeccC-CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccc-e
Confidence 9998754 4577789999999999998 667788999999999999999999999999999999999999888 9
Q ss_pred EEEEeCCCcEEEEeCCCCCC----------------------------CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 015484 274 LATASSDTTVALFDMRKMTV----------------------------PLHILSSHTEEVFQVEWDPNHETVLASSADDR 325 (406)
Q Consensus 274 l~~~~~dg~i~vwd~~~~~~----------------------------~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg 325 (406)
+++++-|.+|+|||+..... ..+.+.+|...|+-++|+|.-+ ++++|+.|.
T Consensus 150 IVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDR 228 (1202)
T KOG0292|consen 150 IVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDR 228 (1202)
T ss_pred EEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcc
Confidence 99999999999999864221 1245678999999999999998 799999999
Q ss_pred cEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 326 RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 326 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
.|++|.+.... .--+-+..||.+.|.++-|+|... ++.|.|+|++|+|||+....
T Consensus 229 qVKlWrmnetK------------aWEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 229 QVKLWRMNETK------------AWEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred eeeEEEecccc------------ceeehhhhcccCCcceEEecCccc-eeEecCCCccEEEEeccccc
Confidence 99999987521 122345679999999999999877 89999999999999998763
No 40
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.1e-31 Score=218.97 Aligned_cols=243 Identities=23% Similarity=0.385 Sum_probs=209.3
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeE
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKI 191 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 191 (406)
.+|+++|..+.|++++ +.|++++.|.+|+.||.+++ +....+++|..-|.++.-+.-|..++.+|+.||++
T Consensus 87 kgHsgAVM~l~~~~d~-s~i~S~gtDk~v~~wD~~tG--------~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~ 157 (338)
T KOG0265|consen 87 KGHSGAVMELHGMRDG-SHILSCGTDKTVRGWDAETG--------KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTL 157 (338)
T ss_pred ccccceeEeeeeccCC-CEEEEecCCceEEEEecccc--------eeeehhccccceeeecCccccCCeEEEecCCCceE
Confidence 3899999999999999 67999999999999999984 44778899999999999666677688999999999
Q ss_pred EEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCC
Q 015484 192 CLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNE 271 (406)
Q Consensus 192 ~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~ 271 (406)
++||+++.... +++ ..+..++++.|.. ....+.+|+-|+.|++||++.+.....+.+|...|+.+..+|.|.
T Consensus 158 kl~D~R~k~~~------~t~-~~kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs 229 (338)
T KOG0265|consen 158 KLWDIRKKEAI------KTF-ENKYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGS 229 (338)
T ss_pred EEEeecccchh------hcc-ccceeEEEEEecc-cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCC
Confidence 99999975433 222 2356799999995 566777999999999999999999999999999999999999999
Q ss_pred cEEEEEeCCCcEEEEeCCCCC---CCcEEecCCCC----CeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc
Q 015484 272 WVLATASSDTTVALFDMRKMT---VPLHILSSHTE----EVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~h~~----~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 344 (406)
++.+-+.|.++++||+|-.. ..+..+.+|.. ....++|+|++. .+.+|+.|..+++||...
T Consensus 230 -~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~-~i~ags~dr~vyvwd~~~---------- 297 (338)
T KOG0265|consen 230 -FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGT-KITAGSADRFVYVWDTTS---------- 297 (338)
T ss_pred -ccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCC-ccccccccceEEEeeccc----------
Confidence 89999999999999998643 22566666543 466789999997 599999999999999876
Q ss_pred cCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 345 EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 345 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
...++.+.||.+.|..+.|+|..+ +|.+++.|.+|.+=.
T Consensus 298 ----r~~lyklpGh~gsvn~~~Fhp~e~-iils~~sdk~i~lge 336 (338)
T KOG0265|consen 298 ----RRILYKLPGHYGSVNEVDFHPTEP-IILSCSSDKTIYLGE 336 (338)
T ss_pred ----ccEEEEcCCcceeEEEeeecCCCc-EEEEeccCceeEeec
Confidence 578899999999999999999999 899999999988743
No 41
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.2e-32 Score=213.74 Aligned_cols=247 Identities=21% Similarity=0.256 Sum_probs=210.6
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
...-.|+++|+.++|+-+| ++.++++.|.+|++|+... ...++++.+|..+|..++.+.++. .|++|+.|
T Consensus 11 ~~l~~~qgaV~avryN~dG-nY~ltcGsdrtvrLWNp~r--------g~liktYsghG~EVlD~~~s~Dns-kf~s~GgD 80 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDG-NYCLTCGSDRTVRLWNPLR--------GALIKTYSGHGHEVLDAALSSDNS-KFASCGGD 80 (307)
T ss_pred eeecccccceEEEEEccCC-CEEEEcCCCceEEeecccc--------cceeeeecCCCceeeecccccccc-ccccCCCC
Confidence 3344689999999999999 7899999999999999987 345889999999999999999888 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC--cccccccccCCCeeEEEe
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN--QTQQRVKAHEKEVNYLSF 266 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~i~~ 266 (406)
..+.+||+++++. .+.+.+|.+.|+.++|+. ....+++|+-|.++++||.|+. ++++.+......|.++..
T Consensus 81 k~v~vwDV~TGkv------~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v 153 (307)
T KOG0316|consen 81 KAVQVWDVNTGKV------DRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV 153 (307)
T ss_pred ceEEEEEcccCee------eeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe
Confidence 9999999999864 467789999999999997 7899999999999999999875 567888778889999998
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC
Q 015484 267 NPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED 346 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 346 (406)
+.. .+++|+.||+++.||+|.+... ...-..+|++++|+++++ ..++++.|+++++.|-.+
T Consensus 154 ~~h---eIvaGS~DGtvRtydiR~G~l~---sDy~g~pit~vs~s~d~n-c~La~~l~stlrLlDk~t------------ 214 (307)
T KOG0316|consen 154 AEH---EIVAGSVDGTVRTYDIRKGTLS---SDYFGHPITSVSFSKDGN-CSLASSLDSTLRLLDKET------------ 214 (307)
T ss_pred ccc---EEEeeccCCcEEEEEeecceee---hhhcCCcceeEEecCCCC-EEEEeeccceeeecccch------------
Confidence 743 7999999999999999987642 223357899999999997 688899999999999887
Q ss_pred CCCeeEEEecCCCCCee--eEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 347 GPPELLFSHGGHKAKIS--DFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 347 ~~~~~~~~~~~h~~~v~--~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.+++..+.||...=. +.+++.... .+++|++||.|.+||+.++..
T Consensus 215 --GklL~sYkGhkn~eykldc~l~qsdt-hV~sgSEDG~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 215 --GKLLKSYKGHKNMEYKLDCCLNQSDT-HVFSGSEDGKVYFWDLVDETQ 261 (307)
T ss_pred --hHHHHHhcccccceeeeeeeecccce-eEEeccCCceEEEEEecccee
Confidence 567777888876544 445565555 799999999999999987743
No 42
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.2e-31 Score=250.30 Aligned_cols=245 Identities=24% Similarity=0.411 Sum_probs=210.0
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeE
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKI 191 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 191 (406)
.+|...|++++|+|++ .++++++.|++|+|||+.. ......++.+|...|++++|+|.+. ++++|+.|++|
T Consensus 200 ~~h~~~v~~~~fs~d~-~~l~s~s~D~tiriwd~~~-------~~~~~~~l~gH~~~v~~~~f~p~g~-~i~Sgs~D~tv 270 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDG-SYLLSGSDDKTLRIWDLKD-------DGRNLKTLKGHSTYVTSVAFSPDGN-LLVSGSDDGTV 270 (456)
T ss_pred cccccceeeeEECCCC-cEEEEecCCceEEEeeccC-------CCeEEEEecCCCCceEEEEecCCCC-EEEEecCCCcE
Confidence 5799999999999999 5899999999999999944 2345788999999999999999995 99999999999
Q ss_pred EEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCc--ccccccccCC--CeeEEEec
Q 015484 192 CLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ--TQQRVKAHEK--EVNYLSFN 267 (406)
Q Consensus 192 ~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~--~v~~i~~~ 267 (406)
++||++++. +...+.+|...|++++|++ ++++|++++.|+.|++||+.++. +...+..+.. ++++++|+
T Consensus 271 riWd~~~~~------~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fs 343 (456)
T KOG0266|consen 271 RIWDVRTGE------CVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFS 343 (456)
T ss_pred EEEeccCCe------EEEeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEEC
Confidence 999999853 4577789999999999998 78899999999999999999998 4556644444 59999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCC---eEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc
Q 015484 268 PYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEE---VFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~---v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 344 (406)
|++. ++++++.|+.+++||++.... +....+|... +.+...++.+. ++++|+.|+.|.+||+.+
T Consensus 344 p~~~-~ll~~~~d~~~~~w~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~i~sg~~d~~v~~~~~~s---------- 410 (456)
T KOG0266|consen 344 PNGK-YLLSASLDRTLKLWDLRSGKS-VGTYTGHSNLVRCIFSPTLSTGGK-LIYSGSEDGSVYVWDSSS---------- 410 (456)
T ss_pred CCCc-EEEEecCCCeEEEEEccCCcc-eeeecccCCcceeEecccccCCCC-eEEEEeCCceEEEEeCCc----------
Confidence 9999 999999999999999998766 6677777764 33445566776 699999999999999987
Q ss_pred cCCCCeeEEEecCC-CCCeeeEEeCCCCCcEEEEEe--CCCcEEEEeCC
Q 015484 345 EDGPPELLFSHGGH-KAKISDFSWNKNDPWVISSVA--DDNTVQVWQMT 390 (406)
Q Consensus 345 ~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~~l~s~~--~dg~i~iw~~~ 390 (406)
...+..+.+| ...+..+.|+|..+ ++++++ .|+.+++|...
T Consensus 411 ----~~~~~~l~~h~~~~~~~~~~~~~~~-~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 411 ----GGILQRLEGHSKAAVSDLSSHPTEN-LIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ----cchhhhhcCCCCCceeccccCCCcC-eeeecCcCCCceEEEecCC
Confidence 3455566788 88899999999998 688887 78999999864
No 43
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.3e-33 Score=233.15 Aligned_cols=235 Identities=18% Similarity=0.343 Sum_probs=203.6
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
-...|.|+.+.. ..+++|..|++|+|||..+ ......+.||++.|.|+.|. .+ .|++|+.|.+|++
T Consensus 196 ~skgVYClQYDD---~kiVSGlrDnTikiWD~n~--------~~c~~~L~GHtGSVLCLqyd--~r-viisGSSDsTvrv 261 (499)
T KOG0281|consen 196 NSKGVYCLQYDD---EKIVSGLRDNTIKIWDKNS--------LECLKILTGHTGSVLCLQYD--ER-VIVSGSSDSTVRV 261 (499)
T ss_pred cCCceEEEEecc---hhhhcccccCceEEecccc--------HHHHHhhhcCCCcEEeeecc--ce-EEEecCCCceEEE
Confidence 346899999865 3599999999999999988 44477899999999999996 44 9999999999999
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc---cccccccCCCeeEEEecCCC
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT---QQRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~i~~~~~~ 270 (406)
||++++.. +.++..|...|..+.|+ +.++++++.|.++.+||+..... ...+.+|...|+.+.|+.
T Consensus 262 WDv~tge~------l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~-- 330 (499)
T KOG0281|consen 262 WDVNTGEP------LNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD-- 330 (499)
T ss_pred EeccCCch------hhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--
Confidence 99999854 46667899999999997 57888999999999999987654 344588999999999974
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCe
Q 015484 271 EWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPE 350 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 350 (406)
+ ++++++.|.+|++|++.+.+. +.++.+|+..|.|+.+. + .++++|+.|.+|++||+.. ..
T Consensus 331 k-yIVsASgDRTikvW~~st~ef-vRtl~gHkRGIAClQYr--~-rlvVSGSSDntIRlwdi~~--------------G~ 391 (499)
T KOG0281|consen 331 K-YIVSASGDRTIKVWSTSTCEF-VRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIEC--------------GA 391 (499)
T ss_pred c-eEEEecCCceEEEEeccceee-ehhhhcccccceehhcc--C-eEEEecCCCceEEEEeccc--------------cH
Confidence 3 999999999999999999776 89999999999999875 4 3899999999999999987 56
Q ss_pred eEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 351 LLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 351 ~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
++..+.||..-|.++.|... .+++|+.||+|+|||+..+.-.
T Consensus 392 cLRvLeGHEeLvRciRFd~k---rIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 392 CLRVLEGHEELVRCIRFDNK---RIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred HHHHHhchHHhhhheeecCc---eeeeccccceEEEEecccccCC
Confidence 77788999999999999854 5899999999999999887643
No 44
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=8.4e-31 Score=262.26 Aligned_cols=259 Identities=17% Similarity=0.260 Sum_probs=204.1
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
.+.+...|.+++|+|....+||+++.||+|+|||+.+. .....+.+|...|++++|+|.+..+|++|+.||+
T Consensus 528 ~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~--------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 528 ELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS--------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGS 599 (793)
T ss_pred EecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC--------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCE
Confidence 34456789999999875578999999999999999873 3356778999999999999744339999999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCc-ccccccccCCCeeEEEecCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ-TQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~i~~~~~ 269 (406)
|++||+.++.. +..+.. ...+.++.|++.++.+|++|+.||.|++||++..+ ....+.+|...|.++.|. +
T Consensus 600 v~iWd~~~~~~------~~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~ 671 (793)
T PLN00181 600 VKLWSINQGVS------IGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-D 671 (793)
T ss_pred EEEEECCCCcE------EEEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-C
Confidence 99999987543 233333 46799999987678999999999999999998765 456677899999999997 4
Q ss_pred CCcEEEEEeCCCcEEEEeCCCC-----CCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc
Q 015484 270 NEWVLATASSDTTVALFDMRKM-----TVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 344 (406)
+. +|++++.|+.|++||++.. ..++..+.+|...+..++|+|+++ +|++|+.|+.|++|+.......... ..
T Consensus 672 ~~-~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~-~lasgs~D~~v~iw~~~~~~~~~s~-~~ 748 (793)
T PLN00181 672 SS-TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDG-YIATGSETNEVFVYHKAFPMPVLSY-KF 748 (793)
T ss_pred CC-EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCC-EEEEEeCCCEEEEEECCCCCceEEE-ec
Confidence 55 8999999999999999853 245788999999999999999987 7999999999999997653211000 00
Q ss_pred cCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 345 EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 345 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
.......-.....|...|.+++|+|++. .|++|+.||.|+||++
T Consensus 749 ~~~~~~~~~~~~~~~~~V~~v~ws~~~~-~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 749 KTIDPVSGLEVDDASQFISSVCWRGQSS-TLVAANSTGNIKILEM 792 (793)
T ss_pred ccCCcccccccCCCCcEEEEEEEcCCCC-eEEEecCCCcEEEEec
Confidence 0000000011234566799999999999 6899999999999986
No 45
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=100.00 E-value=2.5e-31 Score=215.81 Aligned_cols=311 Identities=20% Similarity=0.323 Sum_probs=237.2
Q ss_pred eEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCC---
Q 015484 61 VHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSS--- 137 (406)
Q Consensus 61 ~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~d--- 137 (406)
-.+|++||+..+.. |+|.+..++ +++ ..+.....+.|.++|..++-+|..+.+|+++..+
T Consensus 26 ~icFlvgTnslK~d-NqVhll~~d--~e~--------------s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~ 88 (370)
T KOG1007|consen 26 HICFLVGTNSLKED-NQVHLLRLD--SEG--------------SELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSD 88 (370)
T ss_pred ceEEEEeccccCCc-ceeEEEEec--Ccc--------------chhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCC
Confidence 35899999987655 999977555 122 2233344556789999999999988999998763
Q ss_pred ----CeEEEEeCCCcccccc-CCCCCceeee-CCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCC-ceeeeeee
Q 015484 138 ----CEVYVFDCAKQAEKQQ-DDCDPDLRLK-GHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQD-KVIDAMHV 210 (406)
Q Consensus 138 ----g~i~iw~~~~~~~~~~-~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~ 210 (406)
-.+.||.+........ ..+..+..+. .+-+.|.|+.|.|++. .+++-. |..|.+|++...... ..+. ...
T Consensus 89 s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~-klasm~-dn~i~l~~l~ess~~vaev~-ss~ 165 (370)
T KOG1007|consen 89 SGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD-KLASMD-DNNIVLWSLDESSKIVAEVL-SSE 165 (370)
T ss_pred CcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC-eeEEec-cCceEEEEcccCcchheeec-ccc
Confidence 2478999987543211 1233344444 3456899999999887 777765 889999999887542 1111 111
Q ss_pred eeccCccEEEEEeeCC-CCCEEEEEecCCcEEEEECCCCcccccc-cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeC
Q 015484 211 YEAHESVVEDVSWHLK-NENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDM 288 (406)
Q Consensus 211 ~~~~~~~i~~i~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~ 288 (406)
-..+....++-+|+|. +++.+ ....|+++..||+|+.+....+ .+|...|..+.|+|+.+.+|++|+.||.|++||.
T Consensus 166 s~e~~~~ftsg~WspHHdgnqv-~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~ 244 (370)
T KOG1007|consen 166 SAEMRHSFTSGAWSPHHDGNQV-ATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDT 244 (370)
T ss_pred cccccceecccccCCCCccceE-EEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEec
Confidence 1235667888899994 45555 4566899999999998877666 7889999999999999999999999999999999
Q ss_pred CCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc-----------c----CCCCeeEE
Q 015484 289 RKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA-----------E----DGPPELLF 353 (406)
Q Consensus 289 ~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----------~----~~~~~~~~ 353 (406)
|+.+.|+..+.+|...|.++.|+|....++++++.|..|.+|.......++..... + .-+...+.
T Consensus 245 R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ 324 (370)
T KOG1007|consen 245 RKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLE 324 (370)
T ss_pred cCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccc
Confidence 99999999999999999999999999889999999999999988765432211100 0 01123455
Q ss_pred EecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 354 SHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 354 ~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
++..|...|++++|+.-.+|++|+-+.||.+.|=++...
T Consensus 325 tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r~ 363 (370)
T KOG1007|consen 325 TYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPRF 363 (370)
T ss_pred cccccccceEEEeeccCCCeeEEEeccCceEEeecCChh
Confidence 778899999999999999999999999999999877654
No 46
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.5e-30 Score=229.99 Aligned_cols=246 Identities=27% Similarity=0.453 Sum_probs=209.9
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
+|.++|++++|+|++ .+|++++.+|.|++|++... .....+..|...+..+.|++++. +|++++.+|.|+
T Consensus 7 ~h~~~i~~~~~~~~~-~~l~~~~~~g~i~i~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~ 76 (289)
T cd00200 7 GHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETG--------ELLRTLKGHTGPVRDVAASADGT-YLASGSSDKTIR 76 (289)
T ss_pred ccCCCEEEEEEcCCC-CEEEEeecCcEEEEEEeeCC--------CcEEEEecCCcceeEEEECCCCC-EEEEEcCCCeEE
Confidence 799999999999998 68999999999999999873 24567788999999999999887 999999999999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCc
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEW 272 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 272 (406)
+|++..+.. ...+..|...+.++.|+| ++.++++++.+|.|++||+++++....+..|...+.+++|+|++.
T Consensus 77 i~~~~~~~~------~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~- 148 (289)
T cd00200 77 LWDLETGEC------VRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT- 148 (289)
T ss_pred EEEcCcccc------eEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC-
Confidence 999987532 244557788999999998 477888888899999999998888888888889999999999977
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeE
Q 015484 273 VLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELL 352 (406)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (406)
++++++.++.|++||++.... +..+..|...+.++.|+|+++ .+++++.|+.|++||++. ...+
T Consensus 149 ~l~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~--------------~~~~ 212 (289)
T cd00200 149 FVASSSQDGTIKLWDLRTGKC-VATLTGHTGEVNSVAFSPDGE-KLLSSSSDGTIKLWDLST--------------GKCL 212 (289)
T ss_pred EEEEEcCCCcEEEEEcccccc-ceeEecCccccceEEECCCcC-EEEEecCCCcEEEEECCC--------------Ccee
Confidence 788887799999999987554 777888888999999999997 477888899999999986 2344
Q ss_pred EEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 353 FSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 353 ~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
..+..|...+.++.|+|++. ++++++.||.|++|++.++.
T Consensus 213 ~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~~~~ 252 (289)
T cd00200 213 GTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRTGE 252 (289)
T ss_pred cchhhcCCceEEEEEcCCCc-EEEEEcCCCcEEEEEcCCce
Confidence 44557888999999999976 68888889999999998643
No 47
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-31 Score=214.92 Aligned_cols=266 Identities=14% Similarity=0.226 Sum_probs=216.8
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
+...+|..+++-|.|+.+| .+|.+++.|.++.||--.++ ..+-++.+|++.|+|++.+-+.. .+++|+.|
T Consensus 4 i~l~GHERplTqiKyN~eG-DLlFscaKD~~~~vw~s~nG--------erlGty~GHtGavW~~Did~~s~-~liTGSAD 73 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREG-DLLFSCAKDSTPTVWYSLNG--------ERLGTYDGHTGAVWCCDIDWDSK-HLITGSAD 73 (327)
T ss_pred cccccCccccceEEecCCC-cEEEEecCCCCceEEEecCC--------ceeeeecCCCceEEEEEecCCcc-eeeecccc
Confidence 4456899999999999999 79999999999999987663 44788999999999999998887 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe-----cCCcEEEEECCC-------Ccccccccc
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG-----DDCQLMIWDLRT-------NQTQQRVKA 256 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-----~dg~i~i~d~~~-------~~~~~~~~~ 256 (406)
.++++||+.+++.. ..+. ...+|..+.|++ ++++++.+. ..+.|.++|++. .++...+..
T Consensus 74 ~t~kLWDv~tGk~l------a~~k-~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t 145 (327)
T KOG0643|consen 74 QTAKLWDVETGKQL------ATWK-TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT 145 (327)
T ss_pred ceeEEEEcCCCcEE------EEee-cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC
Confidence 99999999998653 2232 467899999998 566665554 457799999983 444666677
Q ss_pred cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCC
Q 015484 257 HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIG 336 (406)
Q Consensus 257 ~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 336 (406)
+.+.++.+-|.|.++ +|++|..||.|..||++++.+.+.....|...|+.++++|+.. +++|++.|.+-++||..+..
T Consensus 146 ~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~D~~tl~ 223 (327)
T KOG0643|consen 146 PDSKITSALWGPLGE-TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT-YFITGSKDTTAKLVDVRTLE 223 (327)
T ss_pred CccceeeeeecccCC-EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc-eEEecccCccceeeecccee
Confidence 889999999999999 9999999999999999998887888889999999999999996 69999999999999998754
Q ss_pred ccccccccc-------------------------------CCCC----------eeEEEecCCCCCeeeEEeCCCCCcEE
Q 015484 337 DEQLELDAE-------------------------------DGPP----------ELLFSHGGHKAKISDFSWNKNDPWVI 375 (406)
Q Consensus 337 ~~~~~~~~~-------------------------------~~~~----------~~~~~~~~h~~~v~~~~~s~~~~~~l 375 (406)
......... .+.. +-+-...+|-++|++++|+|+|+ ..
T Consensus 224 v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGk-sY 302 (327)
T KOG0643|consen 224 VLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGK-SY 302 (327)
T ss_pred eEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCc-cc
Confidence 322110000 0000 11122468999999999999999 69
Q ss_pred EEEeCCCcEEEEeCCCcccC
Q 015484 376 SSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 376 ~s~~~dg~i~iw~~~~~~~~ 395 (406)
+||++||.|++.-+....+.
T Consensus 303 sSGGEDG~VR~h~Fd~~YF~ 322 (327)
T KOG0643|consen 303 SSGGEDGYVRLHHFDSNYFD 322 (327)
T ss_pred ccCCCCceEEEEEeccchhh
Confidence 99999999999987776553
No 48
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.6e-31 Score=239.50 Aligned_cols=257 Identities=16% Similarity=0.340 Sum_probs=215.7
Q ss_pred CCeEEEEEeecC-CceeEEEEcCCCCcEEEEEeC-CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCe
Q 015484 104 PKVEIAQKIRVD-GEVNRARCMPQKPNLVGTKTS-SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGY 181 (406)
Q Consensus 104 ~~~~~~~~~~h~-~~v~~i~~~p~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 181 (406)
|.+.++..+.-. .+|..++|+..| +.||.|+. -|.+.||+.+... -+...++|...+++++++|+|+ +
T Consensus 295 P~f~lih~LSis~~~I~t~~~N~tG-DWiA~g~~klgQLlVweWqsEs--------YVlKQQgH~~~i~~l~YSpDgq-~ 364 (893)
T KOG0291|consen 295 PDFNLIHSLSISDQKILTVSFNSTG-DWIAFGCSKLGQLLVWEWQSES--------YVLKQQGHSDRITSLAYSPDGQ-L 364 (893)
T ss_pred CCceEEEEeecccceeeEEEecccC-CEEEEcCCccceEEEEEeeccc--------eeeeccccccceeeEEECCCCc-E
Confidence 445555555544 688899999888 57777765 4899999999842 2666789999999999999999 9
Q ss_pred EEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccc-cCCC
Q 015484 182 LVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA-HEKE 260 (406)
Q Consensus 182 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~ 260 (406)
++||+.||.|+|||..++- |+.+|..|.+.|+.++|+. .++.+++.+-||+|+.||+...+..+++.. ....
T Consensus 365 iaTG~eDgKVKvWn~~Sgf------C~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Q 437 (893)
T KOG0291|consen 365 IATGAEDGKVKVWNTQSGF------CFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQ 437 (893)
T ss_pred EEeccCCCcEEEEeccCce------EEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCcee
Confidence 9999999999999998763 5688999999999999997 788899999999999999998888777743 3456
Q ss_pred eeEEEecCCCCcEEEEEeCCC-cEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccc
Q 015484 261 VNYLSFNPYNEWVLATASSDT-TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339 (406)
Q Consensus 261 v~~i~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 339 (406)
..|++..|.|. ++.+|+.|. .|.+|++.+++. +..+.+|.++|.+++|+|.+. +|++++.|.+|++||+-....
T Consensus 438 fscvavD~sGe-lV~AG~~d~F~IfvWS~qTGql-lDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s~~-- 512 (893)
T KOG0291|consen 438 FSCVAVDPSGE-LVCAGAQDSFEIFVWSVQTGQL-LDILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSSSG-- 512 (893)
T ss_pred eeEEEEcCCCC-EEEeeccceEEEEEEEeecCee-eehhcCCCCcceeeEEccccC-eEEeccccceEEEEEeeccCc--
Confidence 78999999999 888888887 799999999776 889999999999999999997 799999999999999976211
Q ss_pred ccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
.+.++ .+...+..++|+|+|+ -++++.-||.|.+||+..+...
T Consensus 513 -----------~vEtl-~i~sdvl~vsfrPdG~-elaVaTldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 513 -----------TVETL-EIRSDVLAVSFRPDGK-ELAVATLDGQITFFDIKEAVQV 555 (893)
T ss_pred -----------eeeeE-eeccceeEEEEcCCCC-eEEEEEecceEEEEEhhhceee
Confidence 12222 2456799999999999 6899999999999999877543
No 49
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.8e-30 Score=225.53 Aligned_cols=268 Identities=16% Similarity=0.261 Sum_probs=219.4
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC-
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH- 187 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~- 187 (406)
...-+|..+++-.+|+|.| .++|+|...|+|+|||..... ......++.-.++|..|+|+.++. +|++.++
T Consensus 53 ~iYtEH~~~vtVAkySPsG-~yiASGD~sG~vRIWdtt~~~------hiLKnef~v~aG~I~Di~Wd~ds~-RI~avGEG 124 (603)
T KOG0318|consen 53 DIYTEHAHQVTVAKYSPSG-FYIASGDVSGKVRIWDTTQKE------HILKNEFQVLAGPIKDISWDFDSK-RIAAVGEG 124 (603)
T ss_pred eeeccccceeEEEEeCCCc-eEEeecCCcCcEEEEeccCcc------eeeeeeeeecccccccceeCCCCc-EEEEEecC
Confidence 3455799999999999998 799999999999999998732 233455667789999999999999 5555544
Q ss_pred ---CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEE
Q 015484 188 ---DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYL 264 (406)
Q Consensus 188 ---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i 264 (406)
-|.+.+||..+. +..+.+|...|+++.|-|..+-.+++|++|+.|.+|+-.--+...++..|..-|+++
T Consensus 125 rerfg~~F~~DSG~S--------vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~V 196 (603)
T KOG0318|consen 125 RERFGHVFLWDSGNS--------VGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCV 196 (603)
T ss_pred ccceeEEEEecCCCc--------cceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeE
Confidence 256777876542 355678999999999999888899999999999999976666667778899999999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec---CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccc
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMRKMTVPLHILS---SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE 341 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 341 (406)
.|+|+|. ++++.+.||.|.+||-.+++. +..+. +|++.|.+++|+|++.+ ++|++.|.+++|||+.........
T Consensus 197 RysPDG~-~Fat~gsDgki~iyDGktge~-vg~l~~~~aHkGsIfalsWsPDs~~-~~T~SaDkt~KIWdVs~~slv~t~ 273 (603)
T KOG0318|consen 197 RYSPDGS-RFATAGSDGKIYIYDGKTGEK-VGELEDSDAHKGSIFALSWSPDSTQ-FLTVSADKTIKIWDVSTNSLVSTW 273 (603)
T ss_pred EECCCCC-eEEEecCCccEEEEcCCCccE-EEEecCCCCccccEEEEEECCCCce-EEEecCCceEEEEEeeccceEEEe
Confidence 9999999 999999999999999998776 66666 89999999999999985 999999999999999875322111
Q ss_pred cc-----------------------------ccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 342 LD-----------------------------AEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 342 ~~-----------------------------~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.- .....+..+..+.||...|+++..+|++. .|.+|+.||.|.-|+..++
T Consensus 274 ~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~-~i~SgsyDG~I~~W~~~~g 352 (603)
T KOG0318|consen 274 PMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK-TIYSGSYDGHINSWDSGSG 352 (603)
T ss_pred ecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCC-EEEeeccCceEEEEecCCc
Confidence 00 00112235666789999999999999998 6899999999999999988
Q ss_pred ccCC
Q 015484 393 IYRD 396 (406)
Q Consensus 393 ~~~~ 396 (406)
...+
T Consensus 353 ~~~~ 356 (603)
T KOG0318|consen 353 TSDR 356 (603)
T ss_pred cccc
Confidence 6543
No 50
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-31 Score=237.64 Aligned_cols=238 Identities=22% Similarity=0.333 Sum_probs=205.1
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEE
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLW 194 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 194 (406)
.-+|++..|-+.. +.+++|+.|..|+||+..+ ...+..+..|.+.|.+++.+|..+ +++|+|.|-+|++|
T Consensus 55 ~~PvRa~kfiaRk-nWiv~GsDD~~IrVfnynt--------~ekV~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW 124 (794)
T KOG0276|consen 55 EVPVRAAKFIARK-NWIVTGSDDMQIRVFNYNT--------GEKVKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLW 124 (794)
T ss_pred ccchhhheeeecc-ceEEEecCCceEEEEeccc--------ceeeEEeeccccceeeeeecCCCC-eEEecCCccEEEEe
Confidence 4678889998876 7999999999999999998 445889999999999999999998 99999999999999
Q ss_pred eCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCC-CcE
Q 015484 195 DVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN-EWV 273 (406)
Q Consensus 195 d~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~ 273 (406)
|.+.. +.+.+++.+|..-|.+++|+|.+.+.|++++-|++|++|.+.+..+..++.+|...|+|+.+-+-| +-+
T Consensus 125 ~we~~-----wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpy 199 (794)
T KOG0276|consen 125 DWENE-----WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPY 199 (794)
T ss_pred eccCc-----eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcce
Confidence 98864 556789999999999999999999999999999999999999999999999999999999997754 238
Q ss_pred EEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEE
Q 015484 274 LATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLF 353 (406)
Q Consensus 274 l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 353 (406)
|++|+.|.+|+|||..+..+ ++++.+|...|..+.|+|.-+ ++++|++||+++||+-.+... ..
T Consensus 200 lIsgaDD~tiKvWDyQtk~C-V~TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty~l--------------E~ 263 (794)
T KOG0276|consen 200 LISGADDLTIKVWDYQTKSC-VQTLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSKTYKL--------------EK 263 (794)
T ss_pred EEecCCCceEEEeecchHHH-HHHhhcccccceEEEecCCCc-EEEEecCCccEEEecCcceeh--------------hh
Confidence 99999999999999998665 999999999999999999998 799999999999999876322 22
Q ss_pred EecCCCCCeeeEEeCCCCCcEEEEEeCCCcE
Q 015484 354 SHGGHKAKISDFSWNKNDPWVISSVADDNTV 384 (406)
Q Consensus 354 ~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i 384 (406)
.+.-....|++++-.+.+. .++.|...|.|
T Consensus 264 tLn~gleRvW~I~~~k~~~-~i~vG~Deg~i 293 (794)
T KOG0276|consen 264 TLNYGLERVWCIAAHKGDG-KIAVGFDEGSV 293 (794)
T ss_pred hhhcCCceEEEEeecCCCC-eEEEeccCCcE
Confidence 2233345677777777666 46666555543
No 51
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=3.9e-30 Score=239.23 Aligned_cols=261 Identities=15% Similarity=0.285 Sum_probs=191.6
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccc----cCC-CCCceeeeCCCCCeeEEEecC-CCCCeEEEecCCC
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQ----QDD-CDPDLRLKGHDKEGYGLSWSP-FKEGYLVSGSHDN 189 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~----~~~-~~~~~~~~~h~~~v~~l~~~~-~~~~~l~s~~~dg 189 (406)
..|+....++++.+ +++++.+..+..|+........ .+. ......+.+|.+.|.+++|+| ++. +|++|+.||
T Consensus 21 ~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~-~LaSgS~Dg 98 (493)
T PTZ00421 21 LNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ-KLFTASEDG 98 (493)
T ss_pred eccccccccCCCCC-cEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC-EEEEEeCCC
Confidence 44555555666433 4455555555566543321110 000 111234789999999999999 555 999999999
Q ss_pred eEEEEeCCCccCC-ceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 190 KICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 190 ~i~iwd~~~~~~~-~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
+|++||+...... ....++..+.+|...|.+++|+|.+.++|++++.|+.|++||+++++.+..+..|...|.+++|+|
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence 9999999765321 112345677889999999999996678999999999999999999988888888999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCC-eEEEEEcCCCCCEEEEE---eCCCcEEEEeCCCCCcccccccc
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEE-VFQVEWDPNHETVLASS---ADDRRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~-v~~i~~~p~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~ 344 (406)
++. +|++++.|+.|++||++++.. +..+.+|.+. +..+.|.+++..++.+| +.|+.|++||++.....
T Consensus 179 dG~-lLatgs~Dg~IrIwD~rsg~~-v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p------ 250 (493)
T PTZ00421 179 DGS-LLCTTSKDKKLNIIDPRDGTI-VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASP------ 250 (493)
T ss_pred CCC-EEEEecCCCEEEEEECCCCcE-EEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCc------
Confidence 998 999999999999999998664 7778888765 45788999887544443 24899999999863321
Q ss_pred cCCCCeeEEEec-CCCCCeeeEEeCCCCCcEEEEEe-CCCcEEEEeCCCccc
Q 015484 345 EDGPPELLFSHG-GHKAKISDFSWNKNDPWVISSVA-DDNTVQVWQMTDSIY 394 (406)
Q Consensus 345 ~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~~l~s~~-~dg~i~iw~~~~~~~ 394 (406)
+.... .+...+....|++++. +|++++ .|+.|++|++.++..
T Consensus 251 -------~~~~~~d~~~~~~~~~~d~d~~-~L~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 251 -------YSTVDLDQSSALFIPFFDEDTN-LLYIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred -------eeEeccCCCCceEEEEEcCCCC-EEEEEEeCCCeEEEEEeeCCce
Confidence 11112 2234466678999998 466655 699999999988753
No 52
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-31 Score=244.42 Aligned_cols=251 Identities=16% Similarity=0.315 Sum_probs=200.5
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCc----------------------------cc-c---c--------
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQ----------------------------AE-K---Q-------- 152 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~----------------------------~~-~---~-------- 152 (406)
.|.+.|+++.|+++| .+||+|+.||.|+||.+... .. . .
T Consensus 265 ah~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 599999999999999 69999999999999998760 00 0 0
Q ss_pred ------------cCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEE
Q 015484 153 ------------QDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220 (406)
Q Consensus 153 ------------~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~ 220 (406)
.-..+|+..+.||.+.|..|.|+.++ +|++++.|.+|++|++.... ++..| .|..-|+|
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~------CL~~F-~HndfVTc 414 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKE------CLKVF-SHNDFVTC 414 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcc------eeeEE-ecCCeeEE
Confidence 01345677889999999999999743 89999999999999998754 34444 48999999
Q ss_pred EEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec-
Q 015484 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILS- 299 (406)
Q Consensus 221 i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~- 299 (406)
|+|+|.+.++|++|+-||.||||++...+.+.-.. -...|++++|.|+|+ ..++|+.+|.+++|+.+..+. .....
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk-~avIGt~~G~C~fY~t~~lk~-~~~~~I 491 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGK-GAVIGTFNGYCRFYDTEGLKL-VSDFHI 491 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCc-eEEEEEeccEEEEEEccCCeE-EEeeeE
Confidence 99999999999999999999999998776544433 347899999999999 899999999999999987553 11111
Q ss_pred --------CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCC--CeeeEEeCC
Q 015484 300 --------SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKA--KISDFSWNK 369 (406)
Q Consensus 300 --------~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~s~ 369 (406)
.|. .|+++.|.|....-++..+.|..|+|||.+. ..++..+.|+.. .-...+|+.
T Consensus 492 ~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~--------------~~lv~KfKG~~n~~SQ~~Asfs~ 556 (712)
T KOG0283|consen 492 RLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD--------------KDLVHKFKGFRNTSSQISASFSS 556 (712)
T ss_pred eeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccc--------------hhhhhhhcccccCCcceeeeEcc
Confidence 133 7999999987766577788899999999965 234444444332 245678999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCc
Q 015484 370 NDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 370 ~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
+|++ |+++++|..|+||+....
T Consensus 557 Dgk~-IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 557 DGKH-IVSASEDSWVYIWKNDSF 578 (712)
T ss_pred CCCE-EEEeecCceEEEEeCCCC
Confidence 9995 888899999999998544
No 53
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=5.3e-31 Score=216.03 Aligned_cols=275 Identities=20% Similarity=0.277 Sum_probs=215.8
Q ss_pred CCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccc------cc----CCCCCceeeeCCCCCeeEEE
Q 015484 104 PKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEK------QQ----DDCDPDLRLKGHDKEGYGLS 173 (406)
Q Consensus 104 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~------~~----~~~~~~~~~~~h~~~v~~l~ 173 (406)
++.+......|++++.+.+|+|+| .++|+|+.|..|+|.|++....+ .. .....+.++..|..+|+++.
T Consensus 101 ~~yEt~ylt~HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~ 179 (430)
T KOG0640|consen 101 SEYETKYLTSHKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLD 179 (430)
T ss_pred cccceEEEeecccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCccccee
Confidence 456666777899999999999999 79999999999999999832111 10 12244667889999999999
Q ss_pred ecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccc
Q 015484 174 WSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQR 253 (406)
Q Consensus 174 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 253 (406)
|+|... .|++|+.|++|++||+.+....+.++. + ....+|.++.|+| .+.++++|.+-..+++||+.+-++...
T Consensus 180 FHPre~-ILiS~srD~tvKlFDfsK~saKrA~K~---~-qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~Qcfvs 253 (430)
T KOG0640|consen 180 FHPRET-ILISGSRDNTVKLFDFSKTSAKRAFKV---F-QDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVS 253 (430)
T ss_pred ecchhh-eEEeccCCCeEEEEecccHHHHHHHHH---h-hccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeee
Confidence 999887 999999999999999987654433322 2 2356899999999 789999999999999999998776433
Q ss_pred c---cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCC-CeEEEEEcCCCCCEEEEEeCCCcEEE
Q 015484 254 V---KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTE-EVFQVEWDPNHETVLASSADDRRLMV 329 (406)
Q Consensus 254 ~---~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~-~v~~i~~~p~~~~~l~s~~~dg~i~i 329 (406)
- ..|...|+++.+++.++ +.++|+.||.|++||--+..+.-..-.+|.+ .|.+..|..+++ ++++.+.|..+++
T Consensus 254 anPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~k-yiLsSG~DS~vkL 331 (430)
T KOG0640|consen 254 ANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGK-YILSSGKDSTVKL 331 (430)
T ss_pred cCcccccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCe-EEeecCCcceeee
Confidence 3 56889999999999999 9999999999999998876653333345654 699999999998 5889999999999
Q ss_pred EeCCCCCccccccccc-----------------------CCCC------------eeEEEecCCCCCeeeEEeCCCCCcE
Q 015484 330 WDLNRIGDEQLELDAE-----------------------DGPP------------ELLFSHGGHKAKISDFSWNKNDPWV 374 (406)
Q Consensus 330 wd~~~~~~~~~~~~~~-----------------------~~~~------------~~~~~~~~h~~~v~~~~~s~~~~~~ 374 (406)
|.+.+........+.. +... +.-.-..+|++.+..+.-+|.++ .
T Consensus 332 WEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p-~ 410 (430)
T KOG0640|consen 332 WEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEP-A 410 (430)
T ss_pred eeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCC-c
Confidence 9998865433222110 0000 00011237999999999999999 6
Q ss_pred EEEEeCCCcEEEEe
Q 015484 375 ISSVADDNTVQVWQ 388 (406)
Q Consensus 375 l~s~~~dg~i~iw~ 388 (406)
+++|+.|-.+++|-
T Consensus 411 FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 411 FMTCSDDFRARFWY 424 (430)
T ss_pred eeeecccceeeeee
Confidence 89999999999995
No 54
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.6e-30 Score=217.07 Aligned_cols=264 Identities=21% Similarity=0.328 Sum_probs=220.5
Q ss_pred CCCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeE
Q 015484 103 IPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYL 182 (406)
Q Consensus 103 ~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 182 (406)
+++++. ...+|-..|..+++++..+ ++++++.|+.|+-||+.. .+.+..+.+|-+.|+|++.+|.-. .|
T Consensus 182 tg~Lkl-tltGhi~~vr~vavS~rHp-YlFs~gedk~VKCwDLe~--------nkvIR~YhGHlS~V~~L~lhPTld-vl 250 (460)
T KOG0285|consen 182 TGQLKL-TLTGHIETVRGVAVSKRHP-YLFSAGEDKQVKCWDLEY--------NKVIRHYHGHLSGVYCLDLHPTLD-VL 250 (460)
T ss_pred cCeEEE-eecchhheeeeeeecccCc-eEEEecCCCeeEEEechh--------hhhHHHhccccceeEEEeccccce-eE
Confidence 344443 3557999999999999886 788999999999999998 345788999999999999999888 99
Q ss_pred EEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCee
Q 015484 183 VSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVN 262 (406)
Q Consensus 183 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 262 (406)
++|+.|.++++||+++.. .+..+.+|..+|..+.+.|.++. +++|+.|++|++||++.++....+..|...|+
T Consensus 251 ~t~grDst~RvWDiRtr~------~V~~l~GH~~~V~~V~~~~~dpq-vit~S~D~tvrlWDl~agkt~~tlt~hkksvr 323 (460)
T KOG0285|consen 251 VTGGRDSTIRVWDIRTRA------SVHVLSGHTNPVASVMCQPTDPQ-VITGSHDSTVRLWDLRAGKTMITLTHHKKSVR 323 (460)
T ss_pred EecCCcceEEEeeecccc------eEEEecCCCCcceeEEeecCCCc-eEEecCCceEEEeeeccCceeEeeecccceee
Confidence 999999999999999854 34778899999999999996554 56999999999999999999999999999999
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccc
Q 015484 263 YLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLEL 342 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 342 (406)
+++.+|... .+|+++.| .|+-|++..+.. +..+.+|..-|++++.+.++ ++++|++.|.+.+||.+++...+...
T Consensus 324 al~lhP~e~-~fASas~d-nik~w~~p~g~f-~~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~~ 398 (460)
T KOG0285|consen 324 ALCLHPKEN-LFASASPD-NIKQWKLPEGEF-LQNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRGQ 398 (460)
T ss_pred EEecCCchh-hhhccCCc-cceeccCCccch-hhccccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCccccccc
Confidence 999999877 89998887 599999998765 67799999999999999887 69999999999999999866544321
Q ss_pred cccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCC
Q 015484 343 DAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRD 396 (406)
Q Consensus 343 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 396 (406)
.. ..|..+ .....|++.+|...|. .|++|..|.+|++|.-.+..-++
T Consensus 399 t~-vqpGSl-----~sEagI~as~fDktg~-rlit~eadKtIk~~keDe~aT~E 445 (460)
T KOG0285|consen 399 TI-VQPGSL-----ESEAGIFASCFDKTGS-RLITGEADKTIKMYKEDEHATEE 445 (460)
T ss_pred cc-ccCCcc-----ccccceeEEeecccCc-eEEeccCCcceEEEecccccCcc
Confidence 10 111111 1245699999999998 68999999999999876665443
No 55
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.98 E-value=1.1e-30 Score=219.60 Aligned_cols=255 Identities=22% Similarity=0.329 Sum_probs=211.1
Q ss_pred EEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCC--CeEEEe
Q 015484 108 IAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKE--GYLVSG 185 (406)
Q Consensus 108 ~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~--~~l~s~ 185 (406)
....+.|..-|.++.-.+ ..+++|+.||.++||+... +....+.+|.++|.+++|...+. ..|+++
T Consensus 98 pl~~~~hdDWVSsv~~~~---~~IltgsYDg~~riWd~~G---------k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsa 165 (423)
T KOG0313|consen 98 PLQCFLHDDWVSSVKGAS---KWILTGSYDGTSRIWDLKG---------KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSA 165 (423)
T ss_pred ccccccchhhhhhhcccC---ceEEEeecCCeeEEEecCC---------ceEEEEecCCcceeeeEEEecCCccceEEEe
Confidence 345667888888888773 5799999999999999986 44778899999999999865443 259999
Q ss_pred cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECC-------------------
Q 015484 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR------------------- 246 (406)
Q Consensus 186 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~------------------- 246 (406)
+.|.++++|..+.+... ........+|...|.++...+ ++..|++|+.|..|.+|+..
T Consensus 166 s~Dqtl~Lw~~~~~~~~--~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~ 242 (423)
T KOG0313|consen 166 SMDQTLRLWKWNVGENK--VKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQK 242 (423)
T ss_pred cCCceEEEEEecCchhh--hhHHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhh
Confidence 99999999999876532 233444559999999999998 78899999999999999932
Q ss_pred ------CCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEE
Q 015484 247 ------TNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLAS 320 (406)
Q Consensus 247 ------~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s 320 (406)
++.++..+.+|..+|.++.|++.+ .+.+++.|.+|+.||+..+.. +..+.. ...++++..+|... +|++
T Consensus 243 ~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~--v~yS~SwDHTIk~WDletg~~-~~~~~~-~ksl~~i~~~~~~~-Ll~~ 317 (423)
T KOG0313|consen 243 REKEGGTRTPLVTLEGHTEPVSSVVWSDAT--VIYSVSWDHTIKVWDLETGGL-KSTLTT-NKSLNCISYSPLSK-LLAS 317 (423)
T ss_pred hhhcccccCceEEecccccceeeEEEcCCC--ceEeecccceEEEEEeecccc-eeeeec-CcceeEeecccccc-eeee
Confidence 112234568899999999999843 799999999999999998776 444443 57899999999886 8999
Q ss_pred EeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 321 SADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 321 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
|+.|..+++||.+.... ....+.+.+|.+.|.++.|+|...++|++|+.||++++||+.+..
T Consensus 318 gssdr~irl~DPR~~~g-----------s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 318 GSSDRHIRLWDPRTGDG-----------SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred cCCCCceeecCCCCCCC-----------ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 99999999999998432 356678889999999999999999999999999999999998754
No 56
>PTZ00420 coronin; Provisional
Probab=99.98 E-value=2.4e-29 Score=235.01 Aligned_cols=237 Identities=17% Similarity=0.272 Sum_probs=181.2
Q ss_pred EeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCC-c-eeeeeeee
Q 015484 134 KTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQD-K-VIDAMHVY 211 (406)
Q Consensus 134 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~-~~~~~~~~ 211 (406)
|+.++.|++|+... ..+...+.+|.+.|.+++|+|+...+|++|+.||+|++||+.+.... . ...++..+
T Consensus 50 GG~~gvI~L~~~~r--------~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L 121 (568)
T PTZ00420 50 GGLIGAIRLENQMR--------KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL 121 (568)
T ss_pred CCceeEEEeeecCC--------CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEe
Confidence 66788999999876 24577889999999999999974449999999999999999864321 1 11234556
Q ss_pred eccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCC
Q 015484 212 EAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKM 291 (406)
Q Consensus 212 ~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~ 291 (406)
.+|...|.+++|+|.+..++++++.|+.|++||+++++....+. +...|.+++|+|+|. +|++++.|+.|+|||++++
T Consensus 122 ~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg 199 (568)
T PTZ00420 122 KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQ 199 (568)
T ss_pred ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCC
Confidence 78999999999999766677899999999999999988766665 567899999999999 8999999999999999986
Q ss_pred CCCcEEecCCCCCeEEE-----EEcCCCCCEEEEEeCCC----cEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCe
Q 015484 292 TVPLHILSSHTEEVFQV-----EWDPNHETVLASSADDR----RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKI 362 (406)
Q Consensus 292 ~~~~~~~~~h~~~v~~i-----~~~p~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 362 (406)
.. +..+.+|.+.+... .|++++. +|++++.|+ .|+|||++.... +.....+..+.+.+
T Consensus 200 ~~-i~tl~gH~g~~~s~~v~~~~fs~d~~-~IlTtG~d~~~~R~VkLWDlr~~~~-----------pl~~~~ld~~~~~L 266 (568)
T PTZ00420 200 EI-ASSFHIHDGGKNTKNIWIDGLGGDDN-YILSTGFSKNNMREMKLWDLKNTTS-----------ALVTMSIDNASAPL 266 (568)
T ss_pred cE-EEEEecccCCceeEEEEeeeEcCCCC-EEEEEEcCCCCccEEEEEECCCCCC-----------ceEEEEecCCccce
Confidence 55 67888998765443 3457876 477766553 799999986332 12222333344444
Q ss_pred eeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 363 SDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 363 ~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
......+++. ++++|+.|+.|++|++..+.+
T Consensus 267 ~p~~D~~tg~-l~lsGkGD~tIr~~e~~~~~~ 297 (568)
T PTZ00420 267 IPHYDESTGL-IYLIGKGDGNCRYYQHSLGSI 297 (568)
T ss_pred EEeeeCCCCC-EEEEEECCCeEEEEEccCCcE
Confidence 3344444566 788999999999999987743
No 57
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.98 E-value=5.2e-30 Score=208.41 Aligned_cols=317 Identities=18% Similarity=0.348 Sum_probs=238.2
Q ss_pred hhcCCCCCCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEE
Q 015484 31 IVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQ 110 (406)
Q Consensus 31 ~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (406)
++++.-+||.+...|.- ..+...|+.+|+.. ....|.|.|.++... . ..+....
T Consensus 38 iy~Y~ap~~lya~~Ws~---------~~~~~~rla~gS~~-Ee~~Nkvqiv~ld~~-----------s-----~e~~~~a 91 (364)
T KOG0290|consen 38 IYTYNAPWPLYAMNWSV---------RPDKKFRLAVGSFI-EEYNNKVQIVQLDED-----------S-----GELVEDA 91 (364)
T ss_pred EEEecCCCceeeecccc---------CCCcceeEEEeeec-cccCCeeEEEEEccC-----------C-----CceeccC
Confidence 56677899999999953 33455799999986 456789988876611 1 2344444
Q ss_pred EeecCCceeEEEEcCCC----CcEEEEEeCCCeEEEEeCCCccccccC-CCCCceeeeCCCCCeeEEEecCCCCCeEEEe
Q 015484 111 KIRVDGEVNRARCMPQK----PNLVGTKTSSCEVYVFDCAKQAEKQQD-DCDPDLRLKGHDKEGYGLSWSPFKEGYLVSG 185 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 185 (406)
.+.|..+++.+.|.|+. +.+||+++. .+++|.+......... .......-..+..+++++.|+.-..++|.+.
T Consensus 92 ~fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtS 169 (364)
T KOG0290|consen 92 NFDHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTS 169 (364)
T ss_pred CCCCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEee
Confidence 58999999999999975 567887654 4999999853221110 0000111234568999999999888899999
Q ss_pred cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc---cccCCCee
Q 015484 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV---KAHEKEVN 262 (406)
Q Consensus 186 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~ 262 (406)
|-|-+..|||++++... .....+-.|..+|.+|+|...+..+||+++.||++|+||+|..+.-..+ .....+..
T Consensus 170 SiDTTCTiWdie~~~~~---~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLl 246 (364)
T KOG0290|consen 170 SIDTTCTIWDIETGVSG---TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLL 246 (364)
T ss_pred cccCeEEEEEEeecccc---ceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcce
Confidence 99999999999987321 1124556899999999999877899999999999999999987654444 22256788
Q ss_pred EEEecCCCCcEEEEEeCCC-cEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccc
Q 015484 263 YLSFNPYNEWVLATASSDT-TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE 341 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 341 (406)
.++|+++..+++|+-..|+ .|.|.|+|....|+..+..|.+.|+.|+|.|.....|+|++.|..+.|||+.........
T Consensus 247 RLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~ 326 (364)
T KOG0290|consen 247 RLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGE 326 (364)
T ss_pred eeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCC
Confidence 9999999998999887765 799999999999999999999999999999999889999999999999999875441111
Q ss_pred ccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 342 LDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 342 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
.+.+.+. ..+.|..+.|++..+.-++.+. ++.+.|-.
T Consensus 327 ------dPilay~---a~~EVNqi~Ws~~~~Dwiai~~-~kkleiLR 363 (364)
T KOG0290|consen 327 ------DPILAYT---AGGEVNQIQWSSSQPDWIAICF-GKKLEILR 363 (364)
T ss_pred ------Cchhhhh---ccceeeeeeecccCCCEEEEEe-cCeeeEEe
Confidence 1222322 3457999999976553355544 56666543
No 58
>PTZ00421 coronin; Provisional
Probab=99.98 E-value=3.2e-29 Score=233.19 Aligned_cols=255 Identities=18% Similarity=0.278 Sum_probs=191.7
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
..+|.+.|++++|+|.+..+||+|+.||+|+||++....... ....+...+.+|...|.+++|+|.+.++|++|+.|++
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~-~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ-NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc-ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 458999999999999443789999999999999997642211 1124567889999999999999987559999999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCC-eeEEEecCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKE-VNYLSFNPY 269 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~i~~~~~ 269 (406)
|++||+.++. ....+..|...|.+++|+| ++.+|++++.|+.|++||+++++.+..+.+|... +..+.|.++
T Consensus 150 VrIWDl~tg~------~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~ 222 (493)
T PTZ00421 150 VNVWDVERGK------AVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKR 222 (493)
T ss_pred EEEEECCCCe------EEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCC
Confidence 9999998763 2355667899999999999 7889999999999999999999988888777654 456789988
Q ss_pred CCcEEEEEe----CCCcEEEEeCCCCCCCcEEecCCC-CCeEEEEEcCCCCCEEEEEe-CCCcEEEEeCCCCCccccccc
Q 015484 270 NEWVLATAS----SDTTVALFDMRKMTVPLHILSSHT-EEVFQVEWDPNHETVLASSA-DDRRLMVWDLNRIGDEQLELD 343 (406)
Q Consensus 270 ~~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~h~-~~v~~i~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~ 343 (406)
+. .+++++ .|+.|++||+++...++.....+. ..+....|++++. +|++++ .|+.|++||+....
T Consensus 223 ~~-~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~-~L~lggkgDg~Iriwdl~~~~------- 293 (493)
T PTZ00421 223 KD-LIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTN-LLYIGSKGEGNIRCFELMNER------- 293 (493)
T ss_pred CC-eEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCC-EEEEEEeCCCeEEEEEeeCCc-------
Confidence 77 455443 478999999998777666655443 4566677899987 566665 69999999998622
Q ss_pred ccCCCCeeEEEe-cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 344 AEDGPPELLFSH-GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 344 ~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
+++.. ..+..++..++|.|... +-...--..++|.+...
T Consensus 294 -------~~~~~~~~s~~~~~g~~~~pk~~---~dv~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 294 -------LTFCSSYSSVEPHKGLCMMPKWS---LDTRKCEIARFYALTYH 333 (493)
T ss_pred -------eEEEeeccCCCCCcceEeccccc---ccccceeeeEEEEecCC
Confidence 22221 23455677888888632 11122234466665544
No 59
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=1.5e-31 Score=223.41 Aligned_cols=254 Identities=17% Similarity=0.330 Sum_probs=207.5
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
..-+|...|.|++=+|.....+|+|+.||.|+|||+.. ..+..++..|.+.|.+|++.. . .+++++.|.
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq--------R~~~~~f~AH~G~V~Gi~v~~--~-~~~tvgdDK 129 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ--------RECIRTFKAHEGLVRGICVTQ--T-SFFTVGDDK 129 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhh--------hhhhheeecccCceeeEEecc--c-ceEEecCCc
Confidence 34689999999999998767899999999999999987 344788999999999999986 3 788999999
Q ss_pred eEEEEeCCCccC------------------------Cc---e-----eeeeeeeeccCccEEEEEeeCCCCCEEEEEecC
Q 015484 190 KICLWDVSALAQ------------------------DK---V-----IDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD 237 (406)
Q Consensus 190 ~i~iwd~~~~~~------------------------~~---~-----~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d 237 (406)
+|+.|-++.... .. . ..++..+.-....|.++.|+|....+|++++.|
T Consensus 130 tvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD 209 (433)
T KOG0268|consen 130 TVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD 209 (433)
T ss_pred ceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccC
Confidence 999998543100 00 0 012333343446688999999889999999999
Q ss_pred CcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCE
Q 015484 238 CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETV 317 (406)
Q Consensus 238 g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~ 317 (406)
+.|.+||+|+..+++.+. ....-+.|+|+| ..+.+++|+.|..++.||+|....|+....+|.+.|.++.|+|.|+.
T Consensus 210 rsIvLyD~R~~~Pl~KVi-~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~E- 286 (433)
T KOG0268|consen 210 RSIVLYDLRQASPLKKVI-LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQE- 286 (433)
T ss_pred CceEEEecccCCccceee-eeccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcch-
Confidence 999999999999887764 344567899999 45589999999999999999999999999999999999999999985
Q ss_pred EEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 318 LASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 318 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
+++||.|.+|+||..+..... . ++ +..-...|.++.||.|.+ +++||+.|+.|++|...-
T Consensus 287 fvsgsyDksIRIf~~~~~~SR-----------d-iY-htkRMq~V~~Vk~S~Dsk-yi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 287 FVSGSYDKSIRIFPVNHGHSR-----------D-IY-HTKRMQHVFCVKYSMDSK-YIISGSDDGNVRLWKAKA 346 (433)
T ss_pred hccccccceEEEeecCCCcch-----------h-hh-hHhhhheeeEEEEecccc-EEEecCCCcceeeeecch
Confidence 999999999999999863321 1 11 111234699999999999 589999999999998754
No 60
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=9.1e-31 Score=226.81 Aligned_cols=246 Identities=22% Similarity=0.306 Sum_probs=208.5
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
-...|.+++|+|..|+-+|+.+.- .+.||+... ..+...+......|+++.|..+|+ +|++|+..|.|++
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~-rvqly~~~~--------~~~~k~~srFk~~v~s~~fR~DG~-LlaaGD~sG~V~v 94 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSV-RVQLYSSVT--------RSVRKTFSRFKDVVYSVDFRSDGR-LLAAGDESGHVKV 94 (487)
T ss_pred ccCcceeEecCCCCCCceEEeccc-EEEEEecch--------hhhhhhHHhhccceeEEEeecCCe-EEEccCCcCcEEE
Confidence 347899999999888777776644 499999887 334555666778999999999999 9999999999999
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcE
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWV 273 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 273 (406)
||+.+.. .+..+.+|..++..+.|+|+++..|++|++|+.+++||+.+......+.+|+..|.|.+|+|....+
T Consensus 95 fD~k~r~------iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hi 168 (487)
T KOG0310|consen 95 FDMKSRV------ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHI 168 (487)
T ss_pred eccccHH------HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeE
Confidence 9965521 2466788999999999999999999999999999999999888755789999999999999998889
Q ss_pred EEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEE
Q 015484 274 LATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLF 353 (406)
Q Consensus 274 l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 353 (406)
+++|+.||.|++||.|....++..+ .|..+|..+.+-|.|. ++++++ ...|+|||+..++ +++.
T Consensus 169 vvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs-~iasAg-Gn~vkVWDl~~G~-------------qll~ 232 (487)
T KOG0310|consen 169 VVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGS-LIASAG-GNSVKVWDLTTGG-------------QLLT 232 (487)
T ss_pred EEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCC-EEEEcC-CCeEEEEEecCCc-------------eehh
Confidence 9999999999999999876545555 5899999999999986 577776 5689999998643 4444
Q ss_pred EecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 354 SHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 354 ~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
....|...|+|+++..++. .|+|++-|+.|++|++.+-
T Consensus 233 ~~~~H~KtVTcL~l~s~~~-rLlS~sLD~~VKVfd~t~~ 270 (487)
T KOG0310|consen 233 SMFNHNKTVTCLRLASDST-RLLSGSLDRHVKVFDTTNY 270 (487)
T ss_pred hhhcccceEEEEEeecCCc-eEeecccccceEEEEccce
Confidence 5556999999999999988 6899999999999996653
No 61
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.2e-30 Score=229.74 Aligned_cols=253 Identities=21% Similarity=0.375 Sum_probs=215.1
Q ss_pred CCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC-CCCCeeEEEecCCCCCeE
Q 015484 104 PKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG-HDKEGYGLSWSPFKEGYL 182 (406)
Q Consensus 104 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l 182 (406)
+++.....++ ...|+++.|+++| .+||+|..+|.|.|||.... +....+.+ |...|-+++|+ +. .+
T Consensus 207 ~~v~~l~~~~-~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~~--------k~~~~~~~~h~~rvg~laW~--~~-~l 273 (484)
T KOG0305|consen 207 GSVTELCSFG-EELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKEQ--------KKTRTLRGSHASRVGSLAWN--SS-VL 273 (484)
T ss_pred CceEEeEecC-CCceEEEEECCCC-CEEEEeecCCeEEEEehhhc--------cccccccCCcCceeEEEecc--Cc-eE
Confidence 4444444444 8999999999999 68999999999999999873 33556666 99999999998 34 89
Q ss_pred EEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCee
Q 015484 183 VSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVN 262 (406)
Q Consensus 183 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 262 (406)
.+|+.||.|..+|++..+... ..+.+|...|..++|++ ++.++|+|+.|+.+.|||.....+...+..|...|.
T Consensus 274 ssGsr~~~I~~~dvR~~~~~~-----~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVK 347 (484)
T KOG0305|consen 274 SSGSRDGKILNHDVRISQHVV-----STLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVK 347 (484)
T ss_pred EEecCCCcEEEEEEecchhhh-----hhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCccccEEEeccceeee
Confidence 999999999999999865421 23678999999999998 799999999999999999988888999999999999
Q ss_pred EEEecCCCCcEEEEEe--CCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEE-eCCCcEEEEeCCCCCccc
Q 015484 263 YLSFNPYNEWVLATAS--SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASS-ADDRRLMVWDLNRIGDEQ 339 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~-~~dg~i~iwd~~~~~~~~ 339 (406)
.++|+|....+||+|+ .|+.|++||..++.. +..+. -.+.|..+.|++..+.++.+- ..++.|.||++.+
T Consensus 348 A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~-i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps----- 420 (484)
T KOG0305|consen 348 ALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR-IDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS----- 420 (484)
T ss_pred EeeeCCCccCceEEcCCCcccEEEEEEcCCCcE-ecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc-----
Confidence 9999999888999987 488999999998665 44443 357899999999987655543 3578999999987
Q ss_pred ccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
...+..+.+|...|..++++|+|. .+++|+.|.++++|++-+.
T Consensus 421 ---------~~~~~~l~gH~~RVl~la~SPdg~-~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 421 ---------MKLVAELLGHTSRVLYLALSPDGE-TIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ---------cceeeeecCCcceeEEEEECCCCC-EEEEecccCcEEeccccCC
Confidence 467778899999999999999999 6999999999999998774
No 62
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.2e-29 Score=204.34 Aligned_cols=215 Identities=24% Similarity=0.463 Sum_probs=185.4
Q ss_pred ceeeeCCCCCeeEEEecCC-CCCeEEEecCCCeEEEEeCCCccCCceeeeeeee-eccCccEEEEEeeCCCCCEEEEEec
Q 015484 159 DLRLKGHDKEGYGLSWSPF-KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVY-EAHESVVEDVSWHLKNENLFGSAGD 236 (406)
Q Consensus 159 ~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~p~~~~~l~~~~~ 236 (406)
...+++|.+.+..++|+|- |. .|++|+.|..|++|+...+ ..+.+...+ .+|+..|++++|+| .+++|++++.
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~---~s~~ck~vld~~hkrsVRsvAwsp-~g~~La~aSF 81 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSG---DSWTCKTVLDDGHKRSVRSVAWSP-HGRYLASASF 81 (312)
T ss_pred EEeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCC---CcEEEEEeccccchheeeeeeecC-CCcEEEEeec
Confidence 5678899999999999997 55 8999999999999998863 223333333 36899999999999 6889999999
Q ss_pred CCcEEEEECCCC--cccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC--CCcEEecCCCCCeEEEEEcC
Q 015484 237 DCQLMIWDLRTN--QTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT--VPLHILSSHTEEVFQVEWDP 312 (406)
Q Consensus 237 dg~i~i~d~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~h~~~v~~i~~~p 312 (406)
|.++.||.-..+ +++..+.+|...|.+++|+++|. +||+++.|..|-||...... ..+..++.|...|..+.|+|
T Consensus 82 D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP 160 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP 160 (312)
T ss_pred cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC
Confidence 999999986654 45788899999999999999999 99999999999999988443 34678899999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 313 NHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 313 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
... +|++++.|.+|++|+-.. +....++.++.+|...|.+++|++.|. .|++++.|+.++||..-..
T Consensus 161 t~d-lL~S~SYDnTIk~~~~~~-----------dddW~c~~tl~g~~~TVW~~~F~~~G~-rl~s~sdD~tv~Iw~~~~~ 227 (312)
T KOG0645|consen 161 TED-LLFSCSYDNTIKVYRDED-----------DDDWECVQTLDGHENTVWSLAFDNIGS-RLVSCSDDGTVSIWRLYTD 227 (312)
T ss_pred Ccc-eeEEeccCCeEEEEeecC-----------CCCeeEEEEecCccceEEEEEecCCCc-eEEEecCCcceEeeeeccC
Confidence 986 899999999999998763 123588999999999999999999998 6999999999999995543
No 63
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.4e-30 Score=236.27 Aligned_cols=247 Identities=19% Similarity=0.341 Sum_probs=211.0
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
+.-+|.|+|+.+.|+|.++ ++++|+.|-+|+||+... .+++.++.+|-+.|..+.|++.-+ .|+++|.|.
T Consensus 46 rFdeHdGpVRgv~FH~~qp-lFVSGGDDykIkVWnYk~--------rrclftL~GHlDYVRt~~FHheyP-WIlSASDDQ 115 (1202)
T KOG0292|consen 46 RFDEHDGPVRGVDFHPTQP-LFVSGGDDYKIKVWNYKT--------RRCLFTLLGHLDYVRTVFFHHEYP-WILSASDDQ 115 (1202)
T ss_pred hhhccCCccceeeecCCCC-eEEecCCccEEEEEeccc--------ceehhhhccccceeEEeeccCCCc-eEEEccCCC
Confidence 3457999999999999995 899999999999999988 456889999999999999999888 999999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc-------------------
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT------------------- 250 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~------------------- 250 (406)
+|+||+..+.+ ++..+.+|..-|.|.+|+| ...++++++-|.+||+||+...+.
T Consensus 116 TIrIWNwqsr~------~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~ 188 (1202)
T KOG0292|consen 116 TIRIWNWQSRK------CIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNS 188 (1202)
T ss_pred eEEEEeccCCc------eEEEEecCceEEEeeccCC-ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccch
Confidence 99999998864 4577889999999999999 688999999999999999852110
Q ss_pred ----------cccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC-CCcEEecCCCCCeEEEEEcCCCCCEEE
Q 015484 251 ----------QQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT-VPLHILSSHTEEVFQVEWDPNHETVLA 319 (406)
Q Consensus 251 ----------~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~h~~~v~~i~~~p~~~~~l~ 319 (406)
...+.+|...|+-++|+|.-+ ++++|+.|..|++|.+...+ -.+.+..+|.+.|.++.|+|..+ +++
T Consensus 189 dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~-lIl 266 (1202)
T KOG0292|consen 189 DLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD-LIL 266 (1202)
T ss_pred hhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccc-eeE
Confidence 123378999999999999999 99999999999999987543 23667889999999999999986 799
Q ss_pred EEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 320 SSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 320 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
+.|+|++|+|||+.. ...+.++....+.-+.++-+|..+ ++++ +.|+-+.+|.++.
T Consensus 267 SnsEDksirVwDm~k--------------Rt~v~tfrrendRFW~laahP~lN-LfAA-gHDsGm~VFkleR 322 (1202)
T KOG0292|consen 267 SNSEDKSIRVWDMTK--------------RTSVQTFRRENDRFWILAAHPELN-LFAA-GHDSGMIVFKLER 322 (1202)
T ss_pred ecCCCccEEEEeccc--------------ccceeeeeccCCeEEEEEecCCcc-eeee-ecCCceEEEEEcc
Confidence 999999999999987 345556655567788999999988 5555 5677788888774
No 64
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.1e-29 Score=217.57 Aligned_cols=270 Identities=18% Similarity=0.297 Sum_probs=215.2
Q ss_pred eEEEEEeecCCceeEEEEcCC------CCcEEEEEeCCCeEEEEeCCCcccccc-------------CCCCCceeeeCCC
Q 015484 106 VEIAQKIRVDGEVNRARCMPQ------KPNLVGTKTSSCEVYVFDCAKQAEKQQ-------------DDCDPDLRLKGHD 166 (406)
Q Consensus 106 ~~~~~~~~h~~~v~~i~~~p~------~~~~l~~~~~dg~i~iw~~~~~~~~~~-------------~~~~~~~~~~~h~ 166 (406)
+-+..-+--+....|+.|... .++++|.|+.+..|.|||+.-...... ...+....-.+|+
T Consensus 164 lYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHT 243 (463)
T KOG0270|consen 164 LYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHT 243 (463)
T ss_pred eeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccch
Confidence 333444444566677777642 237999999999999999875322110 0011112234799
Q ss_pred CCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECC
Q 015484 167 KEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR 246 (406)
Q Consensus 167 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~ 246 (406)
..|.+++|+..-++.||+||.|.+|++||+.+++.. ..+..|...|.++.|+|..+.++++|+.|+++.+.|.|
T Consensus 244 davl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~------~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R 317 (463)
T KOG0270|consen 244 DAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPK------SSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCR 317 (463)
T ss_pred HHHHHHHhccccceeEEecCCCceEEEEEcCCCCcc------eehhhcCCceeEEEecCCCceEEEeccccceEEeeecc
Confidence 999999999988889999999999999999998754 44556899999999999999999999999999999999
Q ss_pred CCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCc
Q 015484 247 TNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRR 326 (406)
Q Consensus 247 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~ 326 (406)
........-...+.|-.++|+|...+.+++++.||+++-+|+|+...++.++++|.++|.++++++..+.+++|++.|+.
T Consensus 318 ~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~ 397 (463)
T KOG0270|consen 318 DPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV 397 (463)
T ss_pred CccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce
Confidence 64433333335678999999999998999999999999999999989999999999999999999999999999999999
Q ss_pred EEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 327 LMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 327 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
|++|++.... +..+..+.-..+...|+++.|+-.++++.||..+.++|||+.+..
T Consensus 398 Vklw~~~~~~------------~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 398 VKLWKFDVDS------------PKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred EEEEeecCCC------------CcccccccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 9999997622 222322222234477889999998899999999999999998764
No 65
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.3e-31 Score=238.90 Aligned_cols=251 Identities=24% Similarity=0.403 Sum_probs=209.4
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
..+..++|.....++|||++..|.|.+||+..... .+....+..|...++++.|++...++|++||.||+|++||
T Consensus 88 ~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r-----nk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~D 162 (839)
T KOG0269|consen 88 YSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR-----NKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWD 162 (839)
T ss_pred eehhhcccccchhhhheeecCCCcEEEEecCcccc-----chhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEe
Confidence 45777889876668999999999999999987321 2335578899999999999999998999999999999999
Q ss_pred CCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc-cccccccCCCeeEEEecCCCCcEE
Q 015484 196 VSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT-QQRVKAHEKEVNYLSFNPYNEWVL 274 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~l 274 (406)
++..+.. .++.+....|.+++|+|..+..|+++.+.|.+.+||+|.... ...+.+|.++|.|+.|+|++. +|
T Consensus 163 lR~~~S~------~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~-~l 235 (839)
T KOG0269|consen 163 LRSKKSK------STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE-WL 235 (839)
T ss_pred eeccccc------ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCc-ee
Confidence 9886543 445567789999999999999999999999999999998654 677789999999999999777 99
Q ss_pred EEEeCCCcEEEEeCCCCCC-CcEEecCCCCCeEEEEEcCCCCCEEEEEeC--CCcEEEEeCCCCCcccccccccCCCCee
Q 015484 275 ATASSDTTVALFDMRKMTV-PLHILSSHTEEVFQVEWDPNHETVLASSAD--DRRLMVWDLNRIGDEQLELDAEDGPPEL 351 (406)
Q Consensus 275 ~~~~~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 351 (406)
|+|+.|+.|+|||+..... ++.++. ...+|.++.|-|..++.|++++. |-.|+|||++. |..+
T Consensus 236 ATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR-------------PYIP 301 (839)
T KOG0269|consen 236 ATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR-------------PYIP 301 (839)
T ss_pred eecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecc-------------cccc
Confidence 9999999999999986443 333332 35789999999999998998874 88899999997 4455
Q ss_pred EEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 352 LFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 352 ~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
..++..|...++.++|.....-++.+++.||.|..-.+.+.
T Consensus 302 ~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 302 YATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 66778899999999998765558999999998765554443
No 66
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.6e-28 Score=191.86 Aligned_cols=271 Identities=20% Similarity=0.314 Sum_probs=208.4
Q ss_pred CCCCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccc---cC-CCCCc---eeeeCCCCCeeEEEe
Q 015484 102 VIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQ---QD-DCDPD---LRLKGHDKEGYGLSW 174 (406)
Q Consensus 102 ~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~-~~~~~---~~~~~h~~~v~~l~~ 174 (406)
..+.|..+..+.-+..|.+++|+|.| .+.|+|+...+.+|.......... +. ...|. ..-+.|.+.|+|.+|
T Consensus 19 ~k~~f~~i~~l~dsqairav~fhp~g-~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~w 97 (350)
T KOG0641|consen 19 EKKHFEAINILEDSQAIRAVAFHPAG-GLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAW 97 (350)
T ss_pred cccceEEEEEecchhheeeEEecCCC-ceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEe
Confidence 45778889999999999999999999 689999999999998665432210 01 11222 233568899999999
Q ss_pred cCCCCCeEEEecCCCeEEEEeCCCccCCcee----------------------------------------------eee
Q 015484 175 SPFKEGYLVSGSHDNKICLWDVSALAQDKVI----------------------------------------------DAM 208 (406)
Q Consensus 175 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----------------------------------------------~~~ 208 (406)
+|.|+ +|++|++|.+|++.-++.......- +.+
T Consensus 98 s~~ge-liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~ 176 (350)
T KOG0641|consen 98 SPCGE-LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGF 176 (350)
T ss_pred cCccC-eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcc
Confidence 99999 9999999999999876642211000 112
Q ss_pred eeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccc----c---cCCCeeEEEecCCCCcEEEEEeCCC
Q 015484 209 HVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK----A---HEKEVNYLSFNPYNEWVLATASSDT 281 (406)
Q Consensus 209 ~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~---~~~~v~~i~~~~~~~~~l~~~~~dg 281 (406)
+.+.+|.+-|.++- + -++.+|++|+.|.+|++||++-..++..+. . ..+.|.+++..|.|+ +|++|..|.
T Consensus 177 ~a~sghtghilaly-s-wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr-ll~sg~~ds 253 (350)
T KOG0641|consen 177 HALSGHTGHILALY-S-WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASGHADS 253 (350)
T ss_pred eeecCCcccEEEEE-E-ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc-eeeeccCCC
Confidence 33445555555442 1 146789999999999999999888776662 1 236799999999999 999999999
Q ss_pred cEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCC
Q 015484 282 TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAK 361 (406)
Q Consensus 282 ~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 361 (406)
...+||+|.+. +++.+..|...|.++.|+|... ++++++.|..|++-|+...-. ....+.....|...
T Consensus 254 sc~lydirg~r-~iq~f~phsadir~vrfsp~a~-yllt~syd~~ikltdlqgdla----------~el~~~vv~ehkdk 321 (350)
T KOG0641|consen 254 SCMLYDIRGGR-MIQRFHPHSADIRCVRFSPGAH-YLLTCSYDMKIKLTDLQGDLA----------HELPIMVVAEHKDK 321 (350)
T ss_pred ceEEEEeeCCc-eeeeeCCCccceeEEEeCCCce-EEEEecccceEEEeecccchh----------hcCceEEEEeccCc
Confidence 99999999855 5999999999999999999885 699999999999999875111 01234445678899
Q ss_pred eeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 362 ISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 362 v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
+..+.|+|..- -+++.+.|.++.+|-++
T Consensus 322 ~i~~rwh~~d~-sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 322 AIQCRWHPQDF-SFISSSADKTATLWALN 349 (350)
T ss_pred eEEEEecCccc-eeeeccCcceEEEeccC
Confidence 99999999876 57888999999999765
No 67
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=1e-29 Score=218.72 Aligned_cols=220 Identities=24% Similarity=0.432 Sum_probs=192.5
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
+..+|..+-+.++|++.....|++++.|++|.+||+...... .....+...+.+|...|..++|++....+|++++.|+
T Consensus 172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~-~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~ 250 (422)
T KOG0264|consen 172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE-DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDG 250 (422)
T ss_pred EEEeecccccccccccccceeEeeccCCCcEEEEeccccccC-CccccceEEeecCCcceehhhccccchhhheeecCCC
Confidence 466899888999999988788999999999999999876543 1346677889999999999999998887999999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCc-ccccccccCCCeeEEEecC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ-TQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~i~~~~ 268 (406)
.+.|||+++. . .++.....+|.+.|+|++|+|.+..+||+|+.|++|.+||+|..+ .+.++.+|...|.++.|+|
T Consensus 251 ~L~iwD~R~~-~---~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSP 326 (422)
T KOG0264|consen 251 KLMIWDTRSN-T---SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSP 326 (422)
T ss_pred eEEEEEcCCC-C---CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCC
Confidence 9999999973 2 123355678999999999999999999999999999999999865 4778899999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCC-------------CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTV-------------PLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~-------------~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
+...+||+++.|+.+.|||+..... ++....+|...|..+.|+|..+.+|++.+.|+.+.||++..
T Consensus 327 h~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 327 HNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 9999999999999999999975432 24566789999999999999999999999999999999873
No 68
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3.6e-29 Score=227.19 Aligned_cols=257 Identities=21% Similarity=0.328 Sum_probs=212.6
Q ss_pred EEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec
Q 015484 107 EIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS 186 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 186 (406)
+.++.++- +-+.+..|.|.+ .++++|...|.+.|||+... ..+-+.+.|.+.|++++.+|++. .+++||
T Consensus 405 kciRTi~~-~y~l~~~Fvpgd-~~Iv~G~k~Gel~vfdlaS~--------~l~Eti~AHdgaIWsi~~~pD~~-g~vT~s 473 (888)
T KOG0306|consen 405 KCIRTITC-GYILASKFVPGD-RYIVLGTKNGELQVFDLASA--------SLVETIRAHDGAIWSISLSPDNK-GFVTGS 473 (888)
T ss_pred ceeEEecc-ccEEEEEecCCC-ceEEEeccCCceEEEEeehh--------hhhhhhhccccceeeeeecCCCC-ceEEec
Confidence 33444433 366677777766 56777788888888887763 23555678999999999999999 899999
Q ss_pred CCCeEEEEeCCCccC-----Cceeeee--eeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCC
Q 015484 187 HDNKICLWDVSALAQ-----DKVIDAM--HVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEK 259 (406)
Q Consensus 187 ~dg~i~iwd~~~~~~-----~~~~~~~--~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 259 (406)
.|.+|++||+.-... .+.+... .++ .-...|.|+.++| ++++++++--|.++++|-+.+.+...++.+|.-
T Consensus 474 aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkL 551 (888)
T KOG0306|consen 474 ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKL 551 (888)
T ss_pred CCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeeccccc
Confidence 999999999753211 1111111 111 2356799999999 799999999999999999999999889999999
Q ss_pred CeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccc
Q 015484 260 EVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339 (406)
Q Consensus 260 ~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 339 (406)
||.|+..+|++. +++||+.|..|++|-+.-+.+ -+.+.+|...|.++.|.|.. +++.+++.|+.|+-||-.+
T Consensus 552 PV~smDIS~DSk-livTgSADKnVKiWGLdFGDC-HKS~fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~k----- 623 (888)
T KOG0306|consen 552 PVLSMDISPDSK-LIVTGSADKNVKIWGLDFGDC-HKSFFAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGEK----- 623 (888)
T ss_pred ceeEEeccCCcC-eEEeccCCCceEEeccccchh-hhhhhcccCceeEEEEcccc-eeEEEecCcceEEeechhh-----
Confidence 999999999999 999999999999999987766 67888999999999999976 5799999999999999887
Q ss_pred ccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
...+..+.+|...|++++.+|+|. +++|++.|.+|++|.-.+.++
T Consensus 624 ---------Fe~iq~L~~H~~ev~cLav~~~G~-~vvs~shD~sIRlwE~tde~~ 668 (888)
T KOG0306|consen 624 ---------FEEIQKLDGHHSEVWCLAVSPNGS-FVVSSSHDKSIRLWERTDEIL 668 (888)
T ss_pred ---------hhhheeeccchheeeeeEEcCCCC-eEEeccCCceeEeeeccCcce
Confidence 567778899999999999999999 689999999999999887643
No 69
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=6.4e-30 Score=211.00 Aligned_cols=262 Identities=18% Similarity=0.223 Sum_probs=219.7
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
..+++..+.+-|..|+|++ .+|++|+.||.|.||+..+++.+..-.....-.+.-+..+|.|+.|+.+.. .|++|+.|
T Consensus 207 ~IKFg~KSh~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGsqD 284 (508)
T KOG0275|consen 207 SIKFGQKSHVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE-MLASGSQD 284 (508)
T ss_pred heecccccchhheeeCCCC-ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH-HhhccCcC
Confidence 4467788999999999999 689999999999999998876544333444445666889999999999888 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
|.|++|.+.++.+.+.+. ..|...|+|+.|+. ++..+.+++.|.++++.-+++|++++.+.+|.+.|+...|.+
T Consensus 285 GkIKvWri~tG~ClRrFd-----rAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~ 358 (508)
T KOG0275|consen 285 GKIKVWRIETGQCLRRFD-----RAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD 358 (508)
T ss_pred CcEEEEEEecchHHHHhh-----hhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcC
Confidence 999999999987643321 37999999999998 566677999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC--CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSS--HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED 346 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 346 (406)
+|. .+++++.||+|++|+..+.++ +.+++. ...+|+++..-|.++..++.|...++|.|-++..
T Consensus 359 dG~-~iisaSsDgtvkvW~~KtteC-~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG------------ 424 (508)
T KOG0275|consen 359 DGH-HIISASSDGTVKVWHGKTTEC-LSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG------------ 424 (508)
T ss_pred CCC-eEEEecCCccEEEecCcchhh-hhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc------------
Confidence 999 899999999999999998765 666554 3457999999998877899999999999999875
Q ss_pred CCCeeEEEecC---CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCC
Q 015484 347 GPPELLFSHGG---HKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRD 396 (406)
Q Consensus 347 ~~~~~~~~~~~---h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 396 (406)
+.+.++.. ..+...+...+|.|.| +.+.++|+.++.+.+.+|.++.
T Consensus 425 ---QvVrsfsSGkREgGdFi~~~lSpkGew-iYcigED~vlYCF~~~sG~LE~ 473 (508)
T KOG0275|consen 425 ---QVVRSFSSGKREGGDFINAILSPKGEW-IYCIGEDGVLYCFSVLSGKLER 473 (508)
T ss_pred ---eEEeeeccCCccCCceEEEEecCCCcE-EEEEccCcEEEEEEeecCceee
Confidence 45544432 2334667789999996 7788999999999999998754
No 70
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=2e-30 Score=206.47 Aligned_cols=249 Identities=17% Similarity=0.266 Sum_probs=207.8
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
-...+|.+.|+......+. ...|+++.|-+-+|||.-++.+ ++.+ .|..-|.+++|+.+.. +|++|+.+
T Consensus 53 gtfeghkgavw~~~l~~na-~~aasaaadftakvw~a~tgde--------lhsf-~hkhivk~~af~~ds~-~lltgg~e 121 (334)
T KOG0278|consen 53 GTFEGHKGAVWSATLNKNA-TRAASAAADFTAKVWDAVTGDE--------LHSF-EHKHIVKAVAFSQDSN-YLLTGGQE 121 (334)
T ss_pred EeeeccCcceeeeecCchh-hhhhhhcccchhhhhhhhhhhh--------hhhh-hhhheeeeEEecccch-hhhccchH
Confidence 3456899999999998876 5688999999999999887433 4444 5888999999999887 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
..++|||++..+.. ...+.+|.+.|..+.|.. ..+.|++.+.|+.||+||.+++..++++. ...+|+++..++
T Consensus 122 kllrvfdln~p~Ap-----p~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~ 194 (334)
T KOG0278|consen 122 KLLRVFDLNRPKAP-----PKEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQ 194 (334)
T ss_pred HHhhhhhccCCCCC-----chhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeecc
Confidence 99999999886532 355678999999999997 66777788999999999999999999886 578899999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGP 348 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 348 (406)
+|+ + ++-...+.|.+||..+... ++.+.. ...|.+...+|+.. ++++|+.|+.++.||+.+..+.
T Consensus 195 dG~-i-lTia~gssV~Fwdaksf~~-lKs~k~-P~nV~SASL~P~k~-~fVaGged~~~~kfDy~TgeEi---------- 259 (334)
T KOG0278|consen 195 DGR-I-LTIAYGSSVKFWDAKSFGL-LKSYKM-PCNVESASLHPKKE-FFVAGGEDFKVYKFDYNTGEEI---------- 259 (334)
T ss_pred CCC-E-EEEecCceeEEeccccccc-eeeccC-ccccccccccCCCc-eEEecCcceEEEEEeccCCcee----------
Confidence 998 4 4445567899999998664 555543 56799999999985 7999999999999999984321
Q ss_pred CeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 349 PELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 349 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
-....+|-++|.+++|+|+|. +.++|++||+|+||+...+.-
T Consensus 260 ---~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 260 ---GSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ---eecccCCCCceEEEEECCCCc-eeeccCCCceEEEEEecCCCc
Confidence 112478999999999999999 899999999999999877643
No 71
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.3e-30 Score=202.36 Aligned_cols=257 Identities=21% Similarity=0.331 Sum_probs=205.1
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecC--CCCCeEEEecCCC
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSP--FKEGYLVSGSHDN 189 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~~l~s~~~dg 189 (406)
..|...|..+...--| ..|||++.|++|+||...+.. ...++.+|.+|.++|+.++|.. .|. +|++++.||
T Consensus 8 t~H~D~IHda~lDyyg-krlATcsSD~tVkIf~v~~n~-----~s~ll~~L~Gh~GPVwqv~wahPk~G~-iLAScsYDg 80 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYG-KRLATCSSDGTVKIFEVRNNG-----QSKLLAELTGHSGPVWKVAWAHPKFGT-ILASCSYDG 80 (299)
T ss_pred hhhhhhhhHhhhhhhc-ceeeeecCCccEEEEEEcCCC-----CceeeeEecCCCCCeeEEeecccccCc-EeeEeecCc
Confidence 3588888888777667 579999999999999998853 2466889999999999999975 566 999999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCC-CCEEEEEecCCcEEEEECCCCc---ccccccccCCCeeEEE
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKN-ENLFGSAGDDCQLMIWDLRTNQ---TQQRVKAHEKEVNYLS 265 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~-~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~v~~i~ 265 (406)
.|.||.-..+. .........|...|++|+|.|.+ +-+|++++.||.|.+.+.+... ......+|...|++++
T Consensus 81 kVIiWke~~g~----w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVs 156 (299)
T KOG1332|consen 81 KVIIWKEENGR----WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVS 156 (299)
T ss_pred eEEEEecCCCc----hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceee
Confidence 99999987763 23345567799999999999954 4567889999999999988652 1334478999999999
Q ss_pred ecCC---CC----------cEEEEEeCCCcEEEEeCCCCCCC-cEEecCCCCCeEEEEEcCCC---CCEEEEEeCCCcEE
Q 015484 266 FNPY---NE----------WVLATASSDTTVALFDMRKMTVP-LHILSSHTEEVFQVEWDPNH---ETVLASSADDRRLM 328 (406)
Q Consensus 266 ~~~~---~~----------~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~h~~~v~~i~~~p~~---~~~l~s~~~dg~i~ 328 (406)
|.|- |. ..|++|+.|..|+||+..+..-. -.++.+|...|..++|.|.- +..|+++++||++.
T Consensus 157 wapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~vi 236 (299)
T KOG1332|consen 157 WAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVI 236 (299)
T ss_pred ecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEE
Confidence 9986 31 25999999999999999875422 34488999999999999974 34699999999999
Q ss_pred EEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 329 VWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 329 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
||-.+...++.+ ..++. .....+..++||+.|. +|+.++.|+.|.+|.-+.
T Consensus 237 Iwt~~~e~e~wk--------~tll~---~f~~~~w~vSWS~sGn-~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 237 IWTKDEEYEPWK--------KTLLE---EFPDVVWRVSWSLSGN-ILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EEEecCccCccc--------ccccc---cCCcceEEEEEecccc-EEEEecCCcEEEEEEeCC
Confidence 998874322221 12222 2456799999999999 788888999999998654
No 72
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=1.4e-29 Score=220.66 Aligned_cols=267 Identities=17% Similarity=0.232 Sum_probs=204.2
Q ss_pred CCCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc-----------------------------
Q 015484 103 IPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ----------------------------- 153 (406)
Q Consensus 103 ~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~----------------------------- 153 (406)
.|--..++.-.|+..|.++++.|.| ..|++|+.|-+|++||++.......
T Consensus 155 IP~shEi~l~hgtk~Vsal~~Dp~G-aR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs 233 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAVDPSG-ARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVS 233 (641)
T ss_pred CCccceEeccCCceEEEEeeecCCC-ceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEe
Confidence 3455566666788999999999999 5799999999999999986543220
Q ss_pred --------------------C--CCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeee
Q 015484 154 --------------------D--DCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVY 211 (406)
Q Consensus 154 --------------------~--~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 211 (406)
+ -..-....+||...++|.+|+|..++.++|++.||++++||++..+....+-.-...
T Consensus 234 g~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~ 313 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA 313 (641)
T ss_pred cCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence 0 011123346888999999999998889999999999999999987643222111111
Q ss_pred eccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccc---ccccCC--CeeEEEecCCCCcEEEEEeCCCcEEEE
Q 015484 212 EAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQR---VKAHEK--EVNYLSFNPYNEWVLATASSDTTVALF 286 (406)
Q Consensus 212 ~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~--~v~~i~~~~~~~~~l~~~~~dg~i~vw 286 (406)
.+..-+++.++|+| ++.+||+|+.||+|.+|+.+....-.. -.+|.. .|+||+|+++|+ +|++-+.|+++++|
T Consensus 314 ~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~-~LlSRg~D~tLKvW 391 (641)
T KOG0772|consen 314 GGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN-YLLSRGFDDTLKVW 391 (641)
T ss_pred CCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc-hhhhccCCCceeee
Confidence 23345789999999 678899999999999999865433222 256766 999999999999 99999999999999
Q ss_pred eCCCCCCCcEEecCCC--CCeEEEEEcCCCCCEEEEEeC------CCcEEEEeCCCCCcccccccccCCCCeeEEEecCC
Q 015484 287 DMRKMTVPLHILSSHT--EEVFQVEWDPNHETVLASSAD------DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH 358 (406)
Q Consensus 287 d~~~~~~~~~~~~~h~--~~v~~i~~~p~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h 358 (406)
|+|+.+.++....+-. .+-+.++|+|+.+ +|++|.. .|.+.+||..+ ...++.+.-.
T Consensus 392 DLrq~kkpL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t--------------~d~v~ki~i~ 456 (641)
T KOG0772|consen 392 DLRQFKKPLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMT--------------LDTVYKIDIS 456 (641)
T ss_pred eccccccchhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEEEeccc--------------eeeEEEecCC
Confidence 9999998887665433 3567899999997 7888764 57799999876 3555555555
Q ss_pred CCCeeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 359 KAKISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 359 ~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
...|..+.|+|.-+. |..|+.||.+++|=
T Consensus 457 ~aSvv~~~WhpkLNQ-i~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 457 TASVVRCLWHPKLNQ-IFAGSGDGTAHVYY 485 (641)
T ss_pred CceEEEEeecchhhh-eeeecCCCceEEEE
Confidence 778999999998774 55666789998873
No 73
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.4e-29 Score=218.09 Aligned_cols=242 Identities=19% Similarity=0.233 Sum_probs=207.1
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
.....|.++.|..|| .+||+|...|.|+|||..+. ..+..+.+|+.+|..+.|+|.+...|++|+.|+.++
T Consensus 66 rFk~~v~s~~fR~DG-~LlaaGD~sG~V~vfD~k~r--------~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k 136 (487)
T KOG0310|consen 66 RFKDVVYSVDFRSDG-RLLAAGDESGHVKVFDMKSR--------VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVK 136 (487)
T ss_pred hhccceeEEEeecCC-eEEEccCCcCcEEEeccccH--------HHHHHHhhccCceeEEEecccCCeEEEecCCCceEE
Confidence 456789999999999 69999999999999996552 235678899999999999999887899999999999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC-cccccccccCCCeeEEEecCCCC
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN-QTQQRVKAHEKEVNYLSFNPYNE 271 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~~~~ 271 (406)
+||+.+... ...+.+|...|.|.+|+|.++.++++|+.||.|++||++.. ..+..+. |..+|.++.+-|.|.
T Consensus 137 ~~d~s~a~v------~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs 209 (487)
T KOG0310|consen 137 YWDLSTAYV------QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGS 209 (487)
T ss_pred EEEcCCcEE------EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCC
Confidence 999988531 24667899999999999998999999999999999999987 4455554 899999999999988
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCee
Q 015484 272 WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPEL 351 (406)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 351 (406)
++++++. ..|++||+-++.+.+..+..|...|+|+.+..++. -|++++-|+.|++||+.+ .+.
T Consensus 210 -~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~-rLlS~sLD~~VKVfd~t~--------------~Kv 272 (487)
T KOG0310|consen 210 -LIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDST-RLLSGSLDRHVKVFDTTN--------------YKV 272 (487)
T ss_pred -EEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCc-eEeecccccceEEEEccc--------------eEE
Confidence 8888775 47999999988876777777999999999999886 599999999999999766 455
Q ss_pred EEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 352 LFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 352 ~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
+.... -.++|.+++.+|+++ .++.|..+|.+.+=+.
T Consensus 273 v~s~~-~~~pvLsiavs~dd~-t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 273 VHSWK-YPGPVLSIAVSPDDQ-TVVIGMSNGLVSIRRR 308 (487)
T ss_pred EEeee-cccceeeEEecCCCc-eEEEecccceeeeehh
Confidence 65554 467899999999998 6889999998877643
No 74
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1e-27 Score=224.20 Aligned_cols=240 Identities=13% Similarity=0.227 Sum_probs=178.4
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
....+|.+.|.+++|+|+.+.+||+|+.||+|+||++............+...+.+|...|.+++|+|++..+|++|+.|
T Consensus 68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D 147 (568)
T PTZ00420 68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD 147 (568)
T ss_pred EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCC
Confidence 44558999999999999855799999999999999997632111011234567889999999999999987567899999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEE----
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYL---- 264 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i---- 264 (406)
++|++||++++... ..+. |...|.+++|+| ++.+|++++.|+.|++||+++++.+..+.+|.+.+.+.
T Consensus 148 gtIrIWDl~tg~~~------~~i~-~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~ 219 (568)
T PTZ00420 148 SFVNIWDIENEKRA------FQIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWI 219 (568)
T ss_pred CeEEEEECCCCcEE------EEEe-cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEe
Confidence 99999999886422 2222 457899999999 68899999999999999999999888888888765433
Q ss_pred -EecCCCCcEEEEEeCCC----cEEEEeCCCCCCCcEEecCCC--CCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCc
Q 015484 265 -SFNPYNEWVLATASSDT----TVALFDMRKMTVPLHILSSHT--EEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGD 337 (406)
Q Consensus 265 -~~~~~~~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~h~--~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 337 (406)
.|++++. +|++++.|+ .|+|||+++...++..+..+. +.+.. .|.++...++++|+.|+.|++|++....
T Consensus 220 ~~fs~d~~-~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p-~~D~~tg~l~lsGkGD~tIr~~e~~~~~- 296 (568)
T PTZ00420 220 DGLGGDDN-YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIP-HYDESTGLIYLIGKGDGNCRYYQHSLGS- 296 (568)
T ss_pred eeEcCCCC-EEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEE-eeeCCCCCEEEEEECCCeEEEEEccCCc-
Confidence 3457777 777776664 799999998666676654332 33333 3444433578999999999999997521
Q ss_pred ccccccccCCCCeeEEEecCCCCCeeeEEeCCCC
Q 015484 338 EQLELDAEDGPPELLFSHGGHKAKISDFSWNKND 371 (406)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~ 371 (406)
...+..+ .+..++.+++|.|..
T Consensus 297 -----------~~~l~~~-~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 297 -----------IRKVNEY-KSCSPFRSFGFLPKQ 318 (568)
T ss_pred -----------EEeeccc-ccCCCccceEEcccc
Confidence 1112222 256678889999874
No 75
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3e-27 Score=194.92 Aligned_cols=252 Identities=17% Similarity=0.266 Sum_probs=200.2
Q ss_pred eEEEEEee-cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEE
Q 015484 106 VEIAQKIR-VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVS 184 (406)
Q Consensus 106 ~~~~~~~~-h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 184 (406)
++..+.+. -.+.|+++.|+++| .++++++.|.+++|||..++ +...++..+.-.+..++|..... .++.
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G-~~litss~dDsl~LYd~~~g--------~~~~ti~skkyG~~~~~Fth~~~-~~i~ 73 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDG-LLLITSSEDDSLRLYDSLSG--------KQVKTINSKKYGVDLACFTHHSN-TVIH 73 (311)
T ss_pred cccccccccCCCceeEEEecCCC-CEEEEecCCCeEEEEEcCCC--------ceeeEeecccccccEEEEecCCc-eEEE
Confidence 33444444 36899999999999 57888899999999999984 44677777777888889987666 6666
Q ss_pred ecC--CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCee
Q 015484 185 GSH--DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVN 262 (406)
Q Consensus 185 ~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 262 (406)
++. |.+|+..++.+.+ .++.+.+|...|++|+.+| .+..|++++.|++|++||+|..++...+.....+
T Consensus 74 sStk~d~tIryLsl~dNk------ylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p-- 144 (311)
T KOG1446|consen 74 SSTKEDDTIRYLSLHDNK------YLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP-- 144 (311)
T ss_pred ccCCCCCceEEEEeecCc------eEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCCc--
Confidence 666 8899999998864 3578899999999999999 4588889999999999999988887776544444
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCCCC-CCCcEEecCC---CCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcc
Q 015484 263 YLSFNPYNEWVLATASSDTTVALFDMRKM-TVPLHILSSH---TEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE 338 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~h---~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 338 (406)
.++|+|.|- ++|++.....|++||+|.. +.|..++... ....+.|.|+|+|+. |+.+...+.+.+.|.-.+
T Consensus 145 i~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~-iLlsT~~s~~~~lDAf~G--- 219 (311)
T KOG1446|consen 145 IAAFDPEGL-IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKS-ILLSTNASFIYLLDAFDG--- 219 (311)
T ss_pred ceeECCCCc-EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCE-EEEEeCCCcEEEEEccCC---
Confidence 478999998 8888887779999999986 4566665544 568999999999986 666677889999998762
Q ss_pred cccccccCCCCeeEEEecCCCCC---eeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 339 QLELDAEDGPPELLFSHGGHKAK---ISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~h~~~---v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
.++.++.++... -.+..|+|+++ ++.+|+.||.|++|+++++.
T Consensus 220 -----------~~~~tfs~~~~~~~~~~~a~ftPds~-Fvl~gs~dg~i~vw~~~tg~ 265 (311)
T KOG1446|consen 220 -----------TVKSTFSGYPNAGNLPLSATFTPDSK-FVLSGSDDGTIHVWNLETGK 265 (311)
T ss_pred -----------cEeeeEeeccCCCCcceeEEECCCCc-EEEEecCCCcEEEEEcCCCc
Confidence 344444444322 26789999999 68899999999999998874
No 76
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.5e-27 Score=196.32 Aligned_cols=279 Identities=18% Similarity=0.304 Sum_probs=210.2
Q ss_pred EEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEe-ecCCceeEEEEcCCCCcEEEEEeCCCeE
Q 015484 62 HKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKI-RVDGEVNRARCMPQKPNLVGTKTSSCEV 140 (406)
Q Consensus 62 ~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~i~~~p~~~~~l~~~~~dg~i 140 (406)
.++++||+. .. |+.+.+-++..... ....+.+.....+ .|.+.|++++.+. .++|+|+.|-+|
T Consensus 2 m~iIvGtYE-----~~--i~Gf~l~~~~~~~~------~s~~~~l~~lF~~~aH~~sitavAVs~---~~~aSGssDetI 65 (362)
T KOG0294|consen 2 MEIIVGTYE-----HV--ILGFKLDPEPKGCT------DSVKPTLKPLFAFSAHAGSITALAVSG---PYVASGSSDETI 65 (362)
T ss_pred eeEEEeeee-----eE--EEEEEeccCccccc------cccceeeeccccccccccceeEEEecc---eeEeccCCCCcE
Confidence 478899984 23 33555432221111 1123334333333 5899999999874 589999999999
Q ss_pred EEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCC-CCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEE
Q 015484 141 YVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFK-EGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219 (406)
Q Consensus 141 ~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~ 219 (406)
+|||+... .....+..|.+.|+++.|.+.- .+.|++|+.||.|.+|+... +..+..+++|.+.|+
T Consensus 66 ~IYDm~k~--------~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~------W~~~~slK~H~~~Vt 131 (362)
T KOG0294|consen 66 HIYDMRKR--------KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS------WELLKSLKAHKGQVT 131 (362)
T ss_pred EEEeccch--------hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC------eEEeeeecccccccc
Confidence 99999984 3366778899999999998754 23799999999999999866 355688889999999
Q ss_pred EEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec
Q 015484 220 DVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILS 299 (406)
Q Consensus 220 ~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 299 (406)
.++.+| .+++.++.+.|+.+++||+-.|+.-.... -....+.+.|+|.|. .++.+..+ .|-+|.+.+... ...+.
T Consensus 132 ~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~-L~~~at~v~w~~~Gd-~F~v~~~~-~i~i~q~d~A~v-~~~i~ 206 (362)
T KOG0294|consen 132 DLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLN-LKNKATLVSWSPQGD-HFVVSGRN-KIDIYQLDNASV-FREIE 206 (362)
T ss_pred eeEecC-CCceEEEEcCCceeeeehhhcCccceeec-cCCcceeeEEcCCCC-EEEEEecc-EEEEEecccHhH-hhhhh
Confidence 999999 78999999999999999999887654443 223334599999999 67777765 599998886443 22222
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEe--CCCCCcEEEE
Q 015484 300 SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSW--NKNDPWVISS 377 (406)
Q Consensus 300 ~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--s~~~~~~l~s 377 (406)
....+.++.|-..+ .|++|+.|+.|++||... ..+.+.+.+|...|.++.+ .|.+. +|+|
T Consensus 207 -~~~r~l~~~~l~~~--~L~vG~d~~~i~~~D~ds--------------~~~~~~~~AH~~RVK~i~~~~~~~~~-~lvT 268 (362)
T KOG0294|consen 207 -NPKRILCATFLDGS--ELLVGGDNEWISLKDTDS--------------DTPLTEFLAHENRVKDIASYTNPEHE-YLVT 268 (362)
T ss_pred -ccccceeeeecCCc--eEEEecCCceEEEeccCC--------------CccceeeecchhheeeeEEEecCCce-EEEE
Confidence 23567788887655 488999999999999886 3566778899999999984 44555 7999
Q ss_pred EeCCCcEEEEeCCCcc
Q 015484 378 VADDNTVQVWQMTDSI 393 (406)
Q Consensus 378 ~~~dg~i~iw~~~~~~ 393 (406)
++.||.|+|||+....
T Consensus 269 aSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 269 ASSDGFIKVWDIDMET 284 (362)
T ss_pred eccCceEEEEEccccc
Confidence 9999999999998774
No 77
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=1.4e-28 Score=232.40 Aligned_cols=262 Identities=21% Similarity=0.342 Sum_probs=213.8
Q ss_pred CCceeEEEEcCCCCcEEEEEe--CCCeEEEEeCCCcccccc----CCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 115 DGEVNRARCMPQKPNLVGTKT--SSCEVYVFDCAKQAEKQQ----DDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~--~dg~i~iw~~~~~~~~~~----~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
...|.+|..+|++ ..+|||+ .||.++||+.+.-..... .-.+.+.....|.+.|.|+.|+|+|. +||+|+.|
T Consensus 13 ~~~IfSIdv~pdg-~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~-~lAsGSDD 90 (942)
T KOG0973|consen 13 EKSIFSIDVHPDG-VKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS-YLASGSDD 90 (942)
T ss_pred CeeEEEEEecCCc-eeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC-eEeeccCc
Confidence 3568999999999 5799999 899999999875331111 12345667778999999999999999 99999999
Q ss_pred CeEEEEeCCC------------ccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccc
Q 015484 189 NKICLWDVSA------------LAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA 256 (406)
Q Consensus 189 g~i~iwd~~~------------~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 256 (406)
+.|.+|.... ......+++...+.+|...|.+++|+| ++.++++++.|++|.+|+.++.+.+..+.+
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccceeeeeeec
Confidence 9999999873 112234567788899999999999999 899999999999999999999999999999
Q ss_pred cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC------C------------------------------------
Q 015484 257 HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV------P------------------------------------ 294 (406)
Q Consensus 257 ~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~------~------------------------------------ 294 (406)
|.+.|-.+.|+|-|+ +||+-+.|++|++|+..+... |
T Consensus 170 H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~ 248 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIA 248 (942)
T ss_pred ccccccceEECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeE
Confidence 999999999999999 999999999999999654210 0
Q ss_pred ---------cEEecCCCCCeEEEEEcCC--------C-------CC-EEEEEeCCCcEEEEeCCCCCcccccccccCCCC
Q 015484 295 ---------LHILSSHTEEVFQVEWDPN--------H-------ET-VLASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349 (406)
Q Consensus 295 ---------~~~~~~h~~~v~~i~~~p~--------~-------~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (406)
-..+-+|..++.++.|+|. | .+ ++|+|+.|++|.||..... .
T Consensus 249 IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~-------------R 315 (942)
T KOG0973|consen 249 IIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP-------------R 315 (942)
T ss_pred EEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC-------------C
Confidence 2345689999999999983 1 11 7899999999999998651 1
Q ss_pred eeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 350 ELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 350 ~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.++..+.-....|.+++|+|+|. .|..++.||+|.+..++.+.+
T Consensus 316 Pl~vi~~lf~~SI~DmsWspdG~-~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 316 PLFVIHNLFNKSIVDMSWSPDGF-SLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred chhhhhhhhcCceeeeeEcCCCC-eEEEEecCCeEEEEEcchHHh
Confidence 22222333456799999999998 677889999999999988755
No 78
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=2.6e-28 Score=195.73 Aligned_cols=251 Identities=16% Similarity=0.292 Sum_probs=208.7
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
....+|...|.+++|+.+| ..||+|+.|+++.+|++.... ........+|.+.|-.++|+|..+..|++++.|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g-~~lasgs~dktv~v~n~e~~r------~~~~~~~~gh~~svdql~w~~~~~d~~atas~d 86 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDG-TKLASGSFDKTVSVWNLERDR------FRKELVYRGHTDSVDQLCWDPKHPDLFATASGD 86 (313)
T ss_pred HHhhhhhhcceEEEEcccC-ceeeecccCCceEEEEecchh------hhhhhcccCCCcchhhheeCCCCCcceEEecCC
Confidence 4455789999999999999 579999999999999998852 222455778999999999999888899999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
.+|++||++.++.. .........+ -+.|+| ++.++++++.|..|.+.|.++.+.....+ ..-.++-++|+-
T Consensus 87 k~ir~wd~r~~k~~------~~i~~~~eni-~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~ 157 (313)
T KOG1407|consen 87 KTIRIWDIRSGKCT------ARIETKGENI-NITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNN 157 (313)
T ss_pred ceEEEEEeccCcEE------EEeeccCcce-EEEEcC-CCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecC
Confidence 99999999987542 3333333344 468999 68888899999999999999887766554 455678899996
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGP 348 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 348 (406)
.+. +++.....|.|.|......+ |+..+++|.....||.|+|+|+ ++|+|+.|..+.+||+..
T Consensus 158 ~nd-~Fflt~GlG~v~ILsypsLk-pv~si~AH~snCicI~f~p~Gr-yfA~GsADAlvSLWD~~E-------------- 220 (313)
T KOG1407|consen 158 SND-LFFLTNGLGCVEILSYPSLK-PVQSIKAHPSNCICIEFDPDGR-YFATGSADALVSLWDVDE-------------- 220 (313)
T ss_pred CCC-EEEEecCCceEEEEeccccc-cccccccCCcceEEEEECCCCc-eEeeccccceeeccChhH--------------
Confidence 666 66666667999999988755 5999999999999999999998 599999999999999986
Q ss_pred CeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 349 PELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 349 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
..++..+..+.-+|..++|+.+|+ +||++++|-.|-|=++.+|-
T Consensus 221 LiC~R~isRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~vetGd 264 (313)
T KOG1407|consen 221 LICERCISRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVETGD 264 (313)
T ss_pred hhhheeeccccCceEEEEeccCcc-eeeccCccceEEeEecccCC
Confidence 355666777889999999999999 69999999999888887763
No 79
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2e-29 Score=239.14 Aligned_cols=268 Identities=21% Similarity=0.395 Sum_probs=224.1
Q ss_pred eEEEEEeecCCceeEEEEcCCCCc---EEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeE
Q 015484 106 VEIAQKIRVDGEVNRARCMPQKPN---LVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYL 182 (406)
Q Consensus 106 ~~~~~~~~h~~~v~~i~~~p~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 182 (406)
++.+..+.-....++++|.+.+.. +||.|..||.|.+|+....... .....+.+...|++.|.++.|++...+.|
T Consensus 55 lk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~--~~~~~la~~~~h~G~V~gLDfN~~q~nlL 132 (1049)
T KOG0307|consen 55 LKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIAN--ASEEVLATKSKHTGPVLGLDFNPFQGNLL 132 (1049)
T ss_pred ccccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccC--cchHHHhhhcccCCceeeeeccccCCcee
Confidence 344445555677889999997755 6999999999999998873111 22344667888999999999999988899
Q ss_pred EEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccC--CC
Q 015484 183 VSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHE--KE 260 (406)
Q Consensus 183 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~ 260 (406)
|+|+.||.|.|||+++.+...... -......|.+++|+....++|++++.+|.+.|||+|..+.+..+..+. ..
T Consensus 133 ASGa~~geI~iWDlnn~~tP~~~~----~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~ 208 (1049)
T KOG0307|consen 133 ASGADDGEILIWDLNKPETPFTPG----SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMH 208 (1049)
T ss_pred eccCCCCcEEEeccCCcCCCCCCC----CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccc
Confidence 999999999999999865432221 122467899999998889999999999999999999988877664333 45
Q ss_pred eeEEEecCCCCcEEEEEeCCC---cEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCc
Q 015484 261 VNYLSFNPYNEWVLATASSDT---TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGD 337 (406)
Q Consensus 261 v~~i~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 337 (406)
+..++|+|++...+++++.|. .|.+||+|....|++.+.+|...|.++.|++.+..+|++++.|+.|.+|+.++
T Consensus 209 ~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t--- 285 (1049)
T KOG0307|consen 209 CSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT--- 285 (1049)
T ss_pred eeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC---
Confidence 788999999887788887654 79999999999999999999999999999999988999999999999999987
Q ss_pred ccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 338 EQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
.+.+..+......++++.|+|..+.++++++.||.|.|+.+.+..
T Consensus 286 -----------gEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 286 -----------GEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred -----------ceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 466777777788999999999999889999999999999987764
No 80
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.6e-28 Score=200.93 Aligned_cols=264 Identities=19% Similarity=0.342 Sum_probs=222.6
Q ss_pred CeEEEEEe-ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEE
Q 015484 105 KVEIAQKI-RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLV 183 (406)
Q Consensus 105 ~~~~~~~~-~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 183 (406)
++.+.+.+ +|...|+.++.....+ ++.+++.|.+.+||.++. ..++..+.+|.+.|++|+|++.+. +++
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Es--------g~CL~~Y~GH~GSVNsikfh~s~~-L~l 206 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLES--------GACLATYTGHTGSVNSIKFHNSGL-LLL 206 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeecc--------ccceeeecccccceeeEEeccccc-eEE
Confidence 45555544 6999999999887664 899999999999999998 455888999999999999999988 999
Q ss_pred EecCCCeEEEEe------CCCcc---------------------------C-CceeeeeeeeeccCccEEEEEeeCCCCC
Q 015484 184 SGSHDNKICLWD------VSALA---------------------------Q-DKVIDAMHVYEAHESVVEDVSWHLKNEN 229 (406)
Q Consensus 184 s~~~dg~i~iwd------~~~~~---------------------------~-~~~~~~~~~~~~~~~~i~~i~~~p~~~~ 229 (406)
+++.|++..||. +.... . ...-.++..+.+|.+.|.+..|.. ++.
T Consensus 207 TaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~ 285 (481)
T KOG0300|consen 207 TASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQ 285 (481)
T ss_pred EccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccc
Confidence 999999999997 22100 0 011124566788999999999986 888
Q ss_pred EEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEE
Q 015484 230 LFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVE 309 (406)
Q Consensus 230 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~ 309 (406)
.+++++.|.+..+||+++++.+..+.+|....+.++-+|..+ ++++.+.|.+.++||+|..-..+..|.+|...|+++.
T Consensus 286 Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQr-LVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~v 364 (481)
T KOG0300|consen 286 QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQR-LVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVV 364 (481)
T ss_pred eeeeeeccccceeeeeccCceeccccCcchhccccccCCcce-EEEEeccCceeEeccchhhcceeeeecccccceeEEE
Confidence 999999999999999999999999999999999999999988 9999999999999999976667889999999999999
Q ss_pred EcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 310 WDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 310 ~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
|..+.+ +++|+.|.+|+|||++++.. .+.++. -.++++.++.+..++ +|+.--.+..|++||+
T Consensus 365 F~~dd~--vVSgSDDrTvKvWdLrNMRs-------------plATIR-tdS~~NRvavs~g~~-iIAiPhDNRqvRlfDl 427 (481)
T KOG0300|consen 365 FNTDDR--VVSGSDDRTVKVWDLRNMRS-------------PLATIR-TDSPANRVAVSKGHP-IIAIPHDNRQVRLFDL 427 (481)
T ss_pred EecCCc--eeecCCCceEEEeeeccccC-------------cceeee-cCCccceeEeecCCc-eEEeccCCceEEEEec
Confidence 998875 89999999999999998553 233333 356789999998888 7877777788999999
Q ss_pred CCcccCCC
Q 015484 390 TDSIYRDD 397 (406)
Q Consensus 390 ~~~~~~~~ 397 (406)
+...+-..
T Consensus 428 nG~RlaRl 435 (481)
T KOG0300|consen 428 NGNRLARL 435 (481)
T ss_pred CCCccccC
Confidence 98866443
No 81
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=9.1e-28 Score=223.76 Aligned_cols=245 Identities=26% Similarity=0.368 Sum_probs=210.1
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
....+|.+.|.++++.. +.+++++|+.|.+++|||+.+ ..+...+.+|.+.|.++...+ ..+++|+.|
T Consensus 243 ~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~s--------g~C~~~l~gh~stv~~~~~~~---~~~~sgs~D 310 (537)
T KOG0274|consen 243 TRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCST--------GECTHSLQGHTSSVRCLTIDP---FLLVSGSRD 310 (537)
T ss_pred eeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCC--------CcEEEEecCCCceEEEEEccC---ceEeeccCC
Confidence 34779999999999987 447899999999999999887 455889999999999998753 378889999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
.+|++|+++++.. +..+.+|..+|+++..+ +.++++|+.||+|++||+.+++++..+.+|...|.++.+.+
T Consensus 311 ~tVkVW~v~n~~~------l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~ 381 (537)
T KOG0274|consen 311 NTVKVWDVTNGAC------LNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDS 381 (537)
T ss_pred ceEEEEeccCcce------EEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecC
Confidence 9999999997643 46667799999999986 78899999999999999999999999999999999998876
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGP 348 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 348 (406)
. . .+++|+.|+.|++||+++....+..+.+|..-+..+.+.. + +|++++.|++|++||...
T Consensus 382 ~-~-~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~--~-~Lvs~~aD~~Ik~WD~~~-------------- 442 (537)
T KOG0274|consen 382 E-N-RLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRD--N-FLVSSSADGTIKLWDAEE-------------- 442 (537)
T ss_pred c-c-eEEeeeeccceEeecCCchhhhhhhhcCCccccccccccc--c-eeEeccccccEEEeeccc--------------
Confidence 5 4 8999999999999999997345899999999997777653 3 699999999999999987
Q ss_pred CeeEEEecC-CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCC
Q 015484 349 PELLFSHGG-HKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRD 396 (406)
Q Consensus 349 ~~~~~~~~~-h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 396 (406)
.+++....+ |...|..+++. .. .+++++.||.+++||+.++....
T Consensus 443 ~~~~~~~~~~~~~~v~~l~~~--~~-~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 443 GECLRTLEGRHVGGVSALALG--KE-EILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred CceeeeeccCCcccEEEeecC--cc-eEEEEecCCeeEEEecccCchhh
Confidence 355566666 67889888887 23 67888899999999999987654
No 82
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=9e-29 Score=225.36 Aligned_cols=258 Identities=17% Similarity=0.366 Sum_probs=205.8
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC---CCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG---HDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
-.+..++|...++.. .++.++. ..+.||.+....... +....... -.-.+..|.|.....++|||++..|.
T Consensus 38 ~k~~~nAIs~nr~~~-qiv~AGr-s~lklyai~~~~~~~----~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~ 111 (839)
T KOG0269|consen 38 LKAKANAISVNRDIN-QIVVAGR-SLLKLYAINPNDFSE----KCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGV 111 (839)
T ss_pred cccccceEeecCCcc-eeEEecc-cceeeEeeCcccCCc----ceeeecccccceeeehhhcccccchhhhheeecCCCc
Confidence 356778888888774 4555543 357888877643321 11111111 11345678998777779999999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~ 270 (406)
|.+||+......+ .+..|..|...++++.|++...++|++|+.||.|++||+|..+...++.+....|+.++|+|..
T Consensus 112 i~vWdlnk~~rnk---~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~ 188 (839)
T KOG0269|consen 112 ISVWDLNKSIRNK---LLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGY 188 (839)
T ss_pred EEEEecCccccch---hhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCC
Confidence 9999998843322 2356788999999999999999999999999999999999999988888888999999999988
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCe
Q 015484 271 EWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPE 350 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 350 (406)
.+.|+++...|.+.+||+|....+...+.+|.++|.++.|+|++. +|||||.|++|+|||+..... .
T Consensus 189 ~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~-~lATGGRDK~vkiWd~t~~~~------------~ 255 (839)
T KOG0269|consen 189 GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE-WLATGGRDKMVKIWDMTDSRA------------K 255 (839)
T ss_pred CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCc-eeeecCCCccEEEEeccCCCc------------c
Confidence 889999999999999999999988999999999999999999775 799999999999999986221 2
Q ss_pred eEEEecCCCCCeeeEEeCCCCCcEEEEEe--CCCcEEEEeCCCccc
Q 015484 351 LLFSHGGHKAKISDFSWNKNDPWVISSVA--DDNTVQVWQMTDSIY 394 (406)
Q Consensus 351 ~~~~~~~h~~~v~~~~~s~~~~~~l~s~~--~dg~i~iw~~~~~~~ 394 (406)
.+.+.. ...+|..|.|-|..++.|++++ .|-.|+|||+....+
T Consensus 256 ~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI 300 (839)
T KOG0269|consen 256 PKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI 300 (839)
T ss_pred ceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccc
Confidence 222222 2468999999999999898876 477899999987743
No 83
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.1e-28 Score=218.93 Aligned_cols=254 Identities=16% Similarity=0.235 Sum_probs=215.2
Q ss_pred ecCCcee---EEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 113 RVDGEVN---RARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 113 ~h~~~v~---~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
.|...|+ .+..++.+.++|.+|+.||.|++|+.......+. ......+..|...|..+....+++ .|+++|.|-
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s--~~~~asme~HsDWVNDiiL~~~~~-tlIS~SsDt 95 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS--TPYIASMEHHSDWVNDIILCGNGK-TLISASSDT 95 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc--cchhhhhhhhHhHHhhHHhhcCCC-ceEEecCCc
Confidence 3445555 5566666667899999999999999988655332 123677889999999999998888 899999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc--ccc--------c-cccC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT--QQR--------V-KAHE 258 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~--~~~--------~-~~~~ 258 (406)
+|++|+..... .-++.++..|...|.|++.-..+..++|+||-|+.|.+||+.++.. +.+ + .++.
T Consensus 96 TVK~W~~~~~~----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k 171 (735)
T KOG0308|consen 96 TVKVWNAHKDN----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK 171 (735)
T ss_pred eEEEeecccCc----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc
Confidence 99999998764 1245677789999999999445889999999999999999997732 222 2 3778
Q ss_pred CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcc
Q 015484 259 KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE 338 (406)
Q Consensus 259 ~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 338 (406)
..|++++.++.+. .+++|+..+.|++||.|+.+. +..+.+|+..|..+..+++|.. +++++.||+|++||+..
T Consensus 172 ~siYSLA~N~t~t-~ivsGgtek~lr~wDprt~~k-imkLrGHTdNVr~ll~~dDGt~-~ls~sSDgtIrlWdLgq---- 244 (735)
T KOG0308|consen 172 DSIYSLAMNQTGT-IIVSGGTEKDLRLWDPRTCKK-IMKLRGHTDNVRVLLVNDDGTR-LLSASSDGTIRLWDLGQ---- 244 (735)
T ss_pred cceeeeecCCcce-EEEecCcccceEEeccccccc-eeeeeccccceEEEEEcCCCCe-EeecCCCceEEeeeccc----
Confidence 8999999999997 999999999999999999776 7778899999999999999985 88999999999999987
Q ss_pred cccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 339 QLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
..+++++..|...|+++..+|+-. .+++|+.||.|..=++.+
T Consensus 245 ----------QrCl~T~~vH~e~VWaL~~~~sf~-~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 245 ----------QRCLATYIVHKEGVWALQSSPSFT-HVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred ----------cceeeeEEeccCceEEEeeCCCcc-eEEecCCCCcEEecccCC
Confidence 577888899999999999999988 699999999999888877
No 84
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.4e-27 Score=193.92 Aligned_cols=246 Identities=15% Similarity=0.258 Sum_probs=193.2
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
-.+.|.+++|+|....++++|+-||+||+|+++... ...+ .....|.++|.+++|+.+|. .+++|+.|+.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g-----~~~~-ka~~~~~~PvL~v~Wsddgs-kVf~g~~Dk~~k~ 98 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG-----QLVP-KAQQSHDGPVLDVCWSDDGS-KVFSGGCDKQAKL 98 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCC-----cccc-hhhhccCCCeEEEEEccCCc-eEEeeccCCceEE
Confidence 346799999999766788899999999999999841 1222 45567999999999999997 9999999999999
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCC--EEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCC
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNEN--LFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNE 271 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~ 271 (406)
||+.+++. ..+..|.++|..+.|-+ +.. .|++|+.|.+|++||+|...++.++. ....++++..- .+
T Consensus 99 wDL~S~Q~-------~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~p 167 (347)
T KOG0647|consen 99 WDLASGQV-------SQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--YP 167 (347)
T ss_pred EEccCCCe-------eeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--Cc
Confidence 99999743 45567999999999986 444 88999999999999999988888876 34556666553 44
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCcEEec-CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCe
Q 015484 272 WVLATASSDTTVALFDMRKMTVPLHILS-SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPE 350 (406)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 350 (406)
+++++..++.|.+|+++++........ .-+-.+.+|+..++.+. .+.|+-+|.+.|..+..... .
T Consensus 168 -m~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~-~alGsiEGrv~iq~id~~~~------------~ 233 (347)
T KOG0647|consen 168 -MAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDG-FALGSIEGRVAIQYIDDPNP------------K 233 (347)
T ss_pred -eeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCc-eEeeeecceEEEEecCCCCc------------c
Confidence 888999999999999987654332222 22346889999998875 68999999999999876321 2
Q ss_pred eEEEecCCC---------CCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 351 LLFSHGGHK---------AKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 351 ~~~~~~~h~---------~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.-++++.|. ..|++++|+|... .|+++|.||.+.+||-...
T Consensus 234 ~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 234 DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred CceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecchhh
Confidence 222333332 2588999999877 7999999999999997654
No 85
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=5e-29 Score=215.77 Aligned_cols=227 Identities=23% Similarity=0.372 Sum_probs=185.2
Q ss_pred CCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec
Q 015484 157 DPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD 236 (406)
Q Consensus 157 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~ 236 (406)
+.++.+.+|+..|+++.|.|....+|++++.|+.|+||++.... .+++++.+|..+|.+++|+. .+..|.+++.
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~-----~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sf 278 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR-----RCLRTFKGHRKPVRDASFNN-CGTSFLSASF 278 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc-----ceehhhhcchhhhhhhhccc-cCCeeeeeec
Confidence 34678899999999999999544499999999999999998732 35788999999999999997 6777889999
Q ss_pred CCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCC
Q 015484 237 DCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHET 316 (406)
Q Consensus 237 dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~ 316 (406)
|+.|++||+++|+++..+. ....++|+.|+|++.+.+++|+.|+.|+.||+|+++. ++.+..|-+.|..+.|-+++++
T Consensus 279 D~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv-vqeYd~hLg~i~~i~F~~~g~r 356 (503)
T KOG0282|consen 279 DRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV-VQEYDRHLGAILDITFVDEGRR 356 (503)
T ss_pred ceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH-HHHHHhhhhheeeeEEccCCce
Confidence 9999999999999998886 4667899999999977999999999999999999775 8888999999999999999985
Q ss_pred EEEEEeCCCcEEEEeCCCCCccccccccc--------------------CCCCeeEEE------------ecCCC--CCe
Q 015484 317 VLASSADDRRLMVWDLNRIGDEQLELDAE--------------------DGPPELLFS------------HGGHK--AKI 362 (406)
Q Consensus 317 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--------------------~~~~~~~~~------------~~~h~--~~v 362 (406)
++++++|+.++||+.+..-......... ......++. +.||. +.-
T Consensus 357 -FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys 435 (503)
T KOG0282|consen 357 -FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS 435 (503)
T ss_pred -EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce
Confidence 8999999999999987643221111000 000111111 23554 345
Q ss_pred eeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 363 SDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 363 ~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
..+.|||+|+ +|++|+.||.+.+||..+-.
T Consensus 436 ~~v~fSpDG~-~l~SGdsdG~v~~wdwkt~k 465 (503)
T KOG0282|consen 436 CQVDFSPDGR-TLCSGDSDGKVNFWDWKTTK 465 (503)
T ss_pred eeEEEcCCCC-eEEeecCCccEEEeechhhh
Confidence 6789999999 69999999999999988753
No 86
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.8e-27 Score=188.14 Aligned_cols=245 Identities=16% Similarity=0.229 Sum_probs=200.7
Q ss_pred eEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEe
Q 015484 106 VEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSG 185 (406)
Q Consensus 106 ~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 185 (406)
..+...-+|..+|..++.+.++ ..+++|+.|..|.+||+.++ +....+.+|.+.|+.++|+.... .+++|
T Consensus 50 ~liktYsghG~EVlD~~~s~Dn-skf~s~GgDk~v~vwDV~TG--------kv~Rr~rgH~aqVNtV~fNeesS-Vv~Sg 119 (307)
T KOG0316|consen 50 ALIKTYSGHGHEVLDAALSSDN-SKFASCGGDKAVQVWDVNTG--------KVDRRFRGHLAQVNTVRFNEESS-VVASG 119 (307)
T ss_pred ceeeeecCCCceeeeccccccc-cccccCCCCceEEEEEcccC--------eeeeecccccceeeEEEecCcce-EEEec
Confidence 3445556799999999999988 56999999999999999984 45788999999999999999877 99999
Q ss_pred cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEE
Q 015484 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLS 265 (406)
Q Consensus 186 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~ 265 (406)
+.|.++++||.++. ..+|++.+......|.+|..+ ...+++|+.||+++.||+|.|+..... ...+|++++
T Consensus 120 sfD~s~r~wDCRS~----s~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs 190 (307)
T KOG0316|consen 120 SFDSSVRLWDCRSR----SFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVS 190 (307)
T ss_pred cccceeEEEEcccC----CCCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeehhh--cCCcceeEE
Confidence 99999999999884 345678888788899999986 678889999999999999998865544 357899999
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeE--EEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccccc
Q 015484 266 FNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVF--QVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELD 343 (406)
Q Consensus 266 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~--~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 343 (406)
|+++++ ..++++.|+++++.|-.+++. +...++|...-. .++++.... .+++|++||.|.+||+..
T Consensus 191 ~s~d~n-c~La~~l~stlrLlDk~tGkl-L~sYkGhkn~eykldc~l~qsdt-hV~sgSEDG~Vy~wdLvd--------- 258 (307)
T KOG0316|consen 191 FSKDGN-CSLASSLDSTLRLLDKETGKL-LKSYKGHKNMEYKLDCCLNQSDT-HVFSGSEDGKVYFWDLVD--------- 258 (307)
T ss_pred ecCCCC-EEEEeeccceeeecccchhHH-HHHhcccccceeeeeeeecccce-eEEeccCCceEEEEEecc---------
Confidence 999999 888889999999999988765 888889887544 445665554 699999999999999986
Q ss_pred ccCCCCeeEEEecCCCCC-eeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 344 AEDGPPELLFSHGGHKAK-ISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 344 ~~~~~~~~~~~~~~h~~~-v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
...+..+..+... |.+++++|.-.. +++++ ++.+.+|-
T Consensus 259 -----~~~~sk~~~~~~v~v~dl~~hp~~~~-f~~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 259 -----ETQISKLSVVSTVIVTDLSCHPTMDD-FITAT-GHGDLFWY 297 (307)
T ss_pred -----ceeeeeeccCCceeEEeeecccCccc-eeEec-CCceecee
Confidence 2444555556665 899999998874 44444 35566664
No 87
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.2e-27 Score=191.33 Aligned_cols=271 Identities=18% Similarity=0.295 Sum_probs=206.5
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC--CCCeEEEecCCC
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF--KEGYLVSGSHDN 189 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~dg 189 (406)
-+|..-|.++.|.+.| +.+|+|+.|++|+|||..+.. +.+......+.|.+.|..|.|.+. |+ .+|+++.|+
T Consensus 10 s~h~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s----~~W~~Ts~Wrah~~Si~rV~WAhPEfGq-vvA~cS~Dr 83 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDS----GTWSCTSSWRAHDGSIWRVVWAHPEFGQ-VVATCSYDR 83 (361)
T ss_pred cCCcceeeeeeecccC-ceeeeccCCCcEEEEeccCCC----CceEEeeeEEecCCcEEEEEecCccccc-eEEEEecCC
Confidence 3688899999999999 579999999999999975533 346667778899999999999753 55 999999999
Q ss_pred eEEEEeCCCcc---CCceeeeeeeeeccCccEEEEEeeCCC-CCEEEEEecCCcEEEEECCCCcc------cccc-----
Q 015484 190 KICLWDVSALA---QDKVIDAMHVYEAHESVVEDVSWHLKN-ENLFGSAGDDCQLMIWDLRTNQT------QQRV----- 254 (406)
Q Consensus 190 ~i~iwd~~~~~---~~~~~~~~~~~~~~~~~i~~i~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~------~~~~----- 254 (406)
++.||.=.... ..+......++....+.|++|+|.|.. +-.+|+++.||.+|||+...... ...+
T Consensus 84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~ 163 (361)
T KOG2445|consen 84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID 163 (361)
T ss_pred ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence 99999753211 112333445666678899999999853 55688999999999998754322 2222
Q ss_pred --cccCCCeeEEEecCCC--CcEEEEEeCC-----CcEEEEeCCCCC---CCcEEecCCCCCeEEEEEcCCCC---CEEE
Q 015484 255 --KAHEKEVNYLSFNPYN--EWVLATASSD-----TTVALFDMRKMT---VPLHILSSHTEEVFQVEWDPNHE---TVLA 319 (406)
Q Consensus 255 --~~~~~~v~~i~~~~~~--~~~l~~~~~d-----g~i~vwd~~~~~---~~~~~~~~h~~~v~~i~~~p~~~---~~l~ 319 (406)
..+..+..|+.|+|.. +.+||+|+.+ +.+.||...... ..+..+..|+.+|+.|+|.|.-. ++||
T Consensus 164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence 2466778899999742 2378888866 478999876544 23566779999999999999742 4799
Q ss_pred EEeCCCcEEEEeCCCCCcccccc------cccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 320 SSADDRRLMVWDLNRIGDEQLEL------DAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 320 s~~~dg~i~iwd~~~~~~~~~~~------~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
+++.|| |+||.+.......... ...+-+.+.+..+.+|++.|..++|+-.|. +|+|.|.||.||+|+.+
T Consensus 244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGt-iLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGT-ILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeee-EEeecCCCceeeehhhh
Confidence 999999 9999998533222111 111234566777899999999999999999 89999999999999865
No 88
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.3e-27 Score=203.36 Aligned_cols=268 Identities=18% Similarity=0.252 Sum_probs=213.3
Q ss_pred EEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc---C------CCCCceee-eCCCCCeeEEEecCC
Q 015484 108 IAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ---D------DCDPDLRL-KGHDKEGYGLSWSPF 177 (406)
Q Consensus 108 ~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~---~------~~~~~~~~-~~h~~~v~~l~~~~~ 177 (406)
....-.|.-.|.+++++|++ .+..+++.+|+|.=|++.++..... . ...+...- .+|...+.+++.+++
T Consensus 135 ~~~~~~H~~s~~~vals~d~-~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDD-KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeeccc-cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 34455799999999999998 5789999999999999987653310 0 11222222 389999999999999
Q ss_pred CCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccccc
Q 015484 178 KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAH 257 (406)
Q Consensus 178 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 257 (406)
++ +|++|+.|..|.||+.++.+. ++.+.+|.+.|.+++|-. +...+++++.|+.+++|++.....+.++.+|
T Consensus 214 gk-ylatgg~d~~v~Iw~~~t~eh------v~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~vetlyGH 285 (479)
T KOG0299|consen 214 GK-YLATGGRDRHVQIWDCDTLEH------VKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSYVETLYGH 285 (479)
T ss_pred Cc-EEEecCCCceEEEecCcccch------hhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhHHHHHHhCC
Confidence 99 999999999999999988643 466789999999999996 6777889999999999999999999999999
Q ss_pred CCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCc
Q 015484 258 EKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGD 337 (406)
Q Consensus 258 ~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 337 (406)
.+.|.+|.....++ .+.+|+.|+++++|++.. .....+.+|.+.+-|++|-.+. .+++|+.+|.|.+|++.+...
T Consensus 286 qd~v~~IdaL~reR-~vtVGgrDrT~rlwKi~e--esqlifrg~~~sidcv~~In~~--HfvsGSdnG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 286 QDGVLGIDALSRER-CVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSIDCVAFINDE--HFVSGSDNGSIALWSLLKKKP 360 (479)
T ss_pred ccceeeechhcccc-eEEeccccceeEEEeccc--cceeeeeCCCCCeeeEEEeccc--ceeeccCCceEEEeeecccCc
Confidence 99999999887777 777788999999999954 3356778899999999998776 389999999999999987332
Q ss_pred ccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 338 EQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
......++...+.+ ....+..+|++++..|... ++|+|+.+|.|++|.+.++
T Consensus 361 lf~~~~AHgv~~~~--~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 361 LFTSRLAHGVIPEL--DPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred eeEeeccccccCCc--cccccccceeeeEecccCc-eEEecCCCCceEEEEecCC
Confidence 22111111110110 0011234899999999888 8999999999999999998
No 89
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=6.3e-27 Score=200.18 Aligned_cols=249 Identities=19% Similarity=0.308 Sum_probs=205.6
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
-.+.++...|.. ..+++|+.|.++.++|.... +.+..+.||...|+.+.++++.. .+++++.|-.|++|.
T Consensus 220 pgi~ald~~~s~-~~ilTGG~d~~av~~d~~s~--------q~l~~~~Gh~kki~~v~~~~~~~-~v~~aSad~~i~vws 289 (506)
T KOG0289|consen 220 PGITALDIIPSS-SKILTGGEDKTAVLFDKPSN--------QILATLKGHTKKITSVKFHKDLD-TVITASADEIIRVWS 289 (506)
T ss_pred CCeeEEeecCCC-CcceecCCCCceEEEecchh--------hhhhhccCcceEEEEEEeccchh-heeecCCcceEEeec
Confidence 467788888874 67999999999999999874 34778999999999999999888 999999999999999
Q ss_pred CCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccc--cCCCeeEEEecCCCCcE
Q 015484 196 VSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA--HEKEVNYLSFNPYNEWV 273 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~ 273 (406)
....... .....|..+|+.+..+| .+.+|++++.||+..+.|++++..+..... ..-.+++.+|||+|- +
T Consensus 290 ~~~~s~~------~~~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-i 361 (506)
T KOG0289|consen 290 VPLSSEP------TSSRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-I 361 (506)
T ss_pred cccccCc------cccccccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-E
Confidence 8775432 34457999999999999 789999999999999999999988665532 345689999999998 9
Q ss_pred EEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEE
Q 015484 274 LATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLF 353 (406)
Q Consensus 274 l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 353 (406)
|++|..||.|++||+.+... +..|.+|.++|..|+|+.+| |+|++++.|+.|++||++...... .+
T Consensus 362 fgtgt~d~~vkiwdlks~~~-~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~k------------t~ 427 (506)
T KOG0289|consen 362 FGTGTPDGVVKIWDLKSQTN-VAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFK------------TI 427 (506)
T ss_pred EeccCCCceEEEEEcCCccc-cccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccc------------ee
Confidence 99999999999999999775 88999999999999999999 579999999999999999843211 11
Q ss_pred EecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCCCc
Q 015484 354 SHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDDD 398 (406)
Q Consensus 354 ~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 398 (406)
... ....|.++.|.+.|.| |+.+|.|=.|++++-.+..+....
T Consensus 428 ~l~-~~~~v~s~~fD~SGt~-L~~~g~~l~Vy~~~k~~k~W~~~~ 470 (506)
T KOG0289|consen 428 QLD-EKKEVNSLSFDQSGTY-LGIAGSDLQVYICKKKTKSWTEIK 470 (506)
T ss_pred ecc-ccccceeEEEcCCCCe-EEeecceeEEEEEecccccceeee
Confidence 112 1236999999999995 666677777777775566665443
No 90
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=2e-27 Score=221.45 Aligned_cols=239 Identities=25% Similarity=0.368 Sum_probs=207.5
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCcee-eeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLR-LKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
|...+.+..|++ .++++++.+++|++|+..+.. .... +.+|.+.|.++++.. +..+|++|+.|.+++
T Consensus 207 ~~~~~~~~q~~~---~~~~~~s~~~tl~~~~~~~~~--------~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~r 274 (537)
T KOG0274|consen 207 DDHVVLCLQLHD---GFFKSGSDDSTLHLWDLNNGY--------LILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTER 274 (537)
T ss_pred Ccchhhhheeec---CeEEecCCCceeEEeecccce--------EEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEE
Confidence 567888888882 469999999999999998842 2444 889999999999987 444999999999999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCc
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEW 272 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 272 (406)
+||..++.+ ...+.+|...|.++... +..+++|+.|.+|++|++.++..+..+.+|..+|+++..+ +.
T Consensus 275 vWd~~sg~C------~~~l~gh~stv~~~~~~---~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~- 342 (537)
T KOG0274|consen 275 VWDCSTGEC------THSLQGHTSSVRCLTID---PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EP- 342 (537)
T ss_pred eEecCCCcE------EEEecCCCceEEEEEcc---CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CC-
Confidence 999988864 57778999999998865 5777889999999999999999999998899999999998 55
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCC-ee
Q 015484 273 VLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP-EL 351 (406)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~ 351 (406)
++++|+.|++|++||.+.++. ++.+.+|...|.++.+.+. . .+++|+.|+.|++||+++ . ++
T Consensus 343 ~lvsgs~d~~v~VW~~~~~~c-l~sl~gH~~~V~sl~~~~~-~-~~~Sgs~D~~IkvWdl~~--------------~~~c 405 (537)
T KOG0274|consen 343 LLVSGSYDGTVKVWDPRTGKC-LKSLSGHTGRVYSLIVDSE-N-RLLSGSLDTTIKVWDLRT--------------KRKC 405 (537)
T ss_pred EEEEEecCceEEEEEhhhcee-eeeecCCcceEEEEEecCc-c-eEEeeeeccceEeecCCc--------------hhhh
Confidence 899999999999999997665 9999999999999998876 3 599999999999999998 3 57
Q ss_pred EEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCC
Q 015484 352 LFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRD 396 (406)
Q Consensus 352 ~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 396 (406)
+..+.+|...+.++.+..+ +|++++.|+.|++||..++....
T Consensus 406 ~~tl~~h~~~v~~l~~~~~---~Lvs~~aD~~Ik~WD~~~~~~~~ 447 (537)
T KOG0274|consen 406 IHTLQGHTSLVSSLLLRDN---FLVSSSADGTIKLWDAEEGECLR 447 (537)
T ss_pred hhhhcCCcccccccccccc---eeEeccccccEEEeecccCceee
Confidence 7888899998877776644 79999999999999999886644
No 91
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=6.2e-27 Score=190.98 Aligned_cols=269 Identities=20% Similarity=0.319 Sum_probs=205.7
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCC--CCC-----ceeeeCCCCCeeEEEecCCCCCeEEE
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDD--CDP-----DLRLKGHDKEGYGLSWSPFKEGYLVS 184 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~-----~~~~~~h~~~v~~l~~~~~~~~~l~s 184 (406)
-.|.+.|+.+...+....++++|+.||.|.|||+++........ .+. ...-.+|.-.|..+.|-|-+.+.+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46899999999999777899999999999999998754221110 110 11224678889999999988889999
Q ss_pred ecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCC--CCEEEEEecCCcEEEEECCCCcccccccccCCCee
Q 015484 185 GSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKN--ENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVN 262 (406)
Q Consensus 185 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 262 (406)
++.|.++++||.++.+.. ..|+ ..+.|.+-+|+|.. ..++|+|..+-.|++.|+.+|.....+.+|.+.|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a------~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl 192 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEA------VDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL 192 (397)
T ss_pred ccccceEEEeecccceee------EEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence 999999999999986543 2222 45678877888743 45788888999999999999999999999999999
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCCCCCC-------------C-cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEE
Q 015484 263 YLSFNPYNEWVLATASSDTTVALFDMRKMTV-------------P-LHILSSHTEEVFQVEWDPNHETVLASSADDRRLM 328 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-------------~-~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~ 328 (406)
++.|+|..++.|++|+.||.|++||+|...- | ++.-.+|.+.|+.++|..++.+ +++++.|..++
T Consensus 193 aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~-l~~~gtd~r~r 271 (397)
T KOG4283|consen 193 AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY-LASCGTDDRIR 271 (397)
T ss_pred EEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchh-hhhccCccceE
Confidence 9999999999999999999999999986521 1 2234568889999999999985 88999999999
Q ss_pred EEeCCCCCccccccccc---------------------------------CCCCeeEEEecCCCCCeeeEEeCCCCCcEE
Q 015484 329 VWDLNRIGDEQLELDAE---------------------------------DGPPELLFSHGGHKAKISDFSWNKNDPWVI 375 (406)
Q Consensus 329 iwd~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l 375 (406)
+|+..++.......... ......+..+..|...|.+..+.|+-+ -.
T Consensus 272 ~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq-~~ 350 (397)
T KOG4283|consen 272 VWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFE-QC 350 (397)
T ss_pred EeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchh-hh
Confidence 99998765433221110 011223333456666677777777766 46
Q ss_pred EEEeCCCcEEEEeC
Q 015484 376 SSVADDNTVQVWQM 389 (406)
Q Consensus 376 ~s~~~dg~i~iw~~ 389 (406)
.+|..|+.|..|-+
T Consensus 351 ~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 351 FTGDMNGNIYMWSP 364 (397)
T ss_pred hccccCCccccccc
Confidence 67777888888876
No 92
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=2e-26 Score=197.16 Aligned_cols=248 Identities=20% Similarity=0.291 Sum_probs=204.5
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
..+|.-.|+.+.|+|+. ..+++++.|-.|+||...... .......|..+|+.+..+|.|. ||++++.||+
T Consensus 257 ~~Gh~kki~~v~~~~~~-~~v~~aSad~~i~vws~~~~s--------~~~~~~~h~~~V~~ls~h~tge-YllsAs~d~~ 326 (506)
T KOG0289|consen 257 LKGHTKKITSVKFHKDL-DTVITASADEIIRVWSVPLSS--------EPTSSRPHEEPVTGLSLHPTGE-YLLSASNDGT 326 (506)
T ss_pred ccCcceEEEEEEeccch-hheeecCCcceEEeecccccc--------CccccccccccceeeeeccCCc-EEEEecCCce
Confidence 44799999999999988 679999999999999998732 3556778999999999999999 9999999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~ 270 (406)
..+.|++++..... ..-....-.+++.+||| ++.+|++|..||.|++||+..+..+..|.+|.++|..++|+.+|
T Consensus 327 w~Fsd~~~g~~lt~----vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENG 401 (506)
T KOG0289|consen 327 WAFSDISSGSQLTV----VSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENG 401 (506)
T ss_pred EEEEEccCCcEEEE----EeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCc
Confidence 99999998753211 11112234689999999 79999999999999999999999999999999999999999988
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCcEEecC-CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCC
Q 015484 271 EWVLATASSDTTVALFDMRKMTVPLHILSS-HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (406)
- +|++++.|+.|++||+|..+. ..++.. ....|.++.|.+.|. +|+.++.|=.|++++-.+ ...
T Consensus 402 Y-~Lat~add~~V~lwDLRKl~n-~kt~~l~~~~~v~s~~fD~SGt-~L~~~g~~l~Vy~~~k~~------------k~W 466 (506)
T KOG0289|consen 402 Y-WLATAADDGSVKLWDLRKLKN-FKTIQLDEKKEVNSLSFDQSGT-YLGIAGSDLQVYICKKKT------------KSW 466 (506)
T ss_pred e-EEEEEecCCeEEEEEehhhcc-cceeeccccccceeEEEcCCCC-eEEeecceeEEEEEeccc------------ccc
Confidence 6 999999999999999998775 444433 234799999999997 477777776666666433 123
Q ss_pred eeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 350 ELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 350 ~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
..+..+..|.+..+.+.|....+ ++++++.|..++++.+
T Consensus 467 ~~~~~~~~~sg~st~v~Fg~~aq-~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 467 TEIKELADHSGLSTGVRFGEHAQ-YLASTSMDAILRLYAL 505 (506)
T ss_pred eeeehhhhcccccceeeecccce-EEeeccchhheEEeec
Confidence 55556667888899999999888 6999999999999865
No 93
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=4.5e-26 Score=182.89 Aligned_cols=243 Identities=20% Similarity=0.345 Sum_probs=199.8
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
..+|.+.|-.++|+|..+.++++++.|.+|++||+... ++........+.+ -+.|+|+|. +++.++.|..
T Consensus 60 ~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~--------k~~~~i~~~~eni-~i~wsp~g~-~~~~~~kdD~ 129 (313)
T KOG1407|consen 60 YRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG--------KCTARIETKGENI-NITWSPDGE-YIAVGNKDDR 129 (313)
T ss_pred ccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC--------cEEEEeeccCcce-EEEEcCCCC-EEEEecCccc
Confidence 45799999999999999899999999999999999873 4455554444444 678999999 9999999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~ 270 (406)
|...|.++.+... . ......++.++|+- .+++|+.....|.|.|......+++..+++|.....||.|+|+|
T Consensus 130 it~id~r~~~~~~------~-~~~~~e~ne~~w~~-~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~G 201 (313)
T KOG1407|consen 130 ITFIDARTYKIVN------E-EQFKFEVNEISWNN-SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDG 201 (313)
T ss_pred EEEEEecccceee------h-hcccceeeeeeecC-CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCC
Confidence 9999998754321 1 12456788899994 67787777778999999999999999999999999999999999
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCe
Q 015484 271 EWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPE 350 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 350 (406)
+ +||+|+.|-.+.+||+...-+ ++.+..+.-+|..+.|+.+|+ +||++++|..|-|=++.++.
T Consensus 202 r-yfA~GsADAlvSLWD~~ELiC-~R~isRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~vetGd-------------- 264 (313)
T KOG1407|consen 202 R-YFATGSADALVSLWDVDELIC-ERCISRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVETGD-------------- 264 (313)
T ss_pred c-eEeeccccceeeccChhHhhh-heeeccccCceEEEEeccCcc-eeeccCccceEEeEecccCC--------------
Confidence 9 999999999999999998665 778888999999999999997 79999999999988887733
Q ss_pred eEEEecCCCCCeeeEEeCCCCCcEEEEEeCC---------CcEEEEeCC
Q 015484 351 LLFSHGGHKAKISDFSWNKNDPWVISSVADD---------NTVQVWQMT 390 (406)
Q Consensus 351 ~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~d---------g~i~iw~~~ 390 (406)
.+... .+.++-..++|+|..+ +||-++.| |.|+|+-++
T Consensus 265 ~~~eI-~~~~~t~tVAWHPk~~-LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 265 RVWEI-PCEGPTFTVAWHPKRP-LLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred eEEEe-eccCCceeEEecCCCc-eeeEEecCCCCccccccceeEEecCC
Confidence 22332 2678899999999988 67666554 456666544
No 94
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=3.6e-27 Score=192.35 Aligned_cols=229 Identities=24% Similarity=0.464 Sum_probs=186.8
Q ss_pred eeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCce--e----ee---eeeeeccCccEEEEEeeCCCCCEEE
Q 015484 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKV--I----DA---MHVYEAHESVVEDVSWHLKNENLFG 232 (406)
Q Consensus 162 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~----~~---~~~~~~~~~~i~~i~~~p~~~~~l~ 232 (406)
...|.+.|.++...+....++++|+.||.|.+||+++...... + .+ ...-.+|+-.|.++.|-|.+..+|.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 3468899999999987666999999999999999987542110 1 11 1223468889999999999999999
Q ss_pred EEecCCcEEEEECCCCcccccccccCCCeeEEEecCCC--CcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEE
Q 015484 233 SAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN--EWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEW 310 (406)
Q Consensus 233 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~ 310 (406)
+++-|.++++||+.+.+....++ ..+.|++-+++|-. ..++|+|..+-.|++.|+.++.. -+++.+|...|.++.|
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~-sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF-SHTLSGHRDGVLAVEW 196 (397)
T ss_pred cccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc-eeeeccccCceEEEEe
Confidence 99999999999999988777775 56778888888843 34788888899999999999776 8899999999999999
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC-CCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 311 DPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED-GPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 311 ~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
+|..+++|++|+.||.|++||++.........+... ..+..+....+|.+.|..++|+.++.+ +++++.|..+++|+.
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~-l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY-LASCGTDDRIRVWNM 275 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchh-hhhccCccceEEeec
Confidence 999999999999999999999998743333222222 334444466789999999999999995 788899999999999
Q ss_pred CCcc
Q 015484 390 TDSI 393 (406)
Q Consensus 390 ~~~~ 393 (406)
.+|.
T Consensus 276 ~~G~ 279 (397)
T KOG4283|consen 276 ESGR 279 (397)
T ss_pred ccCc
Confidence 8874
No 95
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.5e-26 Score=196.68 Aligned_cols=254 Identities=17% Similarity=0.264 Sum_probs=199.8
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
...|..+|.-+.|+++| .+||+++.|.+..||.+..... .+..+++.+|..+|..+.|||+.+ +|++++.|..
T Consensus 220 l~~htdEVWfl~FS~nG-kyLAsaSkD~Taiiw~v~~d~~-----~kl~~tlvgh~~~V~yi~wSPDdr-yLlaCg~~e~ 292 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFSHNG-KYLASASKDSTAIIWIVVYDVH-----FKLKKTLVGHSQPVSYIMWSPDDR-YLLACGFDEV 292 (519)
T ss_pred HhhCCCcEEEEEEcCCC-eeEeeccCCceEEEEEEecCcc-----eeeeeeeecccCceEEEEECCCCC-eEEecCchHh
Confidence 34699999999999999 6899999999999999876432 455788999999999999999998 9999999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccc-cCCCeeEEEecCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA-HEKEVNYLSFNPY 269 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~i~~~~~ 269 (406)
+.+||+.++.....++ .++...+.+++|.| ++..|++|+.|+.+..||+.. +......+ ....|.+++..++
T Consensus 293 ~~lwDv~tgd~~~~y~-----~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~D 365 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYP-----SGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITYD 365 (519)
T ss_pred eeeccCCcchhhhhcc-----cCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCc-chhhcccccccceeEEEEEcCC
Confidence 9999999986532221 22457899999999 677788999999999999874 33444433 2356999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCC
Q 015484 270 NEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (406)
|. .+++.+.|..|++|+...... .. +..-..+|++++.+.+++ ++++.-.+..+.+||+.. .
T Consensus 366 gk-~vl~v~~d~~i~l~~~e~~~d-r~-lise~~~its~~iS~d~k-~~LvnL~~qei~LWDl~e--------------~ 427 (519)
T KOG0293|consen 366 GK-YVLLVTVDKKIRLYNREARVD-RG-LISEEQPITSFSISKDGK-LALVNLQDQEIHLWDLEE--------------N 427 (519)
T ss_pred Cc-EEEEEecccceeeechhhhhh-hc-cccccCceeEEEEcCCCc-EEEEEcccCeeEEeecch--------------h
Confidence 99 666666899999999876433 22 223357899999999997 577777899999999985 3
Q ss_pred eeEEEecCCCCC--eeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCC
Q 015484 350 ELLFSHGGHKAK--ISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRD 396 (406)
Q Consensus 350 ~~~~~~~~h~~~--v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 396 (406)
.++..+.||... |..-+|-.....+++||++|+.|+||+-.++.+..
T Consensus 428 ~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~ 476 (519)
T KOG0293|consen 428 KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLA 476 (519)
T ss_pred hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeE
Confidence 455555666543 44445554443489999999999999998886543
No 96
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=5.5e-27 Score=199.35 Aligned_cols=237 Identities=19% Similarity=0.278 Sum_probs=190.7
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
+-.+.|+++.|.+++. .+++++.|+.+++|++.. .....++.+|++.|+++.|..... .+++|+.|.+|+
T Consensus 217 Gs~g~it~~d~d~~~~-~~iAas~d~~~r~Wnvd~--------~r~~~TLsGHtdkVt~ak~~~~~~-~vVsgs~DRtiK 286 (459)
T KOG0288|consen 217 GSLGNITSIDFDSDNK-HVIAASNDKNLRLWNVDS--------LRLRHTLSGHTDKVTAAKFKLSHS-RVVSGSADRTIK 286 (459)
T ss_pred ccCCCcceeeecCCCc-eEEeecCCCceeeeeccc--------hhhhhhhcccccceeeehhhcccc-ceeeccccchhh
Confidence 4458899999999995 566678899999999988 445788999999999999998666 699999999999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCc
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEW 272 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 272 (406)
+||+.+..+.+.+- ..+.+++|+.+ ...+++|-.|+.|++||+++.........+. .|+++..++++.
T Consensus 287 ~WDl~k~~C~kt~l-------~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~- 354 (459)
T KOG0288|consen 287 LWDLQKAYCSKTVL-------PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGL- 354 (459)
T ss_pred hhhhhhhheecccc-------ccccccceEec---ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCe-
Confidence 99999865543321 24567777765 5667899999999999999999888887554 899999999998
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcEEecC----CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCC
Q 015484 273 VLATASSDTTVALFDMRKMTVPLHILSS----HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGP 348 (406)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~----h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 348 (406)
-+.+++.|.++.+.|+|+... ...+.+ -....+.+.|+|+++ ++++|+.||.|+||++.+.
T Consensus 355 ~lLsssRDdtl~viDlRt~eI-~~~~sA~g~k~asDwtrvvfSpd~~-YvaAGS~dgsv~iW~v~tg------------- 419 (459)
T KOG0288|consen 355 ELLSSSRDDTLKVIDLRTKEI-RQTFSAEGFKCASDWTRVVFSPDGS-YVAAGSADGSVYIWSVFTG------------- 419 (459)
T ss_pred EEeeecCCCceeeeecccccE-EEEeeccccccccccceeEECCCCc-eeeeccCCCcEEEEEccCc-------------
Confidence 677779999999999998653 334332 123489999999998 5999999999999999873
Q ss_pred CeeEEEecCC--CCCeeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 349 PELLFSHGGH--KAKISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 349 ~~~~~~~~~h--~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
++.+..... ...|++++|+|.|.+ +++++.++.+.+|.
T Consensus 420 -KlE~~l~~s~s~~aI~s~~W~~sG~~-Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 420 -KLEKVLSLSTSNAAITSLSWNPSGSG-LLSADKQKAVTLWT 459 (459)
T ss_pred -eEEEEeccCCCCcceEEEEEcCCCch-hhcccCCcceEecC
Confidence 333333322 236999999999996 67888999999994
No 97
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=8e-27 Score=192.76 Aligned_cols=244 Identities=16% Similarity=0.233 Sum_probs=207.9
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee-CCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK-GHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
..-|..+|.|+.|+.+. ..||+|+.||.|+||.+.++ .++..+. .|+..|+|+.|+.++. .+++++.|.
T Consensus 259 fMMmd~aVlci~FSRDs-EMlAsGsqDGkIKvWri~tG--------~ClRrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~ 328 (508)
T KOG0275|consen 259 FMMMDDAVLCISFSRDS-EMLASGSQDGKIKVWRIETG--------QCLRRFDRAHTKGVTCLSFSRDNS-QILSASFDQ 328 (508)
T ss_pred eeecccceEEEeecccH-HHhhccCcCCcEEEEEEecc--------hHHHHhhhhhccCeeEEEEccCcc-hhhcccccc
Confidence 44688999999999998 68999999999999999984 3355555 8999999999999998 999999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccc--ccCCCeeEEEec
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK--AHEKEVNYLSFN 267 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~i~~~ 267 (406)
++++--+.+++. +..+.+|.+.|+...|.+ +++.+++++.||+|++|+.++.+++.+++ +...+|+++-.-
T Consensus 329 tvRiHGlKSGK~------LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~ 401 (508)
T KOG0275|consen 329 TVRIHGLKSGKC------LKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILL 401 (508)
T ss_pred eEEEeccccchh------HHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEc
Confidence 999999988754 466789999999999998 78888899999999999999999988884 345688999998
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC---CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc
Q 015484 268 PYNEWVLATASSDTTVALFDMRKMTVPLHILSS---HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 344 (406)
|.++..++++...++|.+.++.. +.+..+.. ..+...++..+|.|+ ++.+.++|+.++.|.+.+
T Consensus 402 PKnpeh~iVCNrsntv~imn~qG--QvVrsfsSGkREgGdFi~~~lSpkGe-wiYcigED~vlYCF~~~s---------- 468 (508)
T KOG0275|consen 402 PKNPEHFIVCNRSNTVYIMNMQG--QVVRSFSSGKREGGDFINAILSPKGE-WIYCIGEDGVLYCFSVLS---------- 468 (508)
T ss_pred CCCCceEEEEcCCCeEEEEeccc--eEEeeeccCCccCCceEEEEecCCCc-EEEEEccCcEEEEEEeec----------
Confidence 98887899999999999998874 33555543 234567788999998 589999999999999887
Q ss_pred cCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 345 EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 345 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
..+-..+.-|...|..++-+|..+ ++|+-++||.+++|.+
T Consensus 469 ----G~LE~tl~VhEkdvIGl~HHPHqN-llAsYsEDgllKLWkp 508 (508)
T KOG0275|consen 469 ----GKLERTLPVHEKDVIGLTHHPHQN-LLASYSEDGLLKLWKP 508 (508)
T ss_pred ----CceeeeeecccccccccccCcccc-hhhhhcccchhhhcCC
Confidence 345556677888999999999888 8999999999999963
No 98
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=8.8e-26 Score=185.49 Aligned_cols=244 Identities=14% Similarity=0.221 Sum_probs=190.7
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
-...|.++.|+|.+. .|++++.||.+++|+..... ....-.|..++.+++|.+.. .+++|+.||.|+.
T Consensus 12 P~d~IS~v~f~~~~~-~LLvssWDgslrlYdv~~~~---------l~~~~~~~~plL~c~F~d~~--~~~~G~~dg~vr~ 79 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSS-DLLVSSWDGSLRLYDVPANS---------LKLKFKHGAPLLDCAFADES--TIVTGGLDGQVRR 79 (323)
T ss_pred ChhceeeEEEcCcCC-cEEEEeccCcEEEEeccchh---------hhhheecCCceeeeeccCCc--eEEEeccCceEEE
Confidence 357899999998885 56666799999999998742 22234588999999999743 6999999999999
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcE
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWV 273 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 273 (406)
+|++++.. ..+..|..+|.||..++ ....+++|+.|++|++||.|.......+.. ...|.++... +. .
T Consensus 80 ~Dln~~~~-------~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~-~ 147 (323)
T KOG1036|consen 80 YDLNTGNE-------DQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GN-R 147 (323)
T ss_pred EEecCCcc-------eeeccCCCceEEEEeec-cCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CC-E
Confidence 99998754 34457999999999998 677888999999999999998666666643 3488888876 44 7
Q ss_pred EEEEeCCCcEEEEeCCCCCCCcEEec-CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeE
Q 015484 274 LATASSDTTVALFDMRKMTVPLHILS-SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELL 352 (406)
Q Consensus 274 l~~~~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (406)
|++|+.+..+.+||+|+...+.+... .-+-.+.++++.|++.. ++.++-||.|.+=.+....+.+ ...
T Consensus 148 LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eG-y~~sSieGRVavE~~d~s~~~~----------skk 216 (323)
T KOG1036|consen 148 LVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEG-YVVSSIEGRVAVEYFDDSEEAQ----------SKK 216 (323)
T ss_pred EEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCc-eEEEeecceEEEEccCCchHHh----------hhc
Confidence 89999999999999999887653322 23457899999998776 7888999999887666532211 222
Q ss_pred EEecCCC---------CCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 353 FSHGGHK---------AKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 353 ~~~~~h~---------~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
+.++.|. -+|++++|+|-.. .|+|||.||.|.+||+.+..
T Consensus 217 yaFkCHr~~~~~~~~~yPVNai~Fhp~~~-tfaTgGsDG~V~~Wd~~~rK 265 (323)
T KOG1036|consen 217 YAFKCHRLSEKDTEIIYPVNAIAFHPIHG-TFATGGSDGIVNIWDLFNRK 265 (323)
T ss_pred eeEEeeecccCCceEEEEeceeEeccccc-eEEecCCCceEEEccCcchh
Confidence 3333332 3699999999877 79999999999999998763
No 99
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.5e-26 Score=198.50 Aligned_cols=282 Identities=23% Similarity=0.303 Sum_probs=212.0
Q ss_pred hhhhcCCCCCC--ceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCC-CCCCCCCC-CCC-CC
Q 015484 29 DLIVSHPLEWP--SLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDS-ESNVGGKN-ENP-VI 103 (406)
Q Consensus 29 ~~~~~~~~~~p--~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~-~~~~~~~~-~~~-~~ 103 (406)
+++.+|.+-.| .||++|+-..... .-....+.+||.. -.|.||.+.+-+.-. .+..|... -.. ..
T Consensus 163 nlYvHHD~ilpafPLC~ewld~~~~~-----~~~gNyvAiGtmd-----p~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~ 232 (463)
T KOG0270|consen 163 NLYVHHDFILPAFPLCIEWLDHGSKS-----GGAGNYVAIGTMD-----PEIEIWDLDIVDAVLPCVTLGSKASKKKKKK 232 (463)
T ss_pred ceeEecceeccCcchhhhhhhcCCCC-----CCCcceEEEeccC-----ceeEEeccccccccccceeechhhhhhhhhh
Confidence 45566665444 5799999873322 2234688999985 367888777431100 12222111 000 00
Q ss_pred CCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEE
Q 015484 104 PKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLV 183 (406)
Q Consensus 104 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 183 (406)
++ +-...-+|+..|..++|+..-+++||+|+.|.+|.+||+.+ .+|..++..|.+.|.+++|+|.....|+
T Consensus 233 ~k-~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~--------g~p~~s~~~~~k~Vq~l~wh~~~p~~LL 303 (463)
T KOG0270|consen 233 GK-RSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT--------GKPKSSITHHGKKVQTLEWHPYEPSVLL 303 (463)
T ss_pred cc-cccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCC--------CCcceehhhcCCceeEEEecCCCceEEE
Confidence 01 11122369999999999998889999999999999999998 5667888899999999999999888999
Q ss_pred EecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC-cccccccccCCCee
Q 015484 184 SGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN-QTQQRVKAHEKEVN 262 (406)
Q Consensus 184 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~ 262 (406)
+|+.|++|.+.|.+...... ..+ ...+.|..++|+|.....|++++.||.|+-+|+|.. +++.++++|...|.
T Consensus 304 sGs~D~~V~l~D~R~~~~s~-----~~w-k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~IS 377 (463)
T KOG0270|consen 304 SGSYDGTVALKDCRDPSNSG-----KEW-KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEIS 377 (463)
T ss_pred eccccceEEeeeccCccccC-----ceE-EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcc
Confidence 99999999999998532211 111 235789999999999999999999999999999986 78899999999999
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCCCCCCC-cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 015484 263 YLSFNPYNEWVLATASSDTTVALFDMRKMTVP-LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI 335 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~ 335 (406)
++++++..++++++++.|+.+++|++...... +......-+...|+++.|+-..+++.|+..+.++|||+.+.
T Consensus 378 gl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 378 GLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred eEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 99999999999999999999999998754321 11111112347788999998888999999999999999763
No 100
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.3e-26 Score=191.00 Aligned_cols=263 Identities=22% Similarity=0.359 Sum_probs=214.9
Q ss_pred EEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeC------CCccc------cc--------c------------CC
Q 015484 108 IAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDC------AKQAE------KQ--------Q------------DD 155 (406)
Q Consensus 108 ~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~------~~~~~------~~--------~------------~~ 155 (406)
+.+..+|.+.|++|+|++.+ .++++++.|++..||.. ..... .. . .-
T Consensus 183 L~~Y~GH~GSVNsikfh~s~-~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ti 261 (481)
T KOG0300|consen 183 LATYTGHTGSVNSIKFHNSG-LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTI 261 (481)
T ss_pred eeeecccccceeeEEecccc-ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCcee
Confidence 45567899999999999988 79999999999999982 21000 00 0 01
Q ss_pred CCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe
Q 015484 156 CDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG 235 (406)
Q Consensus 156 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~ 235 (406)
..|+..+.+|...|.+..|...|. .+++++.|.+..+||++++.. +..+.+|....+.++-+| ..+++++.+
T Consensus 262 RvPl~~ltgH~~vV~a~dWL~gg~-Q~vTaSWDRTAnlwDVEtge~------v~~LtGHd~ELtHcstHp-tQrLVvTsS 333 (481)
T KOG0300|consen 262 RVPLMRLTGHRAVVSACDWLAGGQ-QMVTASWDRTANLWDVETGEV------VNILTGHDSELTHCSTHP-TQRLVVTSS 333 (481)
T ss_pred eeeeeeeeccccceEehhhhcCcc-eeeeeeccccceeeeeccCce------eccccCcchhccccccCC-cceEEEEec
Confidence 235678899999999999999887 999999999999999999753 466789999999999999 789999999
Q ss_pred cCCcEEEEECCCC-cccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCC
Q 015484 236 DDCQLMIWDLRTN-QTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNH 314 (406)
Q Consensus 236 ~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~ 314 (406)
.|.+.++||.+.. ..+..|.+|...|+++.|..+.+ +++|+.|.+|++||++++..|+.++.. .++++.++.+..+
T Consensus 334 rDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~--vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~ 410 (481)
T KOG0300|consen 334 RDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR--VVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGH 410 (481)
T ss_pred cCceeEeccchhhcceeeeecccccceeEEEEecCCc--eeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCC
Confidence 9999999999843 33667899999999999998775 999999999999999999999988875 6789999999887
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCC-cEEEEEeCCCcEEEEeCCCcc
Q 015484 315 ETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDP-WVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 315 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~~l~s~~~dg~i~iw~~~~~~ 393 (406)
+ +|+.-..+..|++||++..... .-+-...++|...|++++|..+.+ .-|.++|.|..+.=|++....
T Consensus 411 ~-iIAiPhDNRqvRlfDlnG~Rla----------RlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 411 P-IIAIPHDNRQVRLFDLNGNRLA----------RLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred c-eEEeccCCceEEEEecCCCccc----------cCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 6 7888888899999999863221 112234578999999999986644 136788999999999987643
No 101
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.95 E-value=1.9e-26 Score=194.06 Aligned_cols=224 Identities=21% Similarity=0.379 Sum_probs=185.4
Q ss_pred eeCCCCCeeEEEecCCCC-CeEEEecCCCeEEEEeCCCcc----------CCceeeeeeeeeccCccEEEEEeeCCCCCE
Q 015484 162 LKGHDKEGYGLSWSPFKE-GYLVSGSHDNKICLWDVSALA----------QDKVIDAMHVYEAHESVVEDVSWHLKNENL 230 (406)
Q Consensus 162 ~~~h~~~v~~l~~~~~~~-~~l~s~~~dg~i~iwd~~~~~----------~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~ 230 (406)
...|.+.+..+.-++.++ .+.++=+..|.|.||++...- .....+++.++.+|...-..++|+|.....
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 446788888888877653 256666788999999986421 123456778899999999999999977777
Q ss_pred EEEEecCCcEEEEECCCCcc---cccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC-CCcEEecCCCCCeE
Q 015484 231 FGSAGDDCQLMIWDLRTNQT---QQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT-VPLHILSSHTEEVF 306 (406)
Q Consensus 231 l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~h~~~v~ 306 (406)
+++|..-+.|++|...++.- ...+.+|+..|-.++|+|....+|++|+.||+|+|||+|... .+....++|.+.|+
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN 306 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN 306 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee
Confidence 88999999999999988654 244567999999999999998899999999999999999873 34445589999999
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEE
Q 015484 307 QVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQV 386 (406)
Q Consensus 307 ~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~i 386 (406)
.|.|+...+ +||+|+.||+++|||++.... ..++..+.-|..+|+++.|+|.....|+++|.|..|.|
T Consensus 307 VISWnr~~~-lLasG~DdGt~~iwDLR~~~~-----------~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qiti 374 (440)
T KOG0302|consen 307 VISWNRREP-LLASGGDDGTLSIWDLRQFKS-----------GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITI 374 (440)
T ss_pred eEEccCCcc-eeeecCCCceEEEEEhhhccC-----------CCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEE
Confidence 999999987 899999999999999998432 35677778899999999999987778999999999999
Q ss_pred EeCCCcccCCC
Q 015484 387 WQMTDSIYRDD 397 (406)
Q Consensus 387 w~~~~~~~~~~ 397 (406)
||+.-..-.++
T Consensus 375 WDlsvE~D~ee 385 (440)
T KOG0302|consen 375 WDLSVEADEEE 385 (440)
T ss_pred EEeeccCChhh
Confidence 99987765433
No 102
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=7.5e-26 Score=204.14 Aligned_cols=239 Identities=19% Similarity=0.249 Sum_probs=200.3
Q ss_pred EeecCCceeE-EEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 111 KIRVDGEVNR-ARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 111 ~~~h~~~v~~-i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
..+|.+-|.+ ++|.+..+-.+++|+.|+.|.+|.... ..|...+.+|...|.+++...++ .+++||.|.
T Consensus 53 ~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~--------~~P~~~LkgH~snVC~ls~~~~~--~~iSgSWD~ 122 (745)
T KOG0301|consen 53 FEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQ--------AEPLYTLKGHKSNVCSLSIGEDG--TLISGSWDS 122 (745)
T ss_pred cccCcceeeccceeccccCcceEeecccceEEEEecCC--------CCchhhhhccccceeeeecCCcC--ceEeccccc
Confidence 4457777777 888874434699999999999999987 67789999999999999877655 499999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~ 269 (406)
++++|..... ...+.+|...|++++.-| .+ .+++|+.|.+|++|.- ++.++++.+|...|+.+++-++
T Consensus 123 TakvW~~~~l--------~~~l~gH~asVWAv~~l~-e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~ 190 (745)
T KOG0301|consen 123 TAKVWRIGEL--------VYSLQGHTASVWAVASLP-EN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD 190 (745)
T ss_pred ceEEecchhh--------hcccCCcchheeeeeecC-CC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecC
Confidence 9999987653 244789999999999988 33 7789999999999975 7888999999999999999998
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCC
Q 015484 270 NEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (406)
+. |++++.||.|++|++. +.. +..+.+|+.-|.++...+.++ +++++++|++++||+..
T Consensus 191 ~~--flScsNDg~Ir~w~~~-ge~-l~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~---------------- 249 (745)
T KOG0301|consen 191 SH--FLSCSNDGSIRLWDLD-GEV-LLEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD---------------- 249 (745)
T ss_pred CC--eEeecCCceEEEEecc-Cce-eeeeeccceEEEEEEecCCCC-eEEEecCCceEEEeecC----------------
Confidence 76 8999999999999994 344 889999999999999776665 79999999999999976
Q ss_pred eeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 350 ELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 350 ~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
++...+.-....|+++.+-++|. +++|+.||.|+||.......
T Consensus 250 e~~q~I~lPttsiWsa~~L~NgD--Ivvg~SDG~VrVfT~~k~R~ 292 (745)
T KOG0301|consen 250 ECVQVITLPTTSIWSAKVLLNGD--IVVGGSDGRVRVFTVDKDRK 292 (745)
T ss_pred ceEEEEecCccceEEEEEeeCCC--EEEeccCceEEEEEeccccc
Confidence 33444443455799999999998 77888999999998875543
No 103
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=3.7e-26 Score=187.72 Aligned_cols=217 Identities=20% Similarity=0.351 Sum_probs=174.8
Q ss_pred ceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCc------------cCCceeeeeeeeeccCccEEEEEeeCC
Q 015484 159 DLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSAL------------AQDKVIDAMHVYEAHESVVEDVSWHLK 226 (406)
Q Consensus 159 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~------------~~~~~~~~~~~~~~~~~~i~~i~~~p~ 226 (406)
...+..|.+++.+.+|+++|. ++++|+.|..|+|+|++.. ......+.++++-.|..+|+++.|+|
T Consensus 105 t~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP- 182 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP- 182 (430)
T ss_pred eEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-
Confidence 456788999999999999999 9999999999999998831 11122245677778999999999999
Q ss_pred CCCEEEEEecCCcEEEEECCCCccccccc--ccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcE--EecCCC
Q 015484 227 NENLFGSAGDDCQLMIWDLRTNQTQQRVK--AHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLH--ILSSHT 302 (406)
Q Consensus 227 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~~h~ 302 (406)
...+|++++.|++|++||.......+.++ ....+|.+++|+|.|+ +|++|..-..+++||+.+.+.-+. .-..|+
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc-eEEEecCCCceeEEeccceeEeeecCcccccc
Confidence 68999999999999999987544333332 2457899999999999 899999889999999998654222 234689
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEe-cCC-CCCeeeEEeCCCCCcEEEEEeC
Q 015484 303 EEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH-GGH-KAKISDFSWNKNDPWVISSVAD 380 (406)
Q Consensus 303 ~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~h-~~~v~~~~~s~~~~~~l~s~~~ 380 (406)
+.|+++.+++.++ +.++++.||.|+|||--+.. ++.++ .+| ...|.+..|..+++| +.+.|.
T Consensus 262 ~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~r--------------Cv~t~~~AH~gsevcSa~Ftkn~ky-iLsSG~ 325 (430)
T KOG0640|consen 262 GAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNR--------------CVRTIGNAHGGSEVCSAVFTKNGKY-ILSSGK 325 (430)
T ss_pred cceeEEEecCCcc-EEEEeccCCcEEeeccccHH--------------HHHHHHhhcCCceeeeEEEccCCeE-EeecCC
Confidence 9999999999997 89999999999999976632 22222 233 346999999999996 667889
Q ss_pred CCcEEEEeCCCccc
Q 015484 381 DNTVQVWQMTDSIY 394 (406)
Q Consensus 381 dg~i~iw~~~~~~~ 394 (406)
|..+++|.+.++..
T Consensus 326 DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 326 DSTVKLWEISTGRM 339 (430)
T ss_pred cceeeeeeecCCce
Confidence 99999999998754
No 104
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=4.6e-27 Score=199.82 Aligned_cols=253 Identities=16% Similarity=0.227 Sum_probs=203.4
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
.-.|.+.|..+.|.++. ..|++|+.|..|++|+..... .....++.+..+.|+++.|.+++. .+++++.|+.
T Consensus 171 ld~h~gev~~v~~l~~s-dtlatgg~Dr~Ik~W~v~~~k------~~~~~tLaGs~g~it~~d~d~~~~-~~iAas~d~~ 242 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNS-DTLATGGSDRIIKLWNVLGEK------SELISTLAGSLGNITSIDFDSDNK-HVIAASNDKN 242 (459)
T ss_pred hhccccccceeEEccCc-chhhhcchhhhhhhhhcccch------hhhhhhhhccCCCcceeeecCCCc-eEEeecCCCc
Confidence 33589999999999986 579999999999999998743 344677888889999999999998 8889999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~ 270 (406)
+++|++...+. +.++.+|...|+++.|.. +...+++|+.|.+|++||+....+.+++. ..+.++.|..++
T Consensus 243 ~r~Wnvd~~r~------~~TLsGHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~~-- 312 (459)
T KOG0288|consen 243 LRLWNVDSLRL------RHTLSGHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCSI-- 312 (459)
T ss_pred eeeeeccchhh------hhhhcccccceeeehhhc-cccceeeccccchhhhhhhhhhheecccc-ccccccceEecc--
Confidence 99999988643 467788999999999986 44448899999999999999887776664 345566676662
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCe
Q 015484 271 EWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPE 350 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 350 (406)
. .+++|..|+.|++||.|.... ......+ +.|+++..++++.. +.+++.|.++.+.|+++.+-.... .
T Consensus 313 ~-~~~SgH~DkkvRfwD~Rs~~~-~~sv~~g-g~vtSl~ls~~g~~-lLsssRDdtl~viDlRt~eI~~~~--------s 380 (459)
T KOG0288|consen 313 S-DVISGHFDKKVRFWDIRSADK-TRSVPLG-GRVTSLDLSMDGLE-LLSSSRDDTLKVIDLRTKEIRQTF--------S 380 (459)
T ss_pred e-eeeecccccceEEEeccCCce-eeEeecC-cceeeEeeccCCeE-EeeecCCCceeeeecccccEEEEe--------e
Confidence 3 789999999999999998665 6666665 49999999999986 677799999999999983321110 0
Q ss_pred eEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCC
Q 015484 351 LLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRD 396 (406)
Q Consensus 351 ~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 396 (406)
......+| ..+.+.|||++.| +++|+.||.|+||++.++.++.
T Consensus 381 A~g~k~as--DwtrvvfSpd~~Y-vaAGS~dgsv~iW~v~tgKlE~ 423 (459)
T KOG0288|consen 381 AEGFKCAS--DWTRVVFSPDGSY-VAAGSADGSVYIWSVFTGKLEK 423 (459)
T ss_pred cccccccc--ccceeEECCCCce-eeeccCCCcEEEEEccCceEEE
Confidence 00111222 3889999999995 8999999999999999997754
No 105
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=4.2e-25 Score=200.95 Aligned_cols=303 Identities=13% Similarity=0.198 Sum_probs=231.5
Q ss_pred hHhhhhhcCCCCCCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCC
Q 015484 26 FLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPK 105 (406)
Q Consensus 26 ~ly~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (406)
..+..+-+..+..-.-+++|.|..... ..+++ . ..|.+...++... .+.. ++ ..+
T Consensus 309 ~~i~r~~~ir~~~kiks~dv~~~~~~~---------~~lv~-l-----~nNtv~~ysl~~s-~~~~----p~-----~~~ 363 (888)
T KOG0306|consen 309 DEIKRLETIRTSAKIKSFDVTPSGGTE---------NTLVL-L-----ANNTVEWYSLENS-GKTS----PE-----ADR 363 (888)
T ss_pred HHHHHHHheechhheeEEEEEecCCcc---------eeEEE-e-----ecCceEEEEeccC-CCCC----cc-----ccc
Confidence 355566666666667799999965433 23333 1 1255555566631 1110 00 123
Q ss_pred eEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEe
Q 015484 106 VEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSG 185 (406)
Q Consensus 106 ~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 185 (406)
.......+|...|..++++.+. .++++| ..+.|.||+..+ .+++.++.. ..+.+..|.|.+. ++++|
T Consensus 364 ~~~i~~~GHR~dVRsl~vS~d~-~~~~Sg-a~~SikiWn~~t--------~kciRTi~~--~y~l~~~Fvpgd~-~Iv~G 430 (888)
T KOG0306|consen 364 TSNIEIGGHRSDVRSLCVSSDS-ILLASG-AGESIKIWNRDT--------LKCIRTITC--GYILASKFVPGDR-YIVLG 430 (888)
T ss_pred cceeeeccchhheeEEEeecCc-eeeeec-CCCcEEEEEccC--------cceeEEecc--ccEEEEEecCCCc-eEEEe
Confidence 3445567899999999999987 456655 456799999987 344555543 4788999999777 99999
Q ss_pred cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC-----cccccc------
Q 015484 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN-----QTQQRV------ 254 (406)
Q Consensus 186 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~------ 254 (406)
...|.+.+||+.+... +.....|.+.|++++.+| ++..+++|+.|.+|++||..-. ...+.+
T Consensus 431 ~k~Gel~vfdlaS~~l------~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~r 503 (888)
T KOG0306|consen 431 TKNGELQVFDLASASL------VETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTR 503 (888)
T ss_pred ccCCceEEEEeehhhh------hhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccce
Confidence 9999999999987643 244568999999999999 6788889999999999997521 111111
Q ss_pred -cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 015484 255 -KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLN 333 (406)
Q Consensus 255 -~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~ 333 (406)
-.-...|.|++++|++. +||++--|.+++||-+.+.+- ...+.+|.-+|.++..+|++. +++|||.|..|+||-+.
T Consensus 504 tLel~ddvL~v~~Spdgk-~LaVsLLdnTVkVyflDtlKF-flsLYGHkLPV~smDIS~DSk-livTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 504 TLELEDDVLCVSVSPDGK-LLAVSLLDNTVKVYFLDTLKF-FLSLYGHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLD 580 (888)
T ss_pred EEeccccEEEEEEcCCCc-EEEEEeccCeEEEEEecceee-eeeecccccceeEEeccCCcC-eEEeccCCCceEEeccc
Confidence 12357899999999999 999999999999999998776 667899999999999999997 89999999999999988
Q ss_pred CCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 334 RIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
- ..+..++.+|...|.++.|.|... ++.++|.|+.|+-||-..
T Consensus 581 F--------------GDCHKS~fAHdDSvm~V~F~P~~~-~FFt~gKD~kvKqWDg~k 623 (888)
T KOG0306|consen 581 F--------------GDCHKSFFAHDDSVMSVQFLPKTH-LFFTCGKDGKVKQWDGEK 623 (888)
T ss_pred c--------------chhhhhhhcccCceeEEEEcccce-eEEEecCcceEEeechhh
Confidence 7 345556678999999999999776 788999999999997543
No 106
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=1.8e-25 Score=201.74 Aligned_cols=239 Identities=20% Similarity=0.279 Sum_probs=202.9
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeE-EEecCCCCCeEEEecCCC
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYG-LSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~l~s~~~dg 189 (406)
..+|...|..+++.+.. .+++++.||++++|+-... +......+.+|.+-|.. +++-+..+..|++|+.|+
T Consensus 10 l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~------~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGK------QYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred eccCccchheeEecCCe--EEeecCCCCceeeeeccCc------ccccceecccCcceeeccceeccccCcceEeecccc
Confidence 44799999999987755 6899999999999998763 45556778888887776 888765555799999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~ 269 (406)
+|.+|.+... .++..+.+|...|.++.... .+. +++|+.|.++++|-. +++...+.+|+..|.+++.-|.
T Consensus 82 ~i~v~~~~~~------~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e 151 (745)
T KOG0301|consen 82 TIIVFKLSQA------EPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPE 151 (745)
T ss_pred eEEEEecCCC------CchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCC
Confidence 9999998765 35678899999999998664 344 789999999999975 5566678999999999999987
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCC
Q 015484 270 NEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (406)
+ .++||+.|.+|++|.-. ..+.++.+|...|..+++-+++. +++++.||.|++|++..
T Consensus 152 ~--~~vTgsaDKtIklWk~~---~~l~tf~gHtD~VRgL~vl~~~~--flScsNDg~Ir~w~~~g--------------- 209 (745)
T KOG0301|consen 152 N--TYVTGSADKTIKLWKGG---TLLKTFSGHTDCVRGLAVLDDSH--FLSCSNDGSIRLWDLDG--------------- 209 (745)
T ss_pred C--cEEeccCcceeeeccCC---chhhhhccchhheeeeEEecCCC--eEeecCCceEEEEeccC---------------
Confidence 7 59999999999999763 34889999999999999999874 88999999999999964
Q ss_pred eeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 350 ELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 350 ~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
+.+..+.||++.|.+++..+++. +++|+|+|++++||+..
T Consensus 210 e~l~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 210 EVLLEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ceeeeeeccceEEEEEEecCCCC-eEEEecCCceEEEeecC
Confidence 77888899999999999777766 79999999999999976
No 107
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=2.5e-25 Score=191.70 Aligned_cols=262 Identities=20% Similarity=0.298 Sum_probs=202.5
Q ss_pred ecCCceeEEEEcCCCC-cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeE
Q 015484 113 RVDGEVNRARCMPQKP-NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKI 191 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 191 (406)
-|.+.|++++|+|..+ .++|+|...|+|-+||+..... ...-+..+..|..+|.++.|+|.+...+++.|.||+|
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~----d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK----DKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC----ccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence 4789999999999765 7999999999999999963222 2333667788999999999999988899999999999
Q ss_pred EEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc-cccccccCCCeeEEEecCCC
Q 015484 192 CLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT-QQRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 192 ~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~i~~~~~~ 270 (406)
++-|++...... +.........+.++.|+.. ...++.+..=|.+.+||+|++.. ...+..|...|++++++|..
T Consensus 260 R~~D~~~~i~e~----v~s~~~d~~~fs~~d~~~e-~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~ 334 (498)
T KOG4328|consen 260 RLQDFEGNISEE----VLSLDTDNIWFSSLDFSAE-SRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVC 334 (498)
T ss_pred eeeeecchhhHH----HhhcCccceeeeeccccCC-CccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCC
Confidence 999998854322 1222223456777888874 44455666667999999999776 55667788899999999999
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCC---CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCC
Q 015484 271 EWVLATASSDTTVALFDMRKMTV---PLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDG 347 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 347 (406)
+++||+++.|++++|||+|.... |+.....|...|.++.|+|.+.. |+|.+.|..|+|||..-.... +.
T Consensus 335 p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~-------~~ 406 (498)
T KOG4328|consen 335 PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAK-------DE 406 (498)
T ss_pred chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeeccccccc-------CC
Confidence 99999999999999999997542 44566789999999999999987 899999999999998521111 11
Q ss_pred CCeeEEEecC-CC--CCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 348 PPELLFSHGG-HK--AKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 348 ~~~~~~~~~~-h~--~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
+ .....+.. +. -......|.|+.. ++++|..-..|-|++-+.+.
T Consensus 407 p-~~~I~Hn~~t~RwlT~fKA~W~P~~~-li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 407 P-LGTIPHNNRTGRWLTPFKAAWDPDYN-LIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred c-cceeeccCcccccccchhheeCCCcc-EEEEeccCcceeEEcCCCCE
Confidence 1 11112211 11 1355678999888 78999888889999998886
No 108
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=6.2e-25 Score=189.47 Aligned_cols=247 Identities=16% Similarity=0.264 Sum_probs=198.6
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
.|...+.+++.+|++ .+||+|+.|..|.||+.++ ..++..+.+|.+.|.+++|-... +.|++++.|++|+
T Consensus 200 ~h~keil~~avS~Dg-kylatgg~d~~v~Iw~~~t--------~ehv~~~~ghr~~V~~L~fr~gt-~~lys~s~Drsvk 269 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDG-KYLATGGRDRHVQIWDCDT--------LEHVKVFKGHRGAVSSLAFRKGT-SELYSASADRSVK 269 (479)
T ss_pred cccceeEEEEEcCCC-cEEEecCCCceEEEecCcc--------cchhhcccccccceeeeeeecCc-cceeeeecCCceE
Confidence 899999999999999 6899999999999999998 56678899999999999998744 4899999999999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCc
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEW 272 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 272 (406)
+|+++.... +.++.+|...|.+|.-.. -.+.+.+|+.|+++++|++. .+....+.++.+.+-|++|-.+.
T Consensus 270 vw~~~~~s~------vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~~-- 339 (479)
T KOG0299|consen 270 VWSIDQLSY------VETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFINDE-- 339 (479)
T ss_pred EEehhHhHH------HHHHhCCccceeeechhc-ccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEeccc--
Confidence 999987432 355678999999998764 46666667799999999994 33344557788899999998655
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcEEe-cCC-----------CCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccc
Q 015484 273 VLATASSDTTVALFDMRKMTVPLHIL-SSH-----------TEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL 340 (406)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~-~~h-----------~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 340 (406)
.+++|+.+|.|.+|++.+.+. +.+. .+| ...|++++..|..+ ++++|+.+|.|++|-+...-.
T Consensus 340 HfvsGSdnG~IaLWs~~KKkp-lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g~r--- 414 (479)
T KOG0299|consen 340 HFVSGSDNGSIALWSLLKKKP-LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDGLR--- 414 (479)
T ss_pred ceeeccCCceEEEeeecccCc-eeEeeccccccCCccccccccceeeeEecccCc-eEEecCCCCceEEEEecCCcc---
Confidence 599999999999999987543 4332 222 23789999999886 899999999999999986322
Q ss_pred cccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 341 ELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 341 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
+..+++.+. -.+.|++++|+++|+++++..+..-.+-=|-....
T Consensus 415 -------~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~k~ 458 (479)
T KOG0299|consen 415 -------AINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCLKS 458 (479)
T ss_pred -------ccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeEeec
Confidence 234555554 56789999999999988888787777766655433
No 109
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=5e-27 Score=212.53 Aligned_cols=236 Identities=22% Similarity=0.357 Sum_probs=206.5
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
...|...|.++..-..+ ..+++|+.|-.+-+|.+.. ..+...+.+|..+|.++.|++... +|++|+.+|+
T Consensus 24 ~~~hsaav~~lk~~~s~-r~~~~Gg~~~k~~L~~i~k--------p~~i~S~~~hespIeSl~f~~~E~-Llaagsasgt 93 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSS-RSLVTGGEDEKVNLWAIGK--------PNAITSLTGHESPIESLTFDTSER-LLAAGSASGT 93 (825)
T ss_pred hhhhhhhhceeeeeccc-eeeccCCCceeeccccccC--------CchhheeeccCCcceeeecCcchh-hhcccccCCc
Confidence 44688999999885445 6899999999999999987 344667899999999999999887 9999999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~ 270 (406)
|++||++..+. ++++.+|...+.++.|+| -+.+++.|+.|+.+.+||++...+...+.+|...|.++.|+|+|
T Consensus 94 iK~wDleeAk~------vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~G 166 (825)
T KOG0267|consen 94 IKVWDLEEAKI------VRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDG 166 (825)
T ss_pred eeeeehhhhhh------hhhhhccccCcceeeecc-ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCC
Confidence 99999997643 356778999999999999 68888999999999999999989999999999999999999999
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCe
Q 015484 271 EWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPE 350 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 350 (406)
. +++.|+.|..++|||++.++. +..|..|.+.+..+.|+|.. .++++|+.|+++++||+++ .+
T Consensus 167 r-~v~~g~ed~tvki~d~~agk~-~~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dlet--------------fe 229 (825)
T KOG0267|consen 167 R-WVASGGEDNTVKIWDLTAGKL-SKEFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLET--------------FE 229 (825)
T ss_pred c-eeeccCCcceeeeeccccccc-ccccccccccccccccCchh-hhhccCCCCceeeeeccce--------------eE
Confidence 9 999999999999999998765 78899999999999999987 5899999999999999986 35
Q ss_pred eEEEecCCCCCeeeEEeCCCCCcEEEEEeCC
Q 015484 351 LLFSHGGHKAKISDFSWNKNDPWVISSVADD 381 (406)
Q Consensus 351 ~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~d 381 (406)
++-........|.+++|+|++. .+.+|..+
T Consensus 230 ~I~s~~~~~~~v~~~~fn~~~~-~~~~G~q~ 259 (825)
T KOG0267|consen 230 VISSGKPETDGVRSLAFNPDGK-IVLSGEQI 259 (825)
T ss_pred EeeccCCccCCceeeeecCCce-eeecCchh
Confidence 5555556677899999999998 57776544
No 110
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.4e-25 Score=207.20 Aligned_cols=218 Identities=17% Similarity=0.297 Sum_probs=169.8
Q ss_pred ee-CCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCc----------------------------cC----Cc-----
Q 015484 162 LK-GHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSAL----------------------------AQ----DK----- 203 (406)
Q Consensus 162 ~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~----------------------------~~----~~----- 203 (406)
+. .|.+.|+++.|+++|+ +||+|+.||.|+||.+... .. ..
T Consensus 262 ~~~ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred cccccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 44 7999999999999999 9999999999999987650 00 00
Q ss_pred -----------------eeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEe
Q 015484 204 -----------------VIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSF 266 (406)
Q Consensus 204 -----------------~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~ 266 (406)
.-+++..+.+|.+.|.+|.|+. +++|++++.|.+|++|++...+++..|. |...|+||+|
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaF 417 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAF 417 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEe
Confidence 0034466789999999999995 7888899999999999999999999986 9999999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC
Q 015484 267 NPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED 346 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 346 (406)
+|...++|++|+-||.|+||++...+. +.... -..-|++++|.|+|+ ..+.|+.+|.+++|+.....-.. ......
T Consensus 418 nPvDDryFiSGSLD~KvRiWsI~d~~V-v~W~D-l~~lITAvcy~PdGk-~avIGt~~G~C~fY~t~~lk~~~-~~~I~~ 493 (712)
T KOG0283|consen 418 NPVDDRYFISGSLDGKVRLWSISDKKV-VDWND-LRDLITAVCYSPDGK-GAVIGTFNGYCRFYDTEGLKLVS-DFHIRL 493 (712)
T ss_pred cccCCCcEeecccccceEEeecCcCee-Eeehh-hhhhheeEEeccCCc-eEEEEEeccEEEEEEccCCeEEE-eeeEee
Confidence 998888999999999999999987443 33333 348899999999998 58899999999999987622111 000000
Q ss_pred CCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 347 GPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 347 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
...+ . ..|. .|+.+.|.|..+.-++..+.|..|||+|..+.
T Consensus 494 ~~~K---k-~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~ 534 (712)
T KOG0283|consen 494 HNKK---K-KQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK 534 (712)
T ss_pred ccCc---c-ccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccch
Confidence 0000 0 1123 79999999876654556678999999999544
No 111
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.7e-25 Score=193.30 Aligned_cols=259 Identities=15% Similarity=0.253 Sum_probs=204.9
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
...+--+++|.+++-+|.| .+|+.|+..|.|++|.+.++ ..+..+.+|=..|+|+.|+.+|. +|+|||.|
T Consensus 75 ~q~~v~Pg~v~al~s~n~G-~~l~ag~i~g~lYlWelssG--------~LL~v~~aHYQ~ITcL~fs~dgs-~iiTgskD 144 (476)
T KOG0646|consen 75 VQYIVLPGPVHALASSNLG-YFLLAGTISGNLYLWELSSG--------ILLNVLSAHYQSITCLKFSDDGS-HIITGSKD 144 (476)
T ss_pred hhhcccccceeeeecCCCc-eEEEeecccCcEEEEEeccc--------cHHHHHHhhccceeEEEEeCCCc-EEEecCCC
Confidence 3566678999999999999 78888889999999999984 33666789999999999999999 99999999
Q ss_pred CeEEEEeCCCc---cCCceeeeeeeeeccCccEEEEEeeCC-CCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEE
Q 015484 189 NKICLWDVSAL---AQDKVIDAMHVYEAHESVVEDVSWHLK-NENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYL 264 (406)
Q Consensus 189 g~i~iwd~~~~---~~~~~~~~~~~~~~~~~~i~~i~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i 264 (406)
|.|.+|.+... .......++..+..|.-+|+++...+. ....+++++.|.++++||+..+..+.++. ....+.++
T Consensus 145 g~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av 223 (476)
T KOG0646|consen 145 GAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAV 223 (476)
T ss_pred ccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeE
Confidence 99999987542 111245677889999999999998763 35678899999999999999998887775 56789999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCC---------------CCcEEecCCCC--CeEEEEEcCCCCCEEEEEeCCCcE
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMRKMT---------------VPLHILSSHTE--EVFQVEWDPNHETVLASSADDRRL 327 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~---------------~~~~~~~~h~~--~v~~i~~~p~~~~~l~s~~~dg~i 327 (406)
+.+|-+. .+.+|+.+|.|.+.++.... ..+..+.+|.+ .|+|++.+-+|. +|++|+.||.|
T Consensus 224 ~lDpae~-~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~V 301 (476)
T KOG0646|consen 224 ALDPAER-VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKV 301 (476)
T ss_pred EEccccc-EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCE
Confidence 9999888 89999999999998876533 12456778888 999999999996 89999999999
Q ss_pred EEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 328 MVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 328 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
+|||+.+ .+++.+.....++|+.+.+.|-.+-.+..-.....+-.|++...+.
T Consensus 302 cvWdi~S--------------~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lkr~i~ 354 (476)
T KOG0646|consen 302 CVWDIYS--------------KQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLKRMIP 354 (476)
T ss_pred EEEecch--------------HHHHHHHhhhccccceeEeeccccceecccccCccCCchHhhccCC
Confidence 9999987 3444444434667888888665443333333344455555544433
No 112
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=9.1e-26 Score=179.48 Aligned_cols=213 Identities=23% Similarity=0.350 Sum_probs=175.0
Q ss_pred eeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEe-eCCCCCEEEEEecCCcE
Q 015484 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSW-HLKNENLFGSAGDDCQL 240 (406)
Q Consensus 162 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~-~p~~~~~l~~~~~dg~i 240 (406)
-..|.+.|..+...-.|. +|+|++.|++|+|+.++.... ...+..+.+|.++|..++| +|.-+.+||+++.||.|
T Consensus 7 dt~H~D~IHda~lDyygk-rlATcsSD~tVkIf~v~~n~~---s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkV 82 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGK-RLATCSSDGTVKIFEVRNNGQ---SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKV 82 (299)
T ss_pred hhhhhhhhhHhhhhhhcc-eeeeecCCccEEEEEEcCCCC---ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceE
Confidence 346888888887777788 999999999999999988654 2356788999999999999 56678999999999999
Q ss_pred EEEECCCCcc--cccccccCCCeeEEEecCCCC-cEEEEEeCCCcEEEEeCCCCC--CCcEEecCCCCCeEEEEEcCC--
Q 015484 241 MIWDLRTNQT--QQRVKAHEKEVNYLSFNPYNE-WVLATASSDTTVALFDMRKMT--VPLHILSSHTEEVFQVEWDPN-- 313 (406)
Q Consensus 241 ~i~d~~~~~~--~~~~~~~~~~v~~i~~~~~~~-~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~h~~~v~~i~~~p~-- 313 (406)
.||.-.+++- ......|...|++++|.|.+- .+|++++.||.|.|.+.+... ..-.....|.-.|++++|.|-
T Consensus 83 IiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~ 162 (299)
T KOG1332|consen 83 IIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA 162 (299)
T ss_pred EEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC
Confidence 9999888754 334477999999999999642 379999999999999988652 224456789999999999996
Q ss_pred -CC----------CEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCC---CcEEEEEe
Q 015484 314 -HE----------TVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKND---PWVISSVA 379 (406)
Q Consensus 314 -~~----------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~---~~~l~s~~ 379 (406)
|. +-|++|+.|..|+||+..... ..+-..+.+|.+.|.+++|.|.- +..|||++
T Consensus 163 ~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~------------w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S 230 (299)
T KOG1332|consen 163 PGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS------------WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS 230 (299)
T ss_pred CccccccCcccccceeeccCCccceeeeecCCcc------------hhhhhhhhhcchhhhhhhhccccCCCceeeEEec
Confidence 31 239999999999999998731 23334478999999999999964 34799999
Q ss_pred CCCcEEEEeCC
Q 015484 380 DDNTVQVWQMT 390 (406)
Q Consensus 380 ~dg~i~iw~~~ 390 (406)
.||.|.||...
T Consensus 231 qDg~viIwt~~ 241 (299)
T KOG1332|consen 231 QDGTVIIWTKD 241 (299)
T ss_pred CCCcEEEEEec
Confidence 99999999887
No 113
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.6e-23 Score=173.11 Aligned_cols=243 Identities=18% Similarity=0.234 Sum_probs=187.2
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeC--CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTS--SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
.++..|..++|..... .++.++. |.+|+..++.+ .+.+.-+.||...|.+|+.+|-+. .+++++.|++
T Consensus 54 skkyG~~~~~Fth~~~-~~i~sStk~d~tIryLsl~d--------NkylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~t 123 (311)
T KOG1446|consen 54 SKKYGVDLACFTHHSN-TVIHSSTKEDDTIRYLSLHD--------NKYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKT 123 (311)
T ss_pred cccccccEEEEecCCc-eEEEccCCCCCceEEEEeec--------CceEEEcCCCCceEEEEEecCCCC-eEEecccCCe
Confidence 4557788889887663 4444555 77899999988 355888999999999999999887 9999999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC--cccccc---cccCCCeeEEE
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN--QTQQRV---KAHEKEVNYLS 265 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~---~~~~~~v~~i~ 265 (406)
|++||++..++...+ . ...-..++|.| .+-+||++.....|++||+|.- .+..++ .......+.|.
T Consensus 124 vrLWDlR~~~cqg~l------~--~~~~pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~ 194 (311)
T KOG1446|consen 124 VRLWDLRVKKCQGLL------N--LSGRPIAAFDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLE 194 (311)
T ss_pred EEeeEecCCCCceEE------e--cCCCcceeECC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeE
Confidence 999999976543222 1 22334568999 6888888888779999999974 233333 23467789999
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCe---EEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccc
Q 015484 266 FNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEV---FQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLEL 342 (406)
Q Consensus 266 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v---~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 342 (406)
|+|+|+ +++.++..+.+++.|.-.+.. +..+..+...- ...+|.|+++ ++++|+.||+|.+|++++
T Consensus 195 FS~dGK-~iLlsT~~s~~~~lDAf~G~~-~~tfs~~~~~~~~~~~a~ftPds~-Fvl~gs~dg~i~vw~~~t-------- 263 (311)
T KOG1446|consen 195 FSPDGK-SILLSTNASFIYLLDAFDGTV-KSTFSGYPNAGNLPLSATFTPDSK-FVLSGSDDGTIHVWNLET-------- 263 (311)
T ss_pred EcCCCC-EEEEEeCCCcEEEEEccCCcE-eeeEeeccCCCCcceeEEECCCCc-EEEEecCCCcEEEEEcCC--------
Confidence 999999 777777888999999888764 66666655432 6789999997 699999999999999977
Q ss_pred cccCCCCeeEEEecC-CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 343 DAEDGPPELLFSHGG-HKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 343 ~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
...+....+ +..++.++.|+|... +++|+ +..+.+|-+....+
T Consensus 264 ------g~~v~~~~~~~~~~~~~~~fnP~~~-mf~sa--~s~l~fw~p~~~~~ 307 (311)
T KOG1446|consen 264 ------GKKVAVLRGPNGGPVSCVRFNPRYA-MFVSA--SSNLVFWLPDEDAL 307 (311)
T ss_pred ------CcEeeEecCCCCCCccccccCCcee-eeeec--CceEEEEecccccc
Confidence 234444455 688899999999876 56665 56899997765443
No 114
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.5e-24 Score=178.92 Aligned_cols=273 Identities=16% Similarity=0.235 Sum_probs=195.6
Q ss_pred EEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec
Q 015484 107 EIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS 186 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 186 (406)
......+|.+.|++++|+.+| ..||+++.|+.|+||++.+-........+.. -.-+..+.+.|.|+-+..+++.-
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdG-K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n----ve~dhpT~V~FapDc~s~vv~~~ 152 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDG-KKLATISGDRSIRLWDVRDFENKEHRCIRQN----VEYDHPTRVVFAPDCKSVVVSVK 152 (420)
T ss_pred hhhhhhccCCceeeeEEcCCC-ceeEEEeCCceEEEEecchhhhhhhhHhhcc----ccCCCceEEEECCCcceEEEEEc
Confidence 344456899999999999999 5899999999999999987433221111111 11134578999999887888888
Q ss_pred CCCeEEEEeCCCccCCce-e-----eeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCC
Q 015484 187 HDNKICLWDVSALAQDKV-I-----DAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKE 260 (406)
Q Consensus 187 ~dg~i~iwd~~~~~~~~~-~-----~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 260 (406)
...++++|.+........ + .....-..|...+.++-... +..++++++.|..|.+|+++ |+.+..+......
T Consensus 153 ~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~ 230 (420)
T KOG2096|consen 153 RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS 230 (420)
T ss_pred cCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cceeeeecccccc
Confidence 888999998866433211 1 11112234566666666653 78899999999999999999 8888888777777
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC-------CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 015484 261 VNYLSFNPYNEWVLATASSDTTVALFDMRKMT-------VPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLN 333 (406)
Q Consensus 261 v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~ 333 (406)
-+..+.+|+|+ ++++++-.-.|++|.+--.+ ..+..+++|+..|..++|+|+... ++|.+.||+++|||+.
T Consensus 231 n~~aavSP~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r-~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 231 NYDAAVSPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTR-AVTVSKDGKWRIWDTD 308 (420)
T ss_pred ccceeeCCCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcce-eEEEecCCcEEEeecc
Confidence 88889999999 88888888899999863221 236678999999999999999975 9999999999999986
Q ss_pred CCCcc---ccccc--------ccCCCCeeEEE----------------------------ecCCCCCeeeEEeCCCCCcE
Q 015484 334 RIGDE---QLELD--------AEDGPPELLFS----------------------------HGGHKAKISDFSWNKNDPWV 374 (406)
Q Consensus 334 ~~~~~---~~~~~--------~~~~~~~~~~~----------------------------~~~h~~~v~~~~~s~~~~~~ 374 (406)
-..+. ...+. ....|.++... -..|...|.+++|+++|+ .
T Consensus 309 VrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~-~ 387 (420)
T KOG2096|consen 309 VRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGK-Y 387 (420)
T ss_pred ceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCc-E
Confidence 52211 00000 00001111000 024778899999999999 4
Q ss_pred EEEEeCCCcEEEEeCC
Q 015484 375 ISSVADDNTVQVWQMT 390 (406)
Q Consensus 375 l~s~~~dg~i~iw~~~ 390 (406)
++++| |..+++..-.
T Consensus 388 ~atcG-dr~vrv~~nt 402 (420)
T KOG2096|consen 388 IATCG-DRYVRVIRNT 402 (420)
T ss_pred Eeeec-ceeeeeecCC
Confidence 77877 7888888633
No 115
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.2e-24 Score=195.78 Aligned_cols=236 Identities=21% Similarity=0.383 Sum_probs=190.4
Q ss_pred eEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCC
Q 015484 119 NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSA 198 (406)
Q Consensus 119 ~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~ 198 (406)
+-+.|+..+ .||+|.. ..|++|+...... ......+...|+++.|+++|. +|++|..+|.|.|||..+
T Consensus 181 nlldWss~n--~laValg-~~vylW~~~s~~v--------~~l~~~~~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~ 248 (484)
T KOG0305|consen 181 NLLDWSSAN--VLAVALG-QSVYLWSASSGSV--------TELCSFGEELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKE 248 (484)
T ss_pred hHhhcccCC--eEEEEec-ceEEEEecCCCce--------EEeEecCCCceEEEEECCCCC-EEEEeecCCeEEEEehhh
Confidence 346677544 6777754 4599999988421 222223378999999999999 999999999999999987
Q ss_pred ccCCceeeeeeeeec-cCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccc-ccccCCCeeEEEecCCCCcEEEE
Q 015484 199 LAQDKVIDAMHVYEA-HESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQR-VKAHEKEVNYLSFNPYNEWVLAT 276 (406)
Q Consensus 199 ~~~~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~l~~ 276 (406)
.+.. ..+.. |...|.+++|+ ...+.+|+.+|.|..+|++..+.... +.+|...|..++|++++. +||+
T Consensus 249 ~k~~------~~~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~-~lAS 318 (484)
T KOG0305|consen 249 QKKT------RTLRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGN-QLAS 318 (484)
T ss_pred cccc------ccccCCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCC-eecc
Confidence 6543 33345 89999999997 67888999999999999999877555 788999999999999999 9999
Q ss_pred EeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEe--CCCcEEEEeCCCCCcccccccccCCCCeeEEE
Q 015484 277 ASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSA--DDRRLMVWDLNRIGDEQLELDAEDGPPELLFS 354 (406)
Q Consensus 277 ~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 354 (406)
|+.|+.+.|||... ..++..+..|...|..++|+|..+.+||+|+ .|++|++||..+. ..+..
T Consensus 319 GgnDN~~~Iwd~~~-~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g--------------~~i~~ 383 (484)
T KOG0305|consen 319 GGNDNVVFIWDGLS-PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG--------------ARIDS 383 (484)
T ss_pred CCCccceEeccCCC-ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC--------------cEecc
Confidence 99999999999965 4568899999999999999999888999975 6999999999862 23332
Q ss_pred ecCCCCCeeeEEeCCCCCcEEEEE-eCCCcEEEEeCCCc
Q 015484 355 HGGHKAKISDFSWNKNDPWVISSV-ADDNTVQVWQMTDS 392 (406)
Q Consensus 355 ~~~h~~~v~~~~~s~~~~~~l~s~-~~dg~i~iw~~~~~ 392 (406)
.. -...|.+|.|++..+-++.+- -.++.|.||++.+-
T Consensus 384 vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~ 421 (484)
T KOG0305|consen 384 VD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM 421 (484)
T ss_pred cc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc
Confidence 22 346799999999986444443 35678999999773
No 116
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.94 E-value=3.7e-24 Score=179.59 Aligned_cols=206 Identities=20% Similarity=0.335 Sum_probs=170.6
Q ss_pred EEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec
Q 015484 107 EIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS 186 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 186 (406)
......+|+..|+++.|+.++ .+||||..+|.|+||+..+... ...+...-..+.-+.|+|.+. .|++|+
T Consensus 98 ~~~eltgHKDSVt~~~Fshdg-tlLATGdmsG~v~v~~~stg~~--------~~~~~~e~~dieWl~WHp~a~-illAG~ 167 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDG-TLLATGDMSGKVLVFKVSTGGE--------QWKLDQEVEDIEWLKWHPRAH-ILLAGS 167 (399)
T ss_pred ceeEecCCCCceEEEEEccCc-eEEEecCCCccEEEEEcccCce--------EEEeecccCceEEEEeccccc-EEEeec
Confidence 445677999999999999999 6999999999999999998433 444545556788899999877 999999
Q ss_pred CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccc-----------
Q 015484 187 HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK----------- 255 (406)
Q Consensus 187 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------- 255 (406)
.||.+.+|.+.+... .+.+.+|..++++-.|.| +++.++++..||+|++|++.++.++..+.
T Consensus 168 ~DGsvWmw~ip~~~~------~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~ 240 (399)
T KOG0296|consen 168 TDGSVWMWQIPSQAL------CKVMSGHNSPCTCGEFIP-DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCIS 240 (399)
T ss_pred CCCcEEEEECCCcce------eeEecCCCCCcccccccC-CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccc
Confidence 999999999988532 366788999999999999 58888899999999999998665432221
Q ss_pred --------------------------------------------------------------------------------
Q 015484 256 -------------------------------------------------------------------------------- 255 (406)
Q Consensus 256 -------------------------------------------------------------------------------- 255 (406)
T Consensus 241 ~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~ 320 (399)
T KOG0296|consen 241 LNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL 320 (399)
T ss_pred cccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh
Confidence
Q ss_pred ----ccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 015484 256 ----AHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWD 331 (406)
Q Consensus 256 ----~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd 331 (406)
.|...|..+.|-+ .. +|++++.+|.|+.||.|++.. +..+.+|...|.+++++|+.+ +++|+|.|++.+||+
T Consensus 321 R~~c~he~~V~~l~w~~-t~-~l~t~c~~g~v~~wDaRtG~l-~~~y~GH~~~Il~f~ls~~~~-~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 321 RHICEHEDGVTKLKWLN-TD-YLLTACANGKVRQWDARTGQL-KFTYTGHQMGILDFALSPQKR-LVVTVSDDNTALVFE 396 (399)
T ss_pred heeccCCCceEEEEEcC-cc-hheeeccCceEEeeeccccce-EEEEecCchheeEEEEcCCCc-EEEEecCCCeEEEEe
Confidence 1334466666666 34 788889999999999999776 889999999999999999997 799999999999998
Q ss_pred CC
Q 015484 332 LN 333 (406)
Q Consensus 332 ~~ 333 (406)
..
T Consensus 397 v~ 398 (399)
T KOG0296|consen 397 VP 398 (399)
T ss_pred cC
Confidence 64
No 117
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=2e-25 Score=194.99 Aligned_cols=217 Identities=18% Similarity=0.321 Sum_probs=169.1
Q ss_pred ceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCC-ceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC
Q 015484 159 DLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD 237 (406)
Q Consensus 159 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d 237 (406)
...+++|+..|.++++.|.|. .|++|+.|.+|++||+...... +.++.+. ......|++++|++. +..|++.+..
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~Ga-R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~--P~E~h~i~sl~ys~T-g~~iLvvsg~ 235 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGA-RFVSGSLDYTVKFWDFQGMDASMRSFRQLQ--PCETHQINSLQYSVT-GDQILVVSGS 235 (641)
T ss_pred eEeccCCceEEEEeeecCCCc-eeeeccccceEEEEecccccccchhhhccC--cccccccceeeecCC-CCeEEEEecC
Confidence 456889999999999999999 9999999999999999865422 1122111 234457999999995 5555566667
Q ss_pred CcEEEEECCCCcccc------------cccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec-----C
Q 015484 238 CQLMIWDLRTNQTQQ------------RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILS-----S 300 (406)
Q Consensus 238 g~i~i~d~~~~~~~~------------~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~ 300 (406)
...+++|-....... .-++|...++|.+|+|.....+++++.||++++||+.+.+..+..+. +
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g 315 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG 315 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence 789999955332211 22678899999999999988999999999999999988765444443 2
Q ss_pred CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCC--CeeeEEeCCCCCcEEEEE
Q 015484 301 HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKA--KISDFSWNKNDPWVISSV 378 (406)
Q Consensus 301 h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~s~~~~~~l~s~ 378 (406)
..-+++.++|+|+++ +||+|+.||.|.+|+...... ........+|.. .|++|.||++|+ .|+|-
T Consensus 316 ~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v-----------~p~~~vk~AH~~g~~Itsi~FS~dg~-~LlSR 382 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTV-----------RPVMKVKDAHLPGQDITSISFSYDGN-YLLSR 382 (641)
T ss_pred cccCceeeecCCCcc-hhhhcccCCceeeeecCCccc-----------ccceEeeeccCCCCceeEEEeccccc-hhhhc
Confidence 334789999999998 599999999999999866332 233444567776 899999999999 58899
Q ss_pred eCCCcEEEEeCCCc
Q 015484 379 ADDNTVQVWQMTDS 392 (406)
Q Consensus 379 ~~dg~i~iw~~~~~ 392 (406)
|.|+++++||+..-
T Consensus 383 g~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 383 GFDDTLKVWDLRQF 396 (641)
T ss_pred cCCCceeeeecccc
Confidence 99999999999753
No 118
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=8.2e-26 Score=180.33 Aligned_cols=205 Identities=19% Similarity=0.270 Sum_probs=175.4
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
...+.|..-|..++|+.+. +.|++|+.+..++|||++.. --|...+.+|.+.|..+-|..... .|++++.|
T Consensus 94 lhsf~hkhivk~~af~~ds-~~lltgg~ekllrvfdln~p-------~App~E~~ghtg~Ir~v~wc~eD~-~iLSSadd 164 (334)
T KOG0278|consen 94 LHSFEHKHIVKAVAFSQDS-NYLLTGGQEKLLRVFDLNRP-------KAPPKEISGHTGGIRTVLWCHEDK-CILSSADD 164 (334)
T ss_pred hhhhhhhheeeeEEecccc-hhhhccchHHHhhhhhccCC-------CCCchhhcCCCCcceeEEEeccCc-eEEeeccC
Confidence 4577899999999999988 67999999999999999984 344677889999999999999777 88888999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
++|++||.+++.....+ . .+.+|+++..++ +++++ +....+.|.+||..+...++.++ ..-.|.+.+.+|
T Consensus 165 ~tVRLWD~rTgt~v~sL------~-~~s~VtSlEvs~-dG~il-Tia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P 234 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSL------E-FNSPVTSLEVSQ-DGRIL-TIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHP 234 (334)
T ss_pred CceEEEEeccCcEEEEE------e-cCCCCcceeecc-CCCEE-EEecCceeEEeccccccceeecc-CccccccccccC
Confidence 99999999998643222 2 467899999997 66766 66677889999999988888776 355688999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEE-ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHI-LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI 335 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~ 335 (406)
+.. .+++|+.|..++.||..++.. +.. .++|.++|.|+.|+|+|. +.++|++||+|+||.....
T Consensus 235 ~k~-~fVaGged~~~~kfDy~TgeE-i~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 235 KKE-FFVAGGEDFKVYKFDYNTGEE-IGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred CCc-eEEecCcceEEEEEeccCCce-eeecccCCCCceEEEEECCCCc-eeeccCCCceEEEEEecCC
Confidence 987 999999999999999999877 444 489999999999999998 7999999999999998763
No 119
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.94 E-value=4.9e-24 Score=197.32 Aligned_cols=277 Identities=18% Similarity=0.259 Sum_probs=211.6
Q ss_pred eEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCC-CeEEE
Q 015484 106 VEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKE-GYLVS 184 (406)
Q Consensus 106 ~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s 184 (406)
......+.-..+|.|+.|+|..++++|.|..+|.|.+||+......+. .........|..+++.+.|..+.. .-+++
T Consensus 233 ~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~--s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s 310 (555)
T KOG1587|consen 233 NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP--SGLSALEVSHSEPVTAVVWLQNEHNTEFFS 310 (555)
T ss_pred CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC--cccccccccCCcCeEEEEEeccCCCCceEE
Confidence 444556677899999999999999999999999999999998654221 111223346889999999987543 24889
Q ss_pred ecCCCeEEEEeCCCccCCceeeeeeeee------ccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc--------
Q 015484 185 GSHDNKICLWDVSALAQDKVIDAMHVYE------AHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT-------- 250 (406)
Q Consensus 185 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-------- 250 (406)
++.||.|+.|+++............... .....+++++|.+.+...|+.|+.+|.|.--+-...+.
T Consensus 311 ~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~ 390 (555)
T KOG1587|consen 311 LSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKG 390 (555)
T ss_pred EecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccc
Confidence 9999999999887643321111111111 22356899999999999999999999998744332221
Q ss_pred cccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEE
Q 015484 251 QQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVW 330 (406)
Q Consensus 251 ~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iw 330 (406)
...+..|.++|+++.++|.+..++++++ |.+++||.......|+..+..+...|++++|||..+.+++++..||.|.||
T Consensus 391 ~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iW 469 (555)
T KOG1587|consen 391 HSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIW 469 (555)
T ss_pred cccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehh
Confidence 2244668899999999999996677666 899999998866778888888888999999999999999999999999999
Q ss_pred eCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCCCc
Q 015484 331 DLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDDD 398 (406)
Q Consensus 331 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 398 (406)
|+..... .++....-+....+.+.|++.|+ +|++|...|.+++|++.........
T Consensus 470 DLl~~~~------------~Pv~s~~~~~~~l~~~~~s~~g~-~lavGd~~G~~~~~~l~~~l~~~~~ 524 (555)
T KOG1587|consen 470 DLLQDDE------------EPVLSQKVCSPALTRVRWSPNGK-LLAVGDANGTTHILKLSESLAVPSP 524 (555)
T ss_pred hhhcccc------------CCcccccccccccceeecCCCCc-EEEEecCCCcEEEEEcCchhhccCc
Confidence 9986332 23333333456678889999999 8999999999999999888765544
No 120
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1e-23 Score=166.13 Aligned_cols=220 Identities=23% Similarity=0.401 Sum_probs=175.9
Q ss_pred CeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccc--------------------------------
Q 015484 105 KVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQ-------------------------------- 152 (406)
Q Consensus 105 ~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~-------------------------------- 152 (406)
.....+...|.+.|.|.+|+|.| .+||+|+.|.+|++.-++......
T Consensus 79 ~v~~kr~khhkgsiyc~~ws~~g-eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s 157 (350)
T KOG0641|consen 79 SVLCKRNKHHKGSIYCTAWSPCG-ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILAS 157 (350)
T ss_pred eEEeeeccccCccEEEEEecCcc-CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEe
Confidence 45555566689999999999999 699999999999987665432211
Q ss_pred ------------cCCCCCceeeeCCCCCeeEE-EecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeec---cCc
Q 015484 153 ------------QDDCDPDLRLKGHDKEGYGL-SWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEA---HES 216 (406)
Q Consensus 153 ------------~~~~~~~~~~~~h~~~v~~l-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~ 216 (406)
-+...+...+.+|++.|.++ .|+ +. .+++|+.|.+|++||++-......+. ..+.. ..+
T Consensus 158 ~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn--~~-m~~sgsqdktirfwdlrv~~~v~~l~--~~~~~~gless 232 (350)
T KOG0641|consen 158 AGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWN--GA-MFASGSQDKTIRFWDLRVNSCVNTLD--NDFHDGGLESS 232 (350)
T ss_pred cCCCcceEEEeecCCCCcceeecCCcccEEEEEEec--Cc-EEEccCCCceEEEEeeeccceeeecc--CcccCCCcccc
Confidence 02344566677788777766 454 55 89999999999999998765433332 11221 236
Q ss_pred cEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCC---CC
Q 015484 217 VVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKM---TV 293 (406)
Q Consensus 217 ~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~ 293 (406)
.|.+++..| .++++++|-.|....+||++.++.++.+..|...|.|+.|+|... ++++++.|..|++-|+... +.
T Consensus 233 avaav~vdp-sgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~-yllt~syd~~ikltdlqgdla~el 310 (350)
T KOG0641|consen 233 AVAAVAVDP-SGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAH-YLLTCSYDMKIKLTDLQGDLAHEL 310 (350)
T ss_pred eeEEEEECC-CcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCce-EEEEecccceEEEeecccchhhcC
Confidence 799999999 799999999999999999999999999999999999999999766 9999999999999998742 34
Q ss_pred CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 015484 294 PLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLN 333 (406)
Q Consensus 294 ~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~ 333 (406)
++.....|+..+..+.|+|..- -+++.+.|.++.+|-+.
T Consensus 311 ~~~vv~ehkdk~i~~rwh~~d~-sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 311 PIMVVAEHKDKAIQCRWHPQDF-SFISSSADKTATLWALN 349 (350)
T ss_pred ceEEEEeccCceEEEEecCccc-eeeeccCcceEEEeccC
Confidence 5667778999999999999985 48899999999999764
No 121
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=9.9e-24 Score=196.23 Aligned_cols=245 Identities=18% Similarity=0.318 Sum_probs=198.9
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
++.|....+.|+|.|+| .+|.+++.||.|++|+.......+ .++..+...|.+++-. .. +|++|+.+++
T Consensus 9 Ryaht~G~t~i~~d~~g-efi~tcgsdg~ir~~~~~sd~e~P-------~ti~~~g~~v~~ia~~--s~-~f~~~s~~~t 77 (933)
T KOG1274|consen 9 RYAHTGGLTLICYDPDG-EFICTCGSDGDIRKWKTNSDEEEP-------ETIDISGELVSSIACY--SN-HFLTGSEQNT 77 (933)
T ss_pred hhhccCceEEEEEcCCC-CEEEEecCCCceEEeecCCcccCC-------chhhccCceeEEEeec--cc-ceEEeeccce
Confidence 46899999999999999 589999999999999988753221 1222277788888764 33 8999999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~ 270 (406)
|.+|.+..+..... +....-++++++|+- ++.++|.|+.|-.|++.++........+.+|..+|.++.|+|.+
T Consensus 78 v~~y~fps~~~~~i------L~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~ 150 (933)
T KOG1274|consen 78 VLRYKFPSGEEDTI------LARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKG 150 (933)
T ss_pred EEEeeCCCCCccce------eeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCC
Confidence 99999988765432 233567899999996 78999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCcEEec-------CC-CCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccc
Q 015484 271 EWVLATASSDTTVALFDMRKMTVPLHILS-------SH-TEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLEL 342 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------~h-~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 342 (406)
. +||+.+.||.|++||+.++.. ..++. .- ...+..++|+|++.. ++..+.|+.|++|+....
T Consensus 151 ~-fLAvss~dG~v~iw~~~~~~~-~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~-la~~~~d~~Vkvy~r~~w------- 220 (933)
T KOG1274|consen 151 N-FLAVSSCDGKVQIWDLQDGIL-SKTLTGVDKDNEFILSRICTRLAWHPKGGT-LAVPPVDNTVKVYSRKGW------- 220 (933)
T ss_pred C-EEEEEecCceEEEEEcccchh-hhhcccCCccccccccceeeeeeecCCCCe-EEeeccCCeEEEEccCCc-------
Confidence 9 999999999999999997653 22221 11 456788999999876 677777999999998873
Q ss_pred cccCCCCeeEEEe--cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 343 DAEDGPPELLFSH--GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 343 ~~~~~~~~~~~~~--~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
...+.+ ..+...+.++.|+|+|.| ||+++.||.|.|||+.+
T Consensus 221 -------e~~f~Lr~~~~ss~~~~~~wsPnG~Y-iAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 221 -------ELQFKLRDKLSSSKFSDLQWSPNGKY-IAASTLDGQILVWNVDT 263 (933)
T ss_pred -------eeheeecccccccceEEEEEcCCCcE-EeeeccCCcEEEEeccc
Confidence 333333 234445999999999995 89999999999999997
No 122
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5e-25 Score=197.46 Aligned_cols=254 Identities=20% Similarity=0.279 Sum_probs=204.8
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEe-cCCCCCeEEEecCCCe
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSW-SPFKEGYLVSGSHDNK 190 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~~~~l~s~~~dg~ 190 (406)
-.|..-|+.+..+.++ ..|++++.|-+|++|+..... .-...++..|...|.|++. -++.. .+|+|+-|+.
T Consensus 70 e~HsDWVNDiiL~~~~-~tlIS~SsDtTVK~W~~~~~~------~~c~stir~H~DYVkcla~~ak~~~-lvaSgGLD~~ 141 (735)
T KOG0308|consen 70 EHHSDWVNDIILCGNG-KTLISASSDTTVKVWNAHKDN------TFCMSTIRTHKDYVKCLAYIAKNNE-LVASGGLDRK 141 (735)
T ss_pred hhhHhHHhhHHhhcCC-CceEEecCCceEEEeecccCc------chhHhhhhcccchheeeeecccCce-eEEecCCCcc
Confidence 3588999999999988 468999999999999998742 2346778899999999999 55555 9999999999
Q ss_pred EEEEeCCCccC-----CceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEE
Q 015484 191 ICLWDVSALAQ-----DKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLS 265 (406)
Q Consensus 191 i~iwd~~~~~~-----~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~ 265 (406)
|.+||++++.. ...+..-....++...|.+++.++ .+.+|++|+..+.|++||.++.+.+..+.+|...|..+.
T Consensus 142 IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll 220 (735)
T KOG0308|consen 142 IFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLL 220 (735)
T ss_pred EEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccceEEeccccccceeeeeccccceEEEE
Confidence 99999997632 111111112227888999999997 678999999999999999999999999999999999999
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccccccc
Q 015484 266 FNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAE 345 (406)
Q Consensus 266 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 345 (406)
.+++|. .+++++.||+|++||++...+ +.++..|...|.++..+|.-. .+.+|+.||.|..=|+++..+
T Consensus 221 ~~dDGt-~~ls~sSDgtIrlWdLgqQrC-l~T~~vH~e~VWaL~~~~sf~-~vYsG~rd~~i~~Tdl~n~~~-------- 289 (735)
T KOG0308|consen 221 VNDDGT-RLLSASSDGTIRLWDLGQQRC-LATYIVHKEGVWALQSSPSFT-HVYSGGRDGNIYRTDLRNPAK-------- 289 (735)
T ss_pred EcCCCC-eEeecCCCceEEeeeccccce-eeeEEeccCceEEEeeCCCcc-eEEecCCCCcEEecccCCchh--------
Confidence 999999 899999999999999998665 888999999999999999987 599999999999999987321
Q ss_pred CCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 346 DGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 346 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
..+++. ...+|..+..+..... +-+++.|+.|+-|...-.
T Consensus 290 ---~tlick---~daPv~~l~~~~~~~~-~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 290 ---STLICK---EDAPVLKLHLHEHDNS-VWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred ---heEeec---CCCchhhhhhccccCC-ceeeeccccceecCCccc
Confidence 122322 2345677776644332 245567888888876544
No 123
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.4e-23 Score=170.69 Aligned_cols=253 Identities=16% Similarity=0.185 Sum_probs=191.8
Q ss_pred CeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCC
Q 015484 76 NFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDD 155 (406)
Q Consensus 76 n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 155 (406)
|.|.+|.++-. +.+..+....|.++|.+++|+.+| ..+++|+.|+.+++||+.+.
T Consensus 50 ~tVR~wevq~~-----------------g~~~~ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL~S~------- 104 (347)
T KOG0647|consen 50 GTVRIWEVQNS-----------------GQLVPKAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDLASG------- 104 (347)
T ss_pred CceEEEEEecC-----------------CcccchhhhccCCCeEEEEEccCC-ceEEeeccCCceEEEEccCC-------
Confidence 77888877722 122234466899999999999999 67999999999999999984
Q ss_pred CCCceeeeCCCCCeeEEEecCCCC-CeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEE
Q 015484 156 CDPDLRLKGHDKEGYGLSWSPFKE-GYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSA 234 (406)
Q Consensus 156 ~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~ 234 (406)
....+..|.++|.++.|-+... ..|+|||.|.+|+.||.+..... ..+. -...+.++..- ..+++++
T Consensus 105 --Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv------~t~~-LPeRvYa~Dv~---~pm~vVa 172 (347)
T KOG0647|consen 105 --QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPV------ATLQ-LPERVYAADVL---YPMAVVA 172 (347)
T ss_pred --CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCee------eeee-ccceeeehhcc---CceeEEE
Confidence 2566788999999999987432 37999999999999999875432 2222 24556666543 5677888
Q ss_pred ecCCcEEEEECCCCccccc-c-cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC-CCcEEecCCCC--------
Q 015484 235 GDDCQLMIWDLRTNQTQQR-V-KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT-VPLHILSSHTE-------- 303 (406)
Q Consensus 235 ~~dg~i~i~d~~~~~~~~~-~-~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~h~~-------- 303 (406)
..++.|.+|+++.+..... + ...+-.++||+..++.+ ..|.|+-.|.+.+..+..+. ..-..++.|..
T Consensus 173 ta~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~-~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~V 251 (347)
T KOG0647|consen 173 TAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKD-GFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDV 251 (347)
T ss_pred ecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCC-ceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCce
Confidence 8999999999987644322 2 23456789999998888 56899999999998887642 22345555652
Q ss_pred -CeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCC
Q 015484 304 -EVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADD 381 (406)
Q Consensus 304 -~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~d 381 (406)
.|++|+|+|... .|+|++.||++.+||-.. ...+.....|..+|++.+|+.+|..+..+.|.|
T Consensus 252 YaVNsi~FhP~hg-tlvTaGsDGtf~FWDkda--------------r~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 252 YAVNSIAFHPVHG-TLVTAGSDGTFSFWDKDA--------------RTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred EEecceEeecccc-eEEEecCCceEEEecchh--------------hhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 588999999887 599999999999999876 234455567889999999999999666666655
No 124
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=6.1e-24 Score=171.26 Aligned_cols=210 Identities=17% Similarity=0.303 Sum_probs=181.2
Q ss_pred eeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCc
Q 015484 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQ 239 (406)
Q Consensus 160 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~ 239 (406)
..+++|..+++.|.++.+|. +|++++.|.+..+|--.++. .+.++.+|.+.|+|+..+. ..+.+++|+.|.+
T Consensus 4 i~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGe------rlGty~GHtGavW~~Did~-~s~~liTGSAD~t 75 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGE------RLGTYDGHTGAVWCCDIDW-DSKHLITGSADQT 75 (327)
T ss_pred cccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCc------eeeeecCCCceEEEEEecC-Ccceeeeccccce
Confidence 45789999999999999999 99999999999999876664 2477899999999999986 6788889999999
Q ss_pred EEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeC-----CCcEEEEeCCCC------CCCcEEecCCCCCeEEE
Q 015484 240 LMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS-----DTTVALFDMRKM------TVPLHILSSHTEEVFQV 308 (406)
Q Consensus 240 i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-----dg~i~vwd~~~~------~~~~~~~~~h~~~v~~i 308 (406)
+++||+.+|+++..++ ...+|..+.|++.|. +++.... .+.|.++|++.. +.|+..+..+...++.+
T Consensus 76 ~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn-~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a 153 (327)
T KOG0643|consen 76 AKLWDVETGKQLATWK-TNSPVKRVDFSFGGN-LILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSA 153 (327)
T ss_pred eEEEEcCCCcEEEEee-cCCeeEEEeeccCCc-EEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeee
Confidence 9999999999998887 578899999999998 4444432 358999999843 35678888888999999
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 309 EWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 309 ~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
-|.|-++ .|++|.+||.|.+||+++.. +++.+...|...|++++++++.. ++++++.|..-++||
T Consensus 154 ~Wg~l~~-~ii~Ghe~G~is~~da~~g~-------------~~v~s~~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~D 218 (327)
T KOG0643|consen 154 LWGPLGE-TIIAGHEDGSISIYDARTGK-------------ELVDSDEEHSSKINDLQFSRDRT-YFITGSKDTTAKLVD 218 (327)
T ss_pred eecccCC-EEEEecCCCcEEEEEcccCc-------------eeeechhhhccccccccccCCcc-eEEecccCccceeee
Confidence 9999998 59999999999999999732 55666677899999999999999 689999999999999
Q ss_pred CCCccc
Q 015484 389 MTDSIY 394 (406)
Q Consensus 389 ~~~~~~ 394 (406)
+.+-.+
T Consensus 219 ~~tl~v 224 (327)
T KOG0643|consen 219 VRTLEV 224 (327)
T ss_pred ccceee
Confidence 987543
No 125
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.8e-24 Score=175.25 Aligned_cols=254 Identities=17% Similarity=0.271 Sum_probs=191.7
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
...+.|.. ..|+.|++.| .+||+|..+|.|.|||+.+ ..+...+.+|..+|++++||++|+ +|+|+|.|
T Consensus 18 ~~tld~~~-a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~T--------~~iar~lsaH~~pi~sl~WS~dgr-~LltsS~D 86 (405)
T KOG1273|consen 18 THTLDNPL-AECCQFSRWG-DYLAVGCANGRVVIYDFDT--------FRIARMLSAHVRPITSLCWSRDGR-KLLTSSRD 86 (405)
T ss_pred ceeccCCc-cceEEeccCc-ceeeeeccCCcEEEEEccc--------cchhhhhhccccceeEEEecCCCC-EeeeecCC
Confidence 34455555 8999999999 7999999999999999998 445778899999999999999999 99999999
Q ss_pred CeEEEEeCCCccCCceeee-----------------ee----------eeec--c-----------CccEEEEEeeCCCC
Q 015484 189 NKICLWDVSALAQDKVIDA-----------------MH----------VYEA--H-----------ESVVEDVSWHLKNE 228 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~-----------------~~----------~~~~--~-----------~~~i~~i~~~p~~~ 228 (406)
..|.+||+..+.....+.. +. .+.. | .....+..|.+ .+
T Consensus 87 ~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr-~g 165 (405)
T KOG1273|consen 87 WSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR-RG 165 (405)
T ss_pred ceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC-CC
Confidence 9999999998754322210 00 0000 0 00001112444 56
Q ss_pred CEEEEEecCCcEEEEECCCCcccccccccC-CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC--------CcEEec
Q 015484 229 NLFGSAGDDCQLMIWDLRTNQTQQRVKAHE-KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV--------PLHILS 299 (406)
Q Consensus 229 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--------~~~~~~ 299 (406)
+++++|...|.+.++|..+.+++..++-.. ..|..+.++..|+ .|+.-+.|..|+.|+++.... +.+.+.
T Consensus 166 ~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~-~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~q 244 (405)
T KOG1273|consen 166 KYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGR-FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQ 244 (405)
T ss_pred CEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCc-EEEEecCCceEEEEehhhhcccCccCCcChhHHHH
Confidence 889999999999999999999888876555 7889999999999 899999999999999873211 111111
Q ss_pred --CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCC-CCeeeEEeCCCCCcEEE
Q 015484 300 --SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHK-AKISDFSWNKNDPWVIS 376 (406)
Q Consensus 300 --~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~~l~ 376 (406)
..+..-.+++|+.+|.+++++.+....++||.... ..++..+.|.. ....++.|+|-.+ +++
T Consensus 245 DvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~--------------GsLVKILhG~kgE~l~DV~whp~rp-~i~ 309 (405)
T KOG1273|consen 245 DVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSI--------------GSLVKILHGTKGEELLDVNWHPVRP-IIA 309 (405)
T ss_pred HHHhhhhhhheeecCCccEEEeccccceeEEEEecCC--------------cceeeeecCCchhheeeccccccee-eee
Confidence 11234567899999997666666778899999776 46777777766 5688999999988 677
Q ss_pred EEeCCCcEEEEeCCC
Q 015484 377 SVADDNTVQVWQMTD 391 (406)
Q Consensus 377 s~~~dg~i~iw~~~~ 391 (406)
+. ..|.++||....
T Consensus 310 si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 310 SI-ASGVVYIWAVVQ 323 (405)
T ss_pred ec-cCCceEEEEeec
Confidence 76 689999998753
No 126
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.3e-23 Score=172.70 Aligned_cols=234 Identities=17% Similarity=0.213 Sum_probs=180.9
Q ss_pred EEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec
Q 015484 107 EIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS 186 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 186 (406)
....++.|..++.+++|.++. .+++|+.||.|+.+|+.... ...+..|..+|.||..++... .+++|+
T Consensus 46 ~l~~~~~~~~plL~c~F~d~~--~~~~G~~dg~vr~~Dln~~~---------~~~igth~~~i~ci~~~~~~~-~vIsgs 113 (323)
T KOG1036|consen 46 SLKLKFKHGAPLLDCAFADES--TIVTGGLDGQVRRYDLNTGN---------EDQIGTHDEGIRCIEYSYEVG-CVISGS 113 (323)
T ss_pred hhhhheecCCceeeeeccCCc--eEEEeccCceEEEEEecCCc---------ceeeccCCCceEEEEeeccCC-eEEEcc
Confidence 456678899999999999865 58999999999999999842 455778999999999998665 999999
Q ss_pred CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc--cccCCCeeEE
Q 015484 187 HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV--KAHEKEVNYL 264 (406)
Q Consensus 187 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~i 264 (406)
.|++|++||.+..... ..+. ....|.++... ++.|++|+.+..+.+||+|+....... ...+-.++|+
T Consensus 114 WD~~ik~wD~R~~~~~------~~~d-~~kkVy~~~v~---g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v 183 (323)
T KOG1036|consen 114 WDKTIKFWDPRNKVVV------GTFD-QGKKVYCMDVS---GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCV 183 (323)
T ss_pred cCccEEEEeccccccc------cccc-cCceEEEEecc---CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEE
Confidence 9999999999863221 1122 23478887764 677788999999999999987654332 3345678999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCC---CCcEEecCCCC---------CeEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMRKMT---VPLHILSSHTE---------EVFQVEWDPNHETVLASSADDRRLMVWDL 332 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~h~~---------~v~~i~~~p~~~~~l~s~~~dg~i~iwd~ 332 (406)
++.|++. -+++++-||.|.+=.+.... .....|+.|.. +|++|+|+|-.. .|+||+.||.|.+||+
T Consensus 184 ~~~pn~e-Gy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~-tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 184 ALVPNGE-GYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG-TFATGGSDGIVNIWDL 261 (323)
T ss_pred EEecCCC-ceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc-eEEecCCCceEEEccC
Confidence 9999777 67888999988876555431 12344555653 699999999976 5999999999999999
Q ss_pred CCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEe
Q 015484 333 NRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVA 379 (406)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~ 379 (406)
.+ .+.+..+..-...|..++|+.+|. +||.++
T Consensus 262 ~~--------------rKrl~q~~~~~~SI~slsfs~dG~-~LAia~ 293 (323)
T KOG1036|consen 262 FN--------------RKRLKQLAKYETSISSLSFSMDGS-LLAIAS 293 (323)
T ss_pred cc--------------hhhhhhccCCCCceEEEEeccCCC-eEEEEe
Confidence 87 233344444456799999999999 677775
No 127
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=6e-23 Score=189.10 Aligned_cols=274 Identities=17% Similarity=0.251 Sum_probs=207.1
Q ss_pred EEEEEeecC-CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEe
Q 015484 107 EIAQKIRVD-GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSG 185 (406)
Q Consensus 107 ~~~~~~~h~-~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 185 (406)
++...+.|. ++|+.++|.-||+.++|+|+..|.+.+||++.... .......|.+.|....|.|..+ .++++
T Consensus 235 kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl-------~~v~~nah~~sv~~~~fl~~ep-Vl~ta 306 (910)
T KOG1539|consen 235 KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKL-------INVTRNAHYGSVTGATFLPGEP-VLVTA 306 (910)
T ss_pred cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCee-------eeeeeccccCCcccceecCCCc-eEeec
Confidence 346678886 99999999999999999999999999999998322 1233447889999999999666 99999
Q ss_pred cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECC-------------------
Q 015484 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR------------------- 246 (406)
Q Consensus 186 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~------------------- 246 (406)
+.|..+++|-.+++.... +.++...+|..+..+|.|.-..+..+.+++.|++++.+++.
T Consensus 307 ~~DnSlk~~vfD~~dg~p--R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk 384 (910)
T KOG1539|consen 307 GADNSLKVWVFDSGDGVP--RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKK 384 (910)
T ss_pred cCCCceeEEEeeCCCCcc--hheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccc
Confidence 999999999877654322 23455568888889998886667777788888777766542
Q ss_pred ----------------------------------------------CCcc-cccc-----cccCCCeeEEEecCCCCcEE
Q 015484 247 ----------------------------------------------TNQT-QQRV-----KAHEKEVNYLSFNPYNEWVL 274 (406)
Q Consensus 247 ----------------------------------------------~~~~-~~~~-----~~~~~~v~~i~~~~~~~~~l 274 (406)
.... ...+ +.....+++++.++.|+ +.
T Consensus 385 ~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN-F~ 463 (910)
T KOG1539|consen 385 VNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN-FV 463 (910)
T ss_pred ccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc-eE
Confidence 1111 0000 11224577888888888 88
Q ss_pred EEEeCCCcEEEEeCCCCCCCcEEe---cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccccccc------
Q 015484 275 ATASSDTTVALFDMRKMTVPLHIL---SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAE------ 345 (406)
Q Consensus 275 ~~~~~dg~i~vwd~~~~~~~~~~~---~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------ 345 (406)
+.|+..|.|-+|++.++-. ...+ ..|.++|++++....++ ++++++.+|.+++||+.... ........
T Consensus 464 ~IG~S~G~Id~fNmQSGi~-r~sf~~~~ah~~~V~gla~D~~n~-~~vsa~~~Gilkfw~f~~k~-l~~~l~l~~~~~~i 540 (910)
T KOG1539|consen 464 FIGYSKGTIDRFNMQSGIH-RKSFGDSPAHKGEVTGLAVDGTNR-LLVSAGADGILKFWDFKKKV-LKKSLRLGSSITGI 540 (910)
T ss_pred EEeccCCeEEEEEcccCee-ecccccCccccCceeEEEecCCCc-eEEEccCcceEEEEecCCcc-eeeeeccCCCccee
Confidence 8899999999999998654 4455 58999999999998886 79999999999999998743 11111111
Q ss_pred ----------------------CCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 346 ----------------------DGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 346 ----------------------~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
....+.+..+.||.+.|++++|||+|+| |++++.|++|++||+.++.+-
T Consensus 541 v~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrW-lisasmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 541 VYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRW-LISASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred eeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcE-EEEeecCCcEEEEeccCccee
Confidence 1112233445689999999999999997 788999999999999998653
No 128
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=4.6e-24 Score=190.94 Aligned_cols=266 Identities=18% Similarity=0.352 Sum_probs=193.7
Q ss_pred EEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec
Q 015484 107 EIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS 186 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 186 (406)
++...+.|.+.|..+.|.| +...|++++.|.++++||+..... .-...+.+|...|.+++|.+.+...|++|+
T Consensus 92 ~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l------~G~~~~~GH~~SvkS~cf~~~n~~vF~tGg 164 (720)
T KOG0321|consen 92 QLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRL------VGGRLNLGHTGSVKSECFMPTNPAVFCTGG 164 (720)
T ss_pred hhcccccccceeEeeccCC-CceeEEEccCCceeeeeeecccee------ecceeecccccccchhhhccCCCcceeecc
Confidence 3455678999999999999 668999999999999999998433 223357899999999999999998999999
Q ss_pred CCCeEEEEeCCCccCC-----------------ceeee----eeeeeccCccE----EEEEeeCCCCCEEEEEec-CCcE
Q 015484 187 HDNKICLWDVSALAQD-----------------KVIDA----MHVYEAHESVV----EDVSWHLKNENLFGSAGD-DCQL 240 (406)
Q Consensus 187 ~dg~i~iwd~~~~~~~-----------------~~~~~----~~~~~~~~~~i----~~i~~~p~~~~~l~~~~~-dg~i 240 (406)
.||.|.|||++-.... ...++ ......+...| +.+.|- +...||+++. |+.|
T Consensus 165 RDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk--De~tlaSaga~D~~i 242 (720)
T KOG0321|consen 165 RDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK--DESTLASAGAADSTI 242 (720)
T ss_pred CCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe--ccceeeeccCCCcce
Confidence 9999999998753200 00000 11222333334 444443 6778888877 9999
Q ss_pred EEEECCCCccccc--------cccc---CCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC-CCcEEecCCCCC--eE
Q 015484 241 MIWDLRTNQTQQR--------VKAH---EKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT-VPLHILSSHTEE--VF 306 (406)
Q Consensus 241 ~i~d~~~~~~~~~--------~~~~---~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~h~~~--v~ 306 (406)
++||++....... +..+ ...+.++..+..|.+++|++. |+.|++|+++... .|+..+.++... -.
T Consensus 243 KVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~sf~v 321 (720)
T KOG0321|consen 243 KVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLNSSFYV 321 (720)
T ss_pred EEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCcccceeee
Confidence 9999997644221 1222 345778888888895555555 9999999998754 344445444321 22
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEE
Q 015484 307 QVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQV 386 (406)
Q Consensus 307 ~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~i 386 (406)
.-..+|++. .+++|+.|....+|.+.... .....+.||.-.|++++|.|..-.=++++++|..++|
T Consensus 322 ks~lSpd~~-~l~SgSsd~~ayiw~vs~~e-------------~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~ki 387 (720)
T KOG0321|consen 322 KSELSPDDC-SLLSGSSDEQAYIWVVSSPE-------------APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKI 387 (720)
T ss_pred eeecCCCCc-eEeccCCCcceeeeeecCcc-------------CChhhhhCcceEEEEEeeccccCCCceeeccCcceEE
Confidence 335689997 59999999999999998733 3344557899999999998854334778899999999
Q ss_pred EeCCCcccCC
Q 015484 387 WQMTDSIYRD 396 (406)
Q Consensus 387 w~~~~~~~~~ 396 (406)
|++.+++-+.
T Consensus 388 W~l~~~l~e~ 397 (720)
T KOG0321|consen 388 WRLSNGLEEI 397 (720)
T ss_pred EeccCchhhc
Confidence 9998776543
No 129
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.3e-25 Score=210.78 Aligned_cols=261 Identities=25% Similarity=0.425 Sum_probs=200.5
Q ss_pred eeEEEEcCCCCcEEEEEeC----------CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCC---eEEE
Q 015484 118 VNRARCMPQKPNLVGTKTS----------SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEG---YLVS 184 (406)
Q Consensus 118 v~~i~~~p~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~---~l~s 184 (406)
-..++|+|.++.++|+|.. +.++-||.+...... ...++...+. -....+.++|.+.+.. +|+.
T Consensus 9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~--~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaG 85 (1049)
T KOG0307|consen 9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDES--SDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAG 85 (1049)
T ss_pred cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcc--cccccccccc-ccccceeeeecccCCCccceeec
Confidence 3456899988767777754 345556655442211 1122333332 3456789999998764 5999
Q ss_pred ecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc--cccCCCee
Q 015484 185 GSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV--KAHEKEVN 262 (406)
Q Consensus 185 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~ 262 (406)
|..||.|.+||...-........+.....|.+.|..+.|++..++++|+|+.||.|.|||+...+..... ......|.
T Consensus 86 G~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~ 165 (1049)
T KOG0307|consen 86 GLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIK 165 (1049)
T ss_pred cccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccce
Confidence 9999999999988743333445567778899999999999988899999999999999999886554444 23567899
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCC--CeEEEEEcCCCCCEEEEEeCCC---cEEEEeCCCCCc
Q 015484 263 YLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTE--EVFQVEWDPNHETVLASSADDR---RLMVWDLNRIGD 337 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~--~v~~i~~~p~~~~~l~s~~~dg---~i~iwd~~~~~~ 337 (406)
+++|+..-..+|++++.+|.+.|||+|..+ ++..+..|.+ .+..++|+|++..-|++++.|. .|.+||++...
T Consensus 166 ~lsWNrkvqhILAS~s~sg~~~iWDlr~~~-pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as- 243 (1049)
T KOG0307|consen 166 CLSWNRKVSHILASGSPSGRAVIWDLRKKK-PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS- 243 (1049)
T ss_pred EeccchhhhHHhhccCCCCCceeccccCCC-cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC-
Confidence 999999888899999999999999999864 4656655544 5789999999887777777654 59999999732
Q ss_pred ccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 338 EQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
..+..+.+|...|.++.|++.+..+++|++.|+.|.+|+.+++...
T Consensus 244 ------------sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl 289 (1049)
T KOG0307|consen 244 ------------SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVL 289 (1049)
T ss_pred ------------CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEe
Confidence 4455668899999999999998668999999999999999997553
No 130
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=1.3e-23 Score=199.05 Aligned_cols=217 Identities=23% Similarity=0.409 Sum_probs=176.4
Q ss_pred EEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCc----------cccccCCCCCceeeeCCCCCeeEEEecCC
Q 015484 108 IAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQ----------AEKQQDDCDPDLRLKGHDKEGYGLSWSPF 177 (406)
Q Consensus 108 ~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~----------~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 177 (406)
+.....|.+.|+|++|+|+| .+||+|++|+.|.||..... .......++....+.+|...|..++|+|+
T Consensus 62 l~~m~~h~~sv~CVR~S~dG-~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~ 140 (942)
T KOG0973|consen 62 LCTMDDHDGSVNCVRFSPDG-SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD 140 (942)
T ss_pred heeeccccCceeEEEECCCC-CeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC
Confidence 34566899999999999999 68999999999999998841 11111356678899999999999999999
Q ss_pred CCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc-------
Q 015484 178 KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT------- 250 (406)
Q Consensus 178 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~------- 250 (406)
+. +|++++.|++|.+|+..+. ..+..+.+|.+.|..+.|.| -+++||+-+.|++|++|++..-..
T Consensus 141 ~~-~lvS~s~DnsViiwn~~tF------~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~p 212 (942)
T KOG0973|consen 141 DS-LLVSVSLDNSVIIWNAKTF------ELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKP 212 (942)
T ss_pred cc-EEEEecccceEEEEccccc------eeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccc
Confidence 88 9999999999999998775 34577889999999999999 789999999999999998642100
Q ss_pred ---------------------------------------------cccccccCCCeeEEEecCC------C------C--
Q 015484 251 ---------------------------------------------QQRVKAHEKEVNYLSFNPY------N------E-- 271 (406)
Q Consensus 251 ---------------------------------------------~~~~~~~~~~v~~i~~~~~------~------~-- 271 (406)
-..+-+|..++.++.|+|. . .
T Consensus 213 f~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~ 292 (942)
T KOG0973|consen 213 FEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNC 292 (942)
T ss_pred hhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCc
Confidence 0123468888999999873 1 1
Q ss_pred --cEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 272 --WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 272 --~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
..+|+|+.|++|.||........+.........|..++|+|+|- .|.+++.||+|.+..+..
T Consensus 293 ~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~-~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 293 YYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGF-SLFACSLDGTVALIHFEE 356 (942)
T ss_pred ceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCC-eEEEEecCCeEEEEEcch
Confidence 17899999999999998665543333444567899999999996 588999999999999875
No 131
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.7e-25 Score=202.76 Aligned_cols=222 Identities=23% Similarity=0.448 Sum_probs=193.1
Q ss_pred EEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeee
Q 015484 131 VGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHV 210 (406)
Q Consensus 131 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 210 (406)
++.....-.+++|+.+. +..|...+.++..-..++ .+++|+.|..+.+|.+..... +..
T Consensus 7 ~m~~~~~t~Lr~~~~~~--------------~~~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~------i~S 65 (825)
T KOG0267|consen 7 LMKTKRATKLRVWDTRE--------------FVAHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNA------ITS 65 (825)
T ss_pred cceeeeeeccccccchh--------------hhhhhhhhceeeeeccce-eeccCCCceeeccccccCCch------hhe
Confidence 33444445567777765 456888888888755566 899999999999999877543 234
Q ss_pred eeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 211 YEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRK 290 (406)
Q Consensus 211 ~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~ 290 (406)
+.+|..+|.++.|++ ...++++|+.+|+|++||+...+.+.++.+|...+.++.|+|.+. ++|.|+.|+.+++||.|.
T Consensus 66 ~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk 143 (825)
T KOG0267|consen 66 LTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRK 143 (825)
T ss_pred eeccCCcceeeecCc-chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceE-Eeccccccccceehhhhc
Confidence 778999999999998 789999999999999999999999999999999999999999999 889999999999999997
Q ss_pred CCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCC
Q 015484 291 MTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKN 370 (406)
Q Consensus 291 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 370 (406)
..+ .+.+.+|...|..+.|+|+|+ +++.+++|..++|||+.. .+++..+.+|...+..+.|+|.
T Consensus 144 ~Gc-~~~~~s~~~vv~~l~lsP~Gr-~v~~g~ed~tvki~d~~a--------------gk~~~ef~~~e~~v~sle~hp~ 207 (825)
T KOG0267|consen 144 KGC-SHTYKSHTRVVDVLRLSPDGR-WVASGGEDNTVKIWDLTA--------------GKLSKEFKSHEGKVQSLEFHPL 207 (825)
T ss_pred cCc-eeeecCCcceeEEEeecCCCc-eeeccCCcceeeeecccc--------------cccccccccccccccccccCch
Confidence 665 888999999999999999998 699999999999999986 4677778899999999999998
Q ss_pred CCcEEEEEeCCCcEEEEeCCCc
Q 015484 371 DPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 371 ~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.- ++++|+.|++|++||+.+-
T Consensus 208 e~-Lla~Gs~d~tv~f~dletf 228 (825)
T KOG0267|consen 208 EV-LLAPGSSDRTVRFWDLETF 228 (825)
T ss_pred hh-hhccCCCCceeeeecccee
Confidence 76 8999999999999999953
No 132
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=1e-23 Score=183.87 Aligned_cols=241 Identities=17% Similarity=0.264 Sum_probs=200.1
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
....-|+++...|++ +-|++|+.-.++.|||+..... .....+....-.+++++.+|+.+ ..+++..||.|.
T Consensus 463 ~rdnyiRSckL~pdg-rtLivGGeastlsiWDLAapTp------rikaeltssapaCyALa~spDak-vcFsccsdGnI~ 534 (705)
T KOG0639|consen 463 NRDNYIRSCKLLPDG-RTLIVGGEASTLSIWDLAAPTP------RIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIA 534 (705)
T ss_pred CcccceeeeEecCCC-ceEEeccccceeeeeeccCCCc------chhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEE
Confidence 345678999999999 5688889999999999987422 22334444445788999999988 999999999999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCc
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEW 272 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 272 (406)
|||+.+.. .++.+++|...+.||..++ ++..|-+|+-|.+||.||+|+++.+.... ..+.|.++..+|.++
T Consensus 535 vwDLhnq~------~VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~d- 605 (705)
T KOG0639|consen 535 VWDLHNQT------LVRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGD- 605 (705)
T ss_pred EEEcccce------eeecccCCCCCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCcc-
Confidence 99998753 3477889999999999998 67778899999999999999998877654 567899999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeE
Q 015484 273 VLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELL 352 (406)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (406)
.+++|-.++.+.|....... ...+..|.+.|.++.|.+.|+ ++++.+.|+.+..|....+ ..+
T Consensus 606 WlavGMens~vevlh~skp~--kyqlhlheScVLSlKFa~cGk-wfvStGkDnlLnawrtPyG--------------asi 668 (705)
T KOG0639|consen 606 WLAVGMENSNVEVLHTSKPE--KYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYG--------------ASI 668 (705)
T ss_pred ceeeecccCcEEEEecCCcc--ceeecccccEEEEEEecccCc-eeeecCchhhhhhccCccc--------------cce
Confidence 89999999999988877543 567788999999999999998 5999999999999988762 334
Q ss_pred EEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 353 FSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 353 ~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
|... ..+.|.++..+.+.+ +|++|+.|....+|.+
T Consensus 669 Fqsk-E~SsVlsCDIS~ddk-yIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 669 FQSK-ESSSVLSCDISFDDK-YIVTGSGDKKATVYEV 703 (705)
T ss_pred eecc-ccCcceeeeeccCce-EEEecCCCcceEEEEE
Confidence 4433 356799999999999 6999999999999876
No 133
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=2.7e-24 Score=187.42 Aligned_cols=253 Identities=16% Similarity=0.234 Sum_probs=202.6
Q ss_pred EEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee--CCCCCeeEEEecCCCCCeEEE
Q 015484 107 EIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK--GHDKEGYGLSWSPFKEGYLVS 184 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s 184 (406)
+.++.+.|..-|.++..+... ..+.||+. |.|+|||+..... ..|+..+. .....|.++...|+|+ .|++
T Consensus 411 rq~~tL~HGEvVcAvtIS~~t-rhVyTgGk-gcVKVWdis~pg~-----k~PvsqLdcl~rdnyiRSckL~pdgr-tLiv 482 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPT-RHVYTGGK-GCVKVWDISQPGN-----KSPVSQLDCLNRDNYIRSCKLLPDGR-TLIV 482 (705)
T ss_pred HhhhhhccCcEEEEEEecCCc-ceeEecCC-CeEEEeeccCCCC-----CCccccccccCcccceeeeEecCCCc-eEEe
Confidence 445677898889999998877 46888764 6699999987533 23344333 3456789999999999 9999
Q ss_pred ecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEE
Q 015484 185 GSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYL 264 (406)
Q Consensus 185 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i 264 (406)
|++-.++.|||+...... + ...+....-....++.+| +.++.++++.||.|.|||++....+..+.+|...+.||
T Consensus 483 GGeastlsiWDLAapTpr--i--kaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascI 557 (705)
T KOG0639|consen 483 GGEASTLSIWDLAAPTPR--I--KAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI 557 (705)
T ss_pred ccccceeeeeeccCCCcc--h--hhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCceeE
Confidence 999999999999875321 1 112222234577788999 67888899999999999999999999999999999999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 344 (406)
..+++|. .|.+|+-|.+|+.||+|.+.++. .. ...+.|.++..+|++++ ++.|.+.+.+.|-....
T Consensus 558 dis~dGt-klWTGGlDntvRcWDlregrqlq-qh-dF~SQIfSLg~cP~~dW-lavGMens~vevlh~sk---------- 623 (705)
T KOG0639|consen 558 DISKDGT-KLWTGGLDNTVRCWDLREGRQLQ-QH-DFSSQIFSLGYCPTGDW-LAVGMENSNVEVLHTSK---------- 623 (705)
T ss_pred EecCCCc-eeecCCCccceeehhhhhhhhhh-hh-hhhhhheecccCCCccc-eeeecccCcEEEEecCC----------
Confidence 9999998 89999999999999999876632 22 23578999999999985 99999999999888775
Q ss_pred cCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 345 EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 345 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.-.+.+.-|.+-|.++.|.+.|+| +++.|.|+.+..|...-+
T Consensus 624 -----p~kyqlhlheScVLSlKFa~cGkw-fvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 624 -----PEKYQLHLHESCVLSLKFAYCGKW-FVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred -----ccceeecccccEEEEEEecccCce-eeecCchhhhhhccCccc
Confidence 222334558889999999999996 788899999999998766
No 134
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.92 E-value=5.2e-23 Score=167.83 Aligned_cols=271 Identities=18% Similarity=0.325 Sum_probs=208.2
Q ss_pred CCeEEEEEeecCCceeEEEEc--CCCCcEEEEEeC----CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC
Q 015484 104 PKVEIAQKIRVDGEVNRARCM--PQKPNLVGTKTS----SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF 177 (406)
Q Consensus 104 ~~~~~~~~~~h~~~v~~i~~~--p~~~~~l~~~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 177 (406)
++.+.+..+.-.-++.++.|+ |+.+..||.|+. .+.|.|..+...... ...... ..|.-+++.+.|.|+
T Consensus 33 ~r~~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e----~~~~a~-fd~~YP~tK~~wiPd 107 (364)
T KOG0290|consen 33 PRRKEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGE----LVEDAN-FDHPYPVTKLMWIPD 107 (364)
T ss_pred cccceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCc----eeccCC-CCCCCCccceEecCC
Confidence 455556677778899999999 455578999875 467888777643221 111222 368889999999997
Q ss_pred CC----CeEEEecCCCeEEEEeCCCccCCceeee---eeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc
Q 015484 178 KE----GYLVSGSHDNKICLWDVSALAQDKVIDA---MHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT 250 (406)
Q Consensus 178 ~~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~ 250 (406)
.. .+|||.+ ..+++|.+........... ...-..+..++++..|+..+.+++.+.+-|-+..|||++++..
T Consensus 108 ~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~ 185 (364)
T KOG0290|consen 108 SKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS 185 (364)
T ss_pred ccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc
Confidence 63 2566654 4799999874322111111 1122346689999999999999999999999999999998743
Q ss_pred ---cccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC--CCCCeEEEEEcCCCCCEEEEEeCC-
Q 015484 251 ---QQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS--HTEEVFQVEWDPNHETVLASSADD- 324 (406)
Q Consensus 251 ---~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--h~~~v~~i~~~p~~~~~l~s~~~d- 324 (406)
...+-+|...|..|+|...+..+||+.+.||.+++||+|..+...-.... ...+...++|++...+++|+-..|
T Consensus 186 ~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS 265 (364)
T KOG0290|consen 186 GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDS 265 (364)
T ss_pred cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCC
Confidence 45567899999999999988889999999999999999987753333332 246899999999998889887765
Q ss_pred CcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 325 RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 325 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
..|.|-|++. |...+..+++|.+.|+.++|.|..+..|+|+|.|..+-|||+..-.-
T Consensus 266 ~~V~iLDiR~-------------P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 266 NKVVILDIRV-------------PCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred ceEEEEEecC-------------CCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 4699999997 45677888999999999999999888899999999999999987544
No 135
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.2e-24 Score=182.32 Aligned_cols=211 Identities=21% Similarity=0.395 Sum_probs=170.1
Q ss_pred ceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC
Q 015484 159 DLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC 238 (406)
Q Consensus 159 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg 238 (406)
+..+.+|.+.|.|++=+|..-..+++|+.||.|++||+....+ ...+..|.+.|..|++.. ..+++++.|.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~------~~~f~AH~G~V~Gi~v~~---~~~~tvgdDK 129 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC------IRTFKAHEGLVRGICVTQ---TSFFTVGDDK 129 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhh------hheeecccCceeeEEecc---cceEEecCCc
Confidence 4567899999999999997745899999999999999987644 466778999999999873 5566888888
Q ss_pred cEEEEECC--------------------------------------CCcccccccccCCCeeEEEecCCCCcEEEEEeCC
Q 015484 239 QLMIWDLR--------------------------------------TNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD 280 (406)
Q Consensus 239 ~i~i~d~~--------------------------------------~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d 280 (406)
+|+.|-+. ...++..+.-....|.++.|+|....+|++++.|
T Consensus 130 tvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD 209 (433)
T KOG0268|consen 130 TVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD 209 (433)
T ss_pred ceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccC
Confidence 88777632 2222333333445678899999888899999999
Q ss_pred CcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCC
Q 015484 281 TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKA 360 (406)
Q Consensus 281 g~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 360 (406)
+.|.+||+|.... ++.... ...-+.|+|+|.. ..+++|++|..++.||++... ..+..+.+|.+
T Consensus 210 rsIvLyD~R~~~P-l~KVi~-~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~-------------~p~~v~~dhvs 273 (433)
T KOG0268|consen 210 RSIVLYDLRQASP-LKKVIL-TMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLS-------------RPLNVHKDHVS 273 (433)
T ss_pred CceEEEecccCCc-cceeee-eccccceecCccc-cceeeccccccceehhhhhhc-------------ccchhhcccce
Confidence 9999999998654 444332 3456889999966 469999999999999999843 55677889999
Q ss_pred CeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 361 KISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 361 ~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
.|.++.|||.|+ -+++|+.|.+|+||.+..+.-+
T Consensus 274 AV~dVdfsptG~-EfvsgsyDksIRIf~~~~~~SR 307 (433)
T KOG0268|consen 274 AVMDVDFSPTGQ-EFVSGSYDKSIRIFPVNHGHSR 307 (433)
T ss_pred eEEEeccCCCcc-hhccccccceEEEeecCCCcch
Confidence 999999999999 6999999999999999887654
No 136
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=1.4e-23 Score=181.01 Aligned_cols=218 Identities=16% Similarity=0.268 Sum_probs=179.5
Q ss_pred ceeeeCCCCCeeEEEecCCCC-CeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC
Q 015484 159 DLRLKGHDKEGYGLSWSPFKE-GYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD 237 (406)
Q Consensus 159 ~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d 237 (406)
......+.+.|++++|+|... .++++|+.-|.|-+||+.... +....+..+..|..+|.++.|+|.+...+++.+.|
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~--~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE--KDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCC--CccCceEEeccCCccccceEecCCChhheeeeccC
Confidence 455677889999999999865 689999999999999996322 22334567788999999999999999999999999
Q ss_pred CcEEEEECCCCcccc--cccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCC
Q 015484 238 CQLMIWDLRTNQTQQ--RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHE 315 (406)
Q Consensus 238 g~i~i~d~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~ 315 (406)
|+|++-|++...... ........+.++.|+.... .++.+..=|...+||+|..+.....+..|...|.+|+++|..+
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p 335 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCP 335 (498)
T ss_pred ceeeeeeecchhhHHHhhcCccceeeeeccccCCCc-cEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCc
Confidence 999999998765433 3333556677888988777 5666666679999999998876777888999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 316 TVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 316 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
++|+|++.|++++|||++...... ..+.....|...|.++.|||.+.. |++.+.|+.|+|||..
T Consensus 336 ~~laT~s~D~T~kIWD~R~l~~K~----------sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 336 WFLATASLDQTAKIWDLRQLRGKA----------SPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSS 399 (498)
T ss_pred hheeecccCcceeeeehhhhcCCC----------CcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecc
Confidence 999999999999999999854321 123445579999999999999884 8888999999999985
No 137
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.92 E-value=8.4e-23 Score=169.00 Aligned_cols=257 Identities=18% Similarity=0.263 Sum_probs=193.6
Q ss_pred EEEEEeecCCceeEEEEcC-------CCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCC---eeEEEecC
Q 015484 107 EIAQKIRVDGEVNRARCMP-------QKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKE---GYGLSWSP 176 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p-------~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~---v~~l~~~~ 176 (406)
.......-...|...+|-+ +. +++|+.+.+.-|++||.-+++. +.......|... ..+++|+|
T Consensus 96 ~~~~r~~eg~tvydy~wYs~M~s~qP~t-~l~a~ssr~~PIh~wdaftG~l------raSy~~ydh~de~taAhsL~Fs~ 168 (406)
T KOG2919|consen 96 HLSYRYQEGETVYDYCWYSRMKSDQPST-NLFAVSSRDQPIHLWDAFTGKL------RASYRAYDHQDEYTAAHSLQFSP 168 (406)
T ss_pred ceeEEeccCCEEEEEEeeeccccCCCcc-ceeeeccccCceeeeecccccc------ccchhhhhhHHhhhhheeEEecC
Confidence 3344455667888888873 34 6899999999999999998543 223333345443 45899999
Q ss_pred CCCCeEEEecCCCeEEEEeCCCcc-CCceeeeeee-eeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc
Q 015484 177 FKEGYLVSGSHDNKICLWDVSALA-QDKVIDAMHV-YEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV 254 (406)
Q Consensus 177 ~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~-~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 254 (406)
+|. .|++| ...+|++||+.... .-.....+.. -.+..+-|.+++|+|.+...++.++....+-||.-..+.++..+
T Consensus 169 DGe-qlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll 246 (406)
T KOG2919|consen 169 DGE-QLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL 246 (406)
T ss_pred CCC-eEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee
Confidence 999 88877 56899999995433 2222211111 12346788999999998889999999999999998888889999
Q ss_pred cccCCCeeEEEecCCCCcEEEEEeC-CCcEEEEeCCCCCCCcEEecCCCC-CeEEEE--EcCCCCCEEEEEeCCCcEEEE
Q 015484 255 KAHEKEVNYLSFNPYNEWVLATASS-DTTVALFDMRKMTVPLHILSSHTE-EVFQVE--WDPNHETVLASSADDRRLMVW 330 (406)
Q Consensus 255 ~~~~~~v~~i~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~h~~-~v~~i~--~~p~~~~~l~s~~~dg~i~iw 330 (406)
.+|.+.|+.++|+++|+ .|++|.. |-.|..||+|....|+..+..|.. .=..|. ..|.++ +|++|+.||.|++|
T Consensus 247 ggh~gGvThL~~~edGn-~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vw 324 (406)
T KOG2919|consen 247 GGHGGGVTHLQWCEDGN-KLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVW 324 (406)
T ss_pred cccCCCeeeEEeccCcC-eecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCc-eeeccCCCccEEEE
Confidence 99999999999999999 6777665 668999999998888888888876 333444 468887 79999999999999
Q ss_pred eCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 331 DLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 331 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
|+...+. .+.....|...++.++++|--+ ++|+++.. ++|...+
T Consensus 325 dlk~~gn-------------~~sv~~~~sd~vNgvslnP~mp-ilatssGq---r~f~~~~ 368 (406)
T KOG2919|consen 325 DLKDLGN-------------EVSVTGNYSDTVNGVSLNPIMP-ILATSSGQ---RIFKYPK 368 (406)
T ss_pred ecCCCCC-------------cccccccccccccceecCcccc-eeeeccCc---eeecCCC
Confidence 9987432 2344566788899999999988 78887633 4444433
No 138
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=4.7e-23 Score=183.28 Aligned_cols=266 Identities=19% Similarity=0.287 Sum_probs=205.5
Q ss_pred CCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccc-------------------------------
Q 015484 104 PKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQ------------------------------- 152 (406)
Q Consensus 104 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~------------------------------- 152 (406)
|........+|++.|.+|...|.| ..||+|+.||+|+||.+.++...-
T Consensus 389 Pt~~~lvyrGHtg~Vr~iSvdp~G-~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ 467 (733)
T KOG0650|consen 389 PTRCALVYRGHTGLVRSISVDPSG-EWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVL 467 (733)
T ss_pred cceeeeeEeccCCeEEEEEecCCc-ceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceE
Confidence 334445566899999999999988 799999999999999998754321
Q ss_pred --------------------cC-----------C---------CCCceeeeCCCCCeeEEEecCCCCCeEEEecCC---C
Q 015484 153 --------------------QD-----------D---------CDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD---N 189 (406)
Q Consensus 153 --------------------~~-----------~---------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g 189 (406)
.. . ..-+.....|...|..+.|+..|. +|++..-+ .
T Consensus 468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD-YlatV~~~~~~~ 546 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD-YLATVMPDSGNK 546 (733)
T ss_pred EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCc-eEEEeccCCCcc
Confidence 00 0 000123345778889999999998 99887654 4
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~ 269 (406)
.|.|.++...... ..|....+.|.++.|+|....+| +++ ...|++||+-....++.+......|.+++.+|.
T Consensus 547 ~VliHQLSK~~sQ------~PF~kskG~vq~v~FHPs~p~lf-VaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~ 618 (733)
T KOG0650|consen 547 SVLIHQLSKRKSQ------SPFRKSKGLVQRVKFHPSKPYLF-VAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPN 618 (733)
T ss_pred eEEEEeccccccc------CchhhcCCceeEEEecCCCceEE-EEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCC
Confidence 6888888876443 22334567899999999544444 444 367999999988888888777888999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCC
Q 015484 270 NEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (406)
|. -|+.|+.|+.+..||+.-...|.+++..|...+++++|++.-+ ++++|+.||++.|+.-.--.... .+.-.
T Consensus 619 GD-nli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfhg~VY~Dl~-----qnpli 691 (733)
T KOG0650|consen 619 GD-NLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFHGMVYNDLL-----QNPLI 691 (733)
T ss_pred CC-eEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEeeeeehhhh-----cCCce
Confidence 99 6788999999999999988889999999999999999999987 89999999999998654311110 01113
Q ss_pred eeEEEecCCCCC----eeeEEeCCCCCcEEEEEeCCCcEEEE
Q 015484 350 ELLFSHGGHKAK----ISDFSWNKNDPWVISSVADDNTVQVW 387 (406)
Q Consensus 350 ~~~~~~~~h~~~----v~~~~~s~~~~~~l~s~~~dg~i~iw 387 (406)
..+..+.+|... |.++.|+|..+| |.++|.||.|++|
T Consensus 692 VPlK~L~gH~~~~~~gVLd~~wHP~qpW-LfsAGAd~tirlf 732 (733)
T KOG0650|consen 692 VPLKRLRGHEKTNDLGVLDTIWHPRQPW-LFSAGADGTIRLF 732 (733)
T ss_pred EeeeeccCceeecccceEeecccCCCce-EEecCCCceEEee
Confidence 456667888766 999999999998 6677889999998
No 139
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.6e-22 Score=180.15 Aligned_cols=244 Identities=18% Similarity=0.259 Sum_probs=198.5
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCC-CCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGH-DKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
-+.+|.+++|+.+. +.||.+-.+|.|.||++... +-....+.++ ...|.+++|++.+ .|++.+.+|.|.
T Consensus 24 ~Ps~I~slA~s~kS-~~lAvsRt~g~IEiwN~~~~-------w~~~~vi~g~~drsIE~L~W~e~~--RLFS~g~sg~i~ 93 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKS-NQLAVSRTDGNIEIWNLSNN-------WFLEPVIHGPEDRSIESLAWAEGG--RLFSSGLSGSIT 93 (691)
T ss_pred eccceEEEEEeccC-CceeeeccCCcEEEEccCCC-------ceeeEEEecCCCCceeeEEEccCC--eEEeecCCceEE
Confidence 46899999999988 57999999999999999983 4445556655 4679999999644 699999999999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccc--cccccCCCeeEEEecCCC
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ--RVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~v~~i~~~~~~ 270 (406)
-||+.+.+. +.......++|++++.+| .+..++.|++||.+..++...++... .+...++.|.+++|+|++
T Consensus 94 EwDl~~lk~------~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~ 166 (691)
T KOG2048|consen 94 EWDLHTLKQ------KYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTG 166 (691)
T ss_pred EEecccCce------eEEecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCc
Confidence 999988654 344556778999999999 67888899999988888887766533 335557899999999999
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCcEE-----ecC---CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccc
Q 015484 271 EWVLATASSDTTVALFDMRKMTVPLHI-----LSS---HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLEL 342 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~~~~~~-----~~~---h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 342 (406)
. .+++|+.||.|++||...+.. +.. ... ...-|.++.|-.++ .|++|..-|+|.+||...
T Consensus 167 ~-~i~~Gs~Dg~Iriwd~~~~~t-~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~-------- 234 (691)
T KOG2048|consen 167 T-KIAGGSIDGVIRIWDVKSGQT-LHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIF-------- 234 (691)
T ss_pred c-EEEecccCceEEEEEcCCCce-EEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccC--------
Confidence 8 899999999999999998664 331 111 22347888888776 499999999999999887
Q ss_pred cccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 343 DAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 343 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
..++..+..|.+.|.+++.++++. .+.++|.|+.|.-+...++.
T Consensus 235 ------gTLiqS~~~h~adVl~Lav~~~~d-~vfsaGvd~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 235 ------GTLIQSHSCHDADVLALAVADNED-RVFSAGVDPKIIQYSLTTNK 278 (691)
T ss_pred ------cchhhhhhhhhcceeEEEEcCCCC-eEEEccCCCceEEEEecCCc
Confidence 467778888999999999999988 57888999999988887763
No 140
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=1.1e-21 Score=175.41 Aligned_cols=250 Identities=12% Similarity=0.119 Sum_probs=172.5
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeE-EEecCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYL-VSGSHD 188 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l-~s~~~d 188 (406)
..+.+...+..++|+|++..++++++.++.|++||..+... ...+..+. .+..++|+|+++ .+ ++++.+
T Consensus 25 ~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~--------~~~~~~~~-~~~~~~~~~~g~-~l~~~~~~~ 94 (300)
T TIGR03866 25 RTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV--------IGTLPSGP-DPELFALHPNGK-ILYIANEDD 94 (300)
T ss_pred EEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcE--------EEeccCCC-CccEEEECCCCC-EEEEEcCCC
Confidence 34444455788999999965567788899999999987321 23333333 346789999988 55 455678
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC-cEEEEECCCCcccccccccCCCeeEEEec
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC-QLMIWDLRTNQTQQRVKAHEKEVNYLSFN 267 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~i~~~ 267 (406)
+.|++||+.+... +..+. +...+.+++|+| ++.+++++..++ .+.+||.++++....+. ......+++|+
T Consensus 95 ~~l~~~d~~~~~~------~~~~~-~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s 165 (300)
T TIGR03866 95 NLVTVIDIETRKV------LAEIP-VGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFT 165 (300)
T ss_pred CeEEEEECCCCeE------EeEee-CCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEEC
Confidence 9999999987432 12222 233467899999 677777777664 56778998876654443 23345789999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCC-------CCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccc
Q 015484 268 PYNEWVLATASSDTTVALFDMRKMTVPLHILSSHT-------EEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL 340 (406)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~-------~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 340 (406)
|++..+++++..++.|++||+++.+. +..+..+. .....++|+|+++.++++.+.++.+.+||+.+.
T Consensus 166 ~dg~~l~~~~~~~~~v~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~----- 239 (300)
T TIGR03866 166 ADGKELWVSSEIGGTVSVIDVATRKV-IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY----- 239 (300)
T ss_pred CCCCEEEEEcCCCCEEEEEEcCccee-eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC-----
Confidence 99984445556689999999998653 33332221 123578999999865566666788999998752
Q ss_pred cccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 341 ELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 341 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
+.+.... +...+.+++|+|++++++++++.+|.|++||+.++..
T Consensus 240 ---------~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 240 ---------EVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred ---------cEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 2222221 2346889999999995444456799999999998764
No 141
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=5.9e-23 Score=186.16 Aligned_cols=249 Identities=18% Similarity=0.289 Sum_probs=203.5
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC--CCCeEEEecCC
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF--KEGYLVSGSHD 188 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~d 188 (406)
...-.-.+++++.+|++ ..||+|..-|+++||++.. .........|..+|.|+.++.. +..+|++++.|
T Consensus 455 ~~d~r~G~R~~~vSp~g-qhLAsGDr~GnlrVy~Lq~--------l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrd 525 (1080)
T KOG1408|consen 455 TCDSRFGFRALAVSPDG-QHLASGDRGGNLRVYDLQE--------LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRD 525 (1080)
T ss_pred hcCcccceEEEEECCCc-ceecccCccCceEEEEehh--------hhhhhheecccceeEEEeecCchhhhHhhhhccCC
Confidence 34455689999999999 5799999999999999998 3446678899999999999863 23389999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCC-CCEEEEEecCCcEEEEECCCC-cccccc-----cccCCCe
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKN-ENLFGSAGDDCQLMIWDLRTN-QTQQRV-----KAHEKEV 261 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~-~~~l~~~~~dg~i~i~d~~~~-~~~~~~-----~~~~~~v 261 (406)
.-|.+||+... +..++++.+|...|+++.|...+ +..+++++.|..|.+ +.... .....+ ......+
T Consensus 526 RlIHV~Dv~rn-----y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTl 599 (1080)
T KOG1408|consen 526 RLIHVYDVKRN-----YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTL 599 (1080)
T ss_pred ceEEEEecccc-----cchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCceeccccccccccceE
Confidence 99999998653 34567788999999999998643 256779999987764 43331 111122 1224568
Q ss_pred eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec---CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcc
Q 015484 262 NYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILS---SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE 338 (406)
Q Consensus 262 ~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 338 (406)
+.++..|... ++++++.|..|+|||+.+++. .+.|+ .|.+....+...|.|- ++++.+.|.++.++|+.+
T Consensus 600 YDm~Vdp~~k-~v~t~cQDrnirif~i~sgKq-~k~FKgs~~~eG~lIKv~lDPSgi-Y~atScsdktl~~~Df~s---- 672 (1080)
T KOG1408|consen 600 YDMAVDPTSK-LVVTVCQDRNIRIFDIESGKQ-VKSFKGSRDHEGDLIKVILDPSGI-YLATSCSDKTLCFVDFVS---- 672 (1080)
T ss_pred EEeeeCCCcc-eEEEEecccceEEEeccccce-eeeecccccCCCceEEEEECCCcc-EEEEeecCCceEEEEecc----
Confidence 8999999988 999999999999999999876 66665 4667889999999997 599999999999999987
Q ss_pred cccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 339 QLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.+++....||...|+.+.|.++-+ .|++.+.||.|.||.+...
T Consensus 673 ----------gEcvA~m~GHsE~VTG~kF~nDCk-HlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 673 ----------GECVAQMTGHSEAVTGVKFLNDCK-HLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred ----------chhhhhhcCcchheeeeeecccch-hheeecCCceEEEEECchh
Confidence 577888899999999999999999 5889999999999999764
No 142
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=5e-22 Score=171.66 Aligned_cols=258 Identities=14% Similarity=0.197 Sum_probs=193.4
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
+.|+++.|+|..+ +|++++.||+++||.+.... ...+..+.--..+|.+.+|.|+|...+++++....+..||
T Consensus 214 ~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~------N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyD 286 (514)
T KOG2055|consen 214 GGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKV------NPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYD 286 (514)
T ss_pred CCceEEEecCCCc-eEEEecCCCcEEEEEecCcc------ChhheeeeeccCccceeeecCCCceEEEecccceEEEEee
Confidence 7999999999884 78999999999999998742 2334555556789999999999987899999999999999
Q ss_pred CCCccCCceeeeeeeeecc-CccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEE
Q 015484 196 VSALAQDKVIDAMHVYEAH-ESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVL 274 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 274 (406)
+.+.+..+. ....++ ...+.....+| ++++++..+..|.|.+.-..+++.+..++ -.+.|..++|+.++. .|
T Consensus 287 le~ak~~k~----~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk-~l 359 (514)
T KOG2055|consen 287 LETAKVTKL----KPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSK-EL 359 (514)
T ss_pred ccccccccc----cCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCc-EE
Confidence 988655322 222232 34566777887 67899999999999999999999988887 577899999999998 67
Q ss_pred EEEeCCCcEEEEeCCCCCCCcEEecCCC-CCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccc-----cccc-----
Q 015484 275 ATASSDTTVALFDMRKMTVPLHILSSHT-EEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ-----LELD----- 343 (406)
Q Consensus 275 ~~~~~dg~i~vwd~~~~~~~~~~~~~h~-~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~----- 343 (406)
++.+.+|.|.+||++.... ++.+.... -.-++++.++++. +||+|+..|.|.|||..+..... ....
T Consensus 360 ~~~~~~GeV~v~nl~~~~~-~~rf~D~G~v~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~ 437 (514)
T KOG2055|consen 360 LASGGTGEVYVWNLRQNSC-LHRFVDDGSVHGTSLCISLNGS-YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTA 437 (514)
T ss_pred EEEcCCceEEEEecCCcce-EEEEeecCccceeeeeecCCCc-eEEeccCcceEEEeccchhhccCCCCchhhhhhhhee
Confidence 7777789999999998754 55554322 2346677788997 69999999999999976532110 0000
Q ss_pred -------c-----------cCC-------CCeeEEEe----cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 344 -------A-----------EDG-------PPELLFSH----GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 344 -------~-----------~~~-------~~~~~~~~----~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
. ... |...++.. ....+.|++++|+|.+. ++|.|..+|.|.+|.+.
T Consensus 438 Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG-~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 438 ITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSG-YLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCc-eEEeecCCCceeeEeec
Confidence 0 000 11111110 12335699999999998 69999999999999875
No 143
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.6e-22 Score=173.74 Aligned_cols=246 Identities=16% Similarity=0.244 Sum_probs=189.8
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeee
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAM 208 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 208 (406)
+++++-.....+.+|.+..... .....--.++|.+++-+|.|. +|+.|+..|.|.+|.+.++.. +
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~--------~~q~~v~Pg~v~al~s~n~G~-~l~ag~i~g~lYlWelssG~L------L 116 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQ--------VVQYIVLPGPVHALASSNLGY-FLLAGTISGNLYLWELSSGIL------L 116 (476)
T ss_pred heeeecccCccccccccCchhh--------hhhhcccccceeeeecCCCce-EEEeecccCcEEEEEeccccH------H
Confidence 3444444556799999987432 112223457899999999998 888888999999999999854 3
Q ss_pred eeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECC---------CCcccccccccCCCeeEEEecCCC-CcEEEEEe
Q 015484 209 HVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR---------TNQTQQRVKAHEKEVNYLSFNPYN-EWVLATAS 278 (406)
Q Consensus 209 ~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~---------~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~~~~ 278 (406)
..+.+|-..|+|+.|+- ++.+|++|+.||.|.+|++- +-++...+..|.-+|+.+...+.+ ...+++++
T Consensus 117 ~v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS 195 (476)
T KOG0646|consen 117 NVLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS 195 (476)
T ss_pred HHHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEec
Confidence 55578999999999996 78999999999999999874 234466778899999999887652 23799999
Q ss_pred CCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccc--ccccCCCCeeEEEec
Q 015484 279 SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE--LDAEDGPPELLFSHG 356 (406)
Q Consensus 279 ~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~ 356 (406)
.|.++++||+..+.. +..+. ....+.+++.+|-+. .+..|+.+|.|.+.++......... .............+.
T Consensus 196 ~D~t~k~wdlS~g~L-Llti~-fp~si~av~lDpae~-~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~ 272 (476)
T KOG0646|consen 196 EDRTIKLWDLSLGVL-LLTIT-FPSSIKAVALDPAER-VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLV 272 (476)
T ss_pred CCceEEEEEecccee-eEEEe-cCCcceeEEEccccc-EEEecCCcceEEeeehhcCCcccccccccccccccceeeeec
Confidence 999999999998765 44443 357899999999986 6999999999999998764421110 001111124455667
Q ss_pred CCCC--CeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 357 GHKA--KISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 357 ~h~~--~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
||.+ .|++++.+-||. +|++|+.||.|.|||+.+..+
T Consensus 273 Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 273 GHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYSKQC 311 (476)
T ss_pred cccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecchHHH
Confidence 8888 999999999999 899999999999999987654
No 144
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=4e-22 Score=164.44 Aligned_cols=232 Identities=16% Similarity=0.265 Sum_probs=176.7
Q ss_pred EEEEEeCCCeEEEEeCCCccccc----cCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCcee
Q 015484 130 LVGTKTSSCEVYVFDCAKQAEKQ----QDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVI 205 (406)
Q Consensus 130 ~l~~~~~dg~i~iw~~~~~~~~~----~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 205 (406)
-|++|+....|.=+++....... .....|...+..|.++|++++.+ ++ ++++|+.|-+|+|||+.+....
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~-~~aSGssDetI~IYDm~k~~ql--- 76 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GP-YVASGSSDETIHIYDMRKRKQL--- 76 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ce-eEeccCCCCcEEEEeccchhhh---
Confidence 36778888877777776554111 12355578889999999999996 66 9999999999999999886432
Q ss_pred eeeeeeeccCccEEEEEeeCCC-CCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEE
Q 015484 206 DAMHVYEAHESVVEDVSWHLKN-ENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVA 284 (406)
Q Consensus 206 ~~~~~~~~~~~~i~~i~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~ 284 (406)
..+-.|.+.|+++.|.+.- ...|++|+.||.|.+|+...-..+..+++|...|+.++.+|.+. +.++.+.|+.++
T Consensus 77 ---g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr 152 (362)
T KOG0294|consen 77 ---GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLR 152 (362)
T ss_pred ---cceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCc-eEEEEcCCceee
Confidence 4456789999999998732 22677999999999999999999999999999999999999999 888888999999
Q ss_pred EEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeee
Q 015484 285 LFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISD 364 (406)
Q Consensus 285 vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 364 (406)
+||+-.++.....--. ..-+.+.|+|.|.+ ++.++.+ .|-||.+.... ++..-.....+.+
T Consensus 153 ~WNLV~Gr~a~v~~L~--~~at~v~w~~~Gd~-F~v~~~~-~i~i~q~d~A~---------------v~~~i~~~~r~l~ 213 (362)
T KOG0294|consen 153 TWNLVRGRVAFVLNLK--NKATLVSWSPQGDH-FVVSGRN-KIDIYQLDNAS---------------VFREIENPKRILC 213 (362)
T ss_pred eehhhcCccceeeccC--CcceeeEEcCCCCE-EEEEecc-EEEEEecccHh---------------Hhhhhhcccccee
Confidence 9999887652222222 22344999999986 5555544 68999987621 1111112245777
Q ss_pred EEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 365 FSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 365 ~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
+.|-..+ .+++|+.|+.|.+||.++.
T Consensus 214 ~~~l~~~--~L~vG~d~~~i~~~D~ds~ 239 (362)
T KOG0294|consen 214 ATFLDGS--ELLVGGDNEWISLKDTDSD 239 (362)
T ss_pred eeecCCc--eEEEecCCceEEEeccCCC
Confidence 7776554 4789999999999999874
No 145
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=2e-22 Score=175.64 Aligned_cols=235 Identities=17% Similarity=0.238 Sum_probs=187.5
Q ss_pred CeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEE
Q 015484 105 KVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVS 184 (406)
Q Consensus 105 ~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 184 (406)
.+....+.+-. .-.|++..... .++++|+..+.|+|||++.. .....+++|+..|+++.++-.+. +||+
T Consensus 70 ~Vp~~~k~~gd-~~~Cv~~~s~S-~y~~sgG~~~~Vkiwdl~~k--------l~hr~lkdh~stvt~v~YN~~De-yiAs 138 (673)
T KOG4378|consen 70 EVPRVRKLTGD-NAFCVACASQS-LYEISGGQSGCVKIWDLRAK--------LIHRFLKDHQSTVTYVDYNNTDE-YIAS 138 (673)
T ss_pred ccceeeccccc-hHHHHhhhhcc-eeeeccCcCceeeehhhHHH--------HHhhhccCCcceeEEEEecCCcc-eeEE
Confidence 34444444332 34444444444 68999999999999999862 33567889999999999999888 9999
Q ss_pred ecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-cccCCCeeE
Q 015484 185 GSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKEVNY 263 (406)
Q Consensus 185 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~ 263 (406)
++..|.|.|..+.++.....+. ......|.-+.|+|....+|.+++++|.|.+||+....+...+ ..|..+...
T Consensus 139 vs~gGdiiih~~~t~~~tt~f~-----~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~g 213 (673)
T KOG4378|consen 139 VSDGGDIIIHGTKTKQKTTTFT-----IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRG 213 (673)
T ss_pred eccCCcEEEEecccCcccccee-----cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCc
Confidence 9999999999998875433221 1123457789999988888999999999999999987776655 779999999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccccc
Q 015484 264 LSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELD 343 (406)
Q Consensus 264 i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 343 (406)
|+|+|.++.+|++.+.|..|.+||.+.... ...+. -..+...++|.++|. +|++|...|.|..||++.
T Consensus 214 icfspsne~l~vsVG~Dkki~~yD~~s~~s-~~~l~-y~~Plstvaf~~~G~-~L~aG~s~G~~i~YD~R~--------- 281 (673)
T KOG4378|consen 214 ICFSPSNEALLVSVGYDKKINIYDIRSQAS-TDRLT-YSHPLSTVAFSECGT-YLCAGNSKGELIAYDMRS--------- 281 (673)
T ss_pred ceecCCccceEEEecccceEEEeecccccc-cceee-ecCCcceeeecCCce-EEEeecCCceEEEEeccc---------
Confidence 999999998999999999999999996543 33333 356889999999995 699999999999999997
Q ss_pred ccCCCCeeEEEecCCCCCeeeEEeCCCC
Q 015484 344 AEDGPPELLFSHGGHKAKISDFSWNKND 371 (406)
Q Consensus 344 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~ 371 (406)
.+.++.....|...|++++|-|.-
T Consensus 282 ----~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 282 ----TKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ----CCCCceEeeecccceeEEEeeecc
Confidence 246677778899999999998763
No 146
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.90 E-value=4.6e-22 Score=162.21 Aligned_cols=235 Identities=19% Similarity=0.330 Sum_probs=179.9
Q ss_pred CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC-------CeEEEEeCCCccCCc---eee
Q 015484 137 SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD-------NKICLWDVSALAQDK---VID 206 (406)
Q Consensus 137 dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~---~~~ 206 (406)
|+.|.+.++...... .....+..|.+.|+.++-+|.+++.|+|+..+ ..+.||.+....... .+.
T Consensus 39 dNqVhll~~d~e~s~-----l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE 113 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSE-----LLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLE 113 (370)
T ss_pred cceeEEEEecCccch-----hhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhh
Confidence 677888777764332 22445677889999999999988778777552 247899987643321 233
Q ss_pred eeeeee-ccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc-cccc-----cccCCCeeEEEecCCC-CcEEEEEe
Q 015484 207 AMHVYE-AHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT-QQRV-----KAHEKEVNYLSFNPYN-EWVLATAS 278 (406)
Q Consensus 207 ~~~~~~-~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~-----~~~~~~v~~i~~~~~~-~~~l~~~~ 278 (406)
++..+. .+-+.|.|+.|.| ++..+++-. |..|.+|++..+.. +..+ ..+....++-+|+|.. .+.+++ .
T Consensus 114 ~v~~Ldteavg~i~cvew~P-ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t 190 (370)
T KOG1007|consen 114 CVASLDTEAVGKINCVEWEP-NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-T 190 (370)
T ss_pred HhhcCCHHHhCceeeEEEcC-CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-e
Confidence 333333 3456899999999 556665444 88999999987765 3322 2356678889999943 225554 4
Q ss_pred CCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCC
Q 015484 279 SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH 358 (406)
Q Consensus 279 ~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h 358 (406)
.|+++..||+|+.++....-.+|...|..+.|+|+.+++|++|+.||.|+|||.+. +...++.+.+|
T Consensus 191 ~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~-------------tk~pv~el~~H 257 (370)
T KOG1007|consen 191 SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRK-------------TKFPVQELPGH 257 (370)
T ss_pred CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccC-------------CCccccccCCC
Confidence 58899999999988867777889999999999999999999999999999999997 34677888999
Q ss_pred CCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 359 KAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 359 ~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
...|++++|+|....++.+||.|..|.+|....-
T Consensus 258 sHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 258 SHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSV 291 (370)
T ss_pred ceEEEEEEecCccceEEEecCCCceeEEEecccc
Confidence 9999999999987779999999999999987543
No 147
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=3.4e-22 Score=179.14 Aligned_cols=254 Identities=19% Similarity=0.304 Sum_probs=181.2
Q ss_pred eEEEEcC--CCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeC
Q 015484 119 NRARCMP--QKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV 196 (406)
Q Consensus 119 ~~i~~~p--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 196 (406)
.+..|++ ...++||.+..+|.|.++|........+ -........|...|..+.|-| |+..|++++.|.++++||+
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~e--e~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdv 129 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLE--ERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDV 129 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchh--hhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeee
Confidence 3355654 4557999999999999999887433211 112345668999999999999 6659999999999999999
Q ss_pred CCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc--------------------cc----
Q 015484 197 SALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT--------------------QQ---- 252 (406)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~--------------------~~---- 252 (406)
...... -...+.+|.+.|.+++|.|.+...|++|+.||.|.|||++.... .+
T Consensus 130 k~s~l~----G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k 205 (720)
T KOG0321|consen 130 KTSRLV----GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK 205 (720)
T ss_pred ccceee----cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence 886432 22457789999999999999999999999999999999984331 00
Q ss_pred ---cccccCCCeeE---EEecCCCCcEEEEEeC-CCcEEEEeCCCCCC-----CcE--EecCC---CCCeEEEEEcCCCC
Q 015484 253 ---RVKAHEKEVNY---LSFNPYNEWVLATASS-DTTVALFDMRKMTV-----PLH--ILSSH---TEEVFQVEWDPNHE 315 (406)
Q Consensus 253 ---~~~~~~~~v~~---i~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~-----~~~--~~~~h---~~~v~~i~~~p~~~ 315 (406)
.-+++...|.+ +.+..|.. .||+++. |+.|+|||+|.... +.. .+..| ...+.++.....|.
T Consensus 206 r~~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt 284 (720)
T KOG0321|consen 206 RIRKWKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT 284 (720)
T ss_pred cccccccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC
Confidence 01223333333 34444555 7888887 99999999997643 222 22223 33578888888888
Q ss_pred CEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCC--eeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 316 TVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAK--ISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 316 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
+++|+|. |+.|++|++..... ..++.+.++... -..-..+|++. .+++|+.|....+|.+.+-.
T Consensus 285 ~L~AsCt-D~sIy~ynm~s~s~------------sP~~~~sg~~~~sf~vks~lSpd~~-~l~SgSsd~~ayiw~vs~~e 350 (720)
T KOG0321|consen 285 YLFASCT-DNSIYFYNMRSLSI------------SPVAEFSGKLNSSFYVKSELSPDDC-SLLSGSSDEQAYIWVVSSPE 350 (720)
T ss_pred eEEEEec-CCcEEEEeccccCc------------CchhhccCcccceeeeeeecCCCCc-eEeccCCCcceeeeeecCcc
Confidence 7666666 99999999987442 223333333221 11234688998 58899999999999998764
Q ss_pred c
Q 015484 394 Y 394 (406)
Q Consensus 394 ~ 394 (406)
.
T Consensus 351 ~ 351 (720)
T KOG0321|consen 351 A 351 (720)
T ss_pred C
Confidence 3
No 148
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=1.6e-21 Score=176.29 Aligned_cols=262 Identities=18% Similarity=0.277 Sum_probs=205.2
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccc---------------------------------------
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQ--------------------------------------- 152 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~--------------------------------------- 152 (406)
.+|.+-|+++.|+|.+ ..|++++.|.++.+|...+....-
T Consensus 264 ~GHeDWV~sv~W~p~~-~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl 342 (764)
T KOG1063|consen 264 MGHEDWVYSVWWHPEG-LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL 342 (764)
T ss_pred cCcccceEEEEEccch-hhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence 3899999999999998 468889999999999876541100
Q ss_pred -----cCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCC
Q 015484 153 -----QDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKN 227 (406)
Q Consensus 153 -----~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~ 227 (406)
...+.+.....||.+.|.+++|.|.|. +|++++.|.+-|+|-.-. ++ .....+...+-|...++|++|-+ +
T Consensus 343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGe-flLsvs~DQTTRlFa~wg-~q-~~wHEiaRPQiHGyDl~c~~~vn-~ 418 (764)
T KOG1063|consen 343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGE-FLLSVSLDQTTRLFARWG-RQ-QEWHEIARPQIHGYDLTCLSFVN-E 418 (764)
T ss_pred EeccCccceeeccccccccccceeeeecCCCC-EEEEeccccceeeecccc-cc-cceeeecccccccccceeeehcc-C
Confidence 012233445678999999999999999 999999999999997652 22 22334445566888999999986 5
Q ss_pred CCEEEEEecCCcEEEEECC-------------------------------------------CCcc--------------
Q 015484 228 ENLFGSAGDDCQLMIWDLR-------------------------------------------TNQT-------------- 250 (406)
Q Consensus 228 ~~~l~~~~~dg~i~i~d~~-------------------------------------------~~~~-------------- 250 (406)
+..|++|.+...+|+|+.. ++..
T Consensus 419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~ 498 (764)
T KOG1063|consen 419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC 498 (764)
T ss_pred CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence 7888899999999999653 0000
Q ss_pred -------------------cccccccCCCeeEEEecCCCCcEEEEEeCCC-----cEEEEeCCCCCCCcEEecCCCCCeE
Q 015484 251 -------------------QQRVKAHEKEVNYLSFNPYNEWVLATASSDT-----TVALFDMRKMTVPLHILSSHTEEVF 306 (406)
Q Consensus 251 -------------------~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~h~~~v~ 306 (406)
+..+.+|.-.|++++.+|+++ ++|+++... .|++|+..+... +..+.+|.-.|+
T Consensus 499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liASaCKS~~~ehAvI~lw~t~~W~~-~~~L~~HsLTVT 576 (764)
T KOG1063|consen 499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LIASACKSSLKEHAVIRLWNTANWLQ-VQELEGHSLTVT 576 (764)
T ss_pred hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC-EEeehhhhCCccceEEEEEeccchhh-hheecccceEEE
Confidence 012245777899999999999 999988653 689999988766 678999999999
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEE
Q 015484 307 QVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQV 386 (406)
Q Consensus 307 ~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~i 386 (406)
.++|+|+++ +|++.+.|.++.+|.......... -......|..-|+++.|+|++.+ ++|++.|.+|++
T Consensus 577 ~l~FSpdg~-~LLsvsRDRt~sl~~~~~~~~~e~----------~fa~~k~HtRIIWdcsW~pde~~-FaTaSRDK~VkV 644 (764)
T KOG1063|consen 577 RLAFSPDGR-YLLSVSRDRTVSLYEVQEDIKDEF----------RFACLKAHTRIIWDCSWSPDEKY-FATASRDKKVKV 644 (764)
T ss_pred EEEECCCCc-EEEEeecCceEEeeeeecccchhh----------hhccccccceEEEEcccCcccce-eEEecCCceEEE
Confidence 999999997 699999999999999854222111 12225679999999999999996 999999999999
Q ss_pred EeCCCc
Q 015484 387 WQMTDS 392 (406)
Q Consensus 387 w~~~~~ 392 (406)
|...+.
T Consensus 645 W~~~~~ 650 (764)
T KOG1063|consen 645 WEEPDL 650 (764)
T ss_pred EeccCc
Confidence 999887
No 149
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=7.8e-22 Score=164.47 Aligned_cols=248 Identities=19% Similarity=0.337 Sum_probs=185.0
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC-CCCeEEEecCCCeEEEEeCCCccCCceeee
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF-KEGYLVSGSHDNKICLWDVSALAQDKVIDA 207 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 207 (406)
..+|++...|.|++||..+. .....++++...+..++|... +.+.+.+|+.||+|++||++.......
T Consensus 41 ~~vav~lSngsv~lyd~~tg--------~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~--- 109 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG--------QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESAR--- 109 (376)
T ss_pred eeEEEEecCCeEEEEeccch--------hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhh---
Confidence 46899999999999999883 336678889999999999875 555899999999999999998665432
Q ss_pred eeeeeccC-ccEEEEEeeCCCCCEEEEEe----cCCcEEEEECCCCcc-cccc-cccCCCeeEEEecCCCCcEEEEEeCC
Q 015484 208 MHVYEAHE-SVVEDVSWHLKNENLFGSAG----DDCQLMIWDLRTNQT-QQRV-KAHEKEVNYLSFNPYNEWVLATASSD 280 (406)
Q Consensus 208 ~~~~~~~~-~~i~~i~~~p~~~~~l~~~~----~dg~i~i~d~~~~~~-~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~d 280 (406)
..+..+. .+..+++.+. ..+++++|+ .+-.|.+||+|..+. +..+ ..|...|+++.|+|..+++|++|+.|
T Consensus 110 -~~~~~~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvD 187 (376)
T KOG1188|consen 110 -ISWTQQSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVD 187 (376)
T ss_pred -eeccCCCCCcceEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeeccc
Confidence 2333444 4666776654 567787775 467899999998776 5544 77999999999999999999999999
Q ss_pred CcEEEEeCCCCCC--CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc--------------
Q 015484 281 TTVALFDMRKMTV--PLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA-------------- 344 (406)
Q Consensus 281 g~i~vwd~~~~~~--~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------- 344 (406)
|.|.+||+..... ++.....|...|.++.|...+-.-|.+-+......+|+++...+.......
T Consensus 188 GLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~d 267 (376)
T KOG1188|consen 188 GLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCD 267 (376)
T ss_pred ceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhh
Confidence 9999999986542 344445677889999999887334778888999999999875432111000
Q ss_pred --------c---------C-CCCee---------------EEEe-cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 345 --------E---------D-GPPEL---------------LFSH-GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 345 --------~---------~-~~~~~---------------~~~~-~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
+ . ..... ...+ .+|...|.++.|...+. ++.|||+||.+.+|...
T Consensus 268 Y~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~-~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 268 YVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKND-VLYTGGEDGLLQAWKVE 346 (376)
T ss_pred heeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccc-eeeccCCCceEEEEecC
Confidence 0 0 00000 1112 23667788888987777 89999999999999963
No 150
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.90 E-value=9.8e-22 Score=163.05 Aligned_cols=312 Identities=17% Similarity=0.260 Sum_probs=213.9
Q ss_pred ChhHhhhhhcCCCCCCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCC
Q 015484 24 TPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVI 103 (406)
Q Consensus 24 ~~~ly~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~ 103 (406)
.+|.|.......-.-|.+.++|-+..... ..-+++|-. .|.+.+.++.-. .. .
T Consensus 25 ~~yk~t~~l~ed~~~~I~gv~fN~~~~~~---------e~~vfatvG----~~rvtiy~c~~d--~~------------i 77 (385)
T KOG1034|consen 25 RSYKYTNHLKEDHNKPIFGVAFNSFLGCD---------EPQVFATVG----GNRVTIYECPGD--GG------------I 77 (385)
T ss_pred cceEeeeehhccCCCccceeeeehhcCCC---------CCceEEEeC----CcEEEEEEECCc--cc------------e
Confidence 35666666665656677888885532222 122333332 256666554421 10 0
Q ss_pred CCeEEEEEeecCCceeEEEEcCC---CCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCC
Q 015484 104 PKVEIAQKIRVDGEVNRARCMPQ---KPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEG 180 (406)
Q Consensus 104 ~~~~~~~~~~h~~~v~~i~~~p~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 180 (406)
..++....-.|......++|+-+ +.-++|+|+.-|.|+|.|+.+. +....+.+|...|..+.+.|...+
T Consensus 78 r~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~--------~~~~~~~ghG~sINeik~~p~~~q 149 (385)
T KOG1034|consen 78 RLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG--------QCSKNYRGHGGSINEIKFHPDRPQ 149 (385)
T ss_pred eeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh--------hhccceeccCccchhhhcCCCCCc
Confidence 01111222246667777788753 3347888889999999999884 446789999999999999999988
Q ss_pred eEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccc-------
Q 015484 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQR------- 253 (406)
Q Consensus 181 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~------- 253 (406)
+++++|.|.+|++|++++..+... +.-..+|...|.++.|++ ++..|++++.|.+|++|++...+....
T Consensus 150 lvls~SkD~svRlwnI~~~~Cv~V---fGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~ 225 (385)
T KOG1034|consen 150 LVLSASKDHSVRLWNIQTDVCVAV---FGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITY 225 (385)
T ss_pred EEEEecCCceEEEEeccCCeEEEE---ecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhccc
Confidence 999999999999999999755332 244568999999999998 677999999999999999984321110
Q ss_pred ---------------------ccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCC-------------cEEec
Q 015484 254 ---------------------VKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVP-------------LHILS 299 (406)
Q Consensus 254 ---------------------~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-------------~~~~~ 299 (406)
-.-|...|-|+.|- |+ ++++-+.++.|..|.....++. +..+.
T Consensus 226 ~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd-~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~ 302 (385)
T KOG1034|consen 226 SPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GD-FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD 302 (385)
T ss_pred CCCCccCcCCccccccccccccccccchHHHHHHH--hh-heeecccCceEEEEecchhhhhhhccCCCccceeeeeEec
Confidence 12345556666664 55 8888888999999988432221 22333
Q ss_pred CCCCCeEEE--EEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEE
Q 015484 300 SHTEEVFQV--EWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISS 377 (406)
Q Consensus 300 ~h~~~v~~i--~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s 377 (406)
.....|.-| +|.|-++ +||.|.+.|.|.+||++..... ......+.-....|.+.+|+.++. +|+.
T Consensus 303 ~~~c~iWfirf~~d~~~~-~la~gnq~g~v~vwdL~~~ep~----------~~ttl~~s~~~~tVRQ~sfS~dgs-~lv~ 370 (385)
T KOG1034|consen 303 YPMCDIWFIRFAFDPWQK-MLALGNQSGKVYVWDLDNNEPP----------KCTTLTHSKSGSTVRQTSFSRDGS-ILVL 370 (385)
T ss_pred cCccceEEEEEeecHHHH-HHhhccCCCcEEEEECCCCCCc----------cCceEEeccccceeeeeeecccCc-EEEE
Confidence 334444444 5567776 6999999999999999984432 111222233356799999999999 7888
Q ss_pred EeCCCcEEEEeC
Q 015484 378 VADDNTVQVWQM 389 (406)
Q Consensus 378 ~~~dg~i~iw~~ 389 (406)
..+|+.|.-||.
T Consensus 371 vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 371 VCDDGTVWRWDR 382 (385)
T ss_pred EeCCCcEEEEEe
Confidence 888999998875
No 151
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.89 E-value=8.9e-21 Score=165.71 Aligned_cols=241 Identities=17% Similarity=0.273 Sum_probs=185.6
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
..|.|++|.+++. ++||..+|.|.||+.... +.......|.+.|.+++...+|. |++|+.|..|..||
T Consensus 247 k~Vl~v~F~engd--viTgDS~G~i~Iw~~~~~--------~~~k~~~aH~ggv~~L~~lr~Gt--llSGgKDRki~~Wd 314 (626)
T KOG2106|consen 247 KFVLCVTFLENGD--VITGDSGGNILIWSKGTN--------RISKQVHAHDGGVFSLCMLRDGT--LLSGGKDRKIILWD 314 (626)
T ss_pred eEEEEEEEcCCCC--EEeecCCceEEEEeCCCc--------eEEeEeeecCCceEEEEEecCcc--EeecCccceEEecc
Confidence 6799999999994 889999999999999763 22444458999999999998775 77799999999999
Q ss_pred CCCccCC-----cee-----------------------------eeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEE
Q 015484 196 VSALAQD-----KVI-----------------------------DAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLM 241 (406)
Q Consensus 196 ~~~~~~~-----~~~-----------------------------~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~ 241 (406)
-+-.+.. ... ..-....+|......++.+| +..++++++.|+.++
T Consensus 315 ~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~ 393 (626)
T KOG2106|consen 315 DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVR 393 (626)
T ss_pred ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEE
Confidence 3211000 000 00123356778888999999 678888999999999
Q ss_pred EEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEE
Q 015484 242 IWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASS 321 (406)
Q Consensus 242 i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~ 321 (406)
+|+ ..+.+.+.. -..++.|+.|+|.| .+|.|+..|...+.|..+ ...+..... ..+++.++|+|+|. +||.|
T Consensus 394 lW~--~~k~~wt~~-~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~-~~lv~~~~d-~~~ls~v~ysp~G~-~lAvg 465 (626)
T KOG2106|consen 394 LWN--DHKLEWTKI-IEDPAECADFHPSG--VVAVGTATGRWFVLDTET-QDLVTIHTD-NEQLSVVRYSPDGA-FLAVG 465 (626)
T ss_pred Ecc--CCceeEEEE-ecCceeEeeccCcc--eEEEeeccceEEEEeccc-ceeEEEEec-CCceEEEEEcCCCC-EEEEe
Confidence 999 344433332 46788999999998 699999999999999998 332444444 88999999999997 79999
Q ss_pred eCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 322 ADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 322 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
+.|+.|+||.+...+. .....-.-+..+|+.+.|+++++ ++.+-+.|-.|-.|...
T Consensus 466 s~d~~iyiy~Vs~~g~------------~y~r~~k~~gs~ithLDwS~Ds~-~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 466 SHDNHIYIYRVSANGR------------KYSRVGKCSGSPITHLDWSSDSQ-FLVSNSGDYEILYWKPS 521 (626)
T ss_pred cCCCeEEEEEECCCCc------------EEEEeeeecCceeEEeeecCCCc-eEEeccCceEEEEEccc
Confidence 9999999999987443 22222222348899999999999 58899999999999443
No 152
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.89 E-value=2.8e-21 Score=164.04 Aligned_cols=218 Identities=21% Similarity=0.368 Sum_probs=177.9
Q ss_pred eeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCce-eeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC
Q 015484 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKV-IDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC 238 (406)
Q Consensus 160 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg 238 (406)
-.+.+|+++|..++|+|.+.+.||+||.|.+|.||.+........ ..++..+.+|...|.-++|||...+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 346799999999999999888999999999999999976544332 3456778899999999999999999999999999
Q ss_pred cEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCC-CeEEEEEcCCCCCE
Q 015484 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTE-EVFQVEWDPNHETV 317 (406)
Q Consensus 239 ~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~-~v~~i~~~p~~~~~ 317 (406)
.|.+|++.+++.+.++. |...|.+++|+.+|. +|++++.|..|+|||.|.++. +..-.+|.+ .-..+.|-.++. +
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~-v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTV-VSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcE-eeecccccCCCcceeEEeccCc-e
Confidence 99999999999988887 999999999999999 999999999999999999765 666667776 356677888886 5
Q ss_pred EEEEe---CCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 318 LASSA---DDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 318 l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
+.||. .+..+-+||-.+..++ .....+.. .+.|.---|.++...+.++|-.|+.|+.|.+.+..
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP-----------~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEP-----------IALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeeccccccccceeccCcccccCc-----------ceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 55553 3788999998875543 22223332 33465566788888667777789999999998775
No 153
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=7e-22 Score=172.21 Aligned_cols=246 Identities=15% Similarity=0.272 Sum_probs=190.6
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeC
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV 196 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 196 (406)
.++.+.|.....-.+|+.+.|..|++|.-..... ....+..+.+. .-.|++...... ++++|+..++|+|||+
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~----~Vp~~~k~~gd--~~~Cv~~~s~S~-y~~sgG~~~~Vkiwdl 108 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTP----EVPRVRKLTGD--NAFCVACASQSL-YEISGGQSGCVKIWDL 108 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCC----ccceeeccccc--hHHHHhhhhcce-eeeccCcCceeeehhh
Confidence 3899999886633344555677888887665311 11112222222 334555444445 9999999999999999
Q ss_pred CCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccccc-CCCeeEEEecCCCCcEEE
Q 015484 197 SALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAH-EKEVNYLSFNPYNEWVLA 275 (406)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~l~ 275 (406)
+.... .+.+..|...|+++.++. ...+||+++..|.|.|..+.++.....+... ...|+-+.|+|..+.+|.
T Consensus 109 ~~kl~------hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~ 181 (673)
T KOG4378|consen 109 RAKLI------HRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLS 181 (673)
T ss_pred HHHHH------hhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeE
Confidence 85432 355678999999999996 7889999999999999999998877777533 456778999999998999
Q ss_pred EEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEe
Q 015484 276 TASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH 355 (406)
Q Consensus 276 ~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 355 (406)
+++.+|.|.+||.............|..+...|+|+|..+.+|++.+.|..|.+||++... ....+
T Consensus 182 ~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~--------------s~~~l 247 (673)
T KOG4378|consen 182 IASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA--------------STDRL 247 (673)
T ss_pred eeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc--------------cccee
Confidence 9999999999999987766667788999999999999999999999999999999998621 11111
Q ss_pred cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 356 GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 356 ~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.-..+...++|.++|. +|+.|...|.|..||+...
T Consensus 248 -~y~~Plstvaf~~~G~-~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 248 -TYSHPLSTVAFSECGT-YLCAGNSKGELIAYDMRST 282 (673)
T ss_pred -eecCCcceeeecCCce-EEEeecCCceEEEEecccC
Confidence 1245789999999998 6999999999999999764
No 154
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.4e-20 Score=154.85 Aligned_cols=229 Identities=19% Similarity=0.291 Sum_probs=171.2
Q ss_pred CCeEEEEEe-ecCCceeEEEEcC-CCCcEEEEEeCCCeEEEEeCCCcccccc-CCCCCceeeeCCCCCeeEEEecCCCCC
Q 015484 104 PKVEIAQKI-RVDGEVNRARCMP-QKPNLVGTKTSSCEVYVFDCAKQAEKQQ-DDCDPDLRLKGHDKEGYGLSWSPFKEG 180 (406)
Q Consensus 104 ~~~~~~~~~-~h~~~v~~i~~~p-~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~ 180 (406)
+........ .|.+.|..+.|.+ .-+.++|+++.|+++.||.-........ ..+....++......|+.|.|.|..-+
T Consensus 47 ~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlG 126 (361)
T KOG2445|consen 47 GTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLG 126 (361)
T ss_pred CceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcc
Confidence 445555444 5999999999975 3347999999999999998864333322 245556777888899999999996433
Q ss_pred -eEEEecCCCeEEEEeCCCccCCceeeeeeeee-------ccCccEEEEEeeCC--CCCEEEEEecC-----CcEEEEEC
Q 015484 181 -YLVSGSHDNKICLWDVSALAQDKVIDAMHVYE-------AHESVVEDVSWHLK--NENLFGSAGDD-----CQLMIWDL 245 (406)
Q Consensus 181 -~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~~~~~i~~i~~~p~--~~~~l~~~~~d-----g~i~i~d~ 245 (406)
.|++++.||+++||+.-.............++ .+..+..|+.|+|. ...+||.|+.+ +.+.||.-
T Consensus 127 LklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~ 206 (361)
T KOG2445|consen 127 LKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEY 206 (361)
T ss_pred eEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEe
Confidence 68999999999999976654333332222222 46678889999873 34677777765 47888876
Q ss_pred CCCc----ccccccccCCCeeEEEecCCCC---cEEEEEeCCCcEEEEeCCCCC-------------------CCcEEec
Q 015484 246 RTNQ----TQQRVKAHEKEVNYLSFNPYNE---WVLATASSDTTVALFDMRKMT-------------------VPLHILS 299 (406)
Q Consensus 246 ~~~~----~~~~~~~~~~~v~~i~~~~~~~---~~l~~~~~dg~i~vwd~~~~~-------------------~~~~~~~ 299 (406)
.... .+..+..|..+|+.|+|.|+-. .+||+++.|| |+||.++... ..+..+.
T Consensus 207 ~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~ 285 (361)
T KOG2445|consen 207 NENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD 285 (361)
T ss_pred cCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeecc
Confidence 5432 2456678999999999999632 4799999999 9999987421 1245577
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 300 SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 300 ~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
.|.+.|..+.|+-.|. +|++.+.||+|++|....
T Consensus 286 ~H~~~VWrv~wNmtGt-iLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 286 DHNGEVWRVRWNMTGT-ILSSTGDDGCVRLWKANY 319 (361)
T ss_pred CCCCceEEEEEeeeee-EEeecCCCceeeehhhhh
Confidence 8999999999999995 799999999999998765
No 155
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2e-21 Score=160.65 Aligned_cols=221 Identities=18% Similarity=0.273 Sum_probs=167.0
Q ss_pred eeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCc
Q 015484 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQ 239 (406)
Q Consensus 160 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~ 239 (406)
..+++|.+.|++++|+.+|+ +|+|++.|++|++|+++.-... ..++++... .-+..+.+.|.|+...+++++-....
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~~~-eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGK-KLATISGDRSIRLWDVRDFENK-EHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred hhhhccCCceeeeEEcCCCc-eeEEEeCCceEEEEecchhhhh-hhhHhhccc-cCCCceEEEECCCcceEEEEEccCCE
Confidence 45889999999999999999 9999999999999999863221 112222111 12356788999987888888888889
Q ss_pred EEEEECCCCcc---ccc--------c-cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEE
Q 015484 240 LMIWDLRTNQT---QQR--------V-KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQ 307 (406)
Q Consensus 240 i~i~d~~~~~~---~~~--------~-~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~ 307 (406)
+++|-+...+. ... + ..|...+..+-....+. +|++++.|..|.+|+++ +. .+..+......-+.
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k-~imsas~dt~i~lw~lk-Gq-~L~~idtnq~~n~~ 233 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK-YIMSASLDTKICLWDLK-GQ-LLQSIDTNQSSNYD 233 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCce-EEEEecCCCcEEEEecC-Cc-eeeeeccccccccc
Confidence 99998754321 111 1 34556666676666666 99999999999999999 33 37777776777788
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEE
Q 015484 308 VEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387 (406)
Q Consensus 308 i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw 387 (406)
.+.+|+|+ ++++++---.|++|.+-....-. -.....++.+.||.+.|..++|+++.. .+++.+.||+.+||
T Consensus 234 aavSP~GR-Fia~~gFTpDVkVwE~~f~kdG~------fqev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSkDG~wriw 305 (420)
T KOG2096|consen 234 AAVSPDGR-FIAVSGFTPDVKVWEPIFTKDGT------FQEVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSKDGKWRIW 305 (420)
T ss_pred eeeCCCCc-EEEEecCCCCceEEEEEeccCcc------hhhhhhhheeccchhheeeeeeCCCcc-eeEEEecCCcEEEe
Confidence 99999998 68888888889999875422100 011356788899999999999999998 69999999999999
Q ss_pred eCCCccc
Q 015484 388 QMTDSIY 394 (406)
Q Consensus 388 ~~~~~~~ 394 (406)
|.+-..-
T Consensus 306 dtdVrY~ 312 (420)
T KOG2096|consen 306 DTDVRYE 312 (420)
T ss_pred eccceEe
Confidence 9876543
No 156
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.88 E-value=1.8e-21 Score=161.43 Aligned_cols=266 Identities=17% Similarity=0.284 Sum_probs=196.4
Q ss_pred EeecCCceeEEEEcC----CCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceee--eCCCCCeeEEEecCC---CCCe
Q 015484 111 KIRVDGEVNRARCMP----QKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRL--KGHDKEGYGLSWSPF---KEGY 181 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p----~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~~~---~~~~ 181 (406)
+..|..+|..++|.+ +.+..+|+.+.+ .+.+|+...... ...+..+ ..|....+.++|+-+ +..+
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~-----ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~ 107 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGG-----IRLLQSYADEDHDESFYTCSWSYDSNTGNPF 107 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccc-----eeeeeeccCCCCCcceEEEEEEecCCCCCee
Confidence 345889999999986 445677777654 688998876431 1112222 246778888999753 3348
Q ss_pred EEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc---cccC
Q 015484 182 LVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV---KAHE 258 (406)
Q Consensus 182 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~ 258 (406)
+|+|+.-|.|+|.|+.+++.. ..+.+|...|+.|.++|...+++++++.|..|++|++++..++..+ .+|.
T Consensus 108 la~~G~~GvIrVid~~~~~~~------~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHr 181 (385)
T KOG1034|consen 108 LAAGGYLGVIRVIDVVSGQCS------KNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHR 181 (385)
T ss_pred EEeecceeEEEEEecchhhhc------cceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccccccc
Confidence 999999999999999987653 5567899999999999999999999999999999999999998777 7899
Q ss_pred CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC--------------------------Cc-EEecCCCCCeEEEEEc
Q 015484 259 KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV--------------------------PL-HILSSHTEEVFQVEWD 311 (406)
Q Consensus 259 ~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--------------------------~~-~~~~~h~~~v~~i~~~ 311 (406)
..|.++.|++++. .+++++.|.+|++|++..... |. .+-..|...|-|+.|-
T Consensus 182 deVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~ 260 (385)
T KOG1034|consen 182 DEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF 260 (385)
T ss_pred CcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH
Confidence 9999999999999 999999999999999983210 01 1234577778888887
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEE--eCCCCCcEEEEEeCCCcEEEEeC
Q 015484 312 PNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFS--WNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 312 p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~--~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
- + ++++-+.++.|..|.....++..............+..+.-....|+-+. |.|-++ +||.|...|.|.+||+
T Consensus 261 g--d-~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~la~gnq~g~v~vwdL 336 (385)
T KOG1034|consen 261 G--D-FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-MLALGNQSGKVYVWDL 336 (385)
T ss_pred h--h-heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-HHhhccCCCcEEEEEC
Confidence 4 3 58888899999999985433332211111111223333444445566555 456677 6999999999999999
Q ss_pred CCcc
Q 015484 390 TDSI 393 (406)
Q Consensus 390 ~~~~ 393 (406)
....
T Consensus 337 ~~~e 340 (385)
T KOG1034|consen 337 DNNE 340 (385)
T ss_pred CCCC
Confidence 8754
No 157
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.88 E-value=2e-19 Score=157.35 Aligned_cols=262 Identities=16% Similarity=0.303 Sum_probs=192.1
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccc----c--------------------------C--CCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQ----Q--------------------------D--DCD 157 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~----~--------------------------~--~~~ 157 (406)
+...|.+.|.+++...+| . |++|+.|..|..||-.-....+ + + +..
T Consensus 282 ~~~aH~ggv~~L~~lr~G-t-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~ 359 (626)
T KOG2106|consen 282 QVHAHDGGVFSLCMLRDG-T-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENG 359 (626)
T ss_pred EeeecCCceEEEEEecCc-c-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCC
Confidence 344899999999999999 3 6679999999999932211111 0 0 111
Q ss_pred CceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC
Q 015484 158 PDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD 237 (406)
Q Consensus 158 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d 237 (406)
......+|....+.++.+|+.+ .++|++.|+.+++|+ ..+. .+ . .....++.|+.|+|. + .+|.|+..
T Consensus 360 f~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~--~~k~--~w----t-~~~~d~~~~~~fhps-g-~va~Gt~~ 427 (626)
T KOG2106|consen 360 FTLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWN--DHKL--EW----T-KIIEDPAECADFHPS-G-VVAVGTAT 427 (626)
T ss_pred ceEEEEecccceeeEEcCCChh-heeeccCcceEEEcc--CCce--eE----E-EEecCceeEeeccCc-c-eEEEeecc
Confidence 2334567888999999999888 999999999999999 2111 11 1 123578999999994 4 88999999
Q ss_pred CcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec-CCCCCeEEEEEcCCCCC
Q 015484 238 CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILS-SHTEEVFQVEWDPNHET 316 (406)
Q Consensus 238 g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~i~~~p~~~~ 316 (406)
|...+.|.++...+..-.. ..++++++|+|+|. +||.|+.|+.|++|-+......+.... .|..+|+.+.|+++++
T Consensus 428 G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~-~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~- 504 (626)
T KOG2106|consen 428 GRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGA-FLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQ- 504 (626)
T ss_pred ceEEEEecccceeEEEEec-CCceEEEEEcCCCC-EEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCc-
Confidence 9999999998655544444 88999999999999 999999999999999877665444332 3447899999999997
Q ss_pred EEEEEeCCCcEEEEeCCCCCccccc------------------------------------ccc--c-----------CC
Q 015484 317 VLASSADDRRLMVWDLNRIGDEQLE------------------------------------LDA--E-----------DG 347 (406)
Q Consensus 317 ~l~s~~~dg~i~iwd~~~~~~~~~~------------------------------------~~~--~-----------~~ 347 (406)
+|.+-+-|-.|..|......+.... ... . ..
T Consensus 505 ~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s 584 (626)
T KOG2106|consen 505 FLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSS 584 (626)
T ss_pred eEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCC
Confidence 6999999999999943321110000 000 0 01
Q ss_pred CCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 348 PPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 348 ~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
+......+.+|.+-|++++|.-... .+++.+.|.+|..|++
T Consensus 585 ~rA~~he~~ghs~~vt~V~Fl~~d~-~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 585 PRAPSHEYGGHSSHVTNVAFLCKDS-HLISTGKDTSIMQWRL 625 (626)
T ss_pred CcccceeeccccceeEEEEEeeCCc-eEEecCCCceEEEEEe
Confidence 2223344568999999999998888 5666669999999986
No 158
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=1.5e-20 Score=155.73 Aligned_cols=254 Identities=16% Similarity=0.324 Sum_probs=178.7
Q ss_pred eeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc-C---CCCCceeee-CCCCCeeEEEec-------CCCCCeEEEe
Q 015484 118 VNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ-D---DCDPDLRLK-GHDKEGYGLSWS-------PFKEGYLVSG 185 (406)
Q Consensus 118 v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~---~~~~~~~~~-~h~~~v~~l~~~-------~~~~~~l~s~ 185 (406)
...+.|+|+| ..|++-+.|..+.+|++........ . .......++ .....|+..+|- |+.. ++++.
T Consensus 52 ~kgckWSPDG-SciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~-l~a~s 129 (406)
T KOG2919|consen 52 LKGCKWSPDG-SCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN-LFAVS 129 (406)
T ss_pred hccceeCCCC-ceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccc-eeeec
Confidence 4567899999 5677888999999999875432221 0 011111122 234567888885 3333 89999
Q ss_pred cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEEC-CCCcccccc-------ccc
Q 015484 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDL-RTNQTQQRV-------KAH 257 (406)
Q Consensus 186 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~-------~~~ 257 (406)
+.+.-|++||.-+++............ .-.+..+++|+|+ +..|+ ++....|++||+ |.|.....+ .+.
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~d-e~taAhsL~Fs~D-Geqlf-aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq 206 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQD-EYTAAHSLQFSPD-GEQLF-AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQ 206 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHH-hhhhheeEEecCC-CCeEe-ecccceEEEeeccCCCCCCcchhhhhcccccc
Confidence 999999999999987544332221111 1134568999994 55554 456689999999 665432221 233
Q ss_pred CCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCc
Q 015484 258 EKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGD 337 (406)
Q Consensus 258 ~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 337 (406)
.+.+.+++|+|....++++|+....+-||.-.. ..|+..+.+|.+.|+.++|.++|+.++..+-.|-.|..||++...
T Consensus 207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~-~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~- 284 (406)
T KOG2919|consen 207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG-RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR- 284 (406)
T ss_pred cceeeeeeccCCCCcceeeecccceeeeEecCC-CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc-
Confidence 677899999998888999999988888887665 446888999999999999999999755444468899999999844
Q ss_pred ccccccccCCCCeeEEEecCCCC-Cee--eEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 338 EQLELDAEDGPPELLFSHGGHKA-KIS--DFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~h~~-~v~--~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
.++..+..|.. .-. -+...|.++ +|++|+.||.|++||+.+
T Consensus 285 ------------~pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 285 ------------DPVYALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKD 328 (406)
T ss_pred ------------chhhhhhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCC
Confidence 33444444543 222 344568888 799999999999999987
No 159
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=2e-21 Score=171.98 Aligned_cols=268 Identities=15% Similarity=0.194 Sum_probs=197.0
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
....|...|+.+.|+|..+ .|++++.||++.+|++++..........|+.++.+|.++|.|++..+.+. .+++|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~-~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE-HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce-EEEeeccCc
Confidence 3556889999999999885 69999999999999996644444456888999999999999999999998 999999999
Q ss_pred eEEEEeCCCccCCc----eeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccc--cCCCeeE
Q 015484 190 KICLWDVSALAQDK----VIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA--HEKEVNY 263 (406)
Q Consensus 190 ~i~iwd~~~~~~~~----~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~ 263 (406)
+|+.|++....... .......+.+|...|+.+++++ ....|++++.||++++|+...... .++.. ..+.-.+
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence 99999776322111 1112356788999999999998 566688999999999999876555 33321 2233345
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC-------CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCC
Q 015484 264 LSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS-------HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIG 336 (406)
Q Consensus 264 i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-------h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 336 (406)
+++-.......++...-+.-.++++..... +..+.. ....++.+.++|..+ +.+++..|+.|+++|..+
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~-~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~hed~~Ir~~dn~~-- 520 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSD-LLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAHEDRSIRFFDNKT-- 520 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhhhhh-eeeccccCCCcccccCccceEEecCCCC-eeEecccCCceecccccc--
Confidence 555443321222222222223333332221 222211 124578899999997 799999999999999887
Q ss_pred cccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCCCc
Q 015484 337 DEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDDD 398 (406)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 398 (406)
..+++....|...++++++.|+|. .|++++.|+.+++|++....+..+-
T Consensus 521 ------------~~~l~s~~a~~~svtslai~~ng~-~l~s~s~d~sv~l~kld~k~~~~es 569 (577)
T KOG0642|consen 521 ------------GKILHSMVAHKDSVTSLAIDPNGP-YLMSGSHDGSVRLWKLDVKTCVLES 569 (577)
T ss_pred ------------cccchheeeccceecceeecCCCc-eEEeecCCceeehhhccchheeecc
Confidence 467777788999999999999999 5899999999999999877665443
No 160
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.87 E-value=1.4e-20 Score=159.82 Aligned_cols=214 Identities=18% Similarity=0.306 Sum_probs=173.6
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
.-+|+++|..++|+|.+.+.||+|+.|.+|.||++....... ....|+..|.+|...|--++|+|.-.+.|++++.|.+
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~-~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR-DLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCccccc-CcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 348999999999999888999999999999999998765443 2346788999999999999999998889999999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCC-CeeEEEecCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEK-EVNYLSFNPY 269 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~v~~i~~~~~ 269 (406)
|.+|++.++... ..+. |...|.++.|+. ++.+|++++.|..|+|||.++++.+..-.+|.+ .-..+.|-.+
T Consensus 156 v~iWnv~tgeal------i~l~-hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~ 227 (472)
T KOG0303|consen 156 VSIWNVGTGEAL------ITLD-HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLAS 227 (472)
T ss_pred EEEEeccCCcee------eecC-CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEecc
Confidence 999999998542 2233 999999999997 899999999999999999999998877766654 3345667777
Q ss_pred CCcEEEEEe---CCCcEEEEeCCCCCCCcEEecC-CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 270 NEWVLATAS---SDTTVALFDMRKMTVPLHILSS-HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 270 ~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~-h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
+. ++.+|. .+..+-+||..+...|+..... .++.|.-=-|.|+..-+.++|-.|+.|+-|.+..
T Consensus 228 g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 228 GK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred Cc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 77 555554 3678999999998887544332 2345655567888875555666899999999987
No 161
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=3.8e-20 Score=157.11 Aligned_cols=272 Identities=15% Similarity=0.185 Sum_probs=198.9
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee-CCCCCeeEEEecCCCCCeEEEecC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK-GHDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
+...+|.+.|+++.|+.++ .+||+|+.|..++||++....... ..+|+.... .|...|.|++|...+. ++++|..
T Consensus 50 KD~~~H~GCiNAlqFS~N~-~~L~SGGDD~~~~~W~~de~~~~k--~~KPI~~~~~~H~SNIF~L~F~~~N~-~~~SG~~ 125 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHND-RFLASGGDDMHGRVWNVDELMVRK--TPKPIGVMEHPHRSNIFSLEFDLENR-FLYSGER 125 (609)
T ss_pred hhhhhhccccceeeeccCC-eEEeecCCcceeeeechHHHHhhc--CCCCceeccCccccceEEEEEccCCe-eEecCCC
Confidence 4466899999999999987 799999999999999987643321 234554443 3558999999998666 9999999
Q ss_pred CCeEEEEeCCCccCCceeeeeeeee--ccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCc-cccc--ccccCCCee
Q 015484 188 DNKICLWDVSALAQDKVIDAMHVYE--AHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ-TQQR--VKAHEKEVN 262 (406)
Q Consensus 188 dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~~~~--~~~~~~~v~ 262 (406)
+++|..-|+++.+.. ..+. ...+.|..+..+|. .+.|++.+.+|.|.+||.+... .... .........
T Consensus 126 ~~~VI~HDiEt~qsi------~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~ 198 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSI------YVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFY 198 (609)
T ss_pred cceeEeeecccceee------eeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccce
Confidence 999999999986432 2222 23458999999995 7888899999999999998765 2222 233456678
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcE-------------------------------------EecC-----
Q 015484 263 YLSFNPYNEWVLATASSDTTVALFDMRKMTVPLH-------------------------------------ILSS----- 300 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-------------------------------------~~~~----- 300 (406)
++.|+|-.+.+|++.+..+-+.+||.|....++. .+..
T Consensus 199 t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~ 278 (609)
T KOG4227|consen 199 TAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRC 278 (609)
T ss_pred eeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccc
Confidence 8999999998999999999999999987532200 0001
Q ss_pred ------CC-------CCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccc---------cccccCCCCeeEEEecCC
Q 015484 301 ------HT-------EEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL---------ELDAEDGPPELLFSHGGH 358 (406)
Q Consensus 301 ------h~-------~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~---------~~~~~~~~~~~~~~~~~h 358 (406)
|. ..+.+++|..+. -+++|+.+-.|.+|.+.......- ....+......+..+.||
T Consensus 279 ~V~k~D~N~~GY~N~~T~KS~~F~~D~--~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGH 356 (609)
T KOG4227|consen 279 FVLKSDHNPNGYCNIKTIKSMTFIDDY--TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGH 356 (609)
T ss_pred eeEeccCCCCcceeeeeeeeeeeecce--eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecc
Confidence 11 124455665544 389999999999999875332211 000011122345678899
Q ss_pred CCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 359 KAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 359 ~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
...+..+.|+|... +|++.|..+.++||.......
T Consensus 357 RSv~NQVRF~~H~~-~l~SSGVE~~~KlWS~~r~P~ 391 (609)
T KOG4227|consen 357 RSVPNQVRFSQHNN-LLVSSGVENSFKLWSDHRLPW 391 (609)
T ss_pred cccccceeecCCcc-eEeccchhhheeccccccCCc
Confidence 99999999999877 899999999999998766543
No 162
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.87 E-value=2.8e-20 Score=158.60 Aligned_cols=173 Identities=19% Similarity=0.294 Sum_probs=141.1
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc-CCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ-DDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
-..+|..+.|.+...+.+|||+.|..|+||.+........ ........+..|...|+++.|+|+|. +|++|+.+|.|.
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge-lLASg~D~g~v~ 90 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE-LLASGGDGGEVF 90 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC-eeeecCCCceEE
Confidence 3478999999998866899999999999999887543221 12333556788999999999999999 999999999999
Q ss_pred EEeCCCccC----------CceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCee
Q 015484 193 LWDVSALAQ----------DKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVN 262 (406)
Q Consensus 193 iwd~~~~~~----------~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 262 (406)
+|-...-.. .........+.+|...|..++|+| ++.++++++-|..+++||+..+.....+..|...+.
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvq 169 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQ 169 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeeccccccccc
Confidence 998762110 122334466778999999999999 788999999999999999999999999999999999
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCC
Q 015484 263 YLSFNPYNEWVLATASSDTTVALFDMR 289 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~dg~i~vwd~~ 289 (406)
.++|.|.++ ++++-+.|...+.+.+.
T Consensus 170 gvawDpl~q-yv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 170 GVAWDPLNQ-YVASKSSDRHPEGFSAK 195 (434)
T ss_pred eeecchhhh-hhhhhccCcccceeeee
Confidence 999999888 78888877766665544
No 163
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=5.7e-20 Score=171.48 Aligned_cols=220 Identities=20% Similarity=0.334 Sum_probs=175.6
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
+...|.+++... ..|++|+.+++|.+|.+..... ...+...+-++.+++++.+|. +++.||.|-.|++
T Consensus 55 ~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fps~~~--------~~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~ 122 (933)
T KOG1274|consen 55 SGELVSSIACYS---NHFLTGSEQNTVLRYKFPSGEE--------DTILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKL 122 (933)
T ss_pred cCceeEEEeecc---cceEEeeccceEEEeeCCCCCc--------cceeeeeeccceEEEEecCCc-EEEeecCceeEEE
Confidence 777788887654 3699999999999999988432 334555667899999999998 9999999999999
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccc--------cCCCeeEEE
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA--------HEKEVNYLS 265 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~v~~i~ 265 (406)
-++...... ..+.+|.++|.++.|+| .+++||+.+.||.|++||+.++.....+.+ ....+..++
T Consensus 123 ~~~~D~s~~------~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~a 195 (933)
T KOG1274|consen 123 LNLDDSSQE------KVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLA 195 (933)
T ss_pred Eeccccchh------eeecccCCceeeeeEcC-CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeee
Confidence 998876543 55678999999999999 799999999999999999999877655521 145577899
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEE-ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc
Q 015484 266 FNPYNEWVLATASSDTTVALFDMRKMTVPLHI-LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 266 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 344 (406)
|+|++. .|+....|+.|++|+.......... ...+...+..++|+|.|. +||+++.||.|.|||..+...
T Consensus 196 W~Pk~g-~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~-YiAAs~~~g~I~vWnv~t~~~------- 266 (933)
T KOG1274|consen 196 WHPKGG-TLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGK-YIAASTLDGQILVWNVDTHER------- 266 (933)
T ss_pred ecCCCC-eEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCc-EEeeeccCCcEEEEecccchh-------
Confidence 999988 6777778999999999887653222 223444599999999998 599999999999999986211
Q ss_pred cCCCCeeEEEecCCCCCeeeEEeCCCCC
Q 015484 345 EDGPPELLFSHGGHKAKISDFSWNKNDP 372 (406)
Q Consensus 345 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 372 (406)
......|.+++|.|+.+
T Consensus 267 -----------~~~~~~Vc~~aw~p~~n 283 (933)
T KOG1274|consen 267 -----------HEFKRAVCCEAWKPNAN 283 (933)
T ss_pred -----------ccccceeEEEecCCCCC
Confidence 11245689999999877
No 164
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.7e-19 Score=163.08 Aligned_cols=245 Identities=16% Similarity=0.194 Sum_probs=195.5
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
-.+.|-.++|++.+ .|.+.+.+|.|.-||+.+ .++...+....+.|++++.+|.+. .++.|+.||.+..
T Consensus 68 ~drsIE~L~W~e~~--RLFS~g~sg~i~EwDl~~--------lk~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~ 136 (691)
T KOG2048|consen 68 EDRSIESLAWAEGG--RLFSSGLSGSITEWDLHT--------LKQKYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYD 136 (691)
T ss_pred CCCceeeEEEccCC--eEEeecCCceEEEEeccc--------CceeEEecCCCcceeEEEeCCccc-eEEeecCCceEEE
Confidence 44789999999766 478888999999999998 455777777889999999999888 9999999997777
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc--------cccCCCeeEEE
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV--------KAHEKEVNYLS 265 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------~~~~~~v~~i~ 265 (406)
++...+. +.....+...++.|.++.|+| .+..+++|+.||.|++||...+..+... +....-|.++.
T Consensus 137 ~s~~p~~----I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~ 211 (691)
T KOG2048|consen 137 FSIGPDK----ITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVL 211 (691)
T ss_pred EecCCce----EEEEeecccccceEEEEEecC-CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEE
Confidence 7766532 333455556678999999999 6777889999999999999988776522 11334577888
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccccccc
Q 015484 266 FNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAE 345 (406)
Q Consensus 266 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 345 (406)
+-.++ .|++|...|+|.+||...+.. ++.+..|...|.+++..+++.+ +.+++.|+.|.-|.......+
T Consensus 212 ~Lrd~--tI~sgDS~G~V~FWd~~~gTL-iqS~~~h~adVl~Lav~~~~d~-vfsaGvd~~ii~~~~~~~~~~------- 280 (691)
T KOG2048|consen 212 FLRDS--TIASGDSAGTVTFWDSIFGTL-IQSHSCHDADVLALAVADNEDR-VFSAGVDPKIIQYSLTTNKSE------- 280 (691)
T ss_pred EeecC--cEEEecCCceEEEEcccCcch-hhhhhhhhcceeEEEEcCCCCe-EEEccCCCceEEEEecCCccc-------
Confidence 87665 699999999999999998776 8888899999999999999874 889999999999888764331
Q ss_pred CCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 346 DGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 346 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
.........|...|.+++..++ .+++||.|..+.+-....
T Consensus 281 ---wv~~~~r~~h~hdvrs~av~~~---~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 281 ---WVINSRRDLHAHDVRSMAVIEN---ALISGGRDFTLAICSSRE 320 (691)
T ss_pred ---eeeeccccCCcccceeeeeecc---eEEecceeeEEEEccccc
Confidence 1222334567788999998887 788999999888766554
No 165
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.86 E-value=1.3e-19 Score=168.19 Aligned_cols=238 Identities=18% Similarity=0.300 Sum_probs=180.1
Q ss_pred CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCcc
Q 015484 138 CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESV 217 (406)
Q Consensus 138 g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 217 (406)
+.+.||++... ..|...+. -...|+++.|+|..+++++.|..+|.|.+||++.+........-.....|..+
T Consensus 222 ~~~~vW~~~~p-------~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~ 293 (555)
T KOG1587|consen 222 GVLLVWSLKNP-------NTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEP 293 (555)
T ss_pred ceEEEEecCCC-------CCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcC
Confidence 47999999983 34455554 45789999999999889999999999999999987653222112233468899
Q ss_pred EEEEEeeCCC-CCEEEEEecCCcEEEEECCCCccccc-c-----c------ccCCCeeEEEecCCCCcEEEEEeCCCcEE
Q 015484 218 VEDVSWHLKN-ENLFGSAGDDCQLMIWDLRTNQTQQR-V-----K------AHEKEVNYLSFNPYNEWVLATASSDTTVA 284 (406)
Q Consensus 218 i~~i~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~-~-----~------~~~~~v~~i~~~~~~~~~l~~~~~dg~i~ 284 (406)
+..+.|.... +.-|++++.||.|..|+++.-..... . . .....+++++|.+...+.+++|+.+|.|.
T Consensus 294 v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~ 373 (555)
T KOG1587|consen 294 VTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVY 373 (555)
T ss_pred eEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEE
Confidence 9999997521 23477899999999999875433111 1 1 22356889999999988999999999887
Q ss_pred EEeC---CCCC----CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecC
Q 015484 285 LFDM---RKMT----VPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG 357 (406)
Q Consensus 285 vwd~---~~~~----~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (406)
--+. +... .+...+..|.++|+.+.++|-+..++++++ |.+++||..... ..+++.+..
T Consensus 374 ~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~-------------~~Pl~~~~~ 439 (555)
T KOG1587|consen 374 KGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVI-------------ASPLLSLDS 439 (555)
T ss_pred EEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCC-------------CCcchhhhh
Confidence 7333 2222 224466778899999999999987777777 999999997731 244555566
Q ss_pred CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCCC
Q 015484 358 HKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDD 397 (406)
Q Consensus 358 h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 397 (406)
+...|++++|||..+.+++++..||.|.|||+......+.
T Consensus 440 ~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv 479 (555)
T KOG1587|consen 440 SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV 479 (555)
T ss_pred ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc
Confidence 7778999999999998999999999999999987765543
No 166
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.86 E-value=2.5e-19 Score=160.04 Aligned_cols=235 Identities=14% Similarity=0.127 Sum_probs=161.8
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeE-EEecCCCeEEEEeCCCccCCceeee
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYL-VSGSHDNKICLWDVSALAQDKVIDA 207 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~ 207 (406)
+++++++.|+.|++||+.+. .....+..+. .+.+++|+|++. .+ ++++.++.|++||+.+++..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~--------~~~~~~~~~~-~~~~l~~~~dg~-~l~~~~~~~~~v~~~d~~~~~~~----- 66 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATL--------EVTRTFPVGQ-RPRGITLSKDGK-LLYVCASDSDTIQVIDLATGEVI----- 66 (300)
T ss_pred cEEEEecCCCEEEEEECCCC--------ceEEEEECCC-CCCceEECCCCC-EEEEEECCCCeEEEEECCCCcEE-----
Confidence 57889999999999999763 2345555544 367899999988 55 67788999999999875432
Q ss_pred eeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCC-cEEEE
Q 015484 208 MHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT-TVALF 286 (406)
Q Consensus 208 ~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg-~i~vw 286 (406)
..+..+. .+..++|+|++..++++++.++.|++||+++.+.+..+.. ...+.+++|+|++. ++++++.++ .+.+|
T Consensus 67 -~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~ 142 (300)
T TIGR03866 67 -GTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGK-IVVNTSETTNMAHFI 142 (300)
T ss_pred -EeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCC-EEEEEecCCCeEEEE
Confidence 2222222 3567889995544555666789999999998776665542 34468899999999 777777665 57788
Q ss_pred eCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEe-cCC--CCCee
Q 015484 287 DMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH-GGH--KAKIS 363 (406)
Q Consensus 287 d~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~h--~~~v~ 363 (406)
|.++... ..... ....+..++|+|+++.+++++..++.|++||+.+....... .... ..+ .....
T Consensus 143 d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~----------~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 143 DTKTYEI-VDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKI----------TFEIPGVHPEAVQPV 210 (300)
T ss_pred eCCCCeE-EEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeee----------eecccccccccCCcc
Confidence 9876543 22222 23456789999999865566667999999999873211100 0000 001 11245
Q ss_pred eEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 364 DFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 364 ~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.++|+|++++++++.+.++.+.+||+.++..
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~ 241 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEV 241 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 6889999996566666677899999987654
No 167
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.86 E-value=2.7e-20 Score=169.08 Aligned_cols=212 Identities=19% Similarity=0.252 Sum_probs=173.8
Q ss_pred EeecCCceeEEEEcCC--CCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCC-CeEEEecC
Q 015484 111 KIRVDGEVNRARCMPQ--KPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKE-GYLVSGSH 187 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~ 187 (406)
.-.|..+|.|+.|+.. +..+||+++.|.-|.|||... ...++.++.+|...|+++.|--.|. ..+++++.
T Consensus 497 ~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r-------ny~l~qtld~HSssITsvKFa~~gln~~MiscGA 569 (1080)
T KOG1408|consen 497 MEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR-------NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGA 569 (1080)
T ss_pred eecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc-------ccchhhhhcccccceeEEEEeecCCceEEEeccC
Confidence 3469999999999862 346899999999999999987 4667889999999999999987762 27889999
Q ss_pred CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccc---ccCCCeeEE
Q 015484 188 DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK---AHEKEVNYL 264 (406)
Q Consensus 188 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~i 264 (406)
|..|. |+.........+-+.......+..+.+++..| ..+++++++.|..|+|||+..++..+.|+ .|.+....+
T Consensus 570 Dksim-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv 647 (1080)
T KOG1408|consen 570 DKSIM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKV 647 (1080)
T ss_pred chhhh-eehhccccCceeccccccccccceEEEeeeCC-CcceEEEEecccceEEEeccccceeeeecccccCCCceEEE
Confidence 98764 44433211111111122222346789999999 78899999999999999999999999885 456778889
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
...|.|- ++|+...|.++.++|+-+++. +..+.+|...|+.+.|.++-++ |++.+.||+|.||.+..
T Consensus 648 ~lDPSgi-Y~atScsdktl~~~Df~sgEc-vA~m~GHsE~VTG~kF~nDCkH-lISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 648 ILDPSGI-YLATSCSDKTLCFVDFVSGEC-VAQMTGHSEAVTGVKFLNDCKH-LISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EECCCcc-EEEEeecCCceEEEEeccchh-hhhhcCcchheeeeeecccchh-heeecCCceEEEEECch
Confidence 9999998 999999999999999999776 8899999999999999999986 88999999999999865
No 168
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.85 E-value=2.3e-20 Score=150.51 Aligned_cols=248 Identities=15% Similarity=0.180 Sum_probs=181.5
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee-CCCCCeeEEEecCCCCCeEEEecCCCeE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK-GHDKEGYGLSWSPFKEGYLVSGSHDNKI 191 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i 191 (406)
+|.+.|+++.|..++ .|.+|...|.|.+|.+++. .+...+. .|...|+.+.--|++ .|.+-+.|+.+
T Consensus 12 p~~~~v~s~~fqa~~--rL~sg~~~G~V~~w~lqt~--------r~~~~~r~~g~~~it~lq~~p~d--~l~tqgRd~~L 79 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANE--RLMSGLSVGIVKMWVLQTE--------RDLPLIRLFGRLFITNLQSIPND--SLDTQGRDPLL 79 (323)
T ss_pred cccchheehhhccch--hhhcccccceEEEEEeecC--------ccchhhhhhccceeeceeecCCc--chhhcCCCceE
Confidence 899999999999887 3889999999999999984 3344555 567889999888864 58899999999
Q ss_pred EEEeCCCccCCc---------------------eeeee--------------------ee------eeccCccEEEEEee
Q 015484 192 CLWDVSALAQDK---------------------VIDAM--------------------HV------YEAHESVVEDVSWH 224 (406)
Q Consensus 192 ~iwd~~~~~~~~---------------------~~~~~--------------------~~------~~~~~~~i~~i~~~ 224 (406)
.+|++.-..... ....+ +. -.+..+.+.+..+.
T Consensus 80 ~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~ 159 (323)
T KOG0322|consen 80 ILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD 159 (323)
T ss_pred EEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence 999987521100 00000 00 00112334444432
Q ss_pred CCC--CCEEEEEecCCcEEEEECCCCc----------ccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC
Q 015484 225 LKN--ENLFGSAGDDCQLMIWDLRTNQ----------TQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT 292 (406)
Q Consensus 225 p~~--~~~l~~~~~dg~i~i~d~~~~~----------~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 292 (406)
-.. .-++++|.++|.+.+||+.++. .......|..+|.++.+.+.-. .=++|+.+..+..|.+....
T Consensus 160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~-rGisgga~dkl~~~Sl~~s~ 238 (323)
T KOG0322|consen 160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD-RGISGGADDKLVMYSLNHST 238 (323)
T ss_pred ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc-CCcCCCccccceeeeecccc
Confidence 212 2356778899999999999873 3334467899999999987544 34667777788899886432
Q ss_pred --CCc-EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCC
Q 015484 293 --VPL-HILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNK 369 (406)
Q Consensus 293 --~~~-~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 369 (406)
.++ .........|..+..-|+++ ++||++.|+.|+||..++ ...+..+.-|.+.|.+++|+|
T Consensus 239 gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrt--------------l~pLAVLkyHsagvn~vAfsp 303 (323)
T KOG0322|consen 239 GSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRT--------------LNPLAVLKYHSAGVNAVAFSP 303 (323)
T ss_pred CcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEecc--------------CCchhhhhhhhcceeEEEeCC
Confidence 211 12223345688999999997 899999999999999998 455666778999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeC
Q 015484 370 NDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 370 ~~~~~l~s~~~dg~i~iw~~ 389 (406)
+.+ ++|+++.|+.|.+|++
T Consensus 304 d~~-lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 304 DCE-LMAAASKDARISLWKL 322 (323)
T ss_pred CCc-hhhhccCCceEEeeec
Confidence 987 8999999999999986
No 169
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.84 E-value=2e-19 Score=162.98 Aligned_cols=261 Identities=16% Similarity=0.259 Sum_probs=201.8
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
.-+|.+.|..+.|.|.| .+|++.+.|-+-|||-.-..+ ..+..+..-+-|....+|+++-+..- .+++|.....
T Consensus 357 iSGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg~q----~~wHEiaRPQiHGyDl~c~~~vn~~~-~FVSgAdEKV 430 (764)
T KOG1063|consen 357 ISGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARWGRQ----QEWHEIARPQIHGYDLTCLSFVNEDL-QFVSGADEKV 430 (764)
T ss_pred cccccccceeeeecCCC-CEEEEeccccceeeecccccc----cceeeecccccccccceeeehccCCc-eeeeccccee
Confidence 34799999999999999 578888999999998766211 12444555567888999999988544 7999999999
Q ss_pred EEEEeCCCc-------------------------------------------cC--------------------------
Q 015484 191 ICLWDVSAL-------------------------------------------AQ-------------------------- 201 (406)
Q Consensus 191 i~iwd~~~~-------------------------------------------~~-------------------------- 201 (406)
+|+|+.... ..
T Consensus 431 lRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq 510 (764)
T KOG1063|consen 431 LRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQ 510 (764)
T ss_pred eeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHH
Confidence 999986531 00
Q ss_pred -CceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC-----CcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEE
Q 015484 202 -DKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD-----CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLA 275 (406)
Q Consensus 202 -~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~ 275 (406)
...++..+++-+|...|.+++.+| +++++|+++.. ..|++|+..+-..++.+..|.-.|+.++|+|++. +|+
T Consensus 511 ~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~-~LL 588 (764)
T KOG1063|consen 511 QNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGR-YLL 588 (764)
T ss_pred HhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCc-EEE
Confidence 000011244567899999999999 78999998754 3599999998888888999999999999999999 999
Q ss_pred EEeCCCcEEEEeCCCCCCC---cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeE
Q 015484 276 TASSDTTVALFDMRKMTVP---LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELL 352 (406)
Q Consensus 276 ~~~~dg~i~vwd~~~~~~~---~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (406)
+.+.|+++.+|........ ....+.|+.-|.++.|+|++.+ ++|+|.|.+|++|......... ...
T Consensus 589 svsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~-FaTaSRDK~VkVW~~~~~~d~~----------i~~ 657 (764)
T KOG1063|consen 589 SVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKY-FATASRDKKVKVWEEPDLRDKY----------ISR 657 (764)
T ss_pred EeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccce-eEEecCCceEEEEeccCchhhh----------hhh
Confidence 9999999999988654332 3347789999999999999975 9999999999999987632100 011
Q ss_pred EEecCCCCCeeeEEeCCC----CCcEEEEEeCCCcEEEEeCC
Q 015484 353 FSHGGHKAKISDFSWNKN----DPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 353 ~~~~~h~~~v~~~~~s~~----~~~~l~s~~~dg~i~iw~~~ 390 (406)
+....+...|+.++|.|- ..++++.|-+.|.|.+|...
T Consensus 658 ~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 658 FACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred hchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 122346778999999773 22488999999999999966
No 170
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.84 E-value=1.6e-19 Score=162.07 Aligned_cols=243 Identities=15% Similarity=0.259 Sum_probs=181.5
Q ss_pred EeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCC-ceeeeeeeee
Q 015484 134 KTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQD-KVIDAMHVYE 212 (406)
Q Consensus 134 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~ 212 (406)
.+..|.|.||++......+.+.. -.+ .....|+.+.|.|.+...|+.++.||.|++|.+..+... ....+...+.
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~---p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt 674 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVM---PGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILT 674 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccc---ccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeee
Confidence 34578999999998654432111 111 245679999999988879999999999999999875443 2344556778
Q ss_pred ccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC
Q 015484 213 AHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT 292 (406)
Q Consensus 213 ~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 292 (406)
.|...|+++.|+|-..++|++++.|-+|++||+++++....+.+|.+.|..++|+|+|+ .+|+.+.||+|++|..|+..
T Consensus 675 ~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr-~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 675 IHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGR-RIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred cccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCc-ceeeeecCceEEEeCCCCCC
Confidence 89999999999998899999999999999999999999999999999999999999999 99999999999999999988
Q ss_pred CCcEEecCCC-CCeEEEEEcCCCCCEEEEEeC---CCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeC
Q 015484 293 VPLHILSSHT-EEVFQVEWDPNHETVLASSAD---DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWN 368 (406)
Q Consensus 293 ~~~~~~~~h~-~~v~~i~~~p~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 368 (406)
.++..-.+.. ..-..|.|.-+|+.++++|-. ...|.+||....... +.....+.... .+.--.+.
T Consensus 754 ~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~----------pl~t~~lDvap-s~LvP~YD 822 (1012)
T KOG1445|consen 754 QPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLR----------PLYTQVLDVAP-SPLVPHYD 822 (1012)
T ss_pred CccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCC----------cceeeeecccC-cccccccc
Confidence 8877655433 244678888899865555532 356888887653210 11111111100 11112345
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 369 KNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 369 ~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
++...++++|-.|..|.+|.+-..
T Consensus 823 ~Ds~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 823 YDSNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred CCCceEEEecCCCceEEEEEecCC
Confidence 566668899999999999987543
No 171
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.3e-18 Score=138.84 Aligned_cols=246 Identities=14% Similarity=0.198 Sum_probs=174.7
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc--CCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEE
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ--DDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLW 194 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 194 (406)
.|.+-+++|.+ .+|++|..+|+|.++.+........ ....++...++|.++|+.++|. +. +|++|+ ||.|+-|
T Consensus 12 tvf~qa~sp~~-~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~-~Lls~g-dG~V~gw 86 (325)
T KOG0649|consen 12 TVFAQAISPSK-QYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DD-FLLSGG-DGLVYGW 86 (325)
T ss_pred HHHHHhhCCcc-eEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hh-heeecc-CceEEEe
Confidence 46667889988 6899999999999999876432211 2334456668999999999998 34 788876 5999999
Q ss_pred eCCCccCCceee-------eeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEec
Q 015484 195 DVSALAQDKVID-------AMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFN 267 (406)
Q Consensus 195 d~~~~~~~~~~~-------~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~ 267 (406)
..+........+ +.+.-...--.|+++-..|..+.+|.+| .|+.++.||+++|+....+++|+..|.++.-.
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R 165 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGR 165 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEcCCcceeeeeeec
Confidence 876543311111 1111111223588899999777776555 79999999999999999999999999999884
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC---------CC-CCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCc
Q 015484 268 PYNEWVLATASSDTTVALFDMRKMTVPLHILSS---------HT-EEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGD 337 (406)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---------h~-~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 337 (406)
.... .+++|+.||++++||.++.+. +..+.. |- ..|.+++-+. . .|++|+ ...+.+|.++...
T Consensus 166 ~~~~-qilsG~EDGtvRvWd~kt~k~-v~~ie~yk~~~~lRp~~g~wigala~~e--d-WlvCGg-Gp~lslwhLrsse- 238 (325)
T KOG0649|consen 166 NANG-QILSGAEDGTVRVWDTKTQKH-VSMIEPYKNPNLLRPDWGKWIGALAVNE--D-WLVCGG-GPKLSLWHLRSSE- 238 (325)
T ss_pred ccCc-ceeecCCCccEEEEeccccce-eEEeccccChhhcCcccCceeEEEeccC--c-eEEecC-CCceeEEeccCCC-
Confidence 4344 599999999999999999765 444332 22 2355665443 3 355444 6689999999843
Q ss_pred ccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 338 EQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
...++.+.+ .|..+.|..+ .+++++..+.|.-|.++.-
T Consensus 239 -----------~t~vfpipa---~v~~v~F~~d---~vl~~G~g~~v~~~~l~Gv 276 (325)
T KOG0649|consen 239 -----------STCVFPIPA---RVHLVDFVDD---CVLIGGEGNHVQSYTLNGV 276 (325)
T ss_pred -----------ceEEEeccc---ceeEeeeecc---eEEEeccccceeeeeeccE
Confidence 345555554 4777788766 6778888888998887654
No 172
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=5.6e-19 Score=146.05 Aligned_cols=199 Identities=13% Similarity=0.261 Sum_probs=156.0
Q ss_pred eeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC
Q 015484 169 GYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN 248 (406)
Q Consensus 169 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~ 248 (406)
..|+.|++.|. +||.|+.||.|.|||+.+... .+.+.+|..+|.+++|++ +++.|++++.|..|.+||+..|
T Consensus 26 a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~i------ar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~g 97 (405)
T KOG1273|consen 26 AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRI------ARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKG 97 (405)
T ss_pred cceEEeccCcc-eeeeeccCCcEEEEEccccch------hhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCC
Confidence 78999999999 999999999999999988653 355678999999999999 7888899999999999999999
Q ss_pred cccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC---CCCCeEEEEEcCCCCCEEEEEeCCC
Q 015484 249 QTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS---HTEEVFQVEWDPNHETVLASSADDR 325 (406)
Q Consensus 249 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---h~~~v~~i~~~p~~~~~l~s~~~dg 325 (406)
.+++.+. ..++|....|+|...+.+++.-.+..-.+.++..+...+..... -...-.+..|.+.|+ ++++|...|
T Consensus 98 s~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~-yIitGtsKG 175 (405)
T KOG1273|consen 98 SPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK-YIITGTSKG 175 (405)
T ss_pred CceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCC-EEEEecCcc
Confidence 9888886 68899999999987766666666666666666643221111111 011223346889997 599999999
Q ss_pred cEEEEeCCCCCcccccccccCCCCeeEEEecCCC-CCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 326 RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHK-AKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 326 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.+.++|..+ .+++..++-.. ..|..+.++..|+ +|+.-+.|..||.|++.+-
T Consensus 176 kllv~~a~t--------------~e~vas~rits~~~IK~I~~s~~g~-~liiNtsDRvIR~ye~~di 228 (405)
T KOG1273|consen 176 KLLVYDAET--------------LECVASFRITSVQAIKQIIVSRKGR-FLIINTSDRVIRTYEISDI 228 (405)
T ss_pred eEEEEecch--------------heeeeeeeechheeeeEEEEeccCc-EEEEecCCceEEEEehhhh
Confidence 999999987 34444444333 6789999999999 6778888999999998743
No 173
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.83 E-value=2.3e-18 Score=159.24 Aligned_cols=262 Identities=20% Similarity=0.240 Sum_probs=206.4
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
....+|.+.|.-+. |-| ..++++..++.+.||+........ ......++...+.|+++.--+.--+.++.|+.+
T Consensus 108 ~~~~~~~a~v~~l~--~fG-e~lia~d~~~~l~vw~~s~~~~e~---~l~~~~~~~~~~~Ital~HP~TYLNKIvvGs~~ 181 (910)
T KOG1539|consen 108 HTTLLHGAKVHLLL--PFG-EHLIAVDISNILFVWKTSSIQEEL---YLQSTFLKVEGDFITALLHPSTYLNKIVVGSSQ 181 (910)
T ss_pred EEeccccceEEEEe--eec-ceEEEEEccCcEEEEEeccccccc---cccceeeeccCCceeeEecchhheeeEEEeecC
Confidence 33445666666654 445 357777889999999998842110 111222333333488875433333479999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
|.+.+|++++++. +..++++...|+++.-+| -=..++.|..+|.|.+++++.++.+.+++...+.|++++|..
T Consensus 182 G~lql~Nvrt~K~------v~~f~~~~s~IT~ieqsP-aLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrt 254 (910)
T KOG1539|consen 182 GRLQLWNVRTGKV------VYTFQEFFSRITAIEQSP-ALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRT 254 (910)
T ss_pred CcEEEEEeccCcE------EEEecccccceeEeccCC-cceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEecc
Confidence 9999999998753 577888889999999888 578899999999999999999999999985569999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGP 348 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 348 (406)
+|+.++++|+..|.+.+||+...+........|.+.|..+.|.|..+ ++++++.|+.+++|=..+ .++.
T Consensus 255 DG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk~~vfD~----------~dg~ 323 (910)
T KOG1539|consen 255 DGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP-VLVTAGADNSLKVWVFDS----------GDGV 323 (910)
T ss_pred CCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc-eEeeccCCCceeEEEeeC----------CCCc
Confidence 99989999999999999999986654455568999999999999887 799999999999997764 3455
Q ss_pred CeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 349 PELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 349 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
++++....||..+..+++|.....+.+.+++.|++++.+.+.....
T Consensus 324 pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~ 369 (910)
T KOG1539|consen 324 PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQ 369 (910)
T ss_pred chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHH
Confidence 7889999999999999999844334789999999999988765544
No 174
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=7.6e-18 Score=144.77 Aligned_cols=198 Identities=17% Similarity=0.284 Sum_probs=149.9
Q ss_pred eEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCc
Q 015484 170 YGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ 249 (406)
Q Consensus 170 ~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 249 (406)
.+++|+.+|. .|++|+.||++|+|+...... +.....|.+.|.++.|+| ++.+|++.+.| ..++|+++++.
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t------~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~ 218 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLT------ILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGA 218 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcchh------hhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCc
Confidence 6899999988 999999999999999765432 234456889999999999 78999999999 89999999997
Q ss_pred cccccc--ccCCCeeEEEecCCC---CcEEEE-EeCCCcEEEEeCCCCCC----CcEEecCCCCCeEEEEEcCCCCCEEE
Q 015484 250 TQQRVK--AHEKEVNYLSFNPYN---EWVLAT-ASSDTTVALFDMRKMTV----PLHILSSHTEEVFQVEWDPNHETVLA 319 (406)
Q Consensus 250 ~~~~~~--~~~~~v~~i~~~~~~---~~~l~~-~~~dg~i~vwd~~~~~~----~~~~~~~h~~~v~~i~~~p~~~~~l~ 319 (406)
.+.... ........+.|+.++ ..++++ ...-+.|+.||+..... +..........|++++.+++|+ +++
T Consensus 219 ~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk-f~A 297 (398)
T KOG0771|consen 219 ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK-FLA 297 (398)
T ss_pred hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCc-EEE
Confidence 666553 223345566776655 222333 23345677777654332 2333333345799999999997 799
Q ss_pred EEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 320 SSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 320 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
.|+.||.|.|++..... .+.+....|...|+.+.|+|+.++ +++.+.|...++..+.-
T Consensus 298 lGT~dGsVai~~~~~lq-------------~~~~vk~aH~~~VT~ltF~Pdsr~-~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 298 LGTMDGSVAIYDAKSLQ-------------RLQYVKEAHLGFVTGLTFSPDSRY-LASVSSDNEAAVTKLAV 355 (398)
T ss_pred EeccCCcEEEEEeceee-------------eeEeehhhheeeeeeEEEcCCcCc-ccccccCCceeEEEEee
Confidence 99999999999998732 445566789999999999999995 77888899998888765
No 175
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=5.2e-19 Score=156.36 Aligned_cols=228 Identities=20% Similarity=0.275 Sum_probs=168.2
Q ss_pred ceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCC-CCCEEEEEecC
Q 015484 159 DLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLK-NENLFGSAGDD 237 (406)
Q Consensus 159 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~-~~~~l~~~~~d 237 (406)
...+.||++.|.|++|+.+|. +|++||.|-.+.|||.-..+... ..-.+|...|.++.|-|. ++.++++|..|
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllh-----sI~TgHtaNIFsvKFvP~tnnriv~sgAgD 116 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLH-----SISTGHTANIFSVKFVPYTNNRIVLSGAGD 116 (758)
T ss_pred hhhhccccceecceeecCCCC-EEeecCCcceEEeecchhcceee-----eeecccccceeEEeeeccCCCeEEEeccCc
Confidence 456899999999999999999 99999999999999987543221 233579999999999984 46678899999
Q ss_pred CcEEEEECCCC----------cccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEe---------
Q 015484 238 CQLMIWDLRTN----------QTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHIL--------- 298 (406)
Q Consensus 238 g~i~i~d~~~~----------~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------- 298 (406)
..|+++|+... .....+..|...|..|+-.|.+++.+.+++.||+|+-+|+|.....-...
T Consensus 117 k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny 196 (758)
T KOG1310|consen 117 KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNY 196 (758)
T ss_pred ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHh
Confidence 99999999842 22344577889999999999998899999999999999999754221111
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC-CCC---eeE-EEecCCC-----------CCe
Q 015484 299 SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED-GPP---ELL-FSHGGHK-----------AKI 362 (406)
Q Consensus 299 ~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~---~~~-~~~~~h~-----------~~v 362 (406)
...--...++..+|..+++|+.|+.|--.++||.+..-+......... .++ .++ +...+|. ..+
T Consensus 197 ~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~ 276 (758)
T KOG1310|consen 197 NPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCC 276 (758)
T ss_pred chhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeee
Confidence 112235678999999999999999999999999655433322222211 111 011 1112222 125
Q ss_pred eeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 363 SDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 363 ~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
+-+.|+|+|.-+|++-+.+ .|+++++..+.
T Consensus 277 t~vtfnpNGtElLvs~~gE-hVYlfdvn~~~ 306 (758)
T KOG1310|consen 277 TYVTFNPNGTELLVSWGGE-HVYLFDVNEDK 306 (758)
T ss_pred EEEEECCCCcEEEEeeCCe-EEEEEeecCCC
Confidence 6788999998778777644 69999998763
No 176
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.82 E-value=9.8e-18 Score=139.07 Aligned_cols=208 Identities=20% Similarity=0.268 Sum_probs=167.7
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
...+|+|.+|++++ ..+|++.....|.||...... .+.+.+++..|...|++|+|+|..+ .|++++.|..-.+
T Consensus 9 ~~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~-----~w~~~htls~Hd~~vtgvdWap~sn-rIvtcs~drnayV 81 (361)
T KOG1523|consen 9 LLEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGAD-----LWEPAHTLSEHDKIVTGVDWAPKSN-RIVTCSHDRNAYV 81 (361)
T ss_pred ccCceeeeeecCCC-ceEEeccCCceEEEEEecCCC-----CceeceehhhhCcceeEEeecCCCC-ceeEccCCCCccc
Confidence 35789999999999 579999999999999988742 2777899999999999999999887 9999999999999
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccc----ccccccCCCeeEEEecCC
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ----QRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~v~~i~~~~~ 269 (406)
|....+. ..++.-.+..+...++++.|+| ..+.||+|+.-..|.+|=.+..+.- ..-+.+.+.|++++|+|+
T Consensus 82 w~~~~~~---~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn 157 (361)
T KOG1523|consen 82 WTQPSGG---TWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN 157 (361)
T ss_pred cccCCCC---eeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC
Confidence 9985432 2334444556888999999999 7889999999999999987765432 122456788999999999
Q ss_pred CCcEEEEEeCCCcEEEEeC-----CCCC--------CC----cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 015484 270 NEWVLATASSDTTVALFDM-----RKMT--------VP----LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDL 332 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~-----~~~~--------~~----~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~ 332 (406)
+- +|++|+.|+..+||.. .... .| +..+....+.|..+.|+|.|. .|+-.+.|+++.+-|.
T Consensus 158 nV-LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~-~lawv~Hds~v~~~da 235 (361)
T KOG1523|consen 158 NV-LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN-RLAWVGHDSTVSFVDA 235 (361)
T ss_pred cc-eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC-EeeEecCCCceEEeec
Confidence 98 9999999999999853 1111 11 233335567899999999998 5888999999999988
Q ss_pred CC
Q 015484 333 NR 334 (406)
Q Consensus 333 ~~ 334 (406)
..
T Consensus 236 ~~ 237 (361)
T KOG1523|consen 236 AG 237 (361)
T ss_pred CC
Confidence 76
No 177
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.81 E-value=2.3e-16 Score=142.78 Aligned_cols=264 Identities=12% Similarity=0.152 Sum_probs=166.5
Q ss_pred CeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEE
Q 015484 105 KVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVS 184 (406)
Q Consensus 105 ~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 184 (406)
++...+.+.+.+....++++|+++.+++++..++.|.+|++.... ......... .......++++|+++ +|++
T Consensus 24 ~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g-----~l~~~~~~~-~~~~p~~i~~~~~g~-~l~v 96 (330)
T PRK11028 24 ALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG-----ALTFAAESP-LPGSPTHISTDHQGR-FLFS 96 (330)
T ss_pred ceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCC-----ceEEeeeec-CCCCceEEEECCCCC-EEEE
Confidence 455666777778899999999996545555568889999997311 111111111 223456899999998 6666
Q ss_pred ec-CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccc-----cc-cc
Q 015484 185 GS-HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQR-----VK-AH 257 (406)
Q Consensus 185 ~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~-~~ 257 (406)
++ .++.|.+|++++..... ....... +......++++|++..++++...++.|.+||+.+...+.. .. ..
T Consensus 97 ~~~~~~~v~v~~~~~~g~~~--~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~ 173 (330)
T PRK11028 97 ASYNANCVSVSPLDKDGIPV--APIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE 173 (330)
T ss_pred EEcCCCeEEEEEECCCCCCC--Cceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC
Confidence 55 48999999997432111 1112221 2234677889995555556666789999999986432211 11 12
Q ss_pred CCCeeEEEecCCCCcEEEEEe-CCCcEEEEeCCCCCC---CcEEecC------CCCCeEEEEEcCCCCCEEEEEeCCCcE
Q 015484 258 EKEVNYLSFNPYNEWVLATAS-SDTTVALFDMRKMTV---PLHILSS------HTEEVFQVEWDPNHETVLASSADDRRL 327 (406)
Q Consensus 258 ~~~v~~i~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~---~~~~~~~------h~~~v~~i~~~p~~~~~l~s~~~dg~i 327 (406)
......+.|+|+++ +++++. .++.|.+||+..... .+..+.. +......+.++|++++++++...++.|
T Consensus 174 g~~p~~~~~~pdg~-~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I 252 (330)
T PRK11028 174 GAGPRHMVFHPNQQ-YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLI 252 (330)
T ss_pred CCCCceEEECCCCC-EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeE
Confidence 34467899999999 555555 488999999974211 1222221 112344689999998644444558899
Q ss_pred EEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 328 MVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 328 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
.+|++...+.. ..++..... ......+.++|+|++++++...++.|.+|+++
T Consensus 253 ~v~~i~~~~~~----------~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 253 SVFSVSEDGSV----------LSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEEEeCCCCe----------EEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 99999653211 112222111 12456789999999766666669999999875
No 178
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.5e-18 Score=145.06 Aligned_cols=195 Identities=18% Similarity=0.316 Sum_probs=153.8
Q ss_pred eEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCC-CCCEEEEEecCCcEEEEECCCCcccccc--ccc
Q 015484 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLK-NENLFGSAGDDCQLMIWDLRTNQTQQRV--KAH 257 (406)
Q Consensus 181 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~ 257 (406)
.+|++-..|.|++||..+++. +..++++...++.+.|... .++.+.+++.||.|++||+|.......+ ..+
T Consensus 42 ~vav~lSngsv~lyd~~tg~~------l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~ 115 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQL------LEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQ 115 (376)
T ss_pred eEEEEecCCeEEEEeccchhh------hheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCC
Confidence 788898999999999988643 3667788888899998753 6788999999999999999987665554 333
Q ss_pred C-CCeeEEEecCCCCcEEEEEeC----CCcEEEEeCCCCCCCcE-EecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 015484 258 E-KEVNYLSFNPYNEWVLATASS----DTTVALFDMRKMTVPLH-ILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWD 331 (406)
Q Consensus 258 ~-~~v~~i~~~~~~~~~l~~~~~----dg~i~vwd~~~~~~~~~-~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd 331 (406)
. .+..+++.+-.+. ++++|+. +-.|.+||+|+..+++. ....|...|++++|+|..+.+|++|+.||.|.|||
T Consensus 116 ~~~~f~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD 194 (376)
T KOG1188|consen 116 SGTPFICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFD 194 (376)
T ss_pred CCCcceEeeccCcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeee
Confidence 3 4667777765666 7888764 55899999999877544 45689999999999999999999999999999999
Q ss_pred CCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 332 LNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
+....++ ..++.. -.|...|..+.|..++-..|.+-+..+...+|+++.+.
T Consensus 195 ~~~d~Ee----------DaL~~v-iN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 195 TKKDNEE----------DALLHV-INHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred cCCCcch----------hhHHHh-hcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 9874221 122323 34677799999998873247777889999999999875
No 179
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.81 E-value=1.1e-17 Score=151.19 Aligned_cols=244 Identities=16% Similarity=0.219 Sum_probs=179.6
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeC
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV 196 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 196 (406)
.|+.++|-|+|..+++.+ +..+.|||..++ ....++++|.+.|++++|+.+|+ .+++|+.|..|.+|.-
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG--------~llqtLKgHKDtVycVAys~dGk-rFASG~aDK~VI~W~~ 82 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDG--------TLLQPLKGHKDTVYCVAYAKDGK-RFASGSADKSVIIWTS 82 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCc--------ccccccccccceEEEEEEccCCc-eeccCCCceeEEEecc
Confidence 799999999997655544 446999999984 33778999999999999999999 9999999999999986
Q ss_pred CCccCC-----ceeeeee------------------------eeecc--CccEEEEEeeCCCCCEEEEEecCCcEEEEEC
Q 015484 197 SALAQD-----KVIDAMH------------------------VYEAH--ESVVEDVSWHLKNENLFGSAGDDCQLMIWDL 245 (406)
Q Consensus 197 ~~~~~~-----~~~~~~~------------------------~~~~~--~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~ 245 (406)
.-.... ..++++. ....| ...+.+++|.. ++.+|+.|-.+|+|.+-+-
T Consensus 83 klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtn-DGqylalG~~nGTIsiRNk 161 (1081)
T KOG1538|consen 83 KLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTN-DGQYLALGMFNGTISIRNK 161 (1081)
T ss_pred cccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecC-CCcEEEEeccCceEEeecC
Confidence 532110 1111110 00111 24567777875 7889999999999998763
Q ss_pred CCCcccccc---cccCCCeeEEEecCCCC----cEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEE
Q 015484 246 RTNQTQQRV---KAHEKEVNYLSFNPYNE----WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVL 318 (406)
Q Consensus 246 ~~~~~~~~~---~~~~~~v~~i~~~~~~~----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l 318 (406)
+++....+ .+.+++|.+++|+|... ..+++.....++.+|.+.... +..-..-.-...|+.+.|+|++ +
T Consensus 162 -~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~--Igk~r~L~FdP~CisYf~NGEy-~ 237 (1081)
T KOG1538|consen 162 -NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ--IGKDRALNFDPCCISYFTNGEY-I 237 (1081)
T ss_pred -CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee--ecccccCCCCchhheeccCCcE-E
Confidence 34443333 44788999999999632 368888888888888776421 2222222334678999999985 7
Q ss_pred EEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 319 ASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 319 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
+.|+.|+.+.+|--.. ..+-+.......|+.++..|+++ .++.|+.||+|..|++...
T Consensus 238 LiGGsdk~L~~fTR~G---------------vrLGTvg~~D~WIWtV~~~PNsQ-~v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 238 LLGGSDKQLSLFTRDG---------------VRLGTVGEQDSWIWTVQAKPNSQ-YVVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred EEccCCCceEEEeecC---------------eEEeeccccceeEEEEEEccCCc-eEEEEEccCeeehhhhHHh
Confidence 7888899999997553 45555556678999999999999 5889999999999987654
No 180
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.80 E-value=2.8e-17 Score=158.00 Aligned_cols=282 Identities=14% Similarity=0.175 Sum_probs=190.1
Q ss_pred EEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec
Q 015484 107 EIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS 186 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 186 (406)
.+.....|+..|..++.++....++++|+.||+|++|+........ +..+...++..-...+.++...+.+. .+|.++
T Consensus 1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~rS~ltys~~~sr~~~vt~~~~~~-~~Av~t 1117 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSARSELTYSPEGSRVEKVTMCGNGD-QFAVST 1117 (1431)
T ss_pred EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ceeeeeEEEeccCCceEEEEeccCCC-eEEEEc
Confidence 3455667999999999998776799999999999999998754332 22333445554567899999998888 999999
Q ss_pred CCCeEEEEeCCCccCCc-eeeeeeeeec--cCccEEEEEeeCCCCC-EEEEEecCCcEEEEECCCCcccccc--cccCCC
Q 015484 187 HDNKICLWDVSALAQDK-VIDAMHVYEA--HESVVEDVSWHLKNEN-LFGSAGDDCQLMIWDLRTNQTQQRV--KAHEKE 260 (406)
Q Consensus 187 ~dg~i~iwd~~~~~~~~-~~~~~~~~~~--~~~~i~~i~~~p~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~ 260 (406)
.||.|++.+++.....+ ...+...... ....|..-+|...... .++.+..-+.|..||++......++ ....+.
T Consensus 1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGL 1197 (1431)
T ss_pred CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccc
Confidence 99999999998732211 1111111111 1223333344433344 7888889999999999987765555 334678
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCC--CEEEEEe--CCCcEEEEeCCCCC
Q 015484 261 VNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHE--TVLASSA--DDRRLMVWDLNRIG 336 (406)
Q Consensus 261 v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~--~~l~s~~--~dg~i~iwd~~~~~ 336 (406)
|++++.+|.+. .+++|+..|.+.+||+|-.........++..++..+..+|..+ ...++++ ..+.|.+|++.++.
T Consensus 1198 vTSi~idp~~~-WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1198 VTSIVIDPWCN-WLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred eeEEEecCCce-EEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 99999999998 8999999999999999975543344456678899998888655 3444444 57889999998864
Q ss_pred cccccccccCCCCeeEEEec------CCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 337 DEQLELDAEDGPPELLFSHG------GHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~------~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
... .....++.+.+..... .+.-......+...+. ++.+|+.|..|+.||.....
T Consensus 1277 ~~~-vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~-~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1277 RQT-VLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNG-FLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred ceE-EEEcCCCCcchhhhcccccCCCCCcccceeeecccCCc-eeeecCCccceeeccCCCcc
Confidence 322 2222222122211111 1111222233333344 78899999999999998654
No 181
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.80 E-value=2.5e-16 Score=147.16 Aligned_cols=254 Identities=24% Similarity=0.430 Sum_probs=194.6
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCC-CCeeEEEe-cCCCCCeEEEecC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHD-KEGYGLSW-SPFKEGYLVSGSH 187 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~-~~~~~~~l~s~~~ 187 (406)
....|...+.++.+.+.+ ..++.++.++.+.+|+..... .....+..+. ..+..+.+ ++++...++..+.
T Consensus 60 ~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (466)
T COG2319 60 LLRGHEDSITSIAFSPDG-ELLLSGSSDGTIKLWDLDNGE-------KLIKSLEGLHDSSVSKLALSSPDGNSILLASSS 131 (466)
T ss_pred eeeeccceEEEEEECCCC-cEEEEecCCCcEEEEEcCCCc-------eeEEEEeccCCCceeeEEEECCCcceEEeccCC
Confidence 456799999999999998 567778889999999998842 1244455533 36777777 6666524444344
Q ss_pred -CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec-CCcEEEEECCCCcccccccccCCCeeEEE
Q 015484 188 -DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD-DCQLMIWDLRTNQTQQRVKAHEKEVNYLS 265 (406)
Q Consensus 188 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~v~~i~ 265 (406)
|+.+.+|++... ......+..|...|..++|+| ++..+++++. |+.+++|++..+..+..+..|...|.+++
T Consensus 132 ~d~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 205 (466)
T COG2319 132 LDGTVKLWDLSTP-----GKLIRTLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLA 205 (466)
T ss_pred CCccEEEEEecCC-----CeEEEEEecCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEE
Confidence 999999999861 122355677899999999999 4557777775 99999999999888888888999999999
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCCCCcE-EecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc
Q 015484 266 FNPYNEWVLATASSDTTVALFDMRKMTVPLH-ILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 266 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 344 (406)
|+|++..++++++.|+.|++||.+.... +. .+..|...+ -..|+|++. ++++++.|+.+++|++.....
T Consensus 206 ~~~~~~~~~~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~------- 275 (466)
T COG2319 206 FSPDGGLLIASGSSDGTIRLWDLSTGKL-LRSTLSGHSDSV-VSSFSPDGS-LLASGSSDGTIRLWDLRSSSS------- 275 (466)
T ss_pred EcCCcceEEEEecCCCcEEEEECCCCcE-EeeecCCCCcce-eEeECCCCC-EEEEecCCCcEEEeeecCCCc-------
Confidence 9998874455558999999999885443 44 577787775 448999994 688999999999999986322
Q ss_pred cCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 345 EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 345 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.+....+|...|.++.|+|++. .+++++.|+.+++|+......
T Consensus 276 ------~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~ 318 (466)
T COG2319 276 ------LLRTLSGHSSSVLSVAFSPDGK-LLASGSSDGTVRLWDLETGKL 318 (466)
T ss_pred ------EEEEEecCCccEEEEEECCCCC-EEEEeeCCCcEEEEEcCCCce
Confidence 1222267888999999999877 456688889999998877653
No 182
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=8.8e-17 Score=149.98 Aligned_cols=263 Identities=14% Similarity=0.202 Sum_probs=185.0
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
.|.-.+++.+++|.+ +++|+|..||.|.+|.--.... .......+.-|..+|.+++|+++|. +|++|+..|.+.
T Consensus 203 ~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~~----~~~t~t~lHWH~~~V~~L~fS~~G~-~LlSGG~E~VLv 276 (792)
T KOG1963|consen 203 HHTFNITCVALSPNE-RYLAAGDSDGRILVWRDFGSSD----DSETCTLLHWHHDEVNSLSFSSDGA-YLLSGGREGVLV 276 (792)
T ss_pred hhcccceeEEecccc-ceEEEeccCCcEEEEecccccc----ccccceEEEecccccceeEEecCCc-eEeecccceEEE
Confidence 466678999999999 7999999999999997554111 1233566778999999999999999 999999999999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccc-----------cCCCe
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA-----------HEKEV 261 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------~~~~v 261 (406)
+|.+.+++. +.+..-.++|..+.++| ++.+.+....|..|.+....+.....++.+ ..+-.
T Consensus 277 ~Wq~~T~~k-------qfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~ 348 (792)
T KOG1963|consen 277 LWQLETGKK-------QFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLT 348 (792)
T ss_pred EEeecCCCc-------ccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccc
Confidence 999998762 22344578999999998 677788888899999988755444333311 23345
Q ss_pred eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCC-----------------------------------------------
Q 015484 262 NYLSFNPYNEWVLATASSDTTVALFDMRKMTVP----------------------------------------------- 294 (406)
Q Consensus 262 ~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~----------------------------------------------- 294 (406)
+.++++|.-+ .++-.+..|.|.+||+-+....
T Consensus 349 t~~~idpr~~-~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~ 427 (792)
T KOG1963|consen 349 TGVSIDPRTN-SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFD 427 (792)
T ss_pred eeEEEcCCCC-ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccC
Confidence 6677777443 5666666777777776542210
Q ss_pred --------------------cEEecCCCCCeEEEEEcCCCCC-EEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEE
Q 015484 295 --------------------LHILSSHTEEVFQVEWDPNHET-VLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLF 353 (406)
Q Consensus 295 --------------------~~~~~~h~~~v~~i~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 353 (406)
-.....|...+...++.+..+. .+++++.||.++||-+......... .....+..
T Consensus 428 ~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~----~s~W~c~~ 503 (792)
T KOG1963|consen 428 GEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKK----SSNWTCKA 503 (792)
T ss_pred ceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcC----ccceEEee
Confidence 1112345555555555443333 6889999999999998653322211 11234444
Q ss_pred EecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC-cccCC
Q 015484 354 SHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD-SIYRD 396 (406)
Q Consensus 354 ~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~-~~~~~ 396 (406)
...-|..+++.++|+.+|. +++++.|+.|.+||..+ ..++.
T Consensus 504 i~sy~k~~i~a~~fs~dGs--lla~s~~~~Itiwd~~~~~~l~~ 545 (792)
T KOG1963|consen 504 IGSYHKTPITALCFSQDGS--LLAVSFDDTITIWDYDTKNELLC 545 (792)
T ss_pred eeccccCcccchhhcCCCc--EEEEecCCEEEEecCCChhhhhc
Confidence 4445889999999999997 44567799999999998 44433
No 183
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=9.7e-18 Score=158.79 Aligned_cols=262 Identities=16% Similarity=0.223 Sum_probs=179.3
Q ss_pred CCceeEEEEcC-CCCcEEEEEeCCCeEEEEeCCCcc-cccc--CCCCCce-eeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 115 DGEVNRARCMP-QKPNLVGTKTSSCEVYVFDCAKQA-EKQQ--DDCDPDL-RLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 115 ~~~v~~i~~~p-~~~~~l~~~~~dg~i~iw~~~~~~-~~~~--~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
...|+.+.+-. ++..++++|+.||.|+||+--... ..++ ..+..+. .+.+..+.-.-++|..... +|++++.-.
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r 1187 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVR 1187 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCee
Confidence 35677777765 344689999999999999865432 1110 0111111 1111222234578988766 777777788
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc---cccccccCCC--eeEE
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT---QQRVKAHEKE--VNYL 264 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~--v~~i 264 (406)
.|+|||.........+ ..+....|+++.-+-..++++++|..||.|++||.|.... +...+.|+.. |..+
T Consensus 1188 ~IRIWDa~~E~~~~di-----P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~ 1262 (1387)
T KOG1517|consen 1188 SIRIWDAHKEQVVADI-----PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHL 1262 (1387)
T ss_pred EEEEEecccceeEeec-----ccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeE
Confidence 9999999875432222 1224556777776655789999999999999999987543 4445667766 9999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCC-CCCcEEecCCC--C-CeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccc
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMRKM-TVPLHILSSHT--E-EVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL 340 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~h~--~-~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 340 (406)
.+.+.|-..|++|+.+|.|++||+|.. ......+..|. + .++++..+++.+ ++|+|+. +.|+||++......
T Consensus 1263 slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l~-- 1338 (1387)
T KOG1517|consen 1263 SLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQLN-- 1338 (1387)
T ss_pred EeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhhc--
Confidence 999877656999999999999999983 22223333333 3 599999999997 6888887 99999998752211
Q ss_pred cccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 341 ELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 341 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
..... +..+ ......+.+++|+|... ++|+|+.|..|.||....+.
T Consensus 1339 ~~k~n---~~F~---~q~~gs~scL~FHP~~~-llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1339 IIKYN---PGFM---GQRIGSVSCLAFHPHRL-LLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ccccC---cccc---cCcCCCcceeeecchhH-hhhhccCCceEEEeecCCcC
Confidence 11000 1111 11234579999999887 79999999999999887654
No 184
>PF12265 CAF1C_H4-bd: Histone-binding protein RBBP4 or subunit C of CAF1 complex; InterPro: IPR022052 The CAF-1 complex is a conserved heterotrimeric protein complex that promotes histone H3 and H4 deposition onto newly synthesized DNA during replication or DNA repair; specifically it facilitates replication-dependent nucleosome assembly with the major histone H3 (H3.1). This domain is an alpha helix which sits just upstream of the WD40 seven-bladed beta-propeller in the human RbAp46 protein. RbAp46 folds into the beta-propeller and binds histone H4 in a groove formed between this N-terminal helix and an extended loop inserted into blade six []. ; PDB: 2YBA_A 3C99_A 2YB8_B 2XYI_A 3C9C_A 3CFV_B 3CFS_B 2XU7_A 3GFC_A.
Probab=99.79 E-value=2.8e-20 Score=125.58 Aligned_cols=71 Identities=41% Similarity=0.788 Sum_probs=54.1
Q ss_pred hHHhhhhhhcChhHhhhhhcCCCCCCceEEEEecCCC-CCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCC
Q 015484 14 EEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPP-QPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLP 86 (406)
Q Consensus 14 ~~~~~~wk~~~~~ly~~~~~~~~~~p~~~~~~~p~~~-~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~ 86 (406)
+|+|++||+|+|++||+++++.++||||+|||+|+.. .. . +..+..+++++||++.++.+|+|+|+++++|
T Consensus 1 ~e~~~lWk~n~p~lYd~~~~~~l~WPsLS~dwlpd~~~~~-~-~~~~~~~~ll~GT~t~~~~~n~l~v~~~~~p 72 (74)
T PF12265_consen 1 NEEYELWKKNDPSLYDLLHTHSLEWPSLSFDWLPDSLEGD-N-RNYPHSQYLLLGTQTSGQEQNYLYVMKVSLP 72 (74)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEE-SS--S-EEEEEEEEE---T-T-SEEEEEEEEE---SS-S-EEEEEEEEEEE
T ss_pred CcceeehhhCCHHHHHHHhhccCCCCCeEEEECcCccccc-C-CCCccEEEEEEEECcCCCCCCEEEEEEEeCC
Confidence 6899999999999999999999999999999999988 44 3 2346789999999999889999999999977
No 185
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=6.4e-16 Score=123.68 Aligned_cols=247 Identities=15% Similarity=0.188 Sum_probs=170.1
Q ss_pred CCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee--CC-----CCCeeEEEecC
Q 015484 104 PKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK--GH-----DKEGYGLSWSP 176 (406)
Q Consensus 104 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~--~h-----~~~v~~l~~~~ 176 (406)
++..++..-.|.++|+.++|.. .+|++|+ ||.|+=|......+.. ..++...++ -| --.|+++...|
T Consensus 51 gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~W~E~~es~--~~K~lwe~~~P~~~~~~evPeINam~ldP 124 (325)
T KOG0649|consen 51 GKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWEWNEEEESL--ATKRLWEVKIPMQVDAVEVPEINAMWLDP 124 (325)
T ss_pred CCcceeeccccCCCeeeeeeeh---hheeecc-CceEEEeeehhhhhhc--cchhhhhhcCccccCcccCCccceeEecc
Confidence 5566676788999999999993 4566665 5999999887654421 111111111 12 24688999998
Q ss_pred CCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccc
Q 015484 177 FKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA 256 (406)
Q Consensus 177 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 256 (406)
..+ -++.++.|+.+.-||+++++.. ..+++|...|.+++--. ....+++|+.||++|+||+++++.+..+..
T Consensus 125 ~en-Si~~AgGD~~~y~~dlE~G~i~------r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~ 196 (325)
T KOG0649|consen 125 SEN-SILFAGGDGVIYQVDLEDGRIQ------REYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEP 196 (325)
T ss_pred CCC-cEEEecCCeEEEEEEecCCEEE------EEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEecc
Confidence 777 5555558999999999998543 67789999999998744 345566999999999999999998777632
Q ss_pred c----------CCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCc
Q 015484 257 H----------EKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRR 326 (406)
Q Consensus 257 ~----------~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~ 326 (406)
. ...|.+++-+ .. .+++|+ ...+.+|.+|..+. ...+. -..++..+.|..+ .++++++.+.
T Consensus 197 yk~~~~lRp~~g~wigala~~--ed-WlvCGg-Gp~lslwhLrsse~-t~vfp-ipa~v~~v~F~~d---~vl~~G~g~~ 267 (325)
T KOG0649|consen 197 YKNPNLLRPDWGKWIGALAVN--ED-WLVCGG-GPKLSLWHLRSSES-TCVFP-IPARVHLVDFVDD---CVLIGGEGNH 267 (325)
T ss_pred ccChhhcCcccCceeEEEecc--Cc-eEEecC-CCceeEEeccCCCc-eEEEe-cccceeEeeeecc---eEEEeccccc
Confidence 1 2335555554 34 566555 45899999998664 55544 3677888888754 4778888889
Q ss_pred EEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 327 LMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 327 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
|.-|.+.. .+...........++..|+..--.++..++..+.+.|+.
T Consensus 268 v~~~~l~G---------------vl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 268 VQSYTLNG---------------VLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred eeeeeecc---------------EEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 99998875 333333333334566666543323666677777777763
No 186
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.78 E-value=1e-15 Score=143.09 Aligned_cols=247 Identities=28% Similarity=0.475 Sum_probs=187.5
Q ss_pred CceeEEEE-cCCCCcEEEEEeC-CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC-CCeEE
Q 015484 116 GEVNRARC-MPQKPNLVGTKTS-SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH-DNKIC 192 (406)
Q Consensus 116 ~~v~~i~~-~p~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-dg~i~ 192 (406)
..+..+.+ .+++..+++..+. ++.+.+|+... .......+..|...|.+++|+|++. .+++++. |+.++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~ 181 (466)
T COG2319 110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLST-------PGKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIK 181 (466)
T ss_pred CceeeEEEECCCcceEEeccCCCCccEEEEEecC-------CCeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceE
Confidence 37888888 7777534555444 99999999986 1233667889999999999999998 8888885 99999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccc-cccccCCCeeEEEecCCCC
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ-RVKAHEKEVNYLSFNPYNE 271 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~i~~~~~~~ 271 (406)
+|++.... ....+..|...|.+++|+|.+..++++++.|+.|++||...+.... .+..|.... ...|+|++.
T Consensus 182 ~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 254 (466)
T COG2319 182 LWDLRTGK------PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGS 254 (466)
T ss_pred EEEcCCCc------eEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCC
Confidence 99998732 2345556899999999998444366566999999999988777666 577777665 348999986
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCee
Q 015484 272 WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPEL 351 (406)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 351 (406)
++++++.|+.+++|+++.....+..+..|...|.++.|+|++.. +++++.|+.+.+||..... .
T Consensus 255 -~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~--------------~ 318 (466)
T COG2319 255 -LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKL-LASGSSDGTVRLWDLETGK--------------L 318 (466)
T ss_pred -EEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCE-EEEeeCCCcEEEEEcCCCc--------------e
Confidence 88899999999999999766534444678899999999997764 6668888999999887622 1
Q ss_pred EEE--ecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 352 LFS--HGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 352 ~~~--~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
... ...|...+..+.|.+++..++.++..|+.+.+|++....
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 319 LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 122 236777899999943324344444688999999998876
No 187
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=7.1e-17 Score=140.11 Aligned_cols=205 Identities=12% Similarity=0.207 Sum_probs=159.0
Q ss_pred CCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEEC
Q 015484 166 DKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDL 245 (406)
Q Consensus 166 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~ 245 (406)
.+.|++|.|+|..+ .|++|+.||++++|.++..... .++.+.-...+|.+.+|+|++...+++++....++.||+
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~----~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNP----KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccCh----hheeeeeccCccceeeecCCCceEEEecccceEEEEeec
Confidence 46899999999888 9999999999999999764332 234444457899999999966658889999999999999
Q ss_pred CCCcccc--ccccc-CCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEe
Q 015484 246 RTNQTQQ--RVKAH-EKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSA 322 (406)
Q Consensus 246 ~~~~~~~--~~~~~-~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~ 322 (406)
.+.+..+ ...++ ...+..+..+|+++ +|+..+..|.|.+....++.. +..++. .+.|..++|+.+++ .|++++
T Consensus 288 e~ak~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~el-i~s~Ki-eG~v~~~~fsSdsk-~l~~~~ 363 (514)
T KOG2055|consen 288 ETAKVTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKEL-ITSFKI-EGVVSDFTFSSDSK-ELLASG 363 (514)
T ss_pred cccccccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhh-hheeee-ccEEeeEEEecCCc-EEEEEc
Confidence 8876532 22333 34677888999999 999999999999998887654 555553 68899999999997 577777
Q ss_pred CCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCC--CeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 323 DDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKA--KISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 323 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
.+|.|.+||++.. .++..+.. .+ .-++++.++++. +||+|+..|.|.|||..+-...
T Consensus 364 ~~GeV~v~nl~~~--------------~~~~rf~D-~G~v~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~~~s 422 (514)
T KOG2055|consen 364 GTGEVYVWNLRQN--------------SCLHRFVD-DGSVHGTSLCISLNGS-YLATGSDSGIVNIYDGNSCFAS 422 (514)
T ss_pred CCceEEEEecCCc--------------ceEEEEee-cCccceeeeeecCCCc-eEEeccCcceEEEeccchhhcc
Confidence 7999999999983 33333221 12 235677789999 5999999999999997766543
No 188
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=6.9e-18 Score=149.32 Aligned_cols=217 Identities=19% Similarity=0.306 Sum_probs=163.5
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCcee-eeCCCCCeeEEEecCC-CCCeEEEecCC
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLR-LKGHDKEGYGLSWSPF-KEGYLVSGSHD 188 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~-~~~~l~s~~~d 188 (406)
..+|+|.|+|+.|+.+| .+|++|+.|-.+.|||.-.. ++.+. -.+|...|.++.|-|. +..++++|..|
T Consensus 46 L~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~~--------KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgD 116 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFEY--------KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGD 116 (758)
T ss_pred hccccceecceeecCCC-CEEeecCCcceEEeecchhc--------ceeeeeecccccceeEEeeeccCCCeEEEeccCc
Confidence 45899999999999999 79999999999999999863 33443 3589999999999995 33389999999
Q ss_pred CeEEEEeCCCccCC----ceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccc----------ccc
Q 015484 189 NKICLWDVSALAQD----KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ----------QRV 254 (406)
Q Consensus 189 g~i~iwd~~~~~~~----~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~----------~~~ 254 (406)
..|+++|+...+.. ........+..|...|..|+-.|.+++.|.+++.||+|+-+|+|..... ..+
T Consensus 117 k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny 196 (758)
T KOG1310|consen 117 KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNY 196 (758)
T ss_pred ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHh
Confidence 99999999863321 1223345567788899999999988899999999999999999974321 111
Q ss_pred cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCC-----------------cEEe-cCCC-----------CCe
Q 015484 255 KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVP-----------------LHIL-SSHT-----------EEV 305 (406)
Q Consensus 255 ~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-----------------~~~~-~~h~-----------~~v 305 (406)
....-...++..+|..+++|++|+.|-..++||.|....+ +..+ .+|. ..+
T Consensus 197 ~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~ 276 (758)
T KOG1310|consen 197 NPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCC 276 (758)
T ss_pred chhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeee
Confidence 2223456789999999999999999999999996532211 1111 1121 125
Q ss_pred EEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCc
Q 015484 306 FQVEWDPNHETVLASSADDRRLMVWDLNRIGD 337 (406)
Q Consensus 306 ~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 337 (406)
+-+.|+|+|..+|++-+.+ .|+++|+.....
T Consensus 277 t~vtfnpNGtElLvs~~gE-hVYlfdvn~~~~ 307 (758)
T KOG1310|consen 277 TYVTFNPNGTELLVSWGGE-HVYLFDVNEDKS 307 (758)
T ss_pred EEEEECCCCcEEEEeeCCe-EEEEEeecCCCC
Confidence 6678999998777776644 799999987443
No 189
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.78 E-value=1.1e-17 Score=147.69 Aligned_cols=210 Identities=15% Similarity=0.229 Sum_probs=162.7
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeee
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAM 208 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 208 (406)
..++.++.||.+.|.+-.. +.......|.+.+.+-.|+|+|. -|+++++||.|++|.-...-.
T Consensus 76 d~~~i~s~DGkf~il~k~~---------rVE~sv~AH~~A~~~gRW~~dGt-gLlt~GEDG~iKiWSrsGMLR------- 138 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSA---------RVERSISAHAAAISSGRWSPDGA-GLLTAGEDGVIKIWSRSGMLR------- 138 (737)
T ss_pred ceEEEEcCCceEEEecccc---------hhhhhhhhhhhhhhhcccCCCCc-eeeeecCCceEEEEeccchHH-------
Confidence 5688889999999887654 33456778999999999999999 888999999999998543211
Q ss_pred eeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeC
Q 015484 209 HVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDM 288 (406)
Q Consensus 209 ~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~ 288 (406)
.++.....+|.|++|.|+..+++.+.+ +.+.|=.+.....+-..++|.+-|.+++|++..+ ++++|+.|-..++||-
T Consensus 139 Stl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfKvWD~ 215 (737)
T KOG1524|consen 139 STVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFKIWDA 215 (737)
T ss_pred HHHhhcCceeEEEEECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCcccc-ceeecCCceeEEeecc
Confidence 223345678999999998777776554 5677666666666667789999999999999988 9999999999999997
Q ss_pred CCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeC
Q 015484 289 RKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWN 368 (406)
Q Consensus 289 ~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 368 (406)
.. .++..-..|..+|++++|+|+. +++.++.. +++ ++ ....+.|..++||
T Consensus 216 ~G--~~Lf~S~~~ey~ITSva~npd~--~~~v~S~n-t~R---~~----------------------~p~~GSifnlsWS 265 (737)
T KOG1524|consen 216 QG--ANLFTSAAEEYAITSVAFNPEK--DYLLWSYN-TAR---FS----------------------SPRVGSIFNLSWS 265 (737)
T ss_pred cC--cccccCChhccceeeeeecccc--ceeeeeee-eee---ec----------------------CCCccceEEEEEc
Confidence 63 4477778899999999999993 46666532 343 11 1235679999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeC
Q 015484 369 KNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 369 ~~~~~~l~s~~~dg~i~iw~~ 389 (406)
+||. .+++|...|.+.+=-+
T Consensus 266 ~DGT-Q~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 266 ADGT-QATCGTSTGQLIVAYA 285 (737)
T ss_pred CCCc-eeeccccCceEEEeee
Confidence 9999 5888887887655433
No 190
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=8.7e-18 Score=150.10 Aligned_cols=210 Identities=20% Similarity=0.371 Sum_probs=165.5
Q ss_pred ceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceee--------------------------------
Q 015484 159 DLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVID-------------------------------- 206 (406)
Q Consensus 159 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------------------------- 206 (406)
...+.+|++.|.+|...|.|. .|++|+.||+|+||.+.++.+.+.+.
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp 471 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP 471 (733)
T ss_pred eeeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence 456789999999999999888 99999999999999998864321110
Q ss_pred -----------------------------------------eeeeeeccCccEEEEEeeCCCCCEEEEEec---CCcEEE
Q 015484 207 -----------------------------------------AMHVYEAHESVVEDVSWHLKNENLFGSAGD---DCQLMI 242 (406)
Q Consensus 207 -----------------------------------------~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~---dg~i~i 242 (406)
.+.....|...|..+.||. .+.+|++..- ...|.|
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccCCCcceEEE
Confidence 0112234566788888886 6778877654 346888
Q ss_pred EECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEe
Q 015484 243 WDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSA 322 (406)
Q Consensus 243 ~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~ 322 (406)
+++........|....+.|.++.|+|... +|++++. ..|++||+.... .+..+......|..++.+|.|.+ |+.|+
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p-~lfVaTq-~~vRiYdL~kqe-lvKkL~tg~kwiS~msihp~GDn-li~gs 626 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKP-YLFVATQ-RSVRIYDLSKQE-LVKKLLTGSKWISSMSIHPNGDN-LILGS 626 (733)
T ss_pred EecccccccCchhhcCCceeEEEecCCCc-eEEEEec-cceEEEehhHHH-HHHHHhcCCeeeeeeeecCCCCe-EEEec
Confidence 88877776666766778899999999998 6666664 579999998743 35666666778999999999987 78899
Q ss_pred CCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 323 DDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 323 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
.|+.+..+|+.... .....+.-|...|++|+|++.-+ ++++|+.||.+.|+-
T Consensus 627 ~d~k~~WfDldlss-------------kPyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 627 YDKKMCWFDLDLSS-------------KPYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFH 678 (733)
T ss_pred CCCeeEEEEcccCc-------------chhHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEe
Confidence 99999999998633 34445567899999999999999 899999999999884
No 191
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=1e-16 Score=151.94 Aligned_cols=256 Identities=16% Similarity=0.262 Sum_probs=177.9
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC---CCCCeeEEEecC-CCCCeEEEecCCCeEE
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG---HDKEGYGLSWSP-FKEGYLVSGSHDNKIC 192 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~~~-~~~~~l~s~~~dg~i~ 192 (406)
+...+.|+|-.+ .++++...-.|+|||.+.... ...+.. ....|+.+.+-. ++..++++|+.||.|+
T Consensus 1066 ~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~--------l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIR 1136 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRL--------LNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIR 1136 (1387)
T ss_pred CCceeeecCCCc-eeEEcCCcceEEEEecccCce--------eccccCCCCCCCccceeeeecccchhheeeeccCceEE
Confidence 466788999885 577777667899999988432 222222 235688888754 3344899999999999
Q ss_pred EEeCCCcc--CCceeeeeeeeecc----CccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-cccCCCeeEEE
Q 015484 193 LWDVSALA--QDKVIDAMHVYEAH----ESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKEVNYLS 265 (406)
Q Consensus 193 iwd~~~~~--~~~~~~~~~~~~~~----~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~i~ 265 (406)
||+--... ..+.+.....+.++ .+.=.-+.|.-+.+.++ ++|.-..|+|||......+..+ .+....|+++.
T Consensus 1137 Iwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll-~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS 1215 (1387)
T KOG1517|consen 1137 IWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLL-VTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALS 1215 (1387)
T ss_pred EecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEE-ecCCeeEEEEEecccceeEeecccCCCccceeec
Confidence 99754332 21222111111111 11112346775455555 5555789999999887777666 33456778877
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCCC--CcEEecCCCCC--eEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccc
Q 015484 266 FNPYNEWVLATASSDTTVALFDMRKMTV--PLHILSSHTEE--VFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE 341 (406)
Q Consensus 266 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~h~~~--v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 341 (406)
-+-.+.+++++|..||.|++||.|.... ++.....|... |..+.+.+.|-.-|++|+.||.|++||++....
T Consensus 1216 ~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~---- 1291 (1387)
T KOG1517|consen 1216 ADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK---- 1291 (1387)
T ss_pred ccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc----
Confidence 6655544999999999999999997654 67778888887 999999997754599999999999999997311
Q ss_pred ccccCCCCeeEEEecCC---CCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCC
Q 015484 342 LDAEDGPPELLFSHGGH---KAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRD 396 (406)
Q Consensus 342 ~~~~~~~~~~~~~~~~h---~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 396 (406)
+.......| .+.++++..+++.+ ++|+|+. +.|+||++....+..
T Consensus 1292 --------e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l~~ 1339 (1387)
T KOG1517|consen 1292 --------ETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQLNI 1339 (1387)
T ss_pred --------cccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhhcc
Confidence 111112222 22589999999999 8999987 999999999876543
No 192
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.77 E-value=2.3e-16 Score=131.04 Aligned_cols=244 Identities=17% Similarity=0.221 Sum_probs=176.9
Q ss_pred CCCCCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeec
Q 015484 35 PLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRV 114 (406)
Q Consensus 35 ~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 114 (406)
.+.-|.++-.|.++. ..+.++.++ +++.|.+..-. . .--.....-.|
T Consensus 8 ~~~~pitchAwn~dr------------t~iAv~~~~-----~evhiy~~~~~----~------------~w~~~htls~H 54 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDR------------TQIAVSPNN-----HEVHIYSMLGA----D------------LWEPAHTLSEH 54 (361)
T ss_pred eccCceeeeeecCCC------------ceEEeccCC-----ceEEEEEecCC----C------------Cceeceehhhh
Confidence 345588888896642 244454442 67777765521 1 01122334469
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEE
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLW 194 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 194 (406)
...|+.|.|.|.. +.|++|+.|..-+||....+ +.++|...+..++..++++.|+|.+. .|++|+.-..|.||
T Consensus 55 d~~vtgvdWap~s-nrIvtcs~drnayVw~~~~~-----~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVc 127 (361)
T KOG1523|consen 55 DKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPSG-----GTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVC 127 (361)
T ss_pred CcceeEEeecCCC-CceeEccCCCCccccccCCC-----CeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEE
Confidence 9999999999988 46999999999999999543 46888999999999999999999887 99999999999999
Q ss_pred eCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECC-----C-------------Ccccccccc
Q 015484 195 DVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR-----T-------------NQTQQRVKA 256 (406)
Q Consensus 195 d~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~-----~-------------~~~~~~~~~ 256 (406)
-++..+.-.. ..+.-+.+.+.|+++.|+| ++-++++|+.|+..+++..- . |..+..+..
T Consensus 128 y~E~ENdWWV--sKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~ 204 (361)
T KOG1523|consen 128 YYEQENDWWV--SKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASS 204 (361)
T ss_pred EEecccceeh--hhhhCCccccceeeeeccC-CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhcc
Confidence 8876543111 1122334678899999999 78999999999999998642 1 111222334
Q ss_pred cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCC
Q 015484 257 HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADD 324 (406)
Q Consensus 257 ~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d 324 (406)
..+.+..+.|+|.|. .|+-.+.|+.+.+-|.....+.+.......-+..++.|-.+.. ++.++.|
T Consensus 205 ~ggwvh~v~fs~sG~-~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~--vv~ag~~ 269 (361)
T KOG1523|consen 205 SGGWVHGVLFSPSGN-RLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENS--VVAAGYD 269 (361)
T ss_pred CCCceeeeEeCCCCC-EeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCc--eeecCCC
Confidence 567899999999999 8888899999999998876543444444446778888866543 4455555
No 193
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.3e-17 Score=140.34 Aligned_cols=175 Identities=18% Similarity=0.292 Sum_probs=142.9
Q ss_pred ceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeee-ccCccEEEEEeeCCCCCEEEEEecC
Q 015484 159 DLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYE-AHESVVEDVSWHLKNENLFGSAGDD 237 (406)
Q Consensus 159 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~p~~~~~l~~~~~d 237 (406)
.+.+.+|.+.|.++.|+.+++ +|++|+.|-.+++|++...-..+..+++.... .|.+.|.|++|.. ++..+.+|+.+
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~ 126 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERW 126 (609)
T ss_pred hhhhhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCc
Confidence 445778999999999999988 99999999999999987643333334444433 3558999999997 78888999999
Q ss_pred CcEEEEECCCCccccccc--ccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEe--cCCCCCeEEEEEcCC
Q 015484 238 CQLMIWDLRTNQTQQRVK--AHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHIL--SSHTEEVFQVEWDPN 313 (406)
Q Consensus 238 g~i~i~d~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~h~~~v~~i~~~p~ 313 (406)
++|.+.|+.+.+.+..+. ...+.|+.+..+|..+ .|++.+.++.|.+||.|....++..+ .........+.|+|.
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence 999999999988876663 3456899999999966 99999999999999999866444333 233456788999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCC
Q 015484 314 HETVLASSADDRRLMVWDLNRIG 336 (406)
Q Consensus 314 ~~~~l~s~~~dg~i~iwd~~~~~ 336 (406)
.+.+|++.+..+-+.+||++...
T Consensus 206 ~P~Li~~~~~~~G~~~~D~R~~~ 228 (609)
T KOG4227|consen 206 TPALILVNSETGGPNVFDRRMQA 228 (609)
T ss_pred CceeEEeccccCCCCceeecccc
Confidence 99999999999999999998754
No 194
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.77 E-value=1.2e-18 Score=161.12 Aligned_cols=243 Identities=18% Similarity=0.279 Sum_probs=189.9
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
.+..+|...|.|+.|...| .++++|+.|..|+||...+. .....+.||.+.|+.++.+..+. ++++++.|
T Consensus 184 krLlgH~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et~--------~~lAs~rGhs~ditdlavs~~n~-~iaaaS~D 253 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMETA--------RCLASCRGHSGDITDLAVSSNNT-MIAAASND 253 (1113)
T ss_pred HHHHhhhhheeeeeecccc-ceEeecCccceeeeeeccch--------hhhccCCCCccccchhccchhhh-hhhhcccC
Confidence 4456899999999999999 68999999999999998773 44778999999999999998777 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccc---cc-cccCCCeeEE
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ---RV-KAHEKEVNYL 264 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~-~~~~~~v~~i 264 (406)
..|++|.+..+. ++..+.+|.+.|++|+|+|. ++.+.||++++||.+-.-... .. ......+.++
T Consensus 254 ~vIrvWrl~~~~------pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~ 322 (1113)
T KOG0644|consen 254 KVIRVWRLPDGA------PVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSI 322 (1113)
T ss_pred ceEEEEecCCCc------hHHHHhccccceeeeccCcc-----ccCCCCCceEeccccccccccCCCCCCcccccceeee
Confidence 999999998874 34667899999999999993 378899999999988211111 11 1123556777
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 344 (406)
.|...+. -+++|+.|+.-..|.+.... .+...+.-+.++.+-..+.+++-.+-.+++|++..
T Consensus 323 ~~~~~~~-~f~Tgs~d~ea~n~e~~~l~-------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~---------- 384 (1113)
T KOG0644|consen 323 LFENNGD-RFLTGSRDGEARNHEFEQLA-------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYT---------- 384 (1113)
T ss_pred ecccccc-ccccccCCcccccchhhHhh-------hhccceEEEeccccccccceeeeeeeEeeeeeccc----------
Confidence 8877777 79999999988888765321 12222222333333334577777888999999987
Q ss_pred cCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 345 EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 345 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
..+.....+|...+..+.++|-.+.+..+++.||...|||+..++-
T Consensus 385 ----g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p 430 (1113)
T KOG0644|consen 385 ----GQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP 430 (1113)
T ss_pred ----chhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCc
Confidence 4566677889999999999998887888999999999999988753
No 195
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.77 E-value=8.9e-16 Score=129.95 Aligned_cols=240 Identities=13% Similarity=0.194 Sum_probs=168.4
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC--eEEE
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN--KICL 193 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~i 193 (406)
..++.+.|..+. .+|..|+.|| -++|+...... ..........|..+-|+. . ++|..+.+. .+++
T Consensus 6 ~ti~~~~~Nqd~-~~lsvGs~~G-yk~~~~~~~~k--------~~~~~~~~~~IvEmLFSS--S-LvaiV~~~qpr~Lkv 72 (391)
T KOG2110|consen 6 PTINFIGFNQDS-TLLSVGSKDG-YKIFSCSPFEK--------CFSKDTEGVSIVEMLFSS--S-LVAIVSIKQPRKLKV 72 (391)
T ss_pred cceeeeeeccce-eEEEccCCCc-eeEEecCchHH--------hhcccCCCeEEEEeeccc--c-eeEEEecCCCceEEE
Confidence 345666688777 6899999998 78888876321 111112223455556664 2 555555443 4888
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccc---ccCCCeeEEEecCCC
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK---AHEKEVNYLSFNPYN 270 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~i~~~~~~ 270 (406)
.++.+.... |-. ....+|.++.++. +.|+++-. ..|+|||+++.+.+.++. .+...+.++++++.+
T Consensus 73 ~~~Kk~~~I----Ce~---~fpt~IL~VrmNr---~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n 141 (391)
T KOG2110|consen 73 VHFKKKTTI----CEI---FFPTSILAVRMNR---KRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNAN 141 (391)
T ss_pred EEcccCceE----EEE---ecCCceEEEEEcc---ceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCC
Confidence 888764321 111 2456899999873 44444444 349999999999988884 344556667777666
Q ss_pred CcEEEEEe--CCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCc-EEEEeCCCCCcccccccccCC
Q 015484 271 EWVLATAS--SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRR-LMVWDLNRIGDEQLELDAEDG 347 (406)
Q Consensus 271 ~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~ 347 (406)
. ++|--+ ..|.|.+||..+... +..+..|.+.+.+++|+++|. +|||+++.|+ |||+.+..
T Consensus 142 ~-ylAyp~s~t~GdV~l~d~~nl~~-v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~------------- 205 (391)
T KOG2110|consen 142 C-YLAYPGSTTSGDVVLFDTINLQP-VNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPE------------- 205 (391)
T ss_pred c-eEEecCCCCCceEEEEEccccee-eeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCC-------------
Confidence 6 555433 357999999998654 888999999999999999996 8999999987 78999976
Q ss_pred CCeeEEEecCC--CCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCCC
Q 015484 348 PPELLFSHGGH--KAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDD 397 (406)
Q Consensus 348 ~~~~~~~~~~h--~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 397 (406)
.+.++.++.. ...|.+++|+|+++ +|++.+..++|+|++++....++.
T Consensus 206 -G~kl~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~~~~~~~~ 255 (391)
T KOG2110|consen 206 -GQKLYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLEKVSNNPP 255 (391)
T ss_pred -ccEeeeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEecccccCCC
Confidence 2344444322 33588999999999 688888899999999998875443
No 196
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.76 E-value=8.7e-17 Score=142.12 Aligned_cols=253 Identities=20% Similarity=0.313 Sum_probs=175.7
Q ss_pred eeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEec-----CCCCCeEEEecCCCeEE
Q 015484 118 VNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWS-----PFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 118 v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-----~~~~~~l~s~~~dg~i~ 192 (406)
+....++-.+..++.-.+ ..+++|+...... ...++....-......|-+|+ +.+- -|+.|-.-|.|.
T Consensus 126 ~~~~~~~~~gd~lcFnvg--~~lyv~~~~g~~~----~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~-dllIGf~tGqvq 198 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVG--RELYVYSYRGAAD----LSKPIDKREYKGTSPTCHDFNSFTATPKGL-DLLIGFTTGQVQ 198 (636)
T ss_pred eeeccccCCCCEEEEecC--CeEEEEEccCcch----hccchhhhcccCCCCceecccccccCCCCc-ceEEeeccCceE
Confidence 344444445544443333 3588888875221 122222111111222344442 2233 577888889999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC------------------------
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN------------------------ 248 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~------------------------ 248 (406)
+.|.......+.+..-. .-.+..|+++.|-|.+..+|+++-.+|.+++||....
T Consensus 199 ~idp~~~~~sklfne~r--~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ks 276 (636)
T KOG2394|consen 199 LIDPINFEVSKLFNEER--LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKS 276 (636)
T ss_pred EecchhhHHHHhhhhcc--cccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeec
Confidence 98876632211111101 1134789999999988899999999999999976411
Q ss_pred ----cccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCC
Q 015484 249 ----QTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADD 324 (406)
Q Consensus 249 ----~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d 324 (406)
.++..+.-....|+.++|+|+|+ +||+.+.||.++|||..+.+. +..++.--+...|++|+|||+ +|++|++|
T Consensus 277 k~~rNPv~~w~~~~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt~eL-lg~mkSYFGGLLCvcWSPDGK-yIvtGGED 353 (636)
T KOG2394|consen 277 KKTRNPVARWHIGEGSINEFAFSPDGK-YLATVSQDGFLRIFDFDTQEL-LGVMKSYFGGLLCVCWSPDGK-YIVTGGED 353 (636)
T ss_pred cccCCccceeEeccccccceeEcCCCc-eEEEEecCceEEEeeccHHHH-HHHHHhhccceEEEEEcCCcc-EEEecCCc
Confidence 01111122345788999999999 999999999999999998654 555666667899999999998 59999999
Q ss_pred CcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCC----------------------------------
Q 015484 325 RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKN---------------------------------- 370 (406)
Q Consensus 325 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~---------------------------------- 370 (406)
-.|.||.+.. .+++..-+||.++|..|+|.|-
T Consensus 354 DLVtVwSf~e--------------rRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~ 419 (636)
T KOG2394|consen 354 DLVTVWSFEE--------------RRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSA 419 (636)
T ss_pred ceEEEEEecc--------------ceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCc
Confidence 9999999986 5788888999999999999830
Q ss_pred -------------CCcEEEEEeCCCcEEEEeCCCcccCC
Q 015484 371 -------------DPWVISSVADDNTVQVWQMTDSIYRD 396 (406)
Q Consensus 371 -------------~~~~l~s~~~dg~i~iw~~~~~~~~~ 396 (406)
-.|.|.+.+.|-.+.+||+....+..
T Consensus 420 ~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 420 EGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred CCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence 13678899999999999999887755
No 197
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.76 E-value=4.2e-17 Score=144.03 Aligned_cols=248 Identities=16% Similarity=0.249 Sum_probs=170.6
Q ss_pred EEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEe-CCCccccccCCCCCcee-eeCCCCCeeEEEecC-CCCCeEEE
Q 015484 108 IAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFD-CAKQAEKQQDDCDPDLR-LKGHDKEGYGLSWSP-FKEGYLVS 184 (406)
Q Consensus 108 ~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~-~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~-~~~~~l~s 184 (406)
..++..|...|.|+.|.... .++.+ +.|..+.+|. +........ ...+... ..-| +....--. .+...|+.
T Consensus 7 ~~~k~r~~e~vc~v~w~~~e-ei~~~-~dDh~~~~~~~~~~~s~~~~-~~p~df~pt~~h---~~~rs~~~g~~~d~~~i 80 (737)
T KOG1524|consen 7 ICKKNRNSEKVCCVDWSSNE-EIYFV-SDDHQIFKWSDVSRDSVEVA-KLPDDFVPTDMH---LGGRSSGGGKGSDTLLI 80 (737)
T ss_pred hhhccccceeEEeecccccc-eEEEe-ccCceEEEeecccchhhhhh-hCCcccCCcccc---ccccccCCCCCcceEEE
Confidence 34455778888899999877 34444 4555565554 443221110 0000000 0011 00100000 11226888
Q ss_pred ecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEE
Q 015484 185 GSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYL 264 (406)
Q Consensus 185 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i 264 (406)
++.||.+.+.+-... . ......|.+++.+-.|+| ++.-|++++.||.|++|. ++|....++.....+|+|+
T Consensus 81 ~s~DGkf~il~k~~r-V------E~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 81 CSNDGRFVILNKSAR-V------ERSISAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCA 151 (737)
T ss_pred EcCCceEEEecccch-h------hhhhhhhhhhhhhcccCC-CCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEE
Confidence 899999999875432 1 134467999999999999 566677999999999998 6677666666678899999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 344 (406)
+|.|+.+..+.+.+ +.+.+=-+..... +...++|.+-|.++.|++..+ ++++|++|-..+|||-..
T Consensus 152 ~W~p~S~~vl~c~g--~h~~IKpL~~n~k-~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfKvWD~~G---------- 217 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQG--GHISIKPLAANSK-IIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFKIWDAQG---------- 217 (737)
T ss_pred EECCCCCceEEecC--CeEEEeecccccc-eeEEeccCcEEEEeecCcccc-ceeecCCceeEEeecccC----------
Confidence 99999986666554 5677766665444 566789999999999999997 799999999999999865
Q ss_pred cCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 345 EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 345 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
..++....|..+|++++|+|+ . +++.++ -+++++=.++.|
T Consensus 218 -----~~Lf~S~~~ey~ITSva~npd-~-~~~v~S-~nt~R~~~p~~G 257 (737)
T KOG1524|consen 218 -----ANLFTSAAEEYAITSVAFNPE-K-DYLLWS-YNTARFSSPRVG 257 (737)
T ss_pred -----cccccCChhccceeeeeeccc-c-ceeeee-eeeeeecCCCcc
Confidence 777888899999999999999 4 455555 345665444444
No 198
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.74 E-value=3.9e-17 Score=139.56 Aligned_cols=165 Identities=22% Similarity=0.427 Sum_probs=140.5
Q ss_pred CCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCc---eeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEE
Q 015484 166 DKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDK---VIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMI 242 (406)
Q Consensus 166 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i 242 (406)
..++..+.|.+...+.|+||+.|..|++|.++...... .+.....+..|..+|+++.|+| ++.++++|+++|.+.+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP-DGELLASGGDGGEVFL 91 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC-CcCeeeecCCCceEEE
Confidence 46899999999877799999999999999998765443 4556677888999999999999 7999999999999999
Q ss_pred EECC--------C-----Cc---ccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeE
Q 015484 243 WDLR--------T-----NQ---TQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVF 306 (406)
Q Consensus 243 ~d~~--------~-----~~---~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~ 306 (406)
|-.. + .+ ....+.+|...+..++|+|++. ++++++.|..+++||+..+.. ...+..|...|.
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~G~l-~~~~~dh~~yvq 169 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHAGQL-LAILDDHEHYVQ 169 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc-eeeeeeccceEEEEEecccee-Eeeccccccccc
Confidence 9765 2 10 1233467889999999999999 999999999999999999776 888999999999
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 307 QVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 307 ~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
.++|.|.+++ +++-+.|...+++.+..
T Consensus 170 gvawDpl~qy-v~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 170 GVAWDPLNQY-VASKSSDRHPEGFSAKL 196 (434)
T ss_pred eeecchhhhh-hhhhccCcccceeeeee
Confidence 9999999975 88888898777777654
No 199
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.74 E-value=1.5e-16 Score=143.22 Aligned_cols=221 Identities=18% Similarity=0.283 Sum_probs=171.5
Q ss_pred CceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC
Q 015484 158 PDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD 237 (406)
Q Consensus 158 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d 237 (406)
.+..+.+|...|+.+.|+|....+|++|+.|..|+||.+..+...+.-.+-..+.+....+.++.|+|....+++++ ..
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~-a~ 149 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASG-AH 149 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEec-cC
Confidence 45668899999999999998877999999999999999986544332222233344456789999999888888665 46
Q ss_pred CcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCC-eEEEEEcCCCCC
Q 015484 238 CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEE-VFQVEWDPNHET 316 (406)
Q Consensus 238 g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~-v~~i~~~p~~~~ 316 (406)
|++++||+.+++....+.+|...|.+..|+.+|. +|++.+.|..|+|||.|....+++...+|.+. =..+.|..+-..
T Consensus 150 g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~-llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~r 228 (1012)
T KOG1445|consen 150 GSVYITDISTQKTAVELSGHTDKVQSADWSEDGK-LLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWER 228 (1012)
T ss_pred ceEEEEEcccCceeecccCCchhhhccccccCCc-eEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhh
Confidence 8999999999999999999999999999999999 99999999999999999988889999988763 456778766555
Q ss_pred EEEEEeC---CCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 317 VLASSAD---DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 317 ~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
++-+|-. -..|++||.+..+..... ..+. ....|.---+.|+.+.++.+|-.+..+..+.+.+.
T Consensus 229 lisTGF~~~R~reV~~~Dtr~f~~p~~t-----------leld-~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~ 295 (1012)
T KOG1445|consen 229 LISTGFTTKRIREVRAYDTRKFGAPVHT-----------LELD-SSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDR 295 (1012)
T ss_pred hhhcccchhhheeeeeeeccccCCccee-----------EEee-cccceEeeeecCCCceEEEecCCcceEEEEEecCC
Confidence 4544443 356899999986543322 1222 12235555688998877888888888888887665
No 200
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=3.9e-17 Score=142.64 Aligned_cols=260 Identities=18% Similarity=0.244 Sum_probs=191.6
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc------------------------------------
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ------------------------------------ 153 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~------------------------------------ 153 (406)
+.-+|.|.|+.+.|...| ..|++|+.|..|.+||.........
T Consensus 137 kL~~H~GcVntV~FN~~G-d~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRG-DVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred cccCCCCccceeeecccC-ceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 344699999999999999 7899999999999999876544320
Q ss_pred ----CCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCc---cEEEEEeeCC
Q 015484 154 ----DDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHES---VVEDVSWHLK 226 (406)
Q Consensus 154 ----~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~i~~i~~~p~ 226 (406)
+.......+..|.++|.-++.-|....-|.+++.|+.+.-+|++.......+.+. ..+.. ...+|+.+|.
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr---~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCR---EADEKERVGLYTIAVDPR 292 (559)
T ss_pred eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeee---ccCCccceeeeeEecCCC
Confidence 1122244556788999999999988878999999999999999886554433322 22223 5788999998
Q ss_pred CCCEEEEEecCCcEEEEECCCCcc------cccc------cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC--
Q 015484 227 NENLFGSAGDDCQLMIWDLRTNQT------QQRV------KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT-- 292 (406)
Q Consensus 227 ~~~~l~~~~~dg~i~i~d~~~~~~------~~~~------~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~-- 292 (406)
+.+.|++++.|-.+++||.+.-.. +..+ ......|++++++.++. -|++...|-.|+++.-..+.
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s-ElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGS-ELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcc-ceeeeecccceEEeccccccCC
Confidence 888999999999999999875322 1222 12345689999997766 45555667789999433211
Q ss_pred ---------CCcEE-ecCCCC--CeEEEEE-cCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCC
Q 015484 293 ---------VPLHI-LSSHTE--EVFQVEW-DPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHK 359 (406)
Q Consensus 293 ---------~~~~~-~~~h~~--~v~~i~~-~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 359 (406)
..+.. +++|.. .|..+-| -|..+ ++++|+.-|.|.||+-.. .+++..+.+-.
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE-yVvSGSDCGhIFiW~K~t--------------~eii~~MegDr 436 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE-YVVSGSDCGHIFIWDKKT--------------GEIIRFMEGDR 436 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeeccCccc-eEEecCccceEEEEecch--------------hHHHHHhhccc
Confidence 11222 677765 4667765 55665 699999999999999876 24444444445
Q ss_pred CCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 360 AKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 360 ~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
..|+|+.=+|.-+ +||++|-|..|+||-+.
T Consensus 437 ~VVNCLEpHP~~P-vLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 437 HVVNCLEPHPHLP-VLASSGIDHDVKIWTPL 466 (559)
T ss_pred ceEeccCCCCCCc-hhhccCCccceeeecCC
Confidence 5899999999999 89999999999999983
No 201
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=1.2e-15 Score=130.14 Aligned_cols=257 Identities=14% Similarity=0.153 Sum_probs=189.0
Q ss_pred eecCCceeEEEEcCCCCcEEEEE-eCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTK-TSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
+.-...|..++|.-++..-+..+ +.+..+..+.+....... .............+|.+++.. +. .|++|-.+|.
T Consensus 52 ~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s--~~~~~~~~~l~~~~I~gl~~~--dg-~Litc~~sG~ 126 (412)
T KOG3881|consen 52 VDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISS--SLDDAKTVSLGTKSIKGLKLA--DG-TLITCVSSGN 126 (412)
T ss_pred cchhhhhhhheeecCCceeEeeccccCcccccccccCCcccc--ccccccccccccccccchhhc--CC-EEEEEecCCc
Confidence 34456788888886654434444 366667777776643221 111122444556777777664 23 7889999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC--CcEEEEECCCCcccccccc---------cCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD--CQLMIWDLRTNQTQQRVKA---------HEK 259 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~---------~~~ 259 (406)
+.+|....+.... ..+..+.. ...+..+.-++....++++|+.. ..+.+||+.+.+.+.+-+. -.-
T Consensus 127 l~~~~~k~~d~hs--s~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPv 203 (412)
T KOG3881|consen 127 LQVRHDKSGDLHS--SKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPV 203 (412)
T ss_pred EEEEeccCCcccc--ccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeee
Confidence 9999988543211 11222332 24566777777788899999998 8899999998755433211 122
Q ss_pred CeeEEEecCC-CCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcc
Q 015484 260 EVNYLSFNPY-NEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE 338 (406)
Q Consensus 260 ~v~~i~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 338 (406)
.++.+.|-+. -.+.||+++.-+.+++||.+.+..|+..+..-..+++++...|.+. ++++|..-|.+..||++.
T Consensus 204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn-~Iy~gn~~g~l~~FD~r~---- 278 (412)
T KOG3881|consen 204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGN-FIYTGNTKGQLAKFDLRG---- 278 (412)
T ss_pred eeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCc-EEEEecccchhheecccC----
Confidence 4567888765 1348999999999999999999999999999999999999999997 699999999999999997
Q ss_pred cccccccCCCCeeEE-EecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 339 QLELDAEDGPPELLF-SHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 339 ~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
..+.. .+.+..+.|.++..+|.++ +++++|-|..|||+|+.+.
T Consensus 279 ----------~kl~g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 279 ----------GKLLGCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred ----------ceeeccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeecccc
Confidence 23333 3678889999999999999 7999999999999999984
No 202
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=9e-16 Score=129.56 Aligned_cols=246 Identities=17% Similarity=0.289 Sum_probs=163.1
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee-CCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK-GHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
+..+..++|++.- ..+|++..|-.|++|+-... . ...++ .....|+|++|-|.+...|+.|+. +-|++
T Consensus 98 ~~dlr~~aWhqH~-~~fava~nddvVriy~ksst--------~-pt~Lks~sQrnvtclawRPlsaselavgCr-~gIci 166 (445)
T KOG2139|consen 98 EIDLRGVAWHQHI-IAFAVATNDDVVRIYDKSST--------C-PTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICI 166 (445)
T ss_pred hcceeeEeechhh-hhhhhhccCcEEEEeccCCC--------C-CceecchhhcceeEEEeccCCcceeeeeec-ceeEE
Confidence 3578889999965 56889999999999998761 1 12232 345679999999988767888876 45899
Q ss_pred EeCCCccCC-cee-----ee--eeeeeccCccEEEEEeeCCCCCEEEEEe-cCCcEEEEECCCCcccccccccCCCeeEE
Q 015484 194 WDVSALAQD-KVI-----DA--MHVYEAHESVVEDVSWHLKNENLFGSAG-DDCQLMIWDLRTNQTQQRVKAHEKEVNYL 264 (406)
Q Consensus 194 wd~~~~~~~-~~~-----~~--~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~i 264 (406)
|........ +.+ .+ +....+| .+|++++|++ ++..+++++ .|..|.|||..++..+.......+.+.-+
T Consensus 167 W~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slL 244 (445)
T KOG2139|consen 167 WSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLL 244 (445)
T ss_pred EEcCcccccccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeE
Confidence 987642211 110 01 1122333 6899999999 566666665 67889999999988766554556778889
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 344 (406)
.|+|++. +|++++-|+..++|.............+ .+.|...+|+|.|+.+|.+++.. -++|.+...++.......
T Consensus 245 kwSPdgd-~lfaAt~davfrlw~e~q~wt~erw~lg-sgrvqtacWspcGsfLLf~~sgs--p~lysl~f~~~~~~~~~~ 320 (445)
T KOG2139|consen 245 KWSPDGD-VLFAATCDAVFRLWQENQSWTKERWILG-SGRVQTACWSPCGSFLLFACSGS--PRLYSLTFDGEDSVFLRP 320 (445)
T ss_pred EEcCCCC-EEEEecccceeeeehhcccceecceecc-CCceeeeeecCCCCEEEEEEcCC--ceEEEEeecCCCccccCc
Confidence 9999999 7888889999999965443322333333 45899999999999878777655 445555543332222111
Q ss_pred cCC-CCeeEEEe------cC---CCCCeeeEEeCCCCCcEEEE
Q 015484 345 EDG-PPELLFSH------GG---HKAKISDFSWNKNDPWVISS 377 (406)
Q Consensus 345 ~~~-~~~~~~~~------~~---h~~~v~~~~~s~~~~~~l~s 377 (406)
... ...++..+ .+ ..+.+.+++|.|.|.|+.++
T Consensus 321 ~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~ 363 (445)
T KOG2139|consen 321 QSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVI 363 (445)
T ss_pred ccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEE
Confidence 000 00111111 11 14578899999999964443
No 203
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=7.6e-17 Score=138.68 Aligned_cols=198 Identities=17% Similarity=0.178 Sum_probs=150.5
Q ss_pred eEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCC
Q 015484 119 NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSA 198 (406)
Q Consensus 119 ~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~ 198 (406)
.+++|+++| ..+++|+.||++|||+... .........|...|.++.|+|+++ +|++.+.| ..+||++++
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps--------~~t~l~e~~~~~eV~DL~FS~dgk-~lasig~d-~~~VW~~~~ 216 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPS--------MLTILEEIAHHAEVKDLDFSPDGK-FLASIGAD-SARVWSVNT 216 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCc--------chhhhhhHhhcCccccceeCCCCc-EEEEecCC-ceEEEEecc
Confidence 678999998 6899999999999999876 344666778999999999999999 99999999 899999998
Q ss_pred ccCCceeeeeeeeeccCccEEEEEeeCCCC-----CEEEEEecCCcEEEEECCCCcc-----cccccccCCCeeEEEecC
Q 015484 199 LAQDKVIDAMHVYEAHESVVEDVSWHLKNE-----NLFGSAGDDCQLMIWDLRTNQT-----QQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~-----~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~v~~i~~~~ 268 (406)
+.......+ .........+.|+. ++ .+++....-+.|+.||+..... ..+.......|.+++.++
T Consensus 217 g~~~a~~t~----~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~ 291 (398)
T KOG0771|consen 217 GAALARKTP----FSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD 291 (398)
T ss_pred CchhhhcCC----cccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC
Confidence 743222111 12233455666764 33 2233334556677777653221 111122345799999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
+|+ ++|.|+.||.|.|++..+.+.....-+.|...|+.+.|+|+.++ +++.+.|..+.|..+..
T Consensus 292 dGk-f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~-~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 292 DGK-FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRY-LASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCc-EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCc-ccccccCCceeEEEEee
Confidence 999 99999999999999999887766667789999999999999985 88888898888887764
No 204
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=1.8e-16 Score=140.98 Aligned_cols=215 Identities=17% Similarity=0.173 Sum_probs=154.5
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCC---CCceeeeCCCCCeeEEEecCCCCCeEEEe
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDC---DPDLRLKGHDKEGYGLSWSPFKEGYLVSG 185 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 185 (406)
....+|.++|.|+++.+.+ ..+.+|+-||+|+.|++. ....+.... .....+.||.+.|+.+++++... .|+++
T Consensus 338 ~tfraH~gPVl~v~v~~n~-~~~ysgg~Dg~I~~w~~p-~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~-~Llsc 414 (577)
T KOG0642|consen 338 LTFRAHEGPVLCVVVPSNG-EHCYSGGIDGTIRCWNLP-PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD-RLLSC 414 (577)
T ss_pred EEEecccCceEEEEecCCc-eEEEeeccCceeeeeccC-CCCCcccccCcchhccceeccccceeeeeeccccc-ceeee
Confidence 3455799999999999998 679999999999999887 333222222 33456889999999999999887 89999
Q ss_pred cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccc-------ccC
Q 015484 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK-------AHE 258 (406)
Q Consensus 186 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~ 258 (406)
+.||++++|+...... ..+ .... ..+...++.+-.......++...-+.-.++++.....+..+. ...
T Consensus 415 s~DgTvr~w~~~~~~~-~~f---~~~~-e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~ 489 (577)
T KOG0642|consen 415 SSDGTVRLWEPTEESP-CTF---GEPK-EHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRY 489 (577)
T ss_pred cCCceEEeeccCCcCc-ccc---CCcc-ccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCccccc
Confidence 9999999999876432 111 1111 122334455543222233333333333344444433333331 122
Q ss_pred CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 259 KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 259 ~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
..++.+.++|.+. +.+++..|+.|+++|..++.. +.....|...++++++.|+|. +|++++.||.+++|.+..
T Consensus 490 ~~in~vVs~~~~~-~~~~~hed~~Ir~~dn~~~~~-l~s~~a~~~svtslai~~ng~-~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 490 PQINKVVSHPTAD-ITFTAHEDRSIRFFDNKTGKI-LHSMVAHKDSVTSLAIDPNGP-YLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred CccceEEecCCCC-eeEecccCCceeccccccccc-chheeeccceecceeecCCCc-eEEeecCCceeehhhccc
Confidence 4577889999998 999999999999999998664 888899999999999999998 599999999999999865
No 205
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.71 E-value=4.1e-15 Score=122.34 Aligned_cols=268 Identities=16% Similarity=0.156 Sum_probs=189.3
Q ss_pred eEEEEEeecCCceeEEEEcC---CCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeE
Q 015484 106 VEIAQKIRVDGEVNRARCMP---QKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYL 182 (406)
Q Consensus 106 ~~~~~~~~h~~~v~~i~~~p---~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 182 (406)
+...+...| +.++.+.|+. ++...++-+...|.|.+|......... ...++....-......++.|++.+. .+
T Consensus 61 l~~~q~~dt-s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~--~L~~ls~~ki~~~~~lslD~~~~~~-~i 136 (339)
T KOG0280|consen 61 LDTLQCTDT-STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSV--HLRGLSSKKISVVEALSLDISTSGT-KI 136 (339)
T ss_pred cceeeeecc-cccceeeeeeccCCccceeeeccccceEEEEeeccceeee--eecccchhhhhheeeeEEEeeccCc-eE
Confidence 344445444 4577888874 343367778889999999887643211 1111111111112356889999888 78
Q ss_pred EEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC-ccccc-ccccCCC
Q 015484 183 VSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN-QTQQR-VKAHEKE 260 (406)
Q Consensus 183 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~-~~~~~~~ 260 (406)
+++..+|.+.+-+.... .++..+.++.|.-++....|+..+++++.+|++|+.+..||+|.. +.+.. .+.|...
T Consensus 137 ~vs~s~G~~~~v~~t~~----~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 137 FVSDSRGSISGVYETEM----VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG 212 (339)
T ss_pred EEEcCCCcEEEEeccee----eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence 88989999986554442 234456788899999999999888999999999999999999943 33332 4678899
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccc
Q 015484 261 VNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL 340 (406)
Q Consensus 261 v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 340 (406)
|.+|.-+|..+.++++|+.|-.|++||.|+..+|+..-.. .+.|..+.++|.....++.++.-.-.+|-+......+
T Consensus 213 V~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e-- 289 (339)
T KOG0280|consen 213 VVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-GGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLE-- 289 (339)
T ss_pred eEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc-ccceEEEEecchhhhHHHHHHHhcCceEEEecccccc--
Confidence 9999999887779999999999999999998887765443 4889999999976544555555556777777652221
Q ss_pred cccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEe-CCCcEE-EEeCCCc
Q 015484 341 ELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVA-DDNTVQ-VWQMTDS 392 (406)
Q Consensus 341 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~-~dg~i~-iw~~~~~ 392 (406)
..........|.+-...-.|..... +++|++ .|+.++ +|-.-++
T Consensus 290 -------~~~~~~s~~~hdSl~YG~DWd~~~~-~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 290 -------FQIVLPSDKIHDSLCYGGDWDSKDS-FLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred -------hheeeeccccccceeeccccccccc-eeeeeeccccceeeeeeeccC
Confidence 1134556677888888888865544 677764 577755 8866554
No 206
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=7.4e-16 Score=137.37 Aligned_cols=262 Identities=17% Similarity=0.240 Sum_probs=184.2
Q ss_pred CCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccC--------------CCCCc------eeee
Q 015484 104 PKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQD--------------DCDPD------LRLK 163 (406)
Q Consensus 104 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--------------~~~~~------~~~~ 163 (406)
.++++++.++|+...+.|..+|+|..++|+|...-.|++||+.+.....+. ..... ..+.
T Consensus 40 ~rieLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~Ie 119 (703)
T KOG2321|consen 40 QRIELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIE 119 (703)
T ss_pred HHHHHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceee
Confidence 457778889999999999999999999999999999999999886554321 00000 0111
Q ss_pred CCC-----------CCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEE
Q 015484 164 GHD-----------KEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFG 232 (406)
Q Consensus 164 ~h~-----------~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~ 232 (406)
-|. .....++++.-.- -|+.++....|.-++++.+... ..+....+.+++|..++ -..+|+
T Consensus 120 fHak~G~hy~~RIP~~GRDm~y~~~sc-Dly~~gsg~evYRlNLEqGrfL------~P~~~~~~~lN~v~in~-~hgLla 191 (703)
T KOG2321|consen 120 FHAKYGRHYRTRIPKFGRDMKYHKPSC-DLYLVGSGSEVYRLNLEQGRFL------NPFETDSGELNVVSINE-EHGLLA 191 (703)
T ss_pred ehhhcCeeeeeecCcCCccccccCCCc-cEEEeecCcceEEEEccccccc------cccccccccceeeeecC-ccceEE
Confidence 111 1122333333222 3455555567888888887543 33444568899999998 678999
Q ss_pred EEecCCcEEEEECCCCcccccccc------cC-----CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCC
Q 015484 233 SAGDDCQLMIWDLRTNQTQQRVKA------HE-----KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSH 301 (406)
Q Consensus 233 ~~~~dg~i~i~d~~~~~~~~~~~~------~~-----~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h 301 (406)
+|+.+|.|-+||.|....+..+.. +. ..|+++.|+.+|- .+++|+.+|.+.|||+|.....+..-...
T Consensus 192 ~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa~~pl~~kdh~~ 270 (703)
T KOG2321|consen 192 CGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRASKPLLVKDHGY 270 (703)
T ss_pred ecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEcccCCceeecccCC
Confidence 999999999999998876655521 22 3499999998876 89999999999999999866544444445
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCC
Q 015484 302 TEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADD 381 (406)
Q Consensus 302 ~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~d 381 (406)
.-+|..+.|.+.+..--+.......++|||-..+. ..... .....+.++++-|++. ++.++.++
T Consensus 271 e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk--------------~~asi-Ept~~lND~C~~p~sG-m~f~Ane~ 334 (703)
T KOG2321|consen 271 ELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGK--------------PMASI-EPTSDLNDFCFVPGSG-MFFTANES 334 (703)
T ss_pred ccceeeecccccCCCceEEecchHHhhhcccccCC--------------ceeec-cccCCcCceeeecCCc-eEEEecCC
Confidence 56899999987643223344456789999987622 22222 2345599999999988 78888888
Q ss_pred CcEEEEeCC
Q 015484 382 NTVQVWQMT 390 (406)
Q Consensus 382 g~i~iw~~~ 390 (406)
+.+..|=+.
T Consensus 335 ~~m~~yyiP 343 (703)
T KOG2321|consen 335 SKMHTYYIP 343 (703)
T ss_pred CcceeEEcc
Confidence 887776554
No 207
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.70 E-value=1.4e-16 Score=138.40 Aligned_cols=230 Identities=15% Similarity=0.238 Sum_probs=180.2
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeC
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV 196 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 196 (406)
....+.|+.+| ..++.|+..|.|..+|..+... ...+ .-...|.++.|..+.. ++|++ ....+.|||-
T Consensus 131 GPY~~~ytrnG-rhlllgGrKGHlAa~Dw~t~~L--------~~Ei-~v~Etv~Dv~~LHneq-~~AVA-QK~y~yvYD~ 198 (545)
T KOG1272|consen 131 GPYHLDYTRNG-RHLLLGGRKGHLAAFDWVTKKL--------HFEI-NVMETVRDVTFLHNEQ-FFAVA-QKKYVYVYDN 198 (545)
T ss_pred CCeeeeecCCc-cEEEecCCccceeeeeccccee--------eeee-ehhhhhhhhhhhcchH-HHHhh-hhceEEEecC
Confidence 46778999999 4677888999999999988422 2222 2346788999998776 77766 5678999985
Q ss_pred CCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEE
Q 015484 197 SALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLAT 276 (406)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~ 276 (406)
.. ..+.| +.. ...|..+.|-| .--+|++++..|.++.-|+.+|+.+..+....+.+..++-+|.+. ++-+
T Consensus 199 ~G----tElHC---lk~-~~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na-Vih~ 268 (545)
T KOG1272|consen 199 NG----TELHC---LKR-HIRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA-VIHL 268 (545)
T ss_pred CC----cEEee---hhh-cCchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc-eEEE
Confidence 54 22323 333 35788999999 678889999999999999999999999988888999999999988 9999
Q ss_pred EeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEec
Q 015484 277 ASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG 356 (406)
Q Consensus 277 ~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (406)
|...|+|.+|.... ..|+..+..|.++|.+|++.++|. +++|++.|..++|||++...+ +.....
T Consensus 269 GhsnGtVSlWSP~s-kePLvKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~~~q-------------l~t~~t 333 (545)
T KOG1272|consen 269 GHSNGTVSLWSPNS-KEPLVKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLRNFYQ-------------LHTYRT 333 (545)
T ss_pred cCCCceEEecCCCC-cchHHHHHhcCCCcceEEECCCCc-EEeecccccceeEeeeccccc-------------cceeec
Confidence 99999999999887 456888888999999999999997 599999999999999998332 222222
Q ss_pred CCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 357 GHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 357 ~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
.-+...+++|..| +||. +....|.||.
T Consensus 334 --p~~a~~ls~Sqkg--lLA~-~~G~~v~iw~ 360 (545)
T KOG1272|consen 334 --PHPASNLSLSQKG--LLAL-SYGDHVQIWK 360 (545)
T ss_pred --CCCcccccccccc--ceee-ecCCeeeeeh
Confidence 2346778888776 3544 3456799995
No 208
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=5.2e-15 Score=138.16 Aligned_cols=212 Identities=15% Similarity=0.150 Sum_probs=138.6
Q ss_pred CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC---CeEEEEeCCCccCCceeeeeeeeec
Q 015484 137 SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD---NKICLWDVSALAQDKVIDAMHVYEA 213 (406)
Q Consensus 137 dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~ 213 (406)
+..|++||..... ...+..|...+.+.+|+|+|+ .|+.++.+ ..|.+||+.++... .+..+.+
T Consensus 183 ~~~i~i~d~dg~~---------~~~lt~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~~~----~l~~~~g 248 (429)
T PRK01742 183 PYEVRVADYDGFN---------QFIVNRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGARK----VVASFRG 248 (429)
T ss_pred eEEEEEECCCCCC---------ceEeccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCceE----EEecCCC
Confidence 4689999987621 345667888899999999998 77776543 47999999875321 1222222
Q ss_pred cCccEEEEEeeCCCCCEEEE-EecCCcEEEE--ECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 214 HESVVEDVSWHLKNENLFGS-AGDDCQLMIW--DLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRK 290 (406)
Q Consensus 214 ~~~~i~~i~~~p~~~~~l~~-~~~dg~i~i~--d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~ 290 (406)
....++|+|+ ++.|+. ...+|.+.|| |+.+++ ...+..+...+....|+|+|+.+++++..+|...||++..
T Consensus 249 ---~~~~~~wSPD-G~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 249 ---HNGAPAFSPD-GSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred ---ccCceeECCC-CCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 3346899994 555544 4568876555 665554 3445556667888999999995555555678888888754
Q ss_pred CCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCC
Q 015484 291 MTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKN 370 (406)
Q Consensus 291 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 370 (406)
.......+ .+.. ....|+|+++. |+.++.++ +.+||+..... ..+. ..+ ....+.|+|+
T Consensus 324 ~~~~~~~l-~~~~--~~~~~SpDG~~-ia~~~~~~-i~~~Dl~~g~~------------~~lt--~~~--~~~~~~~sPd 382 (429)
T PRK01742 324 SGGGASLV-GGRG--YSAQISADGKT-LVMINGDN-VVKQDLTSGST------------EVLS--STF--LDESPSISPN 382 (429)
T ss_pred CCCCeEEe-cCCC--CCccCCCCCCE-EEEEcCCC-EEEEECCCCCe------------EEec--CCC--CCCCceECCC
Confidence 33323333 3333 45789999985 66666554 55689876221 1111 111 2356789999
Q ss_pred CCcEEEEEeCCCcEEEEeC
Q 015484 371 DPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 371 ~~~~l~s~~~dg~i~iw~~ 389 (406)
|+ +|+.++.++.+.+|.+
T Consensus 383 G~-~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 383 GI-MIIYSSTQGLGKVLQL 400 (429)
T ss_pred CC-EEEEEEcCCCceEEEE
Confidence 99 5777777888887775
No 209
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.67 E-value=9.1e-14 Score=125.82 Aligned_cols=239 Identities=10% Similarity=0.098 Sum_probs=148.9
Q ss_pred EEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEe-cCCCeEEEEeCCCccCCceeeee
Q 015484 130 LVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSG-SHDNKICLWDVSALAQDKVIDAM 208 (406)
Q Consensus 130 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~ 208 (406)
++++...++.|.+|++.... .......+. +.+....++++|+++ +|+++ ..++.|.+|+++.... +...
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g-----~l~~~~~~~-~~~~~~~l~~spd~~-~lyv~~~~~~~i~~~~~~~~g~---l~~~ 73 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEG-----ALTLLQVVD-VPGQVQPMVISPDKR-HLYVGVRPEFRVLSYRIADDGA---LTFA 73 (330)
T ss_pred EEEEcCCCCCEEEEEECCCC-----ceeeeeEEe-cCCCCccEEECCCCC-EEEEEECCCCcEEEEEECCCCc---eEEe
Confidence 44555778999999996421 122234443 345577899999998 66555 4588999999973211 1111
Q ss_pred eeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCc-c---cccccccCCCeeEEEecCCCCcEEEEEeCCCcEE
Q 015484 209 HVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ-T---QQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVA 284 (406)
Q Consensus 209 ~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~---~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~ 284 (406)
.... .......++|+|++..++++...++.|.+|++.+.. . +..+. +......++++|+++.++++...++.|.
T Consensus 74 ~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~ 151 (330)
T PRK11028 74 AESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIR 151 (330)
T ss_pred eeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEE
Confidence 2111 233466899999544444444468999999997432 1 12222 2344677899999995666666779999
Q ss_pred EEeCCCCCCCc------EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecC-
Q 015484 285 LFDMRKMTVPL------HILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG- 357 (406)
Q Consensus 285 vwd~~~~~~~~------~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~- 357 (406)
+||+....... .... .......+.|+|++++++++...++.|.+|++....... ..+.....
T Consensus 152 v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~----------~~~~~~~~~ 220 (330)
T PRK11028 152 LFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI----------ECVQTLDMM 220 (330)
T ss_pred EEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE----------EEEEEEecC
Confidence 99997633211 1111 234567899999998644444459999999997421110 11111111
Q ss_pred -----CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 358 -----HKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 358 -----h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
+......+.++|++++++++...++.|.+|++..
T Consensus 221 p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 221 PADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred CCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 1123446899999996555545688999999854
No 210
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.5e-13 Score=116.37 Aligned_cols=208 Identities=16% Similarity=0.245 Sum_probs=140.2
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc----CC--CCCceeeeCCCCCeeEEEecCCCCCeEEEecC
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ----DD--CDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~----~~--~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
-...|+|++|-|.+...|++|...| |.||.......... .. ...+....+| .+|++++|+++|. .+++++.
T Consensus 139 sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS~ 215 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTASF 215 (445)
T ss_pred hhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC-EEeeccc
Confidence 3478999999998878899999887 99998875432211 01 1112233345 6899999999998 8888775
Q ss_pred -CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEe
Q 015484 188 -DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSF 266 (406)
Q Consensus 188 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~ 266 (406)
|..|.|||..++...... ....+.+.-+.|+| ++..|.+++.|+..++|...............+.|....|
T Consensus 216 gsssi~iWdpdtg~~~pL~------~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacW 288 (445)
T KOG2139|consen 216 GSSSIMIWDPDTGQKIPLI------PKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACW 288 (445)
T ss_pred CcceEEEEcCCCCCccccc------ccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceeeeee
Confidence 568999999987653221 12356788899999 6777778899999999965543332233334558999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCCC--------------------cEEecC---CCCCeEEEEEcCCCCCEEEEEeC
Q 015484 267 NPYNEWVLATASSDTTVALFDMRKMTVP--------------------LHILSS---HTEEVFQVEWDPNHETVLASSAD 323 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~--------------------~~~~~~---h~~~v~~i~~~p~~~~~l~s~~~ 323 (406)
+|.|+.+|++.+... ++|.+.-..++ +....+ -.+.+.+++|.|.|.+ ||+.-.
T Consensus 289 spcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGey-Lav~fK 365 (445)
T KOG2139|consen 289 SPCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEY-LAVIFK 365 (445)
T ss_pred cCCCCEEEEEEcCCc--eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCE-EEEEEc
Confidence 999997777776544 44433221110 000111 1357899999999986 666554
Q ss_pred CC--------cEEEEeCCC
Q 015484 324 DR--------RLMVWDLNR 334 (406)
Q Consensus 324 dg--------~i~iwd~~~ 334 (406)
.+ .|.+||.+.
T Consensus 366 g~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 366 GQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred CCchhhhhhhhhhhhcccc
Confidence 33 366777765
No 211
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=1.2e-14 Score=135.80 Aligned_cols=222 Identities=13% Similarity=0.113 Sum_probs=143.3
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCC---CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEe-c
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSS---CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSG-S 186 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~-~ 186 (406)
...|...+...+|+|++. .|+..+.+ ..|++||+.+... ..+..+.+| ..+++|+|+|+ .|+.+ +
T Consensus 199 lt~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~~------~~l~~~~g~---~~~~~wSPDG~-~La~~~~ 267 (429)
T PRK01742 199 VNRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGAR------KVVASFRGH---NGAPAFSPDGS-RLAFASS 267 (429)
T ss_pred eccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCce------EEEecCCCc---cCceeECCCCC-EEEEEEe
Confidence 345778899999999995 56655543 4799999976321 112223333 34689999998 66655 5
Q ss_pred CCCeEEEE--eCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEE
Q 015484 187 HDNKICLW--DVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYL 264 (406)
Q Consensus 187 ~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i 264 (406)
.+|.+.|| |+.++. ...+..+...+....|+|++..++++...+|...+|++...........+.. ...
T Consensus 268 ~~g~~~Iy~~d~~~~~-------~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~ 338 (429)
T PRK01742 268 KDGVLNIYVMGANGGT-------PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSA 338 (429)
T ss_pred cCCcEEEEEEECCCCC-------eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCc
Confidence 68876666 544432 1223445666888999995444555555678888888754322112212332 457
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 344 (406)
+|+|+|+ .|+..+.++ +.+||+.++.. ..+..+ .....+.|+|+++ +|+.++.++.+.+|++....
T Consensus 339 ~~SpDG~-~ia~~~~~~-i~~~Dl~~g~~--~~lt~~-~~~~~~~~sPdG~-~i~~~s~~g~~~~l~~~~~~-------- 404 (429)
T PRK01742 339 QISADGK-TLVMINGDN-VVKQDLTSGST--EVLSST-FLDESPSISPNGI-MIIYSSTQGLGKVLQLVSAD-------- 404 (429)
T ss_pred cCCCCCC-EEEEEcCCC-EEEEECCCCCe--EEecCC-CCCCCceECCCCC-EEEEEEcCCCceEEEEEECC--------
Confidence 8999999 666666654 66799987653 222221 2335678999998 57888888888888764311
Q ss_pred cCCCCeeEEEecCCCCCeeeEEeCCC
Q 015484 345 EDGPPELLFSHGGHKAKISDFSWNKN 370 (406)
Q Consensus 345 ~~~~~~~~~~~~~h~~~v~~~~~s~~ 370 (406)
......+.+|.+.+...+|+|-
T Consensus 405 ----G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 405 ----GRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ----CCceEEccCCCCCCCCcccCCC
Confidence 1344555677788999999985
No 212
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.66 E-value=1.6e-15 Score=122.80 Aligned_cols=162 Identities=20% Similarity=0.337 Sum_probs=123.0
Q ss_pred CCeeEEEecCCCC--CeEEEecCCCeEEEEeCCCccCCce----eeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcE
Q 015484 167 KEGYGLSWSPFKE--GYLVSGSHDNKICLWDVSALAQDKV----IDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQL 240 (406)
Q Consensus 167 ~~v~~l~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i 240 (406)
+.+.+..|..... -+|++|.++|.+.+||+.++...-. .+.......|..+|.++.+.+.. ..=++|+.+..+
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~dkl 229 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGADDKL 229 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh-cCCcCCCccccc
Confidence 3455555443221 1578888999999999998632211 12234456789999999998743 333477888889
Q ss_pred EEEECCCCcc----cccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCC
Q 015484 241 MIWDLRTNQT----QQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHET 316 (406)
Q Consensus 241 ~i~d~~~~~~----~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~ 316 (406)
..|++..... ...+......|..+..-|+++ ++|+++.|+.|+||..+++. |+..++.|+..|++++|+|+.+
T Consensus 230 ~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl~-pLAVLkyHsagvn~vAfspd~~- 306 (323)
T KOG0322|consen 230 VMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTLN-PLAVLKYHSAGVNAVAFSPDCE- 306 (323)
T ss_pred eeeeeccccCcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccCC-chhhhhhhhcceeEEEeCCCCc-
Confidence 9998875421 122233455688899999999 99999999999999999966 5999999999999999999976
Q ss_pred EEEEEeCCCcEEEEeC
Q 015484 317 VLASSADDRRLMVWDL 332 (406)
Q Consensus 317 ~l~s~~~dg~i~iwd~ 332 (406)
++|+++.|++|.+|++
T Consensus 307 lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 307 LMAAASKDARISLWKL 322 (323)
T ss_pred hhhhccCCceEEeeec
Confidence 7999999999999986
No 213
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.65 E-value=3.8e-15 Score=131.91 Aligned_cols=198 Identities=15% Similarity=0.232 Sum_probs=151.3
Q ss_pred EEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCcc---------
Q 015484 130 LVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALA--------- 200 (406)
Q Consensus 130 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~--------- 200 (406)
-+..|-..|.|.+.|........ -. .....-.+..|+|+.|-|.+...++.+-.+|.+.+||.....
T Consensus 187 dllIGf~tGqvq~idp~~~~~sk--lf--ne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSK--LF--NEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred ceEEeeccCceEEecchhhHHHH--hh--hhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 46678888999998876621100 00 000111237899999999888788888899999999864310
Q ss_pred --CCcee-----------eeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEec
Q 015484 201 --QDKVI-----------DAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFN 267 (406)
Q Consensus 201 --~~~~~-----------~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~ 267 (406)
....+ .++..+....+.|+..+|+| ++.+||+.+.||.+||||..+.+.+..++..-+...|++|+
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS 341 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence 00000 12223333456789999999 89999999999999999999998888887778899999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCC----------------------------------
Q 015484 268 PYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPN---------------------------------- 313 (406)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~---------------------------------- 313 (406)
|||+ ++++|++|--|.||.+...+. +..-.+|++.|+.++|.|-
T Consensus 342 PDGK-yIvtGGEDDLVtVwSf~erRV-VARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~ 419 (636)
T KOG2394|consen 342 PDGK-YIVTGGEDDLVTVWSFEERRV-VARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSA 419 (636)
T ss_pred CCcc-EEEecCCcceEEEEEeccceE-EEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCc
Confidence 9999 999999999999999987554 8888999999999999831
Q ss_pred -------------CCCEEEEEeCCCcEEEEeCCC
Q 015484 314 -------------HETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 314 -------------~~~~l~s~~~dg~i~iwd~~~ 334 (406)
-.+-|.+.+.|..+.+||+..
T Consensus 420 ~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlte 453 (636)
T KOG2394|consen 420 EGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTE 453 (636)
T ss_pred CCCcccccccccceEEEeecccccceEEEEecch
Confidence 123578889999999999865
No 214
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.63 E-value=4.3e-14 Score=128.41 Aligned_cols=213 Identities=14% Similarity=0.199 Sum_probs=151.4
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc---C-----CCCC-------------------ceeee
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ---D-----DCDP-------------------DLRLK 163 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~---~-----~~~~-------------------~~~~~ 163 (406)
..+|++.|+|++|+.+| ..+|+|+.|..|.||+.+-.....- . ...| .....
T Consensus 49 LKgHKDtVycVAys~dG-krFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~ 127 (1081)
T KOG1538|consen 49 LKGHKDTVYCVAYAKDG-KRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVS 127 (1081)
T ss_pred cccccceEEEEEEccCC-ceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHH
Confidence 45799999999999998 5799999999999998654321110 0 0000 00011
Q ss_pred C--CCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCC----CCEEEEEecC
Q 015484 164 G--HDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKN----ENLFGSAGDD 237 (406)
Q Consensus 164 ~--h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~----~~~l~~~~~d 237 (406)
. ....|.+++|..+|. +|+.|-.+|+|.+-+-...... .+....+..++|.+++|+|.. ..++++....
T Consensus 128 K~kss~R~~~CsWtnDGq-ylalG~~nGTIsiRNk~gEek~----~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~ 202 (1081)
T KOG1538|consen 128 KHKSSSRIICCSWTNDGQ-YLALGMFNGTISIRNKNGEEKV----KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWG 202 (1081)
T ss_pred hhhhheeEEEeeecCCCc-EEEEeccCceEEeecCCCCcce----EEeCCCCCCCCceEEEecCCCCCCccceEEEEecc
Confidence 1 124577888999888 9999999999998864332211 122233467899999999853 3577888888
Q ss_pred CcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCE
Q 015484 238 CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETV 317 (406)
Q Consensus 238 g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~ 317 (406)
.++.++.+. |+.+..-..-.-...|+++.++|+ +++.|+.|+.+++|-... ..+.++-.....|..++..|++++
T Consensus 203 qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGE-y~LiGGsdk~L~~fTR~G--vrLGTvg~~D~WIWtV~~~PNsQ~- 277 (1081)
T KOG1538|consen 203 QTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGE-YILLGGSDKQLSLFTRDG--VRLGTVGEQDSWIWTVQAKPNSQY- 277 (1081)
T ss_pred ceeEEEEec-ceeecccccCCCCchhheeccCCc-EEEEccCCCceEEEeecC--eEEeeccccceeEEEEEEccCCce-
Confidence 888888875 444433333344567899999999 888899999999996442 225555556789999999999985
Q ss_pred EEEEeCCCcEEEEeCCC
Q 015484 318 LASSADDRRLMVWDLNR 334 (406)
Q Consensus 318 l~s~~~dg~i~iwd~~~ 334 (406)
++.|+.||+|-.|++..
T Consensus 278 v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 278 VVVGCQDGTIACYNLIF 294 (1081)
T ss_pred EEEEEccCeeehhhhHH
Confidence 89999999999998754
No 215
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=8.3e-14 Score=130.42 Aligned_cols=247 Identities=18% Similarity=0.236 Sum_probs=171.8
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCC--CeEEEecCCCeEEE
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKE--GYLVSGSHDNKICL 193 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~--~~l~s~~~dg~i~i 193 (406)
..-....|+++++.+++ . ....|.||...++ .++..+.+|..++..+.+.|... .++.+++.||.|++
T Consensus 17 ~~~~~avfSnD~k~l~~-~-~~~~V~VyS~~Tg--------~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~v 86 (792)
T KOG1963|consen 17 GNKSPAVFSNDAKFLFL-C-TGNFVKVYSTATG--------ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRV 86 (792)
T ss_pred ceecccccccCCcEEEE-e-eCCEEEEEecchH--------hhhhhcccccCccceeeecCCCccceEEEEEecCccEEE
Confidence 33344568888854443 3 3567999999984 33668999999999999988765 47789999999999
Q ss_pred EeCCCccCCceeee-----------------------------eee----------------e--------eccCccEEE
Q 015484 194 WDVSALAQDKVIDA-----------------------------MHV----------------Y--------EAHESVVED 220 (406)
Q Consensus 194 wd~~~~~~~~~~~~-----------------------------~~~----------------~--------~~~~~~i~~ 220 (406)
||...+...+.+.. +.. + ..+. .-.+
T Consensus 87 wd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~-~~~~ 165 (792)
T KOG1963|consen 87 WDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ-EPKS 165 (792)
T ss_pred ecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhc-CCcc
Confidence 99877533221100 000 0 0000 0123
Q ss_pred EEeeCCCCCEEEEEecCCcEEEEECCCCccc---ccc-cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCC---CCC
Q 015484 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ---QRV-KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRK---MTV 293 (406)
Q Consensus 221 i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~-~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~---~~~ 293 (406)
|.+++ .+.+. ....+..+.+|....+... ... ..|.-.+++.+++|.++ ++|+|..||.|.+|.--. ...
T Consensus 166 I~~~~-~ge~~-~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~~~~~ 242 (792)
T KOG1963|consen 166 IVDNN-SGEFK-GIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNER-YLAAGDSDGRILVWRDFGSSDDSE 242 (792)
T ss_pred EEEcC-CceEE-EEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccc-eEEEeccCCcEEEEeccccccccc
Confidence 34443 23333 3344556888887764411 111 34666689999999999 999999999999995332 223
Q ss_pred CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCc
Q 015484 294 PLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPW 373 (406)
Q Consensus 294 ~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 373 (406)
..+.+.-|...|++++|+++|. +|++|+..|.+.+|.+.+.++ +++ ..-.++|..+.++|++.
T Consensus 243 t~t~lHWH~~~V~~L~fS~~G~-~LlSGG~E~VLv~Wq~~T~~k------------qfL---PRLgs~I~~i~vS~ds~- 305 (792)
T KOG1963|consen 243 TCTLLHWHHDEVNSLSFSSDGA-YLLSGGREGVLVLWQLETGKK------------QFL---PRLGSPILHIVVSPDSD- 305 (792)
T ss_pred cceEEEecccccceeEEecCCc-eEeecccceEEEEEeecCCCc------------ccc---cccCCeeEEEEEcCCCC-
Confidence 3567788999999999999998 499999999999999988432 222 22356899999999999
Q ss_pred EEEEEeCCCcEEEEeCCCcc
Q 015484 374 VISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 374 ~l~s~~~dg~i~iw~~~~~~ 393 (406)
+.+...+|+.|++-...+-.
T Consensus 306 ~~sl~~~DNqI~li~~~dl~ 325 (792)
T KOG1963|consen 306 LYSLVLEDNQIHLIKASDLE 325 (792)
T ss_pred eEEEEecCceEEEEeccchh
Confidence 57777789999999886543
No 216
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.63 E-value=1.8e-12 Score=110.12 Aligned_cols=196 Identities=15% Similarity=0.226 Sum_probs=140.4
Q ss_pred eeEEEEcCCCCcEEEEEeCC--CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 118 VNRARCMPQKPNLVGTKTSS--CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 118 v~~i~~~p~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
|.-+-|+. .++|..+.+ ..+++++...... +..+ ....+|.+|.++. + +|+.+=.+ .|.|||
T Consensus 49 IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~--------ICe~-~fpt~IL~VrmNr--~-RLvV~Lee-~IyIyd 112 (391)
T KOG2110|consen 49 IVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTT--------ICEI-FFPTSILAVRMNR--K-RLVVCLEE-SIYIYD 112 (391)
T ss_pred EEEeeccc---ceeEEEecCCCceEEEEEcccCce--------EEEE-ecCCceEEEEEcc--c-eEEEEEcc-cEEEEe
Confidence 34444554 345544443 3588888876321 2222 2356789999975 3 56666444 499999
Q ss_pred CCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEE--ecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcE
Q 015484 196 VSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSA--GDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWV 273 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 273 (406)
++..+.. ..+.....+...+.++.+++ .+.+++-- ...|.|.+||+.+-+.+..+.+|++.+-+++|+++|. +
T Consensus 113 I~~MklL---hTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~-l 187 (391)
T KOG2110|consen 113 IKDMKLL---HTIETTPPNPKGLCALSPNN-ANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGT-L 187 (391)
T ss_pred cccceee---hhhhccCCCccceEeeccCC-CCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCC-E
Confidence 9986433 22233334555676666665 44566543 3578999999999999999999999999999999999 9
Q ss_pred EEEEeCCC-cEEEEeCCCCCCCcEEecCCC--CCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCC
Q 015484 274 LATASSDT-TVALFDMRKMTVPLHILSSHT--EEVFQVEWDPNHETVLASSADDRRLMVWDLNRIG 336 (406)
Q Consensus 274 l~~~~~dg-~i~vwd~~~~~~~~~~~~~h~--~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 336 (406)
||+++..| .|||+.+.++.. +..+.... ..|.+++|+|+++ +|++.+..++|.||.+....
T Consensus 188 lATASeKGTVIRVf~v~~G~k-l~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 188 LATASEKGTVIRVFSVPEGQK-LYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEeccCceEEEEEEcCCccE-eeeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEecccc
Confidence 99999999 579999988765 55554322 3688999999997 68888999999999997644
No 217
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=3.8e-14 Score=121.06 Aligned_cols=209 Identities=16% Similarity=0.182 Sum_probs=159.7
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC--CeEE
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD--NKIC 192 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d--g~i~ 192 (406)
.+.|..++... ..|++|-.+|.+.+|........ ..+...+..+ ..+..+.-++..++++++|+.. ..+.
T Consensus 105 ~~~I~gl~~~d---g~Litc~~sG~l~~~~~k~~d~h----ss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lk 176 (412)
T KOG3881|consen 105 TKSIKGLKLAD---GTLITCVSSGNLQVRHDKSGDLH----SSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELK 176 (412)
T ss_pred cccccchhhcC---CEEEEEecCCcEEEEeccCCccc----cccceeeecC-CceeeeccCCCCCceEecCchhccccee
Confidence 34455554432 35888899999999999864321 1233444433 4567788888777678889998 8899
Q ss_pred EEeCCCccCCceeeeeee--e-eccCccEEEEEeeCCC--CCEEEEEecCCcEEEEECCCC-cccccccccCCCeeEEEe
Q 015484 193 LWDVSALAQDKVIDAMHV--Y-EAHESVVEDVSWHLKN--ENLFGSAGDDCQLMIWDLRTN-QTQQRVKAHEKEVNYLSF 266 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~--~-~~~~~~i~~i~~~p~~--~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~ 266 (406)
+||++.......-+.+.. + -.-.-.++++.|-+ + ...|++++.-+.+++||++.+ +++..+.....+++++..
T Consensus 177 iwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l 255 (412)
T KOG3881|consen 177 IWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGL 255 (412)
T ss_pred eeecccceeeeeccCCCCccccceeeeeeccceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeee
Confidence 999988632211111000 0 01134567888987 5 788999999999999999975 457777777899999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 267 NPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
.|.+. ++.+|..-|.+..||+|.+......+.+-.+.|.+|..+|.++ ++++++-|..|+|+|+.+
T Consensus 256 ~p~gn-~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 256 TPSGN-FIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKT 321 (412)
T ss_pred cCCCc-EEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeeccc
Confidence 99999 8999999999999999998877777899999999999999997 799999999999999987
No 218
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.62 E-value=4.8e-12 Score=114.77 Aligned_cols=302 Identities=11% Similarity=0.128 Sum_probs=189.1
Q ss_pred EEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCCceeEEEEcCCCCcEEEEEe---CCCeE
Q 015484 64 FVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKT---SSCEV 140 (406)
Q Consensus 64 ~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~---~dg~i 140 (406)
+++|+++. +..+.|++.++. .+ .+.+.......-......++++|++..+.++.. .+|.|
T Consensus 2 ~~vgsy~~-~~~~gI~~~~~d-----------~~-----~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v 64 (345)
T PF10282_consen 2 LYVGSYTN-GKGGGIYVFRFD-----------EE-----TGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGV 64 (345)
T ss_dssp EEEEECCS-SSSTEEEEEEEE-----------TT-----TTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEE
T ss_pred EEEEcCCC-CCCCcEEEEEEc-----------CC-----CCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCE
Confidence 67889875 555788877664 11 245766666666778888999999954444443 36799
Q ss_pred EEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec-CCCeEEEEeCCCccCCceeeeeeeee-------
Q 015484 141 YVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS-HDNKICLWDVSALAQDKVIDAMHVYE------- 212 (406)
Q Consensus 141 ~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~------- 212 (406)
..|++..... ....+............++.+|+++ +|+++. .+|.|.++++................
T Consensus 65 ~~~~i~~~~g----~L~~~~~~~~~g~~p~~i~~~~~g~-~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~ 139 (345)
T PF10282_consen 65 SSYRIDPDTG----TLTLLNSVPSGGSSPCHIAVDPDGR-FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPD 139 (345)
T ss_dssp EEEEEETTTT----EEEEEEEEEESSSCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTT
T ss_pred EEEEECCCcc----eeEEeeeeccCCCCcEEEEEecCCC-EEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccc
Confidence 9999887411 1122333332334456799999998 666664 58999999998742211111111110
Q ss_pred -ccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc-c---ccc-cccCCCeeEEEecCCCCcEEEEEeCCCcEEEE
Q 015484 213 -AHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT-Q---QRV-KAHEKEVNYLSFNPYNEWVLATASSDTTVALF 286 (406)
Q Consensus 213 -~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~---~~~-~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vw 286 (406)
.......++.|+|++..++++.-....|.+|++..... + ..+ ......-+.+.|+|+++.++++...++.|.++
T Consensus 140 rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~ 219 (345)
T PF10282_consen 140 RQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVF 219 (345)
T ss_dssp TTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred ccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEE
Confidence 12345788999995444554444556799999976552 2 112 12345678899999999666777778899999
Q ss_pred eCCCCCCC---cEEecC------CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecC
Q 015484 287 DMRKMTVP---LHILSS------HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG 357 (406)
Q Consensus 287 d~~~~~~~---~~~~~~------h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (406)
++....-. +..... .......|+++|+++++.++....+.|.+|++..... ....+.....
T Consensus 220 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g----------~l~~~~~~~~ 289 (345)
T PF10282_consen 220 DYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG----------TLTLVQTVPT 289 (345)
T ss_dssp EEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT----------TEEEEEEEEE
T ss_pred eecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC----------ceEEEEEEeC
Confidence 98832211 111111 1126889999999998777777889999999954211 1233333332
Q ss_pred CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC--CCcccCCC
Q 015484 358 HKAKISDFSWNKNDPWVISSVADDNTVQVWQM--TDSIYRDD 397 (406)
Q Consensus 358 h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~--~~~~~~~~ 397 (406)
.......++++|+|++++++...++.|.+|++ .++.+...
T Consensus 290 ~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 290 GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence 33458899999999987777778889999977 46665443
No 219
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.62 E-value=6.4e-14 Score=115.38 Aligned_cols=157 Identities=14% Similarity=0.368 Sum_probs=103.8
Q ss_pred EEEEeeCCCCCEEEEEec---------CCcEEEEECCCC-cccccccc-cCCCeeEEEecCCCCcEEEE-EeCCCcEEEE
Q 015484 219 EDVSWHLKNENLFGSAGD---------DCQLMIWDLRTN-QTQQRVKA-HEKEVNYLSFNPYNEWVLAT-ASSDTTVALF 286 (406)
Q Consensus 219 ~~i~~~p~~~~~l~~~~~---------dg~i~i~d~~~~-~~~~~~~~-~~~~v~~i~~~~~~~~~l~~-~~~dg~i~vw 286 (406)
..+.|+|.+..+++.... -|...+|-++.. .....+.. ..++|.+++|+|++..++++ |..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 356788855555544441 133555555332 22333322 34579999999999844333 4456799999
Q ss_pred eCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeC---CCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCee
Q 015484 287 DMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSAD---DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKIS 363 (406)
Q Consensus 287 d~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 363 (406)
|++ ..++..+ +...++.|.|+|+|+. |++++. .|.|.+||.+. ...+.... | ..++
T Consensus 89 d~~--~~~i~~~--~~~~~n~i~wsP~G~~-l~~~g~~n~~G~l~~wd~~~--------------~~~i~~~~-~-~~~t 147 (194)
T PF08662_consen 89 DVK--GKKIFSF--GTQPRNTISWSPDGRF-LVLAGFGNLNGDLEFWDVRK--------------KKKISTFE-H-SDAT 147 (194)
T ss_pred cCc--ccEeEee--cCCCceEEEECCCCCE-EEEEEccCCCcEEEEEECCC--------------CEEeeccc-c-CcEE
Confidence 997 2334444 4577899999999985 666553 46799999985 23343332 3 3478
Q ss_pred eEEeCCCCCcEEEEEe-----CCCcEEEEeCCCcccCC
Q 015484 364 DFSWNKNDPWVISSVA-----DDNTVQVWQMTDSIYRD 396 (406)
Q Consensus 364 ~~~~s~~~~~~l~s~~-----~dg~i~iw~~~~~~~~~ 396 (406)
.++|+|+|++++.+.+ .|+.++||++....+..
T Consensus 148 ~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~ 185 (194)
T PF08662_consen 148 DVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYK 185 (194)
T ss_pred EEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEe
Confidence 9999999997555544 38999999998776644
No 220
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=6.1e-13 Score=124.73 Aligned_cols=220 Identities=12% Similarity=0.117 Sum_probs=143.4
Q ss_pred CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC---CCeEEEEeCCCccCCceeeeeeeeecc
Q 015484 138 CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH---DNKICLWDVSALAQDKVIDAMHVYEAH 214 (406)
Q Consensus 138 g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~ 214 (406)
..|.++|.... ....+..|...+.+.+|+|+|+ .|+..+. +..|.+||+.++.. ..+..+
T Consensus 182 ~~l~~~d~dg~---------~~~~lt~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~~-------~~l~~~ 244 (435)
T PRK05137 182 KRLAIMDQDGA---------NVRYLTDGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQR-------ELVGNF 244 (435)
T ss_pred eEEEEECCCCC---------CcEEEecCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCcE-------EEeecC
Confidence 36888887552 2345667888999999999998 7776653 46899999987642 222334
Q ss_pred CccEEEEEeeCCCCCEEEEEecCCc--EEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEe-CCC--cEEEEeCC
Q 015484 215 ESVVEDVSWHLKNENLFGSAGDDCQ--LMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS-SDT--TVALFDMR 289 (406)
Q Consensus 215 ~~~i~~i~~~p~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~dg--~i~vwd~~ 289 (406)
.+.+....|+|++..++++.+.++. |.+||+.++.. ..+..+........|+|+|+ .|+..+ .+| .|+++|+.
T Consensus 245 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~-~i~f~s~~~g~~~Iy~~d~~ 322 (435)
T PRK05137 245 PGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGS-QIVFESDRSGSPQLYVMNAD 322 (435)
T ss_pred CCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCC-EEEEEECCCCCCeEEEEECC
Confidence 5567788999965555566666665 77779887654 34444555667799999999 555444 444 68888876
Q ss_pred CCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCC--CcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEe
Q 015484 290 KMTVPLHILSSHTEEVFQVEWDPNHETVLASSADD--RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSW 367 (406)
Q Consensus 290 ~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 367 (406)
... ...+..+...+....|+|+|+.++++.... ..|.+||+..... ..+ . .+ ..+....|
T Consensus 323 g~~--~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~------------~~l-t-~~--~~~~~p~~ 384 (435)
T PRK05137 323 GSN--PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE------------RIL-T-SG--FLVEGPTW 384 (435)
T ss_pred CCC--eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce------------Eec-c-CC--CCCCCCeE
Confidence 543 344444456677789999998644444333 3577788654111 111 1 11 23678899
Q ss_pred CCCCCcEEEEEeCC-----CcEEEEeCCCccc
Q 015484 368 NKNDPWVISSVADD-----NTVQVWQMTDSIY 394 (406)
Q Consensus 368 s~~~~~~l~s~~~d-----g~i~iw~~~~~~~ 394 (406)
+|+|+.+++++... ..+.++++..+..
T Consensus 385 spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 385 APNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred CCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 99999655555433 2577778776543
No 221
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=9.8e-13 Score=122.64 Aligned_cols=218 Identities=12% Similarity=0.082 Sum_probs=135.5
Q ss_pred eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec---CCCeEEEEeCCCccCCceeeeeeeeeccC
Q 015484 139 EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS---HDNKICLWDVSALAQDKVIDAMHVYEAHE 215 (406)
Q Consensus 139 ~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 215 (406)
.|.++|..... ...+..+...+.+.+|+|+|+ .|+..+ .+..|.+|++.+++.. .+.. ..
T Consensus 180 ~l~~~d~dg~~---------~~~lt~~~~~~~~p~wSPDG~-~la~~s~~~g~~~i~i~dl~~G~~~----~l~~---~~ 242 (429)
T PRK03629 180 ELRVSDYDGYN---------QFVVHRSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAVR----QVAS---FP 242 (429)
T ss_pred eEEEEcCCCCC---------CEEeecCCCceeeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCCeE----EccC---CC
Confidence 68888887621 233455677899999999998 666543 2457999999775421 1122 22
Q ss_pred ccEEEEEeeCCCCCEEEEEecCC--cEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEe-CCCcEEEE--eCCC
Q 015484 216 SVVEDVSWHLKNENLFGSAGDDC--QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS-SDTTVALF--DMRK 290 (406)
Q Consensus 216 ~~i~~i~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~dg~i~vw--d~~~ 290 (406)
..+....|+|++..++++.+.+| .|++||+.+++... +..+...+....|+|+|+ .|+..+ .++...+| |+..
T Consensus 243 ~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~-~I~f~s~~~g~~~Iy~~d~~~ 320 (429)
T PRK03629 243 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQ-NLAYTSDQAGRPQVYKVNING 320 (429)
T ss_pred CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCC-EEEEEeCCCCCceEEEEECCC
Confidence 33456899995544554545555 48899998876543 333445678899999999 554444 44544444 6654
Q ss_pred CCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC--cEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeC
Q 015484 291 MTVPLHILSSHTEEVFQVEWDPNHETVLASSADDR--RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWN 368 (406)
Q Consensus 291 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 368 (406)
+. ...+..+........|+|+|+.+++++..++ .|.+||+..... ..+. .. .......|+
T Consensus 321 g~--~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~------------~~Lt--~~--~~~~~p~~S 382 (429)
T PRK03629 321 GA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV------------QVLT--DT--FLDETPSIA 382 (429)
T ss_pred CC--eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe------------EEeC--CC--CCCCCceEC
Confidence 33 3444444455677899999986444444443 478888865221 1111 11 123467899
Q ss_pred CCCCcEEEEEeCCCc---EEEEeCCCccc
Q 015484 369 KNDPWVISSVADDNT---VQVWQMTDSIY 394 (406)
Q Consensus 369 ~~~~~~l~s~~~dg~---i~iw~~~~~~~ 394 (406)
|+|++ |+.++.++. +.+++++.+..
T Consensus 383 pDG~~-i~~~s~~~~~~~l~~~~~~G~~~ 410 (429)
T PRK03629 383 PNGTM-VIYSSSQGMGSVLNLVSTDGRFK 410 (429)
T ss_pred CCCCE-EEEEEcCCCceEEEEEECCCCCe
Confidence 99995 555555553 77778865543
No 222
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.61 E-value=9.1e-15 Score=134.10 Aligned_cols=278 Identities=20% Similarity=0.390 Sum_probs=201.9
Q ss_pred CCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCC-CCeeEEEecCCC--CC
Q 015484 104 PKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHD-KEGYGLSWSPFK--EG 180 (406)
Q Consensus 104 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~--~~ 180 (406)
+.|-..-.+.-.+.++.+..+|.|+. +|.++.-| +++-|+... ..|..-+..-+ -.|-.+.|+|.. ..
T Consensus 13 ~tf~kslsl~v~~~~~a~si~p~grd-i~lAsr~g-l~i~dld~p-------~~ppr~l~h~tpw~vad~qws~h~a~~~ 83 (1081)
T KOG0309|consen 13 PTFGKSLSLKVDGGFNAVSINPSGRD-IVLASRQG-LYIIDLDDP-------FTPPRWLHHITPWQVADVQWSPHPAKPY 83 (1081)
T ss_pred CccCceeEEEecCcccceeeccccch-hhhhhhcC-eEEEeccCC-------CCCceeeeccCcchhcceecccCCCCce
Confidence 33444445566789999999999965 66666666 778888873 34444443222 346678898753 31
Q ss_pred eEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc-cccccccCC
Q 015484 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT-QQRVKAHEK 259 (406)
Q Consensus 181 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~ 259 (406)
.+++.+ ...-.+|++...... .+ -..+.+|..+|+++.|+|+.+.++++++.|-.+..||+++... +.....-..
T Consensus 84 wiVsts-~qkaiiwnlA~ss~~-aI--ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s 159 (1081)
T KOG0309|consen 84 WIVSTS-NQKAIIWNLAKSSSN-AI--EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRS 159 (1081)
T ss_pred eEEecC-cchhhhhhhhcCCcc-ce--EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccc
Confidence 344444 455568998765432 22 2345689999999999999999999999999999999998654 344444455
Q ss_pred CeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccc
Q 015484 260 EVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339 (406)
Q Consensus 260 ~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 339 (406)
....++|+-..++.+| .+....|.+||+|.+..|+..+++|...|+.+.|+..-...+.+++.||+|++||..+...+.
T Consensus 160 ~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~ 238 (1081)
T KOG0309|consen 160 AASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTES 238 (1081)
T ss_pred cCceeeecccCcchhh-hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccc
Confidence 6678999988874555 455668999999999999999999999999999988665678999999999999987643322
Q ss_pred ccccc-----------------------------------------cCCCCeeEEEecCCCCCeeeEEeCCCC-------
Q 015484 340 LELDA-----------------------------------------EDGPPELLFSHGGHKAKISDFSWNKND------- 371 (406)
Q Consensus 340 ~~~~~-----------------------------------------~~~~~~~~~~~~~h~~~v~~~~~s~~~------- 371 (406)
..... .......+..+.||...|..+.|-..+
T Consensus 239 ~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d 318 (1081)
T KOG0309|consen 239 KRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYD 318 (1081)
T ss_pred ceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCC
Confidence 11000 011245677888999999988885432
Q ss_pred --CcEEEEEeCCCcEEEEeCCCcccC
Q 015484 372 --PWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 372 --~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
.+.|++-+.|..+++|-+.+.+++
T Consensus 319 ~rdfQLVTWSkD~~lrlWpI~~~i~~ 344 (1081)
T KOG0309|consen 319 SRDFQLVTWSKDQTLRLWPIDSQIQR 344 (1081)
T ss_pred ccceeEEEeecCCceEeeeccHHHHH
Confidence 257999999999999999988764
No 223
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=3.9e-13 Score=125.87 Aligned_cols=220 Identities=13% Similarity=0.105 Sum_probs=138.7
Q ss_pred CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC---CCeEEEEeCCCccCCceeeeeeeeecc
Q 015484 138 CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH---DNKICLWDVSALAQDKVIDAMHVYEAH 214 (406)
Q Consensus 138 g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~ 214 (406)
..|.+||.... ....+..+...+.+.+|+|+++ .|+.++. ...|.+||+.++.. ..+...
T Consensus 184 ~~l~i~D~~g~---------~~~~lt~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~-------~~l~~~ 246 (433)
T PRK04922 184 YALQVADSDGY---------NPQTILRSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQR-------ELVASF 246 (433)
T ss_pred EEEEEECCCCC---------CceEeecCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCE-------EEeccC
Confidence 36888988642 1344566777899999999998 7777653 34699999977542 112223
Q ss_pred CccEEEEEeeCCCCCEEEEEecCC--cEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCc--EEEEeCCC
Q 015484 215 ESVVEDVSWHLKNENLFGSAGDDC--QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTT--VALFDMRK 290 (406)
Q Consensus 215 ~~~i~~i~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~--i~vwd~~~ 290 (406)
.+...+..|+|++..++++.+.+| .|++||+.+++. ..+..+.......+|+|+++.++++...+|. |+++|+..
T Consensus 247 ~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~ 325 (433)
T PRK04922 247 RGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG 325 (433)
T ss_pred CCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 344557899996555655666665 599999988764 3344444455678999999944444444554 66667665
Q ss_pred CCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC--cEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeC
Q 015484 291 MTVPLHILSSHTEEVFQVEWDPNHETVLASSADDR--RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWN 368 (406)
Q Consensus 291 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 368 (406)
+. ...+..+.......+|+|+|+.++++...++ .|.+||+..... . .+. +........|+
T Consensus 326 g~--~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~------------~---~Lt-~~~~~~~p~~s 387 (433)
T PRK04922 326 GS--AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV------------R---TLT-PGSLDESPSFA 387 (433)
T ss_pred CC--eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe------------E---ECC-CCCCCCCceEC
Confidence 43 3333333444557899999986444443333 589999865221 1 111 11234567999
Q ss_pred CCCCcEEEEEeCC--CcEEEEeCCCcc
Q 015484 369 KNDPWVISSVADD--NTVQVWQMTDSI 393 (406)
Q Consensus 369 ~~~~~~l~s~~~d--g~i~iw~~~~~~ 393 (406)
|+|++++++.... +.|.++++..+.
T Consensus 388 pdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 388 PNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred CCCCEEEEEEecCCceEEEEEECCCCc
Confidence 9999655554433 357777776554
No 224
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=1e-12 Score=109.49 Aligned_cols=235 Identities=14% Similarity=0.224 Sum_probs=154.7
Q ss_pred eEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCC--CeeEEEecCCCCCeEE-EecCC------C
Q 015484 119 NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDK--EGYGLSWSPFKEGYLV-SGSHD------N 189 (406)
Q Consensus 119 ~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~l~-s~~~d------g 189 (406)
.+++|+.+. ..+++|..+| .+||+++.-.+. .....+.+ .+..+-|- .+ +|+ .|+.+ .
T Consensus 9 lsvs~NQD~-ScFava~~~G-friyn~~P~ke~--------~~r~~~~~G~~~veMLfR--~N-~laLVGGg~~pky~pN 75 (346)
T KOG2111|consen 9 LSVSFNQDH-SCFAVATDTG-FRIYNCDPFKES--------ASRQFIDGGFKIVEMLFR--SN-YLALVGGGSRPKYPPN 75 (346)
T ss_pred eEEEEccCC-ceEEEEecCc-eEEEecCchhhh--------hhhccccCchhhhhHhhh--hc-eEEEecCCCCCCCCCc
Confidence 348999887 5788888888 999999873321 11111221 22222222 12 333 33332 4
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECC-CCcccccccc--cCCCeeEEEe
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR-TNQTQQRVKA--HEKEVNYLSF 266 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~--~~~~v~~i~~ 266 (406)
.|.|||=.... ++..+ ....+|.+|.+.+ ..+++.- .+.|.+|... ..+.+..+.. ....+.+++-
T Consensus 76 kviIWDD~k~~------~i~el-~f~~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~ 144 (346)
T KOG2111|consen 76 KVIIWDDLKER------CIIEL-SFNSEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCP 144 (346)
T ss_pred eEEEEecccCc------EEEEE-EeccceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecC
Confidence 69999933222 22222 2467899999974 3443443 5689999887 4455554421 2233444444
Q ss_pred cCCCCcEEEE-EeCCCcEEEEeCCCCCC-CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCc-EEEEeCCCCCccccccc
Q 015484 267 NPYNEWVLAT-ASSDTTVALFDMRKMTV-PLHILSSHTEEVFQVEWDPNHETVLASSADDRR-LMVWDLNRIGDEQLELD 343 (406)
Q Consensus 267 ~~~~~~~l~~-~~~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~ 343 (406)
+.... +||. |-.-|.|.|-|+..... +...+.+|.+.|.+++.+-+|. ++||+|..|+ |+|||..++.
T Consensus 145 ~~~k~-~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~------- 215 (346)
T KOG2111|consen 145 TSNKS-LLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGT------- 215 (346)
T ss_pred CCCce-EEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCc-------
Confidence 43333 4444 44568999999987554 4578899999999999999996 8999999987 7999998733
Q ss_pred ccCCCCeeEEEe--cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 344 AEDGPPELLFSH--GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 344 ~~~~~~~~~~~~--~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
++..+ ......|.+++|||+.. .||++++-|+|+|+.+.....
T Consensus 216 -------~l~E~RRG~d~A~iy~iaFSp~~s-~LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 216 -------LLQELRRGVDRADIYCIAFSPNSS-WLAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred -------EeeeeecCCchheEEEEEeCCCcc-EEEEEcCCCeEEEEEeecCCC
Confidence 23322 22345699999999999 588889999999999987654
No 225
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=3.5e-13 Score=125.77 Aligned_cols=219 Identities=13% Similarity=0.101 Sum_probs=132.5
Q ss_pred CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC---CeEEEEeCCCccCCceeeeeeeeecc
Q 015484 138 CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD---NKICLWDVSALAQDKVIDAMHVYEAH 214 (406)
Q Consensus 138 g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~ 214 (406)
..|.++|.... ....+..+...+.+.+|+|+|+ .|+..+.+ ..|.+||+.++... .+...
T Consensus 176 ~~L~~~D~dG~---------~~~~l~~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~-------~l~~~ 238 (427)
T PRK02889 176 YQLQISDADGQ---------NAQSALSSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRR-------VVANF 238 (427)
T ss_pred cEEEEECCCCC---------CceEeccCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEE-------EeecC
Confidence 35777776441 1334556778899999999998 77666532 45999999876421 12223
Q ss_pred CccEEEEEeeCCCCCEEEEEecCCcEEEEE--CCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC
Q 015484 215 ESVVEDVSWHLKNENLFGSAGDDCQLMIWD--LRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT 292 (406)
Q Consensus 215 ~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d--~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 292 (406)
.+.+....|+|++..++++.+.+|...+|. +..+. ...+..+........|+|+|+.+++++..+|...+|.+....
T Consensus 239 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~ 317 (427)
T PRK02889 239 KGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG 317 (427)
T ss_pred CCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC
Confidence 345567899996555555677788766665 44443 444444455566789999999444454445666666554222
Q ss_pred CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC---cEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCC
Q 015484 293 VPLHILSSHTEEVFQVEWDPNHETVLASSADDR---RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNK 369 (406)
Q Consensus 293 ~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 369 (406)
.....+..+........|+|+|+. |+..+.++ .|.+||+..... ..+ .. ........|+|
T Consensus 318 g~~~~lt~~g~~~~~~~~SpDG~~-Ia~~s~~~g~~~I~v~d~~~g~~------------~~l---t~-~~~~~~p~~sp 380 (427)
T PRK02889 318 GAAQRVTFTGSYNTSPRISPDGKL-LAYISRVGGAFKLYVQDLATGQV------------TAL---TD-TTRDESPSFAP 380 (427)
T ss_pred CceEEEecCCCCcCceEECCCCCE-EEEEEccCCcEEEEEEECCCCCe------------EEc---cC-CCCccCceECC
Confidence 112333333334456789999986 55544443 699999876221 111 11 12346789999
Q ss_pred CCCcEEEEEeCCCc--EEEEeCCC
Q 015484 370 NDPWVISSVADDNT--VQVWQMTD 391 (406)
Q Consensus 370 ~~~~~l~s~~~dg~--i~iw~~~~ 391 (406)
+|+.++++....|. +.+.++..
T Consensus 381 dg~~l~~~~~~~g~~~l~~~~~~g 404 (427)
T PRK02889 381 NGRYILYATQQGGRSVLAAVSSDG 404 (427)
T ss_pred CCCEEEEEEecCCCEEEEEEECCC
Confidence 99976666655554 44445533
No 226
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.60 E-value=7.2e-14 Score=117.46 Aligned_cols=273 Identities=18% Similarity=0.270 Sum_probs=176.7
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCC------------CCeeEEEecCCCC-Ce
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHD------------KEGYGLSWSPFKE-GY 181 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~l~~~~~~~-~~ 181 (406)
..-|.++.|...| .+||||..+|.|.+|.-...... .......++.|. ..|..+.|.+++. ..
T Consensus 25 adiis~vef~~~G-e~LatGdkgGRVv~f~r~~~~~~---ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~ 100 (433)
T KOG1354|consen 25 ADIISAVEFDHYG-ERLATGDKGGRVVLFEREKLYKG---EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAE 100 (433)
T ss_pred hcceeeEEeeccc-ceEeecCCCCeEEEeeccccccc---ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccE
Confidence 4568899999988 68999999999999987664321 122233444443 4688899998754 25
Q ss_pred EEEecCCCeEEEEeCCCccCCc---------------ee--------------eeeeee-eccCccEEEEEeeCCCCCEE
Q 015484 182 LVSGSHDNKICLWDVSALAQDK---------------VI--------------DAMHVY-EAHESVVEDVSWHLKNENLF 231 (406)
Q Consensus 182 l~s~~~dg~i~iwd~~~~~~~~---------------~~--------------~~~~~~-~~~~~~i~~i~~~p~~~~~l 231 (406)
++....|.+|++|.+......+ .+ .|.+.+ ..|..-|++|.++. +...+
T Consensus 101 FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~ 179 (433)
T KOG1354|consen 101 FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETF 179 (433)
T ss_pred EEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceE
Confidence 6666789999999987533211 00 111222 35778899999997 45555
Q ss_pred EEEecCCcEEEEECCCCcccccc---c-----ccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCC---------
Q 015484 232 GSAGDDCQLMIWDLRTNQTQQRV---K-----AHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVP--------- 294 (406)
Q Consensus 232 ~~~~~dg~i~i~d~~~~~~~~~~---~-----~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--------- 294 (406)
+ ..+|=.|.+|.+.-...-..+ + ....-|++..|+|..-++++-.+..|+|++.|+|.....
T Consensus 180 l-SADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe 258 (433)
T KOG1354|consen 180 L-SADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE 258 (433)
T ss_pred e-eccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc
Confidence 4 456778999998754432222 2 223568899999988888999999999999999953211
Q ss_pred ------cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCe---eeE
Q 015484 295 ------LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKI---SDF 365 (406)
Q Consensus 295 ------~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---~~~ 365 (406)
...+..--..|..+.|++.|++ +++-. --+|++||+.....+.........-...+..+. -...| ..+
T Consensus 259 pedp~~rsffseiIsSISDvKFs~sGry-ilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lY-EnD~IfdKFec 335 (433)
T KOG1354|consen 259 PEDPSSRSFFSEIISSISDVKFSHSGRY-ILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLY-ENDAIFDKFEC 335 (433)
T ss_pred ccCCcchhhHHHHhhhhhceEEccCCcE-EEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHh-hccchhheeEE
Confidence 1111122246889999999984 65543 468999999764432211111000000000000 01223 458
Q ss_pred EeCCCCCcEEEEEeCCCcEEEEeCCCcccCCC
Q 015484 366 SWNKNDPWVISSVADDNTVQVWQMTDSIYRDD 397 (406)
Q Consensus 366 ~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 397 (406)
+|+.++. .++||+..+.++++++..+..++.
T Consensus 336 ~~sg~~~-~v~TGsy~n~frvf~~~~gsk~d~ 366 (433)
T KOG1354|consen 336 SWSGNDS-YVMTGSYNNVFRVFNLARGSKEDF 366 (433)
T ss_pred EEcCCcc-eEecccccceEEEecCCCCcceee
Confidence 9999998 689999999999999887765443
No 227
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.60 E-value=5.7e-15 Score=137.09 Aligned_cols=244 Identities=16% Similarity=0.272 Sum_probs=176.7
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
..-+|.+.|+.++.+..+ .++|+++.|..|++|.+.. ..|+..+.+|++.|++|+|+|-. +.+.||
T Consensus 227 s~rGhs~ditdlavs~~n-~~iaaaS~D~vIrvWrl~~--------~~pvsvLrghtgavtaiafsP~~-----sss~dg 292 (1113)
T KOG0644|consen 227 SCRGHSGDITDLAVSSNN-TMIAAASNDKVIRVWRLPD--------GAPVSVLRGHTGAVTAIAFSPRA-----SSSDDG 292 (1113)
T ss_pred cCCCCccccchhccchhh-hhhhhcccCceEEEEecCC--------CchHHHHhccccceeeeccCccc-----cCCCCC
Confidence 345899999999999877 6899999999999999998 56788899999999999999843 677899
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~ 269 (406)
++++||.+-......-.+. .+ .....+-++.|.. ...-+++++.|+.-..|.+.... .+...+.-+..+.+
T Consensus 293 t~~~wd~r~~~~~y~prp~-~~-~~~~~~~s~~~~~-~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd 363 (1113)
T KOG0644|consen 293 TCRIWDARLEPRIYVPRPL-KF-TEKDLVDSILFEN-NGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSD 363 (1113)
T ss_pred ceEeccccccccccCCCCC-Cc-ccccceeeeeccc-cccccccccCCcccccchhhHhh------hhccceEEEecccc
Confidence 9999998721111111111 11 1234556666664 56778899999988888764321 12222222222222
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCC
Q 015484 270 NEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (406)
-..+.+++-.+-.+++|++-.+.. .+.+.+|...+..+.++|.+..+..+++.||...|||+-.+. +
T Consensus 364 ~~~~~~~ar~~~~~~vwnl~~g~l-~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~------------p 430 (1113)
T KOG0644|consen 364 LSSIVVTARNDHRLCVWNLYTGQL-LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI------------P 430 (1113)
T ss_pred ccccceeeeeeeEeeeeecccchh-hhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCC------------c
Confidence 223667777788899999998765 788889999999999999998888899999999999997632 2
Q ss_pred eeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 350 ELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 350 ~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
...+. .+| ..+.+-.||++|. -++....-|.++|.....+
T Consensus 431 ik~y~-~gh-~kl~d~kFSqdgt-s~~lsd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 431 IKHYF-IGH-GKLVDGKFSQDGT-SIALSDDHGQLYILGTGQS 470 (1113)
T ss_pred ceeee-ccc-ceeeccccCCCCc-eEecCCCCCceEEeccCCC
Confidence 22222 344 4577889999998 4666666788888766544
No 228
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.59 E-value=1.8e-13 Score=132.32 Aligned_cols=221 Identities=19% Similarity=0.223 Sum_probs=156.5
Q ss_pred CCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCC-ceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe
Q 015484 157 DPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG 235 (406)
Q Consensus 157 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~ 235 (406)
..+..+..|...+..++.++....+++|||.||+|++|+....... ...+...++......+.++.+.+ ++..+|.++
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~-~~~~~Av~t 1117 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG-NGDQFAVST 1117 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc-CCCeEEEEc
Confidence 3456677888899999998877459999999999999999875433 34445555555677888888887 788899999
Q ss_pred cCCcEEEEECCCCccc-------ccccc-cCCCee-EEEecCCCCc-EEEEEeCCCcEEEEeCCCCCCCcEE--ecCCCC
Q 015484 236 DDCQLMIWDLRTNQTQ-------QRVKA-HEKEVN-YLSFNPYNEW-VLATASSDTTVALFDMRKMTVPLHI--LSSHTE 303 (406)
Q Consensus 236 ~dg~i~i~d~~~~~~~-------~~~~~-~~~~v~-~i~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~--~~~h~~ 303 (406)
.||.|++.++...+.. ..... ..+.+. .-++...... .++.+..-+.|..||.|+... ... .....+
T Consensus 1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~-~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD-AWRLKNQLRHG 1196 (1431)
T ss_pred CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh-HHhhhcCcccc
Confidence 9999999999863211 11111 122333 3344333332 788888889999999998653 222 334457
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEE-ecCCCCCeeeEEeCCCCC---cEEEEEe
Q 015484 304 EVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFS-HGGHKAKISDFSWNKNDP---WVISSVA 379 (406)
Q Consensus 304 ~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~s~~~~---~~l~s~~ 379 (406)
.|++++.+|.+. ++++|+..|.+.+||++-. .++.. ..++..+|..+..+|..+ +.++++.
T Consensus 1197 ~vTSi~idp~~~-WlviGts~G~l~lWDLRF~--------------~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCN-WLVIGTSRGQLVLWDLRFR--------------VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred ceeEEEecCCce-EEEEecCCceEEEEEeecC--------------ceeecccCcccCCcceEEeeccCCCCceEEEecc
Confidence 899999999997 6999999999999999872 22222 234457788888777543 4444444
Q ss_pred -CCCcEEEEeCCCccc
Q 015484 380 -DDNTVQVWQMTDSIY 394 (406)
Q Consensus 380 -~dg~i~iw~~~~~~~ 394 (406)
..+-|.+|++.+|..
T Consensus 1262 ~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1262 SSNNEVSTWNMETGLR 1277 (1431)
T ss_pred cCCCceeeeecccCcc
Confidence 567899999998843
No 229
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.59 E-value=3.5e-13 Score=111.06 Aligned_cols=239 Identities=12% Similarity=0.090 Sum_probs=165.1
Q ss_pred CCCeEEEEeCCCccccccCCCCCceeee-CCCCCeeEEEecC---CCCCeEEEecCCCeEEEEeCCCccCCceeeeeeee
Q 015484 136 SSCEVYVFDCAKQAEKQQDDCDPDLRLK-GHDKEGYGLSWSP---FKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVY 211 (406)
Q Consensus 136 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 211 (406)
..|.+.+|++...... +...++ .-+..+..+.|+. ++.-.++-+...|.|.++........-.++++...
T Consensus 44 R~Gkl~Lys~~d~~~~------~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ 117 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLS------PLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSK 117 (339)
T ss_pred eccceEEEeecccccC------ccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchh
Confidence 3578999999885432 222222 2345677888864 22225667778899999987654433333333222
Q ss_pred eccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc--cccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCC
Q 015484 212 EAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT--QQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMR 289 (406)
Q Consensus 212 ~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~ 289 (406)
.-......++.|++ .+..++++-.+|.+.+-+...... ++..+.|.-......|+...++++.+|+.|+.+..||+|
T Consensus 118 ki~~~~~lslD~~~-~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R 196 (339)
T KOG0280|consen 118 KISVVEALSLDIST-SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIR 196 (339)
T ss_pred hhhheeeeEEEeec-cCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEec
Confidence 21222345778887 566677888899998666555443 447789999999999998888899999999999999999
Q ss_pred CCCCCcEE-ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeC
Q 015484 290 KMTVPLHI-LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWN 368 (406)
Q Consensus 290 ~~~~~~~~-~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 368 (406)
.++..+.. .+.|...|.+|.-+|..++.++||+.|-.|++||.++.+++..... -.+.|+.+.++
T Consensus 197 ~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~--------------v~GGVWRi~~~ 262 (339)
T KOG0280|consen 197 IPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK--------------VGGGVWRIKHH 262 (339)
T ss_pred CCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc--------------cccceEEEEec
Confidence 55443333 5678899999999998888999999999999999998765443211 12679999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 369 KNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 369 ~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
|.....+..+..-+-.+|-+++.+..+
T Consensus 263 p~~~~~lL~~CMh~G~ki~~~~~~~~e 289 (339)
T KOG0280|consen 263 PEIFHRLLAACMHNGAKILDSSDKVLE 289 (339)
T ss_pred chhhhHHHHHHHhcCceEEEecccccc
Confidence 864422333333444677777766554
No 230
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.58 E-value=1.1e-14 Score=126.87 Aligned_cols=250 Identities=14% Similarity=0.177 Sum_probs=182.8
Q ss_pred EEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec
Q 015484 107 EIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS 186 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 186 (406)
++...+.-...|..+.|.... .++|++ ....++|||-.. ..++.++.| ..|..+.|.|..- +|++++
T Consensus 162 ~L~~Ei~v~Etv~Dv~~LHne-q~~AVA-QK~y~yvYD~~G---------tElHClk~~-~~v~rLeFLPyHf-LL~~~~ 228 (545)
T KOG1272|consen 162 KLHFEINVMETVRDVTFLHNE-QFFAVA-QKKYVYVYDNNG---------TELHCLKRH-IRVARLEFLPYHF-LLVAAS 228 (545)
T ss_pred eeeeeeehhhhhhhhhhhcch-HHHHhh-hhceEEEecCCC---------cEEeehhhc-Cchhhhcccchhh-eeeecc
Confidence 344555566789999998876 567765 566799999765 224445544 4688999999877 899999
Q ss_pred CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEe
Q 015484 187 HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSF 266 (406)
Q Consensus 187 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~ 266 (406)
..|.++.-|+..++.... +....+.+..++-+| -+.++-+|...|+|.+|.....+++..+..|.++|.+|++
T Consensus 229 ~~G~L~Y~DVS~GklVa~------~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv 301 (545)
T KOG1272|consen 229 EAGFLKYQDVSTGKLVAS------IRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAV 301 (545)
T ss_pred cCCceEEEeechhhhhHH------HHccCCccchhhcCC-ccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEE
Confidence 999999999999865432 334456788888888 6788889999999999999999999999999999999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC
Q 015484 267 NPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED 346 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 346 (406)
.+.|. +++|.+.|..++|||+|+...+ .+... ..+...+++|..| +++++....|.||.=...+..
T Consensus 302 ~~~G~-YMaTtG~Dr~~kIWDlR~~~ql-~t~~t-p~~a~~ls~Sqkg---lLA~~~G~~v~iw~d~~~~s~-------- 367 (545)
T KOG1272|consen 302 DRGGR-YMATTGLDRKVKIWDLRNFYQL-HTYRT-PHPASNLSLSQKG---LLALSYGDHVQIWKDALKGSG-------- 367 (545)
T ss_pred CCCCc-EEeecccccceeEeeecccccc-ceeec-CCCcccccccccc---ceeeecCCeeeeehhhhcCCC--------
Confidence 99999 9999999999999999997763 33333 4567788888776 445555668999953321110
Q ss_pred CCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 347 GPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 347 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
....+...+ ...++|.++.|+|-.. +|..|-..|.-.|.=+..|
T Consensus 368 ~~~~pYm~H-~~~~~V~~l~FcP~ED-vLGIGH~~G~tsilVPGsG 411 (545)
T KOG1272|consen 368 HGETPYMNH-RCGGPVEDLRFCPYED-VLGIGHAGGITSILVPGSG 411 (545)
T ss_pred CCCcchhhh-ccCcccccceeccHHH-eeeccccCCceeEeccCCC
Confidence 000111111 1234899999999776 6766666665555544443
No 231
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1.3e-12 Score=121.82 Aligned_cols=220 Identities=11% Similarity=0.095 Sum_probs=135.4
Q ss_pred eecCCceeEEEEcCCCCcEEEEEe---CCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEE-EecC
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKT---SSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLV-SGSH 187 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~-s~~~ 187 (406)
..+...+...+|+|+|.. ||..+ .+..|++|++..... ..+..+. ..+..++|+|+|+ .|+ +.+.
T Consensus 195 t~~~~~~~~p~wSPDG~~-la~~s~~~g~~~i~i~dl~~G~~------~~l~~~~---~~~~~~~~SPDG~-~La~~~~~ 263 (429)
T PRK03629 195 HRSPQPLMSPAWSPDGSK-LAYVTFESGRSALVIQTLANGAV------RQVASFP---RHNGAPAFSPDGS-KLAFALSK 263 (429)
T ss_pred ecCCCceeeeEEcCCCCE-EEEEEecCCCcEEEEEECCCCCe------EEccCCC---CCcCCeEECCCCC-EEEEEEcC
Confidence 345678999999999954 55433 245799999876321 1122222 3345689999998 555 4455
Q ss_pred CC--eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe-cCCc--EEEEECCCCcccccccccCCCee
Q 015484 188 DN--KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG-DDCQ--LMIWDLRTNQTQQRVKAHEKEVN 262 (406)
Q Consensus 188 dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg~--i~i~d~~~~~~~~~~~~~~~~v~ 262 (406)
+| .|.+||+.++.. ..+..+...+....|+|+ ++.|+.++ .++. |.++|+.+++. ..+........
T Consensus 264 ~g~~~I~~~d~~tg~~-------~~lt~~~~~~~~~~wSPD-G~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~ 334 (429)
T PRK03629 264 TGSLNLYVMDLASGQI-------RQVTDGRSNNTEPTWFPD-SQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQ 334 (429)
T ss_pred CCCcEEEEEECCCCCE-------EEccCCCCCcCceEECCC-CCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCcc
Confidence 55 588899877532 122233446778899995 55554444 4444 44556665543 33333344556
Q ss_pred EEEecCCCCcEEEEEeCCC--cEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCc---EEEEeCCCCCc
Q 015484 263 YLSFNPYNEWVLATASSDT--TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRR---LMVWDLNRIGD 337 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~---i~iwd~~~~~~ 337 (406)
...|+|+|+.+++++..++ .|.+||+.++. ...+.. ........|+|+|+. |+.++.++. +.++++..
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~--~~~Lt~-~~~~~~p~~SpDG~~-i~~~s~~~~~~~l~~~~~~G--- 407 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGG--VQVLTD-TFLDETPSIAPNGTM-VIYSSSQGMGSVLNLVSTDG--- 407 (429)
T ss_pred CEEECCCCCEEEEEEccCCCceEEEEECCCCC--eEEeCC-CCCCCCceECCCCCE-EEEEEcCCCceEEEEEECCC---
Confidence 7899999994444443333 58889988754 333332 123456789999985 666665654 56666643
Q ss_pred ccccccccCCCCeeEEEecCCCCCeeeEEeCCC
Q 015484 338 EQLELDAEDGPPELLFSHGGHKAKISDFSWNKN 370 (406)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 370 (406)
.....+.+|.+.+...+|+|-
T Consensus 408 ------------~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 408 ------------RFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred ------------CCeEECccCCCCcCCcccCCC
Confidence 233344567778899999984
No 232
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.2e-12 Score=122.58 Aligned_cols=221 Identities=13% Similarity=0.131 Sum_probs=135.3
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeC---CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTS---SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
...|...+...+|+|++. .|+..+. ...|++|++..... ..+..+.+...+.+|+|+|+.++++.+.
T Consensus 199 lt~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~---------~~l~~~~g~~~~~~~SpDG~~l~~~~s~ 268 (433)
T PRK04922 199 ILRSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQR---------ELVASFRGINGAPSFSPDGRRLALTLSR 268 (433)
T ss_pred eecCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCE---------EEeccCCCCccCceECCCCCEEEEEEeC
Confidence 345667899999999995 5665553 34699999976321 2233334445578999999844456566
Q ss_pred CC--eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe-cCCc--EEEEECCCCcccccccccCCCee
Q 015484 188 DN--KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG-DDCQ--LMIWDLRTNQTQQRVKAHEKEVN 262 (406)
Q Consensus 188 dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg~--i~i~d~~~~~~~~~~~~~~~~v~ 262 (406)
+| .|.+||+.++.. ..+..+.......+|+|+ ++.++.++ .+|. |.++|+.+++. ..+........
T Consensus 269 ~g~~~Iy~~d~~~g~~-------~~lt~~~~~~~~~~~spD-G~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~~~~ 339 (433)
T PRK04922 269 DGNPEIYVMDLGSRQL-------TRLTNHFGIDTEPTWAPD-GKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQGNYNA 339 (433)
T ss_pred CCCceEEEEECCCCCe-------EECccCCCCccceEECCC-CCEEEEEECCCCCceEEEEECCCCCe-EEeecCCCCcc
Confidence 65 589999877532 222334444567899995 55554444 4554 66677766553 22322333455
Q ss_pred EEEecCCCCcEEEEEeC-CC--cEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC--cEEEEeCCCCCc
Q 015484 263 YLSFNPYNEWVLATASS-DT--TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDR--RLMVWDLNRIGD 337 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg--~i~iwd~~~~~~ 337 (406)
.++|+|+|+ .++..+. ++ .|.+||+.++.. ..+. +........|+|+++.++++....+ .|.++++..
T Consensus 340 ~~~~SpDG~-~Ia~~~~~~~~~~I~v~d~~~g~~--~~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g--- 412 (433)
T PRK04922 340 RASVSPDGK-KIAMVHGSGGQYRIAVMDLSTGSV--RTLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG--- 412 (433)
T ss_pred CEEECCCCC-EEEEEECCCCceeEEEEECCCCCe--EECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC---
Confidence 789999999 5554443 33 699999976543 3333 2234556799999986555554433 466666643
Q ss_pred ccccccccCCCCeeEEEecCCCCCeeeEEeCC
Q 015484 338 EQLELDAEDGPPELLFSHGGHKAKISDFSWNK 369 (406)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 369 (406)
.....+..+.+.+...+|+|
T Consensus 413 ------------~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 413 ------------RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ------------CceEEcccCCCCCCCCccCC
Confidence 12222333445677788887
No 233
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.56 E-value=2.9e-13 Score=113.88 Aligned_cols=275 Identities=17% Similarity=0.308 Sum_probs=183.8
Q ss_pred CCCeEEEEEeecCCceeEEEEcCCC-CcEEEEEeCCCeEEEEeCCCccccccC---------------------------
Q 015484 103 IPKVEIAQKIRVDGEVNRARCMPQK-PNLVGTKTSSCEVYVFDCAKQAEKQQD--------------------------- 154 (406)
Q Consensus 103 ~~~~~~~~~~~h~~~v~~i~~~p~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~--------------------------- 154 (406)
.|.|...+.+.-...|+.|+|.+++ ...++..+.|.+|++|.+........+
T Consensus 72 epEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~v 151 (433)
T KOG1354|consen 72 EPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEV 151 (433)
T ss_pred CcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeecccccee
Confidence 3556667777778899999999864 345667788999999998765443310
Q ss_pred CCCCceee-eCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeecc-----CccEEEEEeeCCCC
Q 015484 155 DCDPDLRL-KGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAH-----ESVVEDVSWHLKNE 228 (406)
Q Consensus 155 ~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~i~~i~~~p~~~ 228 (406)
...|...+ .+|+-.|.+|.++.++. .++++ .|=.|.+|+++-....-.+ ...+.+ ..-|++..|+|...
T Consensus 152 ea~prRv~aNaHtyhiNSIS~NsD~E-t~lSA-DdLRINLWnlei~d~sFnI---VDIKP~nmEeLteVITsaEFhp~~c 226 (433)
T KOG1354|consen 152 EASPRRVYANAHTYHINSISVNSDKE-TFLSA-DDLRINLWNLEIIDQSFNI---VDIKPANMEELTEVITSAEFHPHHC 226 (433)
T ss_pred eeeeeeeccccceeEeeeeeecCccc-eEeec-cceeeeeccccccCCceeE---EEccccCHHHHHHHHhhhccCHhHc
Confidence 01111112 35777899999999888 77777 5789999999865432222 112222 34588899999999
Q ss_pred CEEEEEecCCcEEEEECCCCccc----ccc------------cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC
Q 015484 229 NLFGSAGDDCQLMIWDLRTNQTQ----QRV------------KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT 292 (406)
Q Consensus 229 ~~l~~~~~dg~i~i~d~~~~~~~----~~~------------~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 292 (406)
+.|+-.+..|+|++.|+|..... +.+ ..--..|..+.|++.|+ ++++-+. -+|++||+....
T Consensus 227 n~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGr-yilsRDy-ltvk~wD~nme~ 304 (433)
T KOG1354|consen 227 NVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGR-YILSRDY-LTVKLWDLNMEA 304 (433)
T ss_pred cEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCc-EEEEecc-ceeEEEeccccC
Confidence 99999999999999999954321 111 11224578899999999 6765443 589999998777
Q ss_pred CCcEEecCCCC---------------CeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCC--------C
Q 015484 293 VPLHILSSHTE---------------EVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGP--------P 349 (406)
Q Consensus 293 ~~~~~~~~h~~---------------~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~ 349 (406)
.|+.+...|.. .-..++|+.++. .++||+....+++|++..+............+ +
T Consensus 305 ~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~-~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~ 383 (433)
T KOG1354|consen 305 KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS-YVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKL 383 (433)
T ss_pred CcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc-eEecccccceEEEecCCCCcceeecccccccCCcccccccc
Confidence 78888777652 134688999887 59999999999999976544332222111111 1
Q ss_pred eeEEEecCC------------CCCeeeEEeCCCCCcEEEEEeCCCcEEEE
Q 015484 350 ELLFSHGGH------------KAKISDFSWNKNDPWVISSVADDNTVQVW 387 (406)
Q Consensus 350 ~~~~~~~~h------------~~~v~~~~~s~~~~~~l~s~~~dg~i~iw 387 (406)
..+.....+ ...+...+|+|... .+|.+.. +.+.|+
T Consensus 384 ~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en-~ia~aat-nnlyif 431 (433)
T KOG1354|consen 384 RLVSSSGKRKRDEISVDALDFRKKILHTAWHPKEN-SIAVAAT-NNLYIF 431 (433)
T ss_pred eeeecCCCccccccccchhhhhhHHHhhccCCccc-eeeeeec-CceEEe
Confidence 111111111 22466678999988 6766654 456665
No 234
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.55 E-value=5.3e-13 Score=109.95 Aligned_cols=152 Identities=18% Similarity=0.373 Sum_probs=101.3
Q ss_pred eEEEecCCCCCeEEEecC---------CCeEEEEeCCCccCCceeeeeeeee-ccCccEEEEEeeCCCCCEEEE-EecCC
Q 015484 170 YGLSWSPFKEGYLVSGSH---------DNKICLWDVSALAQDKVIDAMHVYE-AHESVVEDVSWHLKNENLFGS-AGDDC 238 (406)
Q Consensus 170 ~~l~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~p~~~~~l~~-~~~dg 238 (406)
..+.|++.|..+++.... -|...+|.++..... . ..+. ...++|.+++|+|.+..++++ |..++
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~--~---~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~ 83 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP--V---ESIELKKEGPIHDVAWSPNGNEFAVIYGSMPA 83 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc--c---ceeeccCCCceEEEEECcCCCEEEEEEccCCc
Confidence 367899988844444441 244666666443221 1 1121 234579999999954444333 34577
Q ss_pred cEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeC---CCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCC
Q 015484 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS---DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHE 315 (406)
Q Consensus 239 ~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~ 315 (406)
.|.+||++ ++.+..+ ....++.+.|+|+|+ +|++++. .|.|.+||.++.+. +.... ...++.++|+|+|+
T Consensus 84 ~v~lyd~~-~~~i~~~--~~~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~~~~~~-i~~~~--~~~~t~~~WsPdGr 156 (194)
T PF08662_consen 84 KVTLYDVK-GKKIFSF--GTQPRNTISWSPDGR-FLVLAGFGNLNGDLEFWDVRKKKK-ISTFE--HSDATDVEWSPDGR 156 (194)
T ss_pred ccEEEcCc-ccEeEee--cCCCceEEEECCCCC-EEEEEEccCCCcEEEEEECCCCEE-eeccc--cCcEEEEEEcCCCC
Confidence 99999997 5555555 356788999999999 6776654 46799999996543 44433 34579999999999
Q ss_pred CEEEEEeC------CCcEEEEeCCC
Q 015484 316 TVLASSAD------DRRLMVWDLNR 334 (406)
Q Consensus 316 ~~l~s~~~------dg~i~iwd~~~ 334 (406)
+ |+++.. |+.++||++..
T Consensus 157 ~-~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 157 Y-LATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred E-EEEEEeccceeccccEEEEEecC
Confidence 6 555543 88899999864
No 235
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.54 E-value=1.6e-12 Score=108.80 Aligned_cols=244 Identities=15% Similarity=0.264 Sum_probs=160.2
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEE
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLW 194 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 194 (406)
-..|.-|.|..+.-.+|.....++.|.+|++.... -...+.....++.+++|||+|+..|.+...+-.|.+|
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe--------w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVW 119 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE--------WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVW 119 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecce--------eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEE
Confidence 46778889998887778888889999999998742 2445666678899999999998788889999999999
Q ss_pred eCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec------------------------------------CC
Q 015484 195 DVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD------------------------------------DC 238 (406)
Q Consensus 195 d~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~------------------------------------dg 238 (406)
.+.+.+. ..+...+..+..++|+| ++++.+.++. +.
T Consensus 120 SL~t~~~-------~~~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~ 191 (447)
T KOG4497|consen 120 SLNTQKG-------YLLPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGN 191 (447)
T ss_pred Eecccee-------EEecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCc
Confidence 9988542 11222234557777887 5555444332 12
Q ss_pred cEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC-------------------------
Q 015484 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV------------------------- 293 (406)
Q Consensus 239 ~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~------------------------- 293 (406)
.+.+||.--.-.+..+ ...-.+..++|+|.++ +|++|+.|+.+++.+--+.+.
T Consensus 192 ~laVwd~~Leykv~aY-e~~lG~k~v~wsP~~q-flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~ 269 (447)
T KOG4497|consen 192 WLAVWDNVLEYKVYAY-ERGLGLKFVEWSPCNQ-FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSI 269 (447)
T ss_pred EEEEecchhhheeeee-eeccceeEEEeccccc-eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcch
Confidence 2334442211111111 1234678899999998 999999999888754221100
Q ss_pred --------------------------------C--cEEec------CCCCCeEEEEEcCCCCCEEEEEeC--CCcEEEEe
Q 015484 294 --------------------------------P--LHILS------SHTEEVFQVEWDPNHETVLASSAD--DRRLMVWD 331 (406)
Q Consensus 294 --------------------------------~--~~~~~------~h~~~v~~i~~~p~~~~~l~s~~~--dg~i~iwd 331 (406)
| +..++ .....+..++|+++.. +++|-.. -+.+-+||
T Consensus 270 ~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~-y~aTrnd~~PnalW~Wd 348 (447)
T KOG4497|consen 270 VQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDST-YAATRNDKYPNALWLWD 348 (447)
T ss_pred hhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCce-EEeeecCCCCceEEEEe
Confidence 0 11111 1223567799999985 5766543 25689999
Q ss_pred CCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 332 LNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
++..+ ++..-....+|....|+|..+. |+.+.....+++|.++...
T Consensus 349 lq~l~---------------l~avLiQk~piraf~WdP~~pr-L~vctg~srLY~W~psg~~ 394 (447)
T KOG4497|consen 349 LQNLK---------------LHAVLIQKHPIRAFEWDPGRPR-LVVCTGKSRLYFWAPSGPR 394 (447)
T ss_pred chhhh---------------hhhhhhhccceeEEEeCCCCce-EEEEcCCceEEEEcCCCce
Confidence 98722 2222224567999999999885 4444445679999887653
No 236
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=2.4e-12 Score=120.18 Aligned_cols=226 Identities=15% Similarity=0.151 Sum_probs=134.1
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeC-C--CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTS-S--CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~-d--g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
..+...+.+.+|+|++. .|+..+. + ..|++||+..+.. ..+....+.+.+.+|+|+|+.++++.+.+
T Consensus 192 ~~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~---------~~l~~~~g~~~~~~~SPDG~~la~~~~~~ 261 (427)
T PRK02889 192 LSSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRR---------RVVANFKGSNSAPAWSPDGRTLAVALSRD 261 (427)
T ss_pred ccCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCE---------EEeecCCCCccceEECCCCCEEEEEEccC
Confidence 45778899999999995 5555543 2 3699999987421 22333344566899999998344567788
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEEC--CCCcccccccccCCCeeEEEe
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDL--RTNQTQQRVKAHEKEVNYLSF 266 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~~~~~~v~~i~~ 266 (406)
|...+|.++.... .. ..+..+........|+|++..++++...+|...+|.+ .+++. ..+..........+|
T Consensus 262 g~~~Iy~~d~~~~--~~---~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~ 335 (427)
T PRK02889 262 GNSQIYTVNADGS--GL---RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRI 335 (427)
T ss_pred CCceEEEEECCCC--Cc---EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEE
Confidence 8877776543211 11 2223344455677899954444444444566666654 44332 222222233456789
Q ss_pred cCCCCcEEEEEeCCC---cEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccccc
Q 015484 267 NPYNEWVLATASSDT---TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELD 343 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 343 (406)
+|+|+ .|+..+.++ .|.+||+..+.. ..+... .......|+|+++.++++....|.-.++-+...+
T Consensus 336 SpDG~-~Ia~~s~~~g~~~I~v~d~~~g~~--~~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g------- 404 (427)
T PRK02889 336 SPDGK-LLAYISRVGGAFKLYVQDLATGQV--TALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG------- 404 (427)
T ss_pred CCCCC-EEEEEEccCCcEEEEEEECCCCCe--EEccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECCC-------
Confidence 99999 565555443 699999987542 333322 3446789999998766655555553344332211
Q ss_pred ccCCCCeeEEEecCCCCCeeeEEeCCC
Q 015484 344 AEDGPPELLFSHGGHKAKISDFSWNKN 370 (406)
Q Consensus 344 ~~~~~~~~~~~~~~h~~~v~~~~~s~~ 370 (406)
.....+..+.+.+...+|+|-
T Consensus 405 ------~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 405 ------RIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred ------CceEEeecCCCCCCCCccCCC
Confidence 122223345566778888874
No 237
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=1.5e-11 Score=115.37 Aligned_cols=201 Identities=14% Similarity=0.136 Sum_probs=129.4
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeC---CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTS---SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
...|.+.+...+|+|++. .|+..+. +..|++|++.... ...+..+.+.+.+.+|+|+|+.++++.+.
T Consensus 197 lt~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~---------~~~l~~~~g~~~~~~~SPDG~~la~~~~~ 266 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQ---------RELVGNFPGMTFAPRFSPDGRKVVMSLSQ 266 (435)
T ss_pred EecCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCc---------EEEeecCCCcccCcEECCCCCEEEEEEec
Confidence 446788999999999995 4555442 4689999997632 23344556677889999999844456666
Q ss_pred CCe--EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe-cCC--cEEEEECCCCcccccccccCCCee
Q 015484 188 DNK--ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG-DDC--QLMIWDLRTNQTQQRVKAHEKEVN 262 (406)
Q Consensus 188 dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~v~ 262 (406)
+|. |.+||+.++.. ..+..+........|+|+ ++.++..+ .+| .|+++|+..++. ..+......+.
T Consensus 267 ~g~~~Iy~~d~~~~~~-------~~Lt~~~~~~~~~~~spD-G~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~ 337 (435)
T PRK05137 267 GGNTDIYTMDLRSGTT-------TRLTDSPAIDTSPSYSPD-GSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYS 337 (435)
T ss_pred CCCceEEEEECCCCce-------EEccCCCCccCceeEcCC-CCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCccc
Confidence 665 66678776532 223334455677899995 55554444 333 588888776543 33433345567
Q ss_pred EEEecCCCCcEEEEEeCC---CcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC-----cEEEEeCCC
Q 015484 263 YLSFNPYNEWVLATASSD---TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDR-----RLMVWDLNR 334 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg-----~i~iwd~~~ 334 (406)
...|+|+|+ .|+..+.+ ..|.+||+.... ...+.. ...+....|+|+|+.+++++...+ .+.++|+..
T Consensus 338 ~~~~SpdG~-~ia~~~~~~~~~~i~~~d~~~~~--~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 338 TPVWSPRGD-LIAFTKQGGGQFSIGVMKPDGSG--ERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred CeEECCCCC-EEEEEEcCCCceEEEEEECCCCc--eEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 789999999 55554432 268888875533 233322 335678899999986555544332 467777654
No 238
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.52 E-value=6.1e-11 Score=99.12 Aligned_cols=168 Identities=17% Similarity=0.276 Sum_probs=121.9
Q ss_pred EEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC--CCCCeeEEEecCCCCCeEEE
Q 015484 107 EIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG--HDKEGYGLSWSPFKEGYLVS 184 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s 184 (406)
..+..+....+|.++.+.++. |++.. .+.|+||...+.. +.++.+.. ......+++-..... +||.
T Consensus 86 ~~i~el~f~~~I~~V~l~r~r---iVvvl-~~~I~VytF~~n~-------k~l~~~et~~NPkGlC~~~~~~~k~-~Laf 153 (346)
T KOG2111|consen 86 RCIIELSFNSEIKAVKLRRDR---IVVVL-ENKIYVYTFPDNP-------KLLHVIETRSNPKGLCSLCPTSNKS-LLAF 153 (346)
T ss_pred cEEEEEEeccceeeEEEcCCe---EEEEe-cCeEEEEEcCCCh-------hheeeeecccCCCceEeecCCCCce-EEEc
Confidence 346677788999999999854 55444 5679999998632 22232222 122233333222222 4443
Q ss_pred -ecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCc-EEEEECCCCcccccccc--cCCC
Q 015484 185 -GSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQ-LMIWDLRTNQTQQRVKA--HEKE 260 (406)
Q Consensus 185 -~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~--~~~~ 260 (406)
|-.-|.|.|-|+...... +......|.+.|.|++.+- .+.++|+++..|+ |||||..+++.++.+.. ....
T Consensus 154 Pg~k~GqvQi~dL~~~~~~----~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~ 228 (346)
T KOG2111|consen 154 PGFKTGQVQIVDLASTKPN----APSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRAD 228 (346)
T ss_pred CCCccceEEEEEhhhcCcC----CceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchhe
Confidence 445699999999875432 2355678999999999996 7899999999987 78999999999888843 3467
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC
Q 015484 261 VNYLSFNPYNEWVLATASSDTTVALFDMRKMT 292 (406)
Q Consensus 261 v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 292 (406)
|.+|+|+|+.. +||+++..|+++||.++...
T Consensus 229 iy~iaFSp~~s-~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 229 IYCIAFSPNSS-WLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EEEEEeCCCcc-EEEEEcCCCeEEEEEeecCC
Confidence 99999999999 99999999999999988643
No 239
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.50 E-value=6.8e-12 Score=113.03 Aligned_cols=198 Identities=20% Similarity=0.270 Sum_probs=154.3
Q ss_pred CCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEec------C-------------CCCCeEEEe
Q 015484 125 PQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWS------P-------------FKEGYLVSG 185 (406)
Q Consensus 125 p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~------~-------------~~~~~l~s~ 185 (406)
|....++|....||.++||+........+ ..|...+ ++..++..|. | .+...++-|
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e--~~p~~~~---s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlg 76 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQE--FAPIASL---SGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLG 76 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeee--eccchhc---cCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEee
Confidence 33446899999999999999988654321 2233222 2344455552 1 122267888
Q ss_pred cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEE
Q 015484 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLS 265 (406)
Q Consensus 186 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~ 265 (406)
...|.|.+|++..++.... ..-..|.+.|+++.++. .-..|.+++.|+.+..|+................+.+++
T Consensus 77 t~~g~v~~ys~~~g~it~~----~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~ 151 (541)
T KOG4547|consen 77 TPQGSVLLYSVAGGEITAK----LSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLC 151 (541)
T ss_pred cCCccEEEEEecCCeEEEE----EecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceEE
Confidence 8899999999988754322 22246889999999985 678888999999999999999998888888889999999
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCC-----CCCEEEEEeCCCcEEEEeCCCCC
Q 015484 266 FNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPN-----HETVLASSADDRRLMVWDLNRIG 336 (406)
Q Consensus 266 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~-----~~~~l~s~~~dg~i~iwd~~~~~ 336 (406)
.+|++. .+++++ +.|++||+.+.+. +..|.+|.++|.+++|--. |.++|.+...+.-+.+|-+....
T Consensus 152 is~D~~-~l~~as--~~ik~~~~~~kev-v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~ 223 (541)
T KOG4547|consen 152 ISPDGK-ILLTAS--RQIKVLDIETKEV-VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKED 223 (541)
T ss_pred EcCCCC-EEEecc--ceEEEEEccCceE-EEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEccc
Confidence 999998 888887 6799999999665 8999999999999999877 77778788888889999887633
No 240
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.49 E-value=2.9e-11 Score=109.57 Aligned_cols=264 Identities=15% Similarity=0.181 Sum_probs=153.2
Q ss_pred eEEEEEeecCCce-eEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEE
Q 015484 106 VEIAQKIRVDGEV-NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVS 184 (406)
Q Consensus 106 ~~~~~~~~h~~~v-~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 184 (406)
.++...+...+.+ ..+.|+|+++ ++.+++.||.|.++|+.+. +.+..+.. .....+++++++|+ ++++
T Consensus 26 ~~~~~~i~~~~~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~~~~--------~~v~~i~~-G~~~~~i~~s~DG~-~~~v 94 (369)
T PF02239_consen 26 NKVVARIPTGGAPHAGLKFSPDGR-YLYVANRDGTVSVIDLATG--------KVVATIKV-GGNPRGIAVSPDGK-YVYV 94 (369)
T ss_dssp -SEEEEEE-STTEEEEEE-TT-SS-EEEEEETTSEEEEEETTSS--------SEEEEEE--SSEEEEEEE--TTT-EEEE
T ss_pred CeEEEEEcCCCCceeEEEecCCCC-EEEEEcCCCeEEEEECCcc--------cEEEEEec-CCCcceEEEcCCCC-EEEE
Confidence 4456667655554 4477899995 5666788999999999984 33555554 34467899999999 6665
Q ss_pred e-cCCCeEEEEeCCCccCCceeeeeeee-eccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccc-cccccCCCe
Q 015484 185 G-SHDNKICLWDVSALAQDKVIDAMHVY-EAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ-RVKAHEKEV 261 (406)
Q Consensus 185 ~-~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v 261 (406)
+ ...+.+.++|..+.+..+.+...... ......+..|..+|....++++.-+.+.|.+.|....+.+. .........
T Consensus 95 ~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~ 174 (369)
T PF02239_consen 95 ANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFP 174 (369)
T ss_dssp EEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTE
T ss_pred EecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccc
Confidence 5 56899999999886543332211100 01234677787787444455555666889888977654432 222234567
Q ss_pred eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCC-----------------------------------------------
Q 015484 262 NYLSFNPYNEWVLATASSDTTVALFDMRKMTVP----------------------------------------------- 294 (406)
Q Consensus 262 ~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~----------------------------------------------- 294 (406)
....|+|++++++++...+..|-++|..+.+..
T Consensus 175 ~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~ 254 (369)
T PF02239_consen 175 HDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVH 254 (369)
T ss_dssp EEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-S
T ss_pred cccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccc
Confidence 788999999966665556667888887664310
Q ss_pred -------cEEecCCCCCeEEEEEcCCCCCEEEE---EeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecC-CCCCee
Q 015484 295 -------LHILSSHTEEVFQVEWDPNHETVLAS---SADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG-HKAKIS 363 (406)
Q Consensus 295 -------~~~~~~h~~~v~~i~~~p~~~~~l~s---~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~ 363 (406)
+..+.....+ .-+.-+|+++++.+. +...+.|.++|..+. +.+..+.. ....+.
T Consensus 255 d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl--------------~~~~~i~~~~~~~~~ 319 (369)
T PF02239_consen 255 DDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL--------------KVVKTITPGPGKRVV 319 (369)
T ss_dssp TTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT--------------EEEE-HHHHHT--EE
T ss_pred hhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc--------------ceeEEEeccCCCcEe
Confidence 1111111222 456678999864444 355689999999872 33333321 123488
Q ss_pred eEEeCCCCCcEEEEEeCCC-cEEEEeCCCcccC
Q 015484 364 DFSWNKNDPWVISSVADDN-TVQVWQMTDSIYR 395 (406)
Q Consensus 364 ~~~~s~~~~~~l~s~~~dg-~i~iw~~~~~~~~ 395 (406)
.+.|+++|+++.+|.-..+ .|.|||..+....
T Consensus 320 h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~ 352 (369)
T PF02239_consen 320 HMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEK 352 (369)
T ss_dssp EEEE-TTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred ccEECCCCCEEEEEEecCCCEEEEEECCCcEEE
Confidence 9999999998777776666 8999999886543
No 241
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.49 E-value=3.2e-13 Score=124.20 Aligned_cols=266 Identities=18% Similarity=0.347 Sum_probs=188.8
Q ss_pred hhHhhhhhcCCCCCCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCC
Q 015484 25 PFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIP 104 (406)
Q Consensus 25 ~~ly~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 104 (406)
||---....|..+|....+||.|....+ ..++.|..- . -.|+.+..|.+ .
T Consensus 55 p~~ppr~l~h~tpw~vad~qws~h~a~~----------~wiVsts~q----k-aiiwnlA~ss~---------------~ 104 (1081)
T KOG0309|consen 55 PFTPPRWLHHITPWQVADVQWSPHPAKP----------YWIVSTSNQ----K-AIIWNLAKSSS---------------N 104 (1081)
T ss_pred CCCCceeeeccCcchhcceecccCCCCc----------eeEEecCcc----h-hhhhhhhcCCc---------------c
Confidence 3333445778899999999999865544 455555421 1 22455554411 1
Q ss_pred CeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEE
Q 015484 105 KVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVS 184 (406)
Q Consensus 105 ~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 184 (406)
.++ ....+|...|+.+.|+|+.+.++|+++.|..|..||+... ..|......-......|+|+-..+ .+.+
T Consensus 105 aIe-f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp-------~~p~ys~~~w~s~asqVkwnyk~p-~vla 175 (1081)
T KOG0309|consen 105 AIE-FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP-------HRPFYSTSSWRSAASQVKWNYKDP-NVLA 175 (1081)
T ss_pred ceE-EEEecCccceeccccCCCCCcceeeccccccceeeeccCC-------CcceeeeecccccCceeeecccCc-chhh
Confidence 122 3467899999999999999999999999999999999983 445555555556678899998777 5555
Q ss_pred ecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccc-ccccccCCCeeE
Q 015484 185 GSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ-QRVKAHEKEVNY 263 (406)
Q Consensus 185 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~v~~ 263 (406)
.+....|++||++.+.. ++..+++|...|+.+.|+..-...+.+++.||+|+.||-...... ........+|..
T Consensus 176 sshg~~i~vwd~r~gs~-----pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~ 250 (1081)
T KOG0309|consen 176 SSHGNDIFVWDLRKGST-----PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWR 250 (1081)
T ss_pred hccCCceEEEeccCCCc-----ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCccee
Confidence 66778899999998764 356677788999999998766677889999999999997654322 112234566777
Q ss_pred EEecCCCCcEEEEEeCC-CcEEE---------EeCCCCCCCcEEecCCCCCeEEEEEcCCC---------CCEEEEEeCC
Q 015484 264 LSFNPYNEWVLATASSD-TTVAL---------FDMRKMTVPLHILSSHTEEVFQVEWDPNH---------ETVLASSADD 324 (406)
Q Consensus 264 i~~~~~~~~~l~~~~~d-g~i~v---------wd~~~~~~~~~~~~~h~~~v~~i~~~p~~---------~~~l~s~~~d 324 (406)
-.+-|.|+.+++--... ..+.+ |+..+...|++.+.+|...|....|-..+ ..-|+|-+.|
T Consensus 251 ~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD 330 (1081)
T KOG0309|consen 251 GRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKD 330 (1081)
T ss_pred ccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecC
Confidence 77777776443332221 13333 44444567899999999999888775432 2459999999
Q ss_pred CcEEEEeCCC
Q 015484 325 RRLMVWDLNR 334 (406)
Q Consensus 325 g~i~iwd~~~ 334 (406)
..+++|-+..
T Consensus 331 ~~lrlWpI~~ 340 (1081)
T KOG0309|consen 331 QTLRLWPIDS 340 (1081)
T ss_pred CceEeeeccH
Confidence 9999999865
No 242
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=6.6e-13 Score=116.58 Aligned_cols=235 Identities=17% Similarity=0.259 Sum_probs=165.0
Q ss_pred CCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCcee------------------------------
Q 015484 156 CDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVI------------------------------ 205 (406)
Q Consensus 156 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------------------------------ 205 (406)
......|..|.+.|..|.|+..|. .|++|+.|..|.+||....+....+
T Consensus 132 ~~l~~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 132 LRLQKKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred hhhhhcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 344567889999999999999999 9999999999999997653211000
Q ss_pred ------------eeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc---cccCC---CeeEEEec
Q 015484 206 ------------DAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV---KAHEK---EVNYLSFN 267 (406)
Q Consensus 206 ------------~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~---~v~~i~~~ 267 (406)
.....+..|.++|..++.-|....-|.+++.|+.+.-+|+++......+ ..+.. ..++++.+
T Consensus 211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence 0012344688899999999999999999999999999999987664433 22333 57889999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCC-----cEEecCC------CCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCC
Q 015484 268 PYNEWVLATASSDTTVALFDMRKMTVP-----LHILSSH------TEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIG 336 (406)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vwd~~~~~~~-----~~~~~~h------~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 336 (406)
|...+.+++|+.|..+++||.|..... +..+..| .-.|++++|+.++.-+| ++-.|-.|+++.-....
T Consensus 291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElL-aSYnDe~IYLF~~~~~~ 369 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELL-ASYNDEDIYLFNKSMGD 369 (559)
T ss_pred CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcccee-eeecccceEEecccccc
Confidence 999889999999999999999864321 2333322 34699999997776544 55557788888443311
Q ss_pred cccccccccCCCCeeEEEecCCCC--CeeeEEe-CCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 337 DEQLELDAEDGPPELLFSHGGHKA--KISDFSW-NKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~-s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
. ................+.||.. .|..+-| -|... ++++|+.-|.|.||+-.++.+
T Consensus 370 G-~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE-yVvSGSDCGhIFiW~K~t~ei 428 (559)
T KOG1334|consen 370 G-SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE-YVVSGSDCGHIFIWDKKTGEI 428 (559)
T ss_pred C-CCCCCCcchhhccchhhcccccccccceeeeccCccc-eEEecCccceEEEEecchhHH
Confidence 1 0000000001112223677754 4777766 45666 699999999999999888743
No 243
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.47 E-value=4.9e-12 Score=113.94 Aligned_cols=193 Identities=14% Similarity=0.305 Sum_probs=154.7
Q ss_pred eEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEee------C-------------CCCCEEEEEecCCcEE
Q 015484 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWH------L-------------KNENLFGSAGDDCQLM 241 (406)
Q Consensus 181 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~------p-------------~~~~~l~~~~~dg~i~ 241 (406)
++|....||.+++|+...++....+.+.... .+...+..|. | .+...++-|...|.|.
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~---s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASL---SGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeeccchhc---cCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 8999999999999999887654444333222 2333444442 1 1345678888999999
Q ss_pred EEECCCCcccccc--cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEE
Q 015484 242 IWDLRTNQTQQRV--KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLA 319 (406)
Q Consensus 242 i~d~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~ 319 (406)
+|++..++....+ ..|.+.|+++.++.+-. .|.+++.|+.+..|+...... +.........+.+++.+|++. +++
T Consensus 84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~-~~~~~~~~~~~~sl~is~D~~-~l~ 160 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVI-IRIWKEQKPLVSSLCISPDGK-ILL 160 (541)
T ss_pred EEEecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEeccccee-eeeeccCCCccceEEEcCCCC-EEE
Confidence 9999999876666 56889999999998777 899999999999999987554 777888888999999999987 577
Q ss_pred EEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCC-----CCcEEEEEeCCCcEEEEeCCCccc
Q 015484 320 SSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKN-----DPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 320 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-----~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
+++ +.|++||+++ .+.+..+.||.++|.+++|--. |.++|.+...+..+.+|.+....-
T Consensus 161 ~as--~~ik~~~~~~--------------kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~k 224 (541)
T KOG4547|consen 161 TAS--RQIKVLDIET--------------KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDK 224 (541)
T ss_pred ecc--ceEEEEEccC--------------ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccc
Confidence 775 5799999997 6888999999999999999877 788888888888999998877443
Q ss_pred C
Q 015484 395 R 395 (406)
Q Consensus 395 ~ 395 (406)
+
T Consensus 225 k 225 (541)
T KOG4547|consen 225 K 225 (541)
T ss_pred c
Confidence 3
No 244
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.47 E-value=1.8e-12 Score=105.11 Aligned_cols=207 Identities=17% Similarity=0.236 Sum_probs=134.4
Q ss_pred eeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccc----cCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 118 VNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQ----QDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 118 v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~----~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
|+.+.+..+ ..|+++..++.+..+......... .....+...+..|+++-.+-+.+-.+. .++++..||.+.+
T Consensus 39 ~~~~~~v~~--~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t-~V~~~~~dg~~~v 115 (319)
T KOG4714|consen 39 LSKVSLSAE--YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDN-RVCIGYADGSLAV 115 (319)
T ss_pred EEEeechhh--heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCC-ceEecCCCceEEE
Confidence 555555543 356666666555554443321111 013445666666666655555555565 7999999999999
Q ss_pred EeCCCccCCceeeeeeeeec-cCccEEEEEeeCCCCCEEEEEe-----cCCcEEEEECCCCcccccccccCCCeeEEEec
Q 015484 194 WDVSALAQDKVIDAMHVYEA-HESVVEDVSWHLKNENLFGSAG-----DDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFN 267 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~ 267 (406)
++.+..... ...... |.+ -.+.+... .++++.++. .-+..+.|+++..+....-......|.+++-+
T Consensus 116 ~s~~~~~~~-----~~~i~~~~~~-~as~~~~~-~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~h 188 (319)
T KOG4714|consen 116 FSTDKDLAL-----MSRIPSIHSG-SASRKICR-HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSH 188 (319)
T ss_pred EechHHHhh-----hhhccccccc-ccccceee-cccEEecCCcceEeeccceeeecccccccccccccccccchhhhCC
Confidence 998762110 011111 111 11111111 233333322 23456677777654433222233449999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 268 PYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
|..++++++|+.||.+.+||.|+...|...+..|+.++..+.|+|..+.-|.++++||.+..||...
T Consensus 189 p~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 189 PAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 9988899999999999999999998889999999999999999998877799999999999999874
No 245
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.47 E-value=3.9e-11 Score=100.72 Aligned_cols=231 Identities=17% Similarity=0.266 Sum_probs=153.0
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC-----
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD----- 188 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d----- 188 (406)
-+.++..++|+|+|+.+|.+...+-.|.||.+.+.. ...++..+..+..++|+|+|+ +.+.++.-
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~---------~~~~~~pK~~~kg~~f~~dg~-f~ai~sRrDCkdy 159 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK---------GYLLPHPKTNVKGYAFHPDGQ-FCAILSRRDCKDY 159 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccce---------eEEecccccCceeEEECCCCc-eeeeeecccHHHH
Confidence 457899999999999999999999999999998832 223344455678889999888 66655432
Q ss_pred -------------------------------CeEEEEeCCCccCCceeeeeeeeecc-CccEEEEEeeCCCCCEEEEEec
Q 015484 189 -------------------------------NKICLWDVSALAQDKVIDAMHVYEAH-ESVVEDVSWHLKNENLFGSAGD 236 (406)
Q Consensus 189 -------------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~p~~~~~l~~~~~ 236 (406)
..+.+||--- . ...+.-+ .-.+..++|+| .+.+++.|+.
T Consensus 160 v~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~L-------e-ykv~aYe~~lG~k~v~wsP-~~qflavGsy 230 (447)
T KOG4497|consen 160 VQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL-------E-YKVYAYERGLGLKFVEWSP-CNQFLAVGSY 230 (447)
T ss_pred HHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchh-------h-heeeeeeeccceeEEEecc-ccceEEeecc
Confidence 1122332110 0 0111112 34688899999 7899999999
Q ss_pred CCcEEEEECCCCcc------------------------------------------------------------cccc--
Q 015484 237 DCQLMIWDLRTNQT------------------------------------------------------------QQRV-- 254 (406)
Q Consensus 237 dg~i~i~d~~~~~~------------------------------------------------------------~~~~-- 254 (406)
|+.+|+.+--+-+. +..+
T Consensus 231 D~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp 310 (447)
T KOG4497|consen 231 DQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKP 310 (447)
T ss_pred chhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccC
Confidence 99988754211000 0000
Q ss_pred ----cccCCCeeEEEecCCCCcEEEEEeCC--CcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEE
Q 015484 255 ----KAHEKEVNYLSFNPYNEWVLATASSD--TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLM 328 (406)
Q Consensus 255 ----~~~~~~v~~i~~~~~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~ 328 (406)
......+--++|+++.. ++++-... ..+-+||+++.+ +...-....+|....|+|..+. |+.+.....++
T Consensus 311 ~tD~pnPk~g~g~lafs~Ds~-y~aTrnd~~PnalW~Wdlq~l~--l~avLiQk~piraf~WdP~~pr-L~vctg~srLY 386 (447)
T KOG4497|consen 311 PTDFPNPKCGAGKLAFSCDST-YAATRNDKYPNALWLWDLQNLK--LHAVLIQKHPIRAFEWDPGRPR-LVVCTGKSRLY 386 (447)
T ss_pred CCCCCCcccccceeeecCCce-EEeeecCCCCceEEEEechhhh--hhhhhhhccceeEEEeCCCCce-EEEEcCCceEE
Confidence 01123355689999886 66655432 378999999755 4444456788999999999986 66666677799
Q ss_pred EEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCc
Q 015484 329 VWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNT 383 (406)
Q Consensus 329 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~ 383 (406)
+|.... +..+... +..-.|.++.|.-.|. .++-.+.|..
T Consensus 387 ~W~psg--------------~~~V~vP-~~GF~i~~l~W~~~g~-~i~l~~kDaf 425 (447)
T KOG4497|consen 387 FWAPSG--------------PRVVGVP-KKGFNIQKLQWLQPGE-FIVLCGKDAF 425 (447)
T ss_pred EEcCCC--------------ceEEecC-CCCceeeeEEecCCCc-EEEEEcCCce
Confidence 998764 2222222 2224599999999999 5777777764
No 246
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.46 E-value=4.6e-12 Score=121.00 Aligned_cols=205 Identities=15% Similarity=0.161 Sum_probs=153.5
Q ss_pred eeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC
Q 015484 169 GYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN 248 (406)
Q Consensus 169 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~ 248 (406)
|....+.-... .++.+..+..+.+||...+.....+.+-.. .--....-+.+++ ..-++++|+.-+.|.+|+....
T Consensus 90 i~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~~~er--~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~d 165 (967)
T KOG0974|consen 90 IFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQSDER--CTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHED 165 (967)
T ss_pred ccccchhhhcc-eEEEEEcCceEEEEecccCceehhcCCCce--EEEEeEEEEeccC-cEEEEEeccccccEEEEecccc
Confidence 33344444455 788888899999999877543221111000 0001111223444 5677889999999999998844
Q ss_pred cccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEE
Q 015484 249 QTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLM 328 (406)
Q Consensus 249 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~ 328 (406)
+....+.+|.+.+.++.|+-+|. ++++.+.|.++++|++.+.+.......+|+..|..++|.|. .++|++.|.+.+
T Consensus 166 n~p~~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcr 241 (967)
T KOG0974|consen 166 NKPIRLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTCR 241 (967)
T ss_pred CCcceecccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---eeEEeccceEEE
Confidence 43345789999999999999999 99999999999999999988766678899999999999998 499999999999
Q ss_pred EEeCCCCCcccccccccCCCCeeEEEecCCC-CCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCCC
Q 015484 329 VWDLNRIGDEQLELDAEDGPPELLFSHGGHK-AKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDD 397 (406)
Q Consensus 329 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 397 (406)
+|+... ..+..+.+|. ..|..++..+... +++|++.|+.+++|++.....+..
T Consensus 242 vW~~~~---------------~~l~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~r~~e~~ 295 (967)
T KOG0974|consen 242 VWGVNG---------------TQLEVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNGRGLEGH 295 (967)
T ss_pred EEeccc---------------ceehhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhhccccccc
Confidence 997654 2233555564 3588999998887 799999999999999988776543
No 247
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=1.2e-09 Score=93.54 Aligned_cols=294 Identities=11% Similarity=0.133 Sum_probs=186.5
Q ss_pred EEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCCceeEEEEcCCCCcEEEEEeC--CCe
Q 015484 62 HKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTS--SCE 139 (406)
Q Consensus 62 ~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~--dg~ 139 (406)
+.+++||.+-.. ..-|+++.+.-+ .+++...++..+.+.++-++|+|+++.+.+.... +|.
T Consensus 3 ~~~YiGtyT~~~-s~gI~v~~ld~~----------------~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~gg 65 (346)
T COG2706 3 QTVYIGTYTKRE-SQGIYVFNLDTK----------------TGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGG 65 (346)
T ss_pred eEEEEeeecccC-CCceEEEEEeCc----------------ccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCc
Confidence 478899998443 356777766632 1445566677888999999999998544433333 577
Q ss_pred EEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC-CCeEEEEeCCCccCCceeeeeeeeeccCcc-
Q 015484 140 VYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH-DNKICLWDVSALAQDKVIDAMHVYEAHESV- 217 (406)
Q Consensus 140 i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~- 217 (406)
|.-|.+....... ..+........+-+-++++++++ +|+++.. .|.|.++-++....... ......|.+.
T Consensus 66 vaay~iD~~~G~L----t~ln~~~~~g~~p~yvsvd~~g~-~vf~AnY~~g~v~v~p~~~dG~l~~---~v~~~~h~g~~ 137 (346)
T COG2706 66 VAAYRIDPDDGRL----TFLNRQTLPGSPPCYVSVDEDGR-FVFVANYHSGSVSVYPLQADGSLQP---VVQVVKHTGSG 137 (346)
T ss_pred EEEEEEcCCCCeE----EEeeccccCCCCCeEEEECCCCC-EEEEEEccCceEEEEEcccCCcccc---ceeeeecCCCC
Confidence 8888887631111 11111111223337899999998 7777755 58999999876422111 1111223333
Q ss_pred ---------EEEEEeeCCCCCEEEEEe-cCCcEEEEECCCCcccccc---cccCCCeeEEEecCCCCcEEEEEeCCCcEE
Q 015484 218 ---------VEDVSWHLKNENLFGSAG-DDCQLMIWDLRTNQTQQRV---KAHEKEVNYLSFNPYNEWVLATASSDTTVA 284 (406)
Q Consensus 218 ---------i~~i~~~p~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~---~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~ 284 (406)
+....+.| +++++++.. .--.|.+|++..++....- -.....-+.|.|+|+++...++.--+++|.
T Consensus 138 p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~ 216 (346)
T COG2706 138 PHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVD 216 (346)
T ss_pred CCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEE
Confidence 77888999 566665553 2336999999977653221 123455688999999996566666789999
Q ss_pred EEeCCCCCCCcEEecC---------CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEe
Q 015484 285 LFDMRKMTVPLHILSS---------HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH 355 (406)
Q Consensus 285 vwd~~~~~~~~~~~~~---------h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 355 (406)
+|........+..++. .......|..+|+|+.+.++--....|.+|.+...+.. ..++...
T Consensus 217 v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~----------L~~~~~~ 286 (346)
T COG2706 217 VLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGK----------LELVGIT 286 (346)
T ss_pred EEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCE----------EEEEEEe
Confidence 9998874222222221 23467889999999854444444568888888763321 2333344
Q ss_pred cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 356 GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 356 ~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
..+.....++.+++.+++++++.-.+..|.+|..+.
T Consensus 287 ~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 287 PTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred ccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 445555789999999996665555556789987654
No 248
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=1.1e-10 Score=109.32 Aligned_cols=218 Identities=14% Similarity=0.145 Sum_probs=130.7
Q ss_pred eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC-CC--eEEEEeCCCccCCceeeeeeeeeccC
Q 015484 139 EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH-DN--KICLWDVSALAQDKVIDAMHVYEAHE 215 (406)
Q Consensus 139 ~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~ 215 (406)
.|.++|..... ...+..+...+.+..|+|+|+ .|+..+. ++ .|.+||+.+++.. .+.. ..
T Consensus 199 ~l~i~d~dG~~---------~~~l~~~~~~~~~p~wSPDG~-~La~~s~~~g~~~L~~~dl~tg~~~----~lt~---~~ 261 (448)
T PRK04792 199 QLMIADYDGYN---------EQMLLRSPEPLMSPAWSPDGR-KLAYVSFENRKAEIFVQDIYTQVRE----KVTS---FP 261 (448)
T ss_pred EEEEEeCCCCC---------ceEeecCCCcccCceECCCCC-EEEEEEecCCCcEEEEEECCCCCeE----EecC---CC
Confidence 56666765521 234555677888999999998 6665543 33 5888888775321 1111 12
Q ss_pred ccEEEEEeeCCCCCEEEEEecCCc--EEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCC--cEEEEeCCCC
Q 015484 216 SVVEDVSWHLKNENLFGSAGDDCQ--LMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT--TVALFDMRKM 291 (406)
Q Consensus 216 ~~i~~i~~~p~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg--~i~vwd~~~~ 291 (406)
.......|+|++..++++.+.+|. |.++|+.+++. ..+..+.......+|+|+++.++++...++ .|.++|+.++
T Consensus 262 g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g 340 (448)
T PRK04792 262 GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG 340 (448)
T ss_pred CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 234467899965556556666775 77888887654 334334455677899999995555554444 4666677654
Q ss_pred CCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEE--EeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCC
Q 015484 292 TVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMV--WDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNK 369 (406)
Q Consensus 292 ~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 369 (406)
+ ...+..........+|+|+++.++++...++...| +|+.... ...+ ... .......|+|
T Consensus 341 ~--~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~------------~~~l---t~~-~~d~~ps~sp 402 (448)
T PRK04792 341 K--VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA------------MQVL---TST-RLDESPSVAP 402 (448)
T ss_pred C--EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC------------eEEc---cCC-CCCCCceECC
Confidence 4 23332223334557999999875555555554444 5655421 1111 111 1123458999
Q ss_pred CCCcEEEEEeCCCc--EEEEeCCCc
Q 015484 370 NDPWVISSVADDNT--VQVWQMTDS 392 (406)
Q Consensus 370 ~~~~~l~s~~~dg~--i~iw~~~~~ 392 (406)
+|+.++.+...++. +.+++.+.+
T Consensus 403 dG~~I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 403 NGTMVIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred CCCEEEEEEecCCceEEEEEECCCC
Confidence 99977776666655 666676544
No 249
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.45 E-value=9.8e-11 Score=106.20 Aligned_cols=244 Identities=14% Similarity=0.100 Sum_probs=149.1
Q ss_pred EEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeee
Q 015484 131 VGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHV 210 (406)
Q Consensus 131 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 210 (406)
+++-..+|.|.|.|..+. +.+..+......-..+.++|+++ ++++++.||.|.++|+.+.+.. ..
T Consensus 9 ~V~~~~~~~v~viD~~t~--------~~~~~i~~~~~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~~~~~~v------~~ 73 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATN--------KVVARIPTGGAPHAGLKFSPDGR-YLYVANRDGTVSVIDLATGKVV------AT 73 (369)
T ss_dssp EEEEGGGTEEEEEETTT---------SEEEEEE-STTEEEEEE-TT-SS-EEEEEETTSEEEEEETTSSSEE------EE
T ss_pred EEEecCCCEEEEEECCCC--------eEEEEEcCCCCceeEEEecCCCC-EEEEEcCCCeEEEEECCcccEE------EE
Confidence 455667899999999873 33566665444434578999998 8888889999999999987532 22
Q ss_pred eeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccc-------cCCCeeEEEecCCCCcEEEEEeCCCcE
Q 015484 211 YEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA-------HEKEVNYLSFNPYNEWVLATASSDTTV 283 (406)
Q Consensus 211 ~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~v~~i~~~~~~~~~l~~~~~dg~i 283 (406)
+.. .....++++++++..++++....+.+.++|.++.+.++.+.. ....+..+..+|..+.++++.-..+.|
T Consensus 74 i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I 152 (369)
T PF02239_consen 74 IKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEI 152 (369)
T ss_dssp EE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEE
T ss_pred Eec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeE
Confidence 332 445788999985444444556899999999999988877632 234677888888887444444455789
Q ss_pred EEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc-------------------
Q 015484 284 ALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA------------------- 344 (406)
Q Consensus 284 ~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------- 344 (406)
.+.|......+...............|+|++++++++......|-++|......... .+.
T Consensus 153 ~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~-i~~g~~p~~~~~~~~php~~g~ 231 (369)
T PF02239_consen 153 WVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVAL-IDTGKKPHPGPGANFPHPGFGP 231 (369)
T ss_dssp EEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEE-EE-SSSBEETTEEEEEETTTEE
T ss_pred EEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEE-eeccccccccccccccCCCcce
Confidence 999988765433333334567889999999998777777788898998776322110 000
Q ss_pred -----------------------cCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEE---EeCCCcEEEEeCCCc
Q 015484 345 -----------------------EDGPPELLFSHGGHKAKISDFSWNKNDPWVISS---VADDNTVQVWQMTDS 392 (406)
Q Consensus 345 -----------------------~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s---~~~dg~i~iw~~~~~ 392 (406)
.....+.+......... .-+..+|+++++.+. +...+.|.++|..+-
T Consensus 232 vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl 304 (369)
T PF02239_consen 232 VWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL 304 (369)
T ss_dssp EEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT
T ss_pred EEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc
Confidence 00111223333332333 567789999976655 456688999999876
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=4.8e-11 Score=111.85 Aligned_cols=224 Identities=15% Similarity=0.174 Sum_probs=129.4
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCC--eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSC--EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
..+...+...+|+|+|..++.+...++ .|++||+..... ..+..........+|+|+|+.++++.+.+|
T Consensus 214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~---------~~lt~~~g~~~~~~wSPDG~~La~~~~~~g 284 (448)
T PRK04792 214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR---------EKVTSFPGINGAPRFSPDGKKLALVLSKDG 284 (448)
T ss_pred ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe---------EEecCCCCCcCCeeECCCCCEEEEEEeCCC
Confidence 345567788999999965444433333 588888876321 112222233457899999984444566677
Q ss_pred e--EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC--cEEEEECCCCcccccccccCCCeeEEE
Q 015484 190 K--ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC--QLMIWDLRTNQTQQRVKAHEKEVNYLS 265 (406)
Q Consensus 190 ~--i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~i~ 265 (406)
. |.++|+.++.. ..+..+.......+|+|++..++++...++ .|.++|+.+++... +..........+
T Consensus 285 ~~~Iy~~dl~tg~~-------~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~ 356 (448)
T PRK04792 285 QPEIYVVDIATKAL-------TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGS 356 (448)
T ss_pred CeEEEEEECCCCCe-------EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCee
Confidence 5 67777766432 222234445667899995544555544444 46667777665432 221222334578
Q ss_pred ecCCCCcEEEEEeCCC--cEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCc--EEEEeCCCCCccccc
Q 015484 266 FNPYNEWVLATASSDT--TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRR--LMVWDLNRIGDEQLE 341 (406)
Q Consensus 266 ~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~ 341 (406)
|+|+|+.++++...++ .|.++|+.++. ...+... .......|+|+++.++++...+|. +.+++...
T Consensus 357 ~SpDG~~l~~~~~~~g~~~I~~~dl~~g~--~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G------- 426 (448)
T PRK04792 357 ITPDGRSMIMVNRTNGKFNIARQDLETGA--MQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG------- 426 (448)
T ss_pred ECCCCCEEEEEEecCCceEEEEEECCCCC--eEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCC-------
Confidence 9999995555444455 45557777654 2333322 122345899999876666666665 55556532
Q ss_pred ccccCCCCeeEEEecCCCCCeeeEEeCCC
Q 015484 342 LDAEDGPPELLFSHGGHKAKISDFSWNKN 370 (406)
Q Consensus 342 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 370 (406)
.....+..+.+.+...+|+|-
T Consensus 427 --------~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 427 --------RFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred --------CceEECcCCCCCcCCCccCCC
Confidence 222223334456777888873
No 251
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.44 E-value=1.2e-10 Score=109.29 Aligned_cols=218 Identities=15% Similarity=0.162 Sum_probs=136.3
Q ss_pred CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC---CeEEEEeCCCccCCceeeeeeeeecc
Q 015484 138 CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD---NKICLWDVSALAQDKVIDAMHVYEAH 214 (406)
Q Consensus 138 g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~ 214 (406)
..|.++|.... ....+..+...+...+|+|+|+ +|+.++.+ ..|.+||+.++.. ..+..+
T Consensus 170 ~~l~~~d~~g~---------~~~~l~~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~~-------~~~~~~ 232 (417)
T TIGR02800 170 YELQVADYDGA---------NPQTITRSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQR-------EKVASF 232 (417)
T ss_pred ceEEEEcCCCC---------CCEEeecCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCCE-------EEeecC
Confidence 35777777542 1344556677788999999998 77766543 4799999987532 112234
Q ss_pred CccEEEEEeeCCCCCEEEEEecCC--cEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCC--cEEEEeCCC
Q 015484 215 ESVVEDVSWHLKNENLFGSAGDDC--QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT--TVALFDMRK 290 (406)
Q Consensus 215 ~~~i~~i~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg--~i~vwd~~~ 290 (406)
...+.+++|+|++..++++.+.++ .|++||+.++... .+..+........|+|+++.++++....+ .|+++|+..
T Consensus 233 ~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~ 311 (417)
T TIGR02800 233 PGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG 311 (417)
T ss_pred CCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 455667899995555555555544 5888998876543 33334444557789999984444444444 577778775
Q ss_pred CCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC---cEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEe
Q 015484 291 MTVPLHILSSHTEEVFQVEWDPNHETVLASSADDR---RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSW 367 (406)
Q Consensus 291 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 367 (406)
.. ...+..+...+....|+|+++. ++.++.++ .|.+||+..... ..+ ... .......|
T Consensus 312 ~~--~~~l~~~~~~~~~~~~spdg~~-i~~~~~~~~~~~i~~~d~~~~~~------------~~l---~~~-~~~~~p~~ 372 (417)
T TIGR02800 312 GE--VRRLTFRGGYNASPSWSPDGDL-IAFVHREGGGFNIAVMDLDGGGE------------RVL---TDT-GLDESPSF 372 (417)
T ss_pred CC--EEEeecCCCCccCeEECCCCCE-EEEEEccCCceEEEEEeCCCCCe------------EEc---cCC-CCCCCceE
Confidence 43 3445555667788899999985 55555554 688888765111 111 111 12345689
Q ss_pred CCCCCcEEEEEeCCC--cEEEEeCCCc
Q 015484 368 NKNDPWVISSVADDN--TVQVWQMTDS 392 (406)
Q Consensus 368 s~~~~~~l~s~~~dg--~i~iw~~~~~ 392 (406)
+|++++++++...++ .+.+.+....
T Consensus 373 spdg~~l~~~~~~~~~~~l~~~~~~g~ 399 (417)
T TIGR02800 373 APNGRMILYATTRGGRGVLGLVSTDGR 399 (417)
T ss_pred CCCCCEEEEEEeCCCcEEEEEEECCCc
Confidence 999996555554443 3555555443
No 252
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=1.9e-10 Score=106.98 Aligned_cols=226 Identities=14% Similarity=0.155 Sum_probs=129.5
Q ss_pred CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCe--EEEecCCC--eEEEEeCCCccCCceeeeeeeeec
Q 015484 138 CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGY--LVSGSHDN--KICLWDVSALAQDKVIDAMHVYEA 213 (406)
Q Consensus 138 g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~--l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~ 213 (406)
+.|.+.|..... ...+......+..-+|+|+|+.. +++...+| .|.+.++..+... . +. .
T Consensus 165 ~~l~~~d~dG~~---------~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~---lt---~ 228 (428)
T PRK01029 165 GELWSVDYDGQN---------LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-K---IL---A 228 (428)
T ss_pred ceEEEEcCCCCC---------ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-E---ee---c
Confidence 356676765521 22344445566778999999742 22444444 5777787765431 1 12 2
Q ss_pred cCccEEEEEeeCCCCCEEEEEecCC----cEEEEECCCCc--ccccc-cccCCCeeEEEecCCCCcEEEEEeCCCcEEEE
Q 015484 214 HESVVEDVSWHLKNENLFGSAGDDC----QLMIWDLRTNQ--TQQRV-KAHEKEVNYLSFNPYNEWVLATASSDTTVALF 286 (406)
Q Consensus 214 ~~~~i~~i~~~p~~~~~l~~~~~dg----~i~i~d~~~~~--~~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vw 286 (406)
..+.....+|+|++..++++...+| .+.+|++..+. ....+ ..........+|+|+|+.++++...+|...+|
T Consensus 229 ~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly 308 (428)
T PRK01029 229 LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIY 308 (428)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEE
Confidence 2334456789995545554443333 34446766531 12222 22223446789999999444444456655555
Q ss_pred --eCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCC--CcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCe
Q 015484 287 --DMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADD--RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKI 362 (406)
Q Consensus 287 --d~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 362 (406)
++.........+..+...+....|+|+|+.++.++..+ ..|.+||+..... .. +......+
T Consensus 309 ~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~------------~~---Lt~~~~~~ 373 (428)
T PRK01029 309 IMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD------------YQ---LTTSPENK 373 (428)
T ss_pred EEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe------------EE---ccCCCCCc
Confidence 44322222444555556778899999998654444443 3688999876321 11 11122346
Q ss_pred eeEEeCCCCCcEEEEEeC--CCcEEEEeCCCccc
Q 015484 363 SDFSWNKNDPWVISSVAD--DNTVQVWQMTDSIY 394 (406)
Q Consensus 363 ~~~~~s~~~~~~l~s~~~--dg~i~iw~~~~~~~ 394 (406)
....|+|+|+++++++.. ...|.++++.++..
T Consensus 374 ~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 374 ESPSWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred cceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 778999999976656543 34688888877744
No 253
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.42 E-value=4.3e-11 Score=101.04 Aligned_cols=204 Identities=15% Similarity=0.193 Sum_probs=150.8
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
.+.+++++.+.+.. ..|.+|-..|++.=+.+...-. ..........|...+..+-|+-... .+++.+.|..+.-
T Consensus 67 mP~~~~~~~y~~e~-~~L~vg~~ngtvtefs~sedfn----km~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~~ 140 (404)
T KOG1409|consen 67 MPSPCSAMEYVSES-RRLYVGQDNGTVTEFALSEDFN----KMTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFAW 140 (404)
T ss_pred CCCCceEeeeeccc-eEEEEEEecceEEEEEhhhhhh----hcchhhhhhhhhcceeeEEecCCce-eEEEeccccceEE
Confidence 45789999999988 6799999999999998876433 2344566778999999999998777 8999999987764
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECC--CCcccccccccCCCeeEEEecCCCC
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR--TNQTQQRVKAHEKEVNYLSFNPYNE 271 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~v~~i~~~~~~~ 271 (406)
--.+.+...... .+ ....+++.+.- . +...|...|.|.+..+. .-..+.++.+|...+.+++|.|...
T Consensus 141 hc~e~~~~lg~Y----~~---~~~~t~~~~d~--~-~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~ 210 (404)
T KOG1409|consen 141 HCTESGNRLGGY----NF---ETPASALQFDA--L-YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR 210 (404)
T ss_pred EeeccCCcccce----Ee---eccCCCCceee--E-EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc
Confidence 444443321110 00 11122222221 1 33455566666655443 3345677789999999999999877
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 015484 272 WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI 335 (406)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~ 335 (406)
+|++|..|..+.+||+...+.....+.+|...|..+...+.-+ .+.+++.||.|.+|+++..
T Consensus 211 -~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~-~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 211 -LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTR-QLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred -EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhe-eeeeccCCCeEEEEeccce
Confidence 9999999999999999877766778899999999998888776 4889999999999998764
No 254
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=4.2e-10 Score=105.73 Aligned_cols=224 Identities=14% Similarity=0.197 Sum_probs=131.4
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEe-CC--CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKT-SS--CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~-~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
...+...+...+|+|++.. |+..+ .+ ..|++|++.+... ..+....+.+...+|+|+|+.++++.+.
T Consensus 194 l~~~~~~~~~p~wSpDG~~-la~~s~~~~~~~l~~~~l~~g~~---------~~l~~~~g~~~~~~~SpDG~~la~~~~~ 263 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKR-IAYVSFEQKRPRIFVQNLDTGRR---------EQITNFEGLNGAPAWSPDGSKLAFVLSK 263 (430)
T ss_pred EecCCCceeeeeECCCCCE-EEEEEcCCCCCEEEEEECCCCCE---------EEccCCCCCcCCeEECCCCCEEEEEEcc
Confidence 4467788999999999954 54444 32 3689999976422 1222233345578999999833345555
Q ss_pred CC--eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC--cEEEEECCCCcccccccccCCCeeE
Q 015484 188 DN--KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC--QLMIWDLRTNQTQQRVKAHEKEVNY 263 (406)
Q Consensus 188 dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~ 263 (406)
+| .|.+||+.++.. ..+..+........|+|++..++++...+| .|+++|+.+++.. .+.........
T Consensus 264 ~g~~~Iy~~d~~~~~~-------~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~~~~~ 335 (430)
T PRK00178 264 DGNPEIYVMDLASRQL-------SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGNYNAR 335 (430)
T ss_pred CCCceEEEEECCCCCe-------EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccc
Confidence 55 578888877532 122234444566789995555555544444 5777788776642 22212223345
Q ss_pred EEecCCCCcEEEEEeCCC--cEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCc--EEEEeCCCCCccc
Q 015484 264 LSFNPYNEWVLATASSDT--TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRR--LMVWDLNRIGDEQ 339 (406)
Q Consensus 264 i~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~--i~iwd~~~~~~~~ 339 (406)
..|+|+++.++++...++ .|.++|+.++.. ..+.. ........|+|+|+.++++...+|. +.++++..
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~--~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g----- 407 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV--RILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING----- 407 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCE--EEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-----
Confidence 789999994444443344 588889887543 33322 2223356899999876666655554 45555532
Q ss_pred ccccccCCCCeeEEEecCCCCCeeeEEeCCC
Q 015484 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKN 370 (406)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 370 (406)
.....+..+.+.+...+|+|-
T Consensus 408 ----------~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 408 ----------RVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred ----------CceEECcCCCCCcCCCccCCC
Confidence 111122233445677788874
No 255
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=1.3e-10 Score=109.24 Aligned_cols=218 Identities=12% Similarity=0.097 Sum_probs=132.7
Q ss_pred eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC---CeEEEEeCCCccCCceeeeeeeeeccC
Q 015484 139 EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD---NKICLWDVSALAQDKVIDAMHVYEAHE 215 (406)
Q Consensus 139 ~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~ 215 (406)
.|.++|.... ....+..+...+...+|+|+|+ .|+..+.+ ..|.+|++.++... .+....
T Consensus 180 ~l~~~d~~g~---------~~~~l~~~~~~~~~p~wSpDG~-~la~~s~~~~~~~l~~~~l~~g~~~-------~l~~~~ 242 (430)
T PRK00178 180 TLQRSDYDGA---------RAVTLLQSREPILSPRWSPDGK-RIAYVSFEQKRPRIFVQNLDTGRRE-------QITNFE 242 (430)
T ss_pred EEEEECCCCC---------CceEEecCCCceeeeeECCCCC-EEEEEEcCCCCCEEEEEECCCCCEE-------EccCCC
Confidence 4677777652 1344556777889999999998 76655433 36889999876421 112223
Q ss_pred ccEEEEEeeCCCCCEEEEEecCC--cEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCC--cEEEEeCCCC
Q 015484 216 SVVEDVSWHLKNENLFGSAGDDC--QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT--TVALFDMRKM 291 (406)
Q Consensus 216 ~~i~~i~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg--~i~vwd~~~~ 291 (406)
+.+....|+|++..++++...+| .|+++|+.+++.. .+..+........|+|+++.++++...+| .|+++|+..+
T Consensus 243 g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 243 GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 34556899995555555665555 5888899877643 34434455667899999995555544444 5777777665
Q ss_pred CCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC--cEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCC
Q 015484 292 TVPLHILSSHTEEVFQVEWDPNHETVLASSADDR--RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNK 369 (406)
Q Consensus 292 ~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 369 (406)
+. ..+...........|+|+++.++++...++ .|.+||+..... ..+. .. .......|+|
T Consensus 322 ~~--~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~------------~~lt-~~---~~~~~p~~sp 383 (430)
T PRK00178 322 RA--ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV------------RILT-DT---SLDESPSVAP 383 (430)
T ss_pred CE--EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE------------EEcc-CC---CCCCCceECC
Confidence 42 222222233456789999986555544444 477888765221 1111 11 1223568999
Q ss_pred CCCcEEEEEeCCCc--EEEEeCCCc
Q 015484 370 NDPWVISSVADDNT--VQVWQMTDS 392 (406)
Q Consensus 370 ~~~~~l~s~~~dg~--i~iw~~~~~ 392 (406)
+|++++++...++. |.++++..+
T Consensus 384 dg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 384 NGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred CCCEEEEEEecCCceEEEEEECCCC
Confidence 99976666655443 666666544
No 256
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.42 E-value=8.9e-11 Score=110.05 Aligned_cols=200 Identities=16% Similarity=0.165 Sum_probs=124.0
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCC---CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSS---CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
...+...+...+|+|++. .|+.+... ..|++|++.+.. ...+..+...+.+++|+|+++.++++.+.
T Consensus 185 l~~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~---------~~~~~~~~~~~~~~~~spDg~~l~~~~~~ 254 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQ---------REKVASFPGMNGAPAFSPDGSKLAVSLSK 254 (417)
T ss_pred eecCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCC---------EEEeecCCCCccceEECCCCCEEEEEECC
Confidence 345666788999999995 55555433 479999997632 12233455566789999999844455555
Q ss_pred CC--eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC--cEEEEECCCCcccccccccCCCeeE
Q 015484 188 DN--KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC--QLMIWDLRTNQTQQRVKAHEKEVNY 263 (406)
Q Consensus 188 dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~ 263 (406)
++ .|.+|++.++.. ..+..+........|+|++..++++...++ .|.++|+.+++. ..+..+...+..
T Consensus 255 ~~~~~i~~~d~~~~~~-------~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~ 326 (417)
T TIGR02800 255 DGNPDIYVMDLDGKQL-------TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNAS 326 (417)
T ss_pred CCCccEEEEECCCCCE-------EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccC
Confidence 54 588888876532 122223344456789984444444443343 577888876653 333334556778
Q ss_pred EEecCCCCcEEEEEeCCC---cEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCc--EEEEeC
Q 015484 264 LSFNPYNEWVLATASSDT---TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRR--LMVWDL 332 (406)
Q Consensus 264 i~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~--i~iwd~ 332 (406)
+.|+|++. +++.++.++ .|.+||+.+.. ...+... .......|+|+++.++++...++. +.+.+.
T Consensus 327 ~~~spdg~-~i~~~~~~~~~~~i~~~d~~~~~--~~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 327 PSWSPDGD-LIAFVHREGGGFNIAVMDLDGGG--ERVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred eEECCCCC-EEEEEEccCCceEEEEEeCCCCC--eEEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 89999998 666666554 78889987643 2333322 234556899999865555544443 444443
No 257
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.40 E-value=2.8e-12 Score=128.40 Aligned_cols=189 Identities=17% Similarity=0.346 Sum_probs=146.4
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee-CCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK-GHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
+-..|.++.-+|..+ +.+||+.||.|++|...... ++..++ ..+..|+.+.|+.+|+ .+..+..||.+.
T Consensus 2207 ~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~--------~v~~~rt~g~s~vtr~~f~~qGn-k~~i~d~dg~l~ 2276 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQ--------QVVCFRTAGNSRVTRSRFNHQGN-KFGIVDGDGDLS 2276 (2439)
T ss_pred ccCceeeecCCCCCc-eEEecCCCceEEEEeccCCC--------eEEEeeccCcchhhhhhhcccCC-ceeeeccCCcee
Confidence 346788888899885 57799999999999988732 233332 2338899999999998 899999999999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe---cCCcEEEEECCCCccc-ccccccCCCeeEEEecC
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG---DDCQLMIWDLRTNQTQ-QRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~---~dg~i~i~d~~~~~~~-~~~~~~~~~v~~i~~~~ 268 (406)
+|.+.. ++....+.|.....++.|-. .++++++ .++.+.+||..-.... ..-..|.+.++++++.|
T Consensus 2277 l~q~~p-------k~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P 2346 (2439)
T KOG1064|consen 2277 LWQASP-------KPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAP 2346 (2439)
T ss_pred ecccCC-------cceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcC
Confidence 999873 23455677888999999873 6666654 6789999997643221 11278999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI 335 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~ 335 (406)
..+ +|++|+.+|.|++||+|..+. ++.+.. ++ .. .++++|+..|.++||++...
T Consensus 2347 ~~q-llisggr~G~v~l~D~rqrql-~h~~~~---------~~-~~-~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2347 KHQ-LLISGGRKGEVCLFDIRQRQL-RHTFQA---------LD-TR-EYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred cce-EEEecCCcCcEEEeehHHHHH-HHHhhh---------hh-hh-heeeccCcccceEEEEcccc
Confidence 998 999999999999999997443 444433 44 33 36999999999999999874
No 258
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=1.7e-10 Score=103.54 Aligned_cols=242 Identities=15% Similarity=0.243 Sum_probs=156.9
Q ss_pred eEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCC-eEEE-----ecCCCeEE
Q 015484 119 NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEG-YLVS-----GSHDNKIC 192 (406)
Q Consensus 119 ~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s-----~~~dg~i~ 192 (406)
++..|+++.. +++--..+.+++|++.+- ..+.. .-|...|..+.+||.+.. .+|+ ++.-+.|+
T Consensus 129 W~~qfs~dEs--l~arlv~nev~f~~~~~f-------~~~~~--kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vr 197 (566)
T KOG2315|consen 129 WVPQFSIDES--LAARLVSNEVQFYDLGSF-------KTIQH--KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVR 197 (566)
T ss_pred cccccccchh--hhhhhhcceEEEEecCCc-------cceee--eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEE
Confidence 6788888773 444455678999999872 11122 336778999999996433 3433 35567899
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec-----------CCcEEEEECCCCcccccccccCCCe
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD-----------DCQLMIWDLRTNQTQQRVKAHEKEV 261 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~v 261 (406)
||..........+.. +.| ....=..+.|++.+..+|+.++. ...+++.++........+. ..++|
T Consensus 198 i~~~~~~~~~~~~a~-ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPV 273 (566)
T KOG2315|consen 198 IYKYPEEGQHQPVAN-KSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPV 273 (566)
T ss_pred Eeccccccccchhhh-ccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCc
Confidence 998874332222211 111 12223356788766666655543 2368888888444444443 57899
Q ss_pred eEEEecCCCCcEEEE-EeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeC--CCcEEEEeCCCCCcc
Q 015484 262 NYLSFNPYNEWVLAT-ASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSAD--DRRLMVWDLNRIGDE 338 (406)
Q Consensus 262 ~~i~~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~--dg~i~iwd~~~~~~~ 338 (406)
.++.|+|++..+.++ |-.--.+.|||++. .++.. ...++=+++-|+|.|+.++++|-. -|.|-|||+.+
T Consensus 274 hdv~W~~s~~EF~VvyGfMPAkvtifnlr~--~~v~d--f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n---- 345 (566)
T KOG2315|consen 274 HDVTWSPSGREFAVVYGFMPAKVTIFNLRG--KPVFD--FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN---- 345 (566)
T ss_pred eEEEECCCCCEEEEEEecccceEEEEcCCC--CEeEe--CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccc----
Confidence 999999999733333 33345899999985 33433 346788999999999865555433 58899999987
Q ss_pred cccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeC-----CCcEEEEeCCCcccC
Q 015484 339 QLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVAD-----DNTVQVWQMTDSIYR 395 (406)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~-----dg~i~iw~~~~~~~~ 395 (406)
.+++..+.. ..-+-+.|+|+|++++.+.+. |+.++||++...++.
T Consensus 346 ----------~K~i~~~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~ 395 (566)
T KOG2315|consen 346 ----------RKLIAKFKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH 395 (566)
T ss_pred ----------hhhcccccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceee
Confidence 233333332 234567999999975555443 889999999988653
No 259
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.39 E-value=5.8e-11 Score=100.27 Aligned_cols=256 Identities=18% Similarity=0.278 Sum_probs=183.0
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
.+..+|.+.|+....-|..+ -+.+.+.|.+++||--.+.. +.-|.. ...-..+++++.+.+... .|+.|-..
T Consensus 18 ~~~eG~~d~vn~~~l~~~e~-gv~~~s~drtvrv~lkrds~-----q~wpsI-~~~mP~~~~~~~y~~e~~-~L~vg~~n 89 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAILIPKEE-GVISVSEDRTVRVWLKRDSG-----QYWPSI-YHYMPSPCSAMEYVSESR-RLYVGQDN 89 (404)
T ss_pred hhhcCchhhhhhheeccCCC-CeEEccccceeeeEEecccc-----ccCchh-hhhCCCCceEeeeeccce-EEEEEEec
Confidence 34457888899888888664 38889999999999765532 122211 112346789999998777 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
|++.-+.+...- ..+...+.+..|...+..+.|+. ....+++.+.|..+.---.+.+..+..+.. ....+++.+.-
T Consensus 90 gtvtefs~sedf--nkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~ 165 (404)
T KOG1409|consen 90 GTVTEFALSEDF--NKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDA 165 (404)
T ss_pred ceEEEEEhhhhh--hhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceee
Confidence 999988765421 11233456677999999999986 577888889888776555555554433210 11111122211
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCC-CCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCC
Q 015484 269 YNEWVLATASSDTTVALFDMRKM-TVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDG 347 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 347 (406)
. +...|...|.|.+-.+... -.++.++.+|.+.+.+++|.|..+ +|.+|..|..+.+||+...
T Consensus 166 ~---~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~------------ 229 (404)
T KOG1409|consen 166 L---YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGR------------ 229 (404)
T ss_pred E---EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc-EEEeccccCceEEEeccCC------------
Confidence 1 4455666677766555432 345888999999999999999886 7999999999999999752
Q ss_pred CCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 348 PPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 348 ~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
........+|...|..+..-+.-+ .+.+++.||.|.+|+.+....
T Consensus 230 -~g~~~el~gh~~kV~~l~~~~~t~-~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 230 -KGTAYELQGHNDKVQALSYAQHTR-QLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred -cceeeeeccchhhhhhhhhhhhhe-eeeeccCCCeEEEEeccceee
Confidence 345567788999999998887777 688999999999999987654
No 260
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=9.6e-10 Score=102.34 Aligned_cols=206 Identities=11% Similarity=0.094 Sum_probs=118.9
Q ss_pred cCCceeEEEEcCCCCc--EEEEEeCCC--eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEE-ecCC
Q 015484 114 VDGEVNRARCMPQKPN--LVGTKTSSC--EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVS-GSHD 188 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~--~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s-~~~d 188 (406)
....+..-+|+|+|.. ++.+...+| .|++.++..+. . ..+....+.....+|+|+|+ .|+. ...+
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~------~---~~lt~~~g~~~~p~wSPDG~-~Laf~s~~~ 252 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA------G---KKILALQGNQLMPTFSPRKK-LLAFISDRY 252 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCC------c---eEeecCCCCccceEECCCCC-EEEEEECCC
Confidence 4455677799999865 323444443 57777887632 1 22233334455789999998 5554 4333
Q ss_pred C----eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEE--ECCC-CcccccccccCCCe
Q 015484 189 N----KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIW--DLRT-NQTQQRVKAHEKEV 261 (406)
Q Consensus 189 g----~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~--d~~~-~~~~~~~~~~~~~v 261 (406)
| .+..|++..+..... ..............+|+|++..++++...+|...+| ++.. +.....+......+
T Consensus 253 g~~di~~~~~~~~~g~~g~~---~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~ 329 (428)
T PRK01029 253 GNPDLFIQSFSLETGAIGKP---RRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNS 329 (428)
T ss_pred CCcceeEEEeecccCCCCcc---eEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCc
Confidence 3 344467665321111 111122223345679999544455454456655555 4432 22233343344566
Q ss_pred eEEEecCCCCcEEEEEeCCC--cEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCC--CcEEEEeCCC
Q 015484 262 NYLSFNPYNEWVLATASSDT--TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADD--RRLMVWDLNR 334 (406)
Q Consensus 262 ~~i~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d--g~i~iwd~~~ 334 (406)
....|+|+|+.++++...+| .|.+||+.+++. ..+......+....|+|+++.+++++... ..|.++|+..
T Consensus 330 ~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~--~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 330 SCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD--YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred cceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe--EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 78899999994444444333 699999987653 34443344677899999998655555443 4577778765
No 261
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=5.5e-11 Score=106.77 Aligned_cols=208 Identities=13% Similarity=0.169 Sum_probs=152.6
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
..-..++++...-.++++| ....|+-++++.+ .-+..+....+++++|..++... +|++|+.+|.|..||
T Consensus 134 ~~GRDm~y~~~scDly~~g-sg~evYRlNLEqG--------rfL~P~~~~~~~lN~v~in~~hg-Lla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 134 KFGRDMKYHKPSCDLYLVG-SGSEVYRLNLEQG--------RFLNPFETDSGELNVVSINEEHG-LLACGTEDGVVEFWD 203 (703)
T ss_pred cCCccccccCCCccEEEee-cCcceEEEEcccc--------ccccccccccccceeeeecCccc-eEEecccCceEEEec
Confidence 3455667766554544444 4456888888874 22444555668999999999887 999999999999999
Q ss_pred CCCccCCceeeeeeeeeccCc-----cEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-cccCCCeeEEEecCC
Q 015484 196 VSALAQDKVIDAMHVYEAHES-----VVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKEVNYLSFNPY 269 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~-----~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~i~~~~~ 269 (406)
.+.......+........|.+ .|+++.|+. ++-.+++|+.+|.+.|||+|+.+++..- ....-+|..+.|.+.
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT 282 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccccc
Confidence 988655444444333334443 499999995 5888999999999999999998876544 445678999999776
Q ss_pred CC-cEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcc
Q 015484 270 NE-WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE 338 (406)
Q Consensus 270 ~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 338 (406)
+. ..+++. ....++|||-.+++. ...+.. ...++.+++-|++. ++.++-.++.+..|=+...+..
T Consensus 283 ~~q~~v~S~-Dk~~~kiWd~~~Gk~-~asiEp-t~~lND~C~~p~sG-m~f~Ane~~~m~~yyiP~LGPa 348 (703)
T KOG2321|consen 283 DQQNKVVSM-DKRILKIWDECTGKP-MASIEP-TSDLNDFCFVPGSG-MFFTANESSKMHTYYIPSLGPA 348 (703)
T ss_pred CCCceEEec-chHHhhhcccccCCc-eeeccc-cCCcCceeeecCCc-eEEEecCCCcceeEEccccCCC
Confidence 33 245544 346899999988765 555544 45699999999986 7999999999988888775543
No 262
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.32 E-value=7e-11 Score=98.52 Aligned_cols=270 Identities=16% Similarity=0.238 Sum_probs=167.7
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCC------------CCeeEEEecCC-CCCe
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHD------------KEGYGLSWSPF-KEGY 181 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~l~~~~~-~~~~ 181 (406)
...|+++.|...| .+|++|...|.|.+|....... ...+-...+++|. ..|..+.|..+ +.+.
T Consensus 26 ad~ItaVefd~tg-~YlatGDkgGRVvlfer~~s~~---ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~h 101 (460)
T COG5170 26 ADKITAVEFDETG-LYLATGDKGGRVVLFEREKSYG---CEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNH 101 (460)
T ss_pred cceeeEEEecccc-ceEeecCCCceEEEeecccccc---cchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcce
Confidence 4568899998888 7899999999999998776431 1122234455554 35788888764 4446
Q ss_pred EEEecCCCeEEEEeCCCccCC----------------------ce--------------eeeeeee-eccCccEEEEEee
Q 015484 182 LVSGSHDNKICLWDVSALAQD----------------------KV--------------IDAMHVY-EAHESVVEDVSWH 224 (406)
Q Consensus 182 l~s~~~dg~i~iwd~~~~~~~----------------------~~--------------~~~~~~~-~~~~~~i~~i~~~ 224 (406)
++..+.|.+|++|.+...... +. ..+.+.+ ..|..-|+++.|+
T Consensus 102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N 181 (460)
T COG5170 102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN 181 (460)
T ss_pred EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence 667779999999988653100 00 0111222 4577889999998
Q ss_pred CCCCCEEEEEecCCcEEEEECCCCccccc---cccc-----CCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCC--
Q 015484 225 LKNENLFGSAGDDCQLMIWDLRTNQTQQR---VKAH-----EKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVP-- 294 (406)
Q Consensus 225 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~-----~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-- 294 (406)
. +...++ ...|-.|.+|++.-...... ++.| ..-|++..|+|...+++.-.+..|.|++-|+|.....
T Consensus 182 s-D~et~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn 259 (460)
T COG5170 182 S-DKETLL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN 259 (460)
T ss_pred C-chheee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC
Confidence 6 444443 45677899999875433222 2222 3458889999988778888888999999999953211
Q ss_pred -------------cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCC
Q 015484 295 -------------LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAK 361 (406)
Q Consensus 295 -------------~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 361 (406)
...+..-...|..+.|+++|++ +++-+ --+|+|||.+....+.........-...+.... ....
T Consensus 260 ~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngry-IlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~Y-EnDa 336 (460)
T COG5170 260 SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRY-ILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVY-ENDA 336 (460)
T ss_pred chhhhhhccCcccchhHHHHhhhhcceEEcCCCcE-EEEec-cceEEEEecccccCCceeechHHHHHHHHHhhh-hccc
Confidence 1112223357889999999974 55444 568999999875443322111000000000000 0122
Q ss_pred e---eeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 362 I---SDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 362 v---~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
| ..+.|+.+.+ -+.+|+..+..-||-+.+.-.
T Consensus 337 ifdkFeisfSgd~~-~v~sgsy~NNfgiyp~~ssg~ 371 (460)
T COG5170 337 IFDKFEISFSGDDK-HVLSGSYSNNFGIYPTDSSGF 371 (460)
T ss_pred eeeeEEEEecCCcc-cccccccccceeeeccccCCC
Confidence 2 3467787777 477888777777776544433
No 263
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.30 E-value=5.2e-09 Score=107.20 Aligned_cols=266 Identities=10% Similarity=0.104 Sum_probs=161.5
Q ss_pred eEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCc----eee-eCCCCCeeEEEecCCCCCeEEEe-cCCCeEE
Q 015484 119 NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPD----LRL-KGHDKEGYGLSWSPFKEGYLVSG-SHDNKIC 192 (406)
Q Consensus 119 ~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~----~~~-~~h~~~v~~l~~~~~~~~~l~s~-~~dg~i~ 192 (406)
..+++.+.+..++++-+.++.|+++|.........+..... -.+ ..+-....+|++.+++. .|+.+ ...+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn-~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKN-LLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCC-EEEEEeCCCceEE
Confidence 45788876556788888889999999865321110000000 000 00112347899998776 55554 4457899
Q ss_pred EEeCCCccCCceeeeee----eeecc-------CccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccc--------
Q 015484 193 LWDVSALAQDKVIDAMH----VYEAH-------ESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQR-------- 253 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~----~~~~~-------~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~-------- 253 (406)
++|+.++.. ..+.... .+.+. -.....++++|.++.++++.+.++.|++||..++.....
T Consensus 650 ~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~ 728 (1057)
T PLN02919 650 EIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN 728 (1057)
T ss_pred EEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence 999876421 1110000 00000 112457899987778888888899999999876543210
Q ss_pred ccc------cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcE------------EecC--------CCCCeEE
Q 015484 254 VKA------HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLH------------ILSS--------HTEEVFQ 307 (406)
Q Consensus 254 ~~~------~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~------------~~~~--------h~~~v~~ 307 (406)
..+ .-.....|+++|++..++++-+.++.|++||+.++...+. .+-. .-.....
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 000 1123467999999886666777788999999986442110 0000 0113468
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc-----cCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCC
Q 015484 308 VEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA-----EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDN 382 (406)
Q Consensus 308 i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg 382 (406)
++++++|. ++++-..+++|++||........ .... .++. ...+.-.....++++++|+ ++++-+.++
T Consensus 809 vavd~dG~-LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~-----~~~a~l~~P~GIavd~dG~-lyVaDt~Nn 880 (1057)
T PLN02919 809 VLCAKDGQ-IYVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGK-----ALKAQLSEPAGLALGENGR-LFVADTNNS 880 (1057)
T ss_pred eeEeCCCc-EEEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCc-----ccccccCCceEEEEeCCCC-EEEEECCCC
Confidence 89999996 78888889999999987522110 0000 0000 0112234578899999998 788888899
Q ss_pred cEEEEeCCCccc
Q 015484 383 TVQVWQMTDSIY 394 (406)
Q Consensus 383 ~i~iw~~~~~~~ 394 (406)
.|++|++.++..
T Consensus 881 ~Irvid~~~~~~ 892 (1057)
T PLN02919 881 LIRYLDLNKGEA 892 (1057)
T ss_pred EEEEEECCCCcc
Confidence 999999988754
No 264
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.29 E-value=9.1e-09 Score=93.45 Aligned_cols=235 Identities=11% Similarity=0.151 Sum_probs=147.0
Q ss_pred CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC----CCeEEEEeCCCccCCceeeeeeeeec
Q 015484 138 CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH----DNKICLWDVSALAQDKVIDAMHVYEA 213 (406)
Q Consensus 138 g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~ 213 (406)
+.|++|++..... ......... -......++++|+++ +|.++.. +|.|..|.+.... ..+..+.....
T Consensus 13 ~gI~~~~~d~~~g----~l~~~~~~~-~~~~Ps~l~~~~~~~-~LY~~~e~~~~~g~v~~~~i~~~~--g~L~~~~~~~~ 84 (345)
T PF10282_consen 13 GGIYVFRFDEETG----TLTLVQTVA-EGENPSWLAVSPDGR-RLYVVNEGSGDSGGVSSYRIDPDT--GTLTLLNSVPS 84 (345)
T ss_dssp TEEEEEEEETTTT----EEEEEEEEE-ESSSECCEEE-TTSS-EEEEEETTSSTTTEEEEEEEETTT--TEEEEEEEEEE
T ss_pred CcEEEEEEcCCCC----CceEeeeec-CCCCCceEEEEeCCC-EEEEEEccccCCCCEEEEEECCCc--ceeEEeeeecc
Confidence 6899998844221 111122221 234456789999888 7777765 5799999987642 22333344443
Q ss_pred cCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC-ccccc---cc----------ccCCCeeEEEecCCCCcEEEEEeC
Q 015484 214 HESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN-QTQQR---VK----------AHEKEVNYLSFNPYNEWVLATASS 279 (406)
Q Consensus 214 ~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~---~~----------~~~~~v~~i~~~~~~~~~l~~~~~ 279 (406)
.......++++|++..++++...+|.|.++++... ..... +. .......++.++|+++.++++.-.
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG 164 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG 164 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT
T ss_pred CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC
Confidence 44556678999954445554557999999999873 32211 10 123456789999999955544444
Q ss_pred CCcEEEEeCCCCCCCcE---Ee-cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEe
Q 015484 280 DTTVALFDMRKMTVPLH---IL-SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH 355 (406)
Q Consensus 280 dg~i~vwd~~~~~~~~~---~~-~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 355 (406)
...|.+|++......+. .+ .........+.|+|+++.+.++.-.++.|.++++....... ..+...
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~----------~~~~~~ 234 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSL----------TEIQTI 234 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE----------EEEEEE
T ss_pred CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCce----------eEEEEe
Confidence 55899999986552222 12 23446789999999998777777789999999988322111 111111
Q ss_pred c----C--CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 356 G----G--HKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 356 ~----~--h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
. + .......++++|+|++++++....+.|.+|+++
T Consensus 235 ~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 235 STLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp ESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred eeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 1 1 122578899999999888888888999999994
No 265
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=1.8e-10 Score=106.19 Aligned_cols=255 Identities=16% Similarity=0.270 Sum_probs=175.0
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc-------CCCCCceeeeCCCCCeeEEEecCCCCCeEEEe
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ-------DDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSG 185 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~-------~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 185 (406)
+......|+.|+... .++|+|+.||.++|..+.+...... .....-.++.||+..|.-+.|+.... .|-|.
T Consensus 12 PnnvkL~c~~WNke~-gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q-KLTtS 89 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKES-GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ-KLTTS 89 (1189)
T ss_pred CCCceEEEEEEcccC-CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc-ccccc
Confidence 345678899999977 6899999999999999876433221 12223456889999999999998877 89999
Q ss_pred cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccc-ccccccCCCeeEE
Q 015484 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ-QRVKAHEKEVNYL 264 (406)
Q Consensus 186 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~v~~i 264 (406)
..+|.|.+|-+-++.--..+ .....++.|.+++|+. ++..++....||.|.+=.+...+.. +.++ ......+
T Consensus 90 Dt~GlIiVWmlykgsW~EEM----iNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l~hv 162 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEM----INNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNRIWGKELK--GQLLAHV 162 (1189)
T ss_pred CCCceEEEEeeecccHHHHH----hhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeeccceecchhcc--hheccce
Confidence 99999999998776422111 1123567899999997 6788888899999888776644321 1122 2334578
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCCC------C-c---EEecCCCCCeEEEEEc--------CCCCCEEEEEeCCCc
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMRKMTV------P-L---HILSSHTEEVFQVEWD--------PNHETVLASSADDRR 326 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~------~-~---~~~~~h~~~v~~i~~~--------p~~~~~l~s~~~dg~ 326 (406)
.|+++.+ .++.+-..|.+.+||....-. . + ..+......|..+.|. |+.+ .|+.+-..|.
T Consensus 163 ~ws~D~~-~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavcy~nGr 240 (1189)
T KOG2041|consen 163 LWSEDLE-QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVCYANGR 240 (1189)
T ss_pred eecccHH-HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEEEcCce
Confidence 9999988 666777889999999764211 0 0 1111222346667774 4565 5899999999
Q ss_pred EEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCC---------CcEEEEeCCCccc
Q 015484 327 LMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADD---------NTVQVWQMTDSIY 394 (406)
Q Consensus 327 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~d---------g~i~iw~~~~~~~ 394 (406)
+.|-.-.+. +.++..-.| -.|.++.|+++|. +|+.+|.| +.|++|.+-..++
T Consensus 241 ~QiMR~eND-------------~~Pvv~dtg--m~~vgakWnh~G~-vLAvcG~~~da~~~~d~n~v~Fysp~G~i~ 301 (1189)
T KOG2041|consen 241 MQIMRSEND-------------PEPVVVDTG--MKIVGAKWNHNGA-VLAVCGNDSDADEPTDSNKVHFYSPYGHIV 301 (1189)
T ss_pred ehhhhhcCC-------------CCCeEEecc--cEeecceecCCCc-EEEEccCcccccCccccceEEEeccchhhe
Confidence 888654431 122222222 4588999999999 78887765 3577776655443
No 266
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.25 E-value=4.8e-10 Score=107.53 Aligned_cols=195 Identities=18% Similarity=0.286 Sum_probs=146.5
Q ss_pred eeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCe-----eEEEecCCCCCeEEEecCCCeEE
Q 015484 118 VNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEG-----YGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 118 v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v-----~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
|....+.-.. ..++.++.+..+.+||........ .. .+...+ .-+.++++.= ++++|+.-+.|.
T Consensus 90 i~g~~l~~e~-k~i~l~~~~ns~~i~d~~~~~~~~--------~i-~~~er~~l~~~~~~g~s~~~~-~i~~gsv~~~ii 158 (967)
T KOG0974|consen 90 IFGAKLFEEN-KKIALVTSRNSLLIRDSKNSSVLS--------KI-QSDERCTLYSSLIIGDSAEEL-YIASGSVFGEII 158 (967)
T ss_pred ccccchhhhc-ceEEEEEcCceEEEEecccCceeh--------hc-CCCceEEEEeEEEEeccCcEE-EEEeccccccEE
Confidence 3334444444 467888888899999988743211 11 122211 1223344333 899999999999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccc-cccccCCCeeEEEecCCCC
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ-RVKAHEKEVNYLSFNPYNE 271 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~i~~~~~~~ 271 (406)
+|+....+.. ..+.+|.+.|.++.|+. ++++++++++|.++|+|++.+.+... ..-+|...|..+.|+|+
T Consensus 159 vW~~~~dn~p------~~l~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-- 229 (967)
T KOG0974|consen 159 VWKPHEDNKP------IRLKGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-- 229 (967)
T ss_pred EEeccccCCc------ceecccCCceEEEEEcc-CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--
Confidence 9998833221 24678999999999996 79999999999999999999988766 55789999999999997
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCcEEecCCCC-CeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCC
Q 015484 272 WVLATASSDTTVALFDMRKMTVPLHILSSHTE-EVFQVEWDPNHETVLASSADDRRLMVWDLNRIG 336 (406)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~-~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 336 (406)
.+++++.|-+.++|+..... +..+..|.. .+..++..+... +++|++.||.+++||+....
T Consensus 230 -~i~t~gedctcrvW~~~~~~--l~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 230 -RIITVGEDCTCRVWGVNGTQ--LEVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred -eeEEeccceEEEEEecccce--ehhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhhccc
Confidence 69999999999999765432 446667764 688999988875 79999999999999987643
No 267
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=1.6e-09 Score=97.30 Aligned_cols=259 Identities=14% Similarity=0.230 Sum_probs=148.2
Q ss_pred CCeEEEEEeecCCceeEEEEcCCCCcEEEEEeC-----------CCeEEEEeCCCccccccCCCCCceeeeC--CCCCe-
Q 015484 104 PKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTS-----------SCEVYVFDCAKQAEKQQDDCDPDLRLKG--HDKEG- 169 (406)
Q Consensus 104 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~-----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~--h~~~v- 169 (406)
+.+...+++.|++ |.-+.|||.. .+|+|-+. ...+.|||+.++.. ...+.. ....+
T Consensus 239 ~~f~r~~RF~Hp~-Vq~idfSP~E-kYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~l--------krsF~~~~~~~~~W 308 (698)
T KOG2314|consen 239 ESFDRIQRFYHPG-VQFIDFSPNE-KYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLL--------KRSFPVIKSPYLKW 308 (698)
T ss_pred ccHHHHHhccCCC-ceeeecCCcc-ceEEEecCCccccCcccCCCceEEEEEccccch--------hcceeccCCCcccc
Confidence 3466677888986 8899999988 57887654 24699999998543 222222 22222
Q ss_pred eEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCC-----------------------
Q 015484 170 YGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLK----------------------- 226 (406)
Q Consensus 170 ~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~----------------------- 226 (406)
.-+.||.+++ ++|.-.. .+|.||+..+.... ..-.-....|....|+|.
T Consensus 309 P~frWS~DdK-y~Arm~~-~sisIyEtpsf~ll------d~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~ev 380 (698)
T KOG2314|consen 309 PIFRWSHDDK-YFARMTG-NSISIYETPSFMLL------DKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEV 380 (698)
T ss_pred ceEEeccCCc-eeEEecc-ceEEEEecCceeee------cccccCCccccCcccCCCcceEEEEcccccCCcceEEEEec
Confidence 3468999888 8877655 56888886542110 000001122333333331
Q ss_pred -----------------------CCCEEEEE----------ecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcE
Q 015484 227 -----------------------NENLFGSA----------GDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWV 273 (406)
Q Consensus 227 -----------------------~~~~l~~~----------~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 273 (406)
++.+|+.- +.-..+-|+.++........-.....|...+|-|.|+.+
T Consensus 381 Ps~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF 460 (698)
T KOG2314|consen 381 PSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKF 460 (698)
T ss_pred CccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeE
Confidence 22333211 111123334443332211112235667889999999844
Q ss_pred EEEEeCC--CcEEEEeCCC-CCCCcEEecCCCCCeEEEEEcCCCCCEEEEE---eCCCcEEEEeCCCCCcccccccccCC
Q 015484 274 LATASSD--TTVALFDMRK-MTVPLHILSSHTEEVFQVEWDPNHETVLASS---ADDRRLMVWDLNRIGDEQLELDAEDG 347 (406)
Q Consensus 274 l~~~~~d--g~i~vwd~~~-~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~~ 347 (406)
.+..+.+ .++.+|.+.+ ...+-..........+.+.|+|.|+. ++.+ |..|.+.++|+......
T Consensus 461 ~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~f-vvva~l~s~~g~l~F~D~~~a~~k--------- 530 (698)
T KOG2314|consen 461 AVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRF-VVVAALVSRRGDLEFYDTDYADLK--------- 530 (698)
T ss_pred EEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcE-EEEEEecccccceEEEecchhhhh---------
Confidence 3333333 4789998873 33222222223356789999999985 4443 45788999998751110
Q ss_pred CCeeEEEecCCCCCeeeEEeCCCCCcEEEEEe------CCCcEEEEeCCCcccCC
Q 015484 348 PPELLFSHGGHKAKISDFSWNKNDPWVISSVA------DDNTVQVWQMTDSIYRD 396 (406)
Q Consensus 348 ~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~------~dg~i~iw~~~~~~~~~ 396 (406)
......|. ..+.+.|.|.|+| +++++ .|..-+||++...++++
T Consensus 531 ----~~~~~eh~-~at~veWDPtGRY-vvT~ss~wrhk~d~GYri~tfqGrll~~ 579 (698)
T KOG2314|consen 531 ----DTASPEHF-AATEVEWDPTGRY-VVTSSSSWRHKVDNGYRIFTFQGRLLKE 579 (698)
T ss_pred ----hccCcccc-ccccceECCCCCE-EEEeeehhhhccccceEEEEeecHHHHH
Confidence 01112232 4678999999997 44544 35668899888776643
No 268
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.23 E-value=4.7e-09 Score=86.05 Aligned_cols=247 Identities=15% Similarity=0.104 Sum_probs=158.1
Q ss_pred eEEEEcCC----CCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEE
Q 015484 119 NRARCMPQ----KPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLW 194 (406)
Q Consensus 119 ~~i~~~p~----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 194 (406)
..+.|.|- .-.+||.|+..|...+|...+... .......|...|+-+.=.-+....+..++.|.++++.
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~-------h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~ 143 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDG-------HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTM 143 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCccc-------ceeeecccccchhhhhhhcccccceeeccCCcceeEE
Confidence 34556552 224799999999999999986321 1222233444333221111222257778899999999
Q ss_pred eCCCccCCceeeeeeeeeccC--ccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc--cc-cccccCCCeeEEEecCC
Q 015484 195 DVSALAQDKVIDAMHVYEAHE--SVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT--QQ-RVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 195 d~~~~~~~~~~~~~~~~~~~~--~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~--~~-~~~~~~~~v~~i~~~~~ 269 (406)
+++.+..... .|. -.+++++.++ +++++++.+....|..|.+..... +. ........-.+.+|+..
T Consensus 144 ~~~~~s~~~~--------~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~ 214 (344)
T KOG4532|consen 144 VVSGDSNKFA--------VHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEN 214 (344)
T ss_pred EEecCcccce--------eeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccC
Confidence 9876543221 122 2378889998 789999999999999999875432 22 12334455677889988
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCcEE----ecCCCCCeEEEEEcCCCCC-EEEEEeCCCcEEEEeCCCCCcccccccc
Q 015484 270 NEWVLATASSDTTVALFDMRKMTVPLHI----LSSHTEEVFQVEWDPNHET-VLASSADDRRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~----~~~h~~~v~~i~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 344 (406)
.. .+|++..||++.|||+|....|... -..|.+.+..+.|++.|.. +|...-.-+.+.+-|+++....+.....
T Consensus 215 ~~-~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~ 293 (344)
T KOG4532|consen 215 DL-QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIP 293 (344)
T ss_pred cc-eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecC
Confidence 87 8999999999999999988765443 3458899999999987643 3444445678999999985543322111
Q ss_pred cCCCCeeEEEecCCCC-CeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 345 EDGPPELLFSHGGHKA-KISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 345 ~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
++. ...|.. .|+...|+.++.. +.+.+++ .+.=|++.+
T Consensus 294 ~d~-------~~~~~tq~ifgt~f~~~n~s-~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 294 DDV-------ERKHNTQHIFGTNFNNENES-NDVKNEL-QGAEYNILS 332 (344)
T ss_pred ccc-------cccccccccccccccCCCcc-cccccch-hhheeeccc
Confidence 111 122333 3888888887764 3343433 244555544
No 269
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.20 E-value=1.4e-10 Score=116.54 Aligned_cols=196 Identities=17% Similarity=0.314 Sum_probs=146.8
Q ss_pred eeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcE
Q 015484 161 RLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQL 240 (406)
Q Consensus 161 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i 240 (406)
.++.+-..|.++.=+|... +.+||+.||.|++|.-..++..-.+ ++ ...+.|+.+.|+. .++.+..+..||.+
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~---rt--~g~s~vtr~~f~~-qGnk~~i~d~dg~l 2275 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCF---RT--AGNSRVTRSRFNH-QGNKFGIVDGDGDL 2275 (2439)
T ss_pred EeecccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEEe---ec--cCcchhhhhhhcc-cCCceeeeccCCce
Confidence 3444556788888888888 8999999999999998776532211 21 2237889999997 56777788889999
Q ss_pred EEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeC---CCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCE
Q 015484 241 MIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS---DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETV 317 (406)
Q Consensus 241 ~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~ 317 (406)
.+|.+. .+.....+.|......+.|-. . ++++++. ++.+.+||.......-.....|.+.++++++.|..+ +
T Consensus 2276 ~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~q-l 2350 (2439)
T KOG1064|consen 2276 SLWQAS-PKPYTSWQCHNKALSDFRFIG--S-LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQ-L 2350 (2439)
T ss_pred eecccC-CcceeccccCCccccceeeee--h-hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcce-E
Confidence 999987 555666677888888888865 3 6676653 579999997654332333388999999999999986 7
Q ss_pred EEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 318 LASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 318 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
|++|+.+|.|++||++. .++...++ . +. ... .+++|+..|.++||+++.-.
T Consensus 2351 lisggr~G~v~l~D~rq--------------rql~h~~~-----~----~~-~~~-~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2351 LISGGRKGEVCLFDIRQ--------------RQLRHTFQ-----A----LD-TRE-YFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred EEecCCcCcEEEeehHH--------------HHHHHHhh-----h----hh-hhh-eeeccCcccceEEEEccccc
Confidence 99999999999999986 22222222 1 44 334 68899999999999998753
No 270
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=1.4e-08 Score=91.43 Aligned_cols=208 Identities=17% Similarity=0.299 Sum_probs=133.5
Q ss_pred eEEEEEeecCCceeEEEEcCC-CCcEEEE-----EeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCC
Q 015484 106 VEIAQKIRVDGEVNRARCMPQ-KPNLVGT-----KTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKE 179 (406)
Q Consensus 106 ~~~~~~~~h~~~v~~i~~~p~-~~~~l~~-----~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 179 (406)
++.....-|...|+.+.++|. .+..+|+ ++.-+.|+||.+..... ..++..-.-....=..+.|++-|.
T Consensus 156 f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~-----~~~~a~ksFFkadkvqm~WN~~gt 230 (566)
T KOG2315|consen 156 FKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ-----HQPVANKSFFKADKVQMKWNKLGT 230 (566)
T ss_pred ccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc-----cchhhhccccccceeEEEeccCCc
Confidence 333333446788999999996 3445554 34556899999884221 111111111122233678998887
Q ss_pred CeEEEecCC-----------CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEE--EecCCcEEEEECC
Q 015484 180 GYLVSGSHD-----------NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGS--AGDDCQLMIWDLR 246 (406)
Q Consensus 180 ~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~--~~~dg~i~i~d~~ 246 (406)
.+|+.++.| .++.+.+++... +...+ ...++|.++.|+| +++-|++ |-.-..+.|||++
T Consensus 231 ~LLvLastdVDktn~SYYGEq~Lyll~t~g~s------~~V~L-~k~GPVhdv~W~~-s~~EF~VvyGfMPAkvtifnlr 302 (566)
T KOG2315|consen 231 ALLVLASTDVDKTNASYYGEQTLYLLATQGES------VSVPL-LKEGPVHDVTWSP-SGREFAVVYGFMPAKVTIFNLR 302 (566)
T ss_pred eEEEEEEEeecCCCccccccceEEEEEecCce------EEEec-CCCCCceEEEECC-CCCEEEEEEecccceEEEEcCC
Confidence 666655432 357777776211 11111 2368999999999 4555544 3456789999987
Q ss_pred CCcccccccccCCCeeEEEecCCCCcEEEEEeC---CCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeC
Q 015484 247 TNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS---DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSAD 323 (406)
Q Consensus 247 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~ 323 (406)
++.+..+ ..++-+++-|+|.|+ +++.++- -|.+-+||..+.+. +..+.. ..-+-+.|+|+|++ ++|+..
T Consensus 303 -~~~v~df--~egpRN~~~fnp~g~-ii~lAGFGNL~G~mEvwDv~n~K~-i~~~~a--~~tt~~eW~PdGe~-flTATT 374 (566)
T KOG2315|consen 303 -GKPVFDF--PEGPRNTAFFNPHGN-IILLAGFGNLPGDMEVWDVPNRKL-IAKFKA--ANTTVFEWSPDGEY-FLTATT 374 (566)
T ss_pred -CCEeEeC--CCCCccceEECCCCC-EEEEeecCCCCCceEEEeccchhh-cccccc--CCceEEEEcCCCcE-EEEEec
Confidence 4444444 467778899999999 5555554 47999999998554 666654 33456899999986 555544
Q ss_pred ------CCcEEEEeCCC
Q 015484 324 ------DRRLMVWDLNR 334 (406)
Q Consensus 324 ------dg~i~iwd~~~ 334 (406)
|+.++||++..
T Consensus 375 aPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 375 APRLRVDNGIKIWHYTG 391 (566)
T ss_pred cccEEecCCeEEEEecC
Confidence 78999999875
No 271
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.16 E-value=3.6e-11 Score=109.49 Aligned_cols=211 Identities=17% Similarity=0.324 Sum_probs=146.7
Q ss_pred CceeEEEEcCCC-CcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec----CCCe
Q 015484 116 GEVNRARCMPQK-PNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS----HDNK 190 (406)
Q Consensus 116 ~~v~~i~~~p~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~----~dg~ 190 (406)
-.+.|+++.-+. +.++++|..+|.|.+-....... .......+|...+++++|++-+.+.||+|- .|..
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd------Ss~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~ 130 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD------SSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSS 130 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCccc------ccceecccccccccccccccccHHHHHhhhhhhcccCC
Confidence 356666665543 36899999999999988876322 123445678899999999998776788773 3678
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~ 270 (406)
+.|||+.+.-....-.. ....+.....++++|.. +.+++.+|.....+.++|+|....... ...+..+..+..+|..
T Consensus 131 ~~Iwdi~s~ltvPke~~-~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~~~-svnTk~vqG~tVdp~~ 207 (783)
T KOG1008|consen 131 LKIWDINSLLTVPKESP-LFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDSVS-SVNTKYVQGITVDPFS 207 (783)
T ss_pred ccceecccccCCCcccc-ccccccccCcccccccc-Ccchhhcccccchhhhhhhhhhhhhhh-hhhhhhcccceecCCC
Confidence 99999988622111110 11111334566889984 788888999999999999995432211 1234456778888855
Q ss_pred CcEEEEEeCCCcEEEEe-CCCCCCCcEEecCCCC----CeEEEEEcCCCCCEEEEEeCC-CcEEEEeCCCCC
Q 015484 271 EWVLATASSDTTVALFD-MRKMTVPLHILSSHTE----EVFQVEWDPNHETVLASSADD-RRLMVWDLNRIG 336 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd-~~~~~~~~~~~~~h~~----~v~~i~~~p~~~~~l~s~~~d-g~i~iwd~~~~~ 336 (406)
.+++++-. ||.|.+|| .++.+.|+..+...+. .+..++|+|....++++.+.| ++|+++|+....
T Consensus 208 ~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~ 278 (783)
T KOG1008|consen 208 PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVG 278 (783)
T ss_pred CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccC
Confidence 54777655 89999999 7777776665554343 499999999887778887754 789999987643
No 272
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=1.2e-08 Score=91.83 Aligned_cols=242 Identities=14% Similarity=0.274 Sum_probs=149.4
Q ss_pred eeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC----------
Q 015484 118 VNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH---------- 187 (406)
Q Consensus 118 v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---------- 187 (406)
=+-+.|||.| .+|++-...| |.+|--.+ ......+. |. .|.-+.|||... +|+|=+.
T Consensus 213 etyv~wSP~G-TYL~t~Hk~G-I~lWGG~~--------f~r~~RF~-Hp-~Vq~idfSP~Ek-YLVT~s~~p~~~~~~d~ 279 (698)
T KOG2314|consen 213 ETYVRWSPKG-TYLVTFHKQG-IALWGGES--------FDRIQRFY-HP-GVQFIDFSPNEK-YLVTYSPEPIIVEEDDN 279 (698)
T ss_pred eeeEEecCCc-eEEEEEeccc-eeeecCcc--------HHHHHhcc-CC-CceeeecCCccc-eEEEecCCccccCcccC
Confidence 3568999999 6899988888 88997665 22233332 43 478899999888 9998643
Q ss_pred -CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEe
Q 015484 188 -DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSF 266 (406)
Q Consensus 188 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~ 266 (406)
...++|||+.+|...+.+.+. ......-.-..|+. +++++|.-.. .+|.||+.....++..-...-..|....|
T Consensus 280 e~~~l~IWDI~tG~lkrsF~~~---~~~~~~WP~frWS~-DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~Fsw 354 (698)
T KOG2314|consen 280 EGQQLIIWDIATGLLKRSFPVI---KSPYLKWPIFRWSH-DDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSW 354 (698)
T ss_pred CCceEEEEEccccchhcceecc---CCCccccceEEecc-CCceeEEecc-ceEEEEecCceeeecccccCCccccCccc
Confidence 257999999999776555432 22222233457886 6788866655 46888887654332211112234455555
Q ss_pred cCCCCcEEEE-----------------------------------------------E----------eCCCcEEEEeCC
Q 015484 267 NPYNEWVLAT-----------------------------------------------A----------SSDTTVALFDMR 289 (406)
Q Consensus 267 ~~~~~~~l~~-----------------------------------------------~----------~~dg~i~vwd~~ 289 (406)
+|.+. +||- - +.-..+.|+.++
T Consensus 355 sP~~~-llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrir 433 (698)
T KOG2314|consen 355 SPTSN-LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIR 433 (698)
T ss_pred CCCcc-eEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEee
Confidence 55443 3321 0 111134445555
Q ss_pred CCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeC--CCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEe
Q 015484 290 KMTVPLHILSSHTEEVFQVEWDPNHETVLASSAD--DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSW 367 (406)
Q Consensus 290 ~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 367 (406)
....|+..... +..|...+|.|.|..+.+..+. ..++.+|.+.... ..+.++..+.. ...+.+.|
T Consensus 434 eKdIpve~vel-ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~----------~~~~lVk~~dk--~~~N~vfw 500 (698)
T KOG2314|consen 434 EKDIPVEVVEL-KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI----------KKPSLVKELDK--KFANTVFW 500 (698)
T ss_pred ccCCCceeeec-chheeeeeeccCCCeEEEEEccccccceeEEEeecCC----------Cchhhhhhhcc--cccceEEE
Confidence 44444444432 5678899999999875444443 3568888887411 12345544443 45778999
Q ss_pred CCCCCcEEEEE--eCCCcEEEEeCCC
Q 015484 368 NKNDPWVISSV--ADDNTVQVWQMTD 391 (406)
Q Consensus 368 s~~~~~~l~s~--~~dg~i~iw~~~~ 391 (406)
+|.|+++++.+ |..|.+.++|.+-
T Consensus 501 sPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 501 SPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred cCCCcEEEEEEecccccceEEEecch
Confidence 99999644443 3478899999885
No 273
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=2.4e-10 Score=102.45 Aligned_cols=218 Identities=14% Similarity=0.183 Sum_probs=150.2
Q ss_pred CCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEE
Q 015484 104 PKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLV 183 (406)
Q Consensus 104 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 183 (406)
..+......+|...|+.+.--.+. +-+++++.|++|++|.+....... +...+..+++.|+.+|.++.|..+.+ +++
T Consensus 724 ~~irL~nf~GH~~~iRai~AidNE-NSFiSASkDKTVKLWSik~EgD~~-~tsaCQfTY~aHkk~i~~igfL~~lr-~i~ 800 (1034)
T KOG4190|consen 724 DHIRLCNFTGHQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEGDEI-GTSACQFTYQAHKKPIHDIGFLADLR-SIA 800 (1034)
T ss_pred ceeeeecccCcHHHhHHHHhcccc-cceeeccCCceEEEEEeccccCcc-ccceeeeEhhhccCcccceeeeeccc-eee
Confidence 345566677899999998876655 568899999999999998753322 23446788899999999999998776 665
Q ss_pred EecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCC-CCCEEEEE-ecCCcEEEEECCCCcccccc-----cc
Q 015484 184 SGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLK-NENLFGSA-GDDCQLMIWDLRTNQTQQRV-----KA 256 (406)
Q Consensus 184 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~-~~~~l~~~-~~dg~i~i~d~~~~~~~~~~-----~~ 256 (406)
++ ||-|.+||.-.+....++ ..-..| +.+..+..-|. +..++++| +...+|+++|.|..+....+ .+
T Consensus 801 Sc--D~giHlWDPFigr~Laq~---~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~ 874 (1034)
T KOG4190|consen 801 SC--DGGIHLWDPFIGRLLAQM---EDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPG 874 (1034)
T ss_pred ec--cCcceeecccccchhHhh---hcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCC
Confidence 54 789999997665332211 111112 22333333332 44555454 78889999999988765544 34
Q ss_pred cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEE-EeCCC
Q 015484 257 HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMV-WDLNR 334 (406)
Q Consensus 257 ~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~i-wd~~~ 334 (406)
....+++++..+.|+ .++++-..|.|.+.|.|++.. +............++ .|..+ .|+....|.++.+ |..-.
T Consensus 875 Pna~~R~iaVa~~GN-~lAa~LSnGci~~LDaR~G~v-INswrpmecdllqla-apsdq-~L~~saldHslaVnWhald 949 (1034)
T KOG4190|consen 875 PNALTRAIAVADKGN-KLAAALSNGCIAILDARNGKV-INSWRPMECDLLQLA-APSDQ-ALAQSALDHSLAVNWHALD 949 (1034)
T ss_pred CchheeEEEeccCcc-hhhHHhcCCcEEEEecCCCce-eccCCcccchhhhhc-CchhH-HHHhhcccceeEeeehhcC
Confidence 456789999999998 889999999999999999764 444444333343343 34443 5777777888888 86543
No 274
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=1.8e-08 Score=94.10 Aligned_cols=246 Identities=15% Similarity=0.202 Sum_probs=170.7
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCC-----------CeE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKE-----------GYL 182 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-----------~~l 182 (406)
|...-.++.|+|.| ++|.|+. ..|.|-|... .+.+..+..|...|+.+.|.|... -+|
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s--------~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lli 82 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRS--------LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLI 82 (1062)
T ss_pred CcccccccccCccc--eEEEecC-ceEEEEehhh--------hhhhhccccCccceeEEEeccCCCchhccCccccceeE
Confidence 34456788999988 6777664 4588888776 445777888999999999987421 157
Q ss_pred EEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCC---CCCEEEEEecCCcEEEEECCCCcccccccccCC
Q 015484 183 VSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLK---NENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEK 259 (406)
Q Consensus 183 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 259 (406)
+++...|.|.+||+...... ..+..+..++.+++|-+. ...++++......+.+|+..+|+..........
T Consensus 83 AsaD~~GrIil~d~~~~s~~------~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~ 156 (1062)
T KOG1912|consen 83 ASADISGRIILVDFVLASVI------NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE 156 (1062)
T ss_pred EeccccCcEEEEEehhhhhh------hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc
Confidence 88888999999999876432 344567889999999763 336777878888999999999998888776677
Q ss_pred CeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCC------cEEecCCCC----------------C---------eEEE
Q 015484 260 EVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVP------LHILSSHTE----------------E---------VFQV 308 (406)
Q Consensus 260 ~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~------~~~~~~h~~----------------~---------v~~i 308 (406)
...|+.+.|.....+..-+..|.+.+-+.-...++ .+.-..|.. . ...+
T Consensus 157 iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~f 236 (1062)
T KOG1912|consen 157 ILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQF 236 (1062)
T ss_pred ceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhh
Confidence 78889999987766777777787777765432221 122222221 0 1235
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCc-EEEEEeCCCcEEEE
Q 015484 309 EWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPW-VISSVADDNTVQVW 387 (406)
Q Consensus 309 ~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-~l~s~~~dg~i~iw 387 (406)
+|+|.-++.+. ...-..+.|+|++- ...+....-..+.+.-+.|-|+++. .|.+.-.||.+.||
T Consensus 237 af~p~~rn~lf-i~~prellv~dle~--------------~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 237 AFSPHWRNILF-ITFPRELLVFDLEY--------------ECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIR 301 (1062)
T ss_pred hcChhhhceEE-EEeccceEEEcchh--------------hceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEE
Confidence 67887766443 33466789999876 2333333333444556677776542 68888999999999
Q ss_pred eCCC
Q 015484 388 QMTD 391 (406)
Q Consensus 388 ~~~~ 391 (406)
--..
T Consensus 302 vrk~ 305 (1062)
T KOG1912|consen 302 VRKE 305 (1062)
T ss_pred Eeec
Confidence 6544
No 275
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.12 E-value=4.5e-07 Score=80.78 Aligned_cols=251 Identities=11% Similarity=0.056 Sum_probs=141.1
Q ss_pred EEEEEeecCCceeEEEEcCCCCcEEEEEe---------CCCeEEEEeCCCccccccCCCCCceeeeCC-------CCCee
Q 015484 107 EIAQKIRVDGEVNRARCMPQKPNLVGTKT---------SSCEVYVFDCAKQAEKQQDDCDPDLRLKGH-------DKEGY 170 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h-------~~~v~ 170 (406)
++...+.-...-..+ ++|+++.+.++.+ .+..|.+||..+... ...+.-. ...-.
T Consensus 38 ~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~--------~~~i~~p~~p~~~~~~~~~ 108 (352)
T TIGR02658 38 RVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP--------IADIELPEGPRFLVGTYPW 108 (352)
T ss_pred EEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE--------EeEEccCCCchhhccCccc
Confidence 344444433333344 9999977777777 688999999998433 3333321 12234
Q ss_pred EEEecCCCCCeEEEec-C-CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCC-
Q 015484 171 GLSWSPFKEGYLVSGS-H-DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT- 247 (406)
Q Consensus 171 ~l~~~~~~~~~l~s~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~- 247 (406)
.++++|+|+ +|+... . +..|.+.|+.+++....+.. .....-...+ ....+ +-+.||......+..
T Consensus 109 ~~~ls~dgk-~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-------p~~~~vy~t~--e~~~~-~~~~Dg~~~~v~~d~~ 177 (352)
T TIGR02658 109 MTSLTPDNK-TLLFYQFSPSPAVGVVDLEGKAFVRMMDV-------PDCYHIFPTA--NDTFF-MHCRDGSLAKVGYGTK 177 (352)
T ss_pred eEEECCCCC-EEEEecCCCCCEEEEEECCCCcEEEEEeC-------CCCcEEEEec--CCccE-EEeecCceEEEEecCC
Confidence 789999998 666554 3 78999999998754332211 1111111111 11111 233444444433322
Q ss_pred Ccc-cc---cccccCCCee-EEEecC-CCCcEEEEEeCCCcEEEEeCCCCC----CCcEEecC-------CCCCeEEEEE
Q 015484 248 NQT-QQ---RVKAHEKEVN-YLSFNP-YNEWVLATASSDTTVALFDMRKMT----VPLHILSS-------HTEEVFQVEW 310 (406)
Q Consensus 248 ~~~-~~---~~~~~~~~v~-~i~~~~-~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~-------h~~~v~~i~~ 310 (406)
++. .. .+.....++. .-.+.+ ++. .+.+... |.|.+.|+.... .+...+.. ..+.+.-+++
T Consensus 178 g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~-~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~ 255 (352)
T TIGR02658 178 GNPKIKPTEVFHPEDEYLINHPAYSNKSGR-LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAY 255 (352)
T ss_pred CceEEeeeeeecCCccccccCCceEcCCCc-EEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEE
Confidence 111 00 0111000000 003345 666 5555554 999999975432 12222211 2334455999
Q ss_pred cCCCCCEEEEEe---------CCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCC-cEEEEEeC
Q 015484 311 DPNHETVLASSA---------DDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDP-WVISSVAD 380 (406)
Q Consensus 311 ~p~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~~l~s~~~ 380 (406)
+|+++.+++... ..+.|.++|..+ .+.+....- ...+..++++|+++ .++++...
T Consensus 256 ~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t--------------~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~ 320 (352)
T TIGR02658 256 HRARDRIYLLADQRAKWTHKTASRFLFVVDAKT--------------GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTG 320 (352)
T ss_pred cCCCCEEEEEecCCccccccCCCCEEEEEECCC--------------CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCC
Confidence 999987555332 125799999877 234443332 24689999999999 65556557
Q ss_pred CCcEEEEeCCCccc
Q 015484 381 DNTVQVWQMTDSIY 394 (406)
Q Consensus 381 dg~i~iw~~~~~~~ 394 (406)
++.|.+.|+.++..
T Consensus 321 s~~VsViD~~t~k~ 334 (352)
T TIGR02658 321 DKTLYIFDAETGKE 334 (352)
T ss_pred CCcEEEEECcCCeE
Confidence 88999999998854
No 276
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.11 E-value=2.2e-07 Score=79.90 Aligned_cols=240 Identities=14% Similarity=0.125 Sum_probs=146.6
Q ss_pred CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC---CCeEEEEeCCCccCCceeeeeeeeec
Q 015484 137 SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH---DNKICLWDVSALAQDKVIDAMHVYEA 213 (406)
Q Consensus 137 dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~ 213 (406)
+.-|++|++.+.... .. ...+..+.+..+-|+|+|+++ +|.++-. +|.|..|.++.... .+..+.....
T Consensus 15 s~gI~v~~ld~~~g~----l~-~~~~v~~~~nptyl~~~~~~~-~LY~v~~~~~~ggvaay~iD~~~G--~Lt~ln~~~~ 86 (346)
T COG2706 15 SQGIYVFNLDTKTGE----LS-LLQLVAELGNPTYLAVNPDQR-HLYVVNEPGEEGGVAAYRIDPDDG--RLTFLNRQTL 86 (346)
T ss_pred CCceEEEEEeCcccc----cc-hhhhccccCCCceEEECCCCC-EEEEEEecCCcCcEEEEEEcCCCC--eEEEeecccc
Confidence 345999999854321 11 222334567788999999888 7777644 57888888775311 1222222222
Q ss_pred cCccEEEEEeeCCCCCEEEEE-ecCCcEEEEECCC-Cccccc--ccccCCC----------eeEEEecCCCCcEEEEEeC
Q 015484 214 HESVVEDVSWHLKNENLFGSA-GDDCQLMIWDLRT-NQTQQR--VKAHEKE----------VNYLSFNPYNEWVLATASS 279 (406)
Q Consensus 214 ~~~~i~~i~~~p~~~~~l~~~-~~dg~i~i~d~~~-~~~~~~--~~~~~~~----------v~~i~~~~~~~~~l~~~~~ 279 (406)
...+..-++++++ +++++++ ...|.|.++-++. |..... ...|... +.+..+.|+++ +|++..-
T Consensus 87 ~g~~p~yvsvd~~-g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~-~l~v~DL 164 (346)
T COG2706 87 PGSPPCYVSVDED-GRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR-YLVVPDL 164 (346)
T ss_pred CCCCCeEEEECCC-CCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC-EEEEeec
Confidence 3344477889984 5555444 5678999999876 332211 1223333 78899999999 5555543
Q ss_pred -CCcEEEEeCCCCCCC---cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEe
Q 015484 280 -DTTVALFDMRKMTVP---LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH 355 (406)
Q Consensus 280 -dg~i~vwd~~~~~~~---~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 355 (406)
.-.|.+|++..+... ...+ ........|.|+|+++...+.+-.+++|.+|.+................+ ..+
T Consensus 165 G~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP---~dF 240 (346)
T COG2706 165 GTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLP---EDF 240 (346)
T ss_pred CCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCc---ccc
Confidence 337999999865421 1112 33456799999999986555566799999999987422221111100000 011
Q ss_pred cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 356 GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 356 ~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
. .......|..+++|+++.+|--....|.++.+..
T Consensus 241 ~-g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 241 T-GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred C-CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 2 2345778899999996555544556777777654
No 277
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.07 E-value=1.2e-07 Score=95.63 Aligned_cols=265 Identities=18% Similarity=0.265 Sum_probs=162.0
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccc-------------c----------c--C-CC--------CCc
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEK-------------Q----------Q--D-DC--------DPD 159 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~-------------~----------~--~-~~--------~~~ 159 (406)
-.+.|.+++|+||+ .+||..+.+|++.+-...-.... + . + .. .|.
T Consensus 119 vd~GI~a~~WSPD~-Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~ 197 (928)
T PF04762_consen 119 VDSGILAASWSPDE-ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT 197 (928)
T ss_pred EcCcEEEEEECCCc-CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence 45789999999999 57888888888877643211000 0 0 0 00 111
Q ss_pred ------eeeeCCCCCeeEEEecCCCCCeEEEecC---C---CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCC
Q 015484 160 ------LRLKGHDKEGYGLSWSPFKEGYLVSGSH---D---NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKN 227 (406)
Q Consensus 160 ------~~~~~h~~~v~~l~~~~~~~~~l~s~~~---d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~ 227 (406)
..+. +...-..|+|..||. ++|+.+. . ..++||+-+ +... .....-.+--.+++|.| .
T Consensus 198 ~~~~d~~~~s-~dd~~~~ISWRGDG~-yFAVss~~~~~~~~R~iRVy~Re-G~L~------stSE~v~gLe~~l~WrP-s 267 (928)
T PF04762_consen 198 VPKVDEGKLS-WDDGRVRISWRGDGE-YFAVSSVEPETGSRRVIRVYSRE-GELQ------STSEPVDGLEGALSWRP-S 267 (928)
T ss_pred CCccccCccc-cCCCceEEEECCCCc-EEEEEEEEcCCCceeEEEEECCC-ceEE------eccccCCCccCCccCCC-C
Confidence 1122 344556899999999 8888764 3 478999865 2211 11111223345789999 6
Q ss_pred CCEEEEEec---CCcEEEEECCC---CcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCc-EEec-
Q 015484 228 ENLFGSAGD---DCQLMIWDLRT---NQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPL-HILS- 299 (406)
Q Consensus 228 ~~~l~~~~~---dg~i~i~d~~~---~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~- 299 (406)
++++|+... ...|.+|.-+. ++....+......|..++|++++. +||....|. |.+|-..+-.-.+ +.+.
T Consensus 268 G~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~~-vqLWt~~NYHWYLKqei~~ 345 (928)
T PF04762_consen 268 GNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSE-ILAVWLEDR-VQLWTRSNYHWYLKQEIRF 345 (928)
T ss_pred CCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCC-EEEEEecCC-ceEEEeeCCEEEEEEEEEc
Confidence 788877654 34577776332 222222234567899999999999 888877664 9999887644212 1222
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccc---------------------ccccccCCCCeeEEEecCC
Q 015484 300 SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ---------------------LELDAEDGPPELLFSHGGH 358 (406)
Q Consensus 300 ~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~h 358 (406)
.....+..+.|+|..+..|...+.+|.+..+++.-.-... +.+....-||.+....-..
T Consensus 346 ~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~ 425 (928)
T PF04762_consen 346 SSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELEL 425 (928)
T ss_pred cCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcC
Confidence 2233455699999988778888877887766653211000 0011111122222111224
Q ss_pred CCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 359 KAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 359 ~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
..+|.+++|++++. .+++-..||.|.+|.....
T Consensus 426 ~~~v~~vaf~~~~~-~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 426 PSPVNDVAFSPSNS-RFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred CCCcEEEEEeCCCC-eEEEEECCCCEEEEEecCC
Confidence 56899999999987 4788888999999996554
No 278
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.07 E-value=4.3e-09 Score=85.86 Aligned_cols=146 Identities=19% Similarity=0.214 Sum_probs=97.0
Q ss_pred EEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC-CCCCeeEEEecCCCCCeEEEecC-----CCeEEEEeCCCccCCc
Q 015484 130 LVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG-HDKEGYGLSWSPFKEGYLVSGSH-----DNKICLWDVSALAQDK 203 (406)
Q Consensus 130 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~ 203 (406)
-++++..||.+.+++.+..... ...... |.+. .+.+....+. ++.++.. -+..+.|+++..+.
T Consensus 103 ~V~~~~~dg~~~v~s~~~~~~~-------~~~i~~~~~~~-as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~t-- 171 (319)
T KOG4714|consen 103 RVCIGYADGSLAVFSTDKDLAL-------MSRIPSIHSGS-ASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIKT-- 171 (319)
T ss_pred ceEecCCCceEEEEechHHHhh-------hhhcccccccc-cccceeeccc-EEecCCcceEeeccceeeeccccccc--
Confidence 4899999999999998872111 111111 1111 1222333344 4444322 22344555543211
Q ss_pred eeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc-cccccccCCCeeEEEecCCCCcEEEEEeCCCc
Q 015484 204 VIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT-QQRVKAHEKEVNYLSFNPYNEWVLATASSDTT 282 (406)
Q Consensus 204 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~ 282 (406)
+ ..-......|.+++-+|...+++++|+.||.+.+||.|.... ...++.|+.++..+-|+|..+..|++++.||.
T Consensus 172 -~---~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs 247 (319)
T KOG4714|consen 172 -L---IPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS 247 (319)
T ss_pred -c---cccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc
Confidence 1 101112234999999998899999999999999999998754 34458899999999999998889999999999
Q ss_pred EEEEeCCC
Q 015484 283 VALFDMRK 290 (406)
Q Consensus 283 i~vwd~~~ 290 (406)
+..||..+
T Consensus 248 lw~wdas~ 255 (319)
T KOG4714|consen 248 LWHWDAST 255 (319)
T ss_pred EEEEcCCC
Confidence 99999874
No 279
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=6.4e-10 Score=94.15 Aligned_cols=154 Identities=16% Similarity=0.184 Sum_probs=114.2
Q ss_pred EEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCC----CCCcEEecCCCCCeEE
Q 015484 232 GSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKM----TVPLHILSSHTEEVFQ 307 (406)
Q Consensus 232 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~h~~~v~~ 307 (406)
++.+.+-.+-+-|+.++.. +.+. ..+.|.++.|.-.++ ++..|...|.|..+|+|.. ..+.+ ...|.+.|++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a~-rlyh~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCAQ-RLYHDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcceE-EEEcCcchhh
Confidence 4566677788999988753 3333 678899999998787 9999999999999999975 23333 3358899999
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEE--eCCCCCcEEEEEeCCCcEE
Q 015484 308 VEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFS--WNKNDPWVISSVADDNTVQ 385 (406)
Q Consensus 308 i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~--~s~~~~~~l~s~~~dg~i~ 385 (406)
+..-...+..|++.+.+|+|++||++.... ..-+..+.||...-.-+- ..+... +++++|.|...+
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~-----------~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~GdDcytR 371 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKC-----------KKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVGDDCYTR 371 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhc-----------ccceeeeecccccccccccccccccc-eEEEccCeeEEE
Confidence 987773334688889999999999987322 123667778865443333 344445 788899999999
Q ss_pred EEeCCCcccCCCcccc
Q 015484 386 VWQMTDSIYRDDDDFL 401 (406)
Q Consensus 386 iw~~~~~~~~~~~~~~ 401 (406)
||.+.++.+..+.++.
T Consensus 372 iWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 372 IWSLDSGHLLCTIPFP 387 (425)
T ss_pred EEecccCceeeccCCC
Confidence 9999998876665544
No 280
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.06 E-value=1.3e-07 Score=95.44 Aligned_cols=252 Identities=13% Similarity=0.241 Sum_probs=157.0
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
..+.|.++.|.++. ..++.+..+|.|.+........ .........-...|.+++|||++. .|+.+..+|++.+
T Consensus 74 ~~~~ivs~~yl~d~-~~l~~~~~~Gdi~~~~~~~~~~-----~~~~E~VG~vd~GI~a~~WSPD~E-lla~vT~~~~l~~ 146 (928)
T PF04762_consen 74 PNDKIVSFQYLADS-ESLCIALASGDIILVREDPDPD-----EDEIEIVGSVDSGILAASWSPDEE-LLALVTGEGNLLL 146 (928)
T ss_pred CCCcEEEEEeccCC-CcEEEEECCceEEEEEccCCCC-----CceeEEEEEEcCcEEEEEECCCcC-EEEEEeCCCEEEE
Confidence 34789999999988 4577788999999993322100 111222233457899999999999 9988888899888
Q ss_pred EeCCC-----------------------ccCCcee-------------eee------eeeeccCccEEEEEeeCCCCCEE
Q 015484 194 WDVSA-----------------------LAQDKVI-------------DAM------HVYEAHESVVEDVSWHLKNENLF 231 (406)
Q Consensus 194 wd~~~-----------------------~~~~~~~-------------~~~------~~~~~~~~~i~~i~~~p~~~~~l 231 (406)
..-.= |+...++ .+. ..+. ....-..|+|-. ++.+|
T Consensus 147 mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRG-DG~yF 224 (928)
T PF04762_consen 147 MTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRG-DGEYF 224 (928)
T ss_pred EeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECC-CCcEE
Confidence 65321 0000000 000 0011 233456788987 78888
Q ss_pred EEEec---C---CcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeC---CCcEEEEeCCCCCCCcEEe--cC
Q 015484 232 GSAGD---D---CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS---DTTVALFDMRKMTVPLHIL--SS 300 (406)
Q Consensus 232 ~~~~~---d---g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~--~~ 300 (406)
|+.+- . ..+++|+-. |....+-..-.+--.+++|.|.|. ++|+... ...|.+|.-.....--..+ ..
T Consensus 225 AVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~-lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~ 302 (928)
T PF04762_consen 225 AVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGN-LIASSQRLPDRHDVVFFERNGLRHGEFTLRFDP 302 (928)
T ss_pred EEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCC-EEEEEEEcCCCcEEEEEecCCcEeeeEecCCCC
Confidence 87764 2 579999954 654433333344445789999998 7877665 2356777644332211122 23
Q ss_pred CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEec-CCCCCeeeEEeCCCCCcEEEEEe
Q 015484 301 HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG-GHKAKISDFSWNKNDPWVISSVA 379 (406)
Q Consensus 301 h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~~l~s~~ 379 (406)
....|..+.|++++. +||..-.|. |.+|-..+..-. +...+. .....+..+.|+|..++.|...+
T Consensus 303 ~~~~v~~l~Wn~ds~-iLAv~~~~~-vqLWt~~NYHWY------------LKqei~~~~~~~~~~~~Wdpe~p~~L~v~t 368 (928)
T PF04762_consen 303 EEEKVIELAWNSDSE-ILAVWLEDR-VQLWTRSNYHWY------------LKQEIRFSSSESVNFVKWDPEKPLRLHVLT 368 (928)
T ss_pred CCceeeEEEECCCCC-EEEEEecCC-ceEEEeeCCEEE------------EEEEEEccCCCCCCceEECCCCCCEEEEEe
Confidence 456799999999997 677766554 999988773321 122221 12233555999998887677777
Q ss_pred CCCcEEEEeCC
Q 015484 380 DDNTVQVWQMT 390 (406)
Q Consensus 380 ~dg~i~iw~~~ 390 (406)
.+|.+..++..
T Consensus 369 ~~g~~~~~~~~ 379 (928)
T PF04762_consen 369 SNGQYEIYDFA 379 (928)
T ss_pred cCCcEEEEEEE
Confidence 76777655543
No 281
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.06 E-value=7.3e-07 Score=74.46 Aligned_cols=237 Identities=10% Similarity=0.108 Sum_probs=134.8
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCC---CCeeEEEecCCCCCeEEEecCCCeEEEEeCC
Q 015484 121 ARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHD---KEGYGLSWSPFKEGYLVSGSHDNKICLWDVS 197 (406)
Q Consensus 121 i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~ 197 (406)
++.+++| .+||. -.|..|.|-...+.-.. .+...+.+. -.=.-++|||++. +||.+...|+|++||+.
T Consensus 3 ~~~~~~G-k~lAi-~qd~~iEiRsa~Ddf~s------i~~kcqVpkD~~PQWRkl~WSpD~t-lLa~a~S~G~i~vfdl~ 73 (282)
T PF15492_consen 3 LALSSDG-KLLAI-LQDQCIEIRSAKDDFSS------IIGKCQVPKDPNPQWRKLAWSPDCT-LLAYAESTGTIRVFDLM 73 (282)
T ss_pred eeecCCC-cEEEE-EeccEEEEEeccCCchh------eeEEEecCCCCCchheEEEECCCCc-EEEEEcCCCeEEEEecc
Confidence 4566777 55554 46777777766653221 112222222 2345799999999 99999999999999987
Q ss_pred CccCCceeeeeeeeec-cCccEEEEEeeCCC-----CCEEEEEecCCcEEEEECCCC--c---ccccc---cccCCCeeE
Q 015484 198 ALAQDKVIDAMHVYEA-HESVVEDVSWHLKN-----ENLFGSAGDDCQLMIWDLRTN--Q---TQQRV---KAHEKEVNY 263 (406)
Q Consensus 198 ~~~~~~~~~~~~~~~~-~~~~i~~i~~~p~~-----~~~l~~~~~dg~i~i~d~~~~--~---~~~~~---~~~~~~v~~ 263 (406)
.... ..+.+...+.+ -..+|..+.|.+.. ...|++...+|.++-|-+-.+ + ....+ ..+...|++
T Consensus 74 g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~ 152 (282)
T PF15492_consen 74 GSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINS 152 (282)
T ss_pred ccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeE
Confidence 5322 22222121111 23567777775422 235667778888887765322 1 12222 224678999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEE-EEEeCCCcE------EEEeCCCCC
Q 015484 264 LSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVL-ASSADDRRL------MVWDLNRIG 336 (406)
Q Consensus 264 i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l-~s~~~dg~i------~iwd~~~~~ 336 (406)
+.++|..+ +|++|+.... .. . .-++....+++-..-.+.+++. ++...|+.. .+|.+-+
T Consensus 153 ~vy~p~h~-LLlVgG~~~~------~~--~---~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~-- 218 (282)
T PF15492_consen 153 AVYHPKHR-LLLVGGCEQN------QD--G---MSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS-- 218 (282)
T ss_pred EEEcCCCC-EEEEeccCCC------CC--c---cccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccc--
Confidence 99999888 6666654322 00 0 0112223334333333333322 222222221 2222221
Q ss_pred cccccccccCCCCeeEEEe-cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 337 DEQLELDAEDGPPELLFSH-GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
...+.. ......|..|..||+|. +||+...+|.|.+|++.+-...
T Consensus 219 -------------~~~fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 219 -------------FKFFSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred -------------eeeeeccccCCCceEEEEECCCCC-EEEEEEcCCeEEEEecCcchhh
Confidence 111222 22456799999999999 8999999999999999876543
No 282
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=4.2e-08 Score=90.95 Aligned_cols=243 Identities=12% Similarity=0.133 Sum_probs=160.3
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
.-+|++.|.-+.|+.+. ..|-+...+|.|.||-+-++. +-....-....+.|.+++|+.+|. .++....||.
T Consensus 67 LeGH~~sV~vvTWNe~~-QKLTtSDt~GlIiVWmlykgs------W~EEMiNnRnKSvV~SmsWn~dG~-kIcIvYeDGa 138 (1189)
T KOG2041|consen 67 LEGHNASVMVVTWNENN-QKLTTSDTSGLIIVWMLYKGS------WCEEMINNRNKSVVVSMSWNLDGT-KICIVYEDGA 138 (1189)
T ss_pred hccCcceEEEEEecccc-ccccccCCCceEEEEeeeccc------HHHHHhhCcCccEEEEEEEcCCCc-EEEEEEccCC
Confidence 34799999999999887 468888999999999998742 222222334556788999999998 9999999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccc-------c----cccccCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ-------Q----RVKAHEK 259 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~-------~----~~~~~~~ 259 (406)
|.+=.++..+. +. ..++ ......+.|++ +...+..+-..|.+.+||....-.. . .+.....
T Consensus 139 vIVGsvdGNRI---wg--KeLk--g~~l~hv~ws~-D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~ 210 (1189)
T KOG2041|consen 139 VIVGSVDGNRI---WG--KELK--GQLLAHVLWSE-DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPT 210 (1189)
T ss_pred EEEEeecccee---cc--hhcc--hheccceeecc-cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCc
Confidence 98877665321 10 1111 12344678998 5566667778899999997632110 0 1111223
Q ss_pred CeeEEEec--------CCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC------
Q 015484 260 EVNYLSFN--------PYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDR------ 325 (406)
Q Consensus 260 ~v~~i~~~--------~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg------ 325 (406)
.+..+.|. |+.+ .|+++...|.+.+..-.+...|+..-.+ -.+..+.|+++|. +|+.++.+.
T Consensus 211 kia~i~w~~g~~~~v~pdrP-~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~-vLAvcG~~~da~~~~ 286 (1189)
T KOG2041|consen 211 KIAEIEWNTGPYQPVPPDRP-RLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGA-VLAVCGNDSDADEPT 286 (1189)
T ss_pred cccceeeccCccccCCCCCC-EEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCCCc-EEEEccCcccccCcc
Confidence 35556664 4666 8999999999988766655565544443 6789999999996 788887653
Q ss_pred ---cEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 326 ---RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 326 ---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
.|.+|..- ...+.+++.....|++++|-..|- .++- ..|+.|.+=++.
T Consensus 287 d~n~v~Fysp~---------------G~i~gtlkvpg~~It~lsWEg~gL-riA~-AvdsfiyfanIR 337 (1189)
T KOG2041|consen 287 DSNKVHFYSPY---------------GHIVGTLKVPGSCITGLSWEGTGL-RIAI-AVDSFIYFANIR 337 (1189)
T ss_pred ccceEEEeccc---------------hhheEEEecCCceeeeeEEcCCce-EEEE-EecceEEEEeec
Confidence 23333321 133444455566799999987765 2333 336666655544
No 283
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.05 E-value=5.8e-09 Score=90.24 Aligned_cols=160 Identities=15% Similarity=0.162 Sum_probs=106.5
Q ss_pred EEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEE--EEEecCCcEEEEECCCC
Q 015484 171 GLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLF--GSAGDDCQLMIWDLRTN 248 (406)
Q Consensus 171 ~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l--~~~~~dg~i~i~d~~~~ 248 (406)
.+..++.++ +||.+..+....++++...... .+.+..+. -...-+.+.|...+...+ -..++...+.+|....+
T Consensus 67 ~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~--~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 67 LVLTSDSGR-LVAVATSSKQRAVFDYRENPKG--AKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred ccccCCCce-EEEEEeCCCceEEEEEecCCCc--ceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 445566666 7888777777777777654431 11122211 122233333333222322 23345556666665553
Q ss_pred cccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEE
Q 015484 249 QTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLM 328 (406)
Q Consensus 249 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~ 328 (406)
. ...+.+|-+.++.++|+|+++ +++++..|..|++-........-...-+|+.-|..++.-++. .|+++|.|++++
T Consensus 143 ~-~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~--~LlS~sGD~tlr 218 (390)
T KOG3914|consen 143 R-CEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY--LLLSGSGDKTLR 218 (390)
T ss_pred C-cchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc--eeeecCCCCcEE
Confidence 3 334457999999999999998 999999999999988776544223345799999999998875 589999999999
Q ss_pred EEeCCCCCcc
Q 015484 329 VWDLNRIGDE 338 (406)
Q Consensus 329 iwd~~~~~~~ 338 (406)
+||+.++...
T Consensus 219 ~Wd~~sgk~L 228 (390)
T KOG3914|consen 219 LWDITSGKLL 228 (390)
T ss_pred EEecccCCcc
Confidence 9999986543
No 284
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.05 E-value=5.7e-08 Score=79.80 Aligned_cols=195 Identities=11% Similarity=0.078 Sum_probs=127.7
Q ss_pred eEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCC
Q 015484 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKE 260 (406)
Q Consensus 181 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 260 (406)
+|+.|+..|...+|...+.... +.....+...|+-+.-..+...-+..++.|.++++.++..+..........-.
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h-----~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~ 160 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGH-----LYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLT 160 (344)
T ss_pred EEEeccccceeeeecccCcccc-----eeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccc
Confidence 7999999999999998864321 12222232222211111112233446788888888888755433333222233
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEE--ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcc
Q 015484 261 VNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHI--LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE 338 (406)
Q Consensus 261 v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 338 (406)
+++++++++++ ++++.+....|..|.+......+.. .......-.+..|+.... .+|++.+||++.|||++..+.+
T Consensus 161 ~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 161 QNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eeeeEEcCCCc-eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc-eEEEEecCCcEEEEEecccccc
Confidence 88999999999 7888888889999998765443322 233344567788998886 6999999999999999986543
Q ss_pred cccccccCCCCeeEEEecCCCCCeeeEEeCCCCCc--EEEEEeCCCcEEEEeCCCc
Q 015484 339 QLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPW--VISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~--~l~s~~~dg~i~iw~~~~~ 392 (406)
... ...+...|.+.+..+.|++-|.. ++++ -.-+.+++-|+.+.
T Consensus 239 m~~---------~sstrp~hnGa~R~c~Fsl~g~lDLLf~s-Ehfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 239 MAE---------ISSTRPHHNGAFRVCRFSLYGLLDLLFIS-EHFSRVHVVDTRNY 284 (344)
T ss_pred hhh---------hcccCCCCCCceEEEEecCCCcceEEEEe-cCcceEEEEEcccC
Confidence 321 11223458899999999987653 4444 34567888888776
No 285
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.04 E-value=1.4e-07 Score=84.16 Aligned_cols=245 Identities=13% Similarity=0.235 Sum_probs=150.6
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCC---------------eEEEEeCCCccccccCCCCCceeeeCCCCC--ee-EE
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSC---------------EVYVFDCAKQAEKQQDDCDPDLRLKGHDKE--GY-GL 172 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg---------------~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~--v~-~l 172 (406)
.+.|+ .|.-+.|+|.+ .+|.+-+..+ .+.+||+..+.. +..+.....+ .+ -+
T Consensus 68 ~~~~~-~V~~~~fSP~~-kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~i--------v~sf~~~~q~~~~Wp~~ 137 (561)
T COG5354 68 RFRHP-DVKYLDFSPNE-KYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMI--------VFSFNGISQPYLGWPVL 137 (561)
T ss_pred eeecC-CceecccCccc-ceeeeeccCCccChhhccCCccccCceeEEeccCcee--------EeeccccCCccccccee
Confidence 44453 47778888877 5777765433 489999988533 3444444444 44 67
Q ss_pred EecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCC-CCCEEEE-----EecCCcEEEEECC
Q 015484 173 SWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLK-NENLFGS-----AGDDCQLMIWDLR 246 (406)
Q Consensus 173 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~-~~~~l~~-----~~~dg~i~i~d~~ 246 (406)
.|+-++. ++|-. ....+.++++ +.... ..+...+. ...|....|+|. +...|+. .+..+.+++|.+.
T Consensus 138 k~s~~D~-y~ARv-v~~sl~i~e~-t~n~~--~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp 210 (561)
T COG5354 138 KFSIDDK-YVARV-VGSSLYIHEI-TDNIE--EHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIP 210 (561)
T ss_pred eeeecch-hhhhh-ccCeEEEEec-CCccc--cCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEcc
Confidence 8888776 65554 3457999997 32211 11112221 356888888885 2333333 3578899999998
Q ss_pred CCcccccccccCCCeeEEEecCCCCcEEEEEe----------CCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCC
Q 015484 247 TNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS----------SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHET 316 (406)
Q Consensus 247 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~ 316 (406)
.+..+.+..-....-..+.|++.|.++++-.- ....+++++++....++.. .-.++|...+|.|.++.
T Consensus 211 ~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~--~~~~pVhdf~W~p~S~~ 288 (561)
T COG5354 211 KNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK--DLKDPVHDFTWEPLSSR 288 (561)
T ss_pred CCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec--cccccceeeeecccCCc
Confidence 66655444333444457889999985443321 1246889998865554433 55789999999999876
Q ss_pred EEE-EEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCC---CcEEEEeCCCc
Q 015484 317 VLA-SSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADD---NTVQVWQMTDS 392 (406)
Q Consensus 317 ~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~d---g~i~iw~~~~~ 392 (406)
+.+ +|-.+-.+.++|++. .+.+.. ....=..+.|+|.++|+|+ ++.| |.+-+|++.+.
T Consensus 289 F~vi~g~~pa~~s~~~lr~---------------Nl~~~~--Pe~~rNT~~fsp~~r~il~-agF~nl~gni~i~~~~~r 350 (561)
T COG5354 289 FAVISGYMPASVSVFDLRG---------------NLRFYF--PEQKRNTIFFSPHERYILF-AGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred eeEEecccccceeeccccc---------------ceEEec--CCcccccccccCcccEEEE-ecCCccccceEEeccCCc
Confidence 433 335788899999986 333322 2333455667777775443 3333 45666666554
No 286
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.04 E-value=6.8e-07 Score=79.36 Aligned_cols=149 Identities=14% Similarity=0.098 Sum_probs=112.3
Q ss_pred EcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC-eEEEEeCCCccC
Q 015484 123 CMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN-KICLWDVSALAQ 201 (406)
Q Consensus 123 ~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~ 201 (406)
|++....++|..+ .|...|.+.... ...-.+|...|.-..+..+++ -++.|..|| .+-++|..++..
T Consensus 327 fa~~~Gd~ia~VS-RGkaFi~~~~~~----------~~iqv~~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~e~ 394 (668)
T COG4946 327 FAVVNGDYIALVS-RGKAFIMRPWDG----------YSIQVGKKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGGEV 394 (668)
T ss_pred hccCCCcEEEEEe-cCcEEEECCCCC----------eeEEcCCCCceEEEEEccCCc-ceEEeccCCceEEEEecCCceE
Confidence 4444446777766 466777776552 112235777788888887777 889999999 899999988642
Q ss_pred CceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCC
Q 015484 202 DKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT 281 (406)
Q Consensus 202 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg 281 (406)
..+...-+.|.++..+| +++.++++.....|.+.|+.+++....-+...+-|+.+.|||+++ ++|-+--+|
T Consensus 395 -------kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr-~iAYafP~g 465 (668)
T COG4946 395 -------KRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSR-WIAYAFPEG 465 (668)
T ss_pred -------EEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCce-eEEEecCcc
Confidence 33444567899999998 788888889999999999999986544455678899999999999 777766555
Q ss_pred ----cEEEEeCCCCC
Q 015484 282 ----TVALFDMRKMT 292 (406)
Q Consensus 282 ----~i~vwd~~~~~ 292 (406)
.|+++|+...+
T Consensus 466 y~tq~Iklydm~~~K 480 (668)
T COG4946 466 YYTQSIKLYDMDGGK 480 (668)
T ss_pred eeeeeEEEEecCCCe
Confidence 79999998754
No 287
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.03 E-value=3.2e-07 Score=85.01 Aligned_cols=197 Identities=7% Similarity=0.013 Sum_probs=116.7
Q ss_pred CeeEEEecCCCCCeEEEecC---CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC--CcEEE
Q 015484 168 EGYGLSWSPFKEGYLVSGSH---DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD--CQLMI 242 (406)
Q Consensus 168 ~v~~l~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d--g~i~i 242 (406)
......|+|+|+..++..+. +..|.++|+.+++.. .+....+......|+|++..++++.+.+ ..|.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~-------~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 261 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE-------KIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYL 261 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE-------EEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEE
Confidence 67789999999843554333 356888898775431 1122344556678999655666665544 46888
Q ss_pred EECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCC--cEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEE
Q 015484 243 WDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT--TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLAS 320 (406)
Q Consensus 243 ~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s 320 (406)
+|+.+++. ..+..+........|+|+|+.++++....+ .|.+.|+..+.. ..+...... ...|+|+|+.++++
T Consensus 262 ~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~--~rlt~~g~~--~~~~SPDG~~Ia~~ 336 (419)
T PRK04043 262 YDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV--EQVVFHGKN--NSSVSTYKNYIVYS 336 (419)
T ss_pred EECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe--EeCccCCCc--CceECCCCCEEEEE
Confidence 88877753 334333333345689999995555554444 677788876543 222221111 24899999975555
Q ss_pred EeCC--------CcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCc--EEEEeCC
Q 015484 321 SADD--------RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNT--VQVWQMT 390 (406)
Q Consensus 321 ~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~--i~iw~~~ 390 (406)
.... ..|.+.|+..... ..+.. . .......|+|+|+.++.+....+. +.+.++.
T Consensus 337 ~~~~~~~~~~~~~~I~v~d~~~g~~------------~~LT~---~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 337 SRETNNEFGKNTFNLYLISTNSDYI------------RRLTA---N-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred EcCCCcccCCCCcEEEEEECCCCCe------------EECCC---C-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 5443 3577777765221 11111 1 123358899999965555544333 5566665
Q ss_pred Cc
Q 015484 391 DS 392 (406)
Q Consensus 391 ~~ 392 (406)
..
T Consensus 401 g~ 402 (419)
T PRK04043 401 YN 402 (419)
T ss_pred CC
Confidence 54
No 288
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=8.7e-10 Score=98.92 Aligned_cols=215 Identities=17% Similarity=0.258 Sum_probs=142.2
Q ss_pred ceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccC-CceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC
Q 015484 159 DLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQ-DKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD 237 (406)
Q Consensus 159 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d 237 (406)
...+.+|+..|..++--.+.+ .+++++.|.+|++|.++.... ...-.+..++..|+.+|.++.|-. +.+.+ ++.|
T Consensus 728 L~nf~GH~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i--~ScD 803 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSI--ASCD 803 (1034)
T ss_pred eecccCcHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-cccee--eecc
Confidence 456778999998887655444 899999999999999976432 223345677889999999999986 45555 4668
Q ss_pred CcEEEEECCCCcccccc--cccCCCeeEEEecC--CCCcEEEEEeCCCcEEEEeCCCCCC--CcEEe--cCCCCCeEEEE
Q 015484 238 CQLMIWDLRTNQTQQRV--KAHEKEVNYLSFNP--YNEWVLATASSDTTVALFDMRKMTV--PLHIL--SSHTEEVFQVE 309 (406)
Q Consensus 238 g~i~i~d~~~~~~~~~~--~~~~~~v~~i~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~--~~h~~~v~~i~ 309 (406)
|.|++||.--++.+..+ ....+.+..+..-| +..-+++.++...+|+++|.|..+- ..+.. .+....+.+++
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 99999998877776544 11223333333333 3342344447788999999997653 12222 34456789999
Q ss_pred EcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEE-Ee
Q 015484 310 WDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQV-WQ 388 (406)
Q Consensus 310 ~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~i-w~ 388 (406)
..|.|+. ++++-..|+|.+.|.+++. .+.....-......++ .|..+ .++....|.++.+ |.
T Consensus 884 Va~~GN~-lAa~LSnGci~~LDaR~G~--------------vINswrpmecdllqla-apsdq-~L~~saldHslaVnWh 946 (1034)
T KOG4190|consen 884 VADKGNK-LAAALSNGCIAILDARNGK--------------VINSWRPMECDLLQLA-APSDQ-ALAQSALDHSLAVNWH 946 (1034)
T ss_pred eccCcch-hhHHhcCCcEEEEecCCCc--------------eeccCCcccchhhhhc-CchhH-HHHhhcccceeEeeeh
Confidence 9999985 8888899999999998833 2222222121222222 23344 4666666777777 77
Q ss_pred CCCccc
Q 015484 389 MTDSIY 394 (406)
Q Consensus 389 ~~~~~~ 394 (406)
..+++.
T Consensus 947 aldgim 952 (1034)
T KOG4190|consen 947 ALDGIM 952 (1034)
T ss_pred hcCCee
Confidence 766654
No 289
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=3.7e-07 Score=84.60 Aligned_cols=196 Identities=9% Similarity=0.056 Sum_probs=115.7
Q ss_pred CceeEEEEcCCCCcEEEEEeC---CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC--Ce
Q 015484 116 GEVNRARCMPQKPNLVGTKTS---SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD--NK 190 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d--g~ 190 (406)
+.+..-.|+|++..+++..+. ...|+++|+.+... ..+....+......|+|+|+.++++.+.+ ..
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~---------~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~ 258 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK---------EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPD 258 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE---------EEEecCCCcEEeeEECCCCCEEEEEEccCCCcE
Confidence 467789999999654554333 35688899876322 22333445566788999998555555544 45
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC--cEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC--QLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
|.++|+..+.. ..+..+........|+|++..++++....| .|.++|+.+++..+.... ... ...|+|
T Consensus 259 Iy~~dl~~g~~-------~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SP 328 (419)
T PRK04043 259 IYLYDTNTKTL-------TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVST 328 (419)
T ss_pred EEEEECCCCcE-------EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECC
Confidence 77777766432 112222222334579996555655554444 577888887665332221 111 248999
Q ss_pred CCCcEEEEEeCC--------CcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCc--EEEEeCC
Q 015484 269 YNEWVLATASSD--------TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRR--LMVWDLN 333 (406)
Q Consensus 269 ~~~~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~--i~iwd~~ 333 (406)
+|+.++++.... ..|.+.|+..+. ...+... .......|+|+|+.++.+....+. +.+.++.
T Consensus 329 DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~--~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 329 YKNYIVYSSRETNNEFGKNTFNLYLISTNSDY--IRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred CCCEEEEEEcCCCcccCCCCcEEEEEECCCCC--eEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 999555554433 368888887654 3444433 233458899999865555544444 4444443
No 290
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.01 E-value=2.1e-06 Score=74.19 Aligned_cols=224 Identities=13% Similarity=0.073 Sum_probs=141.2
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCc
Q 015484 120 RARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSAL 199 (406)
Q Consensus 120 ~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~ 199 (406)
++.|.+....++++-...+.|+.|+...... ..+.... ..++++...+. .|+.+...+ +.++|+.++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~---------~~~~~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g 70 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV---------EVIDLPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTG 70 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE---------EEEESSS--EEEEEEECTTS-EEEEEETTC-EEEEETTTT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE---------EEEecCC--CceEEEEccCC-EEEEEEcCc-eEEEecCCC
Confidence 5688885547888888899999999987421 1122222 66778873333 555565544 555688775
Q ss_pred cCCceeeeeeeee--c-cCccEEEEEeeCCCCCEEEEEecC--------CcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 200 AQDKVIDAMHVYE--A-HESVVEDVSWHLKNENLFGSAGDD--------CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 200 ~~~~~~~~~~~~~--~-~~~~i~~i~~~p~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
+. ..+.... . .....+++++.| ++++.++.... |.|..++.. ++. ..+...-...+.|+|+|
T Consensus 71 ~~----~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~~~~~~~~pNGi~~s~ 143 (246)
T PF08450_consen 71 KV----TVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TVVADGLGFPNGIAFSP 143 (246)
T ss_dssp EE----EEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EEEEEEESSEEEEEEET
T ss_pred cE----EEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeE-EEEecCcccccceEECC
Confidence 32 2222221 1 345789999999 56677665533 567777776 443 22323345678999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCc------EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccc
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPL------HILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLEL 342 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~------~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 342 (406)
+++.++++-+..+.|..|++......+ ..+....+..-.+++..+|+ +.++....+.|.+++...
T Consensus 144 dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~G-------- 214 (246)
T PF08450_consen 144 DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPDG-------- 214 (246)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETTS--------
T ss_pred cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCCc--------
Confidence 999566677778899999986433211 12222223478899999996 677777889999999763
Q ss_pred cccCCCCeeEEEecCCCCCeeeEEe-CCCCCcEEEEEe
Q 015484 343 DAEDGPPELLFSHGGHKAKISDFSW-NKNDPWVISSVA 379 (406)
Q Consensus 343 ~~~~~~~~~~~~~~~h~~~v~~~~~-s~~~~~~l~s~~ 379 (406)
+++....-....+++++| -++...+++|.+
T Consensus 215 -------~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 215 -------KLLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp -------CEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred -------cEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 334433333457999999 456565666653
No 291
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.00 E-value=4e-09 Score=88.21 Aligned_cols=223 Identities=14% Similarity=0.252 Sum_probs=152.6
Q ss_pred CCeEEEEEeecCCceeEEEEcCC-CCcEEEEEeCCCeEEEEeCCCcccccc-------------------------C---
Q 015484 104 PKVEIAQKIRVDGEVNRARCMPQ-KPNLVGTKTSSCEVYVFDCAKQAEKQQ-------------------------D--- 154 (406)
Q Consensus 104 ~~~~~~~~~~h~~~v~~i~~~p~-~~~~l~~~~~dg~i~iw~~~~~~~~~~-------------------------~--- 154 (406)
+.|...+...-...|+.|.|..+ +...++..+.|.+|++|.+.....+.. +
T Consensus 74 ~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls 153 (460)
T COG5170 74 LEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLS 153 (460)
T ss_pred cchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhccccc
Confidence 44555566666788999999864 344566678899999999876422110 0
Q ss_pred ------CCCCceee-eCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccC-----ccEEEEE
Q 015484 155 ------DCDPDLRL-KGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHE-----SVVEDVS 222 (406)
Q Consensus 155 ------~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-----~~i~~i~ 222 (406)
...|...+ ..|.-.|.++.|+.+.. .++++ .|-.|.+|+++.....-.+ ...+.|. .-|++..
T Consensus 154 ~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e-t~lSa-DdLrINLWnl~i~D~sFnI---VDiKP~nmeeLteVItSae 228 (460)
T COG5170 154 EHDEIIAAKPCRVYANAHPYHINSISFNSDKE-TLLSA-DDLRINLWNLEIIDGSFNI---VDIKPHNMEELTEVITSAE 228 (460)
T ss_pred ccceEEEeccceeccccceeEeeeeeecCchh-eeeec-cceeeeeccccccCCceEE---EeccCccHHHHHHHHhhcc
Confidence 01111112 35667788999998877 77776 5788999998765432221 2222332 4588899
Q ss_pred eeCCCCCEEEEEecCCcEEEEECCCCccc----cc------------ccccCCCeeEEEecCCCCcEEEEEeCCCcEEEE
Q 015484 223 WHLKNENLFGSAGDDCQLMIWDLRTNQTQ----QR------------VKAHEKEVNYLSFNPYNEWVLATASSDTTVALF 286 (406)
Q Consensus 223 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~----~~------------~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vw 286 (406)
|+|.....|.-.+..|.|++-|+|+.... .. +..-.+.|..+.|+++|+ ++++-+. -++++|
T Consensus 229 Fhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngr-yIlsRdy-ltvkiw 306 (460)
T COG5170 229 FHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGR-YILSRDY-LTVKIW 306 (460)
T ss_pred cCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCc-EEEEecc-ceEEEE
Confidence 99988888888899999999999954321 11 122335678899999998 6665543 589999
Q ss_pred eCCCCCCCcEEecCCCC------------Ce---EEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 287 DMRKMTVPLHILSSHTE------------EV---FQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 287 d~~~~~~~~~~~~~h~~------------~v---~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
|.+..+.|+.++..|.. .| ..+.|+.+... +++|+..+..-||-..+
T Consensus 307 Dvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~-v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 307 DVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKH-VLSGSYSNNFGIYPTDS 368 (460)
T ss_pred ecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccc-ccccccccceeeecccc
Confidence 99998888888865542 22 35788888875 77888888877776443
No 292
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=9.9e-09 Score=90.02 Aligned_cols=228 Identities=14% Similarity=0.151 Sum_probs=153.9
Q ss_pred CCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec-CCcEEEE
Q 015484 165 HDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD-DCQLMIW 243 (406)
Q Consensus 165 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-dg~i~i~ 243 (406)
|...|+.+.-.. .. ++.+++.||.++.|--.... ....+..+..|-..|.+++.+- ++.++++++. |..++++
T Consensus 8 hrd~i~hv~~tk-a~-fiiqASlDGh~KFWkKs~is---GvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 8 HRDVITHVFPTK-AK-FIIQASLDGHKKFWKKSRIS---GVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred ccceeeeEeeeh-hh-eEEeeecchhhhhcCCCCcc---ceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEE
Confidence 667777665543 33 89999999999999754421 1233455667888888888885 7888888787 9999999
Q ss_pred ECCCCcccccccc--cCCCeeEEEecCCCC-cEEEE-EeCCCcEEEEeCCCCCCC-cEEecCCCCCeEEEEEcCCCCCEE
Q 015484 244 DLRTNQTQQRVKA--HEKEVNYLSFNPYNE-WVLAT-ASSDTTVALFDMRKMTVP-LHILSSHTEEVFQVEWDPNHETVL 318 (406)
Q Consensus 244 d~~~~~~~~~~~~--~~~~v~~i~~~~~~~-~~l~~-~~~dg~i~vwd~~~~~~~-~~~~~~h~~~v~~i~~~p~~~~~l 318 (406)
|+..-..+.-++. ..+.+. ...+|... ..+++ .-.+|.+.++|-+...++ ...-..|..+|..+.++|.+.. +
T Consensus 82 DvEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds-~ 159 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS-A 159 (558)
T ss_pred EeeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc-e
Confidence 9987655433321 112221 12222211 13333 345789999999876643 4455679999999999999984 8
Q ss_pred EEEeCCCcEEEEeCCC-CCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCCC
Q 015484 319 ASSADDRRLMVWDLNR-IGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDD 397 (406)
Q Consensus 319 ~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 397 (406)
++....|.|.-|.... ...+......+.....-++.+........++.|+|++. .+.+-+.|..|+++.+.++.+..+
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~-qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA-QISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccC-cccccCcccEEEEEEeccchhhhh
Confidence 8888899999999873 11111111111111122333344566789999999999 688889999999999999987666
Q ss_pred cccc
Q 015484 398 DDFL 401 (406)
Q Consensus 398 ~~~~ 401 (406)
-++.
T Consensus 239 iDE~ 242 (558)
T KOG0882|consen 239 IDEV 242 (558)
T ss_pred hhcc
Confidence 5443
No 293
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.97 E-value=1.5e-08 Score=87.68 Aligned_cols=159 Identities=19% Similarity=0.203 Sum_probs=105.7
Q ss_pred EEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc---cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC-CC
Q 015484 219 EDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV---KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT-VP 294 (406)
Q Consensus 219 ~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~ 294 (406)
..+..++ ++.++|++..+....+++.+.......+ ..-...-+++.+..... ....+...|.++-+|+-+.. .+
T Consensus 66 ~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~-sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 66 ALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDT-SVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccc-eEEEEeecCCceeeeeecccccC
Confidence 3344555 7788888888877777777654431111 11122234455544444 34444444444444443311 23
Q ss_pred cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcE
Q 015484 295 LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWV 374 (406)
Q Consensus 295 ~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~ 374 (406)
...+-+|-+.++.++|+|+++ +|+++..|..|+|-.+.... ..-.-.-||...|..++.-++. .
T Consensus 144 ~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f-------------~IesfclGH~eFVS~isl~~~~--~ 207 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATF-------------VIESFCLGHKEFVSTISLTDNY--L 207 (390)
T ss_pred cchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCccc-------------chhhhccccHhheeeeeeccCc--e
Confidence 455678999999999999997 69999999999998876511 1112235799999999999875 4
Q ss_pred EEEEeCCCcEEEEeCCCcccC
Q 015484 375 ISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 375 l~s~~~dg~i~iw~~~~~~~~ 395 (406)
|+|+|.|++|++||+.++...
T Consensus 208 LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 208 LLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred eeecCCCCcEEEEecccCCcc
Confidence 889999999999999998765
No 294
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.95 E-value=7.9e-07 Score=74.25 Aligned_cols=204 Identities=15% Similarity=0.172 Sum_probs=113.9
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC-CCCCeeEEEecCCC-----CCeEEEecCCCe
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG-HDKEGYGLSWSPFK-----EGYLVSGSHDNK 190 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~-----~~~l~s~~~dg~ 190 (406)
+=+.++|+|++ .+||.+...|+|++||+....... ..+.....+ -...|.++.|.+.. ...|+.-...|.
T Consensus 45 QWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~lf~---I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~ 120 (282)
T PF15492_consen 45 QWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSELFV---IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQ 120 (282)
T ss_pred hheEEEECCCC-cEEEEEcCCCeEEEEecccceeEE---cCcccccCCccccceeeeEeeccccccccceeEEEEeccce
Confidence 45678999999 689999999999999998633211 112121211 23566777776543 124667778899
Q ss_pred EEEEeCCCcc--CCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 191 ICLWDVSALA--QDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 191 i~iwd~~~~~--~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
++-|-+..+. .-...........+...|+++.++|. .++|++||.... +.+. -++....+++-..-.
T Consensus 121 L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~-h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~ 189 (282)
T PF15492_consen 121 LRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK-HRLLLVGGCEQN------QDGM----SKASSCGLTAWRILS 189 (282)
T ss_pred eeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC-CCEEEEeccCCC------CCcc----ccccccCceEEEEcC
Confidence 9888774322 11111111111234678999999994 456655554221 1100 111222333333322
Q ss_pred CCCcEE-EEEeCCCc------EEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCc
Q 015484 269 YNEWVL-ATASSDTT------VALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGD 337 (406)
Q Consensus 269 ~~~~~l-~~~~~dg~------i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 337 (406)
+.+++. ++...|+. ..+|.+-+... ..........|..|..+|+|. +||+...+|.|.+|++.+...
T Consensus 190 ~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~-fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 190 DSPYYKQVTSSEDDITASSKRRGLLRIPSFKF-FSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred CCCcEEEccccCccccccccccceeeccceee-eeccccCCCceEEEEECCCCC-EEEEEEcCCeEEEEecCcchh
Confidence 222222 22222221 12332221110 011122356799999999997 799999999999999987443
No 295
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.93 E-value=4.3e-07 Score=93.39 Aligned_cols=215 Identities=11% Similarity=0.122 Sum_probs=133.4
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc-CCCCCceeeeCC-------CCCeeEEEecCCCCCeEEEecCC
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ-DDCDPDLRLKGH-------DKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~h-------~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
....|++.+++..++++-...+.|+++|..+...... +.........+. -..-.+++++|++..++++.+.+
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 3577888887744455555567899999866322110 000000000000 01235799999555377777888
Q ss_pred CeEEEEeCCCccCCceeee---eeeeec------cCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccc-------
Q 015484 189 NKICLWDVSALAQDKVIDA---MHVYEA------HESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ------- 252 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~---~~~~~~------~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~------- 252 (406)
+.|++||..++... .+.. .....+ .-.....|+++|+++.++++-+.++.|++||+.++....
T Consensus 705 ~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~ 783 (1057)
T PLN02919 705 HQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT 783 (1057)
T ss_pred CeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc
Confidence 99999998765321 0000 000000 112456799999655577788888999999998754211
Q ss_pred ------cccc--------cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC--------------CCCC
Q 015484 253 ------RVKA--------HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS--------------HTEE 304 (406)
Q Consensus 253 ------~~~~--------~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--------------h~~~ 304 (406)
.+.. .-.....++++++|. ++++-+.++.|++||..+.. +..+.+ .-..
T Consensus 784 ~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~--v~tiaG~G~~G~~dG~~~~a~l~~ 860 (1057)
T PLN02919 784 FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKR--VTTLAGTGKAGFKDGKALKAQLSE 860 (1057)
T ss_pred cCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCe--EEEEeccCCcCCCCCcccccccCC
Confidence 0000 011235789999998 88888889999999987643 222211 1235
Q ss_pred eEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCC
Q 015484 305 VFQVEWDPNHETVLASSADDRRLMVWDLNRIG 336 (406)
Q Consensus 305 v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 336 (406)
...|+++++|+ ++++-+.++.|++||+.+..
T Consensus 861 P~GIavd~dG~-lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 861 PAGLALGENGR-LFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred ceEEEEeCCCC-EEEEECCCCEEEEEECCCCc
Confidence 78899999996 78888899999999997743
No 296
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.93 E-value=7e-07 Score=79.26 Aligned_cols=193 Identities=15% Similarity=0.166 Sum_probs=126.4
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC---CCCCeeEEE-ecCCCCCeEEEecCCCeEEEEeCCCccC
Q 015484 126 QKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG---HDKEGYGLS-WSPFKEGYLVSGSHDNKICLWDVSALAQ 201 (406)
Q Consensus 126 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~-~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 201 (406)
+|+.++.. ..|.|++||..+.......-..|+..-.. .-.+..-+. |++....+++..|. |...+.+...+-
T Consensus 277 DGkrIvFq--~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~- 352 (668)
T COG4946 277 DGKRIVFQ--NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGY- 352 (668)
T ss_pred CCcEEEEe--cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCe-
Confidence 56555554 45669999988754322111101110000 001111121 44433338888865 777777765542
Q ss_pred CceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC-cEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCC
Q 015484 202 DKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC-QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD 280 (406)
Q Consensus 202 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d 280 (406)
....++...|.-..+.. .+.-++.|..|| .+-++|.++++. ..+...-+.|.++..+|+|. .++++...
T Consensus 353 -------~iqv~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK-~~vvaNdr 422 (668)
T COG4946 353 -------SIQVGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGK-KVVVANDR 422 (668)
T ss_pred -------eEEcCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCc-EEEEEcCc
Confidence 11234666677777765 455777899999 899999988764 44555678899999999999 78888777
Q ss_pred CcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC----cEEEEeCCC
Q 015484 281 TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDR----RLMVWDLNR 334 (406)
Q Consensus 281 g~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg----~i~iwd~~~ 334 (406)
..|.++|+.+++. ...-+...+-|+.+.|+|+++ ++|-+--+| .|+++|+..
T Consensus 423 ~el~vididngnv-~~idkS~~~lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 423 FELWVIDIDNGNV-RLIDKSEYGLITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred eEEEEEEecCCCe-eEecccccceeEEEEEcCCce-eEEEecCcceeeeeEEEEecCC
Confidence 8999999998764 333344567899999999998 588776665 589999876
No 297
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.92 E-value=3.9e-08 Score=93.55 Aligned_cols=186 Identities=17% Similarity=0.246 Sum_probs=136.8
Q ss_pred CeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCC
Q 015484 180 GYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEK 259 (406)
Q Consensus 180 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 259 (406)
..++-|+....+..+|+++.+..+. ..-....|.-+.. +++.+.+|...|+|.+-|.++.+.+.++.+|.+
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~------~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRT------TNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred cceeecchhhheeeeecccceeeee------eeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeecccc
Confidence 3677787888888999988654321 1112223554543 578888999999999999999999999999999
Q ss_pred CeeEEEecCCCCcEEEEEeC---------CCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEE
Q 015484 260 EVNYLSFNPYNEWVLATASS---------DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVW 330 (406)
Q Consensus 260 ~v~~i~~~~~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iw 330 (406)
.|..+.. .|+ +|++++. |..|+|||+|+... +.-+..+.++ .-+.|+|.-...++.++..|...+-
T Consensus 219 siSDfDv--~GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmra-l~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 219 SISDFDV--QGN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRA-LSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFV 293 (1118)
T ss_pred ceeeeec--cCC-eEEEeecccccccccccchhhhhhhhhhhc-cCCcccccCc-hhhhhcccccceEEEEecccceeec
Confidence 9977655 476 7777764 55789999998764 3333333333 5578889877779999999999999
Q ss_pred eCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 331 DLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 331 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
|...... |+.-++........+..+.+++++. .++-|..+|.|.+|.-.
T Consensus 294 d~~~lsN----------P~~~~~~v~p~~s~i~~fDiSsn~~-alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 294 DTATLSN----------PPAGVKMVNPNGSGISAFDISSNGD-ALAFGDHEGHVNLWADR 342 (1118)
T ss_pred cccccCC----------CccceeEEccCCCcceeEEecCCCc-eEEEecccCcEeeecCC
Confidence 9444222 2233444444555699999999999 79999999999999743
No 298
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.84 E-value=1.6e-07 Score=89.57 Aligned_cols=183 Identities=16% Similarity=0.274 Sum_probs=134.1
Q ss_pred CcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeee
Q 015484 128 PNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDA 207 (406)
Q Consensus 128 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 207 (406)
+..++.|+-...+..+|+.+..+ .....-....|+-++.+ ++ .+.+|...|+|.+-|.++. +.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e--------~r~~~v~a~~v~imR~N--nr-~lf~G~t~G~V~LrD~~s~------~~ 209 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKE--------TRTTNVSASGVTIMRYN--NR-NLFCGDTRGTVFLRDPNSF------ET 209 (1118)
T ss_pred Ccceeecchhhheeeeeccccee--------eeeeeccCCceEEEEec--Cc-EEEeecccceEEeecCCcC------ce
Confidence 34566676677788888887432 22222223345555543 55 8999999999999998774 34
Q ss_pred eeeeeccCccEEEEEeeCCCCCEEEEEec---------CCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEe
Q 015484 208 MHVYEAHESVVEDVSWHLKNENLFGSAGD---------DCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS 278 (406)
Q Consensus 208 ~~~~~~~~~~i~~i~~~p~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~ 278 (406)
++.+..|.+.|.++... +++|+++|. |.-|++||+|..+.+..+.-+.++ .-+.|+|.-...+++++
T Consensus 210 iht~~aHs~siSDfDv~---GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S 285 (1118)
T KOG1275|consen 210 IHTFDAHSGSISDFDVQ---GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTS 285 (1118)
T ss_pred eeeeeccccceeeeecc---CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEe
Confidence 57888999999987764 677777764 556899999998887777555444 45788888766899999
Q ss_pred CCCcEEEEeCCCCCCC---cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 015484 279 SDTTVALFDMRKMTVP---LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDL 332 (406)
Q Consensus 279 ~dg~i~vwd~~~~~~~---~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~ 332 (406)
..|...+-|......| +..+......+..+.++++++ .|+.|..+|.|.+|.-
T Consensus 286 ~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~-alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 286 QSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGD-ALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cccceeeccccccCCCccceeEEccCCCcceeEEecCCCc-eEEEecccCcEeeecC
Confidence 9999999994443333 444455556699999999997 6999999999999983
No 299
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.2e-07 Score=83.44 Aligned_cols=268 Identities=11% Similarity=0.042 Sum_probs=173.9
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC-C
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH-D 188 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-d 188 (406)
+.+-|...|+.+..... .++.+++.||.++.|.-..... ..-+..+..|...|.+++.+-++. ++.|++. |
T Consensus 4 ksymhrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~isG-----vEfVKhFraHL~~I~sl~~S~dg~-L~~Sv~d~D 75 (558)
T KOG0882|consen 4 KSYMHRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRISG-----VEFVKHFRAHLGVILSLAVSYDGW-LFRSVEDPD 75 (558)
T ss_pred hhhcccceeeeEeeehh--heEEeeecchhhhhcCCCCccc-----eeehhhhHHHHHHHHhhhccccce-eEeeccCcc
Confidence 45678888888876654 5899999999999998765211 222455667888999999998888 8888777 9
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCC--CEEEEEecCCcEEEEECCCCccc-c-cccccCCCeeEE
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNE--NLFGSAGDDCQLMIWDLRTNQTQ-Q-RVKAHEKEVNYL 264 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~--~~l~~~~~dg~i~i~d~~~~~~~-~-~~~~~~~~v~~i 264 (406)
..++++|+++-.....++ +.--.+.+..+ .+|.+. .+-++.-.+|.+.++|-+...+. . .-..|..+|..+
T Consensus 76 hs~KvfDvEn~DminmiK----L~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i 150 (558)
T KOG0882|consen 76 HSVKVFDVENFDMINMIK----LVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKI 150 (558)
T ss_pred cceeEEEeeccchhhhcc----cccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEE
Confidence 999999998754322221 11122222221 122111 22233457899999998765432 2 225689999999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCC-CCCC-------------cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEE
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMRK-MTVP-------------LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVW 330 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~-------------~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iw 330 (406)
.+++.+. .+++....|.|.-|.... .+.| +..+...+....++.|+|++.. +.+-+.|..|+++
T Consensus 151 ~y~qa~D-s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q-istl~~DrkVR~F 228 (558)
T KOG0882|consen 151 RYNQAGD-SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQ-ISTLNPDRKVRGF 228 (558)
T ss_pred Eeecccc-ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCc-ccccCcccEEEEE
Confidence 9999998 788888889999998763 1111 1222234566889999999985 8888999999999
Q ss_pred eCCCCCccccccccc----CC---CCeeEEE-----------ecCCC-CCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 331 DLNRIGDEQLELDAE----DG---PPELLFS-----------HGGHK-AKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 331 d~~~~~~~~~~~~~~----~~---~~~~~~~-----------~~~h~-~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
++.++...+...+.. .. +..+... +..|. ..-+.+.|...+.+ |.-++-=| |++.++.+
T Consensus 229 ~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~f-lly~t~~g-ikvin~~t 306 (558)
T KOG0882|consen 229 VFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNF-LLYGTILG-IKVINLDT 306 (558)
T ss_pred EeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCE-EEeeccee-EEEEEeec
Confidence 998754322111110 00 0000000 01122 23467889999985 55555444 88888888
Q ss_pred ccc
Q 015484 392 SIY 394 (406)
Q Consensus 392 ~~~ 394 (406)
+.+
T Consensus 307 n~v 309 (558)
T KOG0882|consen 307 NTV 309 (558)
T ss_pred CeE
Confidence 754
No 300
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.1e-06 Score=76.49 Aligned_cols=247 Identities=10% Similarity=0.084 Sum_probs=143.2
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
.|...|..++|+|....++..++.+.+|.|.|+.+. ..+..+..| ..+++++|.-+..++|.+|...|.|.
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~--------~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vl 261 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS--------CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVL 261 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccc--------eeeeheecc-CCceeeeeccCCcceeEEeccCceEE
Confidence 467899999999988668999999999999999983 224455556 78999999999988999999999999
Q ss_pred EEeCCCccCCceeeeeeeeec--cCccEEEEEeeCC-----CCCEEEEEecCCcEEEEECCCC--cccccc-cccCCCee
Q 015484 193 LWDVSALAQDKVIDAMHVYEA--HESVVEDVSWHLK-----NENLFGSAGDDCQLMIWDLRTN--QTQQRV-KAHEKEVN 262 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~p~-----~~~~l~~~~~dg~i~i~d~~~~--~~~~~~-~~~~~~v~ 262 (406)
+||++...... ..+.+ ...+|..++.-+. .+.+++....+ +..|.+... .....+ ....+...
T Consensus 262 vyD~R~~~~~~-----~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~ci 334 (463)
T KOG1645|consen 262 VYDMRQPEGPL-----MELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICI 334 (463)
T ss_pred EEEccCCCchH-----hhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCccee
Confidence 99998754321 11111 1233444332221 24444433332 445654422 112212 12355667
Q ss_pred EEEecCCCCcEEEEEeCCC---c---EEE-EeCCCCCCCcEEecCC-CCC------eEEEEEcCCCCCEEEEEeCCCcEE
Q 015484 263 YLSFNPYNEWVLATASSDT---T---VAL-FDMRKMTVPLHILSSH-TEE------VFQVEWDPNHETVLASSADDRRLM 328 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~dg---~---i~v-wd~~~~~~~~~~~~~h-~~~------v~~i~~~p~~~~~l~s~~~dg~i~ 328 (406)
+++.++..+.+|++.-.+. + |.. -|.+.+......-..+ .+. -..+.=.++...++..+..-+.+.
T Consensus 335 smqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~li 414 (463)
T KOG1645|consen 335 SMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELI 414 (463)
T ss_pred eeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeE
Confidence 7777776665666654421 1 111 1111111111111111 000 011222344555666777778999
Q ss_pred EEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCC-CCCcEEEEEeCCCcEEEEeCCC
Q 015484 329 VWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNK-NDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 329 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
+||..+. +.+..+. -..+|.+++... ++..+|+.-. |..++||..+.
T Consensus 415 l~D~~s~--------------evvQ~l~-~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 415 LQDPHSF--------------EVVQTLA-LSEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred Eeccchh--------------heeeecc-cCcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence 9999873 3444433 236777777644 3333455544 77899997654
No 301
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=3.9e-07 Score=79.19 Aligned_cols=159 Identities=16% Similarity=0.232 Sum_probs=108.2
Q ss_pred CCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe
Q 015484 156 CDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG 235 (406)
Q Consensus 156 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~ 235 (406)
.++...+.+|...|.+++|+|...+++..++.+..|+|.|+++... ...+..+ ..+++++|.-++.+++.+|-
T Consensus 183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~------vssy~a~-~~~wSC~wDlde~h~IYaGl 255 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV------VSSYIAY-NQIWSCCWDLDERHVIYAGL 255 (463)
T ss_pred cchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccccee------eeheecc-CCceeeeeccCCcceeEEec
Confidence 3444567788899999999999888999999999999999998543 2334444 78999999998899999999
Q ss_pred cCCcEEEEECCCCccc-cccc--ccCCCeeEEEec------CCCCcEEEEEeCCCcEEEEeCCCCC--CCcEEecCCCCC
Q 015484 236 DDCQLMIWDLRTNQTQ-QRVK--AHEKEVNYLSFN------PYNEWVLATASSDTTVALFDMRKMT--VPLHILSSHTEE 304 (406)
Q Consensus 236 ~dg~i~i~d~~~~~~~-~~~~--~~~~~v~~i~~~------~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~h~~~ 304 (406)
..|.|.+||++..+.. ..+. ....+|..++.- +.+. +|+....+ +..|.+.... .+...-....+.
T Consensus 256 ~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~ 332 (463)
T KOG1645|consen 256 QNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALTV--LQFYEIVFSAECLPCVLELEPPGI 332 (463)
T ss_pred cCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc-eEEeeehh--hhhhhhhccccCCCcccccCCCcc
Confidence 9999999999976542 2221 233455554432 2344 44444332 5667654322 111122233566
Q ss_pred eEEEEEcCCCCCEEEEEeCC
Q 015484 305 VFQVEWDPNHETVLASSADD 324 (406)
Q Consensus 305 v~~i~~~p~~~~~l~s~~~d 324 (406)
..+++.++..+++|++.-.+
T Consensus 333 cismqy~~~snh~l~tyRs~ 352 (463)
T KOG1645|consen 333 CISMQYHGVSNHLLLTYRSN 352 (463)
T ss_pred eeeeeecCccceEEEEecCC
Confidence 77888888777777776553
No 302
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.78 E-value=3.1e-08 Score=84.19 Aligned_cols=152 Identities=13% Similarity=0.187 Sum_probs=107.8
Q ss_pred EEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeee
Q 015484 133 TKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYE 212 (406)
Q Consensus 133 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 212 (406)
+.+.+-.|.+-++.++- ...+. .++.|.++.|...++ +++.|..+|.|...|++.......... .. -
T Consensus 229 s~G~sqqv~L~nvetg~---------~qsf~-sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a-~r-l 295 (425)
T KOG2695|consen 229 SVGLSQQVLLTNVETGH---------QQSFQ-SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCA-QR-L 295 (425)
T ss_pred cccccceeEEEEeeccc---------ccccc-cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcce-EE-E
Confidence 33445567788887731 12232 567899999998787 999999999999999998755433322 22 2
Q ss_pred ccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc---cccccccCCCeeEE--EecCCCCcEEEEEeCCCcEEEEe
Q 015484 213 AHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT---QQRVKAHEKEVNYL--SFNPYNEWVLATASSDTTVALFD 287 (406)
Q Consensus 213 ~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~i--~~~~~~~~~l~~~~~dg~i~vwd 287 (406)
-|.+.|+++..-..++..|.+.+.+|.|.+||+|.-++ +.++.+|-..-.-+ ..++... .+++++.|...+||.
T Consensus 296 yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~GdDcytRiWs 374 (425)
T KOG2695|consen 296 YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVGDDCYTRIWS 374 (425)
T ss_pred EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccc-eEEEccCeeEEEEEe
Confidence 47889999886654677888889999999999998766 66666664332222 2344455 788899999999999
Q ss_pred CCCCCCCcEEec
Q 015484 288 MRKMTVPLHILS 299 (406)
Q Consensus 288 ~~~~~~~~~~~~ 299 (406)
++.+.. +.++.
T Consensus 375 l~~ghL-l~tip 385 (425)
T KOG2695|consen 375 LDSGHL-LCTIP 385 (425)
T ss_pred cccCce-eeccC
Confidence 998654 44443
No 303
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.77 E-value=5e-07 Score=84.82 Aligned_cols=269 Identities=13% Similarity=0.136 Sum_probs=168.4
Q ss_pred EEEEee-cCCceeEEEEcCC-----------CCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEec
Q 015484 108 IAQKIR-VDGEVNRARCMPQ-----------KPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWS 175 (406)
Q Consensus 108 ~~~~~~-h~~~v~~i~~~p~-----------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 175 (406)
.++.++ |+..|+.++|.|. ..-+||++.-.|.|.+||.... ..+..+..|.+++..++|-
T Consensus 47 ~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~--------s~~~~l~~~~~~~qdl~W~ 118 (1062)
T KOG1912|consen 47 LIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA--------SVINWLSHSNDSVQDLCWV 118 (1062)
T ss_pred hhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh--------hhhhhhcCCCcchhheeee
Confidence 344444 7799999999883 1236788888999999999873 3356678889999999997
Q ss_pred CC---CCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc--
Q 015484 176 PF---KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT-- 250 (406)
Q Consensus 176 ~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-- 250 (406)
+. .+..|++-....+|.+|+..+|... ...........|+.+.|.+.+.|..-+..|.+.+.+.-..+.
T Consensus 119 ~~rd~Srd~LlaIh~ss~lvLwntdtG~k~------Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~ 192 (1062)
T KOG1912|consen 119 PARDDSRDVLLAIHGSSTLVLWNTDTGEKF------WKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPD 192 (1062)
T ss_pred eccCcchheeEEecCCcEEEEEEccCCcee------eccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCC
Confidence 64 2236777777889999999988642 222333456777999998888887777778777766432110
Q ss_pred --cccc---cccCC-------------------------CeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC
Q 015484 251 --QQRV---KAHEK-------------------------EVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS 300 (406)
Q Consensus 251 --~~~~---~~~~~-------------------------~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 300 (406)
.+.+ ..|.. ..-.++|+|.-++.++..- ...+.++|+.-.. ++.....
T Consensus 193 ~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~-prellv~dle~~~-~l~vvpi 270 (1062)
T KOG1912|consen 193 VPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF-PRELLVFDLEYEC-CLAVVPI 270 (1062)
T ss_pred CCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe-ccceEEEcchhhc-eeEEEEe
Confidence 0100 11111 0123567887775555544 5679999998744 4666666
Q ss_pred CCCCeEEEEEcCCCCC-EEEEEeCCCcEEEEeCCCCCcccccccc----cC-CCCeeEEEecCCCCCeeeEEeCCCCCcE
Q 015484 301 HTEEVFQVEWDPNHET-VLASSADDRRLMVWDLNRIGDEQLELDA----ED-GPPELLFSHGGHKAKISDFSWNKNDPWV 374 (406)
Q Consensus 301 h~~~v~~i~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~~ 374 (406)
..+.+.-+.|-|+.+. .|.+...||.+.||-.+......+.... .. .....+.... .-.+......|..+..
T Consensus 271 er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~--~~rp~~~~~cPs~~sa 348 (1062)
T KOG1912|consen 271 ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPME--EFRPVIGASCPSTPSA 348 (1062)
T ss_pred ccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeech--hcccceeecCCCChhh
Confidence 6676777788777542 6888899999999976553222211000 00 0011111111 1123333445553333
Q ss_pred EEEEeCCCcEEEEeCCCccc
Q 015484 375 ISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 375 l~s~~~dg~i~iw~~~~~~~ 394 (406)
++.--.+|.+.+|++.++..
T Consensus 349 ~avl~s~g~~~~w~l~~~ri 368 (1062)
T KOG1912|consen 349 LAVLYSSGDSTFWQLSNGRI 368 (1062)
T ss_pred hhhhhhcchhHHHhhhcCCc
Confidence 44444578899999997654
No 304
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.77 E-value=1.7e-05 Score=68.35 Aligned_cols=234 Identities=18% Similarity=0.194 Sum_probs=145.9
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCe-EEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec-----CCC
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCE-VYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS-----HDN 189 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-----~dg 189 (406)
...-.++.+|..+..++.+-.-|+ ..+||..+..........+-..+.+| -.|+++|+ +|++.- ..|
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~-~LytTEnd~~~g~G 77 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGR-LLYTTENDYETGRG 77 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCC-EEEEeccccCCCcE
Confidence 445567888877678888887775 67899987544322222333445554 36999999 777753 358
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe-----------------cCCcEEEEECCCCcccc
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG-----------------DDCQLMIWDLRTNQTQQ 252 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-----------------~dg~i~i~d~~~~~~~~ 252 (406)
.|-|||...+ +..+..+..+.-....+.+.|++..++++-+ .+-++.+.|.++++.+.
T Consensus 78 ~IgVyd~~~~-----~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~ 152 (305)
T PF07433_consen 78 VIGVYDAARG-----YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLE 152 (305)
T ss_pred EEEEEECcCC-----cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceee
Confidence 9999999832 2334556667666778888984434443321 12346666777787765
Q ss_pred c--c--cccCCCeeEEEecCCCCcEEEEEeCCC-------cEEEEeCCCCCCCcEEe-------cCCCCCeEEEEEcCCC
Q 015484 253 R--V--KAHEKEVNYLSFNPYNEWVLATASSDT-------TVALFDMRKMTVPLHIL-------SSHTEEVFQVEWDPNH 314 (406)
Q Consensus 253 ~--~--~~~~~~v~~i~~~~~~~~~l~~~~~dg-------~i~vwd~~~~~~~~~~~-------~~h~~~v~~i~~~p~~ 314 (406)
. + ..|.-.+..++++++|. .++..-..| -|-+++.... +..+ ..-.+.+-+|++++++
T Consensus 153 q~~Lp~~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g~~---~~~~~~p~~~~~~l~~Y~gSIa~~~~g 228 (305)
T PF07433_consen 153 QVELPPDLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRGGA---LRLLPAPEEQWRRLNGYIGSIAADRDG 228 (305)
T ss_pred eeecCccccccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCCCc---ceeccCChHHHHhhCCceEEEEEeCCC
Confidence 5 3 33677899999999987 444333332 2334433321 1112 2234679999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcE
Q 015484 315 ETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTV 384 (406)
Q Consensus 315 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i 384 (406)
..+.+|+=..+.+.+||..+. .++.... -..+..++-.+++ +++|.+ .|.+
T Consensus 229 ~~ia~tsPrGg~~~~~d~~tg--------------~~~~~~~--l~D~cGva~~~~~--f~~ssG-~G~~ 279 (305)
T PF07433_consen 229 RLIAVTSPRGGRVAVWDAATG--------------RLLGSVP--LPDACGVAPTDDG--FLVSSG-QGQL 279 (305)
T ss_pred CEEEEECCCCCEEEEEECCCC--------------CEeeccc--cCceeeeeecCCc--eEEeCC-CccE
Confidence 866677778999999998872 3332222 2346667776666 466655 3443
No 305
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=2.7e-06 Score=80.98 Aligned_cols=198 Identities=12% Similarity=0.177 Sum_probs=132.8
Q ss_pred EcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC-----eEEEEeCC
Q 015484 123 CMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN-----KICLWDVS 197 (406)
Q Consensus 123 ~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-----~i~iwd~~ 197 (406)
|++.+ ..+|.|+.+|.|.+.+-.- +....++.+...+...-|.-++.++|++.+.|+ .+++|+++
T Consensus 31 ~~s~~-~~vvigt~~G~V~~Ln~s~---------~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 31 CSSST-GSVVIGTADGRVVILNSSF---------QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred EcCCC-ceEEEeeccccEEEecccc---------eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence 45555 5799999999988877543 223556666666444445555655888887765 48999998
Q ss_pred CccCCceeeee---eee----eccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCC----CcccccccccCCCeeEEEe
Q 015484 198 ALAQDKVIDAM---HVY----EAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT----NQTQQRVKAHEKEVNYLSF 266 (406)
Q Consensus 198 ~~~~~~~~~~~---~~~----~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~v~~i~~ 266 (406)
.........++ ..+ .....++.+++.+. +-..+|+|-.+|.|.++.-.- +...........+|+.+.+
T Consensus 101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~ 179 (933)
T KOG2114|consen 101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLAL 179 (933)
T ss_pred ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEE
Confidence 76433322222 111 12356788999986 678888999999999885321 1111112345789999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 267 NPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
..++...+++++. ..|.+|.+.........+..|...++|..+++....+++++ ...+.+|+...
T Consensus 180 ~~d~~s~lFv~Tt-~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~--~e~l~fY~sd~ 244 (933)
T KOG2114|consen 180 RSDGKSVLFVATT-EQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG--SEFLYFYDSDG 244 (933)
T ss_pred ecCCceeEEEEec-ceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec--CceEEEEcCCC
Confidence 9888853444443 47999999855523445788888999999998876544433 45799999875
No 306
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.67 E-value=2e-05 Score=68.05 Aligned_cols=199 Identities=13% Similarity=0.164 Sum_probs=126.5
Q ss_pred EEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc
Q 015484 171 GLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT 250 (406)
Q Consensus 171 ~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~ 250 (406)
++.|.+....++++--..+.|..|+..++.. ..+.. .. ...+++...++.++ .+.. +.+.++|+.+++.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~-------~~~~~-~~-~~G~~~~~~~g~l~-v~~~-~~~~~~d~~~g~~ 72 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV-------EVIDL-PG-PNGMAFDRPDGRLY-VADS-GGIAVVDPDTGKV 72 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE-------EEEES-SS-EEEEEEECTTSEEE-EEET-TCEEEEETTTTEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE-------EEEec-CC-CceEEEEccCCEEE-EEEc-CceEEEecCCCcE
Confidence 6789884443777777789999999887532 11121 22 67777773255554 4444 4456669988765
Q ss_pred cccccc-----cCCCeeEEEecCCCCcEEEEEeCC--------CcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCE
Q 015484 251 QQRVKA-----HEKEVNYLSFNPYNEWVLATASSD--------TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETV 317 (406)
Q Consensus 251 ~~~~~~-----~~~~v~~i~~~~~~~~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~ 317 (406)
...... .....+.+++.|+|. +.++.... |.|..++.. .+ +......-...+.|+|+|+++.+
T Consensus 73 ~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~--~~~~~~~~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 73 TVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GK--VTVVADGLGFPNGIAFSPDGKTL 148 (246)
T ss_dssp EEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE--EEEEEEEESSEEEEEEETTSSEE
T ss_pred EEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-Ce--EEEEecCcccccceEECCcchhe
Confidence 333322 345678899999998 66665543 457777766 22 33333334567999999999877
Q ss_pred EEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 318 LASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 318 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
+++-+..+.|..+++......... ...........+..-.+++..+|. +.++....+.|.+++....
T Consensus 149 yv~ds~~~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~G~ 215 (246)
T PF08450_consen 149 YVADSFNGRIWRFDLDADGGELSN-------RRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPDGK 215 (246)
T ss_dssp EEEETTTTEEEEEEEETTTCCEEE-------EEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETTSC
T ss_pred eecccccceeEEEeccccccceee-------eeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCCcc
Confidence 778888999999998653321110 122223333333477899999998 6777777899999998844
No 307
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.65 E-value=9e-09 Score=94.22 Aligned_cols=207 Identities=15% Similarity=0.235 Sum_probs=137.7
Q ss_pred CCeeEEEecCCCC-CeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe----cCCcEE
Q 015484 167 KEGYGLSWSPFKE-GYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG----DDCQLM 241 (406)
Q Consensus 167 ~~v~~l~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~----~dg~i~ 241 (406)
..+.|++++-... .+++.|..+|.|.+-.++..... ......++....++++|++-+.+.||+|- .|..+.
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS----s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~ 132 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS----SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLK 132 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccc----cceecccccccccccccccccHHHHHhhhhhhcccCCcc
Confidence 4566777765433 47889999999999988764332 11334567789999999998888887774 467899
Q ss_pred EEECCCC--ccc--ccccc-cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCC
Q 015484 242 IWDLRTN--QTQ--QRVKA-HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHET 316 (406)
Q Consensus 242 i~d~~~~--~~~--~~~~~-~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~ 316 (406)
|||+.++ .+. ..+.+ ......+++|..+.+ ++.+|.....+.++|+|...... ....+..+..+...|-...
T Consensus 133 Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~~~~--~svnTk~vqG~tVdp~~~n 209 (783)
T KOG1008|consen 133 IWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSLDSV--SSVNTKYVQGITVDPFSPN 209 (783)
T ss_pred ceecccccCCCccccccccccccCccccccccCcc-hhhcccccchhhhhhhhhhhhhh--hhhhhhhcccceecCCCCC
Confidence 9999876 221 12222 345567899997777 88889888899999999533212 2223456777888884444
Q ss_pred EEEEEeCCCcEEEEe-CCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCC-CcEEEEeCC
Q 015484 317 VLASSADDRRLMVWD-LNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADD-NTVQVWQMT 390 (406)
Q Consensus 317 ~l~s~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~d-g~i~iw~~~ 390 (406)
++++.. ||.|-+|| .++.+.+....... -......+..++|+|....++++...| ++|+.+++.
T Consensus 210 Y~cs~~-dg~iAiwD~~rnienpl~~i~~~---------~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 210 YFCSNS-DGDIAIWDTYRNIENPLQIILRN---------ENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ceeccc-cCceeeccchhhhccHHHHHhhC---------CCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 465554 99999999 44433222111000 011122488999999876667776655 678888875
No 308
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.65 E-value=2e-05 Score=78.10 Aligned_cols=206 Identities=16% Similarity=0.271 Sum_probs=128.1
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
+.|.++.|.-+. +-++.+...|.|.+-|..+.. ......-...|.+++|+|++. .++-.+..+++.+.+
T Consensus 69 ~~i~s~~fl~d~-~~i~v~~~~G~iilvd~et~~---------~eivg~vd~GI~aaswS~Dee-~l~liT~~~tll~mT 137 (1265)
T KOG1920|consen 69 DEIVSVQFLADT-NSICVITALGDIILVDPETLE---------LEIVGNVDNGISAASWSPDEE-LLALITGRQTLLFMT 137 (1265)
T ss_pred cceEEEEEeccc-ceEEEEecCCcEEEEcccccc---------eeeeeeccCceEEEeecCCCc-EEEEEeCCcEEEEEe
Confidence 579999999887 567778889999998777631 222233457899999999998 888888878877654
Q ss_pred CC----Ccc--------CCceee-----eeeeeec---------------------cCccEEEEEeeCCCCCEEEEEe--
Q 015484 196 VS----ALA--------QDKVID-----AMHVYEA---------------------HESVVEDVSWHLKNENLFGSAG-- 235 (406)
Q Consensus 196 ~~----~~~--------~~~~~~-----~~~~~~~---------------------~~~~i~~i~~~p~~~~~l~~~~-- 235 (406)
-. ..+ ..+.+. .-..+.+ ....=+.|.|-- ++.+||+..
T Consensus 138 ~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~ 216 (1265)
T KOG1920|consen 138 KDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVE 216 (1265)
T ss_pred ccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEe
Confidence 31 000 000000 0001110 011123478885 677887732
Q ss_pred --cC-CcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEe---CCCcEEEEeCCCCCCC--cEEecCCCCCeEE
Q 015484 236 --DD-CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS---SDTTVALFDMRKMTVP--LHILSSHTEEVFQ 307 (406)
Q Consensus 236 --~d-g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~--~~~~~~h~~~v~~ 307 (406)
.+ ..|++||-+ +..-..-......-.+++|-|.|. ++++-. +|+.|.+|.-.....- ...+......|..
T Consensus 217 ~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs-~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~ 294 (1265)
T KOG1920|consen 217 SETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGS-LIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEE 294 (1265)
T ss_pred ccCCceeEEEeccc-chhhcccCcccccccceeecCCCC-eEeeeeecCCCCcEEEEecCCccccccccCCcccccchhe
Confidence 33 789999976 443222233344456899999998 777654 3557989876543221 1112223344899
Q ss_pred EEEcCCCCCEEEE---EeCCCcEEEEeCCCCC
Q 015484 308 VEWDPNHETVLAS---SADDRRLMVWDLNRIG 336 (406)
Q Consensus 308 i~~~p~~~~~l~s---~~~dg~i~iwd~~~~~ 336 (406)
++|+.++. +|++ ......|++|-+.+..
T Consensus 295 L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 295 LAWNSNSD-ILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred eeecCCCC-ceeeeecccccceEEEEEecCeE
Confidence 99999997 6766 4555569999987643
No 309
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=2e-06 Score=81.27 Aligned_cols=183 Identities=14% Similarity=0.195 Sum_probs=126.6
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEE
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLW 194 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 194 (406)
...+.|++++. .+|+-|+-+|.|++++.+.. + .....|+.. ...|. ++++|+.||+|.|-
T Consensus 39 ~D~is~~av~~---~~~~~GtH~g~v~~~~~~~~---------~-~~~~~~s~~------~~~Ge-y~asCS~DGkv~I~ 98 (846)
T KOG2066|consen 39 NDAISCCAVHD---KFFALGTHRGAVYLTTCQGN---------P-KTNFDHSSS------ILEGE-YVASCSDDGKVVIG 98 (846)
T ss_pred hhHHHHHHhhc---ceeeeccccceEEEEecCCc---------c-ccccccccc------ccCCc-eEEEecCCCcEEEe
Confidence 46777777764 57999999999999998762 1 223334433 55577 99999999999999
Q ss_pred eCCCccCCceeeeeeeeeccCccEEEEEeeCC----CCCEEEEEecCCcEEEEECCCCcc--cccccccCCCeeEEEecC
Q 015484 195 DVSALAQDKVIDAMHVYEAHESVVEDVSWHLK----NENLFGSAGDDCQLMIWDLRTNQT--QQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 195 d~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~----~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~i~~~~ 268 (406)
.+-+.+.... .....++.+|+++|+ ..+.|++||.-| +.++.-+-... ...+....++|.++.|.
T Consensus 99 sl~~~~~~~~-------~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~- 169 (846)
T KOG2066|consen 99 SLFTDDEITQ-------YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR- 169 (846)
T ss_pred eccCCcccee-------EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec-
Confidence 8877654211 124678999999984 357788999888 77775332111 11345567899999997
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCC------CeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTE------EVFQVEWDPNHETVLASSADDRRLMVWDLN 333 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~------~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~ 333 (406)
|. ++|-++.+| |++||...... +..+..... ....+.|.++.+ |+.| ...+|+|..++
T Consensus 170 -g~-lIAWand~G-v~vyd~~~~~~-l~~i~~p~~~~R~e~fpphl~W~~~~~--LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 170 -GN-LIAWANDDG-VKVYDTPTRQR-LTNIPPPSQSVRPELFPPHLHWQDEDR--LVIG-WGDSVKICSIK 233 (846)
T ss_pred -Cc-EEEEecCCC-cEEEeccccce-eeccCCCCCCCCcccCCCceEecCCCe--EEEe-cCCeEEEEEEe
Confidence 55 888888776 99999987554 333332222 235678888774 4333 44578888887
No 310
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.64 E-value=6.6e-06 Score=73.87 Aligned_cols=242 Identities=15% Similarity=0.226 Sum_probs=150.6
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC----
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN---- 189 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg---- 189 (406)
-.-++..++|+|.| .+|++....| |.+|.-.... .+..+. ...|..+.|+|.+. +|.+=+..+
T Consensus 31 ~~~p~~~~~~SP~G-~~l~~~~~~~-V~~~~g~~~~--------~l~~~~--~~~V~~~~fSP~~k-YL~tw~~~pi~~p 97 (561)
T COG5354 31 ENWPVAYVSESPLG-TYLFSEHAAG-VECWGGPSKA--------KLVRFR--HPDVKYLDFSPNEK-YLVTWSREPIIEP 97 (561)
T ss_pred cCcchhheeecCcc-hheehhhccc-eEEccccchh--------heeeee--cCCceecccCcccc-eeeeeccCCccCh
Confidence 34678899999999 5787777666 9999887631 123332 34688999999998 998865543
Q ss_pred -----------eEEEEeCCCccCCceeeeeeeeeccCcc--EE-EEEeeCCCCCEEEEEecCCcEEEEECCCCcc-cccc
Q 015484 190 -----------KICLWDVSALAQDKVIDAMHVYEAHESV--VE-DVSWHLKNENLFGSAGDDCQLMIWDLRTNQT-QQRV 254 (406)
Q Consensus 190 -----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~--i~-~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~ 254 (406)
.+.+||+.++... ..+.....+ .. -+.|+- +..+.|-. -...++++++ ++.. ...+
T Consensus 98 e~e~sp~~~~n~~~vwd~~sg~iv------~sf~~~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~-t~n~~~~p~ 168 (561)
T COG5354 98 EIEISPFTSKNNVFVWDIASGMIV------FSFNGISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHEI-TDNIEEHPF 168 (561)
T ss_pred hhccCCccccCceeEEeccCceeE------eeccccCCcccccceeeeee-cchhhhhh-ccCeEEEEec-CCccccCch
Confidence 4899999887542 222222222 33 567886 44444333 3346999997 3332 2222
Q ss_pred cc-cCCCeeEEEecCCCCc-EEEE-----EeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeC----
Q 015484 255 KA-HEKEVNYLSFNPYNEW-VLAT-----ASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSAD---- 323 (406)
Q Consensus 255 ~~-~~~~v~~i~~~~~~~~-~l~~-----~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~---- 323 (406)
.. ....+...+|+|-++. .||. ++..+.+++|.+..... +.+...-...=..+.|++.|.++++-.-.
T Consensus 169 ~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~-l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ks 247 (561)
T COG5354 169 KNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV-LVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKS 247 (561)
T ss_pred hhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe-eeeeeeEeecccEEEEecCCceEEEEEEEeeec
Confidence 21 2366888899997431 3333 34567899999885433 43333333344578899999875543322
Q ss_pred ------CCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCc-EEEEEeCCCcEEEEeCCCcc
Q 015484 324 ------DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPW-VISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 324 ------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-~l~s~~~dg~i~iw~~~~~~ 393 (406)
...+.|+++.... +.....-.++|.+++|.|.++. -+++|-.+..+.++++...+
T Consensus 248 nKsyfgesnLyl~~~~e~~---------------i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl 309 (561)
T COG5354 248 NKSYFGESNLYLLRITERS---------------IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL 309 (561)
T ss_pred ccceeccceEEEEeecccc---------------cceeccccccceeeeecccCCceeEEecccccceeecccccce
Confidence 2456667665311 1111144678999999998874 33444577888888888774
No 311
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.64 E-value=1.3e-07 Score=55.60 Aligned_cols=38 Identities=24% Similarity=0.625 Sum_probs=35.0
Q ss_pred eeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 350 ELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 350 ~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
+++..+.+|...|++++|+|++. +|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 46778899999999999999988 799999999999997
No 312
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.62 E-value=8.5e-08 Score=56.43 Aligned_cols=37 Identities=35% Similarity=0.677 Sum_probs=34.5
Q ss_pred CceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 158 PDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 158 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
+...+.+|.+.|++|+|+|++. +|++|+.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 3678999999999999999987 999999999999997
No 313
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.59 E-value=0.00055 Score=63.37 Aligned_cols=170 Identities=14% Similarity=0.228 Sum_probs=106.1
Q ss_pred EEEEEeeCCCCCEEEEEe----cCCc----EEEEECCCCccc----ccccccCCCeeEEEecCCCCcEEEEEeCCCcEEE
Q 015484 218 VEDVSWHLKNENLFGSAG----DDCQ----LMIWDLRTNQTQ----QRVKAHEKEVNYLSFNPYNEWVLATASSDTTVAL 285 (406)
Q Consensus 218 i~~i~~~p~~~~~l~~~~----~dg~----i~i~d~~~~~~~----~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~v 285 (406)
..++.|+-..++.+.+.. .+|. -.+|+....+.. .+ -.....|.+++++|+.. .|+.|+.||.|.+
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvts-ipL~s~v~~ca~sp~E~-kLvlGC~DgSiiL 285 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTS-IPLPSQVICCARSPSED-KLVLGCEDGSIIL 285 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEE-EecCCcceEEecCcccc-eEEEEecCCeEEE
Confidence 456677765566665542 3443 335666544321 12 23577899999999998 8999999999999
Q ss_pred EeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEe---cCCCCCe
Q 015484 286 FDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH---GGHKAKI 362 (406)
Q Consensus 286 wd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v 362 (406)
||.... +.......-.++.++|+|+|. ++++|+..|.+.+||+.-..-...... ++..+.....+ -.+...+
T Consensus 286 yD~~~~---~t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALspi~~qLls-Ed~~P~~~L~Ls~yf~~~~~L 360 (545)
T PF11768_consen 286 YDTTRG---VTLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALSPIKMQLLS-EDATPKSTLQLSKYFRVSSSL 360 (545)
T ss_pred EEcCCC---eeeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeecCccceeecc-ccCCCccEEeeehhccCcchh
Confidence 998754 333444456789999999996 799999999999999875332222221 12222222222 2345567
Q ss_pred eeEEeCCCCC------------cEEEEEeCCCcEEEEeCCCccc
Q 015484 363 SDFSWNKNDP------------WVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 363 ~~~~~s~~~~------------~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
..+.|.+... .+++-.=+.|-+-+-.+..|..
T Consensus 361 ~~iqW~~~~~~~~~~~~~~~~~~~L~l~f~~GPl~vl~~~~G~~ 404 (545)
T PF11768_consen 361 VHIQWAPAPQLSSQGEFYADTYDLLLLVFERGPLAVLRFKLGVF 404 (545)
T ss_pred heeEeccCCCccccCCCcCCccceEEEEEcCCCeEEEEEeeccc
Confidence 7888884432 1233333445555555555444
No 314
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=1.4e-05 Score=76.22 Aligned_cols=195 Identities=14% Similarity=0.205 Sum_probs=126.7
Q ss_pred EecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCc-----EEEEECCC
Q 015484 173 SWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQ-----LMIWDLRT 247 (406)
Q Consensus 173 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~-----i~i~d~~~ 247 (406)
+|++.+. .++.|+.+|.|.+.+-. ++.++.++.+...+...-+.-....+|++.+.|+. +++||+..
T Consensus 30 c~~s~~~-~vvigt~~G~V~~Ln~s-------~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek 101 (933)
T KOG2114|consen 30 CCSSSTG-SVVIGTADGRVVILNSS-------FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK 101 (933)
T ss_pred EEcCCCc-eEEEeeccccEEEeccc-------ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence 3566565 99999999999887633 22335555666553333344335568888776654 89999874
Q ss_pred Cc------cc--ccc-----cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCC---CCCCCcEEecCCCCCeEEEEEc
Q 015484 248 NQ------TQ--QRV-----KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMR---KMTVPLHILSSHTEEVFQVEWD 311 (406)
Q Consensus 248 ~~------~~--~~~-----~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~---~~~~~~~~~~~h~~~v~~i~~~ 311 (406)
-+ ++ ..+ .....++.+++.+.+-. .+|+|-.+|.|..+.-. ..............+|+.+.+.
T Consensus 102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~ 180 (933)
T KOG2114|consen 102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR 180 (933)
T ss_pred cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe
Confidence 31 11 011 12356788899998866 89999999999988532 2122223333446799999999
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 312 PNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 312 p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
.++..++.++. -..|.+|.+... ...+..+..|...+.+.++++.... +++++ +..|.+|+.+.
T Consensus 181 ~d~~s~lFv~T-t~~V~~y~l~gr-------------~p~~~~ld~~G~~lnCss~~~~t~q-fIca~-~e~l~fY~sd~ 244 (933)
T KOG2114|consen 181 SDGKSVLFVAT-TEQVMLYSLSGR-------------TPSLKVLDNNGISLNCSSFSDGTYQ-FICAG-SEFLYFYDSDG 244 (933)
T ss_pred cCCceeEEEEe-cceeEEEEecCC-------------CcceeeeccCCccceeeecCCCCcc-EEEec-CceEEEEcCCC
Confidence 99876333333 457999998741 1234446667778999999886653 44444 45799998875
Q ss_pred c
Q 015484 392 S 392 (406)
Q Consensus 392 ~ 392 (406)
.
T Consensus 245 ~ 245 (933)
T KOG2114|consen 245 R 245 (933)
T ss_pred c
Confidence 4
No 315
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.54 E-value=0.00024 Score=63.61 Aligned_cols=200 Identities=13% Similarity=0.107 Sum_probs=108.6
Q ss_pred eEEEEcCCCCcEEEEEeC-CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCC
Q 015484 119 NRARCMPQKPNLVGTKTS-SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVS 197 (406)
Q Consensus 119 ~~i~~~p~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~ 197 (406)
..++++|+|+.++++--. +..|.+.|+...+. +..+.. .+...-...+. .. ...-+.||......+.
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv--------v~ei~v-p~~~~vy~t~e-~~--~~~~~~Dg~~~~v~~d 175 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF--------VRMMDV-PDCYHIFPTAN-DT--FFMHCRDGSLAKVGYG 175 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcE--------EEEEeC-CCCcEEEEecC-Cc--cEEEeecCceEEEEec
Confidence 378999999544434324 78999999998432 232322 11111222222 11 1222345555554444
Q ss_pred CccCCceeeeeeeeeccCccEEE-EEeeCCCCCEEEEEecCCcEEEEECCCCc-----ccccccc-------cCCCeeEE
Q 015484 198 ALAQDKVIDAMHVYEAHESVVED-VSWHLKNENLFGSAGDDCQLMIWDLRTNQ-----TQQRVKA-------HEKEVNYL 264 (406)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~i~~-i~~~p~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~-------~~~~v~~i 264 (406)
...... ......+.....++.. -.|.+.++..+.+... |.|.+.|+.... ....+.. ....+.-+
T Consensus 176 ~~g~~~-~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~i 253 (352)
T TIGR02658 176 TKGNPK-IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQV 253 (352)
T ss_pred CCCceE-EeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeE
Confidence 322211 1111111110011100 0345535566655555 999999964432 2222210 12333449
Q ss_pred EecCCCCcEEEEEe---------CCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCC-CEEEEEeCCCcEEEEeCCC
Q 015484 265 SFNPYNEWVLATAS---------SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHE-TVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 265 ~~~~~~~~~l~~~~---------~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~-~~l~s~~~dg~i~iwd~~~ 334 (406)
+++|+++.+++... ..+.|.++|..+.+. +..+.. ...+..++++|+++ .++++...++.|.++|..+
T Consensus 254 a~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv-i~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 254 AYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR-LRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred EEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeE-EEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 99999984444231 124799999988665 554443 45789999999998 5444555789999999987
No 316
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.53 E-value=8.1e-08 Score=91.23 Aligned_cols=198 Identities=15% Similarity=0.209 Sum_probs=132.9
Q ss_pred CeEEEEEe-ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEE
Q 015484 105 KVEIAQKI-RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLV 183 (406)
Q Consensus 105 ~~~~~~~~-~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 183 (406)
+|+..+.+ .|....+|++|+-.. +.|++|+-.|.|++|++.++.. ......|.++|+-+.=+.+|.-.|.
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~~--------e~s~ncH~SavT~vePs~dgs~~Lt 1160 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGSM--------EESVNCHQSAVTLVEPSVDGSTQLT 1160 (1516)
T ss_pred hcccchhhhccccceeeEEeecCC-ceEEeeeccceEEEEEccCccc--------cccccccccccccccccCCcceeee
Confidence 34444444 477899999999877 6899999999999999998543 4557789999999999999983344
Q ss_pred EecCCC-eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc----cccC
Q 015484 184 SGSHDN-KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV----KAHE 258 (406)
Q Consensus 184 s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~ 258 (406)
+++... -..+|++.... .+.+.+ ..-.++.|+.. ...-+.|+......+||+.++..+.++ .+..
T Consensus 1161 sss~S~PlsaLW~~~s~~-----~~~Hsf----~ed~~vkFsn~-~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~ 1230 (1516)
T KOG1832|consen 1161 SSSSSSPLSALWDASSTG-----GPRHSF----DEDKAVKFSNS-LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSS 1230 (1516)
T ss_pred eccccCchHHHhcccccc-----Cccccc----cccceeehhhh-HHHHHhcccccceEEEecccCcHHHHhcCcchhhh
Confidence 443333 46789987621 122222 23456788752 233344555567899999999887764 1222
Q ss_pred CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 015484 259 KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI 335 (406)
Q Consensus 259 ~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~ 335 (406)
..-++..|+|... +++ .|| .+||.|... .++.|...+.. ..=.|+|.|.. ++.-+ .|||+++.
T Consensus 1231 y~~n~a~FsP~D~-LIl---ndG--vLWDvR~~~-aIh~FD~ft~~-~~G~FHP~g~e-VIINS-----EIwD~RTF 1293 (1516)
T KOG1832|consen 1231 YSNNLAHFSPCDT-LIL---NDG--VLWDVRIPE-AIHRFDQFTDY-GGGGFHPSGNE-VIINS-----EIWDMRTF 1293 (1516)
T ss_pred hhccccccCCCcc-eEe---eCc--eeeeeccHH-HHhhhhhheec-ccccccCCCce-EEeec-----hhhhhHHH
Confidence 3337788999988 553 455 479999863 36666543322 22369999975 44443 48999874
No 317
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=1.3e-05 Score=76.00 Aligned_cols=143 Identities=18% Similarity=0.261 Sum_probs=100.1
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC----CCCeEEEecCCCeEEEEeCCCccC
Q 015484 126 QKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF----KEGYLVSGSHDNKICLWDVSALAQ 201 (406)
Q Consensus 126 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~ 201 (406)
.| .++++|+.||+|.|-.+.+... ...+ ....++.+|+++|+ ....+++|+.-| +.++.-+-.+.
T Consensus 82 ~G-ey~asCS~DGkv~I~sl~~~~~--------~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn 150 (846)
T KOG2066|consen 82 EG-EYVASCSDDGKVVIGSLFTDDE--------ITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN 150 (846)
T ss_pred CC-ceEEEecCCCcEEEeeccCCcc--------ceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC
Confidence 45 6899999999999999887432 2222 34568899999997 223799999988 77775433222
Q ss_pred CceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCe------eEEEecCCCCcEEE
Q 015484 202 DKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEV------NYLSFNPYNEWVLA 275 (406)
Q Consensus 202 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v------~~i~~~~~~~~~l~ 275 (406)
... .......++|.++.|. ++++|-++++| |++||+.+++.+..+......+ ..+.|.+... |+
T Consensus 151 k~~----v~l~~~eG~I~~i~W~---g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~--LV 220 (846)
T KOG2066|consen 151 KDS----VVLSEGEGPIHSIKWR---GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR--LV 220 (846)
T ss_pred ccc----eeeecCccceEEEEec---CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe--EE
Confidence 111 1344567899999996 78998888777 9999999988777664333333 3567776654 66
Q ss_pred EEeCCCcEEEEeCCC
Q 015484 276 TASSDTTVALFDMRK 290 (406)
Q Consensus 276 ~~~~dg~i~vwd~~~ 290 (406)
.|=.| +|+|..++.
T Consensus 221 IGW~d-~v~i~~I~~ 234 (846)
T KOG2066|consen 221 IGWGD-SVKICSIKK 234 (846)
T ss_pred EecCC-eEEEEEEec
Confidence 66544 788888873
No 318
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.50 E-value=9.3e-06 Score=74.70 Aligned_cols=80 Identities=14% Similarity=0.189 Sum_probs=65.7
Q ss_pred EEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC
Q 015484 108 IAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 108 ~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
.+..+++++.|.|++++|+. ..|+.|+.||.|.+||.... ...+....-..+.++|+|+|. .+++|+.
T Consensus 252 svtsipL~s~v~~ca~sp~E-~kLvlGC~DgSiiLyD~~~~----------~t~~~ka~~~P~~iaWHp~ga-i~~V~s~ 319 (545)
T PF11768_consen 252 SVTSIPLPSQVICCARSPSE-DKLVLGCEDGSIILYDTTRG----------VTLLAKAEFIPTLIAWHPDGA-IFVVGSE 319 (545)
T ss_pred EEEEEecCCcceEEecCccc-ceEEEEecCCeEEEEEcCCC----------eeeeeeecccceEEEEcCCCc-EEEEEcC
Confidence 34567899999999999998 57889999999999999773 222333445578999999998 9999999
Q ss_pred CCeEEEEeCCCc
Q 015484 188 DNKICLWDVSAL 199 (406)
Q Consensus 188 dg~i~iwd~~~~ 199 (406)
.|.+.+||+.-.
T Consensus 320 qGelQ~FD~ALs 331 (545)
T PF11768_consen 320 QGELQCFDMALS 331 (545)
T ss_pred CceEEEEEeecC
Confidence 999999998643
No 319
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.41 E-value=0.00044 Score=58.87 Aligned_cols=204 Identities=13% Similarity=0.193 Sum_probs=112.4
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
+-...+..|+|.|+...++|+....+.|..++.+.. ......+.+ .+..-+|++..++. ++++--.++.+.
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~-------vlr~i~l~g-~~D~EgI~y~g~~~-~vl~~Er~~~L~ 89 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGK-------VLRRIPLDG-FGDYEGITYLGNGR-YVLSEERDQRLY 89 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---------EEEEEE-SS--SSEEEEEE-STTE-EEEEETTTTEEE
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCC-------EEEEEeCCC-CCCceeEEEECCCE-EEEEEcCCCcEE
Confidence 344679999999987788899888999888887531 111222333 34567888886665 666555689999
Q ss_pred EEeCCCccCCceeeeeee-----eeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCC---Cccccc--------ccc
Q 015484 193 LWDVSALAQDKVIDAMHV-----YEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT---NQTQQR--------VKA 256 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~-----~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~---~~~~~~--------~~~ 256 (406)
++++.............. ...++..+..++|+|.+++++ .+-...-..+|.++. ...+.. ...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~-v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (248)
T PF06977_consen 90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLF-VAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL 168 (248)
T ss_dssp EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEE-EEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEE-EEeCCCChhhEEEccccCccceeeccccccccccc
Confidence 999854332211111111 123456799999999655555 556666666776654 111111 122
Q ss_pred cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCC---------CCeEEEEEcCCCCCEEEEEeCCCcE
Q 015484 257 HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHT---------EEVFQVEWDPNHETVLASSADDRRL 327 (406)
Q Consensus 257 ~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~---------~~v~~i~~~p~~~~~l~s~~~dg~i 327 (406)
....+.+++++|....+++....+..|..+|.. ++ ++..+.-.. ...-.|+|.++|. |...++-+..
T Consensus 169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-G~-~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~--LYIvsEpNlf 244 (248)
T PF06977_consen 169 FVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ-GR-VVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN--LYIVSEPNLF 244 (248)
T ss_dssp -SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT----EEEEETTTEE
T ss_pred eeccccceEEcCCCCeEEEEECCCCeEEEECCC-CC-EEEEEEeCCcccCcccccCCccEEEECCCCC--EEEEcCCceE
Confidence 345678999999887788888888899999944 33 233333222 3578899999985 4455555555
Q ss_pred EEE
Q 015484 328 MVW 330 (406)
Q Consensus 328 ~iw 330 (406)
++|
T Consensus 245 y~f 247 (248)
T PF06977_consen 245 YRF 247 (248)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
No 320
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.34 E-value=0.00031 Score=60.81 Aligned_cols=212 Identities=13% Similarity=0.134 Sum_probs=127.4
Q ss_pred CeeEEEecCCCCCeEEEecCCCe-EEEEeCCCccCCceeee--eeeeeccCccEEEEEeeCCCCCEEEEE-----ecCCc
Q 015484 168 EGYGLSWSPFKEGYLVSGSHDNK-ICLWDVSALAQDKVIDA--MHVYEAHESVVEDVSWHLKNENLFGSA-----GDDCQ 239 (406)
Q Consensus 168 ~v~~l~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~--~~~~~~~~~~i~~i~~~p~~~~~l~~~-----~~dg~ 239 (406)
...+++.+|.....++.+-.-|+ ..+||..++.....+.. -..|.+| -+|++ ++++|++. ...|.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~-dG~~LytTEnd~~~g~G~ 78 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSP-DGRLLYTTENDYETGRGV 78 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcC-CCCEEEEeccccCCCcEE
Confidence 34567788865546666766664 67888888754332211 1223333 46898 56666554 34688
Q ss_pred EEEEECC-CCcccccccccCCCeeEEEecCCCCcEEEEEe------------------CCCcEEEEeCCCCCCCcEE--e
Q 015484 240 LMIWDLR-TNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS------------------SDTTVALFDMRKMTVPLHI--L 298 (406)
Q Consensus 240 i~i~d~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~------------------~dg~i~vwd~~~~~~~~~~--~ 298 (406)
|-+||.. +-+.+..+..+.-.-..+.+.|+++ .|+++. .+..+...|.+++.. +.. +
T Consensus 79 IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~-tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~l-l~q~~L 156 (305)
T PF07433_consen 79 IGVYDAARGYRRIGEFPSHGIGPHELLLMPDGE-TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGAL-LEQVEL 156 (305)
T ss_pred EEEEECcCCcEEEeEecCCCcChhhEEEcCCCC-EEEEEcCCCccCcccCceecChhhcCCceEEEecCCCce-eeeeec
Confidence 9999998 4555667776776677888999997 455442 123444455555443 222 3
Q ss_pred --cCCCCCeEEEEEcCCCCCEEEEEeCCCc-------EEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCC
Q 015484 299 --SSHTEEVFQVEWDPNHETVLASSADDRR-------LMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNK 369 (406)
Q Consensus 299 --~~h~~~v~~i~~~p~~~~~l~s~~~dg~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 369 (406)
..|...|..+++.++|. +++..-..|. |-+++.... ..... .+... ...-...+-+|++++
T Consensus 157 p~~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g~~---~~~~~---~p~~~---~~~l~~Y~gSIa~~~ 226 (305)
T PF07433_consen 157 PPDLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRGGA---LRLLP---APEEQ---WRRLNGYIGSIAADR 226 (305)
T ss_pred CccccccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCCCc---ceecc---CChHH---HHhhCCceEEEEEeC
Confidence 34777899999999985 3333322221 222222110 00000 00000 112345789999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCcccCCCc
Q 015484 370 NDPWVISSVADDNTVQVWQMTDSIYRDDD 398 (406)
Q Consensus 370 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 398 (406)
++.++.+|+-.-|.+.+||..++.+....
T Consensus 227 ~g~~ia~tsPrGg~~~~~d~~tg~~~~~~ 255 (305)
T PF07433_consen 227 DGRLIAVTSPRGGRVAVWDAATGRLLGSV 255 (305)
T ss_pred CCCEEEEECCCCCEEEEEECCCCCEeecc
Confidence 99977788888899999999999876543
No 321
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.32 E-value=0.00022 Score=71.10 Aligned_cols=203 Identities=13% Similarity=0.275 Sum_probs=127.8
Q ss_pred CCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEEC
Q 015484 166 DKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDL 245 (406)
Q Consensus 166 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~ 245 (406)
...|.++.|..+.. .++.+..+|.|.+-|..+... .....-...|.+++|+| +...++..+..+++.+.+-
T Consensus 68 d~~i~s~~fl~d~~-~i~v~~~~G~iilvd~et~~~-------eivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~ 138 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTN-SICVITALGDIILVDPETLEL-------EIVGNVDNGISAASWSP-DEELLALITGRQTLLFMTK 138 (1265)
T ss_pred CcceEEEEEecccc-eEEEEecCCcEEEEcccccce-------eeeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEec
Confidence 36899999999887 788888899999998777432 22223456899999999 6788888887777766432
Q ss_pred C----CCccc-------------------ccccc---------------------cCCCeeEEEecCCCCcEEEEE----
Q 015484 246 R----TNQTQ-------------------QRVKA---------------------HEKEVNYLSFNPYNEWVLATA---- 277 (406)
Q Consensus 246 ~----~~~~~-------------------~~~~~---------------------~~~~v~~i~~~~~~~~~l~~~---- 277 (406)
. ..+.+ ..+.+ ..+.=++|+|--+|+ ++|+.
T Consensus 139 ~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~-~fAVs~~~~ 217 (1265)
T KOG1920|consen 139 DFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGE-YFAVSFVES 217 (1265)
T ss_pred cccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCc-EEEEEEEec
Confidence 0 00000 01110 011124589999998 77773
Q ss_pred -eCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEe---CCCcEEEEeCCCCCcccccccccCCCCeeEE
Q 015484 278 -SSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSA---DDRRLMVWDLNRIGDEQLELDAEDGPPELLF 353 (406)
Q Consensus 278 -~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 353 (406)
.....|+|||.. +.. -..-....+.-.+++|-|.|. ++++-. .|+.|.+|.-+.... .....
T Consensus 218 ~~~~RkirV~drE-g~L-ns~se~~~~l~~~LsWkPsgs-~iA~iq~~~sd~~IvffErNGL~h-----------g~f~l 283 (1265)
T KOG1920|consen 218 ETGTRKIRVYDRE-GAL-NSTSEPVEGLQHSLSWKPSGS-LIAAIQCKTSDSDIVFFERNGLRH-----------GEFVL 283 (1265)
T ss_pred cCCceeEEEeccc-chh-hcccCcccccccceeecCCCC-eEeeeeecCCCCcEEEEecCCccc-----------ccccc
Confidence 223789999976 221 111112233456799999886 576643 366788887654221 11111
Q ss_pred EecCCCCCeeeEEeCCCCCcEEEE---EeCCCcEEEEeCCCcc
Q 015484 354 SHGGHKAKISDFSWNKNDPWVISS---VADDNTVQVWQMTDSI 393 (406)
Q Consensus 354 ~~~~h~~~v~~~~~s~~~~~~l~s---~~~dg~i~iw~~~~~~ 393 (406)
........|..++|+.++. +|+. ......|++|-+.+-.
T Consensus 284 ~~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 284 PFPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred CCcccccchheeeecCCCC-ceeeeecccccceEEEEEecCeE
Confidence 1222233489999999998 6766 4445559999887653
No 322
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.30 E-value=0.00039 Score=64.26 Aligned_cols=227 Identities=14% Similarity=0.054 Sum_probs=122.3
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeee
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAM 208 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 208 (406)
..+++++.+|.++.+|..++... ..... ...+.+.... .+. .++.++.+|.|..||..+++........
T Consensus 106 ~~v~v~~~~g~l~ald~~tG~~~--------W~~~~-~~~~~~~p~v-~~~-~v~v~~~~g~l~a~d~~tG~~~W~~~~~ 174 (377)
T TIGR03300 106 GLVFVGTEKGEVIALDAEDGKEL--------WRAKL-SSEVLSPPLV-ANG-LVVVRTNDGRLTALDAATGERLWTYSRV 174 (377)
T ss_pred CEEEEEcCCCEEEEEECCCCcEe--------eeecc-CceeecCCEE-ECC-EEEEECCCCeEEEEEcCCCceeeEEccC
Confidence 35677888999999998774331 11111 1112111111 134 6777888999999999887653322110
Q ss_pred eeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccC----CC---eeEEEecC--CCCcEEEEEeC
Q 015484 209 HVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHE----KE---VNYLSFNP--YNEWVLATASS 279 (406)
Q Consensus 209 ~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~---v~~i~~~~--~~~~~l~~~~~ 279 (406)
........ ..+.... + ..++.+..+|.+..+|+++++.+....... .. +..+.-+| .+. .+.+++.
T Consensus 175 ~~~~~~~~-~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~-~vy~~~~ 249 (377)
T TIGR03300 175 TPALTLRG-SASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGG-QVYAVSY 249 (377)
T ss_pred CCceeecC-CCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECC-EEEEEEc
Confidence 00000000 0111122 2 356678888999999999887654331100 00 00010111 234 6777888
Q ss_pred CCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCC-
Q 015484 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH- 358 (406)
Q Consensus 280 dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h- 358 (406)
+|.+..||..+++. +-.... . ....... .+. .++.++.||.+..+|..+... +......
T Consensus 250 ~g~l~a~d~~tG~~-~W~~~~-~-~~~~p~~--~~~-~vyv~~~~G~l~~~d~~tG~~--------------~W~~~~~~ 309 (377)
T TIGR03300 250 QGRVAALDLRSGRV-LWKRDA-S-SYQGPAV--DDN-RLYVTDADGVVVALDRRSGSE--------------LWKNDELK 309 (377)
T ss_pred CCEEEEEECCCCcE-EEeecc-C-CccCceE--eCC-EEEEECCCCeEEEEECCCCcE--------------EEcccccc
Confidence 99999999988654 322221 1 1112222 233 477778899999999976322 1111000
Q ss_pred CCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 359 KAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 359 ~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
......... .+. .+++++.+|.|++++..++..
T Consensus 310 ~~~~ssp~i--~g~-~l~~~~~~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 310 YRQLTAPAV--VGG-YLVVGDFEGYLHWLSREDGSF 342 (377)
T ss_pred CCccccCEE--ECC-EEEEEeCCCEEEEEECCCCCE
Confidence 011111122 234 577888999999999987754
No 323
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.29 E-value=0.00055 Score=58.73 Aligned_cols=183 Identities=13% Similarity=0.048 Sum_probs=105.2
Q ss_pred CCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-cc
Q 015484 178 KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KA 256 (406)
Q Consensus 178 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~ 256 (406)
+. .+++++.++.|..||..+++....... ...+...... .+..++.++.++.++.+|+++++.+... ..
T Consensus 36 ~~-~v~~~~~~~~l~~~d~~tG~~~W~~~~-------~~~~~~~~~~--~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~ 105 (238)
T PF13360_consen 36 GG-RVYVASGDGNLYALDAKTGKVLWRFDL-------PGPISGAPVV--DGGRVYVGTSDGSLYALDAKTGKVLWSIYLT 105 (238)
T ss_dssp TT-EEEEEETTSEEEEEETTTSEEEEEEEC-------SSCGGSGEEE--ETTEEEEEETTSEEEEEETTTSCEEEEEEE-
T ss_pred CC-EEEEEcCCCEEEEEECCCCCEEEEeec-------cccccceeee--cccccccccceeeeEecccCCcceeeeeccc
Confidence 55 788888999999999988764322211 1111111111 2445556668889999999999987763 22
Q ss_pred cC---CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCC----------e-EEEEEcCCCCCEEEEEe
Q 015484 257 HE---KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEE----------V-FQVEWDPNHETVLASSA 322 (406)
Q Consensus 257 ~~---~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~----------v-~~i~~~p~~~~~l~s~~ 322 (406)
.. ...........+. .++++..++.|..+|+++++. +......... + ..+.+. ++ .+..++
T Consensus 106 ~~~~~~~~~~~~~~~~~~-~~~~~~~~g~l~~~d~~tG~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~~~~ 180 (238)
T PF13360_consen 106 SSPPAGVRSSSSPAVDGD-RLYVGTSSGKLVALDPKTGKL-LWKYPVGEPRGSSPISSFSDINGSPVIS-DG--RVYVSS 180 (238)
T ss_dssp SSCTCSTB--SEEEEETT-EEEEEETCSEEEEEETTTTEE-EEEEESSTT-SS--EEEETTEEEEEECC-TT--EEEEEC
T ss_pred cccccccccccCceEecC-EEEEEeccCcEEEEecCCCcE-EEEeecCCCCCCcceeeecccccceEEE-CC--EEEEEc
Confidence 11 1111122222255 677888899999999998765 4444333321 1 222333 33 366666
Q ss_pred CCCc-EEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 323 DDRR-LMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 323 ~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.++. +.+ |+.+. +.+.... ...+..+ ....+. .++.++.++.|..||+.++..
T Consensus 181 ~~g~~~~~-d~~tg--------------~~~w~~~--~~~~~~~-~~~~~~-~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 181 GDGRVVAV-DLATG--------------EKLWSKP--ISGIYSL-PSVDGG-TLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp CTSSEEEE-ETTTT--------------EEEEEEC--SS-ECEC-EECCCT-EEEEEETTTEEEEEETTTTEE
T ss_pred CCCeEEEE-ECCCC--------------CEEEEec--CCCccCC-ceeeCC-EEEEEeCCCEEEEEECCCCCE
Confidence 6775 555 88872 2222222 1223331 234555 466666899999999999853
No 324
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.29 E-value=0.00017 Score=70.70 Aligned_cols=137 Identities=14% Similarity=0.124 Sum_probs=91.9
Q ss_pred cCCCeEEEEeCCCccCCceeeeeeeeeccCc-cEEEEEeeC----CCCCEEEEEecCCcEEEEECCCCc--cccc-c--c
Q 015484 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHES-VVEDVSWHL----KNENLFGSAGDDCQLMIWDLRTNQ--TQQR-V--K 255 (406)
Q Consensus 186 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~i~~i~~~p----~~~~~l~~~~~dg~i~i~d~~~~~--~~~~-~--~ 255 (406)
.....|.-.|++.++.. ..+..+.. +|.+++-.. ..+.--+.|-.+..+..||+|-.. .+.. . -
T Consensus 501 ~~~~~ly~mDLe~GKVV------~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y 574 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVV------EEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY 574 (794)
T ss_pred CCCCceEEEecCCCcEE------EEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc
Confidence 45578888999988643 33343433 355554221 112233467778889999999643 2211 1 1
Q ss_pred ccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 015484 256 AHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLN 333 (406)
Q Consensus 256 ~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~ 333 (406)
.......|++-..+| .||+|+.+|.|++||- .+......+.+-..+|.+|..+.+|+++|+|| +..+.+++..
T Consensus 575 ~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t~ 647 (794)
T PF08553_consen 575 SSKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDTL 647 (794)
T ss_pred ccCCCceEEEecCCc--eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEEe
Confidence 234567788887776 5999999999999994 33444455667788999999999999877666 5678888864
No 325
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.28 E-value=8.2e-05 Score=68.10 Aligned_cols=246 Identities=11% Similarity=0.116 Sum_probs=125.2
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccc-----------------------------------cCCCCCcee
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQ-----------------------------------QDDCDPDLR 161 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~-----------------------------------~~~~~~~~~ 161 (406)
.|+.+.|.++. .-||+|...|.|.||.....+... .....|...
T Consensus 3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTT-TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 58899999987 469999999999999875432211 001223344
Q ss_pred eeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeee---eeccCccEEEEEeeC----CC---CCEE
Q 015484 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHV---YEAHESVVEDVSWHL----KN---ENLF 231 (406)
Q Consensus 162 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~i~~i~~~p----~~---~~~l 231 (406)
+....++|++++.|.-| +++.|..+|.+.|.|++.......- .+.. -......++++.|.. .+ .-.+
T Consensus 82 ~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp E---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred eeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeec-cccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 44557899999998543 8999999999999999765322110 0111 111234677888752 11 2467
Q ss_pred EEEecCCcEEEEECCC-C--cccccc----cccCCCeeEEE-ecCC-C-------------------CcEEEEEeCCCcE
Q 015484 232 GSAGDDCQLMIWDLRT-N--QTQQRV----KAHEKEVNYLS-FNPY-N-------------------EWVLATASSDTTV 283 (406)
Q Consensus 232 ~~~~~dg~i~i~d~~~-~--~~~~~~----~~~~~~v~~i~-~~~~-~-------------------~~~l~~~~~dg~i 283 (406)
++|++.|.+.+|.+.- . .....+ ..+.++|..|. ++.+ | +.++++++ +..+
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-e~~i 237 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-ESDI 237 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-ccce
Confidence 7889999999998752 1 111111 23455555554 3222 1 11444444 5679
Q ss_pred EEEeCCCCCCCcEEecCCCCCeEEEEEcC----CCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCC
Q 015484 284 ALFDMRKMTVPLHILSSHTEEVFQVEWDP----NHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHK 359 (406)
Q Consensus 284 ~vwd~~~~~~~~~~~~~h~~~v~~i~~~p----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 359 (406)
+++...+.+..-+.+ ........+.+-+ .+...|++-..+|.|++|.+....+..... .......
T Consensus 238 rv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~----------l~~~~d~ 306 (395)
T PF08596_consen 238 RVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVS----------LPPPLDS 306 (395)
T ss_dssp EEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-----------SS---H
T ss_pred EEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhccc----------CCCcccc
Confidence 999988765423333 2222333444531 233468888999999999998743221100 0001122
Q ss_pred CCeeeEEeCCCCCcEEEEEe
Q 015484 360 AKISDFSWNKNDPWVISSVA 379 (406)
Q Consensus 360 ~~v~~~~~s~~~~~~l~s~~ 379 (406)
..+...+++++|. +++-.+
T Consensus 307 ~~~~~ssis~~Gd-i~~~~g 325 (395)
T PF08596_consen 307 RRLSSSSISRNGD-IFYWTG 325 (395)
T ss_dssp HHHTT-EE-TTS--EEEE-S
T ss_pred ccccccEECCCCC-EEEEeC
Confidence 3455677888888 455544
No 326
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.27 E-value=0.00043 Score=64.00 Aligned_cols=220 Identities=12% Similarity=0.004 Sum_probs=118.7
Q ss_pred EEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCe-----eEEEecCCCCCeEEEecCCCeEEEEeCCCccCCce
Q 015484 130 LVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEG-----YGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKV 204 (406)
Q Consensus 130 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v-----~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 204 (406)
.++.++.+|.++.||..++.. ........... .+.... +. .++.+..+|.+..+|..+++....
T Consensus 147 ~v~v~~~~g~l~a~d~~tG~~--------~W~~~~~~~~~~~~~~~sp~~~--~~-~v~~~~~~g~v~ald~~tG~~~W~ 215 (377)
T TIGR03300 147 LVVVRTNDGRLTALDAATGER--------LWTYSRVTPALTLRGSASPVIA--DG-GVLVGFAGGKLVALDLQTGQPLWE 215 (377)
T ss_pred EEEEECCCCeEEEEEcCCCce--------eeEEccCCCceeecCCCCCEEE--CC-EEEEECCCCEEEEEEccCCCEeee
Confidence 466677899999999987432 11111111100 011111 33 678888889999999988754321
Q ss_pred eeeeeeeeccC--ccEEEEEeeC-CCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCC
Q 015484 205 IDAMHVYEAHE--SVVEDVSWHL-KNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT 281 (406)
Q Consensus 205 ~~~~~~~~~~~--~~i~~i~~~p-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg 281 (406)
... ....+.. .....+.-+| ..+..+++++.+|.++.+|.++++.+..... ........ .+. .+++++.+|
T Consensus 216 ~~~-~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~--~~~~~p~~--~~~-~vyv~~~~G 289 (377)
T TIGR03300 216 QRV-ALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA--SSYQGPAV--DDN-RLYVTDADG 289 (377)
T ss_pred ecc-ccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc--CCccCceE--eCC-EEEEECCCC
Confidence 110 0000000 0000000011 0234566778899999999999876554431 11112222 344 677788899
Q ss_pred cEEEEeCCCCCCCcEEecC-CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCC
Q 015484 282 TVALFDMRKMTVPLHILSS-HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKA 360 (406)
Q Consensus 282 ~i~vwd~~~~~~~~~~~~~-h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 360 (406)
.+..+|..+++. +-.... .......... .+. .+++++.+|.|.++|..+. +.+.....+..
T Consensus 290 ~l~~~d~~tG~~-~W~~~~~~~~~~ssp~i--~g~-~l~~~~~~G~l~~~d~~tG--------------~~~~~~~~~~~ 351 (377)
T TIGR03300 290 VVVALDRRSGSE-LWKNDELKYRQLTAPAV--VGG-YLVVGDFEGYLHWLSREDG--------------SFVARLKTDGS 351 (377)
T ss_pred eEEEEECCCCcE-EEccccccCCccccCEE--ECC-EEEEEeCCCEEEEEECCCC--------------CEEEEEEcCCC
Confidence 999999987654 322211 1111222222 233 5888999999999998762 34444443332
Q ss_pred Ce-eeEEeCCCCCcEEEEEeCCCcEEEE
Q 015484 361 KI-SDFSWNKNDPWVISSVADDNTVQVW 387 (406)
Q Consensus 361 ~v-~~~~~s~~~~~~l~s~~~dg~i~iw 387 (406)
.+ ....+. ++. |+.++.||.|..+
T Consensus 352 ~~~~sp~~~-~~~--l~v~~~dG~l~~~ 376 (377)
T TIGR03300 352 GIASPPVVV-GDG--LLVQTRDGDLYAF 376 (377)
T ss_pred ccccCCEEE-CCE--EEEEeCCceEEEe
Confidence 22 222222 333 5677789988776
No 327
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.24 E-value=2.7e-05 Score=74.38 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=60.7
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeC
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV 196 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 196 (406)
.+++++|+|.. .+||.|-..|.+.+|...+.. .......|..+|..+.||++|. .|+++..-|.+.+|..
T Consensus 61 hatSLCWHpe~-~vLa~gwe~g~~~v~~~~~~e--------~htv~~th~a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~ 130 (1416)
T KOG3617|consen 61 HATSLCWHPEE-FVLAQGWEMGVSDVQKTNTTE--------THTVVETHPAPIQGLDWSHDGT-VLMTLDNPGSVHLWRY 130 (1416)
T ss_pred ehhhhccChHH-HHHhhccccceeEEEecCCce--------eeeeccCCCCCceeEEecCCCC-eEEEcCCCceeEEEEe
Confidence 46679999987 789999999999999988732 1233446999999999999999 9999999999999987
Q ss_pred CC
Q 015484 197 SA 198 (406)
Q Consensus 197 ~~ 198 (406)
..
T Consensus 131 d~ 132 (1416)
T KOG3617|consen 131 DV 132 (1416)
T ss_pred ee
Confidence 63
No 328
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.23 E-value=6.6e-05 Score=73.53 Aligned_cols=146 Identities=14% Similarity=0.126 Sum_probs=99.9
Q ss_pred CCCCEEEEE-ecCCcEEEEECCCCcccccccccCCC-eeEEEecC-----CCCcEEEEEeCCCcEEEEeCCCCCCCcEEe
Q 015484 226 KNENLFGSA-GDDCQLMIWDLRTNQTQQRVKAHEKE-VNYLSFNP-----YNEWVLATASSDTTVALFDMRKMTVPLHIL 298 (406)
Q Consensus 226 ~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~i~~~~-----~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 298 (406)
.+.++++.- .....|+-.|+..|+.+.....+... |..++-.. ... -.+.|-.+..+..||.|-....+..-
T Consensus 491 ~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e-~tflGls~n~lfriDpR~~~~k~v~~ 569 (794)
T PF08553_consen 491 QDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNE-QTFLGLSDNSLFRIDPRLSGNKLVDS 569 (794)
T ss_pred cccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCC-ceEEEECCCceEEeccCCCCCceeec
Confidence 345555443 45678999999999999888766543 55443221 122 34567778899999999754322221
Q ss_pred c----CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcE
Q 015484 299 S----SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWV 374 (406)
Q Consensus 299 ~----~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~ 374 (406)
. .......|++-+.+| .||.|+.+|.||+||--. . .....+.+-..+|..|..+.+|+|+
T Consensus 570 ~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g--~------------~AKT~lp~lG~pI~~iDvt~DGkwi 633 (794)
T PF08553_consen 570 QSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLG--K------------RAKTALPGLGDPIIGIDVTADGKWI 633 (794)
T ss_pred cccccccCCCceEEEecCCc--eEEEEeCCCcEEeecccc--h------------hhhhcCCCCCCCeeEEEecCCCcEE
Confidence 1 234467888888777 499999999999999422 1 1222334556899999999999998
Q ss_pred EEEEeCCCcEEEEeCC
Q 015484 375 ISSVADDNTVQVWQMT 390 (406)
Q Consensus 375 l~s~~~dg~i~iw~~~ 390 (406)
|||+ +..|.+++..
T Consensus 634 laTc--~tyLlLi~t~ 647 (794)
T PF08553_consen 634 LATC--KTYLLLIDTL 647 (794)
T ss_pred EEee--cceEEEEEEe
Confidence 8886 5678888763
No 329
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.19 E-value=0.00015 Score=67.07 Aligned_cols=163 Identities=14% Similarity=0.179 Sum_probs=99.2
Q ss_pred eeCCCCCeeEEEecCCCCCeEEEe--cCC-CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC
Q 015484 162 LKGHDKEGYGLSWSPFKEGYLVSG--SHD-NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC 238 (406)
Q Consensus 162 ~~~h~~~v~~l~~~~~~~~~l~s~--~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg 238 (406)
+..-...+..-+|+|++..+.... ... ..+.+++++.+....... + .+.-..-+|+|++..++++...||
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~----~---~g~~~~P~fspDG~~l~f~~~rdg 260 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN----F---NGNNGAPAFSPDGSKLAFSSSRDG 260 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec----c---CCccCCccCCCCCCEEEEEECCCC
Confidence 333445667778999887322222 122 458999999876543321 2 233344579998777777777777
Q ss_pred c--EEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCc--EEEEeCCCCCCCcEEecCCCCCeEEEEEcCCC
Q 015484 239 Q--LMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTT--VALFDMRKMTVPLHILSSHTEEVFQVEWDPNH 314 (406)
Q Consensus 239 ~--i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~--i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~ 314 (406)
. |.++|+..+.. ..+....+.-..-.|+|+|++++++.+..|. |.++|+.... ...+......-..-.|+|+|
T Consensus 261 ~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~--~~riT~~~~~~~~p~~SpdG 337 (425)
T COG0823 261 SPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ--VTRLTFSGGGNSNPVWSPDG 337 (425)
T ss_pred CccEEEEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc--eeEeeccCCCCcCccCCCCC
Confidence 6 55567766653 3343333333466899999977777777774 5555555433 34444333333377899999
Q ss_pred CCEEEEEeCCCc--EEEEeCCC
Q 015484 315 ETVLASSADDRR--LMVWDLNR 334 (406)
Q Consensus 315 ~~~l~s~~~dg~--i~iwd~~~ 334 (406)
+.++.....+|. |.+.|+..
T Consensus 338 ~~i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 338 DKIVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred CEEEEEeccCCceeeEEeccCC
Confidence 975555544555 55555554
No 330
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.02 E-value=0.00029 Score=67.62 Aligned_cols=110 Identities=15% Similarity=0.286 Sum_probs=80.2
Q ss_pred eeEEEEcCCCCcEEEEEeC----CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 118 VNRARCMPQKPNLVGTKTS----SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 118 v~~i~~~p~~~~~l~~~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
-+-+.|+|..| ++|+++. .|.|-||--... .....+.+.| +++++|+|..- .|+.|-.-|.+.+
T Consensus 18 sti~SWHPseP-lfAVA~fS~er~GSVtIfadtGE-------Pqr~Vt~P~h---atSLCWHpe~~-vLa~gwe~g~~~v 85 (1416)
T KOG3617|consen 18 STISSWHPSEP-LFAVASFSPERGGSVTIFADTGE-------PQRDVTYPVH---ATSLCWHPEEF-VLAQGWEMGVSDV 85 (1416)
T ss_pred ccccccCCCCc-eeEEEEecCCCCceEEEEecCCC-------CCccccccee---hhhhccChHHH-HHhhccccceeEE
Confidence 34457999886 5766653 578888865442 1112233333 45799999776 8999999999999
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECC
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR 246 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~ 246 (406)
|..++.+.. .....|+.+|..+.|++ ++..++++..-|.+.+|...
T Consensus 86 ~~~~~~e~h------tv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 86 QKTNTTETH------TVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred EecCCceee------eeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence 998775432 22346899999999999 67888899999999999776
No 331
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.98 E-value=0.00041 Score=65.29 Aligned_cols=142 Identities=13% Similarity=0.217 Sum_probs=95.2
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
..|.--++...+ .+++.|+..|.+++|+...+... .....+-.+.+..+..+++.. ++|+|+..|.|.++-
T Consensus 34 ~~v~lTc~dst~-~~l~~GsS~G~lyl~~R~~~~~~-------~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~q 104 (726)
T KOG3621|consen 34 ARVKLTCVDATE-EYLAMGSSAGSVYLYNRHTGEMR-------KLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQ 104 (726)
T ss_pred ceEEEEEeecCC-ceEEEecccceEEEEecCchhhh-------cccccCccceEEEEEecchhH-hhhhhcCCceEEeeh
Confidence 334444455555 68999999999999998874321 222223445566677888777 899999999999999
Q ss_pred CCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCc----ccccccccCCCeeEEEec
Q 015484 196 VSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ----TQQRVKAHEKEVNYLSFN 267 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~v~~i~~~ 267 (406)
++........-....-..|+..|++++|++ ++..+.+|...|.|.+-.+.... ..+.+....+.|-.+...
T Consensus 105 l~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 105 LNKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred hhccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 887443322211122234788999999998 67888899999999998887621 122333345666666554
No 332
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.97 E-value=1.5e-05 Score=76.37 Aligned_cols=166 Identities=13% Similarity=0.202 Sum_probs=117.0
Q ss_pred eeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCC-cE
Q 015484 205 IDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT-TV 283 (406)
Q Consensus 205 ~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg-~i 283 (406)
++....+..|....+|++|+- +.+.++.|+..|.|++|++.+|........|.+.|+-+.-+.+|..+|.+.+... -.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 344566777888999999997 7888999999999999999999999999999999999999999995555444444 56
Q ss_pred EEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCee
Q 015484 284 ALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKIS 363 (406)
Q Consensus 284 ~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 363 (406)
.+|++.....+.+.+.. -.++.|+..... -+.|.......|||+.+....++.+... .+....-.
T Consensus 1170 aLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~-r~~gt~~d~a~~YDvqT~~~l~tylt~~----------~~~~y~~n 1234 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDE----DKAVKFSNSLQF-RALGTEADDALLYDVQTCSPLQTYLTDT----------VTSSYSNN 1234 (1516)
T ss_pred HHhccccccCccccccc----cceeehhhhHHH-HHhcccccceEEEecccCcHHHHhcCcc----------hhhhhhcc
Confidence 89999876666666654 356788776432 3444445678999999865444322111 11111225
Q ss_pred eEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 364 DFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 364 ~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.+.|+|+.. ++. +|| .+||+...
T Consensus 1235 ~a~FsP~D~-LIl---ndG--vLWDvR~~ 1257 (1516)
T KOG1832|consen 1235 LAHFSPCDT-LIL---NDG--VLWDVRIP 1257 (1516)
T ss_pred ccccCCCcc-eEe---eCc--eeeeeccH
Confidence 677888887 343 466 35777653
No 333
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.97 E-value=0.00077 Score=63.54 Aligned_cols=124 Identities=19% Similarity=0.187 Sum_probs=80.8
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCce-eeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDL-RLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
.+.+..+..+++. .++|.|+..|.|.|+.++...... ..... .-..|...|++++|++++. .+++|...|.|.+
T Consensus 76 ~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~p~~---~~~~t~~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~ 150 (726)
T KOG3621|consen 76 TGITCVRSVSSVE-YLVAAGTASGRVSVFQLNKELPRD---LDYVTPCDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVL 150 (726)
T ss_pred cceEEEEEecchh-HhhhhhcCCceEEeehhhccCCCc---ceeeccccccCCceEEEEEeccccc-EEeecCCCceEEE
Confidence 3555666677776 789999999999999998732211 11111 1123778999999999999 9999999999999
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCc
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ 249 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 249 (406)
-.++... ..+-..+.+....+.|-.+... ...+|++... ...+++++.++
T Consensus 151 ~~L~s~~--~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl~--r~~Lc~tE~et 200 (726)
T KOG3621|consen 151 TELDSRQ--AFLSKSQEILSEDSEIVQLDYL--QSYLLVSTLT--RCILCQTEAET 200 (726)
T ss_pred EEechhh--hhccccceeeccCcceEEeecc--cceehHhhhh--hhheeecchhH
Confidence 8887721 1111123334456778777765 3555554443 23455665443
No 334
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.94 E-value=0.0096 Score=50.82 Aligned_cols=204 Identities=15% Similarity=0.196 Sum_probs=108.8
Q ss_pred eeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcE
Q 015484 161 RLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQL 240 (406)
Q Consensus 161 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i 240 (406)
.+.+-...+.+|+|+|+.+.++++....+.|..++.+ ++. ++. ..+.+ .+....|++.. ++.++++--.++.+
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~v---lr~-i~l~g-~~D~EgI~y~g-~~~~vl~~Er~~~L 88 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKV---LRR-IPLDG-FGDYEGITYLG-NGRYVLSEERDQRL 88 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---E---EEE-EE-SS--SSEEEEEE-S-TTEEEEEETTTTEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCE---EEE-EeCCC-CCCceeEEEEC-CCEEEEEEcCCCcE
Confidence 3445556799999999876477777788888888864 322 221 11222 34577888873 44444444458899
Q ss_pred EEEECCCCcc------cccc-----cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCC--CCCCcEE--------ec
Q 015484 241 MIWDLRTNQT------QQRV-----KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRK--MTVPLHI--------LS 299 (406)
Q Consensus 241 ~i~d~~~~~~------~~~~-----~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~--------~~ 299 (406)
.++++..... ...+ ..++..+-.++|+|.+..++ ++-...-..+|.++. ....+.. ..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~-v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~ 167 (248)
T PF06977_consen 89 YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLF-VAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDK 167 (248)
T ss_dssp EEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEE-EEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT
T ss_pred EEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEE-EEeCCCChhhEEEccccCccceeecccccccccc
Confidence 9998843221 1111 23456688999999887444 455555666776654 1111111 11
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecC-C------CCCeeeEEeCCCCC
Q 015484 300 SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG-H------KAKISDFSWNKNDP 372 (406)
Q Consensus 300 ~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-h------~~~v~~~~~s~~~~ 372 (406)
.....+.+++++|....+++.+.....|.++|... .. .-...+.. . -...-.|+|.++|.
T Consensus 168 ~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G--~~-----------~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~ 234 (248)
T PF06977_consen 168 LFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQG--RV-----------VSSLSLDRGFHGLSKDIPQPEGIAFDPDGN 234 (248)
T ss_dssp --SS---EEEEETTTTEEEEEETTTTEEEEE-TT----E-----------EEEEE-STTGGG-SS---SEEEEEE-TT--
T ss_pred ceeccccceEEcCCCCeEEEEECCCCeEEEECCCC--CE-----------EEEEEeCCcccCcccccCCccEEEECCCCC
Confidence 23346889999999888888888999999999543 11 11122221 1 12467899999997
Q ss_pred cEEEEEeCCCcEEEE
Q 015484 373 WVISSVADDNTVQVW 387 (406)
Q Consensus 373 ~~l~s~~~dg~i~iw 387 (406)
+.+ .++-+..+++
T Consensus 235 -LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 235 -LYI-VSEPNLFYRF 247 (248)
T ss_dssp -EEE-EETTTEEEEE
T ss_pred -EEE-EcCCceEEEe
Confidence 444 4566666554
No 335
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.92 E-value=0.00048 Score=63.80 Aligned_cols=163 Identities=13% Similarity=0.192 Sum_probs=101.1
Q ss_pred CccEEEEEeeCCCCCEEEEEecC---CcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCC--cEEEEeCC
Q 015484 215 ESVVEDVSWHLKNENLFGSAGDD---CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT--TVALFDMR 289 (406)
Q Consensus 215 ~~~i~~i~~~p~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg--~i~vwd~~ 289 (406)
...+..-+|+|....+....-.. ..+.++|+.+++...... ..+.-...+|+|+|+.++++...|| .|.++|+.
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~ 270 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD 270 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence 44566677888655554443322 359999999887654443 2334445789999998888888888 56777887
Q ss_pred CCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCC
Q 015484 290 KMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNK 369 (406)
Q Consensus 290 ~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 369 (406)
.... ..+....+.-..=.|+|+|++++.+.+..|.-.||-+...+... ...+..+... ..-.|+|
T Consensus 271 ~~~~--~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-----------~riT~~~~~~--~~p~~Sp 335 (425)
T COG0823 271 GKNL--PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-----------TRLTFSGGGN--SNPVWSP 335 (425)
T ss_pred CCcc--eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-----------eEeeccCCCC--cCccCCC
Confidence 6553 23333333333568999999988888888887777665432211 1112222121 2678999
Q ss_pred CCCcEEEEEeCCCc--EEEEeCCCcc
Q 015484 370 NDPWVISSVADDNT--VQVWQMTDSI 393 (406)
Q Consensus 370 ~~~~~l~s~~~dg~--i~iw~~~~~~ 393 (406)
+|++++.....+|. |.+.++.++.
T Consensus 336 dG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 336 DGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CCCEEEEEeccCCceeeEEeccCCCC
Confidence 99976666544454 5555554443
No 336
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.91 E-value=0.018 Score=53.58 Aligned_cols=174 Identities=10% Similarity=0.117 Sum_probs=87.0
Q ss_pred eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceee-eeeeeeccCcc
Q 015484 139 EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVID-AMHVYEAHESV 217 (406)
Q Consensus 139 ~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~ 217 (406)
.|.||+.... ++..+.-..+.+.++.|+.+. .|+....||.++++|+.... .-.+. ......-....
T Consensus 62 ~I~iys~sG~---------ll~~i~w~~~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~ 129 (410)
T PF04841_consen 62 SIQIYSSSGK---------LLSSIPWDSGRIVGMGWTDDE--ELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECR 129 (410)
T ss_pred EEEEECCCCC---------EeEEEEECCCCEEEEEECCCC--eEEEEEcCCEEEEEeCCCce-eechhhhccccCccccc
Confidence 4888888763 233333233789999998854 57777799999999986332 00000 00000111111
Q ss_pred EEEEEeeCCCCCEEEEEecCCcEEEEECCCCc-ccccc---cc-------cCCCeeEEEecCCCCcEEEEEeCCCcEEEE
Q 015484 218 VEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ-TQQRV---KA-------HEKEVNYLSFNPYNEWVLATASSDTTVALF 286 (406)
Q Consensus 218 i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~---~~-------~~~~v~~i~~~~~~~~~l~~~~~dg~i~vw 286 (406)
+..+.+. +..++ .-..++.+.+..--... ....+ .. .........++.+.. ..+....++.+.+.
T Consensus 130 i~~~~~~--~~Giv-vLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i~~i 205 (410)
T PF04841_consen 130 IFAIWFY--KNGIV-VLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETIYII 205 (410)
T ss_pred ccccccC--CCCEE-EECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcc-eEEEEecCCEEEEE
Confidence 2222222 12233 23344444443322111 11111 00 000000122333444 34444445566644
Q ss_pred eCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 287 DMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 287 d~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
+-..... +. ..+++..|+.||+++ ++|.-..+|.+.|....-
T Consensus 206 ~~~~~~~----i~-~~~~i~~iavSpng~-~iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 206 DENSFKQ----ID-SDGPIIKIAVSPNGK-FIALFTDSGNLWVVSSDF 247 (410)
T ss_pred Ecccccc----cc-CCCCeEEEEECCCCC-EEEEEECCCCEEEEECcc
Confidence 4332111 21 246899999999998 588888899998887543
No 337
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.90 E-value=0.0035 Score=59.67 Aligned_cols=151 Identities=11% Similarity=0.106 Sum_probs=92.7
Q ss_pred cCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEe-------------------------------------
Q 015484 236 DDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS------------------------------------- 278 (406)
Q Consensus 236 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~------------------------------------- 278 (406)
..+.+.+.|..+.+...++.... ....++++|++.++++++.
T Consensus 213 y~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~ 291 (635)
T PRK02888 213 YRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFK 291 (635)
T ss_pred eeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEE
Confidence 34567777777766555543222 3355677777773333321
Q ss_pred --CCCcEEEEeCCC----CCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeE
Q 015484 279 --SDTTVALFDMRK----MTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELL 352 (406)
Q Consensus 279 --~dg~i~vwd~~~----~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (406)
.++.|.+.|.++ ....+..+ .-......+.++|+|+++++++..+.+|.|.|+.+........ . +....++
T Consensus 292 ~V~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~-~-~~~~~vv 368 (635)
T PRK02888 292 TIGGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK-I-KPRDAVV 368 (635)
T ss_pred EECCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc-C-CccceEE
Confidence 124577777776 22222222 2345678899999999988888889999999998754321100 0 0001112
Q ss_pred EEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 353 FSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 353 ~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
....- .......+|.++|. ...|---|..|..|++...
T Consensus 369 aevev-GlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~a 406 (635)
T PRK02888 369 AEPEL-GLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEAA 406 (635)
T ss_pred Eeecc-CCCcceEEECCCCC-EEEeEeecceeEEEehHHH
Confidence 22211 22345678999987 7888889999999999873
No 338
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.88 E-value=0.0046 Score=57.66 Aligned_cols=226 Identities=12% Similarity=0.156 Sum_probs=113.4
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
.-...-.+..+.++|+++ ++++ ..+|.-.|+..... ..- ..+....+.|.+.+ .+|+-...++
T Consensus 28 lg~~~~~p~~ls~npngr-~v~V-~g~geY~iyt~~~~-----------r~k--~~G~g~~~vw~~~n--~yAv~~~~~~ 90 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGR-FVLV-CGDGEYEIYTALAW-----------RNK--AFGSGLSFVWSSRN--RYAVLESSST 90 (443)
T ss_dssp EEE-SS--SEEEE-TTSS-EEEE-EETTEEEEEETTTT-----------EEE--EEEE-SEEEE-TSS--EEEEE-TTS-
T ss_pred CCCCCcCCeeEEECCCCC-EEEE-EcCCEEEEEEccCC-----------ccc--ccCceeEEEEecCc--cEEEEECCCe
Confidence 333556689999999994 5555 55788888884331 111 12445678899833 5777777889
Q ss_pred EEEE-eCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCC
Q 015484 191 ICLW-DVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 191 i~iw-d~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~ 269 (406)
|.++ ++... ..+.++ ....+..|- ++.+|+..+. +.|.+||..+++.+..+... +|..+.|+++
T Consensus 91 I~I~kn~~~~-~~k~i~-------~~~~~~~If----~G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~ 155 (443)
T PF04053_consen 91 IKIYKNFKNE-VVKSIK-------LPFSVEKIF----GGNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDD 155 (443)
T ss_dssp EEEEETTEE--TT------------SS-EEEEE-----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TT
T ss_pred EEEEEcCccc-cceEEc-------CCcccceEE----cCcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECC
Confidence 9996 33221 111111 112344433 2666655554 48999999999998888643 3899999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCC----------CCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccc
Q 015484 270 NEWVLATASSDTTVALFDMRKM----------TVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~----------~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 339 (406)
++ +++..+.+ .+.+++.... +..+..+..-...|.+..|..+ -++.|.. . .++-+ ..+.
T Consensus 156 g~-~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~-~-~lkYl--~~Ge--- 224 (443)
T PF04053_consen 156 GE-LVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTS-N-HLKYL--VNGE--- 224 (443)
T ss_dssp SS-EEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-T-T-EEEEE--ETTE---
T ss_pred CC-EEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcC-C-eEEEE--EcCC---
Confidence 99 77777655 6887765432 0013333332567888888865 3444443 3 66652 2210
Q ss_pred ccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
...+..+ ..++.=+...+... .+.....|+.|..+.++..
T Consensus 225 ---------~~~i~~l---d~~~yllgy~~~~~-~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 225 ---------TGIIAHL---DKPLYLLGYLPKEN-RLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp ---------EEEEEE----SS--EEEEEETTTT-EEEEE-TT--EEEEE--HH
T ss_pred ---------cceEEEc---CCceEEEEEEccCC-EEEEEECCCCEEEEEECHH
Confidence 1222222 23445555566444 5667778888888776543
No 339
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.85 E-value=0.00093 Score=61.29 Aligned_cols=213 Identities=8% Similarity=0.063 Sum_probs=107.6
Q ss_pred eEEEEEee-cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecC---CCC--
Q 015484 106 VEIAQKIR-VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSP---FKE-- 179 (406)
Q Consensus 106 ~~~~~~~~-h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~-- 179 (406)
|.....+. ..++|++++.+.-| ++|.|..+|.+.|.|++...............-......++++.|.- .+.
T Consensus 76 f~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 76 FLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred cCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 55554444 46999999998777 79999999999999997743322111111001112345688888863 121
Q ss_pred --CeEEEecCCCeEEEEeCCC-ccCCceeeeeeeeeccCccEEEEE-eeCCCC-------------------CEEEEEec
Q 015484 180 --GYLVSGSHDNKICLWDVSA-LAQDKVIDAMHVYEAHESVVEDVS-WHLKNE-------------------NLFGSAGD 236 (406)
Q Consensus 180 --~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~i~~i~-~~p~~~-------------------~~l~~~~~ 236 (406)
-.|++|...|.+.+|.+.- ...............+.++|..|. ++.+.+ .-++....
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 2688999999999998752 222222222222224555655554 322111 12334444
Q ss_pred CCcEEEEECCCCcccccccccCCCeeEEEec----CCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCC----CCeEEE
Q 015484 237 DCQLMIWDLRTNQTQQRVKAHEKEVNYLSFN----PYNEWVLATASSDTTVALFDMRKMTVPLHILSSHT----EEVFQV 308 (406)
Q Consensus 237 dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~----~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~----~~v~~i 308 (406)
+..++++...+.+..............+.+- ..+...|++-..+|.|++|.+...+. +....... ..+...
T Consensus 234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke-i~~~~l~~~~d~~~~~~s 312 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE-IKSVSLPPPLDSRRLSSS 312 (395)
T ss_dssp SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E-EEEEE-SS---HHHHTT-
T ss_pred ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH-hhcccCCCcccccccccc
Confidence 6789999988776644433121222333442 12334788888999999999988665 44443322 234456
Q ss_pred EEcCCCCCEEEEEe
Q 015484 309 EWDPNHETVLASSA 322 (406)
Q Consensus 309 ~~~p~~~~~l~s~~ 322 (406)
.++++|+ +++-.+
T Consensus 313 sis~~Gd-i~~~~g 325 (395)
T PF08596_consen 313 SISRNGD-IFYWTG 325 (395)
T ss_dssp EE-TTS--EEEE-S
T ss_pred EECCCCC-EEEEeC
Confidence 6788887 444443
No 340
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.84 E-value=0.0071 Score=54.52 Aligned_cols=193 Identities=17% Similarity=0.193 Sum_probs=106.5
Q ss_pred CeEEEecC----------CCeEEEEeCCCc-cCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC
Q 015484 180 GYLVSGSH----------DNKICLWDVSAL-AQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN 248 (406)
Q Consensus 180 ~~l~s~~~----------dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~ 248 (406)
.+|+.|.. .|.|.++++... .....++.+... ...++|++++-- ++.++++. .+.|.+|++...
T Consensus 43 ~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~ 117 (321)
T PF03178_consen 43 EYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST-EVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNS 117 (321)
T ss_dssp EEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETT
T ss_pred CEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhh--CCEEEEee--cCEEEEEEccCc
Confidence 37776643 289999999884 222234333333 347889998866 35544333 478999999887
Q ss_pred c-ccccc-cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEe--cCCCCCeEEEEEcCCCCCEEEEEeCC
Q 015484 249 Q-TQQRV-KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHIL--SSHTEEVFQVEWDPNHETVLASSADD 324 (406)
Q Consensus 249 ~-~~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~h~~~v~~i~~~p~~~~~l~s~~~d 324 (406)
+ ....- ......+.++... ++ ++++|.....+.++..+.....+..+ ......++++.+-++++ .++.+..+
T Consensus 118 ~~l~~~~~~~~~~~i~sl~~~--~~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~ 193 (321)
T PF03178_consen 118 KTLLKKAFYDSPFYITSLSVF--KN-YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIVGDKD 193 (321)
T ss_dssp SSEEEEEEE-BSSSEEEEEEE--TT-EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETT
T ss_pred ccchhhheecceEEEEEEecc--cc-EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEEEcCC
Confidence 7 32221 1123356666554 55 88899888888887555422212222 23355689999987775 68999999
Q ss_pred CcEEEEeCCCCCcccccccccCCC--CeeEEEecCCCCCeeeE---EeCCC--CCc-----EEEEEeCCCcEEEE
Q 015484 325 RRLMVWDLNRIGDEQLELDAEDGP--PELLFSHGGHKAKISDF---SWNKN--DPW-----VISSVADDNTVQVW 387 (406)
Q Consensus 325 g~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~~---~~s~~--~~~-----~l~s~~~dg~i~iw 387 (406)
|.+.++.......... ++. ......+. ....|+++ ++.|. +.. .++-++.+|.|.+.
T Consensus 194 gnl~~l~~~~~~~~~~-----~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 194 GNLFVLRYNPEIPNSR-----DGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SEEEEEEE-SS-SSTT-----TTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred CeEEEEEECCCCcccc-----cccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 9999998864211110 111 11222222 23457776 55552 221 36667788988744
No 341
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.82 E-value=0.012 Score=52.02 Aligned_cols=227 Identities=9% Similarity=-0.004 Sum_probs=125.4
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccC
Q 015484 122 RCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQ 201 (406)
Q Consensus 122 ~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 201 (406)
.|.|+...++.+--..+.|.-|+..+.. ...+. +.+.+.++.....+. .|+++.. -+.+++++++..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~---------~~~~~-~p~~~~~~~~~d~~g-~Lv~~~~--g~~~~~~~~~~~ 97 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGK---------KRVFP-SPGGFSSGALIDAGG-RLIACEH--GVRLLDPDTGGK 97 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCc---------eEEEE-CCCCcccceeecCCC-eEEEEcc--ccEEEeccCCce
Confidence 4677776677777778888888887532 12222 233344544444444 5665543 356667654432
Q ss_pred Cceeeeeeeeec-cCccEEEEEeeCCCCCEEEEEec-----------CCcEEEEECCCCcccccccccCCCeeEEEecCC
Q 015484 202 DKVIDAMHVYEA-HESVVEDVSWHLKNENLFGSAGD-----------DCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 202 ~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~ 269 (406)
...+. ..... .....+++...|+ +.+.++... -|.|+.+|. .+..+..+..+-..-+.|+|+|+
T Consensus 98 ~t~~~--~~~~~~~~~r~ND~~v~pd-G~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpD 173 (307)
T COG3386 98 ITLLA--EPEDGLPLNRPNDGVVDPD-GRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPD 173 (307)
T ss_pred eEEec--cccCCCCcCCCCceeEcCC-CCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCC
Confidence 11110 11111 1245677788884 554433322 133444443 34444444444455678999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCC--CC----CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC-cEEEEeCCCCCcccccc
Q 015484 270 NEWVLATASSDTTVALFDMRK--MT----VPLHILSSHTEEVFQVEWDPNHETVLASSADDR-RLMVWDLNRIGDEQLEL 342 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~--~~----~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~ 342 (406)
++.++++=+..+.|.-|++.. .. .....+....+..-.++...+|. +-+++..+| .|.+|+...
T Consensus 174 g~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pdG-------- 244 (307)
T COG3386 174 GKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPDG-------- 244 (307)
T ss_pred CCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCCC--------
Confidence 985666666668888888762 11 11222333456667777888885 333333343 888888763
Q ss_pred cccCCCCeeEEEecCCCCCeeeEEeCC-CCCcEEEEEeCC
Q 015484 343 DAEDGPPELLFSHGGHKAKISDFSWNK-NDPWVISSVADD 381 (406)
Q Consensus 343 ~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~~l~s~~~d 381 (406)
+++....-....+++++|-- +.+.+++++...
T Consensus 245 -------~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 245 -------KLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred -------cEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 44444444446678888853 445466666544
No 342
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00012 Score=67.96 Aligned_cols=95 Identities=21% Similarity=0.323 Sum_probs=76.4
Q ss_pred CccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCee-EEEecCCCCcEEEEEeCCCcEEEEeCCCCCC
Q 015484 215 ESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVN-YLSFNPYNEWVLATASSDTTVALFDMRKMTV 293 (406)
Q Consensus 215 ~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~-~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 293 (406)
...+.-+.|+| ...++|.+..+|.|.+..+. .+.+.++.-+...++ +++|.|+|. +||+|-.||+|++.|..++..
T Consensus 20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCc
Confidence 45678889999 78999999999999999887 555667765666666 999999999 999999999999999998776
Q ss_pred CcEEecCCCCCeEEEEEcC
Q 015484 294 PLHILSSHTEEVFQVEWDP 312 (406)
Q Consensus 294 ~~~~~~~h~~~v~~i~~~p 312 (406)
.......-...|.++-|.|
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 3332333456788888874
No 343
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.75 E-value=0.013 Score=53.63 Aligned_cols=234 Identities=13% Similarity=0.111 Sum_probs=116.5
Q ss_pred eeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCC
Q 015484 118 VNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVS 197 (406)
Q Consensus 118 v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~ 197 (406)
-..+-|+|++..++..--.+..|..+.+...... .. .--.+..+.+-.-|. -... -.+.++|+.
T Consensus 103 ~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~-------~~----~yp~~~~~~YPk~G~-~np~----v~l~v~~~~ 166 (353)
T PF00930_consen 103 RSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPP-------DS----QYPEVESIRYPKAGD-PNPR----VSLFVVDLA 166 (353)
T ss_dssp SBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSS-------TE----SS-EEEEEE--BTTS----E----EEEEEEESS
T ss_pred ccceEECCCCCEEEEEEECCcCCceEEeeccCCc-------cc----cCCcccccccCCCCC-cCCc----eEEEEEECC
Confidence 3568899999655555555566666655431100 00 001244455433343 1111 246667887
Q ss_pred CccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe-cC---CcEEEEECCCCccccccc-ccCCC---eeEEEec-C
Q 015484 198 ALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG-DD---CQLMIWDLRTNQTQQRVK-AHEKE---VNYLSFN-P 268 (406)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~d---g~i~i~d~~~~~~~~~~~-~~~~~---v~~i~~~-~ 268 (406)
+++.. .+...........-+..+.|.+++..+++.-. .+ ..+.++|..++....... ..... -..+.+. +
T Consensus 167 ~~~~~-~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~ 245 (353)
T PF00930_consen 167 SGKTT-ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGP 245 (353)
T ss_dssp STCCC-EE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TT
T ss_pred CCcEE-EeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccC
Confidence 76542 11111111234567889999984332443332 22 246677887765533221 11222 2345554 6
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEE-EEEcCCCCCEEEEEeCCC--cEEEEeCCCC-Ccccccccc
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQ-VEWDPNHETVLASSADDR--RLMVWDLNRI-GDEQLELDA 344 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~-i~~~p~~~~~l~s~~~dg--~i~iwd~~~~-~~~~~~~~~ 344 (406)
++..+|.....+|.-+||-+.........+....-.|.. +.|+++++.+..++..++ .-.||.+... +
T Consensus 246 ~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~-------- 317 (353)
T PF00930_consen 246 DGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG-------- 317 (353)
T ss_dssp TSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET--------
T ss_pred CCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC--------
Confidence 776677777788855554443323324566666667755 678898887777777633 3344443331 1
Q ss_pred cCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCC
Q 015484 345 EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADD 381 (406)
Q Consensus 345 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~d 381 (406)
..+..+......-..+.|||++++++.+++.-
T Consensus 318 -----~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~~ 349 (353)
T PF00930_consen 318 -----GEPKCLTCEDGDHYSASFSPDGKYYVDTYSGP 349 (353)
T ss_dssp -----TEEEESSTTSSTTEEEEE-TTSSEEEEEEESS
T ss_pred -----CCeEeccCCCCCceEEEECCCCCEEEEEEcCC
Confidence 11222222222226899999999877776643
No 344
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.74 E-value=0.0027 Score=45.97 Aligned_cols=102 Identities=18% Similarity=0.123 Sum_probs=67.2
Q ss_pred eeEEEe---cCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEEC
Q 015484 169 GYGLSW---SPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDL 245 (406)
Q Consensus 169 v~~l~~---~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~ 245 (406)
|+++++ ..+|.+.|++|+.|..|++|+=... +..+. ....|.+++-.. ...|+.+..+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~--------~~Ei~-e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI--------VAEIT-ETDKVTSLCSLG--GGRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE--------EEEEe-cccceEEEEEcC--CCEEEEEecCCEEEEEeC
Confidence 455554 4456678999999999999985531 22222 356788877664 577999999999999985
Q ss_pred CCCcccccccccCCCeeEEEec---CCCCcEEEEEeCCCcEE
Q 015484 246 RTNQTQQRVKAHEKEVNYLSFN---PYNEWVLATASSDTTVA 284 (406)
Q Consensus 246 ~~~~~~~~~~~~~~~v~~i~~~---~~~~~~l~~~~~dg~i~ 284 (406)
.. .+..++. +..++++++. -+|..-|++|-.+|.|-
T Consensus 71 ~~--RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 71 SQ--RLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cc--eeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 32 2333332 3335555543 33444688898888774
No 345
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.73 E-value=0.0023 Score=46.31 Aligned_cols=102 Identities=9% Similarity=0.016 Sum_probs=68.6
Q ss_pred eeEEEEcC---CCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEE
Q 015484 118 VNRARCMP---QKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLW 194 (406)
Q Consensus 118 v~~i~~~p---~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 194 (406)
|++++++. ++.+-|++|+.|..|+||+-... +..+. -.+.|+++.-... . .++.+-.+|+|-+|
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~----------~~Ei~-e~~~v~~L~~~~~-~-~F~Y~l~NGTVGvY 68 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI----------VAEIT-ETDKVTSLCSLGG-G-RFAYALANGTVGVY 68 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE----------EEEEe-cccceEEEEEcCC-C-EEEEEecCCEEEEE
Confidence 66777665 55678999999999999998762 23333 4566777776654 3 79999999999999
Q ss_pred eCCCccCCceeeeeeeeeccCccEEEEEeeC---CCCCEEEEEecCCcEE
Q 015484 195 DVSALAQDKVIDAMHVYEAHESVVEDVSWHL---KNENLFGSAGDDCQLM 241 (406)
Q Consensus 195 d~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p---~~~~~l~~~~~dg~i~ 241 (406)
+-.. +.+ ..+ .+..+.++++.. ++..-|++|-.+|.|-
T Consensus 69 ~~~~----RlW----RiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 69 DRSQ----RLW----RIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eCcc----eee----eec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 8643 112 112 233466666553 2234677888888764
No 346
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.73 E-value=0.0046 Score=57.62 Aligned_cols=170 Identities=15% Similarity=0.172 Sum_probs=85.1
Q ss_pred eEEEEeCCCccccccC--CCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCc
Q 015484 139 EVYVFDCAKQAEKQQD--DCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHES 216 (406)
Q Consensus 139 ~i~iw~~~~~~~~~~~--~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 216 (406)
.|+.+++........+ ...+...+.........+.++|+|+ +++. +.||...++...... . ...+
T Consensus 3 ~i~~~~~~~~~~~~dg~~~~l~~k~lg~~~~~p~~ls~npngr-~v~V-~g~geY~iyt~~~~r--------~---k~~G 69 (443)
T PF04053_consen 3 EIRTANLKNISEIKDGERLPLSVKELGSCEIYPQSLSHNPNGR-FVLV-CGDGEYEIYTALAWR--------N---KAFG 69 (443)
T ss_dssp EEEEEE--S-----TTS-B----EEEEE-SS--SEEEE-TTSS-EEEE-EETTEEEEEETTTTE--------E---EEEE
T ss_pred ceEEEECcCCCccCCCceeeEEeccCCCCCcCCeeEEECCCCC-EEEE-EcCCEEEEEEccCCc--------c---cccC
Confidence 4566666554211111 1122334444455678999999988 6666 567888888733221 1 1234
Q ss_pred cEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcE
Q 015484 217 VVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLH 296 (406)
Q Consensus 217 ~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 296 (406)
.....+|.+ .+.+|+-...+.|.++.--..+....+.. ...+..|-. |. +|+..+.+ .|.+||+.+... +.
T Consensus 70 ~g~~~vw~~--~n~yAv~~~~~~I~I~kn~~~~~~k~i~~-~~~~~~If~---G~-LL~~~~~~-~i~~yDw~~~~~-i~ 140 (443)
T PF04053_consen 70 SGLSFVWSS--RNRYAVLESSSTIKIYKNFKNEVVKSIKL-PFSVEKIFG---GN-LLGVKSSD-FICFYDWETGKL-IR 140 (443)
T ss_dssp E-SEEEE-T--SSEEEEE-TTS-EEEEETTEE-TT------SS-EEEEE----SS-SEEEEETT-EEEEE-TTT--E-EE
T ss_pred ceeEEEEec--CccEEEEECCCeEEEEEcCccccceEEcC-CcccceEEc---Cc-EEEEECCC-CEEEEEhhHcce-ee
Confidence 556778986 55577777788999973323333334432 122333322 66 66666544 899999998654 66
Q ss_pred EecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 297 ILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 297 ~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
.+... +|..+.|+++++ +++..+ +..+.|++...
T Consensus 141 ~i~v~--~vk~V~Ws~~g~-~val~t-~~~i~il~~~~ 174 (443)
T PF04053_consen 141 RIDVS--AVKYVIWSDDGE-LVALVT-KDSIYILKYNL 174 (443)
T ss_dssp EESS---E-EEEEE-TTSS-EEEEE--S-SEEEEEE-H
T ss_pred EEecC--CCcEEEEECCCC-EEEEEe-CCeEEEEEecc
Confidence 66643 489999999997 465555 44788877654
No 347
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.043 Score=50.66 Aligned_cols=246 Identities=13% Similarity=0.102 Sum_probs=150.0
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
.....+...|++..+.++-.....+.+.+... .. . ......-...-..++.++.+....++...++.|.+.|
T Consensus 31 ~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~-n~-----~--~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid 102 (381)
T COG3391 31 RGPGGVAVNPDGTQVYVANSGSNDVSVIDATS-NT-----V--TQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVID 102 (381)
T ss_pred CCCceeEEcCccCEEEEEeecCceeeeccccc-ce-----e--eeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEc
Confidence 36677788888755555544444454444442 11 0 0111111133457788888875666666678999999
Q ss_pred CCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe--cCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcE
Q 015484 196 VSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG--DDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWV 273 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 273 (406)
....... .... -......++++|.+..+.++-. .++.+.+.|..+++..........+ ..++++|++...
T Consensus 103 ~~~~~~~------~~~~-vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~v 174 (381)
T COG3391 103 TATNTVL------GSIP-VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKV 174 (381)
T ss_pred Cccccee------eEee-eccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeE
Confidence 6654321 1111 1225677889996666666655 4789999999988887775443444 889999999955
Q ss_pred EEEEeCCCcEEEEeCCCCCCCcEE----ecCCCCCeEEEEEcCCCCCEEEEEeCC--CcEEEEeCCCCCcccccccccCC
Q 015484 274 LATASSDTTVALFDMRKMTVPLHI----LSSHTEEVFQVEWDPNHETVLASSADD--RRLMVWDLNRIGDEQLELDAEDG 347 (406)
Q Consensus 274 l~~~~~dg~i~vwd~~~~~~~~~~----~~~h~~~v~~i~~~p~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~ 347 (406)
+++-..++.|.+.|...... ... ...-......+.++|++.++.++...+ +.+...|....
T Consensus 175 yv~~~~~~~v~vi~~~~~~v-~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~------------ 241 (381)
T COG3391 175 YVTNSDDNTVSVIDTSGNSV-VRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG------------ 241 (381)
T ss_pred EEEecCCCeEEEEeCCCcce-eccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc------------
Confidence 66556788999999765432 110 111223457789999998655555444 58888887762
Q ss_pred CCeeEEE--ecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 348 PPELLFS--HGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 348 ~~~~~~~--~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
..... ..+.. ....+..+|+|.+..+.-+..+.+.+-|..+..
T Consensus 242 --~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 242 --NVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred --eEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 11111 11111 456788999998544443445778888777643
No 348
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.66 E-value=0.011 Score=50.73 Aligned_cols=183 Identities=14% Similarity=0.068 Sum_probs=102.2
Q ss_pred EEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeee
Q 015484 130 LVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMH 209 (406)
Q Consensus 130 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 209 (406)
.+.+++.++.++.||..++.. ...... ...+...... .+. .++.++.++.|..+|..+++....... .
T Consensus 38 ~v~~~~~~~~l~~~d~~tG~~--------~W~~~~-~~~~~~~~~~-~~~-~v~v~~~~~~l~~~d~~tG~~~W~~~~-~ 105 (238)
T PF13360_consen 38 RVYVASGDGNLYALDAKTGKV--------LWRFDL-PGPISGAPVV-DGG-RVYVGTSDGSLYALDAKTGKVLWSIYL-T 105 (238)
T ss_dssp EEEEEETTSEEEEEETTTSEE--------EEEEEC-SSCGGSGEEE-ETT-EEEEEETTSEEEEEETTTSCEEEEEEE--
T ss_pred EEEEEcCCCEEEEEECCCCCE--------EEEeec-cccccceeee-ccc-ccccccceeeeEecccCCcceeeeecc-c
Confidence 466668899999999977533 222322 1221111111 244 677777888999999888765332100 0
Q ss_pred eeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCC----------e-eEEEecCCCCcEEEEEe
Q 015484 210 VYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKE----------V-NYLSFNPYNEWVLATAS 278 (406)
Q Consensus 210 ~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----------v-~~i~~~~~~~~~l~~~~ 278 (406)
...... ......... .+..++++..++.|..+|+++|+.+......... + ..+.+. ++ .+..++
T Consensus 106 ~~~~~~-~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~~~~ 180 (238)
T PF13360_consen 106 SSPPAG-VRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG--RVYVSS 180 (238)
T ss_dssp SSCTCS-TB--SEEEE-ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT--EEEEEC
T ss_pred cccccc-cccccCceE-ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC--EEEEEc
Confidence 000011 111122222 2566777787999999999999886665432211 1 223333 23 566666
Q ss_pred CCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 279 SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 279 ~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
.++.+.-+|+.+++. +-... ...+..+ ....+. .|+.++.++.|..||+.+
T Consensus 181 ~~g~~~~~d~~tg~~-~w~~~--~~~~~~~-~~~~~~-~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 181 GDGRVVAVDLATGEK-LWSKP--ISGIYSL-PSVDGG-TLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp CTSSEEEEETTTTEE-EEEEC--SS-ECEC-EECCCT-EEEEEETTTEEEEEETTT
T ss_pred CCCeEEEEECCCCCE-EEEec--CCCccCC-ceeeCC-EEEEEeCCCEEEEEECCC
Confidence 677544449998764 22222 2223332 335555 466666999999999987
No 349
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.65 E-value=0.018 Score=53.60 Aligned_cols=227 Identities=15% Similarity=0.032 Sum_probs=114.2
Q ss_pred EEEEEeCCCeEEEEeCCCccccccCCC-CCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeee
Q 015484 130 LVGTKTSSCEVYVFDCAKQAEKQQDDC-DPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAM 208 (406)
Q Consensus 130 ~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 208 (406)
.++.++.+|.+.-+|..++...-.... .+.....+...++ + .+. .++.++.+|.+..+|..+++.....+..
T Consensus 162 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~--v----~~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~ 234 (394)
T PRK11138 162 LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPA--T----AFG-GAIVGGDNGRVSAVLMEQGQLIWQQRIS 234 (394)
T ss_pred EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCE--E----ECC-EEEEEcCCCEEEEEEccCChhhheeccc
Confidence 455667788888888877533210000 0000011111111 1 123 5667778899999998887643322110
Q ss_pred eeeeccC-ccEEEEEeeC-CCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEE
Q 015484 209 HVYEAHE-SVVEDVSWHL-KNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALF 286 (406)
Q Consensus 209 ~~~~~~~-~~i~~i~~~p-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vw 286 (406)
.....+. .....+.-+| -.+..++.++.+|.+..+|+.+++.+..... .....+.. .+. .+..++.+|.+..+
T Consensus 235 ~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~--~~~-~vy~~~~~g~l~al 309 (394)
T PRK11138 235 QPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV--DGG-RIYLVDQNDRVYAL 309 (394)
T ss_pred cCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE--ECC-EEEEEcCCCeEEEE
Confidence 0000000 0001111111 0134455677889999999999876544321 11112222 244 57777889999999
Q ss_pred eCCCCCCCcEEecC-CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCee-e
Q 015484 287 DMRKMTVPLHILSS-HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKIS-D 364 (406)
Q Consensus 287 d~~~~~~~~~~~~~-h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~ 364 (406)
|..+++. +-.... ......+.... +. .|+.++.+|.+.+.|..+. +.+....-....+. .
T Consensus 310 d~~tG~~-~W~~~~~~~~~~~sp~v~--~g-~l~v~~~~G~l~~ld~~tG--------------~~~~~~~~~~~~~~s~ 371 (394)
T PRK11138 310 DTRGGVE-LWSQSDLLHRLLTAPVLY--NG-YLVVGDSEGYLHWINREDG--------------RFVAQQKVDSSGFLSE 371 (394)
T ss_pred ECCCCcE-EEcccccCCCcccCCEEE--CC-EEEEEeCCCEEEEEECCCC--------------CEEEEEEcCCCcceeC
Confidence 9987653 211111 01111111221 33 4778899999999998762 22322221111121 1
Q ss_pred EEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 365 FSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 365 ~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
.... ++ .|+.++.||.|..+++
T Consensus 372 P~~~-~~--~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 372 PVVA-DD--KLLIQARDGTVYAITR 393 (394)
T ss_pred CEEE-CC--EEEEEeCCceEEEEeC
Confidence 1221 33 4667788999888765
No 350
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.59 E-value=0.023 Score=52.84 Aligned_cols=223 Identities=9% Similarity=0.013 Sum_probs=118.6
Q ss_pred EEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeE-EEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeee
Q 015484 130 LVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYG-LSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAM 208 (406)
Q Consensus 130 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 208 (406)
.+..++.+|.++-+|..+++. .-...... .+.+ .... +. .++.+..+|.+..+|..+++........
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~--------~W~~~~~~-~~~ssP~v~--~~-~v~v~~~~g~l~ald~~tG~~~W~~~~~ 189 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEV--------AWQTKVAG-EALSRPVVS--DG-LVLVHTSNGMLQALNESDGAVKWTVNLD 189 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCC--------cccccCCC-ceecCCEEE--CC-EEEEECCCCEEEEEEccCCCEeeeecCC
Confidence 466677889999999887543 22221111 1111 1111 33 6777888999999999988654332210
Q ss_pred e---eeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccC----C---CeeEEEecC--CCCcEEEE
Q 015484 209 H---VYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHE----K---EVNYLSFNP--YNEWVLAT 276 (406)
Q Consensus 209 ~---~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~---~v~~i~~~~--~~~~~l~~ 276 (406)
. .......++ .. + ..++.++.+|.+..+|..+++.+....... . ....+.-+| .+. .++.
T Consensus 190 ~~~~~~~~~~sP~----v~--~-~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~-~vy~ 261 (394)
T PRK11138 190 VPSLTLRGESAPA----TA--F-GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG-VVYA 261 (394)
T ss_pred CCcccccCCCCCE----EE--C-CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECC-EEEE
Confidence 0 000011111 11 2 345567788999999999887654432110 0 011111122 234 5666
Q ss_pred EeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEec
Q 015484 277 ASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG 356 (406)
Q Consensus 277 ~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (406)
++.+|.+..+|..+++. +-.... .....+.. .+. .++.++.+|.+..+|..+......... .
T Consensus 262 ~~~~g~l~ald~~tG~~-~W~~~~--~~~~~~~~--~~~-~vy~~~~~g~l~ald~~tG~~~W~~~~------------~ 323 (394)
T PRK11138 262 LAYNGNLVALDLRSGQI-VWKREY--GSVNDFAV--DGG-RIYLVDQNDRVYALDTRGGVELWSQSD------------L 323 (394)
T ss_pred EEcCCeEEEEECCCCCE-EEeecC--CCccCcEE--ECC-EEEEEcCCCeEEEEECCCCcEEEcccc------------c
Confidence 77889999999988764 222211 11112222 233 366777899999999876332111000 0
Q ss_pred CCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 357 GHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 357 ~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.+ ....+.... +. .++.++.||.|.+.|..++..
T Consensus 324 ~~-~~~~sp~v~--~g-~l~v~~~~G~l~~ld~~tG~~ 357 (394)
T PRK11138 324 LH-RLLTAPVLY--NG-YLVVGDSEGYLHWINREDGRF 357 (394)
T ss_pred CC-CcccCCEEE--CC-EEEEEeCCCEEEEEECCCCCE
Confidence 00 011111111 23 466778899999999888754
No 351
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.0014 Score=59.92 Aligned_cols=142 Identities=12% Similarity=0.164 Sum_probs=97.7
Q ss_pred CEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCc------EEEEEeCCCcEEEEeCCCCCC-CcEEecCC
Q 015484 229 NLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEW------VLATASSDTTVALFDMRKMTV-PLHILSSH 301 (406)
Q Consensus 229 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~------~l~~~~~dg~i~vwd~~~~~~-~~~~~~~h 301 (406)
-+|.++.....|+-.|++.|+.+...+.+.. |+-+.+.|+... --+.|-.+..|.-||+|-... .+....+|
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 3455566677899999999999888875555 777788876431 123466788899999995443 23333333
Q ss_pred C----CCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEE
Q 015484 302 T----EEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISS 377 (406)
Q Consensus 302 ~----~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s 377 (406)
. ....|++-..+| .++.|+.+|.|++||--. . .....+.+-..+|..|..+.+|+|+|+|
T Consensus 426 qy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdri~-~-------------~AKTAlPgLG~~I~hVdvtadGKwil~T 489 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDRIG-R-------------RAKTALPGLGDAIKHVDVTADGKWILAT 489 (644)
T ss_pred ccccccccceeeecCCc--eEEEeecCCcEEeehhhh-h-------------hhhhcccccCCceeeEEeeccCcEEEEe
Confidence 2 345566666566 599999999999999732 1 2222345667789999999999987777
Q ss_pred EeCCCcEEEEeC
Q 015484 378 VADDNTVQVWQM 389 (406)
Q Consensus 378 ~~~dg~i~iw~~ 389 (406)
+ +..+.+-++
T Consensus 490 c--~tyLlLi~t 499 (644)
T KOG2395|consen 490 C--KTYLLLIDT 499 (644)
T ss_pred c--ccEEEEEEE
Confidence 5 566666654
No 352
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.0035 Score=57.40 Aligned_cols=141 Identities=13% Similarity=0.150 Sum_probs=90.7
Q ss_pred eEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCC-------CCEEEEEecCCcEEEEECCCCcc--c
Q 015484 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKN-------ENLFGSAGDDCQLMIWDLRTNQT--Q 251 (406)
Q Consensus 181 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~-------~~~l~~~~~dg~i~i~d~~~~~~--~ 251 (406)
+|.++.....++-.|++.++... .+.-+.. |+-+.+.|+. ...| .|-.+..|.-||+|-... +
T Consensus 348 il~~~~~~~~l~klDIE~GKIVe------EWk~~~d-i~mv~~t~d~K~~Ql~~e~Tl-vGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVE------EWKFEDD-INMVDITPDFKFAQLTSEQTL-VGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred EeeCCCCcCcceeeecccceeee------EeeccCC-cceeeccCCcchhcccccccE-EeecCCceEEecccccCccee
Confidence 45556666678888888875433 3333333 5555555521 1223 466788899999985332 1
Q ss_pred ccccc----cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcE
Q 015484 252 QRVKA----HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRL 327 (406)
Q Consensus 252 ~~~~~----~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i 327 (406)
..-.. ......|++-..+| ++++|+.+|.|++||- .+......+.+-..+|..|..+.+|+++|+|| +..+
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyL 494 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYL 494 (644)
T ss_pred eeeeccccccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEE
Confidence 11111 12344566555555 7999999999999997 44544566777888999999999999765554 6677
Q ss_pred EEEeCCC
Q 015484 328 MVWDLNR 334 (406)
Q Consensus 328 ~iwd~~~ 334 (406)
.+-++.-
T Consensus 495 lLi~t~~ 501 (644)
T KOG2395|consen 495 LLIDTLI 501 (644)
T ss_pred EEEEEec
Confidence 7777653
No 353
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00065 Score=63.20 Aligned_cols=75 Identities=19% Similarity=0.377 Sum_probs=64.3
Q ss_pred CCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeE-EEEEcCCCCCEEEEEeCCCcEEEEeCCCCC
Q 015484 258 EKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVF-QVEWDPNHETVLASSADDRRLMVWDLNRIG 336 (406)
Q Consensus 258 ~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~-~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 336 (406)
...+..+.|+|.-+ ++|.+..+|.|.+..+. .. .+.++..|...++ +++|.|+|+ +||.|-.||+|++-|+.+..
T Consensus 20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~q-Rlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQ-RLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred ccceEEEEEcCccc-hhheeccCCcEEEEEec-cc-eeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCC
Confidence 45677899999988 99999999999999887 33 3777776777777 999999996 89999999999999999854
No 354
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.48 E-value=0.095 Score=49.14 Aligned_cols=245 Identities=14% Similarity=0.168 Sum_probs=124.2
Q ss_pred eeEEEEcCCCCcEEEEEeCCC----eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC-----
Q 015484 118 VNRARCMPQKPNLVGTKTSSC----EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD----- 188 (406)
Q Consensus 118 v~~i~~~p~~~~~l~~~~~dg----~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d----- 188 (406)
+...+++|++..++.+-+..| .++++|+.++.... -.+.. .....+.|.+++..++.+...+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~-------d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~ 196 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP-------DGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTS 196 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE-------EEEEE--EESEEEEECTTSSEEEEEECSTTTSS-
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC-------Ccccc--cccceEEEeCCCCEEEEEEeCcccccc
Confidence 335678999965544545555 59999998842210 11111 1122399999988555554332
Q ss_pred -----CeEEEEeCCCccCCceeeeeeeeeccCc-c-EEEEEeeCCCCCEEEEEecC---CcEEEEECCCC----cccccc
Q 015484 189 -----NKICLWDVSALAQDKVIDAMHVYEAHES-V-VEDVSWHLKNENLFGSAGDD---CQLMIWDLRTN----QTQQRV 254 (406)
Q Consensus 189 -----g~i~iwd~~~~~~~~~~~~~~~~~~~~~-~-i~~i~~~p~~~~~l~~~~~d---g~i~i~d~~~~----~~~~~~ 254 (406)
..|..|.+.+..... ...+..... . ...+..++++..+++..... ..+.+.|+..+ .....+
T Consensus 197 ~~~~~~~v~~~~~gt~~~~d----~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l 272 (414)
T PF02897_consen 197 DSGYPRQVYRHKLGTPQSED----ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLL 272 (414)
T ss_dssp CCGCCEEEEEEETTS-GGG-----EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEE
T ss_pred cCCCCcEEEEEECCCChHhC----eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEE
Confidence 237778877654321 122333222 2 56778887444444444333 34788888764 223333
Q ss_pred cccCCCe-eEEEecCCCCcEEEEEeC---CCcEEEEeCCCCCC--CcEEecCCCCC--eEEEEEcCCCCCEEEEEeCCCc
Q 015484 255 KAHEKEV-NYLSFNPYNEWVLATASS---DTTVALFDMRKMTV--PLHILSSHTEE--VFQVEWDPNHETVLASSADDRR 326 (406)
Q Consensus 255 ~~~~~~v-~~i~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~--~~~~~~~h~~~--v~~i~~~p~~~~~l~s~~~dg~ 326 (406)
......+ ..+... .+. +++.... .+.|.-.++..... ....+..+... +..+.. .+.++++....++.
T Consensus 273 ~~~~~~~~~~v~~~-~~~-~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~ 348 (414)
T PF02897_consen 273 SPREDGVEYYVDHH-GDR-LYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGS 348 (414)
T ss_dssp EESSSS-EEEEEEE-TTE-EEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTE
T ss_pred eCCCCceEEEEEcc-CCE-EEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCc
Confidence 3333333 334333 343 4443322 34677777776542 12245555553 444444 45557777766664
Q ss_pred --EEEEeCC-CCCcccccccccCCCCeeEEEe-cCCCCCeeeEEeCCCCCcEEEEEeC---CCcEEEEeCCCccc
Q 015484 327 --LMVWDLN-RIGDEQLELDAEDGPPELLFSH-GGHKAKISDFSWNKNDPWVISSVAD---DNTVQVWQMTDSIY 394 (406)
Q Consensus 327 --i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~~l~s~~~---dg~i~iw~~~~~~~ 394 (406)
|+++++. . ...... ..-.+.|..+...++++.+.++.+. -+.+.-||+.++..
T Consensus 349 ~~l~v~~~~~~---------------~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 349 SRLRVYDLDDG---------------KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEEEETT-T---------------EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred cEEEEEECCCC---------------cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 7778877 3 111111 1123345666666666545554442 24678888887754
No 355
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.48 E-value=0.00026 Score=40.37 Aligned_cols=36 Identities=42% Similarity=0.607 Sum_probs=31.9
Q ss_pred ceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 159 DLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 159 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
...+..|...|.++.|.+.+. .+++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 556778889999999999886 999999999999996
No 356
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.47 E-value=0.046 Score=45.78 Aligned_cols=141 Identities=10% Similarity=-0.039 Sum_probs=88.4
Q ss_pred CCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccc
Q 015484 176 PFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK 255 (406)
Q Consensus 176 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 255 (406)
++.+.+++.|+..+.+.--|..+++....- .-...|.+-+.- -+++++.|+..|.+++.+..++.....+.
T Consensus 20 ~dskT~v~igSHs~~~~avd~~sG~~~We~-------ilg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~ 90 (354)
T KOG4649|consen 20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEA-------ILGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFV 90 (354)
T ss_pred cCCceEEEEecCCceEEEecCCCCcEEeeh-------hhCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeee
Confidence 334448889999999998898887532211 112334433333 26678899999999999999998776664
Q ss_pred ccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEE
Q 015484 256 AHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLM 328 (406)
Q Consensus 256 ~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~ 328 (406)
.-..-=......+++. ++..|+.|+..+..|.++... +...+-..+.-.+=+..|-... |..+...|.+.
T Consensus 91 ~~~~vk~~a~~d~~~g-lIycgshd~~~yalD~~~~~c-VykskcgG~~f~sP~i~~g~~s-ly~a~t~G~vl 160 (354)
T KOG4649|consen 91 ILETVKVRAQCDFDGG-LIYCGSHDGNFYALDPKTYGC-VYKSKCGGGTFVSPVIAPGDGS-LYAAITAGAVL 160 (354)
T ss_pred ehhhhccceEEcCCCc-eEEEecCCCcEEEecccccce-EEecccCCceeccceecCCCce-EEEEeccceEE
Confidence 3222222344567777 999999999999999998655 4444433333333344552222 33444444443
No 357
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.47 E-value=0.00045 Score=39.31 Aligned_cols=37 Identities=24% Similarity=0.610 Sum_probs=31.5
Q ss_pred eEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 351 LLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 351 ~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
....+..|...|.++.|++.+. ++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 3455567888999999999887 789999999999996
No 358
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.47 E-value=0.028 Score=51.39 Aligned_cols=228 Identities=14% Similarity=0.216 Sum_probs=119.3
Q ss_pred CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeee---eeec
Q 015484 137 SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMH---VYEA 213 (406)
Q Consensus 137 dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~ 213 (406)
.+.+.|||+.+.... .+......+....|+|+|. .++-. .++.|.+++..++.. ..+..-. .+.+
T Consensus 22 ~~~y~i~d~~~~~~~---------~l~~~~~~~~~~~~sP~g~-~~~~v-~~~nly~~~~~~~~~-~~lT~dg~~~i~nG 89 (353)
T PF00930_consen 22 KGDYYIYDIETGEIT---------PLTPPPPKLQDAKWSPDGK-YIAFV-RDNNLYLRDLATGQE-TQLTTDGEPGIYNG 89 (353)
T ss_dssp EEEEEEEETTTTEEE---------ESS-EETTBSEEEE-SSST-EEEEE-ETTEEEEESSTTSEE-EESES--TTTEEES
T ss_pred ceeEEEEecCCCceE---------ECcCCccccccceeecCCC-eeEEE-ecCceEEEECCCCCe-EEeccccceeEEcC
Confidence 467999999984321 1222256788999999988 77766 467899998766522 1110000 0000
Q ss_pred c---------CccEEEEEeeCCCCCEEEEE-ecCCc-----------------------------------EEEEECCCC
Q 015484 214 H---------ESVVEDVSWHLKNENLFGSA-GDDCQ-----------------------------------LMIWDLRTN 248 (406)
Q Consensus 214 ~---------~~~i~~i~~~p~~~~~l~~~-~~dg~-----------------------------------i~i~d~~~~ 248 (406)
- -+.-..+-|+|+ ++.|+.. -++.. +.++|+.++
T Consensus 90 ~~dwvyeEEv~~~~~~~~WSpd-~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~ 168 (353)
T PF00930_consen 90 VPDWVYEEEVFDRRSAVWWSPD-SKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASG 168 (353)
T ss_dssp B--HHHHHHTSSSSBSEEE-TT-SSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSST
T ss_pred ccceeccccccccccceEECCC-CCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCC
Confidence 0 112245678884 4444433 22222 344555555
Q ss_pred cccc-c----ccccCCCeeEEEecCCCC-cEEEEEeCCC---cEEEEeCCCCCCCcEEecCCCCCe---EEEEEc-CCCC
Q 015484 249 QTQQ-R----VKAHEKEVNYLSFNPYNE-WVLATASSDT---TVALFDMRKMTVPLHILSSHTEEV---FQVEWD-PNHE 315 (406)
Q Consensus 249 ~~~~-~----~~~~~~~v~~i~~~~~~~-~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~h~~~v---~~i~~~-p~~~ 315 (406)
+... . +......+..+.|.+++. .++.....+. .+.++|..++...+.........| ....|. +++.
T Consensus 169 ~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~ 248 (353)
T PF00930_consen 169 KTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGN 248 (353)
T ss_dssp CCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSS
T ss_pred cEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCC
Confidence 4321 1 122345678899998887 3333344443 566778876554222222222322 345554 7776
Q ss_pred CEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeee-EEeCCCCCcEEEEEeCCC--cEEEEeCC
Q 015484 316 TVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISD-FSWNKNDPWVISSVADDN--TVQVWQMT 390 (406)
Q Consensus 316 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~s~~~~~~l~s~~~dg--~i~iw~~~ 390 (406)
.++.....||--.||-+...+. ....+....-.|.. +.|++++..++.++..++ .-++|.+.
T Consensus 249 ~~l~~s~~~G~~hly~~~~~~~-------------~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~ 313 (353)
T PF00930_consen 249 EFLWISERDGYRHLYLYDLDGG-------------KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVS 313 (353)
T ss_dssp EEEEEEETTSSEEEEEEETTSS-------------EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred EEEEEEEcCCCcEEEEEccccc-------------ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence 6777777888766666554222 12233333444644 677888776666766533 44555443
No 359
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.45 E-value=0.057 Score=45.92 Aligned_cols=212 Identities=15% Similarity=0.163 Sum_probs=123.3
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCe-EEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCE-VYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
......+.....|.|+|..+.-++.+-.-|+ ..++|.+...............+.+|. .|||+|. +|.+.-+
T Consensus 61 v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~-~LYATEn 133 (366)
T COG3490 61 VFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGR-LLYATEN 133 (366)
T ss_pred eeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCc-EEEeecC
Confidence 3344455666778999988777888877775 577888874332211111122334443 5899998 7766543
Q ss_pred C-----CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec------------------CCcEEEEE
Q 015484 188 D-----NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD------------------DCQLMIWD 244 (406)
Q Consensus 188 d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~------------------dg~i~i~d 244 (406)
| |.|-|||.+.+ +..+..+..|.-....+.|.+ +++.++.+.. .-++.+.|
T Consensus 134 dfd~~rGViGvYd~r~~-----fqrvgE~~t~GiGpHev~lm~-DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld 207 (366)
T COG3490 134 DFDPNRGVIGVYDAREG-----FQRVGEFSTHGIGPHEVTLMA-DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLD 207 (366)
T ss_pred CCCCCCceEEEEecccc-----cceecccccCCcCcceeEEec-CCcEEEEeCCceecccccCccccchhhcCccEEEEe
Confidence 3 78999998853 223455666777778888998 5566544421 12344555
Q ss_pred CCCCcccccc--c--ccCCCeeEEEecCCCCcEEEEEeCCCc----EEEEeCCCCCCCcEEecC-------CCCCeEEEE
Q 015484 245 LRTNQTQQRV--K--AHEKEVNYLSFNPYNEWVLATASSDTT----VALFDMRKMTVPLHILSS-------HTEEVFQVE 309 (406)
Q Consensus 245 ~~~~~~~~~~--~--~~~~~v~~i~~~~~~~~~l~~~~~dg~----i~vwd~~~~~~~~~~~~~-------h~~~v~~i~ 309 (406)
..+++.+.+. . .+.-.+..++..++|. +++.+-..|. --+.-......++..+.. -...|-+|+
T Consensus 208 ~atG~liekh~Lp~~l~~lSiRHld~g~dgt-vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA 286 (366)
T COG3490 208 AATGNLIEKHTLPASLRQLSIRHLDIGRDGT-VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIA 286 (366)
T ss_pred ccccchhhhccCchhhhhcceeeeeeCCCCc-EEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhhee
Confidence 5566554433 1 3445677888888887 4443333221 001111111222332222 123477788
Q ss_pred EcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 310 WDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 310 ~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
.+.....+.+|+-..+...+||..+
T Consensus 287 ~n~~~glV~lTSP~GN~~vi~da~t 311 (366)
T COG3490 287 ANRRDGLVALTSPRGNRAVIWDAAT 311 (366)
T ss_pred ecccCCeEEEecCCCCeEEEEEcCC
Confidence 8877765556666677889999987
No 360
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.43 E-value=0.0032 Score=59.92 Aligned_cols=95 Identities=15% Similarity=0.222 Sum_probs=68.0
Q ss_pred CCcEEEEECCC-----CcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCC-----------cEEecC
Q 015484 237 DCQLMIWDLRT-----NQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVP-----------LHILSS 300 (406)
Q Consensus 237 dg~i~i~d~~~-----~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-----------~~~~~~ 300 (406)
++.|.+.|.++ .+.+..+. -......+.++|+|+++++++..+.++.|+|+.+.+.. +.....
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev 373 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL 373 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence 35688888877 23333333 34456789999999977777778999999999875531 222222
Q ss_pred CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 301 HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 301 h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
.......+|.++|. ...|..-|..|..|++..
T Consensus 374 -GlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 -GLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred -CCCcceEEECCCCC-EEEeEeecceeEEEehHH
Confidence 23345678999986 688888999999999876
No 361
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.42 E-value=0.034 Score=50.13 Aligned_cols=195 Identities=13% Similarity=0.130 Sum_probs=108.3
Q ss_pred EEEEEeecCCCC-C----CCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCCceeEEEEcCCCCcEEEEEeC
Q 015484 62 HKFVLGTHTSED-F----PNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTS 136 (406)
Q Consensus 62 ~~~~~gt~~~~~-~----~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~ 136 (406)
..+++||.-..+ . ...|++..+.-. . .. ..+++.......+++|++++-. .+ . |+++.
T Consensus 43 ~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~------~--~~-----~~~l~~i~~~~~~g~V~ai~~~-~~-~-lv~~~- 105 (321)
T PF03178_consen 43 EYIVVGTAFNYGEDPEPSSGRILVFEISES------P--EN-----NFKLKLIHSTEVKGPVTAICSF-NG-R-LVVAV- 105 (321)
T ss_dssp EEEEEEEEE--TTSSS-S-EEEEEEEECSS------------------EEEEEEEEEESS-EEEEEEE-TT-E-EEEEE-
T ss_pred CEEEEEecccccccccccCcEEEEEEEEcc------c--cc-----ceEEEEEEEEeecCcceEhhhh-CC-E-EEEee-
Confidence 577888853222 1 156777666521 0 11 1467777888889999999977 33 4 44433
Q ss_pred CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCc
Q 015484 137 SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHES 216 (406)
Q Consensus 137 dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 216 (406)
.+.|.+|++..... ..+...+. ....+.++... ++ +++.|+....+.++..+... ..+..+.. .....
T Consensus 106 g~~l~v~~l~~~~~-----l~~~~~~~-~~~~i~sl~~~--~~-~I~vgD~~~sv~~~~~~~~~--~~l~~va~-d~~~~ 173 (321)
T PF03178_consen 106 GNKLYVYDLDNSKT-----LLKKAFYD-SPFYITSLSVF--KN-YILVGDAMKSVSLLRYDEEN--NKLILVAR-DYQPR 173 (321)
T ss_dssp TTEEEEEEEETTSS-----EEEEEEE--BSSSEEEEEEE--TT-EEEEEESSSSEEEEEEETTT--E-EEEEEE-ESS-B
T ss_pred cCEEEEEEccCccc-----chhhheec-ceEEEEEEecc--cc-EEEEEEcccCEEEEEEEccC--CEEEEEEe-cCCCc
Confidence 47799999988430 11122222 22255555554 55 89999988888888665421 22222221 22355
Q ss_pred cEEEEEeeCCCCCEEEEEecCCcEEEEECCCC-------c-ccccc--cccCCCeeEE---EecCC--CC-----cEEEE
Q 015484 217 VVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN-------Q-TQQRV--KAHEKEVNYL---SFNPY--NE-----WVLAT 276 (406)
Q Consensus 217 ~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~-------~-~~~~~--~~~~~~v~~i---~~~~~--~~-----~~l~~ 276 (406)
.++++.|-+++ +.++++..+|.+.++..... . .+... -.....|+++ ++.|. +. ..++.
T Consensus 174 ~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~ 252 (321)
T PF03178_consen 174 WVTAAEFLVDE-DTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILY 252 (321)
T ss_dssp EEEEEEEE-SS-SEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEE
T ss_pred cEEEEEEecCC-cEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEE
Confidence 68888888644 58889999999999987631 1 11111 1134567777 55552 22 14777
Q ss_pred EeCCCcEEEE
Q 015484 277 ASSDTTVALF 286 (406)
Q Consensus 277 ~~~dg~i~vw 286 (406)
++.+|.|.+.
T Consensus 253 ~T~~G~Ig~l 262 (321)
T PF03178_consen 253 GTVDGSIGVL 262 (321)
T ss_dssp EETTS-EEEE
T ss_pred EecCCEEEEE
Confidence 7888888743
No 362
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.40 E-value=0.028 Score=54.63 Aligned_cols=235 Identities=12% Similarity=0.082 Sum_probs=121.1
Q ss_pred cEEEEEeCCC------eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC------CeEEEEeC
Q 015484 129 NLVGTKTSSC------EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD------NKICLWDV 196 (406)
Q Consensus 129 ~~l~~~~~dg------~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d------g~i~iwd~ 196 (406)
.+++.|+..+ .+..||..... +.....+.. ...-.+++... +. ..++|+.| .++..||.
T Consensus 286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~------w~~~a~m~~-~r~~~~~~~~~-~~-lYv~GG~~~~~~~l~~ve~YD~ 356 (571)
T KOG4441|consen 286 KLVAVGGYNRQGQSLRSVECYDPKTNE------WSSLAPMPS-PRCRVGVAVLN-GK-LYVVGGYDSGSDRLSSVERYDP 356 (571)
T ss_pred eEEEECCCCCCCcccceeEEecCCcCc------EeecCCCCc-ccccccEEEEC-CE-EEEEccccCCCcccceEEEecC
Confidence 5677777763 57788887742 222333332 22233455543 44 78888888 35667777
Q ss_pred CCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCc-----EEEEECCCCcccccccccCCCeeEEEecC-CC
Q 015484 197 SALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQ-----LMIWDLRTNQTQQRVKAHEKEVNYLSFNP-YN 270 (406)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~v~~i~~~~-~~ 270 (406)
....- ..+.......... .++. -++.+.|+||.||. +-.||.++.+.-..-. ............ +|
T Consensus 357 ~~~~W----~~~a~M~~~R~~~-~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g 428 (571)
T KOG4441|consen 357 RTNQW----TPVAPMNTKRSDF-GVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGG 428 (571)
T ss_pred CCCce----eccCCccCccccc-eeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECC
Confidence 76542 1111111111111 1222 26889999998875 6678877665422111 111222222222 34
Q ss_pred CcEEEEEeCCC------cEEEEeCCCCCC-CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCc-----EEEEeCCCCCcc
Q 015484 271 EWVLATASSDT------TVALFDMRKMTV-PLHILSSHTEEVFQVEWDPNHETVLASSADDRR-----LMVWDLNRIGDE 338 (406)
Q Consensus 271 ~~~l~~~~~dg------~i~vwd~~~~~~-~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~-----i~iwd~~~~~~~ 338 (406)
. +.++|+.++ ++..||..+..- .+..+..-..... ++.- ++ .+.+.||.|+. |..||..+..
T Consensus 429 ~-iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~-~~-~iYvvGG~~~~~~~~~VE~ydp~~~~-- 502 (571)
T KOG4441|consen 429 K-LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL-NG-KIYVVGGFDGTSALSSVERYDPETNQ-- 502 (571)
T ss_pred E-EEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEE-CC-EEEEECCccCCCccceEEEEcCCCCc--
Confidence 4 788888654 567888876431 1111211111111 2222 23 47788887763 5667665511
Q ss_pred cccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCC-----cEEEEeCCCcccCCCcc
Q 015484 339 QLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDN-----TVQVWQMTDSIYRDDDD 399 (406)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg-----~i~iw~~~~~~~~~~~~ 399 (406)
...+.........+..+.+ ++. +.+.|+.|| +|..||+.++.+....+
T Consensus 503 ----------W~~v~~m~~~rs~~g~~~~--~~~-ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 503 ----------WTMVAPMTSPRSAVGVVVL--GGK-LYAVGGFDGNNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred ----------eeEcccCccccccccEEEE--CCE-EEEEecccCccccceeEEcCCCCCceeeCCC
Confidence 1222212222222222222 233 788888875 58899999988876554
No 363
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.082 Score=48.85 Aligned_cols=201 Identities=15% Similarity=0.107 Sum_probs=128.6
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec--CCCeEEE
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS--HDNKICL 193 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~--~dg~i~i 193 (406)
..-..++.++.+....++...++.|.+.|...... ..... -...-..++++++++...++-. .++++.+
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~--------~~~~~-vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsv 144 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV--------LGSIP-VGLGPVGLAVDPDGKYVYVANAGNGNNTVSV 144 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccce--------eeEee-eccCCceEEECCCCCEEEEEecccCCceEEE
Confidence 44567788888877777777788999999665221 11111 1125568999999973444434 3688888
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccc-c----ccccCCCeeEEEecC
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ-R----VKAHEKEVNYLSFNP 268 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~-~----~~~~~~~v~~i~~~~ 268 (406)
.|..+..... ....-..+ ..+++.|.+...+++-..++.|.+.|........ . .. ....-..+.++|
T Consensus 145 id~~t~~~~~------~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~~~~P~~i~v~~ 216 (381)
T COG3391 145 IDAATNKVTA------TIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-VGTGPAGIAVDP 216 (381)
T ss_pred EeCCCCeEEE------EEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc-cCCCCceEEECC
Confidence 8877654321 11111233 7889999666677666789999999977655442 1 21 222335688999
Q ss_pred CCCcEEEEEeCC--CcEEEEeCCCCCCCcEE-ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 269 YNEWVLATASSD--TTVALFDMRKMTVPLHI-LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 269 ~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~-~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
++....++...+ +.+...|...... ... ..........+..+|++..+.+.-+..+.+.+-|...
T Consensus 217 ~g~~~yV~~~~~~~~~v~~id~~~~~v-~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 217 DGNRVYVANDGSGSNNVLKIDTATGNV-TATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred CCCEEEEEeccCCCceEEEEeCCCceE-EEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence 999555555444 5888888887553 222 1211114667899999986444445568888888776
No 364
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.31 E-value=0.11 Score=46.94 Aligned_cols=141 Identities=15% Similarity=0.199 Sum_probs=69.5
Q ss_pred EEcCCCCcEEEEEeCCCe--EEEEeCCCccccccCCCCCceeeeCCC-CCeeEEEecCCCCCeEEEecCCCeEEEEeCCC
Q 015484 122 RCMPQKPNLVGTKTSSCE--VYVFDCAKQAEKQQDDCDPDLRLKGHD-KEGYGLSWSPFKEGYLVSGSHDNKICLWDVSA 198 (406)
Q Consensus 122 ~~~p~~~~~l~~~~~dg~--i~iw~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~ 198 (406)
+|.++|..+|.++..+|. +++.|+.+.. +..|.... .......++++++ .++-......|+-.|+.+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~---------i~QLTdg~g~~~~g~~~s~~~~-~~~Yv~~~~~l~~vdL~T 111 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGE---------ITQLTDGPGDNTFGGFLSPDDR-ALYYVKNGRSLRRVDLDT 111 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-E---------EEE---SS-B-TTT-EE-TTSS-EEEEEETTTEEEEEETTT
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCE---------EEECccCCCCCccceEEecCCC-eEEEEECCCeEEEEECCc
Confidence 567788777777776764 5556666633 23333322 2233566778776 665554556888889988
Q ss_pred ccCCceeeeeeeeeccCccEEEEEeeC-CCCCEEEEEe---c-------------------CCcEEEEECCCCccccccc
Q 015484 199 LAQDKVIDAMHVYEAHESVVEDVSWHL-KNENLFGSAG---D-------------------DCQLMIWDLRTNQTQQRVK 255 (406)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~i~~i~~~p-~~~~~l~~~~---~-------------------dg~i~i~d~~~~~~~~~~~ 255 (406)
.+.. ..+......+-...|.. .+...++..- . ...|.-.|+++++....+.
T Consensus 112 ~e~~------~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~ 185 (386)
T PF14583_consen 112 LEER------VVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE 185 (386)
T ss_dssp --EE------EEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE
T ss_pred CcEE------EEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe
Confidence 6432 22222333343344532 2344443221 1 1235556777766533333
Q ss_pred ccCCCeeEEEecCCCCcEEEEEeC
Q 015484 256 AHEKEVNYLSFNPYNEWVLATASS 279 (406)
Q Consensus 256 ~~~~~v~~i~~~~~~~~~l~~~~~ 279 (406)
....+..+.|+|..+.+|+-|.+
T Consensus 186 -~~~wlgH~~fsP~dp~li~fCHE 208 (386)
T PF14583_consen 186 -DTDWLGHVQFSPTDPTLIMFCHE 208 (386)
T ss_dssp -ESS-EEEEEEETTEEEEEEEEE-
T ss_pred -cCccccCcccCCCCCCEEEEecc
Confidence 45667889999988866666554
No 365
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.24 E-value=0.0012 Score=53.82 Aligned_cols=141 Identities=16% Similarity=0.197 Sum_probs=79.0
Q ss_pred EEEEEecCCcEEEEECCCCcccccc-cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEE
Q 015484 230 LFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQV 308 (406)
Q Consensus 230 ~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i 308 (406)
.+...+.||.|+-++++..+....- ..+.....-+.+ +. -+++|+.+|.|.+|..............-...|.++
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~---~~-~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~ 107 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTA---SA-KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG 107 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeeccc---Cc-eEEeecccceEEEecCCccchHHHhhhcccccceec
Confidence 3445677888888887754432111 111111111122 23 689999999999998873322111122222333333
Q ss_pred EEcCCCCC--EEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCC-CCeeeEEeCCCCCcEEEEE--eCCCc
Q 015484 309 EWDPNHET--VLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHK-AKISDFSWNKNDPWVISSV--ADDNT 383 (406)
Q Consensus 309 ~~~p~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~~l~s~--~~dg~ 383 (406)
- |.++. +..+++.||.|+.|++.. .+.+-....|. .++..+..+..++ +++.+ +.|..
T Consensus 108 I--p~~~~~~~~c~~~~dg~ir~~n~~p--------------~k~~g~~g~h~~~~~e~~ivv~sd~-~i~~a~~S~d~~ 170 (238)
T KOG2444|consen 108 I--PNGRDSSLGCVGAQDGRIRACNIKP--------------NKVLGYVGQHNFESGEELIVVGSDE-FLKIADTSHDRV 170 (238)
T ss_pred c--ccccccceeEEeccCCceeeecccc--------------CceeeeeccccCCCcceeEEecCCc-eEEeeccccchh
Confidence 2 33333 788999999999999875 33444444455 4455555555555 45555 66666
Q ss_pred EEEEeCCC
Q 015484 384 VQVWQMTD 391 (406)
Q Consensus 384 i~iw~~~~ 391 (406)
++.|++..
T Consensus 171 ~k~W~ve~ 178 (238)
T KOG2444|consen 171 LKKWNVEK 178 (238)
T ss_pred hhhcchhh
Confidence 77776653
No 366
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.18 E-value=0.0017 Score=39.30 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=31.4
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAK 147 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~ 147 (406)
.........|.+++|+|.. ++||.++.+|.|.||.+.-
T Consensus 5 ~~~k~l~~~v~~~~w~P~m-dLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 5 LGEKNLPSRVSCMSWCPTM-DLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred ecccCCCCcEEEEEECCCC-CEEEEEECCCeEEEEECCC
Confidence 3334455779999999998 6999999999999999943
No 367
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.16 E-value=0.15 Score=45.23 Aligned_cols=201 Identities=10% Similarity=0.076 Sum_probs=112.2
Q ss_pred EEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc
Q 015484 171 GLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT 250 (406)
Q Consensus 171 ~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~ 250 (406)
+-.|.+....++.+--..+.|.-|+..++.. ..+. +...+.++..-. .+..|+++. . .+.+++.+++..
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-------~~~~-~p~~~~~~~~~d-~~g~Lv~~~-~-g~~~~~~~~~~~ 97 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKK-------RVFP-SPGGFSSGALID-AGGRLIACE-H-GVRLLDPDTGGK 97 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCce-------EEEE-CCCCcccceeec-CCCeEEEEc-c-ccEEEeccCCce
Confidence 3457776664556666678899998876532 2222 233444444432 344443333 2 366677655544
Q ss_pred cccc-----cccCCCeeEEEecCCCCcEEEEEe-----C-----CCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCC
Q 015484 251 QQRV-----KAHEKEVNYLSFNPYNEWVLATAS-----S-----DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHE 315 (406)
Q Consensus 251 ~~~~-----~~~~~~v~~i~~~~~~~~~l~~~~-----~-----dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~ 315 (406)
+..+ .......+.+...|+|..++-+-+ . -|.|+.+|. . .........+-..-+.|+|+|+++
T Consensus 98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~-g~~~~l~~~~~~~~NGla~SpDg~ 175 (307)
T COG3386 98 ITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-D-GGVVRLLDDDLTIPNGLAFSPDGK 175 (307)
T ss_pred eEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-C-CCEEEeecCcEEecCceEECCCCC
Confidence 2222 112245667888999983332222 1 133444443 2 222444555556678999999998
Q ss_pred CEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCC-cEEEEeCCCc
Q 015484 316 TVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDN-TVQVWQMTDS 392 (406)
Q Consensus 316 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg-~i~iw~~~~~ 392 (406)
.++++=+..+.|.-|++....-. ..+ ...........+..-.++...+|. +.+++..+| .|.+|++...
T Consensus 176 tly~aDT~~~~i~r~~~d~~~g~------~~~-~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pdG~ 245 (307)
T COG3386 176 TLYVADTPANRIHRYDLDPATGP------IGG-RRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPDGK 245 (307)
T ss_pred EEEEEeCCCCeEEEEecCcccCc------cCC-cceEEEccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCCCc
Confidence 76666677788988888631100 011 122222333455667788888888 454444443 8999998843
No 368
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.022 Score=56.82 Aligned_cols=100 Identities=16% Similarity=0.196 Sum_probs=68.2
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeee
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAM 208 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 208 (406)
..++.|+..|.|...|.... ..+...-..-.++|++++|+.+|. +++.|-.+|.|.+||+..++..
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~n-------L~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k~l------ 165 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGN-------LGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAKIL------ 165 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcc-------cchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCcce------
Confidence 46889999999999988762 333233333458999999999999 9999999999999999886443
Q ss_pred eeeeccCccEEE---EEeeCCCCCEEEEEecCCcEEEEEC
Q 015484 209 HVYEAHESVVED---VSWHLKNENLFGSAGDDCQLMIWDL 245 (406)
Q Consensus 209 ~~~~~~~~~i~~---i~~~p~~~~~l~~~~~dg~i~i~d~ 245 (406)
+.+..|..+.+. +.+.. ++..+.++...|. +|.+
T Consensus 166 ~~i~e~~ap~t~vi~v~~t~-~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 166 KVITEHGAPVTGVIFVGRTS-QNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eeeeecCCccceEEEEEEeC-CCcEEEEccCCCc--eEEE
Confidence 333333333333 33333 3456667777775 4544
No 369
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.08 E-value=0.25 Score=46.05 Aligned_cols=189 Identities=8% Similarity=0.023 Sum_probs=93.6
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
..+.+ +.|-++.|..+. . |++-..||.+++||+.... ... -........-....+....+...|- .+++ .++
T Consensus 76 i~w~~-~~iv~~~wt~~e-~-LvvV~~dG~v~vy~~~G~~-~fs-l~~~i~~~~v~e~~i~~~~~~~~Gi-vvLt--~~~ 147 (410)
T PF04841_consen 76 IPWDS-GRIVGMGWTDDE-E-LVVVQSDGTVRVYDLFGEF-QFS-LGEEIEEEKVLECRIFAIWFYKNGI-VVLT--GNN 147 (410)
T ss_pred EEECC-CCEEEEEECCCC-e-EEEEEcCCEEEEEeCCCce-eec-hhhhccccCcccccccccccCCCCE-EEEC--CCC
Confidence 34444 899999999865 3 5566799999999987532 000 0001111111122232333332332 2233 334
Q ss_pred eEEEEe-CCCccCCceee---e-eeeeeccCccEEE-EEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeE
Q 015484 190 KICLWD-VSALAQDKVID---A-MHVYEAHESVVED-VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNY 263 (406)
Q Consensus 190 ~i~iwd-~~~~~~~~~~~---~-~~~~~~~~~~i~~-i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 263 (406)
.+.+.. .......+.+. . ......+. .... ..++. +....+....++.+.+.+-...+. +. ..+++..
T Consensus 148 ~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~-~~~~i~~l~~-~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~ 221 (410)
T PF04841_consen 148 RFYVVNNIDEPVKLRRLPEIPGLWTKFHWWP-SWTVIPLLSS-DRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIK 221 (410)
T ss_pred eEEEEeCccccchhhccccCCCccccccccc-ccccceEeec-CcceEEEEecCCEEEEEEcccccc---cc-CCCCeEE
Confidence 443332 22110000000 0 00000011 1111 22333 344444555556666554332211 22 3468999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCC-CCCeEEEEEcCCC
Q 015484 264 LSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSH-TEEVFQVEWDPNH 314 (406)
Q Consensus 264 i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h-~~~v~~i~~~p~~ 314 (406)
|+.||+++ ++|.-..+|.+.+....-.+. +..+... ......+.|+.++
T Consensus 222 iavSpng~-~iAl~t~~g~l~v~ssDf~~~-~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 222 IAVSPNGK-FIALFTDSGNLWVVSSDFSEK-LCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred EEECCCCC-EEEEEECCCCEEEEECcccce-eEEeecCcCCCCcEEEEECCC
Confidence 99999999 888888999999887544332 4444332 3466778887665
No 370
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.0052 Score=61.04 Aligned_cols=102 Identities=19% Similarity=0.313 Sum_probs=69.6
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeE
Q 015484 273 VLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELL 352 (406)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (406)
.++.|+..|.+...|++..-.+...-..-.++|++++|+.+|. +++.|-.+|.|.+||+..... ...+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k~-----------l~~i 168 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAKI-----------LKVI 168 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCcc-----------eeee
Confidence 6888999999999999875444444445568999999999997 688999999999999987221 1222
Q ss_pred EEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 353 FSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 353 ~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
..+......|..+.|..++. .+.++..-|. +|++
T Consensus 169 ~e~~ap~t~vi~v~~t~~nS-~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 169 TEHGAPVTGVIFVGRTSQNS-KLLTSDTGGS--FWKL 202 (1206)
T ss_pred eecCCccceEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence 22222222344445555555 6777776675 5654
No 371
>PHA02713 hypothetical protein; Provisional
Probab=97.00 E-value=0.084 Score=51.38 Aligned_cols=189 Identities=7% Similarity=0.093 Sum_probs=91.4
Q ss_pred eEEEecCC------CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC-----cEEEEECCCCc
Q 015484 181 YLVSGSHD------NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC-----QLMIWDLRTNQ 249 (406)
Q Consensus 181 ~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg-----~i~i~d~~~~~ 249 (406)
..+.|+.+ ..+..||..+..- ..+.......... +++.. ++.+++.||.++ .+..||..+.+
T Consensus 306 IYviGG~~~~~~~~~~v~~Yd~~~n~W----~~~~~m~~~R~~~-~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 306 IIIAGGYNFNNPSLNKVYKINIENKIH----VELPPMIKNRCRF-SLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred EEEEcCCCCCCCccceEEEEECCCCeE----eeCCCCcchhhce-eEEEE--CCEEEEECCcCCCCCCceEEEEECCCCe
Confidence 67777753 3467788766421 1111111111111 22222 578888888764 37889988764
Q ss_pred cc--ccccccCCCeeEEEecCCCCcEEEEEeCCC-----------------------cEEEEeCCCCCC-CcEEecCCCC
Q 015484 250 TQ--QRVKAHEKEVNYLSFNPYNEWVLATASSDT-----------------------TVALFDMRKMTV-PLHILSSHTE 303 (406)
Q Consensus 250 ~~--~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg-----------------------~i~vwd~~~~~~-~~~~~~~h~~ 303 (406)
-. ..+.........+.. ++. +.+.|+.++ .+..||..+..- .+..+.....
T Consensus 379 W~~~~~mp~~r~~~~~~~~--~g~-IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~ 455 (557)
T PHA02713 379 WKMLPDMPIALSSYGMCVL--DQY-IYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI 455 (557)
T ss_pred EEECCCCCcccccccEEEE--CCE-EEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccc
Confidence 32 222211111222222 354 777777542 477788775421 1111111111
Q ss_pred CeEEEEEcCCCCCEEEEEeCCC------cEEEEeCCC-CCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEE
Q 015484 304 EVFQVEWDPNHETVLASSADDR------RLMVWDLNR-IGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVIS 376 (406)
Q Consensus 304 ~v~~i~~~p~~~~~l~s~~~dg------~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~ 376 (406)
....+.+ ++ .+.+.|+.++ .+..||..+ .. ...+............+.. ++. +.+
T Consensus 456 ~~~~~~~--~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~------------W~~~~~m~~~r~~~~~~~~--~~~-iyv 517 (557)
T PHA02713 456 RPGVVSH--KD-DIYVVCDIKDEKNVKTCIFRYNTNTYNG------------WELITTTESRLSALHTILH--DNT-IMM 517 (557)
T ss_pred cCcEEEE--CC-EEEEEeCCCCCCccceeEEEecCCCCCC------------eeEccccCcccccceeEEE--CCE-EEE
Confidence 1111222 23 3566666542 356677664 11 1111111111111222222 445 888
Q ss_pred EEeCCC--cEEEEeCCCcccCCC
Q 015484 377 SVADDN--TVQVWQMTDSIYRDD 397 (406)
Q Consensus 377 s~~~dg--~i~iw~~~~~~~~~~ 397 (406)
.||.|+ .+..||+.++.+...
T Consensus 518 ~Gg~~~~~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 518 LHCYESYMLQDTFNVYTYEWNHI 540 (557)
T ss_pred EeeecceeehhhcCcccccccch
Confidence 999888 788899988877643
No 372
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.85 E-value=0.13 Score=43.26 Aligned_cols=105 Identities=5% Similarity=0.015 Sum_probs=72.2
Q ss_pred CCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCC
Q 015484 225 LKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEE 304 (406)
Q Consensus 225 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~ 304 (406)
++...+++.|+..+.+...|..+++....-. -...+.+-+.- -|+ +++.|...|.+++.+..++.+ ...+..-..-
T Consensus 20 ~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgd-fVV~GCy~g~lYfl~~~tGs~-~w~f~~~~~v 95 (354)
T KOG4649|consen 20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGD-FVVLGCYSGGLYFLCVKTGSQ-IWNFVILETV 95 (354)
T ss_pred cCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECC-EEEEEEccCcEEEEEecchhh-eeeeeehhhh
Confidence 3456788889999999999999888653321 11222222221 255 789999999999999999765 4444332222
Q ss_pred eEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 305 VFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 305 v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
-.+....+++. ++..|+.|+..+..|.++
T Consensus 96 k~~a~~d~~~g-lIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 96 KVRAQCDFDGG-LIYCGSHDGNFYALDPKT 124 (354)
T ss_pred ccceEEcCCCc-eEEEecCCCcEEEecccc
Confidence 23345667775 799999999999999887
No 373
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=0.036 Score=55.71 Aligned_cols=151 Identities=9% Similarity=0.024 Sum_probs=91.1
Q ss_pred CCeeEEEecCCCCC-eEEEecCCCeEEEEeCCCccCCcee--eee---eeeeccCccEEEEEeeCCCCCEEEEEecCCcE
Q 015484 167 KEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVI--DAM---HVYEAHESVVEDVSWHLKNENLFGSAGDDCQL 240 (406)
Q Consensus 167 ~~v~~l~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~--~~~---~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i 240 (406)
-++..+..++++.- .++..+++-.|..||+++-...... .++ ...........++.|+|.-....+++..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 34555555665441 2333344447889998764322111 111 11111223456788998666677788899999
Q ss_pred EEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC-CcEEecC-CCCCeEEEEEcCCCCCEE
Q 015484 241 MIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV-PLHILSS-HTEEVFQVEWDPNHETVL 318 (406)
Q Consensus 241 ~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~-h~~~v~~i~~~p~~~~~l 318 (406)
++..+........--.....+++++|+|.|. .++.|...|++.-|...-... .+..... ....|.+|+|-.....++
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGK-Ql~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGK-QLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccc-eeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 9887765433222223456789999999999 899999999999887543210 0111101 146899999988776433
No 374
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.78 E-value=0.35 Score=42.94 Aligned_cols=249 Identities=12% Similarity=0.067 Sum_probs=120.4
Q ss_pred EEEEcCCCCcEEEEEe----------CCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEe--cC
Q 015484 120 RARCMPQKPNLVGTKT----------SSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSG--SH 187 (406)
Q Consensus 120 ~i~~~p~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~--~~ 187 (406)
.+..+|+++. +.+++ ..-.|.+||..+.....+-...+..... .......++++.+++ +++.. +-
T Consensus 40 ~~~~spdgk~-~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~-~~~~~~~~~ls~dgk-~~~V~N~TP 116 (342)
T PF06433_consen 40 NVALSPDGKT-IYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ-VVPYKNMFALSADGK-FLYVQNFTP 116 (342)
T ss_dssp EEEE-TTSSE-EEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B---BS--GGGEEE-TTSS-EEEEEEESS
T ss_pred ceeECCCCCE-EEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe-ecccccceEEccCCc-EEEEEccCC
Confidence 3567898854 44432 2346999999985332210011100000 001223456777776 54443 33
Q ss_pred CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECC-CCcccccc----cccCCCe-
Q 015484 188 DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR-TNQTQQRV----KAHEKEV- 261 (406)
Q Consensus 188 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~----~~~~~~v- 261 (406)
-.+|.|-|+...+.. ..+.. . -|...-|.++.-|.+-|.||.+.-..+. .|+...+. .....++
T Consensus 117 a~SVtVVDl~~~kvv------~ei~~-P---GC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f 186 (342)
T PF06433_consen 117 ATSVTVVDLAAKKVV------GEIDT-P---GCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLF 186 (342)
T ss_dssp SEEEEEEETTTTEEE------EEEEG-T---SEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-
T ss_pred CCeEEEEECCCCcee------eeecC-C---CEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccc
Confidence 456777787765322 11111 1 1222234455668888999999988887 34443211 1112222
Q ss_pred eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCC-cEEecCC----------CCCeEEEEEcCCCCCEEEEEe--C-----
Q 015484 262 NYLSFNPYNEWVLATASSDTTVALFDMRKMTVP-LHILSSH----------TEEVFQVEWDPNHETVLASSA--D----- 323 (406)
Q Consensus 262 ~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~h----------~~~v~~i~~~p~~~~~l~s~~--~----- 323 (406)
..-++...+. .++--+..|.|+-.|+...... ......- .+.-.-+++++..+.+.+.-. .
T Consensus 187 ~~~~~~~~~~-~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHK 265 (342)
T PF06433_consen 187 EHPAYSRDGG-RLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHK 265 (342)
T ss_dssp S--EEETTTT-EEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TT
T ss_pred cccceECCCC-eEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCcc
Confidence 2223333444 3444677899998888764311 1111100 012233555554433222211 1
Q ss_pred CC--cEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEE-EeCCCcEEEEeCCCcccCCC
Q 015484 324 DR--RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISS-VADDNTVQVWQMTDSIYRDD 397 (406)
Q Consensus 324 dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s-~~~dg~i~iw~~~~~~~~~~ 397 (406)
|+ .|-++|+.+ .+.+..+.. ..++.+|..+.+.+-+|++ ...++.|.+||..++.+...
T Consensus 266 dpgteVWv~D~~t--------------~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 266 DPGTEVWVYDLKT--------------HKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRS 327 (342)
T ss_dssp S-EEEEEEEETTT--------------TEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred CCceEEEEEECCC--------------CeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence 11 255555554 233433331 2357789998876535544 45689999999999876443
No 375
>PHA02713 hypothetical protein; Provisional
Probab=96.74 E-value=0.06 Score=52.38 Aligned_cols=184 Identities=7% Similarity=0.028 Sum_probs=89.6
Q ss_pred cEEEEEeCC------CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC-----eEEEEeCC
Q 015484 129 NLVGTKTSS------CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN-----KICLWDVS 197 (406)
Q Consensus 129 ~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-----~i~iwd~~ 197 (406)
.+.+.|+.+ ..+..||..... +.....+....... +++.. ++. +.+.||.++ ++..||..
T Consensus 305 ~IYviGG~~~~~~~~~~v~~Yd~~~n~------W~~~~~m~~~R~~~-~~~~~-~g~-IYviGG~~~~~~~~sve~Ydp~ 375 (557)
T PHA02713 305 EIIIAGGYNFNNPSLNKVYKINIENKI------HVELPPMIKNRCRF-SLAVI-DDT-IYAIGGQNGTNVERTIECYTMG 375 (557)
T ss_pred EEEEEcCCCCCCCccceEEEEECCCCe------EeeCCCCcchhhce-eEEEE-CCE-EEEECCcCCCCCCceEEEEECC
Confidence 567777753 347778876632 22222222111111 22222 244 677777654 47788887
Q ss_pred CccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC-----------------------cEEEEECCCCccc--c
Q 015484 198 ALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC-----------------------QLMIWDLRTNQTQ--Q 252 (406)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg-----------------------~i~i~d~~~~~~~--~ 252 (406)
+.. +..+............++. ++.+++.||.++ .+..||.++.+-. .
T Consensus 376 ~~~----W~~~~~mp~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~ 448 (557)
T PHA02713 376 DDK----WKMLPDMPIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP 448 (557)
T ss_pred CCe----EEECCCCCcccccccEEEE---CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecC
Confidence 642 1111111111111112222 577888887653 4777888776432 2
Q ss_pred cccccCCCeeEEEecCCCCcEEEEEeCCC------cEEEEeCCC-CC-CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCC
Q 015484 253 RVKAHEKEVNYLSFNPYNEWVLATASSDT------TVALFDMRK-MT-VPLHILSSHTEEVFQVEWDPNHETVLASSADD 324 (406)
Q Consensus 253 ~~~~~~~~v~~i~~~~~~~~~l~~~~~dg------~i~vwd~~~-~~-~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d 324 (406)
.+.........+.+ ++. +.+.|+.++ .+..||..+ .. ..+..+.........+.+ ++ .+.++|+.+
T Consensus 449 ~m~~~r~~~~~~~~--~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~-~iyv~Gg~~ 522 (557)
T PHA02713 449 NFWTGTIRPGVVSH--KDD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DN-TIMMLHCYE 522 (557)
T ss_pred CCCcccccCcEEEE--CCE-EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CC-EEEEEeeec
Confidence 22111111112222 344 677776542 467899886 22 122333332333333333 33 478899988
Q ss_pred C--cEEEEeCCC
Q 015484 325 R--RLMVWDLNR 334 (406)
Q Consensus 325 g--~i~iwd~~~ 334 (406)
| .+..||..+
T Consensus 523 ~~~~~e~yd~~~ 534 (557)
T PHA02713 523 SYMLQDTFNVYT 534 (557)
T ss_pred ceeehhhcCccc
Confidence 8 566666655
No 376
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.73 E-value=0.044 Score=51.35 Aligned_cols=152 Identities=11% Similarity=0.226 Sum_probs=94.2
Q ss_pred CCeeEEEecCCCCCeEEEec--CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCC----CCCEEEEEecCCcE
Q 015484 167 KEGYGLSWSPFKEGYLVSGS--HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLK----NENLFGSAGDDCQL 240 (406)
Q Consensus 167 ~~v~~l~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~----~~~~l~~~~~dg~i 240 (406)
.++.+++|.. |+..++|.- .+|.+++=|-. .+ +.-..|..+.|.|- ...+| +......|
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGds~---------vi----GqFEhV~GlsW~P~~~~~~paLL-AVQHkkhV 84 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGDSK---------VI----GQFEHVHGLSWAPPCTADTPALL-AVQHKKHV 84 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccCCcc---------Ee----eccceeeeeeecCcccCCCCceE-EEeccceE
Confidence 5788999975 553555542 23333322211 11 22245888999884 23455 56667899
Q ss_pred EEEECCCC-----cccccccc-----cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEE
Q 015484 241 MIWDLRTN-----QTQQRVKA-----HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEW 310 (406)
Q Consensus 241 ~i~d~~~~-----~~~~~~~~-----~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~ 310 (406)
.+|.+... +.+..-.. ..---..+.|+|... +|++-.....-.+++++.....++.--...+.|.|.+|
T Consensus 85 tVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACW 163 (671)
T PF15390_consen 85 TVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACW 163 (671)
T ss_pred EEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEe
Confidence 99998622 22111100 011123467999998 77776665555667777655555544456789999999
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 311 DPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 311 ~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
.++|+.++++.+..=.-+|||-..
T Consensus 164 T~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 164 TKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred cCcCCEEEEEeCCeEEEEEecCch
Confidence 999998887777777788898543
No 377
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.73 E-value=0.38 Score=46.99 Aligned_cols=191 Identities=13% Similarity=0.090 Sum_probs=97.9
Q ss_pred CCCCeeEEEecCCCCCeEEEec------CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe---
Q 015484 165 HDKEGYGLSWSPFKEGYLVSGS------HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG--- 235 (406)
Q Consensus 165 h~~~v~~l~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~--- 235 (406)
....+.+.+.+|+|. .++..- .|..-.+|-...+..... + ..+ .....-.|+|+ +..+.+..
T Consensus 348 ~~~~vsspaiSpdG~-~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~---l--t~g--~~~t~PsWspD-G~~lw~v~dg~ 418 (591)
T PRK13616 348 QMGNITSAALSRSGR-QVAAVVTLGRGAPDPASSLWVGPLGGVAVQ---V--LEG--HSLTRPSWSLD-ADAVWVVVDGN 418 (591)
T ss_pred cccCcccceECCCCC-EEEEEEeecCCCCCcceEEEEEeCCCccee---e--ecC--CCCCCceECCC-CCceEEEecCc
Confidence 334678899999998 554443 244334443332221111 1 112 23677789984 34333332
Q ss_pred ---------cCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEE---EeCCCCCCCc---EEe-c
Q 015484 236 ---------DDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVAL---FDMRKMTVPL---HIL-S 299 (406)
Q Consensus 236 ---------~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~v---wd~~~~~~~~---~~~-~ 299 (406)
..+.+.+.+++.+.... .....|..+.|+|+|.. ++... +|.|.+ -....+...+ ..+ .
T Consensus 419 ~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~R-iA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~ 493 (591)
T PRK13616 419 TVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVR-AAMII-GGKVYLAVVEQTEDGQYALTNPREVGP 493 (591)
T ss_pred ceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCE-EEEEE-CCEEEEEEEEeCCCCceeecccEEeec
Confidence 22344444555444332 23557999999999994 44433 467776 3322322111 112 2
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEe
Q 015484 300 SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVA 379 (406)
Q Consensus 300 ~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~ 379 (406)
.-...+.++.|.+++. ++ .+..++...+|.+.-.+.. ............+..++=++. . ++ .+.
T Consensus 494 ~l~~~~~~l~W~~~~~-L~-V~~~~~~~~v~~v~vDG~~-----------~~~~~~~n~~~~v~~vaa~~~-~-iy-v~~ 557 (591)
T PRK13616 494 GLGDTAVSLDWRTGDS-LV-VGRSDPEHPVWYVNLDGSN-----------SDALPSRNLSAPVVAVAASPS-T-VY-VTD 557 (591)
T ss_pred ccCCccccceEecCCE-EE-EEecCCCCceEEEecCCcc-----------ccccCCCCccCceEEEecCCc-e-EE-EEc
Confidence 2233468899999986 44 5555555556665542221 111111123456777777763 3 33 445
Q ss_pred CCCcEE
Q 015484 380 DDNTVQ 385 (406)
Q Consensus 380 ~dg~i~ 385 (406)
.+|.++
T Consensus 558 ~~g~~~ 563 (591)
T PRK13616 558 ARAVLQ 563 (591)
T ss_pred CCceEE
Confidence 566433
No 378
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.72 E-value=0.056 Score=46.00 Aligned_cols=111 Identities=15% Similarity=0.144 Sum_probs=74.3
Q ss_pred cEEEEEeeCCCCCEEEEEecCCc-EEEEECCCCcccccccccCC--CeeEEEecCCCCcEEEEEe----CCCcEEEEeCC
Q 015484 217 VVEDVSWHLKNENLFGSAGDDCQ-LMIWDLRTNQTQQRVKAHEK--EVNYLSFNPYNEWVLATAS----SDTTVALFDMR 289 (406)
Q Consensus 217 ~i~~i~~~p~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~--~v~~i~~~~~~~~~l~~~~----~dg~i~vwd~~ 289 (406)
....++++|..+.-++.+-.-|+ ..++|....+....+...++ ..-.-.|+|+|..+.++-. .-|.|-|||.+
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 34457788876776766666665 45789888777665532221 1223469999994444432 13689999999
Q ss_pred CCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEE
Q 015484 290 KMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVW 330 (406)
Q Consensus 290 ~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iw 330 (406)
..-..+..+..|.-....+.|.++|+. |+.+ +|-|..-
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~DGrt-lvva--nGGIeth 186 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMADGRT-LVVA--NGGIETH 186 (366)
T ss_pred cccceecccccCCcCcceeEEecCCcE-EEEe--CCceecc
Confidence 776667788888888899999999985 4443 3445444
No 379
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.71 E-value=0.18 Score=47.55 Aligned_cols=129 Identities=16% Similarity=0.198 Sum_probs=78.1
Q ss_pred EEeecCCceeEEEEcCC----CCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee-CC--CCC--eeEEEecCCCCC
Q 015484 110 QKIRVDGEVNRARCMPQ----KPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK-GH--DKE--GYGLSWSPFKEG 180 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~h--~~~--v~~l~~~~~~~~ 180 (406)
+.++.-..|..+.|.|- -+.+||+-. ...|.||.+....... .+....-. .. .-+ -.++-|+|...
T Consensus 51 ~viGqFEhV~GlsW~P~~~~~~paLLAVQH-kkhVtVWqL~~s~~e~---~K~l~sQtcEi~e~~pvLpQGCVWHPk~~- 125 (671)
T PF15390_consen 51 KVIGQFEHVHGLSWAPPCTADTPALLAVQH-KKHVTVWQLCPSTTER---NKLLMSQTCEIREPFPVLPQGCVWHPKKA- 125 (671)
T ss_pred cEeeccceeeeeeecCcccCCCCceEEEec-cceEEEEEeccCcccc---ccceeeeeeeccCCcccCCCcccccCCCc-
Confidence 34555566999999994 456777754 5679999987432211 11111111 11 111 13677999887
Q ss_pred eEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC
Q 015484 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN 248 (406)
Q Consensus 181 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~ 248 (406)
.|+.-.....-.++++...... + ...+ ...+.|.|.+|.+++.+++++.+..=.-++||-...
T Consensus 126 iL~VLT~~dvSV~~sV~~d~sr--V--kaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 126 ILTVLTARDVSVLPSVHCDSSR--V--KADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred eEEEEecCceeEeeeeeeCCce--E--EEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 6666555444455666543321 1 1222 346789999999977788777777777889996544
No 380
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.62 E-value=0.0045 Score=50.66 Aligned_cols=104 Identities=15% Similarity=0.167 Sum_probs=63.7
Q ss_pred eEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccC-C
Q 015484 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHE-K 259 (406)
Q Consensus 181 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~ 259 (406)
.++.|+.+|.|.+|..+...... ..+..-...|-++.-.-+.+.+..+++.||.|+.|++.-.+.+.....|. .
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~-----d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~ 146 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHS-----DRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFE 146 (238)
T ss_pred eEEeecccceEEEecCCccchHH-----HhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCC
Confidence 79999999999999887321110 01111123343333333345588899999999999998877766665555 4
Q ss_pred CeeEEEecCCCCcEEEEE--eCCCcEEEEeCCC
Q 015484 260 EVNYLSFNPYNEWVLATA--SSDTTVALFDMRK 290 (406)
Q Consensus 260 ~v~~i~~~~~~~~~l~~~--~~dg~i~vwd~~~ 290 (406)
++........++ +++.. +.|..++.|++..
T Consensus 147 ~~e~~ivv~sd~-~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 147 SGEELIVVGSDE-FLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CcceeEEecCCc-eEEeeccccchhhhhcchhh
Confidence 444444444444 45555 5566666666654
No 381
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.62 E-value=0.92 Score=45.56 Aligned_cols=208 Identities=12% Similarity=0.116 Sum_probs=130.5
Q ss_pred CCCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCC--------------eEEEEeCCCccccccCCCCCceeeeCCC--
Q 015484 103 IPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSC--------------EVYVFDCAKQAEKQQDDCDPDLRLKGHD-- 166 (406)
Q Consensus 103 ~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg--------------~i~iw~~~~~~~~~~~~~~~~~~~~~h~-- 166 (406)
.+++.+.. ++-.....++++.+.. .++++.+... .++++|-++ ...+..|.
T Consensus 703 iqkl~irt-vpl~~~prrI~~q~~s-l~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nT-----------f~vl~~hef~ 769 (1096)
T KOG1897|consen 703 IQKLHIRT-VPLGESPRRICYQESS-LTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNT-----------FEVLSSHEFE 769 (1096)
T ss_pred hhhcceee-ecCCCChhheEecccc-eEEEEEecccccchhhcCCcceEEEEEEecCCc-----------eeEEeecccc
Confidence 35555554 6667788999999854 4455544321 244455444 23333333
Q ss_pred --C---CeeEEEecCCCCCeEEEecC----------CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEE
Q 015484 167 --K---EGYGLSWSPFKEGYLVSGSH----------DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLF 231 (406)
Q Consensus 167 --~---~v~~l~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l 231 (406)
. .|.++.|..+...+++.|.. .|.|.+|.+...+. ++.+.... -.+.+.++.-- +++++
T Consensus 770 ~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~---L~~v~e~~-v~Gav~aL~~f--ngkll 843 (1096)
T KOG1897|consen 770 RNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS---LELVAETV-VKGAVYALVEF--NGKLL 843 (1096)
T ss_pred ccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc---eeeeeeee-eccceeehhhh--CCeEE
Confidence 2 34455577764447777642 57888888877322 22222211 24556665543 56777
Q ss_pred EEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC--CcEEecCCCCCeEEEE
Q 015484 232 GSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV--PLHILSSHTEEVFQVE 309 (406)
Q Consensus 232 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~h~~~v~~i~ 309 (406)
|+- ...|++|+..+.+.++.-..+..++..+...-.++ .+++|..-+.+.+.-.+..+. ....-..+..+.+++.
T Consensus 844 A~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gd-eI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtave 920 (1096)
T KOG1897|consen 844 AGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGD-EIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVE 920 (1096)
T ss_pred Eec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCc-EEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEE
Confidence 544 45899999988877766666778888888888888 899999888887766655442 1222345677888888
Q ss_pred EcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 310 WDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 310 ~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
+-.+.. ++.+..+|.+.+-...+
T Consensus 921 il~~d~--ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 921 ILDDDT--YLGAENSGNLFTVRKDS 943 (1096)
T ss_pred EecCce--EEeecccccEEEEEecC
Confidence 876653 55666788888877665
No 382
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.61 E-value=0.39 Score=41.32 Aligned_cols=169 Identities=12% Similarity=0.179 Sum_probs=99.4
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeE
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKI 191 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 191 (406)
.+-...|.++.|+|+.+.++++....- -.|+=-..+ .......+.+- ...-+|.+...+. +.++--.++.+
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~-~iVElt~~G------dlirtiPL~g~-~DpE~Ieyig~n~-fvi~dER~~~l 152 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPA-AIVELTKEG------DLIRTIPLTGF-SDPETIEYIGGNQ-FVIVDERDRAL 152 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCc-eEEEEecCC------ceEEEeccccc-CChhHeEEecCCE-EEEEehhcceE
Confidence 344566999999999966555554443 333322221 12112233332 2234678887665 66666678888
Q ss_pred EEEeCCCccCCceee----eeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccc---ccccc-------c
Q 015484 192 CLWDVSALAQDKVID----AMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ---QRVKA-------H 257 (406)
Q Consensus 192 ~iwd~~~~~~~~~~~----~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~-------~ 257 (406)
.++.+.......... ++......+.....++|.|.+.. |..+-+-.-+.||.+...... ..... .
T Consensus 153 ~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~-l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f 231 (316)
T COG3204 153 YLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHR-LFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLF 231 (316)
T ss_pred EEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCce-EEEEEccCCcEEEEEecCCcccccccccCcccccceE
Confidence 888877653221111 11222222567889999995544 446666667888776643311 11111 1
Q ss_pred CCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 258 EKEVNYLSFNPYNEWVLATASSDTTVALFDMRK 290 (406)
Q Consensus 258 ~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~ 290 (406)
-..|.++.|++....+|+-+.+++.+.-.|...
T Consensus 232 ~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 232 VLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred eeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 245778889987776888888888888888764
No 383
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.55 E-value=0.69 Score=43.38 Aligned_cols=199 Identities=19% Similarity=0.223 Sum_probs=104.3
Q ss_pred eeEEEecCCCCCeEEEe-cCCC----eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC------
Q 015484 169 GYGLSWSPFKEGYLVSG-SHDN----KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD------ 237 (406)
Q Consensus 169 v~~l~~~~~~~~~l~s~-~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d------ 237 (406)
+..+.++|+++ +++.+ +..| .|+++|+.+++.. . ..+.. .....+.|.+++..++.+...+
T Consensus 126 ~~~~~~Spdg~-~la~~~s~~G~e~~~l~v~Dl~tg~~l---~--d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~ 197 (414)
T PF02897_consen 126 LGGFSVSPDGK-RLAYSLSDGGSEWYTLRVFDLETGKFL---P--DGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSD 197 (414)
T ss_dssp EEEEEETTTSS-EEEEEEEETTSSEEEEEEEETTTTEEE---E--EEEEE--EESEEEEECTTSSEEEEEECSTTTSS-C
T ss_pred eeeeeECCCCC-EEEEEecCCCCceEEEEEEECCCCcCc---C--Ccccc--cccceEEEeCCCCEEEEEEeCccccccc
Confidence 34678899998 55543 4444 5999999987321 1 11111 1122389998555555555333
Q ss_pred ----CcEEEEECCCCccc--ccccccCCC--eeEEEecCCCCcEEEEEeCCC---cEEEEeCCCC---CCCcEEecCCCC
Q 015484 238 ----CQLMIWDLRTNQTQ--QRVKAHEKE--VNYLSFNPYNEWVLATASSDT---TVALFDMRKM---TVPLHILSSHTE 303 (406)
Q Consensus 238 ----g~i~i~d~~~~~~~--~~~~~~~~~--v~~i~~~~~~~~~l~~~~~dg---~i~vwd~~~~---~~~~~~~~~h~~ 303 (406)
..|+.|.+.+.... ..+...... ...+..+++++++++...... .+.+.|+... ......+.....
T Consensus 198 ~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~ 277 (414)
T PF02897_consen 198 SGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED 277 (414)
T ss_dssp CGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred CCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence 23788888766443 233332222 567889999996555555433 4788888874 223444444344
Q ss_pred Ce-EEEEEcCCCCCEEEEEe---CCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCC--CeeeEEeCCCCCcEEEE
Q 015484 304 EV-FQVEWDPNHETVLASSA---DDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKA--KISDFSWNKNDPWVISS 377 (406)
Q Consensus 304 ~v-~~i~~~p~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~s~~~~~~l~s 377 (406)
.+ ..+... .+ .+++... ..+.|.-.++...... .....+..+.. .+..+... +.++++.
T Consensus 278 ~~~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~-----------~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~ 342 (414)
T PF02897_consen 278 GVEYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSPA-----------EWWTVLIPEDEDVSLEDVSLF--KDYLVLS 342 (414)
T ss_dssp S-EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSGG-----------GEEEEEE--SSSEEEEEEEEE--TTEEEEE
T ss_pred ceEEEEEcc-CC-EEEEeeCCCCCCcEEEEecccccccc-----------cceeEEcCCCCceeEEEEEEE--CCEEEEE
Confidence 44 334433 33 3444332 2456666676653210 01112223333 35555543 4457777
Q ss_pred EeCCCc--EEEEeCC
Q 015484 378 VADDNT--VQVWQMT 390 (406)
Q Consensus 378 ~~~dg~--i~iw~~~ 390 (406)
...++. |+++++.
T Consensus 343 ~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 343 YRENGSSRLRVYDLD 357 (414)
T ss_dssp EEETTEEEEEEEETT
T ss_pred EEECCccEEEEEECC
Confidence 776664 7888888
No 384
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.43 E-value=0.73 Score=42.27 Aligned_cols=199 Identities=13% Similarity=0.126 Sum_probs=88.0
Q ss_pred CCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC---CC----CCeeEEEecCCCCCeEEEec--C----CCeEEE
Q 015484 127 KPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG---HD----KEGYGLSWSPFKEGYLVSGS--H----DNKICL 193 (406)
Q Consensus 127 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~---h~----~~v~~l~~~~~~~~~l~s~~--~----dg~i~i 193 (406)
.+.+++-|-.++.|+|+|+.+....+. ..+.+.. +. ..-..+---|+|+ .++++- . -|-+.+
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~----l~KvIe~~ev~~k~g~s~PHT~Hclp~G~-imIS~lGd~~G~g~Ggf~l 161 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPR----LHKVIEPEEVFEKTGLSRPHTVHCLPDGR-IMISALGDADGNGPGGFVL 161 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-E----EEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEE
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCc----eEeeeCHHHHHhhcCCCCCceeeecCCcc-EEEEeccCCCCCCCCcEEE
Confidence 434555666888999999986433221 1111111 00 0111222335565 666642 1 245666
Q ss_pred EeCCCccCCceeeeeeeeec---cCccEEEEEeeCCCCCEEEEEe--------------------cCCcEEEEECCCCcc
Q 015484 194 WDVSALAQDKVIDAMHVYEA---HESVVEDVSWHLKNENLFGSAG--------------------DDCQLMIWDLRTNQT 250 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~---~~~~i~~i~~~p~~~~~l~~~~--------------------~dg~i~i~d~~~~~~ 250 (406)
.|-++... ...... ...--.++-|.| ..+.+++.. ...++.+||+.+.+.
T Consensus 162 lD~~tf~v------~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~ 234 (461)
T PF05694_consen 162 LDGETFEV------KGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKL 234 (461)
T ss_dssp E-TTT--E------EEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEE
T ss_pred EcCccccc------cceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcE
Confidence 66554321 111111 122345666777 455555543 245799999999999
Q ss_pred cccccccCC--CeeEEEe--cCCCCcEEEEEeCCCcEEEEeC-CCCC---CCcEEec-----------------CCCCCe
Q 015484 251 QQRVKAHEK--EVNYLSF--NPYNEWVLATASSDTTVALFDM-RKMT---VPLHILS-----------------SHTEEV 305 (406)
Q Consensus 251 ~~~~~~~~~--~v~~i~~--~~~~~~~l~~~~~dg~i~vwd~-~~~~---~~~~~~~-----------------~h~~~v 305 (406)
++++..... ....|.| .|....-++.+.-.++|..|-- ..+. +.+..+. .-..-|
T Consensus 235 ~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Li 314 (461)
T PF05694_consen 235 LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLI 314 (461)
T ss_dssp EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE----
T ss_pred eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCce
Confidence 988854332 2334544 5666644555545555555533 2211 0011111 113458
Q ss_pred EEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCc
Q 015484 306 FQVEWDPNHETVLASSADDRRLMVWDLNRIGD 337 (406)
Q Consensus 306 ~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 337 (406)
+.|..|.+.++|.+++=.+|.|+.||+.....
T Consensus 315 tDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 315 TDILISLDDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp --EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred EeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence 99999999998777888899999999987543
No 385
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.42 E-value=0.78 Score=42.44 Aligned_cols=95 Identities=12% Similarity=0.102 Sum_probs=58.8
Q ss_pred EEEecCCCCCeEEEecCCCeEEE---EeCCCcc-CCcee--eeeeeeecc-CccEEEEEeeCC----------CCCEEEE
Q 015484 171 GLSWSPFKEGYLVSGSHDNKICL---WDVSALA-QDKVI--DAMHVYEAH-ESVVEDVSWHLK----------NENLFGS 233 (406)
Q Consensus 171 ~l~~~~~~~~~l~s~~~dg~i~i---wd~~~~~-~~~~~--~~~~~~~~~-~~~i~~i~~~p~----------~~~~l~~ 233 (406)
.++.+|+++ .|+.|..+..+.+ |+..... ..... .....+... ...|+++.|-|- +...+++
T Consensus 6 ~isls~~~d-~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~V 84 (415)
T PF14655_consen 6 SISLSPDGD-LLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAV 84 (415)
T ss_pred eEEecCCCC-EEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEE
Confidence 467788888 8888876665554 5442221 11111 111112111 146777776553 3577899
Q ss_pred EecCCcEEEEECCCCcccccccccCCCeeEEEec
Q 015484 234 AGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFN 267 (406)
Q Consensus 234 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~ 267 (406)
|..+|.|++|.. +|..+..-.-|..+|..+...
T Consensus 85 G~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 85 GTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred EecccEEEEEec-cchHHHHHhcCccceEEEEec
Confidence 999999999986 566665555678888888764
No 386
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.39 E-value=0.015 Score=35.09 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=29.0
Q ss_pred CCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 359 KAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 359 ~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
...|..++|+|... ++|.+..+|.|.+++++-+
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEECCCc
Confidence 45699999999999 8999999999999999543
No 387
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.38 E-value=0.62 Score=40.85 Aligned_cols=147 Identities=14% Similarity=0.131 Sum_probs=85.3
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeee
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAM 208 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 208 (406)
+.|+.|+.+| +++++.... ..+.... +...|..+...+.-+ .|++-+ |+.+.++++............
T Consensus 8 ~~L~vGt~~G-l~~~~~~~~-------~~~~~i~--~~~~I~ql~vl~~~~-~llvLs-d~~l~~~~L~~l~~~~~~~~~ 75 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSDP-------SKPTRIL--KLSSITQLSVLPELN-LLLVLS-DGQLYVYDLDSLEPVSTSAPL 75 (275)
T ss_pred CEEEEEECCC-EEEEEecCC-------ccceeEe--ecceEEEEEEecccC-EEEEEc-CCccEEEEchhhccccccccc
Confidence 5788899999 999999331 1112222 233399999998766 555554 599999998875432211000
Q ss_pred e--------eeeccCccEEEEE-eeCCCCCEEEEEecCCcEEEEECCCC-----cccccccccCCCeeEEEecCCCCcEE
Q 015484 209 H--------VYEAHESVVEDVS-WHLKNENLFGSAGDDCQLMIWDLRTN-----QTQQRVKAHEKEVNYLSFNPYNEWVL 274 (406)
Q Consensus 209 ~--------~~~~~~~~i~~i~-~~p~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~~l 274 (406)
. ........+...+ -....+...+++.....|.+|..... +..+.+. -...+.+++|. ++ .+
T Consensus 76 ~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~-~i 151 (275)
T PF00780_consen 76 AFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GN-KI 151 (275)
T ss_pred cccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CC-EE
Confidence 0 0011122344433 11223333344555568888887653 2334443 34778899998 33 67
Q ss_pred EEEeCCCcEEEEeCCCCC
Q 015484 275 ATASSDTTVALFDMRKMT 292 (406)
Q Consensus 275 ~~~~~dg~i~vwd~~~~~ 292 (406)
+.|..+ ...+.|+.+..
T Consensus 152 ~v~~~~-~f~~idl~~~~ 168 (275)
T PF00780_consen 152 CVGTSK-GFYLIDLNTGS 168 (275)
T ss_pred EEEeCC-ceEEEecCCCC
Confidence 777655 58889998644
No 388
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.36 E-value=0.25 Score=45.19 Aligned_cols=207 Identities=16% Similarity=0.194 Sum_probs=92.1
Q ss_pred eEEEec-CCCeEEEEeCCCccCCceeeeeeeeec---c----CccEEEEEeeCCCCCEEEEEe------cCCcEEEEECC
Q 015484 181 YLVSGS-HDNKICLWDVSALAQDKVIDAMHVYEA---H----ESVVEDVSWHLKNENLFGSAG------DDCQLMIWDLR 246 (406)
Q Consensus 181 ~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~---~----~~~i~~i~~~p~~~~~l~~~~------~dg~i~i~d~~ 246 (406)
+|+..+ ..+.|.|.|+.+......+. +.+.. + -+....+..-| ++.+++++- .-|.+.++|-+
T Consensus 89 ~Li~PgL~SsrIyviD~~~dPr~P~l~--KvIe~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 89 YLILPGLRSSRIYVIDTKTDPRKPRLH--KVIEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp EEEEEBTTT--EEEEE--S-TTS-EEE--EEE-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cEEeeeeccCcEEEEECCCCCCCCceE--eeeCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcCc
Confidence 565555 77899999998644333221 11111 1 01222333345 566776652 23457788877
Q ss_pred CCcccccccc---cCCCeeEEEecCCCCcEEEEEe--------------------CCCcEEEEeCCCCCCCcEEecCCCC
Q 015484 247 TNQTQQRVKA---HEKEVNYLSFNPYNEWVLATAS--------------------SDTTVALFDMRKMTVPLHILSSHTE 303 (406)
Q Consensus 247 ~~~~~~~~~~---~~~~v~~i~~~~~~~~~l~~~~--------------------~dg~i~vwd~~~~~~~~~~~~~h~~ 303 (406)
+.+....... ....-..+-|.|..+ .+++.. ...++.+||+...+. ++++.....
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~-~Q~idLg~~ 243 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKL-LQTIDLGEE 243 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEE-EEEEES-TT
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcE-eeEEecCCC
Confidence 6665544432 223345677888666 666643 235899999998554 666655432
Q ss_pred --CeEEEEE--cCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCe---------eEEEecCCCCCeeeEEeCCC
Q 015484 304 --EVFQVEW--DPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPE---------LLFSHGGHKAKISDFSWNKN 370 (406)
Q Consensus 304 --~v~~i~~--~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---------~~~~~~~h~~~v~~~~~s~~ 370 (406)
.+..|.| .|+..+=++.+...++|..|--...+. ......-+.+.. ++..+..-..-|+++..|.+
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~-W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlD 322 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGE-WAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLD 322 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTE-EEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TT
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCC-eeeeEEEECCCcccCcccccccccccccCCCceEeEEEccC
Confidence 3556666 455554455555566665554322221 110000000000 00000001235899999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCcc
Q 015484 371 DPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 371 ~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
.+++.+++=.+|.|+.||+++..
T Consensus 323 DrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 323 DRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp S-EEEEEETTTTEEEEEE-SSTT
T ss_pred CCEEEEEcccCCcEEEEecCCCC
Confidence 99988888899999999998753
No 389
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=0.084 Score=53.27 Aligned_cols=146 Identities=10% Similarity=0.115 Sum_probs=89.6
Q ss_pred cEEEEEeeCCCCCEEEE--EecCCcEEEEECCCCcccc-----cc------cccCCCeeEEEecCCCCcEEEEEeCCCcE
Q 015484 217 VVEDVSWHLKNENLFGS--AGDDCQLMIWDLRTNQTQQ-----RV------KAHEKEVNYLSFNPYNEWVLATASSDTTV 283 (406)
Q Consensus 217 ~i~~i~~~p~~~~~l~~--~~~dg~i~i~d~~~~~~~~-----~~------~~~~~~v~~i~~~~~~~~~l~~~~~dg~i 283 (406)
++..+...+ +....++ .+++-.|..||++.-..-. .+ ........++.|+|.-....++...|+.|
T Consensus 102 pi~~~v~~~-D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFH-DATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEecc-CCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 455555555 3444333 3344478899998643211 11 11223456788999877667888889999
Q ss_pred EEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCee
Q 015484 284 ALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKIS 363 (406)
Q Consensus 284 ~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 363 (406)
++.-+......+..+. -...+++++|+|.|.+ ++.|-..|++.-|...-..... ..+++. .....|.
T Consensus 181 ~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQ-l~iG~nnGt~vQy~P~leik~~-----ip~Pp~------~e~yrvl 247 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQ-LFIGRNNGTEVQYEPSLEIKSE-----IPEPPV------EENYRVL 247 (1405)
T ss_pred hhhhhhhhhhhhcccC-cccceeeEEeccccce-eeEecCCCeEEEeecccceeec-----ccCCCc------CCCccee
Confidence 9987765444333332 3567899999999986 8899999999888765311100 001110 0145689
Q ss_pred eEEeCCCCCcEEE
Q 015484 364 DFSWNKNDPWVIS 376 (406)
Q Consensus 364 ~~~~s~~~~~~l~ 376 (406)
+|+|-....++++
T Consensus 248 ~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 248 SVTWLSTQEFLVV 260 (1405)
T ss_pred EEEEecceeEEEE
Confidence 9999877764433
No 390
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.28 E-value=0.4 Score=41.29 Aligned_cols=174 Identities=10% Similarity=0.159 Sum_probs=103.1
Q ss_pred ccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccccc-CCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCC
Q 015484 213 AHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAH-EKEVNYLSFNPYNEWVLATASSDTTVALFDMRKM 291 (406)
Q Consensus 213 ~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~ 291 (406)
+-...+.++.|+|+...+| +..+...-.++=...|+.+.++... -...-.|.+...+. +.++--.++.+.++.+...
T Consensus 83 g~~~nvS~LTynp~~rtLF-av~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 83 GETANVSSLTYNPDTRTLF-AVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccceeeCCCcceEE-EecCCCceEEEEecCCceEEEecccccCChhHeEEecCCE-EEEEehhcceEEEEEEcCC
Confidence 3445699999999655555 5555555556655668877776321 23344577776666 5666666778887766543
Q ss_pred CC---------CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCe
Q 015484 292 TV---------PLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKI 362 (406)
Q Consensus 292 ~~---------~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 362 (406)
.. ++..........-.++|.|.... |..+-+-.-+.||.+............ ..+ ..... -....|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~-l~~aKEr~P~~I~~~~~~~~~l~~~~~-~~~-~~~~~--~f~~Dv 235 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHR-LFVAKERNPIGIFEVTQSPSSLSVHAS-LDP-TADRD--LFVLDV 235 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCce-EEEEEccCCcEEEEEecCCcccccccc-cCc-ccccc--eEeecc
Confidence 21 11112222456788999999875 667777778888887642211111000 000 00000 012347
Q ss_pred eeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 363 SDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 363 ~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
.++.|++....+++-+.+++.+.--+...+.
T Consensus 236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~ 266 (316)
T COG3204 236 SGLEFNAITNSLLVLSDESRRLLEVDLSGEV 266 (316)
T ss_pred ccceecCCCCcEEEEecCCceEEEEecCCCe
Confidence 7888887665577777778877777766653
No 391
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.22 E-value=0.71 Score=39.94 Aligned_cols=167 Identities=12% Similarity=0.065 Sum_probs=90.2
Q ss_pred cEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEe-CCCCCCCc
Q 015484 217 VVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFD-MRKMTVPL 295 (406)
Q Consensus 217 ~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd-~~~~~~~~ 295 (406)
.+.+.++++++..+.+....++.-.+|-...+....... ....+..-+|++++. +.+....+...+++. ........
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGW-VWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCC-EEEEEcCCCceEEEEecCCCccee
Confidence 678889998544444444233333444444443333332 234778889999976 666656566666663 23322212
Q ss_pred EEecCC-C-CCeEEEEEcCCCCCEEEEE--eCCCcEEEEeCCCCCcc-cccccccCCCCeeEEEecCCCCCeeeEEeCCC
Q 015484 296 HILSSH-T-EEVFQVEWDPNHETVLASS--ADDRRLMVWDLNRIGDE-QLELDAEDGPPELLFSHGGHKAKISDFSWNKN 370 (406)
Q Consensus 296 ~~~~~h-~-~~v~~i~~~p~~~~~l~s~--~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 370 (406)
...... . ..|..+.++|+|..+.+.. ..++.|.+=-+.....- .... .............+.++.|.++
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l------~~~~~~~~~~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRL------TGPRRVAPPLLSDVTDVAWSDD 176 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCccee------ccceEecccccCcceeeeecCC
Confidence 222221 1 2899999999998755444 23577777665542221 0000 0111222233457999999999
Q ss_pred CCcEEEEEeCCCcEEE-EeCCC
Q 015484 371 DPWVISSVADDNTVQV-WQMTD 391 (406)
Q Consensus 371 ~~~~l~s~~~dg~i~i-w~~~~ 391 (406)
+..++++...++.+.. ..+..
T Consensus 177 ~~L~V~~~~~~~~~~~~v~~dG 198 (253)
T PF10647_consen 177 STLVVLGRSAGGPVVRLVSVDG 198 (253)
T ss_pred CEEEEEeCCCCCceeEEEEccC
Confidence 9844444444554444 44433
No 392
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.21 E-value=0.85 Score=44.61 Aligned_cols=185 Identities=13% Similarity=0.057 Sum_probs=94.4
Q ss_pred CceeEEEEcCCCCcEEEEEe-----CCC--eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 116 GEVNRARCMPQKPNLVGTKT-----SSC--EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~-----~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
..+...+.+|++..+.++.. .|. .+.+++.... ..+ ...+ ...+.-.|+|+|. .|++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-------~~~--lt~g--~~~t~PsWspDG~-~lw~v~dg 417 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-------AVQ--VLEG--HSLTRPSWSLDAD-AVWVVVDG 417 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-------cee--eecC--CCCCCceECCCCC-ceEEEecC
Confidence 35778889999965544442 233 4555554321 111 1222 2377889999977 66666432
Q ss_pred ------------CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEE---EECCCCcc-c-
Q 015484 189 ------------NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMI---WDLRTNQT-Q- 251 (406)
Q Consensus 189 ------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i---~d~~~~~~-~- 251 (406)
+.+.+.+++.+.. .. .....|..+.|+|++ ..++... +|.|.+ -....+.. +
T Consensus 418 ~~~~~v~~~~~~gql~~~~vd~ge~-------~~--~~~g~Issl~wSpDG-~RiA~i~-~g~v~Va~Vvr~~~G~~~l~ 486 (591)
T PRK13616 418 NTVVRVIRDPATGQLARTPVDASAV-------AS--RVPGPISELQLSRDG-VRAAMII-GGKVYLAVVEQTEDGQYALT 486 (591)
T ss_pred cceEEEeccCCCceEEEEeccCchh-------hh--ccCCCcCeEEECCCC-CEEEEEE-CCEEEEEEEEeCCCCceeec
Confidence 2222223322111 00 234579999999954 4444433 477776 34333431 1
Q ss_pred --ccc-cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC--CCCCeEEEEEcCCCCCEEEEEeCCCc
Q 015484 252 --QRV-KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS--HTEEVFQVEWDPNHETVLASSADDRR 326 (406)
Q Consensus 252 --~~~-~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--h~~~v~~i~~~p~~~~~l~s~~~dg~ 326 (406)
..+ ......+.++.|..++. + +++..++.-.+|.+.-.......+.. ...++..|+=++. . ++....+|.
T Consensus 487 ~~~~l~~~l~~~~~~l~W~~~~~-L-~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~-iyv~~~~g~ 561 (591)
T PRK13616 487 NPREVGPGLGDTAVSLDWRTGDS-L-VVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--T-VYVTDARAV 561 (591)
T ss_pred ccEEeecccCCccccceEecCCE-E-EEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--e-EEEEcCCce
Confidence 112 12233468899999887 4 45555554444543322211111122 2456777776653 2 444555664
Q ss_pred EE
Q 015484 327 LM 328 (406)
Q Consensus 327 i~ 328 (406)
+.
T Consensus 562 ~~ 563 (591)
T PRK13616 562 LQ 563 (591)
T ss_pred EE
Confidence 33
No 393
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.04 E-value=0.42 Score=39.68 Aligned_cols=100 Identities=14% Similarity=0.175 Sum_probs=66.6
Q ss_pred eeEEEecCCCCCeEEEecCCCeEEEEe--CCCccCCce--eeeeeeeeccCcc-EEEEEeeCCCCCEEEEEecCCcEEEE
Q 015484 169 GYGLSWSPFKEGYLVSGSHDNKICLWD--VSALAQDKV--IDAMHVYEAHESV-VEDVSWHLKNENLFGSAGDDCQLMIW 243 (406)
Q Consensus 169 v~~l~~~~~~~~~l~s~~~dg~i~iwd--~~~~~~~~~--~~~~~~~~~~~~~-i~~i~~~p~~~~~l~~~~~dg~i~i~ 243 (406)
-++++|+.+.+.+.++-+.+-+|.-|| ..++..... +-.+...+..... .-.++... .+++++++-+.|+|...
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKV 238 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEE
Confidence 357899977765666777788888888 555433211 1011111111111 12233343 68888899999999999
Q ss_pred ECCCCcccccccccCCCeeEEEecCC
Q 015484 244 DLRTNQTQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 244 d~~~~~~~~~~~~~~~~v~~i~~~~~ 269 (406)
|..+++.+..++-....++|++|--.
T Consensus 239 dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 239 DPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CCCCCcEEEEEEcCCCceEEEEecCC
Confidence 99999999999888999999999643
No 394
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.03 E-value=1.5 Score=42.06 Aligned_cols=151 Identities=11% Similarity=0.096 Sum_probs=79.7
Q ss_pred eEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccE-EEEEeeCCCCCEEEEEe---------cCCcEEEEECCCCcc
Q 015484 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVV-EDVSWHLKNENLFGSAG---------DDCQLMIWDLRTNQT 250 (406)
Q Consensus 181 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i-~~i~~~p~~~~~l~~~~---------~dg~i~i~d~~~~~~ 250 (406)
.++.++.+|.|.-+|.++++............ ....+ ....+. + .+++.++ .+|.+..+|..+++.
T Consensus 112 ~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~-~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 112 KVFFGTFDGRLVALDAETGKQVWKFGNNDQVP-PGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred eEEEecCCCeEEEEECCCCCEeeeecCCCCcC-cceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 78888899999999999886543221110000 00001 111222 2 3343443 368899999999987
Q ss_pred cccccccCC--------------------Ce-eEEEecCCCCcEEEEEeCCC------------------cEEEEeCCCC
Q 015484 251 QQRVKAHEK--------------------EV-NYLSFNPYNEWVLATASSDT------------------TVALFDMRKM 291 (406)
Q Consensus 251 ~~~~~~~~~--------------------~v-~~i~~~~~~~~~l~~~~~dg------------------~i~vwd~~~~ 291 (406)
+-.+..... .+ .+.++.+.+. +++.++.++ .|.-+|..++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG 266 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG 266 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCC
Confidence 665532111 00 1234444455 677776554 6888888887
Q ss_pred CCCcEEec--CCC--------CC-eEEEE-EcCCCCCEEEEEeCCCcEEEEeCCCCCc
Q 015484 292 TVPLHILS--SHT--------EE-VFQVE-WDPNHETVLASSADDRRLMVWDLNRIGD 337 (406)
Q Consensus 292 ~~~~~~~~--~h~--------~~-v~~i~-~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 337 (406)
+. +-.+. .|. .+ +..+. ..-....+++.++.+|.+...|..+...
T Consensus 267 ~~-~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~ 323 (488)
T cd00216 267 KV-KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL 323 (488)
T ss_pred CE-EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE
Confidence 65 22221 111 11 11111 1111112567777888888888877543
No 395
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.96 E-value=1 Score=39.47 Aligned_cols=149 Identities=15% Similarity=0.137 Sum_probs=85.0
Q ss_pred CCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEE---------
Q 015484 227 NENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHI--------- 297 (406)
Q Consensus 227 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--------- 297 (406)
.++.++.|+++| +.++++........+. ....|..+...|.-+ .|++-+ |+.++++++.........
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~-~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELN-LLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccC-EEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 467777888888 9999983332222222 233499999998777 444443 599999999875542211
Q ss_pred ----ecCCCCCeEEEE--EcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCC
Q 015484 298 ----LSSHTEEVFQVE--WDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKND 371 (406)
Q Consensus 298 ----~~~h~~~v~~i~--~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~ 371 (406)
.......+..++ -.+.+...|+ .....+|.+|.......... .....+. -...+.+++|.++
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~-va~kk~i~i~~~~~~~~~f~---------~~~ke~~-lp~~~~~i~~~~~- 149 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLC-VAVKKKILIYEWNDPRNSFS---------KLLKEIS-LPDPPSSIAFLGN- 149 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEE-EEECCEEEEEEEECCccccc---------ceeEEEE-cCCCcEEEEEeCC-
Confidence 111223344444 1223333344 44455899998876211100 1222222 2357889999844
Q ss_pred CcEEEEEeCCCcEEEEeCCCccc
Q 015484 372 PWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 372 ~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.++.|.. +...+.|+.++..
T Consensus 150 --~i~v~~~-~~f~~idl~~~~~ 169 (275)
T PF00780_consen 150 --KICVGTS-KGFYLIDLNTGSP 169 (275)
T ss_pred --EEEEEeC-CceEEEecCCCCc
Confidence 4555554 4478888886644
No 396
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.85 E-value=0.32 Score=47.44 Aligned_cols=188 Identities=12% Similarity=0.059 Sum_probs=95.2
Q ss_pred CCceeEEEEcCCCCcEEEEEeCC------CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSS------CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
...-.+++... + .+.++|+.+ .++..||.... .+.....+....... +++.. .|. +.+.|+.|
T Consensus 322 ~r~~~~~~~~~-~-~lYv~GG~~~~~~~l~~ve~YD~~~~------~W~~~a~M~~~R~~~-~v~~l-~g~-iYavGG~d 390 (571)
T KOG4441|consen 322 PRCRVGVAVLN-G-KLYVVGGYDSGSDRLSSVERYDPRTN------QWTPVAPMNTKRSDF-GVAVL-DGK-LYAVGGFD 390 (571)
T ss_pred ccccccEEEEC-C-EEEEEccccCCCcccceEEEecCCCC------ceeccCCccCccccc-eeEEE-CCE-EEEEeccc
Confidence 33344445444 3 578888888 35777887763 343333333222222 22221 244 78888888
Q ss_pred Ce-----EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC------cEEEEECCCCccc--cccc
Q 015484 189 NK-----ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC------QLMIWDLRTNQTQ--QRVK 255 (406)
Q Consensus 189 g~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg------~i~i~d~~~~~~~--~~~~ 255 (406)
|. +-.||..+.+-. ..............+.+ ++.+.++||.++ ++..||..+++.. ..+.
T Consensus 391 g~~~l~svE~YDp~~~~W~----~va~m~~~r~~~gv~~~---~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~ 463 (571)
T KOG4441|consen 391 GEKSLNSVECYDPVTNKWT----PVAPMLTRRSGHGVAVL---GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN 463 (571)
T ss_pred cccccccEEEecCCCCccc----ccCCCCcceeeeEEEEE---CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcc
Confidence 64 667777664321 11111111111222222 588888888554 4678888876542 2222
Q ss_pred ccCCCeeEEEecCCCCcEEEEEeCCC-----cEEEEeCCCCCCC-cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCc
Q 015484 256 AHEKEVNYLSFNPYNEWVLATASSDT-----TVALFDMRKMTVP-LHILSSHTEEVFQVEWDPNHETVLASSADDRR 326 (406)
Q Consensus 256 ~~~~~v~~i~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~-~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~ 326 (406)
..........+ ++. +.+.|+.|+ +|..||.++..-. +..+......+..+. .+..+.+.|+.||.
T Consensus 464 ~~R~~~g~a~~--~~~-iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~---~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 464 TRRSGFGVAVL--NGK-IYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVV---LGGKLYAVGGFDGN 534 (571)
T ss_pred cccccceEEEE--CCE-EEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEE---ECCEEEEEecccCc
Confidence 22222222222 244 888888776 3777888764421 111222222222222 23346778887754
No 397
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.65 E-value=0.34 Score=47.03 Aligned_cols=122 Identities=14% Similarity=0.236 Sum_probs=68.2
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEc--CCCCCEEEEEeCCCcEEEEeCCCCCcc
Q 015484 261 VNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWD--PNHETVLASSADDRRLMVWDLNRIGDE 338 (406)
Q Consensus 261 v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~--p~~~~~l~s~~~dg~i~iwd~~~~~~~ 338 (406)
..-+.-+..+. ..++-+....+.|||.+.............+.|.++.|. |+++. +++.|-...|.+|--......
T Consensus 32 ~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qs-iLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 32 PSLISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQS-ILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred cceEeecccCc-EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCE-EEEEEcCcEEEEEEccchhhh
Confidence 33444444454 333333344899999987653222222457789999984 67765 666667888888864321111
Q ss_pred cccccccCCCCeeEEEecCCC-CCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 339 QLELDAEDGPPELLFSHGGHK-AKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
..... -. +........|+ .+|.+..|.++|. +++.+ ++.+.|++-.
T Consensus 110 ~~~p~--w~-~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 110 NKGPS--WA-PIRKIDISSHTPHPIGDSIWLKDGT-LVVGS--GNQLFVFDKW 156 (631)
T ss_pred cCCcc--cc-eeEEEEeecCCCCCccceeEecCCe-EEEEe--CCEEEEECCC
Confidence 10000 00 11111123333 5799999999997 44433 4578888643
No 398
>PHA03098 kelch-like protein; Provisional
Probab=95.63 E-value=0.6 Score=45.45 Aligned_cols=152 Identities=11% Similarity=0.036 Sum_probs=71.8
Q ss_pred CCCEEEEEecC-----CcEEEEECCCCcccc--cccccCCCeeEEEecCCCCcEEEEEeCC------CcEEEEeCCCCCC
Q 015484 227 NENLFGSAGDD-----CQLMIWDLRTNQTQQ--RVKAHEKEVNYLSFNPYNEWVLATASSD------TTVALFDMRKMTV 293 (406)
Q Consensus 227 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~ 293 (406)
++.+++.||.+ ..+..||..+.+-.. .+....... +++. -++. +++.|+.+ ..+..||+.+..-
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~~-~~~~-iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVVN-VNNL-IYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEEE-ECCE-EEEECCcCCCCcccceEEEEeCCCCee
Confidence 57788888865 346778887654321 111111111 1222 2344 67777632 3578899875431
Q ss_pred -CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC--------cEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeee
Q 015484 294 -PLHILSSHTEEVFQVEWDPNHETVLASSADDR--------RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISD 364 (406)
Q Consensus 294 -~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 364 (406)
.+..+....... ++.. .++ .+++.|+.++ .+.+||..+..-.... .......+| ..
T Consensus 419 ~~~~~~p~~r~~~-~~~~-~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~--------~~~~~r~~~----~~ 483 (534)
T PHA03098 419 SKGSPLPISHYGG-CAIY-HDG-KIYVIGGISYIDNIKVYNIVESYNPVTNKWTELS--------SLNFPRINA----SL 483 (534)
T ss_pred eecCCCCccccCc-eEEE-ECC-EEEEECCccCCCCCcccceEEEecCCCCceeeCC--------CCCcccccc----eE
Confidence 011111111111 1222 233 3666666432 3777887652211100 000000111 11
Q ss_pred EEeCCCCCcEEEEEeCC-----CcEEEEeCCCcccCCCcc
Q 015484 365 FSWNKNDPWVISSVADD-----NTVQVWQMTDSIYRDDDD 399 (406)
Q Consensus 365 ~~~s~~~~~~l~s~~~d-----g~i~iw~~~~~~~~~~~~ 399 (406)
+.+ ++. +++.||.+ +.|.+||+.++.+.....
T Consensus 484 ~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 484 CIF--NNK-IYVVGGDKYEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred EEE--CCE-EEEEcCCcCCcccceeEEEeCCCCEEEecCC
Confidence 222 455 67777654 478999999987765443
No 399
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.62 E-value=2 Score=41.26 Aligned_cols=108 Identities=9% Similarity=0.030 Sum_probs=60.8
Q ss_pred eEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccE--EEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccC
Q 015484 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVV--EDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHE 258 (406)
Q Consensus 181 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i--~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 258 (406)
.++.++.++.|.-.|..+++.................+ ..+... ++..++.++.+|.|+.+|.++++.+-.+....
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~--~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW--DPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc--cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 67777788999999998876543322111000000001 011111 22566678889999999999999876654322
Q ss_pred CC-----e-eEEEecCCCCcEEEEEe---------CCCcEEEEeCCCCCC
Q 015484 259 KE-----V-NYLSFNPYNEWVLATAS---------SDTTVALFDMRKMTV 293 (406)
Q Consensus 259 ~~-----v-~~i~~~~~~~~~l~~~~---------~dg~i~vwd~~~~~~ 293 (406)
.. + .+..+. +. +++.++ .+|.+..+|..+++.
T Consensus 141 ~~~~~~~i~ssP~v~--~~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 141 QVPPGYTMTGAPTIV--KK-LVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CcCcceEecCCCEEE--CC-EEEEeccccccccCCCCcEEEEEECCCCce
Confidence 10 1 111222 23 455554 357788889888764
No 400
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.54 E-value=0.39 Score=42.63 Aligned_cols=157 Identities=10% Similarity=0.109 Sum_probs=87.2
Q ss_pred cCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEE-EEEeeCCCCCEEEEEecCCcEEEEECCCCccc--
Q 015484 175 SPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE-DVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ-- 251 (406)
Q Consensus 175 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~-~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~-- 251 (406)
-|.++..+.+-+.||++.-..+....... .+....|.....++. .-++.. .+..++-.+.+|.|+-.|+......
T Consensus 143 yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~-~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~ 220 (342)
T PF06433_consen 143 YPSGNRGFSMLCGDGSLLTVTLDADGKEA-QKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFG 220 (342)
T ss_dssp EEEETTEEEEEETTSCEEEEEETSTSSEE-EEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEE
T ss_pred EecCCCceEEEecCCceEEEEECCCCCEe-EeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCccccc
Confidence 34454468888899999999998544322 111122222222222 223333 3344444788898888887655421
Q ss_pred ccccc----------cCCCeeEEEecCCCCcEEEEEe-------CCC--cEEEEeCCCCCCCcEEecCCCCCeEEEEEcC
Q 015484 252 QRVKA----------HEKEVNYLSFNPYNEWVLATAS-------SDT--TVALFDMRKMTVPLHILSSHTEEVFQVEWDP 312 (406)
Q Consensus 252 ~~~~~----------~~~~v~~i~~~~~~~~~l~~~~-------~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p 312 (406)
..+.. ..+.-.-+++++....+++.-. .|+ .|-++|+.+.+. +..+.. ..++.+|..+.
T Consensus 221 ~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr-v~Ri~l-~~~~~Si~Vsq 298 (342)
T PF06433_consen 221 KPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR-VARIPL-EHPIDSIAVSQ 298 (342)
T ss_dssp EEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEE-EEEEEE-EEEESEEEEES
T ss_pred CcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeE-EEEEeC-CCccceEEEcc
Confidence 11100 0122334677765542333221 122 577888888665 555553 34577999999
Q ss_pred CCCCEEEEE-eCCCcEEEEeCCCC
Q 015484 313 NHETVLASS-ADDRRLMVWDLNRI 335 (406)
Q Consensus 313 ~~~~~l~s~-~~dg~i~iwd~~~~ 335 (406)
+.+-+|++. ..++.+.+||..++
T Consensus 299 d~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 299 DDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp SSS-EEEEEETTTTEEEEEETTT-
T ss_pred CCCcEEEEEcCCCCeEEEEeCcCC
Confidence 887667655 45899999999983
No 401
>PHA03098 kelch-like protein; Provisional
Probab=95.51 E-value=1.3 Score=43.18 Aligned_cols=184 Identities=11% Similarity=0.020 Sum_probs=82.7
Q ss_pred cEEEEEeCCC------eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC-----CeEEEEeCC
Q 015484 129 NLVGTKTSSC------EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD-----NKICLWDVS 197 (406)
Q Consensus 129 ~~l~~~~~dg------~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-----g~i~iwd~~ 197 (406)
.+++.|+.++ .+..||..+..- .....+.........+.+ ++. .++.|+.+ ..+..||..
T Consensus 296 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W------~~~~~~~~~R~~~~~~~~--~~~-lyv~GG~~~~~~~~~v~~yd~~ 366 (534)
T PHA03098 296 VIYFIGGMNKNNLSVNSVVSYDTKTKSW------NKVPELIYPRKNPGVTVF--NNR-IYVIGGIYNSISLNTVESWKPG 366 (534)
T ss_pred EEEEECCCcCCCCeeccEEEEeCCCCee------eECCCCCcccccceEEEE--CCE-EEEEeCCCCCEecceEEEEcCC
Confidence 5666666542 467788766322 111111111111222222 244 77777765 346678876
Q ss_pred CccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC------CcEEEEECCCCcccc--cccccCCCeeEEEecCC
Q 015484 198 ALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD------CQLMIWDLRTNQTQQ--RVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d------g~i~i~d~~~~~~~~--~~~~~~~~v~~i~~~~~ 269 (406)
+..- ............ .+++.. ++.+++.||.+ ..+..||+.+.+-.. .+....... ++... +
T Consensus 367 ~~~W----~~~~~lp~~r~~-~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~~-~ 437 (534)
T PHA03098 367 ESKW----REEPPLIFPRYN-PCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIYH-D 437 (534)
T ss_pred CCce----eeCCCcCcCCcc-ceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEEE-C
Confidence 6432 111111111111 112222 56777777732 357889988754322 111111111 22222 3
Q ss_pred CCcEEEEEeCCC--------cEEEEeCCCCCC-CcEEecCCCCCeEEEEEcCCCCCEEEEEeCC-----CcEEEEeCCC
Q 015484 270 NEWVLATASSDT--------TVALFDMRKMTV-PLHILSSHTEEVFQVEWDPNHETVLASSADD-----RRLMVWDLNR 334 (406)
Q Consensus 270 ~~~~l~~~~~dg--------~i~vwd~~~~~~-~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d-----g~i~iwd~~~ 334 (406)
+. +++.|+.++ .+.+||..+..- .+..+.........+.+ ++ .+++.|+.+ +.+.+||..+
T Consensus 438 ~~-iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 438 GK-IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NN-KIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred CE-EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CC-EEEEEcCCcCCcccceeEEEeCCC
Confidence 44 667676432 388889876431 01111111111122222 34 366666654 3567777654
No 402
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.41 E-value=0.063 Score=31.42 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=27.5
Q ss_pred ccEEEEEeeCCCC--CEEEEEecCCcEEEEECCC
Q 015484 216 SVVEDVSWHLKNE--NLFGSAGDDCQLMIWDLRT 247 (406)
Q Consensus 216 ~~i~~i~~~p~~~--~~l~~~~~dg~i~i~d~~~ 247 (406)
++|.++.|+|... .+|+.+-.-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999998655 7999888999999999995
No 403
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.25 E-value=1.1 Score=43.56 Aligned_cols=113 Identities=19% Similarity=0.271 Sum_probs=67.6
Q ss_pred cEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccc-ccCCCeeEEEec--CCCCcEEEEEeCCCcEEEEeCC----
Q 015484 217 VVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK-AHEKEVNYLSFN--PYNEWVLATASSDTTVALFDMR---- 289 (406)
Q Consensus 217 ~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~i~~~--~~~~~~l~~~~~dg~i~vwd~~---- 289 (406)
.+.-+.-+. -++..++-+....+.|||.+.+....... ...+.|..+.|. |+++.+|++ +-.+.|.+|--.
T Consensus 31 ~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaV-Gf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAV-GFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEE-EcCcEEEEEEccchhh
Confidence 334444443 23444444455679999999877533322 347789999984 678845554 556778887432
Q ss_pred -CCC---CCcEE--ecCCC-CCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 290 -KMT---VPLHI--LSSHT-EEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 290 -~~~---~~~~~--~~~h~-~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
+.. .++.. +..|+ .+|.+..|.++|. |+.|+ ++.+.|+|-.-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~--LvV~s-GNqlfv~dk~~ 157 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT--LVVGS-GNQLFVFDKWL 157 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCe--EEEEe-CCEEEEECCCc
Confidence 111 12222 23344 5799999999994 44444 55788887543
No 404
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.18 E-value=0.79 Score=42.60 Aligned_cols=151 Identities=13% Similarity=0.175 Sum_probs=93.7
Q ss_pred EEEeeCCCCCEE-EEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCc------EEEEEeCCCcEEEEeCCCCC
Q 015484 220 DVSWHLKNENLF-GSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEW------VLATASSDTTVALFDMRKMT 292 (406)
Q Consensus 220 ~i~~~p~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~------~l~~~~~dg~i~vwd~~~~~ 292 (406)
.+-.+-++..++ ..|+....++-.|+..|+.+.....+..- -+.|.|.... .-++|-++..|.-.|.|-..
T Consensus 471 K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~g 548 (776)
T COG5167 471 KIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARG 548 (776)
T ss_pred hceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccC
Confidence 333443344444 45666778888999999988888766554 4778875321 13345566677777887654
Q ss_pred CCcEEecC----CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeC
Q 015484 293 VPLHILSS----HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWN 368 (406)
Q Consensus 293 ~~~~~~~~----h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 368 (406)
..+..... ......+..-...| ++|.++..|-|++||--.. .....+.+....|..+..+
T Consensus 549 NKi~v~esKdY~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~--------------rAKtalP~lG~aIk~idvt 612 (776)
T COG5167 549 NKIKVVESKDYKTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGK--------------RAKTALPGLGDAIKHIDVT 612 (776)
T ss_pred CceeeeeehhccccccccccccccCc--eEEEecCCCceeeehhhcc--------------hhhhcCcccccceeeeEee
Confidence 33332221 11223333333344 5999999999999996431 1112233455678899999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCC
Q 015484 369 KNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 369 ~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
.+|.++||+| ...+.+-|+.
T Consensus 613 a~Gk~ilaTC--k~yllL~d~~ 632 (776)
T COG5167 613 ANGKHILATC--KNYLLLTDVP 632 (776)
T ss_pred cCCcEEEEee--cceEEEEecc
Confidence 9999888776 3567776664
No 405
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.17 E-value=0.8 Score=41.92 Aligned_cols=144 Identities=11% Similarity=0.176 Sum_probs=93.3
Q ss_pred eEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCc
Q 015484 170 YGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ 249 (406)
Q Consensus 170 ~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 249 (406)
+.+-|...++ .|++. ..|.+.-|-+...+..-. +..-....++|.+|.|++ +++.+|+--.+..|.+++....+
T Consensus 26 ngvFfDDaNk-qlfav-rSggatgvvvkgpndDVp---iSfdm~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~ 99 (657)
T KOG2377|consen 26 NGVFFDDANK-QLFAV-RSGGATGVVVKGPNDDVP---ISFDMDDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDN 99 (657)
T ss_pred cceeeccCcc-eEEEE-ecCCeeEEEEeCCCCCCC---ceeeecCCCceeEEEecc-CcceEEEEecCceEEEEecCCCc
Confidence 3454544444 33333 445566676654432211 122223467999999999 78999999999999999974433
Q ss_pred ccc----cccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEe
Q 015484 250 TQQ----RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSA 322 (406)
Q Consensus 250 ~~~----~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~ 322 (406)
... +.+.....|....|....+ +|.-+..| +-+|-.......++..+.|+..|+=..|.++.+-.|++.+
T Consensus 100 ~~l~~~~~ck~k~~~IlGF~W~~s~e--~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 100 SQLEYTQECKTKNANILGFCWTSSTE--IAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred hhhHHHHHhccCcceeEEEEEecCee--EEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 322 2244455688999987654 56555544 7777766656557778888889999999998875444444
No 406
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.76 E-value=0.46 Score=46.66 Aligned_cols=126 Identities=10% Similarity=0.118 Sum_probs=80.4
Q ss_pred CCceeEEEEcCC-CCcEEEEEeCCCeEEEEeCCCccccc------------cCCCCCceeeeCCCCCeeEEEec--CCCC
Q 015484 115 DGEVNRARCMPQ-KPNLVGTKTSSCEVYVFDCAKQAEKQ------------QDDCDPDLRLKGHDKEGYGLSWS--PFKE 179 (406)
Q Consensus 115 ~~~v~~i~~~p~-~~~~l~~~~~dg~i~iw~~~~~~~~~------------~~~~~~~~~~~~h~~~v~~l~~~--~~~~ 179 (406)
+..|+.|....- +..+|+.|.+||.|.+|..+.-.... ....+|...+. -...+++++++ ...+
T Consensus 100 PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r 178 (717)
T PF08728_consen 100 PHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR 178 (717)
T ss_pred CceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce
Confidence 345777766552 33689999999999999764321000 01223444444 34578999998 5555
Q ss_pred CeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCC--CC---EEEEEecCCcEEEEEC
Q 015484 180 GYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKN--EN---LFGSAGDDCQLMIWDL 245 (406)
Q Consensus 180 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~--~~---~l~~~~~dg~i~i~d~ 245 (406)
+||++++...|.||-+........... -..+...|.+|+|-+.. +. .+++++-.|.+.+|++
T Consensus 179 -lIAVSsNs~~VTVFaf~l~~~r~~~~~---s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 -LIAVSSNSQEVTVFAFALVDERFYHVP---SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred -EEEEecCCceEEEEEEecccccccccc---ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 888888888888886654321111111 11256679999998643 22 6778899999999887
No 407
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.72 E-value=3.6 Score=38.21 Aligned_cols=34 Identities=18% Similarity=0.143 Sum_probs=27.6
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCC
Q 015484 302 TEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIG 336 (406)
Q Consensus 302 ~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 336 (406)
...+.+|+.+|.+. +.++...=|.|.++|+....
T Consensus 307 ~R~~~~i~~sP~~~-laA~tDslGRV~LiD~~~~~ 340 (415)
T PF14655_consen 307 KREGESICLSPSGR-LAAVTDSLGRVLLIDVARGI 340 (415)
T ss_pred CceEEEEEECCCCC-EEEEEcCCCcEEEEECCCCh
Confidence 34578899999986 67777778999999998744
No 408
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.70 E-value=3.7 Score=38.22 Aligned_cols=157 Identities=13% Similarity=0.122 Sum_probs=88.8
Q ss_pred CCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC----CCCeEEEecCCCeEEEEeCCCcc
Q 015484 125 PQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF----KEGYLVSGSHDNKICLWDVSALA 200 (406)
Q Consensus 125 p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~~~~l~s~~~dg~i~iwd~~~~~ 200 (406)
+++...|++|+..|.++||+........ .....-..-..+|..++.-+. ....||. =.-..+.+|.+....
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~----~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~ 108 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQP----EDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVD 108 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCC----ccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecC
Confidence 3455789999999999999996532211 112222234578888876431 2213433 345678888874322
Q ss_pred CC----ceeeeeeeeeccC--ccEEEEEeeCCC----CCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCC
Q 015484 201 QD----KVIDAMHVYEAHE--SVVEDVSWHLKN----ENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 201 ~~----~~~~~~~~~~~~~--~~i~~i~~~p~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~ 270 (406)
.. .... +.....|. .....++.-|.+ ..++++-+.||.+.+|+-+.-.....+.. ---.-.+.+.+..
T Consensus 109 g~~~~g~~~~-L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~t 186 (418)
T PF14727_consen 109 GTVEHGNQYQ-LELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRT 186 (418)
T ss_pred CCcccCcEEE-EEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecC
Confidence 11 1111 11122222 233344443322 47788889999999999665432222222 1112236777777
Q ss_pred CcEEEEEeCCCcEEEEeCC
Q 015484 271 EWVLATASSDTTVALFDMR 289 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~ 289 (406)
+ .|++++.+..+.-|...
T Consensus 187 D-sfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 187 D-SFVTASSSWTLECYKYQ 204 (418)
T ss_pred C-EEEEecCceeEEEecHH
Confidence 6 78888888888888653
No 409
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.66 E-value=0.13 Score=30.08 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=27.6
Q ss_pred CceeEEEEcCCCC--cEEEEEeCCCeEEEEeCCC
Q 015484 116 GEVNRARCMPQKP--NLVGTKTSSCEVYVFDCAK 147 (406)
Q Consensus 116 ~~v~~i~~~p~~~--~~l~~~~~dg~i~iw~~~~ 147 (406)
|.|.+++|+|... .+|+..-..|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 5789999998664 7898888889999999985
No 410
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.62 E-value=3.3 Score=37.43 Aligned_cols=249 Identities=14% Similarity=0.163 Sum_probs=114.8
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC--CCCeEEEecCC------
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF--KEGYLVSGSHD------ 188 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~d------ 188 (406)
..+.|+|.|++ .+++ +...|.|++++............. ............++++|+ ..++|......
T Consensus 3 ~P~~~a~~pdG-~l~v-~e~~G~i~~~~~~g~~~~~v~~~~--~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 3 NPRSMAFLPDG-RLLV-AERSGRIWVVDKDGSLKTPVADLP--EVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG 78 (331)
T ss_dssp SEEEEEEETTS-CEEE-EETTTEEEEEETTTEECEEEEE-T--TTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred CceEEEEeCCC-cEEE-EeCCceEEEEeCCCcCcceecccc--cccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence 46789999998 5555 466999999993332101000000 112234456789999994 11244333321
Q ss_pred ---CeEEEEeCCCccC-Cceee-eeeeeec---cCccEEEEEeeCCCCCEEEEEecCC-------------cEEEEECCC
Q 015484 189 ---NKICLWDVSALAQ-DKVID-AMHVYEA---HESVVEDVSWHLKNENLFGSAGDDC-------------QLMIWDLRT 247 (406)
Q Consensus 189 ---g~i~iwd~~~~~~-~~~~~-~~~~~~~---~~~~i~~i~~~p~~~~~l~~~~~dg-------------~i~i~d~~~ 247 (406)
..|.-|....... ....+ .+..... .......|.|.| ++.++++.+..+ .|.-.+..
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d- 156 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD- 156 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-
T ss_pred CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEeccc-
Confidence 2344454443310 00011 1111111 233456699999 557777766433 23333322
Q ss_pred Ccc-------------cccc-cccCCCeeEEEecCC-CCcEEEE-EeCCCcEEEEeCCCCC-------------------
Q 015484 248 NQT-------------QQRV-KAHEKEVNYLSFNPY-NEWVLAT-ASSDTTVALFDMRKMT------------------- 292 (406)
Q Consensus 248 ~~~-------------~~~~-~~~~~~v~~i~~~~~-~~~~l~~-~~~dg~i~vwd~~~~~------------------- 292 (406)
++. ...+ .++ .....++|+|. +. ++++ .+.++.=.|--++.+.
T Consensus 157 G~~p~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~-l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~ 234 (331)
T PF07995_consen 157 GSIPADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGR-LWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIG 234 (331)
T ss_dssp SSB-TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTE-EEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-EC
T ss_pred CcCCCCCccccCCCceEEEEEeCC-CccccEEEECCCCc-EEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccc
Confidence 110 0011 111 22457899998 65 3333 2223222222122111
Q ss_pred ---------CCcEEecCCCCCeEEEEEcCCCC------CEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecC
Q 015484 293 ---------VPLHILSSHTEEVFQVEWDPNHE------TVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG 357 (406)
Q Consensus 293 ---------~~~~~~~~h~~~v~~i~~~p~~~------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (406)
.|+..+..| ..+..+.|-.... .++++.-..+.|....+...+... ........
T Consensus 235 ~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~----------~~~~~~~~ 303 (331)
T PF07995_consen 235 DAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVT----------EEEEFLGG 303 (331)
T ss_dssp TGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEE----------EEEEECTT
T ss_pred cccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCcc----------ceEEcccc
Confidence 134444433 5677777764321 245555556677766665321110 11111234
Q ss_pred CCCCeeeEEeCCCCCcEEEEEeCCCcEE
Q 015484 358 HKAKISDFSWNKNDPWVISSVADDNTVQ 385 (406)
Q Consensus 358 h~~~v~~~~~s~~~~~~l~s~~~dg~i~ 385 (406)
....+.++++.|+|. ++++...+|.|.
T Consensus 304 ~~~r~~~v~~~pDG~-Lyv~~d~~G~iy 330 (331)
T PF07995_consen 304 FGGRPRDVAQGPDGA-LYVSDDSDGKIY 330 (331)
T ss_dssp SSS-EEEEEEETTSE-EEEEE-TTTTEE
T ss_pred CCCCceEEEEcCCCe-EEEEECCCCeEe
Confidence 445799999999998 677767788763
No 411
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.54 E-value=2.9 Score=39.04 Aligned_cols=139 Identities=15% Similarity=0.185 Sum_probs=82.5
Q ss_pred EEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCC-------CCCEEEEEecCCcEEEEECCCCcc-ccc
Q 015484 182 LVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLK-------NENLFGSAGDDCQLMIWDLRTNQT-QQR 253 (406)
Q Consensus 182 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~-------~~~~l~~~~~dg~i~i~d~~~~~~-~~~ 253 (406)
+..|+.-..+.-.|++.++.. ..+..|... -+.|.|. ....| +|-.+..|.-.|.|.... +..
T Consensus 483 ~~dg~~~~kLykmDIErGkvv------eeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 483 YLDGGERDKLYKMDIERGKVV------EEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred EecCCCcccceeeecccceee------eEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccCCceee
Confidence 344555667777788776543 333334433 3556652 12233 455566666668775331 111
Q ss_pred --cc--ccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEE
Q 015484 254 --VK--AHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMV 329 (406)
Q Consensus 254 --~~--~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~i 329 (406)
.+ .......|..-...| ++|+++..|-|++||.-. ......+.+-...|..|..+.+|.++|+|| ...+.+
T Consensus 554 ~esKdY~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL 628 (776)
T COG5167 554 VESKDYKTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLL 628 (776)
T ss_pred eeehhccccccccccccccCc--eEEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEee--cceEEE
Confidence 11 112223333333333 899999999999999654 222445666678899999999999767666 457777
Q ss_pred EeCCC
Q 015484 330 WDLNR 334 (406)
Q Consensus 330 wd~~~ 334 (406)
-|++-
T Consensus 629 ~d~~i 633 (776)
T COG5167 629 TDVPI 633 (776)
T ss_pred Eeccc
Confidence 77754
No 412
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.50 E-value=0.0069 Score=55.12 Aligned_cols=147 Identities=14% Similarity=0.212 Sum_probs=100.1
Q ss_pred eeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCC
Q 015484 118 VNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVS 197 (406)
Q Consensus 118 v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~ 197 (406)
.....|-|.+.+ ++.++.+..+..||-.... ..-...++....++|..+++..++.+-..+.+.+||++
T Consensus 37 pi~~~w~~e~~n-lavaca~tiv~~YD~agq~----------~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n 105 (615)
T KOG2247|consen 37 PIIHRWRPEGHN-LAVACANTIVIYYDKAGQV----------ILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVN 105 (615)
T ss_pred cceeeEecCCCc-eehhhhhhHHHhhhhhcce----------ecccCCchhHhhhhhccccchhhhhhhcCCCeeechhh
Confidence 334567787766 6777778888888876621 11112345667889998887567777788999999998
Q ss_pred CccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEE
Q 015484 198 ALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATA 277 (406)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~ 277 (406)
+..... + ..-..+.... +.|++ +...++.+...|.+.+++.++.+.......|...+++++|.+.+. .+.+
T Consensus 106 ~eytqq-L---E~gg~~s~sl--l~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~--vil~ 176 (615)
T KOG2247|consen 106 SEYTQQ-L---ESGGTSSKSL--LAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY--VILC 176 (615)
T ss_pred hhhHHH-H---hccCcchHHH--Hhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce--eeec
Confidence 743211 1 1001122222 67887 677777888999999999988776666666889999999998764 5666
Q ss_pred eCCCcEE
Q 015484 278 SSDTTVA 284 (406)
Q Consensus 278 ~~dg~i~ 284 (406)
+.|..+.
T Consensus 177 dcd~~L~ 183 (615)
T KOG2247|consen 177 DCDNTLS 183 (615)
T ss_pred CcHHHHH
Confidence 6665443
No 413
>PHA02790 Kelch-like protein; Provisional
Probab=94.30 E-value=3.3 Score=39.70 Aligned_cols=147 Identities=7% Similarity=-0.070 Sum_probs=69.7
Q ss_pred CCCEEEEEecC--CcEEEEECCCCcc--cccccccCCCeeEEEecCCCCcEEEEEeCCC---cEEEEeCCCCCC-CcEEe
Q 015484 227 NENLFGSAGDD--CQLMIWDLRTNQT--QQRVKAHEKEVNYLSFNPYNEWVLATASSDT---TVALFDMRKMTV-PLHIL 298 (406)
Q Consensus 227 ~~~~l~~~~~d--g~i~i~d~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~-~~~~~ 298 (406)
++.+++.||.+ ..+..||..+++. +..+.........+.. ++. +.+.|+.++ .+..||.++..- .+..+
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~--~g~-IYviGG~~~~~~~ve~ydp~~~~W~~~~~m 394 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI--NNV-IYVIGGHSETDTTTEYLLPNHDQWQFGPST 394 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE--CCE-EEEecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence 57888888754 3577888765533 2222211111122222 354 777777653 467888775321 01111
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEE
Q 015484 299 SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSV 378 (406)
Q Consensus 299 ~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~ 378 (406)
.........+.+ ++ .+.+.| |.+.+||..+.. ...+............+.. +++ +.+.|
T Consensus 395 ~~~r~~~~~~~~--~~-~IYv~G---G~~e~ydp~~~~------------W~~~~~m~~~r~~~~~~v~--~~~-IYviG 453 (480)
T PHA02790 395 YYPHYKSCALVF--GR-RLFLVG---RNAEFYCESSNT------------WTLIDDPIYPRDNPELIIV--DNK-LLLIG 453 (480)
T ss_pred CCccccceEEEE--CC-EEEEEC---CceEEecCCCCc------------EeEcCCCCCCccccEEEEE--CCE-EEEEC
Confidence 111111112222 33 355555 356778875421 1111111101111112222 445 77777
Q ss_pred eCC-----CcEEEEeCCCcccCCC
Q 015484 379 ADD-----NTVQVWQMTDSIYRDD 397 (406)
Q Consensus 379 ~~d-----g~i~iw~~~~~~~~~~ 397 (406)
|.+ ..+..||+.++.+...
T Consensus 454 G~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 454 GFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred CcCCCcccceEEEEECCCCeEEec
Confidence 754 4588999988877543
No 414
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.28 E-value=3.6 Score=36.44 Aligned_cols=154 Identities=13% Similarity=0.132 Sum_probs=75.6
Q ss_pred eCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEE
Q 015484 163 KGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMI 242 (406)
Q Consensus 163 ~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i 242 (406)
..-.+.+..+.-+++|. ++++++.-....-||--.. ...+.. ......|..+.|.| ++.+.+ ....|.|++
T Consensus 141 ~~~~gs~~~~~r~~dG~-~vavs~~G~~~~s~~~G~~----~w~~~~--r~~~~riq~~gf~~-~~~lw~-~~~Gg~~~~ 211 (302)
T PF14870_consen 141 SETSGSINDITRSSDGR-YVAVSSRGNFYSSWDPGQT----TWQPHN--RNSSRRIQSMGFSP-DGNLWM-LARGGQIQF 211 (302)
T ss_dssp -S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-S----S-EEEE----SSS-EEEEEE-T-TS-EEE-EETTTEEEE
T ss_pred cCCcceeEeEEECCCCc-EEEEECcccEEEEecCCCc----cceEEc--cCccceehhceecC-CCCEEE-EeCCcEEEE
Confidence 34457788888899888 8877766555667775431 111111 22357899999998 456554 448888888
Q ss_pred EE-CCCCccc----ccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEE--ecCCCCCeEEEEEcCCCC
Q 015484 243 WD-LRTNQTQ----QRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHI--LSSHTEEVFQVEWDPNHE 315 (406)
Q Consensus 243 ~d-~~~~~~~----~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~h~~~v~~i~~~p~~~ 315 (406)
=+ ....+.. ..+....-.+..++|.+.+. +.++|+ .|.+. .....++.=.+. ...-...+..|.|.+..+
T Consensus 212 s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~ 288 (302)
T PF14870_consen 212 SDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK 288 (302)
T ss_dssp EE-TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEES-TT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTE
T ss_pred ccCCCCccccccccCCcccCceeeEEEEecCCCC-EEEEeC-CccEE-EeCCCCccceECccccCCCCceEEEEEcCCCc
Confidence 77 2222221 11222334478999999877 666555 45443 333333321111 112345688899876654
Q ss_pred CEEEEEeCCCcEEEE
Q 015484 316 TVLASSADDRRLMVW 330 (406)
Q Consensus 316 ~~l~s~~~dg~i~iw 330 (406)
-...+.+|.|.-|
T Consensus 289 --gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 289 --GFVLGQDGVLLRY 301 (302)
T ss_dssp --EEEE-STTEEEEE
T ss_pred --eEEECCCcEEEEe
Confidence 3345568877655
No 415
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.21 E-value=2.7 Score=41.58 Aligned_cols=149 Identities=11% Similarity=0.113 Sum_probs=89.2
Q ss_pred eEEEecCCCeEEEEeCCCccCCceeeee-----------------eeeeccCccEEEEEeeC-CCCCEEEEEecCCcEEE
Q 015484 181 YLVSGSHDNKICLWDVSALAQDKVIDAM-----------------HVYEAHESVVEDVSWHL-KNENLFGSAGDDCQLMI 242 (406)
Q Consensus 181 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----------------~~~~~~~~~i~~i~~~p-~~~~~l~~~~~dg~i~i 242 (406)
+|+.|. .+.|.||++.........++. .... ....|+-+.... .+..+|+.+.+||.|.+
T Consensus 51 ~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p-~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 51 LLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWP-FPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred EEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCC-CCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 666654 678999988654321110000 0000 223355544322 25678889999999999
Q ss_pred EECCC-------C----cc------cc-cc-cccCCCeeEEEec--CCCCcEEEEEeCCCcEEEEeCCCC--CCCcEEec
Q 015484 243 WDLRT-------N----QT------QQ-RV-KAHEKEVNYLSFN--PYNEWVLATASSDTTVALFDMRKM--TVPLHILS 299 (406)
Q Consensus 243 ~d~~~-------~----~~------~~-~~-~~~~~~v~~i~~~--~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~ 299 (406)
|.+++ . +. +. .+ ..-...+.+++++ ...+ +||+++....|.||-+... +.....-.
T Consensus 129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~r-lIAVSsNs~~VTVFaf~l~~~r~~~~~s~ 207 (717)
T PF08728_consen 129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSR-LIAVSSNSQEVTVFAFALVDERFYHVPSH 207 (717)
T ss_pred EEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcce-EEEEecCCceEEEEEEecccccccccccc
Confidence 97631 0 00 00 01 1134567889988 6666 8888888888888755442 11111122
Q ss_pred CCCCCeEEEEEcCCC--C---CEEEEEeCCCcEEEEeC
Q 015484 300 SHTEEVFQVEWDPNH--E---TVLASSADDRRLMVWDL 332 (406)
Q Consensus 300 ~h~~~v~~i~~~p~~--~---~~l~s~~~dg~i~iwd~ 332 (406)
.|...|.+|+|-++. + ..+++++-.|.+.+|++
T Consensus 208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 366789999997754 1 15778889999999888
No 416
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.18 E-value=1.1 Score=40.96 Aligned_cols=155 Identities=10% Similarity=0.120 Sum_probs=91.3
Q ss_pred EEEEeeCCCCCEEEEEecCCcEEEEECCCCcc--cccc-cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC--
Q 015484 219 EDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT--QQRV-KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV-- 293 (406)
Q Consensus 219 ~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-- 293 (406)
+.+-|.. .++.+++ ...|.+.-|-+..... .-.+ ....++|.++.|+++.+ .||+--.+..|.+++....+.
T Consensus 26 ngvFfDD-aNkqlfa-vrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 26 NGVFFDD-ANKQLFA-VRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred cceeecc-CcceEEE-EecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhh
Confidence 4444553 3333333 3344566665554332 2222 23467999999999999 999999999999998843221
Q ss_pred -CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCC
Q 015484 294 -PLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDP 372 (406)
Q Consensus 294 -~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 372 (406)
.....+..+..|.+..|....+ +|-.+ +.-+-+|-..... ..+.....|...|.-..|+++.+
T Consensus 103 ~~~~~ck~k~~~IlGF~W~~s~e--~A~i~-~~G~e~y~v~pek-------------rslRlVks~~~nvnWy~yc~et~ 166 (657)
T KOG2377|consen 103 EYTQECKTKNANILGFCWTSSTE--IAFIT-DQGIEFYQVLPEK-------------RSLRLVKSHNLNVNWYMYCPETA 166 (657)
T ss_pred HHHHHhccCcceeEEEEEecCee--EEEEe-cCCeEEEEEchhh-------------hhhhhhhhcccCccEEEEccccc
Confidence 1223344455699999998754 55554 3346677665422 22223345667788888888877
Q ss_pred cEEEEEe-CCCcEEEEeCCCc
Q 015484 373 WVISSVA-DDNTVQVWQMTDS 392 (406)
Q Consensus 373 ~~l~s~~-~dg~i~iw~~~~~ 392 (406)
.++.+.+ ..+.+.=+.+..+
T Consensus 167 v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 167 VILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred eEeeeccccccccccEEEeec
Confidence 5444444 4444444444443
No 417
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.15 E-value=3.4 Score=35.55 Aligned_cols=134 Identities=13% Similarity=0.206 Sum_probs=78.0
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeee
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAM 208 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 208 (406)
.+....-.++...+||..+. +...++.- .+..+.++ .++. .|+.......|..+|..+.+..+.+...
T Consensus 101 ~l~qLTWk~~~~f~yd~~tl--------~~~~~~~y-~~EGWGLt--~dg~-~Li~SDGS~~L~~~dP~~f~~~~~i~V~ 168 (264)
T PF05096_consen 101 KLYQLTWKEGTGFVYDPNTL--------KKIGTFPY-PGEGWGLT--SDGK-RLIMSDGSSRLYFLDPETFKEVRTIQVT 168 (264)
T ss_dssp EEEEEESSSSEEEEEETTTT--------EEEEEEE--SSS--EEE--ECSS-CEEEE-SSSEEEEE-TTT-SEEEEEE-E
T ss_pred EEEEEEecCCeEEEEccccc--------eEEEEEec-CCcceEEE--cCCC-EEEEECCccceEEECCcccceEEEEEEE
Confidence 34445567889999999873 33444432 35677887 3466 5666656678999998775443333211
Q ss_pred eeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccc---------------ccCCCeeEEEecCCCCcE
Q 015484 209 HVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK---------------AHEKEVNYLSFNPYNEWV 273 (406)
Q Consensus 209 ~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------------~~~~~v~~i~~~~~~~~~ 273 (406)
.-...-..++.+.|. ++.+.|-.-....|...|..+|+.+..+. ....-.+.|+++|..+.+
T Consensus 169 -~~g~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l 245 (264)
T PF05096_consen 169 -DNGRPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRL 245 (264)
T ss_dssp -ETTEE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEE
T ss_pred -ECCEECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEE
Confidence 000112356777777 57777766667778888888887654330 013468899999998866
Q ss_pred EEEE
Q 015484 274 LATA 277 (406)
Q Consensus 274 l~~~ 277 (406)
++||
T Consensus 246 ~vTG 249 (264)
T PF05096_consen 246 FVTG 249 (264)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6665
No 418
>PHA02790 Kelch-like protein; Provisional
Probab=94.12 E-value=3.7 Score=39.35 Aligned_cols=141 Identities=10% Similarity=-0.033 Sum_probs=65.7
Q ss_pred cEEEEEeCCC-----eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC--CeEEEEeCCCccC
Q 015484 129 NLVGTKTSSC-----EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD--NKICLWDVSALAQ 201 (406)
Q Consensus 129 ~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~ 201 (406)
.++++|+.++ .+..||..... +.....+.........+.. ++. ..+.|+.+ .++..||..+..
T Consensus 273 ~lyviGG~~~~~~~~~v~~Ydp~~~~------W~~~~~m~~~r~~~~~v~~--~~~-iYviGG~~~~~sve~ydp~~n~- 342 (480)
T PHA02790 273 VVYLIGGWMNNEIHNNAIAVNYISNN------WIPIPPMNSPRLYASGVPA--NNK-LYVVGGLPNPTSVERWFHGDAA- 342 (480)
T ss_pred EEEEEcCCCCCCcCCeEEEEECCCCE------EEECCCCCchhhcceEEEE--CCE-EEEECCcCCCCceEEEECCCCe-
Confidence 5677777543 46677776632 2112222111111122222 344 66777754 357778765432
Q ss_pred CceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC---cEEEEECCCCcccc--cccccCCCeeEEEecCCCCcEEEE
Q 015484 202 DKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC---QLMIWDLRTNQTQQ--RVKAHEKEVNYLSFNPYNEWVLAT 276 (406)
Q Consensus 202 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg---~i~i~d~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~l~~ 276 (406)
+..+..+....... +++.. ++.+.+.||.++ .+..||.++.+-.. .+.........+.+ ++. +.+.
T Consensus 343 ---W~~~~~l~~~r~~~-~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~--~~~-IYv~ 413 (480)
T PHA02790 343 ---WVNMPSLLKPRCNP-AVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF--GRR-LFLV 413 (480)
T ss_pred ---EEECCCCCCCCccc-EEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE--CCE-EEEE
Confidence 21111111111111 22222 578888887654 46788887654322 11111111112222 344 6666
Q ss_pred EeCCCcEEEEeCCCC
Q 015484 277 ASSDTTVALFDMRKM 291 (406)
Q Consensus 277 ~~~dg~i~vwd~~~~ 291 (406)
| |.+.+||.++.
T Consensus 414 G---G~~e~ydp~~~ 425 (480)
T PHA02790 414 G---RNAEFYCESSN 425 (480)
T ss_pred C---CceEEecCCCC
Confidence 6 35778888754
No 419
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.80 E-value=0.011 Score=53.89 Aligned_cols=145 Identities=12% Similarity=0.178 Sum_probs=97.9
Q ss_pred eeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC
Q 015484 169 GYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN 248 (406)
Q Consensus 169 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~ 248 (406)
.....|-+.+. -++.++.+..+..||-..... .. ...++...+++|..+.+..++.+-..+.+.+||+.+.
T Consensus 37 pi~~~w~~e~~-nlavaca~tiv~~YD~agq~~-------le-~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~e 107 (615)
T KOG2247|consen 37 PIIHRWRPEGH-NLAVACANTIVIYYDKAGQVI-------LE-LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSE 107 (615)
T ss_pred cceeeEecCCC-ceehhhhhhHHHhhhhhccee-------cc-cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhh
Confidence 34567888887 477777888899998543211 11 1234556678888766667777788899999999865
Q ss_pred cccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCc
Q 015484 249 QTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRR 326 (406)
Q Consensus 249 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~ 326 (406)
...+--.+....-.-+.|++... .++.|...|.+.+++.+.... +...-.|...+++++|.+.+. .+.++.|..
T Consensus 108 ytqqLE~gg~~s~sll~wsKg~~-el~ig~~~gn~viynhgtsR~-iiv~Gkh~RRgtq~av~lEd~--vil~dcd~~ 181 (615)
T KOG2247|consen 108 YTQQLESGGTSSKSLLAWSKGTP-ELVIGNNAGNIVIYNHGTSRR-IIVMGKHQRRGTQIAVTLEDY--VILCDCDNT 181 (615)
T ss_pred hHHHHhccCcchHHHHhhccCCc-cccccccccceEEEeccchhh-hhhhcccccceeEEEecccce--eeecCcHHH
Confidence 43221112222222267888887 788888999999999887544 333444889999999999884 555555533
No 420
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.76 E-value=3.3 Score=41.54 Aligned_cols=81 Identities=20% Similarity=0.374 Sum_probs=54.5
Q ss_pred ccEEEEEeeCCCCCEEEEEecCCcEEEEECCC----------Ccc---cccc--------cccCCCeeEEEecCCC--Cc
Q 015484 216 SVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT----------NQT---QQRV--------KAHEKEVNYLSFNPYN--EW 272 (406)
Q Consensus 216 ~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~----------~~~---~~~~--------~~~~~~v~~i~~~~~~--~~ 272 (406)
-.|..|..+| .+.+++..|..| |.|..+.. ++. ..++ ......|..+.|+|.+ ..
T Consensus 85 f~v~~i~~n~-~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNP-TGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECC-CCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 4688899998 678777777765 44444421 111 0111 2345678899999974 23
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcEEe
Q 015484 273 VLATASSDTTVALFDMRKMTVPLHIL 298 (406)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~ 298 (406)
.|++-..|+.+++||+.....|...+
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~~p~~v~ 188 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQHPWQVL 188 (717)
T ss_pred eEEEEecCCEEEEEecCCCCCCeEEE
Confidence 78888999999999998766655443
No 421
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.57 E-value=3.8 Score=34.26 Aligned_cols=95 Identities=11% Similarity=0.167 Sum_probs=62.6
Q ss_pred cEEEEEeeCCCCCEEEEEecCCcEEEEE--CCCCccc-----ccccc---cC-CCeeEEEecCCCCcEEEEEeCCCcEEE
Q 015484 217 VVEDVSWHLKNENLFGSAGDDCQLMIWD--LRTNQTQ-----QRVKA---HE-KEVNYLSFNPYNEWVLATASSDTTVAL 285 (406)
Q Consensus 217 ~i~~i~~~p~~~~~l~~~~~dg~i~i~d--~~~~~~~-----~~~~~---~~-~~v~~i~~~~~~~~~l~~~~~dg~i~v 285 (406)
--+.++|+.+...+.++-+.+-.|.-|| ..++... ..++. .. ..--.++....|. +.++.-..++|..
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~-L~Va~~ng~~V~~ 237 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN-LYVATFNGGTVQK 237 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-EEEEEecCcEEEE
Confidence 3467889875556666667777887777 5555431 11111 01 1112344455666 7777777889999
Q ss_pred EeCCCCCCCcEEecCCCCCeEEEEEcCC
Q 015484 286 FDMRKMTVPLHILSSHTEEVFQVEWDPN 313 (406)
Q Consensus 286 wd~~~~~~~~~~~~~h~~~v~~i~~~p~ 313 (406)
.|..+++. +..+......|++++|-..
T Consensus 238 ~dp~tGK~-L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 238 VDPTTGKI-LLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred ECCCCCcE-EEEEEcCCCceEEEEecCC
Confidence 99999876 7777777899999999754
No 422
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.41 E-value=3.4 Score=43.24 Aligned_cols=40 Identities=8% Similarity=0.135 Sum_probs=32.5
Q ss_pred EEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 015484 107 EIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAK 147 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~ 147 (406)
......+.+.....++|.|.. .++|.++.+|.|++|....
T Consensus 27 ~~~~~~G~~~~~~~~afD~~q-~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 27 DKTNRHGFPSTPSALAFDPTQ-GLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred ccceecCCCCCCcceeecccc-ceEEEEEecccEEEecccc
Confidence 334455666788889999988 6899999999999998765
No 423
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.37 E-value=9.8 Score=38.31 Aligned_cols=82 Identities=17% Similarity=0.208 Sum_probs=53.3
Q ss_pred CCCeeEEEecCCCCCeEEEecCCCeEEEEeCCC--ccC------Cceeeeeee------e-eccCccEEEEEeeCCC--C
Q 015484 166 DKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSA--LAQ------DKVIDAMHV------Y-EAHESVVEDVSWHLKN--E 228 (406)
Q Consensus 166 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~------~~~~~~~~~------~-~~~~~~i~~i~~~p~~--~ 228 (406)
.-.|..|..+++|. +|+..|..|. .|..+.. +.. ...+.|... + ......|..+.|+|.+ +
T Consensus 84 ~f~v~~i~~n~~g~-~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 84 LFEVHQISLNPTGS-LLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred ceeEEEEEECCCCC-EEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 35788999999999 7877777664 4444432 100 112222111 1 1334678999999963 5
Q ss_pred CEEEEEecCCcEEEEECCCCc
Q 015484 229 NLFGSAGDDCQLMIWDLRTNQ 249 (406)
Q Consensus 229 ~~l~~~~~dg~i~i~d~~~~~ 249 (406)
..|++-+.|+.+|+||+....
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CeEEEEecCCEEEEEecCCCC
Confidence 778888999999999997543
No 424
>PRK10115 protease 2; Provisional
Probab=93.36 E-value=9.9 Score=38.32 Aligned_cols=198 Identities=7% Similarity=-0.003 Sum_probs=98.1
Q ss_pred CceeEEEEcCCCCcEEEEE-eCCC----eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC--
Q 015484 116 GEVNRARCMPQKPNLVGTK-TSSC----EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD-- 188 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~-~~dg----~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-- 188 (406)
-.+..+.++|++. +||.+ ..+| .|++.|+.++... ...+.+ . -..++|.++++.++++...+
T Consensus 127 ~~l~~~~~Spdg~-~la~~~d~~G~E~~~l~v~d~~tg~~l-------~~~i~~-~--~~~~~w~~D~~~~~y~~~~~~~ 195 (686)
T PRK10115 127 YTLGGMAITPDNT-IMALAEDFLSRRQYGIRFRNLETGNWY-------PELLDN-V--EPSFVWANDSWTFYYVRKHPVT 195 (686)
T ss_pred EEEeEEEECCCCC-EEEEEecCCCcEEEEEEEEECCCCCCC-------CccccC-c--ceEEEEeeCCCEEEEEEecCCC
Confidence 3466788999995 45544 3333 5888888763210 011111 1 14699999888455554322
Q ss_pred ---CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe---cCCcEEEEECC--CCcccccccccCCC
Q 015484 189 ---NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG---DDCQLMIWDLR--TNQTQQRVKAHEKE 260 (406)
Q Consensus 189 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~---~dg~i~i~d~~--~~~~~~~~~~~~~~ 260 (406)
..|..+++.++..... ..+........-..+.+.++..++..+ .++.+.+++.. .+.....+......
T Consensus 196 ~~~~~v~~h~lgt~~~~d~----lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 271 (686)
T PRK10115 196 LLPYQVWRHTIGTPASQDE----LVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDH 271 (686)
T ss_pred CCCCEEEEEECCCChhHCe----EEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCC
Confidence 3577778777632211 112222222221223332444443332 34578888853 23322222212222
Q ss_pred eeEEEecCCCCcEEEEEeCC-C--cEEEEeCCCCCCCcEEecCC-C-CCeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 015484 261 VNYLSFNPYNEWVLATASSD-T--TVALFDMRKMTVPLHILSSH-T-EEVFQVEWDPNHETVLASSADDRRLMVWDLN 333 (406)
Q Consensus 261 v~~i~~~~~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~h-~-~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~ 333 (406)
...+. +..+. +++....+ . .|...++..... ...+..+ . ..|..+.+. ++.++++...+|.-+++-+.
T Consensus 272 ~~~~~-~~~~~-ly~~tn~~~~~~~l~~~~~~~~~~-~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 272 EYSLD-HYQHR-FYLRSNRHGKNFGLYRTRVRDEQQ-WEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred EEEEE-eCCCE-EEEEEcCCCCCceEEEecCCCccc-CeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEc
Confidence 22222 33333 33333222 2 344445443222 3344444 2 367888887 33578888888887776654
No 425
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.33 E-value=5.5 Score=35.33 Aligned_cols=242 Identities=11% Similarity=0.061 Sum_probs=102.5
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCC--CCCeeEEEecCCCCCeEEEecCCC
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGH--DKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
++-...+..|.|.... .-+|+|. .|. |+...+... .+.+...-... .-...+|.|.. .. .+++| ..|
T Consensus 13 l~t~~~l~dV~F~d~~-~G~~VG~-~g~--il~T~DGG~----tW~~~~~~~~~~~~~~l~~I~f~~-~~-g~ivG-~~g 81 (302)
T PF14870_consen 13 LPTDKPLLDVAFVDPN-HGWAVGA-YGT--ILKTTDGGK----TWQPVSLDLDNPFDYHLNSISFDG-NE-GWIVG-EPG 81 (302)
T ss_dssp -S-SS-EEEEEESSSS--EEEEET-TTE--EEEESSTTS----S-EE-----S-----EEEEEEEET-TE-EEEEE-ETT
T ss_pred cCCCCceEEEEEecCC-EEEEEec-CCE--EEEECCCCc----cccccccCCCccceeeEEEEEecC-Cc-eEEEc-CCc
Confidence 4455689999999555 4566654 454 344444321 12211111110 12356777764 23 44444 455
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccc-ccccCCCeeEEEecC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQR-VKAHEKEVNYLSFNP 268 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~i~~~~ 268 (406)
. .+...+.+.. ...+..-..-......+.... ..... .++..|.|.. ..+.++.-.. .......+..+.-++
T Consensus 82 ~-ll~T~DgG~t---W~~v~l~~~lpgs~~~i~~l~-~~~~~-l~~~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~ 154 (302)
T PF14870_consen 82 L-LLHTTDGGKT---WERVPLSSKLPGSPFGITALG-DGSAE-LAGDRGAIYR-TTDGGKTWQAVVSETSGSINDITRSS 154 (302)
T ss_dssp E-EEEESSTTSS----EE----TT-SS-EEEEEEEE-TTEEE-EEETT--EEE-ESSTTSSEEEEE-S----EEEEEE-T
T ss_pred e-EEEecCCCCC---cEEeecCCCCCCCeeEEEEcC-CCcEE-EEcCCCcEEE-eCCCCCCeeEcccCCcceeEeEEECC
Confidence 3 3333333322 221111111122233333332 23333 3455555433 2334444332 234457788888899
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGP 348 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 348 (406)
+|. +++++..-....-||.-...- ...-......|..|.|.|++. +.+ ....|.|++=+.........
T Consensus 155 dG~-~vavs~~G~~~~s~~~G~~~w-~~~~r~~~~riq~~gf~~~~~-lw~-~~~Gg~~~~s~~~~~~~~w~-------- 222 (302)
T PF14870_consen 155 DGR-YVAVSSRGNFYSSWDPGQTTW-QPHNRNSSRRIQSMGFSPDGN-LWM-LARGGQIQFSDDPDDGETWS-------- 222 (302)
T ss_dssp TS--EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-TTEEEEE---------
T ss_pred CCc-EEEEECcccEEEEecCCCccc-eEEccCccceehhceecCCCC-EEE-EeCCcEEEEccCCCCccccc--------
Confidence 998 777776544556777653221 112223457899999999986 333 44889998877222111000
Q ss_pred CeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEE
Q 015484 349 PELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQV 386 (406)
Q Consensus 349 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~i 386 (406)
+.+.......-.+.+++|.+++. +.++|+ .|.+..
T Consensus 223 -~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l~~ 257 (302)
T PF14870_consen 223 -EPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTLLV 257 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS--EEEEES-TT-EEE
T ss_pred -cccCCcccCceeeEEEEecCCCC-EEEEeC-CccEEE
Confidence 00000011123488999999887 666655 554433
No 426
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.21 E-value=5.3 Score=36.78 Aligned_cols=146 Identities=11% Similarity=0.128 Sum_probs=73.8
Q ss_pred CeeEEEecCCCCCeEEEec-----------CCC-eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe
Q 015484 168 EGYGLSWSPFKEGYLVSGS-----------HDN-KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG 235 (406)
Q Consensus 168 ~v~~l~~~~~~~~~l~s~~-----------~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~ 235 (406)
...+|+|.++|. ++++-. ..+ .|.+++-..+.-. ......+...-.....+++.+ ++ +++ +.
T Consensus 15 ~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~--~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~ 88 (367)
T TIGR02604 15 NPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGK--YDKSNVFAEELSMVTGLAVAV-GG-VYV-AT 88 (367)
T ss_pred CCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCC--cceeEEeecCCCCccceeEec-CC-EEE-eC
Confidence 345889998887 555532 223 6777764332111 111122222234567888887 44 554 44
Q ss_pred cCCcEEEEECCCC-----cc---cccccc----cCCCeeEEEecCCCCcEEEEEeCC------------------CcEEE
Q 015484 236 DDCQLMIWDLRTN-----QT---QQRVKA----HEKEVNYLSFNPYNEWVLATASSD------------------TTVAL 285 (406)
Q Consensus 236 ~dg~i~i~d~~~~-----~~---~~~~~~----~~~~v~~i~~~~~~~~~l~~~~~d------------------g~i~v 285 (406)
.....++.|.... +. +..+.. +....+.+.|.|+|..++..|+.. |.|.-
T Consensus 89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r 168 (367)
T TIGR02604 89 PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR 168 (367)
T ss_pred CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEE
Confidence 4443334455321 11 111221 134477899999998444444211 33444
Q ss_pred EeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEe
Q 015484 286 FDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSA 322 (406)
Q Consensus 286 wd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~ 322 (406)
+|..... +..+...-.....++|+|+++ ++++-.
T Consensus 169 ~~pdg~~--~e~~a~G~rnp~Gl~~d~~G~-l~~tdn 202 (367)
T TIGR02604 169 YNPDGGK--LRVVAHGFQNPYGHSVDSWGD-VFFCDN 202 (367)
T ss_pred EecCCCe--EEEEecCcCCCccceECCCCC-EEEEcc
Confidence 5544322 223322233467899999986 555543
No 427
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=93.01 E-value=6 Score=36.07 Aligned_cols=154 Identities=12% Similarity=0.112 Sum_probs=76.0
Q ss_pred EEecCCCCCeEEEecCCCe--EEEEeCCCccCCceeeeeeeeeccC-ccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC
Q 015484 172 LSWSPFKEGYLVSGSHDNK--ICLWDVSALAQDKVIDAMHVYEAHE-SVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN 248 (406)
Q Consensus 172 l~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~ 248 (406)
=+|.++|+.+|+++..||. +.+.|+.++.. ..+.... .......++|.+ +.++-......|+-.|++++
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i-------~QLTdg~g~~~~g~~~s~~~-~~~~Yv~~~~~l~~vdL~T~ 112 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEI-------TQLTDGPGDNTFGGFLSPDD-RALYYVKNGRSLRRVDLDTL 112 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EE-------EE---SS-B-TTT-EE-TTS-SEEEEEETTTEEEEEETTT-
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEE-------EECccCCCCCccceEEecCC-CeEEEEECCCeEEEEECCcC
Confidence 3678888867777776765 55556666432 1122211 222245567754 55444555568899999998
Q ss_pred cccccccccCCCeeEEEec--CCCCcEEEEEe----------------------CCCcEEEEeCCCCCCCcEEecCCCCC
Q 015484 249 QTQQRVKAHEKEVNYLSFN--PYNEWVLATAS----------------------SDTTVALFDMRKMTVPLHILSSHTEE 304 (406)
Q Consensus 249 ~~~~~~~~~~~~v~~i~~~--~~~~~~l~~~~----------------------~dg~i~vwd~~~~~~~~~~~~~h~~~ 304 (406)
+....+......+-...|. .++. .++..- -...|...|+++++ ...+..-...
T Consensus 113 e~~~vy~~p~~~~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~--~~~v~~~~~w 189 (386)
T PF14583_consen 113 EERVVYEVPDDWKGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE--RKVVFEDTDW 189 (386)
T ss_dssp -EEEEEE--TTEEEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEESS-
T ss_pred cEEEEEECCcccccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc--eeEEEecCcc
Confidence 7655555455555445553 3344 332211 11234555666543 3344444567
Q ss_pred eEEEEEcCCCCCEEEEEeC---CCc-EEEEeCCCCC
Q 015484 305 VFQVEWDPNHETVLASSAD---DRR-LMVWDLNRIG 336 (406)
Q Consensus 305 v~~i~~~p~~~~~l~s~~~---dg~-i~iwd~~~~~ 336 (406)
+..+.|+|..+.+|+-|-+ +.. -+||-++..+
T Consensus 190 lgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg 225 (386)
T PF14583_consen 190 LGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG 225 (386)
T ss_dssp EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS
T ss_pred ccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC
Confidence 8899999999886666554 221 3677666533
No 428
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.98 E-value=10 Score=37.42 Aligned_cols=198 Identities=14% Similarity=0.160 Sum_probs=94.7
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEE
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLW 194 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 194 (406)
-+.+-++..+|..-.-+. +.--.|+||+.... +...+.-....+-.+.|+.+. .|++...+|++.+|
T Consensus 43 ~gGpIAV~r~p~~~~~~~--~a~~~I~If~~sG~---------lL~~~~w~~~~lI~mgWs~~e--eLI~v~k~g~v~Vy 109 (829)
T KOG2280|consen 43 FGGPIAVTRSPSKLVPLY--SARPYIRIFNISGQ---------LLGRILWKHGELIGMGWSDDE--ELICVQKDGTVHVY 109 (829)
T ss_pred cCCceEEEeccccccccc--ccceeEEEEecccc---------chHHHHhcCCCeeeecccCCc--eEEEEeccceEEEe
Confidence 345556666663311122 33456889988762 222222223377799999765 47778899999999
Q ss_pred eCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEE-CCCCcccccc---cccCCCeeEEEecCCC
Q 015484 195 DVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWD-LRTNQTQQRV---KAHEKEVNYLSFNPYN 270 (406)
Q Consensus 195 d~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d-~~~~~~~~~~---~~~~~~v~~i~~~~~~ 270 (406)
++-...... .. + .+......|..+.+.. +.++ +-..+|.+.+-. .... ....+ .....+-+|-...+.+
T Consensus 110 ~~~ge~ie~-~s-v-g~e~~~~~I~ec~~f~--~GVa-vlt~~g~v~~i~~~~~~-~~~~~~diP~~~~~~~~Wt~~~~~ 182 (829)
T KOG2280|consen 110 GLLGEFIES-NS-V-GFESQMSDIVECRFFH--NGVA-VLTVSGQVILINGVEEP-KLRKMPDIPYNELPKSCWTVFQPH 182 (829)
T ss_pred ecchhhhcc-cc-c-ccccccCceeEEEEec--CceE-EEecCCcEEEEcCCCcc-hhhhCCCCCCccCCCcceeEecCC
Confidence 986432111 00 0 0111222344444432 2332 233344444432 2221 12222 1111111222222221
Q ss_pred C--cEEEEEe-CCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 271 E--WVLATAS-SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 271 ~--~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
. ..++--. ..+ ..++-..........+....+.+..+..+|+.+ +|+--...|.|.+-+...
T Consensus 183 ~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~-~laLyt~~G~i~~vs~D~ 247 (829)
T KOG2280|consen 183 RQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRR-FLALYTETGKIWVVSIDL 247 (829)
T ss_pred CcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcc-eEEEEecCCcEEEEecch
Confidence 1 1111111 111 122222222222233333346788999999997 588888899998887765
No 429
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.85 E-value=1.6 Score=40.78 Aligned_cols=84 Identities=19% Similarity=0.327 Sum_probs=52.0
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCC----------eeEEEecCCCCCeeeEEeCCCC--
Q 015484 304 EVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP----------ELLFSHGGHKAKISDFSWNKND-- 371 (406)
Q Consensus 304 ~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----------~~~~~~~~h~~~v~~~~~s~~~-- 371 (406)
.|..+..++.|. .++-+|.+|.+.++=.+..+..... +++.+ ..++... ..-.+..++|+|+.
T Consensus 105 eV~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~---eDgk~~v~CRt~~i~~~~ftss-~~ltl~Qa~WHP~S~~ 179 (741)
T KOG4460|consen 105 EVYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEF---EDGKSTVNCRTTPVAERFFTSS-TSLTLKQAAWHPSSIL 179 (741)
T ss_pred EEEEEEecCCCc-eEEEecCCeeEEEEchhhcCcccee---cCCCceEEEEeecccceeeccC-CceeeeeccccCCccC
Confidence 478889999997 5777777888777654433322111 12211 1222222 22357789999986
Q ss_pred CcEEEEEeCCCcEEEEeCCCc
Q 015484 372 PWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 372 ~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.-.+..-+.|+.||+|+++..
T Consensus 180 D~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 180 DPHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred CceEEEEecCcEEEEEecCCc
Confidence 224555567999999999764
No 430
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.75 E-value=5.9 Score=34.11 Aligned_cols=194 Identities=11% Similarity=0.136 Sum_probs=103.8
Q ss_pred eEEEEEeecCCc--eeEEEEcCCCCcEEEEEeCCC--eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCe
Q 015484 106 VEIAQKIRVDGE--VNRARCMPQKPNLVGTKTSSC--EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGY 181 (406)
Q Consensus 106 ~~~~~~~~h~~~--v~~i~~~p~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 181 (406)
+++.+.++|... ...+.|..++ .++-+.+.-| .|+.+|+.++.... ...+.. .--.-+++... +. +
T Consensus 33 ~~vv~~ypHd~~aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~------~~~l~~-~~FgEGit~~~-d~-l 102 (264)
T PF05096_consen 33 YEVVETYPHDPTAFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQ------SVPLPP-RYFGEGITILG-DK-L 102 (264)
T ss_dssp EEEEEEEE--TT-EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEE------EEE-TT-T--EEEEEEET-TE-E
T ss_pred eEEEEECCCCCcccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEE------EEECCc-cccceeEEEEC-CE-E
Confidence 577888888744 4557776666 5666666666 68888988743211 111211 11122344432 22 4
Q ss_pred EEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccccc----
Q 015484 182 LVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAH---- 257 (406)
Q Consensus 182 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---- 257 (406)
..-.-.++...+||..+.+. +..+. ..+.=..++.. +..++ .......|+++|..+.+....+...
T Consensus 103 ~qLTWk~~~~f~yd~~tl~~------~~~~~-y~~EGWGLt~d--g~~Li-~SDGS~~L~~~dP~~f~~~~~i~V~~~g~ 172 (264)
T PF05096_consen 103 YQLTWKEGTGFVYDPNTLKK------IGTFP-YPGEGWGLTSD--GKRLI-MSDGSSRLYFLDPETFKEVRTIQVTDNGR 172 (264)
T ss_dssp EEEESSSSEEEEEETTTTEE------EEEEE--SSS--EEEEC--SSCEE-EE-SSSEEEEE-TTT-SEEEEEE-EETTE
T ss_pred EEEEecCCeEEEEccccceE------EEEEe-cCCcceEEEcC--CCEEE-EECCccceEEECCcccceEEEEEEEECCE
Confidence 45555788999999987533 23332 23455666632 44554 4444668999998877665555221
Q ss_pred -CCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec---------------CCCCCeEEEEEcCCCCCEEEEE
Q 015484 258 -EKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILS---------------SHTEEVFQVEWDPNHETVLASS 321 (406)
Q Consensus 258 -~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---------------~h~~~v~~i~~~p~~~~~l~s~ 321 (406)
-..++-+.|- +|. +.|=.-....|...|..++.. ...+. ....-.+.|+|+|..+.+++||
T Consensus 173 pv~~LNELE~i-~G~-IyANVW~td~I~~Idp~tG~V-~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 173 PVSNLNELEYI-NGK-IYANVWQTDRIVRIDPETGKV-VGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp E---EEEEEEE-TTE-EEEEETTSSEEEEEETTT-BE-EEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred ECCCcEeEEEE-cCE-EEEEeCCCCeEEEEeCCCCeE-EEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 2345556665 343 444444455666666666543 11110 1135689999999998888877
Q ss_pred e
Q 015484 322 A 322 (406)
Q Consensus 322 ~ 322 (406)
=
T Consensus 250 K 250 (264)
T PF05096_consen 250 K 250 (264)
T ss_dssp T
T ss_pred C
Confidence 3
No 431
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=92.59 E-value=1.7 Score=35.07 Aligned_cols=32 Identities=3% Similarity=0.336 Sum_probs=26.9
Q ss_pred CeeeEEeCCCC-----CcEEEEEeCCCcEEEEeCCCc
Q 015484 361 KISDFSWNKND-----PWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 361 ~v~~~~~s~~~-----~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.|.+++|||.| +.+|++.+.++.|.||.....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 68899999954 448999999999999998753
No 432
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.54 E-value=9 Score=35.72 Aligned_cols=276 Identities=12% Similarity=0.119 Sum_probs=138.7
Q ss_pred hhhhhhcCh--hHhhhhhcCCCCCCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCC
Q 015484 17 FTVWKKNTP--FLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNV 94 (406)
Q Consensus 17 ~~~wk~~~~--~ly~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~ 94 (406)
.++.+++.. -..+.+...++.-|.|.++.-+..... ....+++ -+++.+.|.++... ++. .
T Consensus 49 LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~-------~~~~LaV------LhP~kl~vY~v~~~-~g~-~-- 111 (418)
T PF14727_consen 49 LRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGS-------EDLQLAV------LHPRKLSVYSVSLV-DGT-V-- 111 (418)
T ss_pred EEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCC-------CcceEEE------ecCCEEEEEEEEec-CCC-c--
Confidence 344554332 234688888888899888886542221 0011211 25677777777543 111 0
Q ss_pred CCCCCCCCCCCeEEEEEeecC--CceeEEEEcC----CCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCC
Q 015484 95 GGKNENPVIPKVEIAQKIRVD--GEVNRARCMP----QKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKE 168 (406)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~h~--~~v~~i~~~p----~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~ 168 (406)
+. ....++...+.|. .....+++-| .++.++.+-+.||.+.+|+-+...- ...+.+ ---
T Consensus 112 ----~~--g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f--------~~~lp~-~ll 176 (418)
T PF14727_consen 112 ----EH--GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF--------SRFLPD-FLL 176 (418)
T ss_pred ----cc--CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE--------EEEcCC-CCC
Confidence 11 1234555555554 4444444444 3357899999999999999876321 112222 111
Q ss_pred eeEEEecCCCCCeEEEecCCCeEEEEeCCCcc-----------------CCceeeeeeeeeccCccEEEEE---eeCCCC
Q 015484 169 GYGLSWSPFKEGYLVSGSHDNKICLWDVSALA-----------------QDKVIDAMHVYEAHESVVEDVS---WHLKNE 228 (406)
Q Consensus 169 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----------------~~~~~~~~~~~~~~~~~i~~i~---~~p~~~ 228 (406)
--.+.+.+... .|++++.+..+.-|...... ..+.+.+-..+.- ...+.+|. ++....
T Consensus 177 PgPl~Y~~~tD-sfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~ 254 (418)
T PF14727_consen 177 PGPLCYCPRTD-SFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVRFSSSES 254 (418)
T ss_pred CcCeEEeecCC-EEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEEcCCCCc
Confidence 12467777666 88888888888888753211 1122222222221 22333333 322122
Q ss_pred CEEEEEecCCcEEEEECCCCcccccccccCCCeeEEE-------ecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCC
Q 015484 229 NLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLS-------FNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSH 301 (406)
Q Consensus 229 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~-------~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h 301 (406)
.++ +-+ ..++.+.+- +|......+ ......++. ..|.....+++++.++.+.||.=.+ +..-...
T Consensus 255 ~Iv-vLg-er~Lf~l~~-~G~l~~~kr-Ld~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~----L~WsA~l 326 (418)
T PF14727_consen 255 DIV-VLG-ERSLFCLKD-NGSLRFQKR-LDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT----LVWSAQL 326 (418)
T ss_pred eEE-EEe-cceEEEEcC-CCeEEEEEe-cCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe----EEEecCC
Confidence 333 222 234555554 233221111 121112211 1223223588889999999986432 1111111
Q ss_pred CCCeEEEEE--cCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 302 TEEVFQVEW--DPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 302 ~~~v~~i~~--~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
.....++.. -++-+.+|++-+.+|.+.+-=+.+
T Consensus 327 ~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 327 PHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred CCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 111122222 222244899999999999887766
No 433
>PRK10115 protease 2; Provisional
Probab=92.45 E-value=13 Score=37.43 Aligned_cols=200 Identities=11% Similarity=0.152 Sum_probs=97.2
Q ss_pred CeeEEEecCCCCCeEEEe-cCC----CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC-----
Q 015484 168 EGYGLSWSPFKEGYLVSG-SHD----NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD----- 237 (406)
Q Consensus 168 ~v~~l~~~~~~~~~l~s~-~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d----- 237 (406)
.+..+.|+|+++ +|+.+ +.+ ..|++.|+.++.... ..+.. .-..++|.+++..++++...+
T Consensus 128 ~l~~~~~Spdg~-~la~~~d~~G~E~~~l~v~d~~tg~~l~-----~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~ 198 (686)
T PRK10115 128 TLGGMAITPDNT-IMALAEDFLSRRQYGIRFRNLETGNWYP-----ELLDN---VEPSFVWANDSWTFYYVRKHPVTLLP 198 (686)
T ss_pred EEeEEEECCCCC-EEEEEecCCCcEEEEEEEEECCCCCCCC-----ccccC---cceEEEEeeCCCEEEEEEecCCCCCC
Confidence 456788999988 65554 223 358888887653210 11111 114589998655666655432
Q ss_pred CcEEEEECCCCc--ccccccccCCCee-EEEecCCCCcEEEEEeC--CCcEEEEeCCCCC-CCcEEecCCCCCeEEEEEc
Q 015484 238 CQLMIWDLRTNQ--TQQRVKAHEKEVN-YLSFNPYNEWVLATASS--DTTVALFDMRKMT-VPLHILSSHTEEVFQVEWD 311 (406)
Q Consensus 238 g~i~i~d~~~~~--~~~~~~~~~~~v~-~i~~~~~~~~~l~~~~~--dg~i~vwd~~~~~-~~~~~~~~h~~~v~~i~~~ 311 (406)
..|+.+++.++. ....+........ .+..+.++.++++.... ++.+.+++..... .+...+.........+. +
T Consensus 199 ~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~ 277 (686)
T PRK10115 199 YQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-H 277 (686)
T ss_pred CEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-e
Confidence 367888888773 2233332223233 23334467744433332 3578888854321 11222222222223332 3
Q ss_pred CCCCCEEEEEeC-CCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 312 PNHETVLASSAD-DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 312 p~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
..+ .+++.... ....+|..+.-... .....+.... ....|..+.+.. .+++++...+|.-+++-+.
T Consensus 278 ~~~-~ly~~tn~~~~~~~l~~~~~~~~---------~~~~~l~~~~-~~~~i~~~~~~~--~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 278 YQH-RFYLRSNRHGKNFGLYRTRVRDE---------QQWEELIPPR-ENIMLEGFTLFT--DWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred CCC-EEEEEEcCCCCCceEEEecCCCc---------ccCeEEECCC-CCCEEEEEEEEC--CEEEEEEEeCCEEEEEEEc
Confidence 233 33333322 22333433321100 1122332221 123577788873 3478888888876666554
No 434
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=92.33 E-value=1.6 Score=35.26 Aligned_cols=31 Identities=16% Similarity=0.341 Sum_probs=25.4
Q ss_pred CeeEEEecCCC-----CCeEEEecCCCeEEEEeCCC
Q 015484 168 EGYGLSWSPFK-----EGYLVSGSHDNKICLWDVSA 198 (406)
Q Consensus 168 ~v~~l~~~~~~-----~~~l~s~~~dg~i~iwd~~~ 198 (406)
.+.+++|||.| +.+|++...+|.|.+|....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 68899999954 34788899999999998654
No 435
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=91.84 E-value=7.8 Score=33.49 Aligned_cols=148 Identities=7% Similarity=0.078 Sum_probs=80.9
Q ss_pred ceeEEEEcCCCCcEEEEE--eCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEE
Q 015484 117 EVNRARCMPQKPNLVGTK--TSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLW 194 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 194 (406)
.+...+.++++..+.++. .....++++..... . ...+. ...+..-.|++++. ..+....+...+++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-------~--~~~~~--g~~l~~PS~d~~g~-~W~v~~~~~~~~~~ 92 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-------V--RPVLT--GGSLTRPSWDPDGW-VWTVDDGSGGVRVV 92 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-------c--eeecc--CCccccccccCCCC-EEEEEcCCCceEEE
Confidence 688899999996555544 23445666654431 1 11122 23677889999866 55555556666666
Q ss_pred e-CCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEE--ecCCcEEEEECCC---C--cc----cccccccCCCee
Q 015484 195 D-VSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSA--GDDCQLMIWDLRT---N--QT----QQRVKAHEKEVN 262 (406)
Q Consensus 195 d-~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~--~~dg~i~i~d~~~---~--~~----~~~~~~~~~~v~ 262 (406)
. ...+... ... .........|..+.++|++.++.+.. ..++.|.+--+.. + .. ..........+.
T Consensus 93 ~~~~~g~~~-~~~--v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~ 169 (253)
T PF10647_consen 93 RDSASGTGE-PVE--VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVT 169 (253)
T ss_pred EecCCCcce-eEE--ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcce
Confidence 4 2222211 110 01111112899999999655554444 2356677665432 2 01 111122356789
Q ss_pred EEEecCCCCcEEEEEeCC
Q 015484 263 YLSFNPYNEWVLATASSD 280 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~d 280 (406)
.++|.+++. +++.+...
T Consensus 170 ~v~W~~~~~-L~V~~~~~ 186 (253)
T PF10647_consen 170 DVAWSDDST-LVVLGRSA 186 (253)
T ss_pred eeeecCCCE-EEEEeCCC
Confidence 999999988 54444443
No 436
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.82 E-value=4.5 Score=30.67 Aligned_cols=119 Identities=13% Similarity=0.187 Sum_probs=69.7
Q ss_pred eEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC----CCCeEEEecCCCeEEEE
Q 015484 119 NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF----KEGYLVSGSHDNKICLW 194 (406)
Q Consensus 119 ~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~~~~l~s~~~dg~i~iw 194 (406)
..-+|....+ .|++++..|+|.|++.............++ .+-.-...|++|+-.+- +...|+.|+. ..+..|
T Consensus 2 aiGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i-~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaY 78 (136)
T PF14781_consen 2 AIGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDI-SFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAY 78 (136)
T ss_pred eEEEeCCCce-eEEEEecCCEEEEECCCccccccccccCce-eEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEE
Confidence 3446666675 588888999999999876543221112223 33345677888865442 2336777754 679999
Q ss_pred eCCCccCCceeeeeeeeeccCccEEEEEeeC---CCCCEEEEEecCCcEEEEECCCC
Q 015484 195 DVSALAQDKVIDAMHVYEAHESVVEDVSWHL---KNENLFGSAGDDCQLMIWDLRTN 248 (406)
Q Consensus 195 d~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p---~~~~~l~~~~~dg~i~i~d~~~~ 248 (406)
|+...... .++.-...|+++.+-. ....++++ +-+..|.-||....
T Consensus 79 DV~~N~d~-------Fyke~~DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~G~ 127 (136)
T PF14781_consen 79 DVENNSDL-------FYKEVPDGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYEGN 127 (136)
T ss_pred EcccCchh-------hhhhCccceeEEEEEecCCCCCcEEEE-CceEEEEEeCCCCc
Confidence 99875431 1223345677776632 12344444 44566777775543
No 437
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.81 E-value=0.6 Score=46.37 Aligned_cols=171 Identities=13% Similarity=0.128 Sum_probs=93.7
Q ss_pred eEEEEEeecCCceeEEEEcCC--CCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEE----------
Q 015484 106 VEIAQKIRVDGEVNRARCMPQ--KPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLS---------- 173 (406)
Q Consensus 106 ~~~~~~~~h~~~v~~i~~~p~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~---------- 173 (406)
+.+.-.-+-...+.-+.|+|- +..++..+-.+++|++..+.... ...+.+|...+..++
T Consensus 171 l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~---------~~l~rsHs~~~~d~a~~~~g~~~l~ 241 (1283)
T KOG1916|consen 171 LEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL---------RSLFRSHSQRVTDMAFFAEGVLKLA 241 (1283)
T ss_pred eEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHH---------HHHHHhcCCCcccHHHHhhchhhhe
Confidence 333333334466788888872 22567778888999998877632 233556777666655
Q ss_pred -ecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccC-ccEEEEEeeCCC--------CCEEEEEe-cCCcEEE
Q 015484 174 -WSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHE-SVVEDVSWHLKN--------ENLFGSAG-DDCQLMI 242 (406)
Q Consensus 174 -~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~p~~--------~~~l~~~~-~dg~i~i 242 (406)
.+|+|. .+++++.||.++.|.+.-... ....++...+.|. .+-.|..|+.+. -.++++++ .+..+++
T Consensus 242 ~lSpDGt-v~a~a~~dG~v~f~Qiyi~g~-~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~ 319 (1283)
T KOG1916|consen 242 SLSPDGT-VFAWAISDGSVGFYQIYITGK-IVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKF 319 (1283)
T ss_pred eeCCCCc-EEEEeecCCccceeeeeeecc-ccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeE
Confidence 477777 888888888888887643211 2234555566665 333333343211 01233333 3456788
Q ss_pred EECCCCcccccccccCCCeeEEEecCCCCc-----------EEEEEeCCCcEEEEeCCC
Q 015484 243 WDLRTNQTQQRVKAHEKEVNYLSFNPYNEW-----------VLATASSDTTVALFDMRK 290 (406)
Q Consensus 243 ~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~-----------~l~~~~~dg~i~vwd~~~ 290 (406)
|....-+++ +...-..|..+. -++++- .++.-+-++.|.+|--+.
T Consensus 320 w~~a~w~Cl--l~~~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 320 WAEAPWQCL--LDKLIDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred eeccchhhh--hhhcccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 876655554 222223344444 223321 123344567787875544
No 438
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.76 E-value=0.27 Score=48.59 Aligned_cols=122 Identities=13% Similarity=0.070 Sum_probs=64.7
Q ss_pred CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCC--ccCCceeeeeeeeeccC
Q 015484 138 CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSA--LAQDKVIDAMHVYEAHE 215 (406)
Q Consensus 138 g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~ 215 (406)
+-|++-+.... ......+++..+.+-.++|-..+-..+. -.-|.+.||++.- ++....+. +.......
T Consensus 111 ~~vrvaN~~~s-------m~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~-v~~~~p~g 180 (1283)
T KOG1916|consen 111 NGVRVANQEPS-------MRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLE-VTPITPYG 180 (1283)
T ss_pred hhhhhccCcch-------hHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceE-EeecCcCC
Confidence 44666666542 1112335677788888888654322333 3447789999865 22222111 11122223
Q ss_pred ccEEEEEeeCC--CCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCC
Q 015484 216 SVVEDVSWHLK--NENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 216 ~~i~~i~~~p~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~ 270 (406)
..+.-|.|.|. +..++..+-.++.+++....+... ..+..|...+..++|-..|
T Consensus 181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g 236 (1283)
T KOG1916|consen 181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEG 236 (1283)
T ss_pred CCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhc
Confidence 34455555542 345566666788888877654332 3344577766666654433
No 439
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.70 E-value=8.6 Score=31.87 Aligned_cols=102 Identities=16% Similarity=0.268 Sum_probs=62.2
Q ss_pred CEEEEEecCCcEEEEECCCCc--ccccccccCCCeeEEEecCCCCcEEEEEeCCC------cEEEE-eCCC---CCCCcE
Q 015484 229 NLFGSAGDDCQLMIWDLRTNQ--TQQRVKAHEKEVNYLSFNPYNEWVLATASSDT------TVALF-DMRK---MTVPLH 296 (406)
Q Consensus 229 ~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg------~i~vw-d~~~---~~~~~~ 296 (406)
..|..+...+.|.+|++.+.. ....+. .-+.|..+.++..|+ +|++--.+. .+++| +.|. ...++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GD-YlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGD-YLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccc-eEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 444344666789999998433 244444 347899999999999 777754322 45664 2222 122222
Q ss_pred -EecC---------------------CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 297 -ILSS---------------------HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 297 -~~~~---------------------h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
.+-+ -+.++.+++..|.... |+.|+ ++.+.+|.+..
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-LlVg~-~~~l~lf~l~~ 164 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-LLVGC-GNKLVLFTLKY 164 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-EEEEc-CCEEEEEEEEE
Confidence 1112 1345778888887666 44554 66899998865
No 440
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.65 E-value=8.7 Score=31.85 Aligned_cols=110 Identities=15% Similarity=0.218 Sum_probs=64.1
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC---C---eEEEE---eCCCc
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD---N---KICLW---DVSAL 199 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g---~i~iw---d~~~~ 199 (406)
+.|..+.....|.+|++... ...+...+..- +.|..+.++..|+ +|+|--.+ . .+|+| +....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~------~~~~~~~F~Tv-~~V~~l~y~~~GD-YlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQE------ECPLLCTFSTV-GRVLQLVYSEAGD-YLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred ceEEEEcCCCEEEEEEcccC------CCceeEEEcch-hheeEEEeccccc-eEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 34444466778999999842 34555555543 7899999999998 99986332 2 55664 22211
Q ss_pred cCCce-e---------------e-eeeeee-ccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC
Q 015484 200 AQDKV-I---------------D-AMHVYE-AHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN 248 (406)
Q Consensus 200 ~~~~~-~---------------~-~~~~~~-~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~ 248 (406)
...+. . . .+.... .-..++.+++..|..+++++. .++.+.+|.+...
T Consensus 101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg--~~~~l~lf~l~~~ 165 (215)
T PF14761_consen 101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVG--CGNKLVLFTLKYQ 165 (215)
T ss_pred cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEE--cCCEEEEEEEEEE
Confidence 10000 0 0 001110 123467788888877887743 3457888877643
No 441
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.65 E-value=1.7 Score=36.64 Aligned_cols=64 Identities=11% Similarity=0.118 Sum_probs=45.8
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCcEE------ec-------CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 268 PYNEWVLATASSDTTVALFDMRKMTVPLHI------LS-------SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~------~~-------~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
..+. +|++-+.+|.+++||+.+.+..+.. +. .....|..+..+.+|. -+++-+ +|..+.|+..-
T Consensus 20 ~~~~-~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 20 CNGS-YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-PIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred eCCC-EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC-EEEEEe-CCCEEEecccc
Confidence 3466 7888889999999999987642221 21 3456789999998885 455544 68889998764
No 442
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.52 E-value=5.5 Score=37.45 Aligned_cols=76 Identities=14% Similarity=0.219 Sum_probs=47.8
Q ss_pred CeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC--------Cc----------EEec-CCCCCeEEEEEcCCC--CCEE
Q 015484 260 EVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV--------PL----------HILS-SHTEEVFQVEWDPNH--ETVL 318 (406)
Q Consensus 260 ~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--------~~----------~~~~-~h~~~v~~i~~~p~~--~~~l 318 (406)
.|..+..++.|. .++-.+.+|.+.++=.+.... +. ..+. ...-.+..++|+|+. ...|
T Consensus 105 eV~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 467788889888 666667777554443221110 00 0111 112246778999987 4457
Q ss_pred EEEeCCCcEEEEeCCCCC
Q 015484 319 ASSADDRRLMVWDLNRIG 336 (406)
Q Consensus 319 ~s~~~dg~i~iwd~~~~~ 336 (406)
..-+.|..|++||+....
T Consensus 184 ~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEEecCcEEEEEecCCcc
Confidence 778889999999998743
No 443
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.36 E-value=5.4 Score=41.75 Aligned_cols=152 Identities=13% Similarity=0.240 Sum_probs=88.8
Q ss_pred EecCCcEEEEECCCCcccccccccCCCeeEEEe-c-------CCCCcEEEEEeCCCcEEEEeCCCCCC--Cc------EE
Q 015484 234 AGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSF-N-------PYNEWVLATASSDTTVALFDMRKMTV--PL------HI 297 (406)
Q Consensus 234 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~-~-------~~~~~~l~~~~~dg~i~vwd~~~~~~--~~------~~ 297 (406)
.+.|..+.+|+..++.....+.+....|..+.. . |.=+++|+.++. -.|.++-+.-.+. .. ..
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~-~ei~ilgV~~~~~~~~~~~f~~~~~ 173 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATP-VEIVILGVSFDEFTGELSIFNTSFK 173 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEeccc-ceEEEEEEEeccccCccccccccee
Confidence 456889999999998777777666666666553 2 222334554443 3455553322111 01 11
Q ss_pred ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccc-------cc---cc-ccCCCCeeEEEecCCCCCeeeEE
Q 015484 298 LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ-------LE---LD-AEDGPPELLFSHGGHKAKISDFS 366 (406)
Q Consensus 298 ~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~-------~~---~~-~~~~~~~~~~~~~~h~~~v~~~~ 366 (406)
+......|++|....+|+ ++. +|.|| .+|.+.-..... +. .. ...-.+.+......+..+|..++
T Consensus 174 i~~dg~~V~~I~~t~nGR-IF~-~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ 249 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGR-IFF-AGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT 249 (1311)
T ss_pred eecCCceEEEEEeccCCc-EEE-eecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE
Confidence 222345789999888886 454 55566 555553211100 00 00 00001122222236778999999
Q ss_pred eCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 367 WNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 367 ~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
...... ++.+-++.|+|++|++..
T Consensus 250 ID~SR~-IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 250 IDNSRN-ILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eccccc-eeeeeccCceEEEEEccC
Confidence 987766 899999999999999987
No 444
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=90.29 E-value=12 Score=32.87 Aligned_cols=207 Identities=16% Similarity=0.199 Sum_probs=112.1
Q ss_pred CeeEEEecCCCCCeEEEecCCCeEEEEeCCCccC---Cceeeeeeeeec-----cCccEEEEEeeCC-----------CC
Q 015484 168 EGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQ---DKVIDAMHVYEA-----HESVVEDVSWHLK-----------NE 228 (406)
Q Consensus 168 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~-----~~~~i~~i~~~p~-----------~~ 228 (406)
.-+.|+++|.+. +-++....+...+||...... ...+ ...+.. .....+.+.|+.. ..
T Consensus 24 N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L--~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~ 100 (336)
T TIGR03118 24 NAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPL--VVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGP 100 (336)
T ss_pred ccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccce--EEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccc
Confidence 457899999887 777777788999999872211 1111 111111 2345777777742 12
Q ss_pred CEEEEEecCCcEEEEECCCCcc-----ccccc-ccCCCe-eEEEecC--CCCcEEEEEeCCCcEEEEeCCCCCCCc-EEe
Q 015484 229 NLFGSAGDDCQLMIWDLRTNQT-----QQRVK-AHEKEV-NYLSFNP--YNEWVLATASSDTTVALFDMRKMTVPL-HIL 298 (406)
Q Consensus 229 ~~l~~~~~dg~i~i~d~~~~~~-----~~~~~-~~~~~v-~~i~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~ 298 (406)
..|+.+++||+|.-|...-... ...+. .....| ..+++.. .+..+.++--..++|.|||-.-....+ ..+
T Consensus 101 a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F 180 (336)
T TIGR03118 101 SRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSF 180 (336)
T ss_pred eeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCc
Confidence 3366788999999998643322 11111 112333 3344443 345455665677899999865322111 001
Q ss_pred cCCC-----C--CeEE---------EEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEe--cCCCC
Q 015484 299 SSHT-----E--EVFQ---------VEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH--GGHKA 360 (406)
Q Consensus 299 ~~h~-----~--~v~~---------i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~ 360 (406)
.... . .|.. ..-.+.... =+.+..-|.|-+||+.- .++..+ .+.-.
T Consensus 181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d-~v~G~G~G~VdvFd~~G---------------~l~~r~as~g~LN 244 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRND-EVAGAGLGYVNVFTLNG---------------QLLRRVASSGRLN 244 (336)
T ss_pred cCCCCCCCCCCcceEEECCeEEEEEEecCCcccc-cccCCCcceEEEEcCCC---------------cEEEEeccCCccc
Confidence 1000 0 0111 111111111 12233346788888764 444433 34445
Q ss_pred CeeeEEeCC------CCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 361 KISDFSWNK------NDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 361 ~v~~~~~s~------~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
..+.|+..| .+. +|+.--.||.|..+|..++.+
T Consensus 245 aPWG~a~APa~FG~~sg~-lLVGNFGDG~InaFD~~sG~~ 283 (336)
T TIGR03118 245 APWGLAIAPESFGSLSGA-LLVGNFGDGTINAYDPQSGAQ 283 (336)
T ss_pred CCceeeeChhhhCCCCCC-eEEeecCCceeEEecCCCCce
Confidence 567777755 345 676666799999999987764
No 445
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=90.24 E-value=1.6 Score=24.94 Aligned_cols=29 Identities=3% Similarity=0.311 Sum_probs=22.6
Q ss_pred CCCeeeEEeCCCCCcEEEEEeCC--CcEEEE
Q 015484 359 KAKISDFSWNKNDPWVISSVADD--NTVQVW 387 (406)
Q Consensus 359 ~~~v~~~~~s~~~~~~l~s~~~d--g~i~iw 387 (406)
...-....|+|+|++++.++..+ |.-.||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34567889999999888888888 877777
No 446
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=89.91 E-value=1.7 Score=24.77 Aligned_cols=32 Identities=9% Similarity=0.293 Sum_probs=23.3
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEeCC--CcEEEE
Q 015484 299 SSHTEEVFQVEWDPNHETVLASSADD--RRLMVW 330 (406)
Q Consensus 299 ~~h~~~v~~i~~~p~~~~~l~s~~~d--g~i~iw 330 (406)
......-....|+|+|++++.++..+ |.-.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 33455678889999999888888877 777666
No 447
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.35 E-value=3.3 Score=34.89 Aligned_cols=62 Identities=11% Similarity=0.167 Sum_probs=44.4
Q ss_pred CCCEEEEEecCCcEEEEECCCCcccccc-------c-------ccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 227 NENLFGSAGDDCQLMIWDLRTNQTQQRV-------K-------AHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRK 290 (406)
Q Consensus 227 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~-------~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~ 290 (406)
.+.++++.+.+|.+++||+.+++.+..- . .....|..+.++.+|. -+++- .+|..+.|+..-
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~l-sng~~y~y~~~L 96 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-PIVTL-SNGDSYSYSPDL 96 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC-EEEEE-eCCCEEEecccc
Confidence 4677889999999999999988763221 2 3456778888887776 45544 457788887654
No 448
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=88.98 E-value=17 Score=32.79 Aligned_cols=212 Identities=13% Similarity=0.145 Sum_probs=109.2
Q ss_pred CCeeEEEecCCCCCeEEEecCCCe------EEEEeCCCcc-CCceeee--eeeeeccC--------ccEEEEEeeCCCCC
Q 015484 167 KEGYGLSWSPFKEGYLVSGSHDNK------ICLWDVSALA-QDKVIDA--MHVYEAHE--------SVVEDVSWHLKNEN 229 (406)
Q Consensus 167 ~~v~~l~~~~~~~~~l~s~~~dg~------i~iwd~~~~~-~~~~~~~--~~~~~~~~--------~~i~~i~~~p~~~~ 229 (406)
+...+|.+.+.+. .+++.+.+|. +..+++.... ....+.. ...+.... .-..+|++.+ ++.
T Consensus 20 GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g~ 97 (326)
T PF13449_consen 20 GGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DGS 97 (326)
T ss_pred CcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CCC
Confidence 5678899987555 6777777777 6656555411 1111111 11111111 1345788844 677
Q ss_pred EEEEEecC------CcEEEEECCCCcccccc---------------cccCCCeeEEEecCCCCcEEEEEeC-----CC--
Q 015484 230 LFGSAGDD------CQLMIWDLRTNQTQQRV---------------KAHEKEVNYLSFNPYNEWVLATASS-----DT-- 281 (406)
Q Consensus 230 ~l~~~~~d------g~i~i~d~~~~~~~~~~---------------~~~~~~v~~i~~~~~~~~~l~~~~~-----dg-- 281 (406)
++++.-.+ ..|..++.. ++....+ ...+...-+|+++|+|. .|+++.+ |+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~-~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGR-TLFAAMESPLKQDGPR 175 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCC-EEEEEECccccCCCcc
Confidence 77666566 678888876 5543332 11345677899999998 4444432 22
Q ss_pred c-------EEE--EeCCCCCCCcE----EecC-----CCCCeEEEEEcCCCCCEEEEE-e----CCCcEEEEeCCCCCc-
Q 015484 282 T-------VAL--FDMRKMTVPLH----ILSS-----HTEEVFQVEWDPNHETVLASS-A----DDRRLMVWDLNRIGD- 337 (406)
Q Consensus 282 ~-------i~v--wd~~~~~~~~~----~~~~-----h~~~v~~i~~~p~~~~~l~s~-~----~dg~i~iwd~~~~~~- 337 (406)
. +++ ||..+...+.. .+.. ....|..+.+-++++ +|+-= + ....++|+.+.-...
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLER~~~~~~~~~~ri~~v~l~~at 254 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLERDFSPGTGNYKRIYRVDLSDAT 254 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEEEccCCCCccceEEEEEEEccccc
Confidence 1 444 45444222222 2221 346789999999997 44432 1 234556655543211
Q ss_pred -cccc--cc---ccCCCCeeEEEecC---CCCCeeeEEeCC--CCCcEEEEEeCCCc
Q 015484 338 -EQLE--LD---AEDGPPELLFSHGG---HKAKISDFSWNK--NDPWVISSVADDNT 383 (406)
Q Consensus 338 -~~~~--~~---~~~~~~~~~~~~~~---h~~~v~~~~~s~--~~~~~l~s~~~dg~ 383 (406)
.... .. .......+++.+.. ....+-.|+|-| +|...|+..+.|+.
T Consensus 255 ~~~~~~~l~~~~~~~~~k~ll~d~~~~g~~~dn~EGma~~p~~~g~~~l~lvsDnNF 311 (326)
T PF13449_consen 255 DVPGIESLEGADIKPVKKELLFDLSPLGLPIDNFEGMAVGPRLDGRRTLYLVSDNNF 311 (326)
T ss_pred ccccccccccccccccccccccccccccCccCceeeEEEeeccCCCEEEEEEECCCC
Confidence 1100 00 01111223322222 145677888876 56555666665553
No 449
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.82 E-value=8.3 Score=40.50 Aligned_cols=139 Identities=16% Similarity=0.303 Sum_probs=78.8
Q ss_pred cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEe--------eCCCCCEEEEEecCCcEEEEECC----CCccc--
Q 015484 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSW--------HLKNENLFGSAGDDCQLMIWDLR----TNQTQ-- 251 (406)
Q Consensus 186 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~--------~p~~~~~l~~~~~dg~i~i~d~~----~~~~~-- 251 (406)
+.|..+.+|+.+++... ..+.+....|..+.. .|.=..+|+.++ --.|.++-+. ++..-
T Consensus 96 TiDn~L~lWny~~~~e~------~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~ilgV~~~~~~~~~~~f 168 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNEL------AEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVILGVSFDEFTGELSIF 168 (1311)
T ss_pred EeCCeEEEEEcCCCCcc------ccccchhhhheeeeeecCCCCcchhhhheeEEecc-cceEEEEEEEeccccCccccc
Confidence 35788999999985442 222333334444432 221123333333 3345554332 22110
Q ss_pred ---ccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCC----CC-------CC------------CcEEec-CCCCC
Q 015484 252 ---QRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMR----KM-------TV------------PLHILS-SHTEE 304 (406)
Q Consensus 252 ---~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~----~~-------~~------------~~~~~~-~h~~~ 304 (406)
..+......|+++....+|+ +++ ++.||. +|.+- .+ +. .+..+. .+..+
T Consensus 169 ~~~~~i~~dg~~V~~I~~t~nGR-IF~-~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dp 244 (1311)
T KOG1900|consen 169 NTSFKISVDGVSVNCITYTENGR-IFF-AGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDP 244 (1311)
T ss_pred ccceeeecCCceEEEEEeccCCc-EEE-eecCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCc
Confidence 12233456788999778887 555 455664 44331 10 00 022223 56779
Q ss_pred eEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCC
Q 015484 305 VFQVEWDPNHETVLASSADDRRLMVWDLNRIG 336 (406)
Q Consensus 305 v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 336 (406)
|..|+...... ++.+-+..|+|.+||+...+
T Consensus 245 I~qi~ID~SR~-IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 245 IRQITIDNSRN-ILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred ceeeEeccccc-eeeeeccCceEEEEEccCCC
Confidence 99999987764 89999999999999998744
No 450
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.47 E-value=9.2 Score=29.05 Aligned_cols=114 Identities=9% Similarity=0.103 Sum_probs=66.0
Q ss_pred EEecCCCCCeEEEecCCCeEEEEeCCCccCCc--eeeeeeeeeccCccEEEEEeeC----CCCCEEEEEecCCcEEEEEC
Q 015484 172 LSWSPFKEGYLVSGSHDNKICLWDVSALAQDK--VIDAMHVYEAHESVVEDVSWHL----KNENLFGSAGDDCQLMIWDL 245 (406)
Q Consensus 172 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~i~~i~~~p----~~~~~l~~~~~dg~i~i~d~ 245 (406)
-.|....+ .|++++.-|.|.|.+........ .-..+..+. -...|++++-.+ .....|+.|+ ...|..||+
T Consensus 4 GkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 4 GKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEeCCCce-eEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 35555556 78888889999999876543211 111222222 355677776443 2355665555 467999999
Q ss_pred CCCcccccccccCCCeeEEEecCC---CCcEEEEEeCCCcEEEEeCCC
Q 015484 246 RTNQTQQRVKAHEKEVNYLSFNPY---NEWVLATASSDTTVALFDMRK 290 (406)
Q Consensus 246 ~~~~~~~~~~~~~~~v~~i~~~~~---~~~~l~~~~~dg~i~vwd~~~ 290 (406)
.....+.... -...|+++.+-.- ...++++|+ +..|.-||...
T Consensus 81 ~~N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G 126 (136)
T PF14781_consen 81 ENNSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEG 126 (136)
T ss_pred ccCchhhhhh-CccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCC
Confidence 8776544333 3466777776321 121455444 45677666553
No 451
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=86.86 E-value=32 Score=33.50 Aligned_cols=55 Identities=11% Similarity=0.120 Sum_probs=35.7
Q ss_pred cEEEEECCCCcccccccccCCCe---------eEEEecCCCC--cEEEEEeCCCcEEEEeCCCCCC
Q 015484 239 QLMIWDLRTNQTQQRVKAHEKEV---------NYLSFNPYNE--WVLATASSDTTVALFDMRKMTV 293 (406)
Q Consensus 239 ~i~i~d~~~~~~~~~~~~~~~~v---------~~i~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~ 293 (406)
+|.-.|+++++..-.++.....+ .-+....+|+ ..++.+..+|.+++.|.++++.
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 67778899998765553322211 1122223443 4788999999999999988753
No 452
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=86.28 E-value=27 Score=32.12 Aligned_cols=152 Identities=11% Similarity=0.080 Sum_probs=76.1
Q ss_pred CceeEEEEcCCCCcEEEEEe-----------CCC-eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEE
Q 015484 116 GEVNRARCMPQKPNLVGTKT-----------SSC-EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLV 183 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~-----------~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 183 (406)
.....|+|.++| +++++-. ..+ .|.+++-.+... .......+...-....++++.+++ +++
T Consensus 14 ~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG----~~d~~~vfa~~l~~p~Gi~~~~~G--lyV 86 (367)
T TIGR02604 14 RNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDG----KYDKSNVFAEELSMVTGLAVAVGG--VYV 86 (367)
T ss_pred CCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCC----CcceeEEeecCCCCccceeEecCC--EEE
Confidence 567788999998 4444432 223 677776543211 111123333333455788888755 444
Q ss_pred EecCCCeEEEEeCCCccCCc-eee-eeeeeec----cCccEEEEEeeCCCCCEEEEEecC-------------------C
Q 015484 184 SGSHDNKICLWDVSALAQDK-VID-AMHVYEA----HESVVEDVSWHLKNENLFGSAGDD-------------------C 238 (406)
Q Consensus 184 s~~~dg~i~iwd~~~~~~~~-~~~-~~~~~~~----~~~~i~~i~~~p~~~~~l~~~~~d-------------------g 238 (406)
++.....++.|.+...... ..+ .+..+.. +......++|.| ++.+.++.+.. |
T Consensus 87 -~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g 164 (367)
T TIGR02604 87 -ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGG 164 (367)
T ss_pred -eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCc
Confidence 3344333343544321111 111 1122221 234577899998 56666554421 3
Q ss_pred cEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEe
Q 015484 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS 278 (406)
Q Consensus 239 ~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~ 278 (406)
.|.-++...++. ..+...-.....++|+|+|. ++++-.
T Consensus 165 ~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~-l~~tdn 202 (367)
T TIGR02604 165 GLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGD-VFFCDN 202 (367)
T ss_pred eEEEEecCCCeE-EEEecCcCCCccceECCCCC-EEEEcc
Confidence 455555554432 22221223346799999988 555533
No 453
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=86.22 E-value=9.1 Score=35.40 Aligned_cols=166 Identities=14% Similarity=0.086 Sum_probs=94.8
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceee-eCC-CCCee-EEEecCCCCCeEEEecCCCeE
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRL-KGH-DKEGY-GLSWSPFKEGYLVSGSHDNKI 191 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~h-~~~v~-~l~~~~~~~~~l~s~~~dg~i 191 (406)
...|..+-..|+++ .+..-+. .++.|+++.+..... +..... .+. ...|+ .+..-.-|. .|+.++.||-|
T Consensus 220 ~~~v~qllL~Pdg~-~LYv~~g-~~~~v~~L~~r~l~~----rkl~~dspg~~~~~Vte~l~lL~Gg~-SLLv~~~dG~v 292 (733)
T COG4590 220 FSDVSQLLLTPDGK-TLYVRTG-SELVVALLDKRSLQI----RKLVDDSPGDSRHQVTEQLYLLSGGF-SLLVVHEDGLV 292 (733)
T ss_pred ccchHhhEECCCCC-EEEEecC-CeEEEEeecccccch----hhhhhcCCCchHHHHHHHHHHHhCce-eEEEEcCCCce
Confidence 36777788899985 4443333 678889887743211 101111 110 01122 122222233 68888899998
Q ss_pred EEE-eCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCC
Q 015484 192 CLW-DVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 192 ~iw-d~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~ 270 (406)
.-| |++.... ..+..++.++-...++..+.-. ++.+-|++-...|.+..+.....+.+..-.. -....-++++|.+
T Consensus 293 sQWFdvr~~~~-p~l~h~R~f~l~pa~~~~l~pe-~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~-~~~~~~~~~Sp~~ 369 (733)
T COG4590 293 SQWFDVRRDGQ-PHLNHIRNFKLAPAEVQFLLPE-TNRKGFYSLYRNGTLQSFYSTSEKLLLFERA-YQAPQLVAMSPNQ 369 (733)
T ss_pred eeeeeeecCCC-CcceeeeccccCcccceeeccc-cccceEEEEcCCCceeeeecccCcceehhhh-hcCcceeeeCccc
Confidence 877 5555433 3343344444334455444433 3566788888999998887655544322222 2245668999999
Q ss_pred CcEEEEEeCCCcEEEEeCCCCC
Q 015484 271 EWVLATASSDTTVALFDMRKMT 292 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~ 292 (406)
. ++++- ..|.|+++.+.+..
T Consensus 370 ~-~Ll~e-~~gki~~~~l~Nr~ 389 (733)
T COG4590 370 A-YLLSE-DQGKIRLAQLENRN 389 (733)
T ss_pred c-hheee-cCCceEEEEecCCC
Confidence 8 56554 45789999887754
No 454
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=85.33 E-value=14 Score=33.54 Aligned_cols=107 Identities=13% Similarity=0.219 Sum_probs=54.2
Q ss_pred eeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeee-eeeeccCccEEEEEeeCC---CCCEEEEEecC-------
Q 015484 169 GYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAM-HVYEAHESVVEDVSWHLK---NENLFGSAGDD------- 237 (406)
Q Consensus 169 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~i~~i~~~p~---~~~~l~~~~~d------- 237 (406)
-++|+|.|++. +++ +...|.|++++ ..+.....+..+ ............++++|. ++.++++.+..
T Consensus 4 P~~~a~~pdG~-l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 4 PRSMAFLPDGR-LLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp EEEEEEETTSC-EEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred ceEEEEeCCCc-EEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 46899999976 555 56699999999 333221111111 112234567889999983 24444444422
Q ss_pred -CcEEEEECCCC--c-----cc-cccc---ccCCCeeEEEecCCCCcEEEEEe
Q 015484 238 -CQLMIWDLRTN--Q-----TQ-QRVK---AHEKEVNYLSFNPYNEWVLATAS 278 (406)
Q Consensus 238 -g~i~i~d~~~~--~-----~~-~~~~---~~~~~v~~i~~~~~~~~~l~~~~ 278 (406)
..|.-|..... . .+ ..+. ........|.|.|++..++.+|+
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 23333433322 1 01 1111 23455677999999974444443
No 455
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=85.12 E-value=48 Score=33.94 Aligned_cols=80 Identities=10% Similarity=0.036 Sum_probs=49.7
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccc----cccc--CCCCeeEEEecCCCCCeeeEEeCCCCCcEEE
Q 015484 303 EEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE----LDAE--DGPPELLFSHGGHKAKISDFSWNKNDPWVIS 376 (406)
Q Consensus 303 ~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~--~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~ 376 (406)
..|.+|.-..-+. +++.+-.||+|.++|-.+....... .... ......-+.+ .+...+..++|||++- .++
T Consensus 260 ~~V~si~~~~~~~-~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~f-p~~~~~~~vafSPt~c-~~v 336 (753)
T PF11635_consen 260 KRVVSITSPELDI-VVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHF-PCIQPPLHVAFSPTMC-SLV 336 (753)
T ss_pred CeEEEEEecccCc-EEEEEEcCCeEEEEecCcchhhcccccccCCcccccccccccccc-ccCCCCceEEECcccc-eEE
Confidence 3466777666664 6888999999999998886543332 1000 0001111122 1223566799999998 677
Q ss_pred EEeCCCcEE
Q 015484 377 SVADDNTVQ 385 (406)
Q Consensus 377 s~~~dg~i~ 385 (406)
.-..+|.+.
T Consensus 337 ~~~~~~~~~ 345 (753)
T PF11635_consen 337 QIDEDGKTK 345 (753)
T ss_pred EEecCCCce
Confidence 778888866
No 456
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=84.61 E-value=52 Score=33.85 Aligned_cols=168 Identities=7% Similarity=0.106 Sum_probs=97.9
Q ss_pred CCCCCeeEEEec---CC--CCCeEEEecCCCeEEEEeCCCccC------C---ceeeeeeeee---ccCccEEEEEeeCC
Q 015484 164 GHDKEGYGLSWS---PF--KEGYLVSGSHDNKICLWDVSALAQ------D---KVIDAMHVYE---AHESVVEDVSWHLK 226 (406)
Q Consensus 164 ~h~~~v~~l~~~---~~--~~~~l~s~~~dg~i~iwd~~~~~~------~---~~~~~~~~~~---~~~~~i~~i~~~p~ 226 (406)
.-..+|..|+|. .. ....++..-....+.|+...-.+. . -...++..+. ....+..+++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 456789999988 21 111344444566777777221111 0 0112222222 23457889999999
Q ss_pred CCCEEEEEecCCcEEEEECCCCcc----cccc-ccc----------CCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCC
Q 015484 227 NENLFGSAGDDCQLMIWDLRTNQT----QQRV-KAH----------EKEVNYLSFNPYNEWVLATASSDTTVALFDMRKM 291 (406)
Q Consensus 227 ~~~~l~~~~~dg~i~i~d~~~~~~----~~~~-~~~----------~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~ 291 (406)
+...||.....|...||++..... ...+ ... ...-..|.|.++.. .|++++. ..+.++|+.+.
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~-~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSN-RLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCC-EEEEEcC-CceEEEECCCC
Confidence 999999999999999999921111 1111 011 12234788887766 5666654 57999999876
Q ss_pred CCCc-EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 292 TVPL-HILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 292 ~~~~-~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
...- .........|..+.-+|.....+..-. ...|...++..
T Consensus 235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred CccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 5411 222334567899998888332222222 24677777766
No 457
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=84.42 E-value=35 Score=31.77 Aligned_cols=112 Identities=5% Similarity=0.022 Sum_probs=61.7
Q ss_pred cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC-C---CcEEecC--CCCCeEEEEEcCCCCCEEEEEeCCCcEEEE
Q 015484 257 HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT-V---PLHILSS--HTEEVFQVEWDPNHETVLASSADDRRLMVW 330 (406)
Q Consensus 257 ~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~---~~~~~~~--h~~~v~~i~~~p~~~~~l~s~~~dg~i~iw 330 (406)
....+.++.+.+++. +++++ ..|.+..=+ ..+. . ....... ....+..+.|.+++. ++.++..|.+...
T Consensus 279 ~~~~l~~v~~~~dg~-l~l~g-~~G~l~~S~-d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~--~~a~G~~G~v~~s 353 (398)
T PLN00033 279 SARRIQNMGWRADGG-LWLLT-RGGGLYVSK-GTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE--AWAAGGSGILLRS 353 (398)
T ss_pred CccceeeeeEcCCCC-EEEEe-CCceEEEec-CCCCcccccceeecccCCCCcceEEEEEcCCCc--EEEEECCCcEEEe
Confidence 355688999999888 55444 566654432 2211 0 1222221 123589999998875 5566678877665
Q ss_pred eCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEE
Q 015484 331 DLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387 (406)
Q Consensus 331 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw 387 (406)
.-. ++.- .....-..-....+.+.|.++++ .+++ +.+|.|--|
T Consensus 354 ~D~--G~tW----------~~~~~~~~~~~~ly~v~f~~~~~-g~~~-G~~G~il~~ 396 (398)
T PLN00033 354 TDG--GKSW----------KRDKGADNIAANLYSVKFFDDKK-GFVL-GNDGVLLRY 396 (398)
T ss_pred CCC--Ccce----------eEccccCCCCcceeEEEEcCCCc-eEEE-eCCcEEEEe
Confidence 322 2111 11111112234577899988776 3555 557876554
No 458
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=83.80 E-value=30 Score=30.44 Aligned_cols=116 Identities=13% Similarity=0.181 Sum_probs=65.1
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe------cCCcEEEEECCCCcccccccc-----c
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG------DDCQLMIWDLRTNQTQQRVKA-----H 257 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~-----~ 257 (406)
..|++||....+-.. . -.+-.+.|+++.|.. +..++++|. ....+..||..+... ..+.. -
T Consensus 16 ~~lC~yd~~~~qW~~----~--g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~i 87 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSS----P--GNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSI 87 (281)
T ss_pred CEEEEEECCCCEeec----C--CCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccC
Confidence 469999988743211 1 112457899999984 567776664 456788899886643 22222 2
Q ss_pred CCCeeEEEecC-CCCcEEEEEe-CCC--cEEEEeCCCCCCCcEEecCCCCCeEEEEEcC
Q 015484 258 EKEVNYLSFNP-YNEWVLATAS-SDT--TVALFDMRKMTVPLHILSSHTEEVFQVEWDP 312 (406)
Q Consensus 258 ~~~v~~i~~~~-~~~~~l~~~~-~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p 312 (406)
.++|..+.+.. ++..+.+.|. .+| .|..||-.+....-.........|..+.+-|
T Consensus 88 pgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 88 PGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred CCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence 46788887743 3333554544 333 5777776554431111222244566665543
No 459
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=83.36 E-value=3.6 Score=23.66 Aligned_cols=32 Identities=13% Similarity=0.191 Sum_probs=22.8
Q ss_pred CCCCCEEEEEecCCcEEEEECCCCcccccccc
Q 015484 225 LKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA 256 (406)
Q Consensus 225 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 256 (406)
|++..++++...++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 33455666666789999999988776666543
No 460
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=82.98 E-value=49 Score=33.29 Aligned_cols=71 Identities=20% Similarity=0.370 Sum_probs=40.9
Q ss_pred eeEEEecCCCCcEEEEEeCCC-----cEEEEeCCCCCCC-cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 261 VNYLSFNPYNEWVLATASSDT-----TVALFDMRKMTVP-LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 261 v~~i~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~-~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
-..++|-|+|. .+++-..|| .|.++.......- ...-.+-...+..++|+-... +...+..+.+.+|-..+
T Consensus 249 e~~LSWkpqgS-~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~--vlav~~~n~~~lwttkN 325 (1243)
T COG5290 249 EHQLSWKPQGS-KYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLST--VLAVAEGNLLKLWTTKN 325 (1243)
T ss_pred hhccccccCCc-eeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHH--HHHHhhcceEEEEEccc
Confidence 34589999999 888877555 3555543322110 001112234466677876653 33444567899998765
No 461
>PRK13684 Ycf48-like protein; Provisional
Probab=82.89 E-value=37 Score=30.82 Aligned_cols=155 Identities=7% Similarity=0.045 Sum_probs=79.8
Q ss_pred CccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC
Q 015484 215 ESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV 293 (406)
Q Consensus 215 ~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 293 (406)
...+.++.+.| ++.++ ..+..|.+..-.-..++..... ......++++.+.++++ +++++ ..|.+.+=....+..
T Consensus 172 ~g~~~~i~~~~-~g~~v-~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYV-AVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEE-EEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEEe-cCCEEEEccCCCCCc
Confidence 45688889887 44444 5555665543211122222222 23456789999999888 55554 457654322222211
Q ss_pred CcEEecC----CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCC
Q 015484 294 PLHILSS----HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNK 369 (406)
Q Consensus 294 ~~~~~~~----h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 369 (406)
-..... ....+..+.+.|++. +..++.+|.+.. .... +... +.+....+-....+.+.|..
T Consensus 248 -W~~~~~~~~~~~~~l~~v~~~~~~~--~~~~G~~G~v~~-S~d~-G~tW----------~~~~~~~~~~~~~~~~~~~~ 312 (334)
T PRK13684 248 -WSKPIIPEITNGYGYLDLAYRTPGE--IWAGGGNGTLLV-SKDG-GKTW----------EKDPVGEEVPSNFYKIVFLD 312 (334)
T ss_pred -cccccCCccccccceeeEEEcCCCC--EEEEcCCCeEEE-eCCC-CCCC----------eECCcCCCCCcceEEEEEeC
Confidence 111111 123578899999775 445556776643 2221 1111 11100011123467777776
Q ss_pred CCCcEEEEEeCCCcEEEEeCC
Q 015484 370 NDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 370 ~~~~~l~s~~~dg~i~iw~~~ 390 (406)
++. .+++ +..|.|--|+-.
T Consensus 313 ~~~-~~~~-G~~G~il~~~~~ 331 (334)
T PRK13684 313 PEK-GFVL-GQRGVLLRYVGS 331 (334)
T ss_pred CCc-eEEE-CCCceEEEecCC
Confidence 666 4554 567888777643
No 462
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=82.85 E-value=13 Score=34.46 Aligned_cols=159 Identities=15% Similarity=0.135 Sum_probs=84.8
Q ss_pred cCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccc-ccc-cccC----CCee-EEEecCCCCcEEEEEeCCCcEEEE
Q 015484 214 HESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ-QRV-KAHE----KEVN-YLSFNPYNEWVLATASSDTTVALF 286 (406)
Q Consensus 214 ~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~-~~~~----~~v~-~i~~~~~~~~~l~~~~~dg~i~vw 286 (406)
....+..+-..| +++.+..-+. ..+.++++...... ..+ .... ..|+ ++..-. |..-+++++.||.|.-|
T Consensus 219 ~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQW 295 (733)
T COG4590 219 PFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQW 295 (733)
T ss_pred CccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeee
Confidence 345677777888 4555544433 57888887654321 112 1111 1122 111112 33367888899988766
Q ss_pred -eCCCCCCC----cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCC
Q 015484 287 -DMRKMTVP----LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAK 361 (406)
Q Consensus 287 -d~~~~~~~----~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 361 (406)
|.|....| ++.++....++.-+.=.. .+.-+++-...|++.++.-... +.+++.. -...
T Consensus 296 Fdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~-------------~~lL~~~--~~~~ 359 (733)
T COG4590 296 FDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSE-------------KLLLFER--AYQA 359 (733)
T ss_pred eeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccC-------------cceehhh--hhcC
Confidence 66654432 111222222333222122 2234677777888777654431 1222221 1224
Q ss_pred eeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 362 ISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 362 v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
+.-+++||.+.+ +++ -..|.++++.+++..
T Consensus 360 ~~~~~~Sp~~~~-Ll~-e~~gki~~~~l~Nr~ 389 (733)
T COG4590 360 PQLVAMSPNQAY-LLS-EDQGKIRLAQLENRN 389 (733)
T ss_pred cceeeeCcccch-hee-ecCCceEEEEecCCC
Confidence 667899999986 444 346889999998764
No 463
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=82.28 E-value=35 Score=30.16 Aligned_cols=177 Identities=11% Similarity=0.138 Sum_probs=86.6
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCC-----CEEEEEecCCcEEEEECCCCcccccccc--------
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNE-----NLFGSAGDDCQLMIWDLRTNQTQQRVKA-------- 256 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------- 256 (406)
.|.+||+.+.+..+.+..-.......+.++++.+....+ ..+++=...+.|.++|+.+++..+.+..
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 566667766543332222111122356788888876332 2333444556899999998765433211
Q ss_pred -----------cCCCeeEEEecC---CCCcEEEEEeCCCcEEEEeC-----CCCCC--------CcEEecCCCCCeEEEE
Q 015484 257 -----------HEKEVNYLSFNP---YNEWVLATASSDTTVALFDM-----RKMTV--------PLHILSSHTEEVFQVE 309 (406)
Q Consensus 257 -----------~~~~v~~i~~~~---~~~~~l~~~~~dg~i~vwd~-----~~~~~--------~~~~~~~h~~~v~~i~ 309 (406)
....+..++.+| +++ .|.-+.-.+ -++|-+ ++... .+..+-........++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r-~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~ 192 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGR-WLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMA 192 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS--EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCcc-EEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEE
Confidence 112255566654 444 333333222 122222 22111 1122211124567788
Q ss_pred EcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCC--CCCcEEEEE
Q 015484 310 WDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNK--NDPWVISSV 378 (406)
Q Consensus 310 ~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~~l~s~ 378 (406)
++++|. ++++--..+.|..|+....-... ....+..-...-..+.++.+.+ +|. +.+.+
T Consensus 193 ~D~~G~-ly~~~~~~~aI~~w~~~~~~~~~--------~~~~l~~d~~~l~~pd~~~i~~~~~g~-L~v~s 253 (287)
T PF03022_consen 193 IDPNGN-LYFTDVEQNAIGCWDPDGPYTPE--------NFEILAQDPRTLQWPDGLKIDPEGDGY-LWVLS 253 (287)
T ss_dssp EETTTE-EEEEECCCTEEEEEETTTSB-GC--------CEEEEEE-CC-GSSEEEEEE-T--TS--EEEEE
T ss_pred ECCCCc-EEEecCCCCeEEEEeCCCCcCcc--------chheeEEcCceeeccceeeeccccCce-EEEEE
Confidence 889885 77788889999999987522111 1123332222245778899998 776 44443
No 464
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=82.21 E-value=5.3 Score=39.07 Aligned_cols=74 Identities=19% Similarity=0.229 Sum_probs=41.5
Q ss_pred CeEEEecCCCeEEEEeCCCcc-CCceeee-----------eeee--------eccCccEEEEEeeC---CCCCEEEEEec
Q 015484 180 GYLVSGSHDNKICLWDVSALA-QDKVIDA-----------MHVY--------EAHESVVEDVSWHL---KNENLFGSAGD 236 (406)
Q Consensus 180 ~~l~s~~~dg~i~iwd~~~~~-~~~~~~~-----------~~~~--------~~~~~~i~~i~~~p---~~~~~l~~~~~ 236 (406)
..++.+..||.+......... ....+.. +..+ ......+..++.++ .+..++++.+.
T Consensus 159 ~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~ 238 (547)
T PF11715_consen 159 ANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSR 238 (547)
T ss_dssp SBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEET
T ss_pred CEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeC
Confidence 378888899998888776511 1011100 0000 01123344455543 25788899999
Q ss_pred CCcEEEEECCCCccccc
Q 015484 237 DCQLMIWDLRTNQTQQR 253 (406)
Q Consensus 237 dg~i~i~d~~~~~~~~~ 253 (406)
|+.+|+||+.+++++..
T Consensus 239 D~~LRiW~l~t~~~~~~ 255 (547)
T PF11715_consen 239 DHTLRIWSLETGQCLAT 255 (547)
T ss_dssp TSEEEEEETTTTCEEEE
T ss_pred CCeEEEEECCCCeEEEE
Confidence 99999999999988443
No 465
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=81.80 E-value=27 Score=28.95 Aligned_cols=130 Identities=14% Similarity=0.252 Sum_probs=68.3
Q ss_pred EEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeee
Q 015484 133 TKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYE 212 (406)
Q Consensus 133 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 212 (406)
-.-.+|.-.++|..+. +....+. ..+..++++- ++. .|+.++...++..-|..+-.....+. .+..
T Consensus 106 LTw~egvaf~~d~~t~--------~~lg~~~-y~GeGWgLt~--d~~-~LimsdGsatL~frdP~tfa~~~~v~--VT~~ 171 (262)
T COG3823 106 LTWKEGVAFKYDADTL--------EELGRFS-YEGEGWGLTS--DDK-NLIMSDGSATLQFRDPKTFAELDTVQ--VTDD 171 (262)
T ss_pred EEeccceeEEEChHHh--------hhhcccc-cCCcceeeec--CCc-ceEeeCCceEEEecCHHHhhhcceEE--EEEC
Confidence 3345777788887762 2222221 2234455543 455 45555555667776766544333221 1111
Q ss_pred c-cCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc------------cccCCCeeEEEecCCCCcEEEEEe
Q 015484 213 A-HESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV------------KAHEKEVNYLSFNPYNEWVLATAS 278 (406)
Q Consensus 213 ~-~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------------~~~~~~v~~i~~~~~~~~~l~~~~ 278 (406)
+ .-..++.+.|- ++.+.|-.-.+..|...|..+|+.+..+ ..+..-.+.|++.|++..++++|-
T Consensus 172 g~pv~~LNELE~V--dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 172 GVPVSKLNELEWV--DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred Ceecccccceeee--ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 1 11234555554 3555555544455555566666543322 224456788999998875777663
No 466
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=81.77 E-value=43 Score=30.90 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=15.3
Q ss_pred CCCEEEEEecCC-----------cEEEEECCCCc
Q 015484 227 NENLFGSAGDDC-----------QLMIWDLRTNQ 249 (406)
Q Consensus 227 ~~~~l~~~~~dg-----------~i~i~d~~~~~ 249 (406)
++.+++.|+... .+..||..+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~ 117 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS 117 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCE
Confidence 567777777532 47788887654
No 467
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=81.44 E-value=38 Score=29.97 Aligned_cols=32 Identities=9% Similarity=0.285 Sum_probs=25.8
Q ss_pred CCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 360 AKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 360 ~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.....++.+++|. ++.+--..+.|..|+..+.
T Consensus 186 ~~s~g~~~D~~G~-ly~~~~~~~aI~~w~~~~~ 217 (287)
T PF03022_consen 186 SQSDGMAIDPNGN-LYFTDVEQNAIGCWDPDGP 217 (287)
T ss_dssp -SECEEEEETTTE-EEEEECCCTEEEEEETTTS
T ss_pred CCCceEEECCCCc-EEEecCCCCeEEEEeCCCC
Confidence 3456788889888 7888888999999999873
No 468
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=81.44 E-value=70 Score=33.07 Aligned_cols=147 Identities=13% Similarity=0.053 Sum_probs=77.4
Q ss_pred eEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCC--CCC---EEEEEecCCcEEEEEC-CCCcccccc
Q 015484 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLK--NEN---LFGSAGDDCQLMIWDL-RTNQTQQRV 254 (406)
Q Consensus 181 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~--~~~---~l~~~~~dg~i~i~d~-~~~~~~~~~ 254 (406)
.++.++.++.+...++....... ..-......|.|+.++|. +++ +++.|..+..+.+.-. .....+...
T Consensus 501 qVvvA~~~~~l~y~~i~~~~l~e-----~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~ 575 (1096)
T KOG1897|consen 501 QVVVAGGGLALFYLEIEDGGLRE-----VSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHE 575 (1096)
T ss_pred EEEEecCccEEEEEEeeccceee-----eeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeee
Confidence 66677677777777776643110 111123567899988874 344 7888876665554332 222221111
Q ss_pred -ccc---CCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCc---EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcE
Q 015484 255 -KAH---EKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPL---HILSSHTEEVFQVEWDPNHETVLASSADDRRL 327 (406)
Q Consensus 255 -~~~---~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i 327 (406)
... ...|.-..+-.+.. +|.++..||.+.-|-+....-.. +.......++.=-.|+..+++.+.+++ |.-.
T Consensus 576 ~l~~~~iPRSIl~~~~e~d~~-yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~s-drP~ 653 (1096)
T KOG1897|consen 576 QLSGEIIPRSILLTTFEGDIH-YLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALS-DRPT 653 (1096)
T ss_pred ccCCCccchheeeEEeeccce-EEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeC-CCCE
Confidence 111 12232333433344 89999999988766554332111 111223445555566666655444444 6666
Q ss_pred EEEeCCC
Q 015484 328 MVWDLNR 334 (406)
Q Consensus 328 ~iwd~~~ 334 (406)
.+|.-+.
T Consensus 654 viY~~n~ 660 (1096)
T KOG1897|consen 654 VIYSSNG 660 (1096)
T ss_pred EEEecCC
Confidence 6666543
No 469
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=81.26 E-value=41 Score=30.25 Aligned_cols=63 Identities=13% Similarity=0.199 Sum_probs=33.7
Q ss_pred CCCEEEEEec-----CCcEEEEECCCCcccc--cccccCCCeeEEEecCCCCcEEEEEeCCC----cEEEEeCCCC
Q 015484 227 NENLFGSAGD-----DCQLMIWDLRTNQTQQ--RVKAHEKEVNYLSFNPYNEWVLATASSDT----TVALFDMRKM 291 (406)
Q Consensus 227 ~~~~l~~~~~-----dg~i~i~d~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~l~~~~~dg----~i~vwd~~~~ 291 (406)
++.+++.|+. ...+..||+.+.+-.. .+.... .....+..-.+. +.+.|+.++ .+.+||+.+.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~-r~~~~~~~~~~~-iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP-RVQPVCVKLQNE-LYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC-CCcceEEEECCE-EEEEcCCCCccccceEEEecCCC
Confidence 4677777774 2358888988765322 121111 111121222344 777777654 3568888764
No 470
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=80.86 E-value=37 Score=29.49 Aligned_cols=200 Identities=8% Similarity=0.036 Sum_probs=103.1
Q ss_pred CeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCC
Q 015484 168 EGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT 247 (406)
Q Consensus 168 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~ 247 (406)
.-..++-.++|. .-+++...|.|--.|..+++.. ..--+....-..|..-|+++..| +-+.. .|.-.|-++
T Consensus 63 ap~dvapapdG~-VWft~qg~gaiGhLdP~tGev~------~ypLg~Ga~Phgiv~gpdg~~Wi-td~~~-aI~R~dpkt 133 (353)
T COG4257 63 APFDVAPAPDGA-VWFTAQGTGAIGHLDPATGEVE------TYPLGSGASPHGIVVGPDGSAWI-TDTGL-AIGRLDPKT 133 (353)
T ss_pred CccccccCCCCc-eEEecCccccceecCCCCCceE------EEecCCCCCCceEEECCCCCeeE-ecCcc-eeEEecCcc
Confidence 345677778777 7777777777777777776431 11112334455667777544444 32222 455556555
Q ss_pred Ccccc---cccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCC-CCCeEEEEEcCCCCCEEEEEeC
Q 015484 248 NQTQQ---RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSH-TEEVFQVEWDPNHETVLASSAD 323 (406)
Q Consensus 248 ~~~~~---~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h-~~~v~~i~~~p~~~~~l~s~~~ 323 (406)
.+... ..+..........|.+.|. +-+++.. |.---.|... ..+..+... ...-+.|+-.|+|+ +-++.-.
T Consensus 134 ~evt~f~lp~~~a~~nlet~vfD~~G~-lWFt~q~-G~yGrLdPa~--~~i~vfpaPqG~gpyGi~atpdGs-vwyasla 208 (353)
T COG4257 134 LEVTRFPLPLEHADANLETAVFDPWGN-LWFTGQI-GAYGRLDPAR--NVISVFPAPQGGGPYGICATPDGS-VWYASLA 208 (353)
T ss_pred cceEEeecccccCCCcccceeeCCCcc-EEEeecc-ccceecCccc--CceeeeccCCCCCCcceEECCCCc-EEEEecc
Confidence 44311 1133355677889999998 7777652 2111111111 112333222 23467788899997 4555445
Q ss_pred CCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 324 DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 324 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
+..|-..|...... +.+-...+....-..+--+|.|+ +-+|....+.++-+|..+..+
T Consensus 209 gnaiaridp~~~~a------------ev~p~P~~~~~gsRriwsdpig~-~wittwg~g~l~rfdPs~~sW 266 (353)
T COG4257 209 GNAIARIDPFAGHA------------EVVPQPNALKAGSRRIWSDPIGR-AWITTWGTGSLHRFDPSVTSW 266 (353)
T ss_pred ccceEEcccccCCc------------ceecCCCcccccccccccCccCc-EEEeccCCceeeEeCcccccc
Confidence 55666656544221 11111111111223333455555 455555556666666655543
No 471
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=80.71 E-value=53 Score=31.18 Aligned_cols=55 Identities=11% Similarity=0.127 Sum_probs=36.5
Q ss_pred CccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc--cccc----c-ccCCCeeEEEecCCC
Q 015484 215 ESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT--QQRV----K-AHEKEVNYLSFNPYN 270 (406)
Q Consensus 215 ~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~----~-~~~~~v~~i~~~~~~ 270 (406)
-...+.|+|.| ++++|++--..|.|++++..++.. +..+ . ........|+++|+-
T Consensus 29 L~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 34578899999 567776655469999998655432 1111 1 135678899999874
No 472
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.90 E-value=69 Score=32.04 Aligned_cols=161 Identities=8% Similarity=0.016 Sum_probs=77.1
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeE-EEE
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKI-CLW 194 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i-~iw 194 (406)
+.+-.+.|+.+. -|++...+|+++||++........ ..........|..+.+..+|- .+++. +|.+ .+-
T Consensus 84 ~~lI~mgWs~~e--eLI~v~k~g~v~Vy~~~ge~ie~~-----svg~e~~~~~I~ec~~f~~GV-avlt~--~g~v~~i~ 153 (829)
T KOG2280|consen 84 GELIGMGWSDDE--ELICVQKDGTVHVYGLLGEFIESN-----SVGFESQMSDIVECRFFHNGV-AVLTV--SGQVILIN 153 (829)
T ss_pred CCeeeecccCCc--eEEEEeccceEEEeecchhhhccc-----ccccccccCceeEEEEecCce-EEEec--CCcEEEEc
Confidence 488899999877 366778999999999976432210 011112223455555554343 33333 3444 333
Q ss_pred eCCCccCCceeeeeeeeeccCccEEEEEeeCCC--CCEEEEEe-cCCcEEEEECCCCc-ccccccccCCCeeEEEecCCC
Q 015484 195 DVSALAQDKVIDAMHVYEAHESVVEDVSWHLKN--ENLFGSAG-DDCQLMIWDLRTNQ-TQQRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 195 d~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~--~~~l~~~~-~dg~i~i~d~~~~~-~~~~~~~~~~~v~~i~~~~~~ 270 (406)
+...... +.++. ......+-.|-...+.+ ...++-.. ..+ ..++-..... ....+....+.+..+..+|+.
T Consensus 154 ~~~~~~~-~~~~d---iP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~ 228 (829)
T KOG2280|consen 154 GVEEPKL-RKMPD---IPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNR 228 (829)
T ss_pred CCCcchh-hhCCC---CCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCc
Confidence 3333211 11111 01111111221111111 11121111 111 1112222111 122223234667888999998
Q ss_pred CcEEEEEeCCCcEEEEeCCCCC
Q 015484 271 EWVLATASSDTTVALFDMRKMT 292 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~ 292 (406)
+ +|+--..+|.|.+-+....+
T Consensus 229 ~-~laLyt~~G~i~~vs~D~~~ 249 (829)
T KOG2280|consen 229 R-FLALYTETGKIWVVSIDLSQ 249 (829)
T ss_pred c-eEEEEecCCcEEEEecchhh
Confidence 8 88888899999998776543
No 473
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=79.28 E-value=62 Score=32.35 Aligned_cols=94 Identities=19% Similarity=0.268 Sum_probs=55.3
Q ss_pred CCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEEC
Q 015484 166 DKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDL 245 (406)
Q Consensus 166 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~ 245 (406)
..-++++.-+|.+. .++.+..||+|++|+.......+.. ....+-..+.|. +.-+++++.|..+.-|.-
T Consensus 14 ~e~~~aiqshp~~~-s~v~~~~d~si~lfn~~~r~qski~-------~~~~p~~nlv~t---nhgl~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQ-SFVLAHQDGSIILFNFIPRRQSKIC-------EEAKPKENLVFT---NHGLVTATSDRRALAWKE 82 (1636)
T ss_pred cceeeeeeecCCCc-eEEEEecCCcEEEEeecccchhhhh-------hhcCCccceeee---ccceEEEeccchhheeec
Confidence 34567888888777 8999999999999998664332111 112233445554 233556777777777763
Q ss_pred CCCccccccc---ccCCCeeEEEecCCCC
Q 015484 246 RTNQTQQRVK---AHEKEVNYLSFNPYNE 271 (406)
Q Consensus 246 ~~~~~~~~~~---~~~~~v~~i~~~~~~~ 271 (406)
.|-..+.+. .......++...|..+
T Consensus 83 -dgvvqqqfdyndqsekefss~~cdptaq 110 (1636)
T KOG3616|consen 83 -DGVVQQQFDYNDQSEKEFSSILCDPTAQ 110 (1636)
T ss_pred -cCcchhhccccchhhhhccceecCchhh
Confidence 343333331 1233445566666554
No 474
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=79.24 E-value=80 Score=32.41 Aligned_cols=68 Identities=21% Similarity=0.190 Sum_probs=45.9
Q ss_pred CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEE------------ec------CCCCCeEEEEEcCCCCCEEEE
Q 015484 259 KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHI------------LS------SHTEEVFQVEWDPNHETVLAS 320 (406)
Q Consensus 259 ~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~------------~~------~h~~~v~~i~~~p~~~~~l~s 320 (406)
..|.++.....+. +++....||+|.++|..+.+..... +. .+-..+..++|||.+- .++.
T Consensus 260 ~~V~si~~~~~~~-~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c-~~v~ 337 (753)
T PF11635_consen 260 KRVVSITSPELDI-VVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMC-SLVQ 337 (753)
T ss_pred CeEEEEEecccCc-EEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccc-eEEE
Confidence 4466776666666 8899999999999998876431111 00 0112345688999986 5777
Q ss_pred EeCCCcEE
Q 015484 321 SADDRRLM 328 (406)
Q Consensus 321 ~~~dg~i~ 328 (406)
-..+|.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 88888866
No 475
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=79.07 E-value=8.1 Score=22.10 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=20.5
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec
Q 015484 268 PYNEWVLATASSDTTVALFDMRKMTVPLHILS 299 (406)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 299 (406)
|+++.++++...++.|.++|..+... +..+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~-~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKV-IATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeE-EEEEE
Confidence 46665666666688999999976543 44443
No 476
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=78.46 E-value=69 Score=31.23 Aligned_cols=109 Identities=13% Similarity=0.047 Sum_probs=58.2
Q ss_pred eEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCc----c-EEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccc
Q 015484 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHES----V-VEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK 255 (406)
Q Consensus 181 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~-i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 255 (406)
.|+.++.++.|.-.|..+++................ . -..++.. +..++.++.|+.|..+|.++++.+-...
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~---~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY---DGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE---CCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 677777788888888888765433221100000000 0 0112232 2345567889999999999998865543
Q ss_pred ccCCC-eeEEEecC--CCCcEEEEEeC------CCcEEEEeCCCCCC
Q 015484 256 AHEKE-VNYLSFNP--YNEWVLATASS------DTTVALFDMRKMTV 293 (406)
Q Consensus 256 ~~~~~-v~~i~~~~--~~~~~l~~~~~------dg~i~vwd~~~~~~ 293 (406)
..... -..+.-+| .+. .++++.. +|.|.-+|.++++.
T Consensus 148 ~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~ 193 (527)
T TIGR03075 148 NGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKL 193 (527)
T ss_pred cccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCce
Confidence 21100 00111112 123 3444432 67899999888764
No 477
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=76.76 E-value=96 Score=31.96 Aligned_cols=177 Identities=11% Similarity=0.169 Sum_probs=103.1
Q ss_pred EeecCCceeEEEEc---C--C-CCcEEEEEeCCCeEEEEeCCCccc------cc-cCCCCCceeeeCC---CCCeeEEEe
Q 015484 111 KIRVDGEVNRARCM---P--Q-KPNLVGTKTSSCEVYVFDCAKQAE------KQ-QDDCDPDLRLKGH---DKEGYGLSW 174 (406)
Q Consensus 111 ~~~h~~~v~~i~~~---p--~-~~~~l~~~~~dg~i~iw~~~~~~~------~~-~~~~~~~~~~~~h---~~~v~~l~~ 174 (406)
.+.-..+|..|+|. . + ...+|++-. ...+.|+...-... .. .-...++..+..+ ..+...++|
T Consensus 75 ~i~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~F 153 (765)
T PF10214_consen 75 SIDDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAF 153 (765)
T ss_pred EcCCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEe
Confidence 33567899999998 3 1 224666544 45677887322211 00 0123344444432 245678999
Q ss_pred cCCCCCeEEEecCCCeEEEEeCCCccCC--ceeeeeeeeec-------cCccEEEEEeeCCCCCEEEEEecCCcEEEEEC
Q 015484 175 SPFKEGYLVSGSHDNKICLWDVSALAQD--KVIDAMHVYEA-------HESVVEDVSWHLKNENLFGSAGDDCQLMIWDL 245 (406)
Q Consensus 175 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~-------~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~ 245 (406)
+|.....||.....|...||++...... ..+.......+ .......|.|.+. .+.|+.++ ...+.++|+
T Consensus 154 nP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~-~~~lLv~~-r~~l~~~d~ 231 (765)
T PF10214_consen 154 NPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSD-SNRLLVCN-RSKLMLIDF 231 (765)
T ss_pred ccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCC-CCEEEEEc-CCceEEEEC
Confidence 9987779999999999999999322111 11111100001 1133447888764 44444444 457899999
Q ss_pred CCCcccccc--cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCC
Q 015484 246 RTNQTQQRV--KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKM 291 (406)
Q Consensus 246 ~~~~~~~~~--~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~ 291 (406)
++......+ ......|..+.-+|....+++.-+. ..|...|+...
T Consensus 232 ~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs-~eiiw~~~~~~ 278 (765)
T PF10214_consen 232 ESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS-KEIIWLDVKSS 278 (765)
T ss_pred CCCCccchhccCCChhheeeEEecCCccceEEEEec-CeEEEEEccCC
Confidence 987663312 3345678888888874434444433 56888888773
No 478
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=76.53 E-value=53 Score=28.89 Aligned_cols=94 Identities=17% Similarity=0.216 Sum_probs=57.7
Q ss_pred CcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEe------CCCcEEEEeCCCCCCCcEEecC-----CCCCeE
Q 015484 238 CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS------SDTTVALFDMRKMTVPLHILSS-----HTEEVF 306 (406)
Q Consensus 238 g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~~-----h~~~v~ 306 (406)
..|++||..+.+-...-..-.+.|+.+.|..+.+ +++.|. ....+..||+.+.. ...+.. -.++|.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~-Llv~G~ft~~~~~~~~la~yd~~~~~--w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQ-LLVGGNFTLNGTNSSNLATYDFKNQT--WSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCE-EEEEEeeEECCCCceeEEEEecCCCe--eeecCCcccccCCCcEE
Confidence 3589999887665444444667899999986555 777665 34578889988643 333333 236788
Q ss_pred EEEEcCC-CCCEEEEEe-CCC--cEEEEeCCC
Q 015484 307 QVEWDPN-HETVLASSA-DDR--RLMVWDLNR 334 (406)
Q Consensus 307 ~i~~~p~-~~~~l~s~~-~dg--~i~iwd~~~ 334 (406)
.+.+... ...+.++|. .+| .|..||-..
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence 8877433 333454444 333 356665443
No 479
>PLN02193 nitrile-specifier protein
Probab=76.24 E-value=75 Score=30.46 Aligned_cols=63 Identities=11% Similarity=0.069 Sum_probs=33.2
Q ss_pred CCCEEEEEecCC-----cEEEEECCCCcccccc-----cccCCCeeEEEecCCCCcEEEEEeCC----CcEEEEeCCCCC
Q 015484 227 NENLFGSAGDDC-----QLMIWDLRTNQTQQRV-----KAHEKEVNYLSFNPYNEWVLATASSD----TTVALFDMRKMT 292 (406)
Q Consensus 227 ~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~-----~~~~~~v~~i~~~~~~~~~l~~~~~d----g~i~vwd~~~~~ 292 (406)
++++++.|+.++ .+..||+.+.+-...- .........+.+ ++. +++.++.+ ..+.+||+.+..
T Consensus 278 ~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~--~gk-iyviGG~~g~~~~dv~~yD~~t~~ 354 (470)
T PLN02193 278 EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV--QGK-VWVVYGFNGCEVDDVHYYDPVQDK 354 (470)
T ss_pred CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE--CCc-EEEEECCCCCccCceEEEECCCCE
Confidence 467777777543 3667887765432110 001111111222 355 66666655 358899987643
No 480
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=76.20 E-value=61 Score=30.48 Aligned_cols=31 Identities=19% Similarity=0.499 Sum_probs=24.5
Q ss_pred CCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 360 AKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 360 ~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
..|.+++..+..+ ++++...+|.|++|++..
T Consensus 190 ~~I~~v~~d~~r~-~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRR-LLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTT-EEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcC-EEEEEeCCCcEEEEEEeC
Confidence 3499999998887 799999999999999975
No 481
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=76.09 E-value=54 Score=28.80 Aligned_cols=165 Identities=16% Similarity=0.123 Sum_probs=95.2
Q ss_pred EEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC
Q 015484 108 IAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 108 ~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
..-++.-.+-+..++++.+. ...+..+.-++|.|+.+.... ....+..-.+-.+++..+ |+ +...+..
T Consensus 79 l~~~i~~~~l~~Dv~vse~y---vyvad~ssGL~IvDIS~P~sP------~~~~~lnt~gyaygv~vs--Gn-~aYVadl 146 (370)
T COG5276 79 LLSVINARDLFADVRVSEEY---VYVADWSSGLRIVDISTPDSP------TLIGFLNTDGYAYGVYVS--GN-YAYVADL 146 (370)
T ss_pred eEEEEehhhhhheeEecccE---EEEEcCCCceEEEeccCCCCc------ceeccccCCceEEEEEec--CC-EEEEeec
Confidence 34455666778888888644 444445555999999985321 111111222444555554 66 7777776
Q ss_pred CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc--cccCCCeeEEE
Q 015484 188 DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV--KAHEKEVNYLS 265 (406)
Q Consensus 188 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~i~ 265 (406)
|.-+.+.|+.+.... .+. ..+......-..++.+ ++.-..+..|+-+.+.|+.......-+ ......+.++.
T Consensus 147 ddgfLivdvsdpssP-~la--grya~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~ 220 (370)
T COG5276 147 DDGFLIVDVSDPSSP-QLA--GRYALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVS 220 (370)
T ss_pred cCcEEEEECCCCCCc-eee--eeeccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEE
Confidence 666778899876542 221 2222233334566665 455556778889999999765543222 11233678888
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCCC
Q 015484 266 FNPYNEWVLATASSDTTVALFDMRKMTV 293 (406)
Q Consensus 266 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 293 (406)
.+++.. +++... . -+.+-|....+.
T Consensus 221 vsdnr~-y~vvy~-e-gvlivd~s~~ss 245 (370)
T COG5276 221 VSDNRA-YLVVYD-E-GVLIVDVSGPSS 245 (370)
T ss_pred ecCCee-EEEEcc-c-ceEEEecCCCCC
Confidence 887655 444333 2 366666665543
No 482
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=75.92 E-value=74 Score=30.23 Aligned_cols=72 Identities=11% Similarity=0.014 Sum_probs=43.0
Q ss_pred CeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCC
Q 015484 105 KVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFK 178 (406)
Q Consensus 105 ~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 178 (406)
.+++......-...+.|+|.|++ .+|++--..|.|++++............ +.............|+++|+-
T Consensus 19 ~f~~~~va~GL~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~~~~~l-~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 19 NFDKKVLLSGLNKPWALLWGPDN-QLWVTERATGKILRVNPETGEVKVVFTL-PEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CcEEEEEECCCCCceEEEEcCCC-eEEEEEecCCEEEEEeCCCCceeeeecC-CceeccCCCCceeeEEECCCc
Confidence 35555455555788999999998 5666655469999997654321110001 101111125667899999874
No 483
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=75.31 E-value=1.1e+02 Score=32.00 Aligned_cols=107 Identities=11% Similarity=0.096 Sum_probs=60.9
Q ss_pred EEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCC-Ccc
Q 015484 172 LSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT-NQT 250 (406)
Q Consensus 172 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~ 250 (406)
.+..|... ++++| ....+++||+...+..+. ..++.....|..+++. ...+++|...-.+.++--+. .+.
T Consensus 939 ~Ai~~f~~-~~Lag-vG~~l~~YdlG~K~lLRk----~e~k~~p~~Is~iqt~---~~RI~VgD~qeSV~~~~y~~~~n~ 1009 (1205)
T KOG1898|consen 939 GAICPFQG-RVLAG-VGRFLRLYDLGKKKLLRK----CELKFIPNRISSIQTY---GARIVVGDIQESVHFVRYRREDNQ 1009 (1205)
T ss_pred eEEeccCC-EEEEe-cccEEEEeeCChHHHHhh----hhhccCceEEEEEeec---ceEEEEeeccceEEEEEEecCCCe
Confidence 45566666 66655 456899999977543221 1122235678888875 44555665544555443332 233
Q ss_pred cccc--cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCC
Q 015484 251 QQRV--KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMR 289 (406)
Q Consensus 251 ~~~~--~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~ 289 (406)
+..+ ..-...|+++.+-..+ .+|.+..-|.+.+..+.
T Consensus 1010 l~~fadD~~pR~Vt~~~~lD~~--tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1010 LIVFADDPVPRHVTALELLDYD--TVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred EEEEeCCCccceeeEEEEecCC--ceeeccccCcEEEEECC
Confidence 3333 2334556766665444 47878777887776554
No 484
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=75.26 E-value=62 Score=29.06 Aligned_cols=104 Identities=7% Similarity=0.078 Sum_probs=48.0
Q ss_pred CCCEEEEEecC-----CcEEEEECCCCcc---cccccccCCCe--eEEEecCCCCcEEEEEeCC-----CcEEEEeCCCC
Q 015484 227 NENLFGSAGDD-----CQLMIWDLRTNQT---QQRVKAHEKEV--NYLSFNPYNEWVLATASSD-----TTVALFDMRKM 291 (406)
Q Consensus 227 ~~~~l~~~~~d-----g~i~i~d~~~~~~---~~~~~~~~~~v--~~i~~~~~~~~~l~~~~~d-----g~i~vwd~~~~ 291 (406)
++.+++.|+.+ ..+..+|+.+.+. ...+.....+. .+++.. ++. +.+.|+.. ..+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~-iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGT-LYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCE-EEEEeCcCCCccCceEEEEcCCCC
Confidence 46777777754 3566778766543 11111111111 122222 244 66666642 35888898764
Q ss_pred CC-CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCc----EEEEeCCC
Q 015484 292 TV-PLHILSSHTEEVFQVEWDPNHETVLASSADDRR----LMVWDLNR 334 (406)
Q Consensus 292 ~~-~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~----i~iwd~~~ 334 (406)
.- .+..+.. .......+..-++ .+.+.|+.++. +.+||..+
T Consensus 150 ~W~~~~~~p~-~~r~~~~~~~~~~-~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 150 EWFELPDFPG-EPRVQPVCVKLQN-ELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred CeeECCCCCC-CCCCcceEEEECC-EEEEEcCCCCccccceEEEecCC
Confidence 31 0111111 1111112222234 36777776543 45677665
No 485
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=74.53 E-value=72 Score=29.46 Aligned_cols=12 Identities=33% Similarity=0.454 Sum_probs=8.8
Q ss_pred cEEEEECCCCcc
Q 015484 239 QLMIWDLRTNQT 250 (406)
Q Consensus 239 ~i~i~d~~~~~~ 250 (406)
.+.+||..+.+-
T Consensus 190 ~v~~YD~~t~~W 201 (376)
T PRK14131 190 EVLSYDPSTNQW 201 (376)
T ss_pred eEEEEECCCCee
Confidence 488899877654
No 486
>PRK13684 Ycf48-like protein; Provisional
Probab=74.34 E-value=68 Score=29.09 Aligned_cols=152 Identities=9% Similarity=0.017 Sum_probs=82.2
Q ss_pred CCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEEC
Q 015484 166 DKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDL 245 (406)
Q Consensus 166 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~ 245 (406)
...+.++.+.+++. +++++ ..|.+..- .+.+. ..+.... ......++++.+.+ ++.++++ +..|.+++=..
T Consensus 172 ~g~~~~i~~~~~g~-~v~~g-~~G~i~~s-~~~gg--~tW~~~~--~~~~~~l~~i~~~~-~g~~~~v-g~~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSPDGK-YVAVS-SRGNFYST-WEPGQ--TAWTPHQ--RNSSRRLQSMGFQP-DGNLWML-ARGGQIRFNDP 242 (334)
T ss_pred cceEEEEEECCCCe-EEEEe-CCceEEEE-cCCCC--CeEEEee--CCCcccceeeeEcC-CCCEEEE-ecCCEEEEccC
Confidence 45688999998765 55555 55655431 11211 1222211 22346788999987 5566544 45676654334
Q ss_pred CCCcccccccc----cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec---CCCCCeEEEEEcCCCCCEE
Q 015484 246 RTNQTQQRVKA----HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILS---SHTEEVFQVEWDPNHETVL 318 (406)
Q Consensus 246 ~~~~~~~~~~~----~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~h~~~v~~i~~~p~~~~~l 318 (406)
..+..-..... ....+..+.+.|.+. +++ ++.+|.+.. ....++. -.... .-....+.+.|..++. .
T Consensus 243 d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~~~-~G~~G~v~~-S~d~G~t-W~~~~~~~~~~~~~~~~~~~~~~~--~ 316 (334)
T PRK13684 243 DDLESWSKPIIPEITNGYGYLDLAYRTPGE-IWA-GGGNGTLLV-SKDGGKT-WEKDPVGEEVPSNFYKIVFLDPEK--G 316 (334)
T ss_pred CCCCccccccCCccccccceeeEEEcCCCC-EEE-EcCCCeEEE-eCCCCCC-CeECCcCCCCCcceEEEEEeCCCc--e
Confidence 44443322211 224578889998776 554 445675543 3332222 22221 1223578888876664 3
Q ss_pred EEEeCCCcEEEEeC
Q 015484 319 ASSADDRRLMVWDL 332 (406)
Q Consensus 319 ~s~~~dg~i~iwd~ 332 (406)
...+..|.|.-|+-
T Consensus 317 ~~~G~~G~il~~~~ 330 (334)
T PRK13684 317 FVLGQRGVLLRYVG 330 (334)
T ss_pred EEECCCceEEEecC
Confidence 44666888877754
No 487
>PLN02193 nitrile-specifier protein
Probab=74.19 E-value=69 Score=30.67 Aligned_cols=24 Identities=8% Similarity=0.087 Sum_probs=16.7
Q ss_pred CCCEEEEEecC----CcEEEEECCCCcc
Q 015484 227 NENLFGSAGDD----CQLMIWDLRTNQT 250 (406)
Q Consensus 227 ~~~~l~~~~~d----g~i~i~d~~~~~~ 250 (406)
++++++.++.+ ..+.+||+.+.+-
T Consensus 328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 328 QGKVWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred CCcEEEEECCCCCccCceEEEECCCCEE
Confidence 46677777655 4588999887654
No 488
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=72.60 E-value=1.1e+02 Score=30.59 Aligned_cols=165 Identities=14% Similarity=0.170 Sum_probs=84.6
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee-CCCC-CeeEEEecC-----CCCCeEEE
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK-GHDK-EGYGLSWSP-----FKEGYLVS 184 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~h~~-~v~~l~~~~-----~~~~~l~s 184 (406)
+.-.+.|-.|.|.+++ ..+++...+|.|.+|+........ ...+. .+.. -++. .|-+ ++..++++
T Consensus 126 ~kl~~kvv~Ik~~~~~-~~I~vvl~nG~i~~~d~~~~~l~~------~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~ 197 (670)
T PF10395_consen 126 LKLDDKVVGIKFSSDG-KIIYVVLENGSIQIYDFSENSLEK------VPQLKLKSSINVSYS-KFVNDFELENGKDLLLT 197 (670)
T ss_pred EEcccceEEEEEecCC-CEEEEEEcCCcEEEEecccccccc------ccccccccccceehh-hhhcccccccCCceEEE
Confidence 3457889999999888 567788899999999994322211 00111 1121 1222 2222 23335555
Q ss_pred ecC-C---CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccccc---
Q 015484 185 GSH-D---NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAH--- 257 (406)
Q Consensus 185 ~~~-d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--- 257 (406)
.+. + -..+++.+.... ..+..+.....+........|.-+.|.+..- .++.|.+|++..-+...++.-.
T Consensus 198 v~~~~~~k~~ykL~~l~~~~--~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii 273 (670)
T PF10395_consen 198 VSQLSNSKLSYKLISLSNES--SSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSII 273 (670)
T ss_pred EEEcCCCcEEEEEEEeccCC--cceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhh
Confidence 544 3 246777772111 1111111111122233333444434555533 6779999999877655544211
Q ss_pred --C-CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCC
Q 015484 258 --E-KEVNYLSFNPYNEWVLATASSDTTVALFDMRKM 291 (406)
Q Consensus 258 --~-~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~ 291 (406)
. ..+.++.--..++ +|++ .+..|++.|+.-.
T Consensus 274 ~~~~~~~vSl~~~s~nR-vLLs--~~nkIyLld~~~~ 307 (670)
T PF10395_consen 274 DKESDDLVSLKPPSPNR-VLLS--VNNKIYLLDLKFE 307 (670)
T ss_pred ccccccceEeecCCCCe-EEEE--cCCEEEEEeehhh
Confidence 1 2333443221223 4443 3468999998753
No 489
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=72.59 E-value=80 Score=29.12 Aligned_cols=154 Identities=13% Similarity=0.178 Sum_probs=81.8
Q ss_pred CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEec--C-CCCCeEEEecCCCeEEEEeCCCccCC-ceeeeeeeeec
Q 015484 138 CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWS--P-FKEGYLVSGSHDNKICLWDVSALAQD-KVIDAMHVYEA 213 (406)
Q Consensus 138 g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~-~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~ 213 (406)
..|++|.+............+...+...-..++.+++- + ++.-+.+....+|.+..|.+...... ..-+.++.+..
T Consensus 127 n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~ 206 (381)
T PF02333_consen 127 NSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV 206 (381)
T ss_dssp -EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-
T ss_pred CeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC
Confidence 46999988742111100000001111222456777764 3 34436777788999999988643222 22334455553
Q ss_pred cCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc-----cccc--cccCCCeeEEEec--CCCCc-EEEEEeCCCcE
Q 015484 214 HESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT-----QQRV--KAHEKEVNYLSFN--PYNEW-VLATASSDTTV 283 (406)
Q Consensus 214 ~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~--~~~~~~v~~i~~~--~~~~~-~l~~~~~dg~i 283 (406)
.+.+..++... ....|..+-++.-|.-|+.+.... +... ......|-.|+.- +++.. +|++.-.+++.
T Consensus 207 -~sQ~EGCVVDD-e~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf 284 (381)
T PF02333_consen 207 -GSQPEGCVVDD-ETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSF 284 (381)
T ss_dssp -SS-EEEEEEET-TTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEE
T ss_pred -CCcceEEEEec-ccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeE
Confidence 45788888886 566777888888888888763221 1111 1234567777663 34443 44444457789
Q ss_pred EEEeCCCCCC
Q 015484 284 ALFDMRKMTV 293 (406)
Q Consensus 284 ~vwd~~~~~~ 293 (406)
.|||.+....
T Consensus 285 ~Vy~r~~~~~ 294 (381)
T PF02333_consen 285 AVYDREGPNA 294 (381)
T ss_dssp EEEESSTT--
T ss_pred EEEecCCCCc
Confidence 9999876443
No 490
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=72.32 E-value=55 Score=31.56 Aligned_cols=105 Identities=15% Similarity=0.107 Sum_probs=63.4
Q ss_pred CccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccC-CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC
Q 015484 215 ESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHE-KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV 293 (406)
Q Consensus 215 ~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 293 (406)
..+|..+.+.- ++.+. +|+.|| +..||..+++.++.-.... ..|+.+..+-.++ |.+|+.+| +.+.+.+...-
T Consensus 164 d~~V~aLv~D~-~g~lW-vgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~--LWVGTdqG-v~~~e~~G~~~ 237 (671)
T COG3292 164 DTPVVALVFDA-NGRLW-VGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGR--LWVGTDQG-VYLQEAEGWRA 237 (671)
T ss_pred Cccceeeeeec-cCcEE-EecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCc--EEEEeccc-eEEEchhhccc
Confidence 45678888875 45544 677777 6677887777655443333 6777777777776 77788776 88887765322
Q ss_pred CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcE
Q 015484 294 PLHILSSHTEEVFQVEWDPNHETVLASSADDRRL 327 (406)
Q Consensus 294 ~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i 327 (406)
+-.-.....+.|..+.-..+|. +-.|+..|..
T Consensus 238 sn~~~~lp~~~I~ll~qD~qG~--lWiGTenGl~ 269 (671)
T COG3292 238 SNWGPMLPSGNILLLVQDAQGE--LWIGTENGLW 269 (671)
T ss_pred cccCCCCcchheeeeecccCCC--EEEeecccce
Confidence 1111122334555555555553 5556666554
No 491
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=71.58 E-value=88 Score=29.19 Aligned_cols=107 Identities=9% Similarity=0.088 Sum_probs=60.3
Q ss_pred CccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc-----cccccc--cCCCeeEEEecCCCCcEEEEEeCCCcEEEEe
Q 015484 215 ESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT-----QQRVKA--HEKEVNYLSFNPYNEWVLATASSDTTVALFD 287 (406)
Q Consensus 215 ~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~--~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd 287 (406)
...+..+.|.+ ++.++++ +..|.+. +....+.. ...... ....+..+.+.+++. .+ .++..|.+..-.
T Consensus 280 ~~~l~~v~~~~-dg~l~l~-g~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~-a~G~~G~v~~s~ 354 (398)
T PLN00033 280 ARRIQNMGWRA-DGGLWLL-TRGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AW-AAGGSGILLRST 354 (398)
T ss_pred ccceeeeeEcC-CCCEEEE-eCCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCc-EE-EEECCCcEEEeC
Confidence 45688888987 5666644 4556554 34444432 122211 223588899998776 44 455677666553
Q ss_pred CCCCCCCcEEe---cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEE
Q 015484 288 MRKMTVPLHIL---SSHTEEVFQVEWDPNHETVLASSADDRRLMVW 330 (406)
Q Consensus 288 ~~~~~~~~~~~---~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iw 330 (406)
..++. -... ..-....+.+.|.++++ ....+.+|.|.-|
T Consensus 355 -D~G~t-W~~~~~~~~~~~~ly~v~f~~~~~--g~~~G~~G~il~~ 396 (398)
T PLN00033 355 -DGGKS-WKRDKGADNIAANLYSVKFFDDKK--GFVLGNDGVLLRY 396 (398)
T ss_pred -CCCcc-eeEccccCCCCcceeEEEEcCCCc--eEEEeCCcEEEEe
Confidence 22221 1221 22245688999988765 3445568877654
No 492
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=70.96 E-value=94 Score=29.24 Aligned_cols=31 Identities=32% Similarity=0.611 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 303 EEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 303 ~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
..|.+++..+..+ ++++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~-~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRR-LLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTT-EEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcC-EEEEEeCCCcEEEEEEeC
Confidence 3489999988875 799999999999999986
No 493
>PLN02153 epithiospecifier protein
Probab=70.66 E-value=83 Score=28.52 Aligned_cols=23 Identities=4% Similarity=0.244 Sum_probs=15.3
Q ss_pred CCCEEEEEecC-----------CcEEEEECCCCc
Q 015484 227 NENLFGSAGDD-----------CQLMIWDLRTNQ 249 (406)
Q Consensus 227 ~~~~l~~~~~d-----------g~i~i~d~~~~~ 249 (406)
++++++.|+.+ ..+.+||+++.+
T Consensus 137 ~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~ 170 (341)
T PLN02153 137 ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK 170 (341)
T ss_pred CCEEEEECCccCCCccCCCcccceEEEEECCCCe
Confidence 46777777753 247788887654
No 494
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=69.92 E-value=63 Score=26.86 Aligned_cols=198 Identities=15% Similarity=0.147 Sum_probs=92.3
Q ss_pred CeEEEEEeecCCceeEEEEcCCCCcEEEEEeCC--CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeE
Q 015484 105 KVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSS--CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYL 182 (406)
Q Consensus 105 ~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 182 (406)
..++.+.++|......=-.--.+..++.+.+.- ..|++|++.+++........+.. + ....++.+ +..+-
T Consensus 33 ~~evi~~yphDs~sfTQGL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~-~--FgEGit~~-----gd~~y 104 (262)
T COG3823 33 VYEVIRTYPHDSTSFTQGLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDT-V--FGEGITKL-----GDYFY 104 (262)
T ss_pred ceEEEEeccCchhhhhcceeeeCCEEEEeccccccceeEEEeccCceEEEEeecCCcc-c--cccceeec-----cceEE
Confidence 346677778875433222222233566665543 36999999975443211111100 0 11112111 22122
Q ss_pred EEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccc--cC--
Q 015484 183 VSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA--HE-- 258 (406)
Q Consensus 183 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~-- 258 (406)
+-.-.+|.-..+|.++.++.. .+. ..+.-+.++-. +.+++ .+.....++.-|.++-....++.. ..
T Consensus 105 ~LTw~egvaf~~d~~t~~~lg------~~~-y~GeGWgLt~d--~~~Li-msdGsatL~frdP~tfa~~~~v~VT~~g~p 174 (262)
T COG3823 105 QLTWKEGVAFKYDADTLEELG------RFS-YEGEGWGLTSD--DKNLI-MSDGSATLQFRDPKTFAELDTVQVTDDGVP 174 (262)
T ss_pred EEEeccceeEEEChHHhhhhc------ccc-cCCcceeeecC--CcceE-eeCCceEEEecCHHHhhhcceEEEEECCee
Confidence 333457777888887654322 111 23344455432 34444 444445677667665443333211 11
Q ss_pred -CCeeEEEecCCCCcEEEEEeCCCcEE-----------EEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEe
Q 015484 259 -KEVNYLSFNPYNEWVLATASSDTTVA-----------LFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSA 322 (406)
Q Consensus 259 -~~v~~i~~~~~~~~~l~~~~~dg~i~-----------vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~ 322 (406)
..++-+.|- +|. +.|-.=.+..|. .+|+......+..-..|..-.+.|++.|++..+++||-
T Consensus 175 v~~LNELE~V-dG~-lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 175 VSKLNELEWV-DGE-LYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred cccccceeee-ccE-EEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 122233332 232 222222222233 33444333223333445567889999999877787773
No 495
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=69.89 E-value=47 Score=34.10 Aligned_cols=94 Identities=13% Similarity=0.022 Sum_probs=61.1
Q ss_pred CEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCC-----cEEEEeCCCCCCCcEEecCCCC
Q 015484 229 NLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT-----TVALFDMRKMTVPLHILSSHTE 303 (406)
Q Consensus 229 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~h~~ 303 (406)
++.......+.|.+-|.........-..+..+|.+-+|+|+|+.+..+.+..+ .|++-|+++...-+..+.--..
T Consensus 320 kiAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~a 399 (912)
T TIGR02171 320 KLAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENA 399 (912)
T ss_pred eEEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccc
Confidence 33333333457888887765544331346788999999999994444233333 5888999876655556666677
Q ss_pred CeEEEEEcCCCCCEEEEEe
Q 015484 304 EVFQVEWDPNHETVLASSA 322 (406)
Q Consensus 304 ~v~~i~~~p~~~~~l~s~~ 322 (406)
.|..-...++|.+.|+-.+
T Consensus 400 aiprwrv~e~gdt~ivyv~ 418 (912)
T TIGR02171 400 AIPRWRVLENGDTVIVYVS 418 (912)
T ss_pred cccceEecCCCCeEEEEEc
Confidence 7888888888876554433
No 496
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=69.86 E-value=93 Score=28.73 Aligned_cols=191 Identities=13% Similarity=0.197 Sum_probs=105.2
Q ss_pred eEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEee----CCCCCE-EEEEe-cC---CcEEEEECCCCc-c
Q 015484 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWH----LKNENL-FGSAG-DD---CQLMIWDLRTNQ-T 250 (406)
Q Consensus 181 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~----p~~~~~-l~~~~-~d---g~i~i~d~~~~~-~ 250 (406)
+++....++-+.+||+.... + +.+. .+.++.+..- -.+... |++++ .+ ..|++|.+.... .
T Consensus 70 lIigTdK~~GL~VYdL~Gk~----l---q~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~ 140 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDLDGKE----L---QSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE 140 (381)
T ss_dssp EEEEEETTTEEEEEETTS-E----E---EEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE
T ss_pred eEEEEeCCCCEEEEcCCCcE----E---Eeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc
Confidence 78888888999999998632 2 1111 2233333321 112222 33443 22 468999775321 1
Q ss_pred ccccc-------ccCCCeeEEEe--cC-CCCcEEEEEeCCCcEEEEeCCCCC------CCcEEecCCCCCeEEEEEcCCC
Q 015484 251 QQRVK-------AHEKEVNYLSF--NP-YNEWVLATASSDTTVALFDMRKMT------VPLHILSSHTEEVFQVEWDPNH 314 (406)
Q Consensus 251 ~~~~~-------~~~~~v~~i~~--~~-~~~~~l~~~~~dg~i~vwd~~~~~------~~~~~~~~h~~~v~~i~~~p~~ 314 (406)
+..+. .....++.+++ +| ++..++++...+|.+..|.+.... .+++.+.. .+.+-.|......
T Consensus 141 L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~ 219 (381)
T PF02333_consen 141 LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDET 219 (381)
T ss_dssp EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTT
T ss_pred ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEeccc
Confidence 22221 11234666665 44 466677788889988888775221 23555554 3478888888877
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecC--CCCCeeeEEeC--CCC-CcEEEEEeCCCcEEEEeC
Q 015484 315 ETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG--HKAKISDFSWN--KND-PWVISSVADDNTVQVWQM 389 (406)
Q Consensus 315 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~s--~~~-~~~l~s~~~dg~i~iw~~ 389 (406)
. .|..+-++--|.-|+.+..... ...++....+ ....|-.|+.- +++ .|+|+|.-.++...||+.
T Consensus 220 g-~LYvgEE~~GIW~y~Aep~~~~---------~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r 289 (381)
T PF02333_consen 220 G-RLYVGEEDVGIWRYDAEPEGGN---------DRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDR 289 (381)
T ss_dssp T-EEEEEETTTEEEEEESSCCC-S-----------EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred C-CEEEecCccEEEEEecCCCCCC---------cceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEec
Confidence 6 5888888877777776542211 1233433322 34567777764 333 378888888899999997
Q ss_pred CC
Q 015484 390 TD 391 (406)
Q Consensus 390 ~~ 391 (406)
..
T Consensus 290 ~~ 291 (381)
T PF02333_consen 290 EG 291 (381)
T ss_dssp ST
T ss_pred CC
Confidence 65
No 497
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=69.34 E-value=88 Score=28.25 Aligned_cols=157 Identities=13% Similarity=0.110 Sum_probs=81.9
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCe------EEEEeCCCcccccc-CCCCCceeeeCCCC--------CeeEEEecCCCC
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCE------VYVFDCAKQAEKQQ-DDCDPDLRLKGHDK--------EGYGLSWSPFKE 179 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~------i~iw~~~~~~~~~~-~~~~~~~~~~~h~~--------~v~~l~~~~~~~ 179 (406)
-+.+..|.+.|.+.. +++.+.+|. ++.+++........ -.......+....+ ..-+|++.+++.
T Consensus 19 ~GGlSgl~~~~~~~~-~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGR-FYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCE-EEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 377889999975534 555567777 66666554111000 00111112222211 233788866565
Q ss_pred CeEEEecCC------CeEEEEeCCCccCCceeeeeee---------eeccCccEEEEEeeCCCCCEEEEEec-----CCc
Q 015484 180 GYLVSGSHD------NKICLWDVSALAQDKVIDAMHV---------YEAHESVVEDVSWHLKNENLFGSAGD-----DCQ 239 (406)
Q Consensus 180 ~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~---------~~~~~~~i~~i~~~p~~~~~l~~~~~-----dg~ 239 (406)
++++.-.+ ..|..++.. +.....+..... -...+....+++++|+ ++.|+++.. |+.
T Consensus 98 -~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~d-G~~l~~~~E~~l~~d~~ 174 (326)
T PF13449_consen 98 -FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPD-GRTLFAAMESPLKQDGP 174 (326)
T ss_pred -EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCC-CCEEEEEECccccCCCc
Confidence 66666556 678888866 433232211111 1224567899999994 553334322 221
Q ss_pred ---------EEE--EECCC-Ccccccc----cc-----cCCCeeEEEecCCCCcEEEE
Q 015484 240 ---------LMI--WDLRT-NQTQQRV----KA-----HEKEVNYLSFNPYNEWVLAT 276 (406)
Q Consensus 240 ---------i~i--~d~~~-~~~~~~~----~~-----~~~~v~~i~~~~~~~~~l~~ 276 (406)
+++ ||..+ +.....+ .. ....+..+.+-++++ +|+.
T Consensus 175 ~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvL 231 (326)
T PF13449_consen 175 RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVL 231 (326)
T ss_pred ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEE
Confidence 444 55544 2222222 21 356788899999888 5544
No 498
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=69.29 E-value=73 Score=27.33 Aligned_cols=143 Identities=10% Similarity=0.044 Sum_probs=68.1
Q ss_pred EEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeC-CC--cEEEEeCCCCC--CCcEEe---cCCCCCeEEEEEc
Q 015484 240 LMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS-DT--TVALFDMRKMT--VPLHIL---SSHTEEVFQVEWD 311 (406)
Q Consensus 240 i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~--~~~~~~---~~h~~~v~~i~~~ 311 (406)
-.+||+.+++....-.....-..+-++-++|. +|.+|+. +| .+++++.-... ...... -.....-..+.--
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~-ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGR-LLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCC-EEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 45788887664322122233333446778998 7777765 33 68888765411 101110 1122334445556
Q ss_pred CCCCCEEEEEeCC-CcEEEEeCCCCCcccccccccCCCCeeEEEe--cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 312 PNHETVLASSADD-RRLMVWDLNRIGDEQLELDAEDGPPELLFSH--GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 312 p~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
|+|+ +|+.|+.. ....+|.-......... ...+... ......---+...|+|+ +++.+..+ -.|||
T Consensus 127 ~DG~-vlIvGG~~~~t~E~~P~~~~~~~~~~-------~~~l~~~~~~~~~nlYP~~~llPdG~-lFi~an~~--s~i~d 195 (243)
T PF07250_consen 127 PDGR-VLIVGGSNNPTYEFWPPKGPGPGPVT-------LPFLSQTSDTLPNNLYPFVHLLPDGN-LFIFANRG--SIIYD 195 (243)
T ss_pred CCCC-EEEEeCcCCCcccccCCccCCCCcee-------eecchhhhccCccccCceEEEcCCCC-EEEEEcCC--cEEEe
Confidence 7887 56666655 23344433211000000 0000000 00011112456679999 67776644 46678
Q ss_pred CCCccc
Q 015484 389 MTDSIY 394 (406)
Q Consensus 389 ~~~~~~ 394 (406)
..++..
T Consensus 196 ~~~n~v 201 (243)
T PF07250_consen 196 YKTNTV 201 (243)
T ss_pred CCCCeE
Confidence 877743
No 499
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=69.18 E-value=18 Score=35.47 Aligned_cols=67 Identities=13% Similarity=0.126 Sum_probs=38.9
Q ss_pred CCCEEEEEecCCcEEEEECCC----Ccccc-----------ccc-----------ccCCCeeEEEecC---CCCcEEEEE
Q 015484 227 NENLFGSAGDDCQLMIWDLRT----NQTQQ-----------RVK-----------AHEKEVNYLSFNP---YNEWVLATA 277 (406)
Q Consensus 227 ~~~~l~~~~~dg~i~i~d~~~----~~~~~-----------~~~-----------~~~~~v~~i~~~~---~~~~~l~~~ 277 (406)
+...++.+..||.+....... +.... .+. .....+.+++.+. ++..++++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 456667777888888777654 11110 000 0123455566665 233489999
Q ss_pred eCCCcEEEEeCCCCCC
Q 015484 278 SSDTTVALFDMRKMTV 293 (406)
Q Consensus 278 ~~dg~i~vwd~~~~~~ 293 (406)
+.|+.+++||+.+...
T Consensus 237 ~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQC 252 (547)
T ss_dssp ETTSEEEEEETTTTCE
T ss_pred eCCCeEEEEECCCCeE
Confidence 9999999999998765
No 500
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=69.14 E-value=81 Score=27.79 Aligned_cols=154 Identities=16% Similarity=0.154 Sum_probs=94.0
Q ss_pred CCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEEC
Q 015484 166 DKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDL 245 (406)
Q Consensus 166 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~ 245 (406)
.+-+..+.++ ++ +...+..+.-+++.|+.+......+..+ . ..+--.++.. ++++...+..|..+.+.|+
T Consensus 86 ~~l~~Dv~vs--e~-yvyvad~ssGL~IvDIS~P~sP~~~~~l---n-t~gyaygv~v---sGn~aYVadlddgfLivdv 155 (370)
T COG5276 86 RDLFADVRVS--EE-YVYVADWSSGLRIVDISTPDSPTLIGFL---N-TDGYAYGVYV---SGNYAYVADLDDGFLIVDV 155 (370)
T ss_pred hhhhheeEec--cc-EEEEEcCCCceEEEeccCCCCcceeccc---c-CCceEEEEEe---cCCEEEEeeccCcEEEEEC
Confidence 3455677776 34 7777777788999999987654333221 1 1133444444 3667666665666778898
Q ss_pred CCCccc---ccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCC-CeEEEEEcCCCCCEEEEE
Q 015484 246 RTNQTQ---QRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTE-EVFQVEWDPNHETVLASS 321 (406)
Q Consensus 246 ~~~~~~---~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~-~v~~i~~~p~~~~~l~s~ 321 (406)
.+.... .........-..++.+ |+ +...+..|+-+.+-|+.+...|+..-.-..+ .+.++..+++.. +++..
T Consensus 156 sdpssP~lagrya~~~~d~~~v~IS--Gn-~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~-y~vvy 231 (370)
T COG5276 156 SDPSSPQLAGRYALPGGDTHDVAIS--GN-YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRA-YLVVY 231 (370)
T ss_pred CCCCCceeeeeeccCCCCceeEEEe--cC-eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCee-EEEEc
Confidence 765432 2223333334556665 55 5666678889999999998877654443344 688888887754 23333
Q ss_pred eCCCcEEEEeCCCC
Q 015484 322 ADDRRLMVWDLNRI 335 (406)
Q Consensus 322 ~~dg~i~iwd~~~~ 335 (406)
+--+.+-|....
T Consensus 232 --~egvlivd~s~~ 243 (370)
T COG5276 232 --DEGVLIVDVSGP 243 (370)
T ss_pred --ccceEEEecCCC
Confidence 333556666553
Done!