Query 015484
Match_columns 406
No_of_seqs 662 out of 4171
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 13:26:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015484.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015484hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xyi_A Probable histone-bindin 100.0 4E-63 1.4E-67 464.5 38.9 392 7-401 15-420 (430)
2 4gqb_B Methylosome protein 50; 100.0 1.4E-43 4.7E-48 321.2 36.9 258 110-396 77-336 (344)
3 3ow8_A WD repeat-containing pr 100.0 2.2E-41 7.4E-46 304.3 39.5 286 39-390 34-320 (321)
4 2ynn_A Coatomer subunit beta'; 100.0 1.3E-41 4.5E-46 303.6 37.0 251 111-394 9-262 (304)
5 1vyh_C Platelet-activating fac 100.0 6.2E-41 2.1E-45 311.8 35.9 246 110-390 145-410 (410)
6 1vyh_C Platelet-activating fac 100.0 8.7E-41 3E-45 310.8 36.0 250 111-394 104-372 (410)
7 4g56_B MGC81050 protein; prote 100.0 1E-40 3.5E-45 304.5 34.7 254 109-392 88-344 (357)
8 3ow8_A WD repeat-containing pr 100.0 1.1E-40 3.9E-45 299.6 32.1 252 110-393 27-281 (321)
9 3fm0_A Protein CIAO1; WDR39,SG 100.0 6.5E-40 2.2E-44 297.9 36.8 265 112-395 58-339 (345)
10 1got_B GT-beta; complex (GTP-b 100.0 5.4E-39 1.9E-43 291.3 39.5 248 109-388 91-340 (340)
11 2pm7_B Protein transport prote 100.0 1.9E-39 6.5E-44 288.6 34.6 256 111-390 5-284 (297)
12 1got_B GT-beta; complex (GTP-b 100.0 4.3E-39 1.5E-43 291.9 36.8 253 109-393 49-303 (340)
13 2ynn_A Coatomer subunit beta'; 100.0 1.4E-38 4.9E-43 283.9 38.6 285 39-392 15-303 (304)
14 2pbi_B Guanine nucleotide-bind 100.0 3E-38 1E-42 287.9 40.1 251 110-388 101-354 (354)
15 3frx_A Guanine nucleotide-bind 100.0 5.7E-39 1.9E-43 288.5 34.6 267 111-392 13-318 (319)
16 4g56_B MGC81050 protein; prote 100.0 8.7E-40 3E-44 298.3 28.7 259 112-394 39-304 (357)
17 3iz6_a 40S ribosomal protein R 100.0 1.3E-39 4.4E-44 300.0 30.0 263 109-392 102-376 (380)
18 4gqb_B Methylosome protein 50; 100.0 3.4E-39 1.2E-43 292.4 32.0 261 113-395 28-293 (344)
19 3iz6_a 40S ribosomal protein R 100.0 2E-39 7E-44 298.6 31.1 259 109-393 60-331 (380)
20 2pbi_B Guanine nucleotide-bind 100.0 3E-38 1E-42 287.9 38.1 256 109-393 58-317 (354)
21 2hes_X YDR267CP; beta-propelle 100.0 3.3E-38 1.1E-42 284.9 35.7 256 114-391 57-328 (330)
22 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.1E-38 3.7E-43 289.8 32.1 272 106-392 5-284 (345)
23 2xzm_R RACK1; ribosome, transl 100.0 3.8E-37 1.3E-41 279.5 39.2 310 39-392 23-341 (343)
24 1nr0_A Actin interacting prote 100.0 7.3E-38 2.5E-42 305.8 36.8 264 111-394 55-358 (611)
25 3bg1_A Protein SEC13 homolog; 100.0 3.9E-39 1.3E-43 289.2 25.0 257 111-390 9-292 (316)
26 2hes_X YDR267CP; beta-propelle 100.0 5E-38 1.7E-42 283.7 32.3 263 110-392 9-281 (330)
27 2j04_B YDR362CP, TAU91; beta p 100.0 1.3E-37 4.4E-42 296.0 34.7 327 36-392 132-518 (524)
28 4ery_A WD repeat-containing pr 100.0 4.5E-37 1.6E-41 275.2 35.8 251 110-394 18-271 (312)
29 4aow_A Guanine nucleotide-bind 100.0 3.7E-37 1.3E-41 278.8 34.8 274 105-393 27-339 (340)
30 2pm9_A Protein WEB1, protein t 100.0 3.4E-38 1.2E-42 293.7 28.8 309 39-395 14-341 (416)
31 4e54_B DNA damage-binding prot 100.0 7.9E-38 2.7E-42 293.3 31.2 270 111-395 115-434 (435)
32 4ery_A WD repeat-containing pr 100.0 1.9E-36 6.4E-41 271.2 37.7 247 110-390 60-311 (312)
33 1erj_A Transcriptional repress 100.0 6.4E-37 2.2E-41 283.3 35.5 263 106-393 55-343 (393)
34 1erj_A Transcriptional repress 100.0 3.8E-37 1.3E-41 284.8 33.2 244 114-391 122-389 (393)
35 2pm9_A Protein WEB1, protein t 100.0 5.8E-38 2E-42 292.2 25.6 342 16-392 46-415 (416)
36 3k26_A Polycomb protein EED; W 100.0 1.2E-36 4.2E-41 277.9 33.2 300 37-391 18-366 (366)
37 3i2n_A WD repeat-containing pr 100.0 3.7E-36 1.3E-40 274.0 35.8 308 37-392 18-354 (357)
38 3f3f_A Nucleoporin SEH1; struc 100.0 1.7E-36 5.8E-41 274.7 32.4 275 111-393 7-339 (351)
39 2xzm_R RACK1; ribosome, transl 100.0 5.7E-36 1.9E-40 271.8 34.7 254 111-393 17-287 (343)
40 2ymu_A WD-40 repeat protein; u 100.0 6E-36 2E-40 290.6 35.2 241 108-388 337-577 (577)
41 1gxr_A ESG1, transducin-like e 100.0 4E-35 1.4E-39 264.8 38.1 257 105-394 41-299 (337)
42 4a11_B DNA excision repair pro 100.0 4.4E-35 1.5E-39 271.6 38.6 276 111-396 39-370 (408)
43 1nr0_A Actin interacting prote 100.0 5.8E-36 2E-40 292.4 33.6 246 114-394 17-273 (611)
44 3jrp_A Fusion protein of prote 100.0 5.1E-36 1.7E-40 275.2 30.0 258 111-391 7-287 (379)
45 3zwl_B Eukaryotic translation 100.0 3.9E-35 1.3E-39 268.2 35.6 261 104-394 21-349 (369)
46 1gxr_A ESG1, transducin-like e 100.0 2.3E-34 7.9E-39 259.8 39.6 285 37-389 51-335 (337)
47 4aez_A CDC20, WD repeat-contai 100.0 7.2E-35 2.5E-39 270.3 37.0 256 106-395 125-384 (401)
48 1sq9_A Antiviral protein SKI8; 100.0 2.6E-35 8.7E-40 272.6 33.9 298 38-392 17-396 (397)
49 3dm0_A Maltose-binding peripla 100.0 7.1E-35 2.4E-39 289.1 38.7 304 39-391 384-693 (694)
50 3ei3_B DNA damage-binding prot 100.0 5.1E-35 1.7E-39 269.6 35.1 267 109-391 67-382 (383)
51 4h5i_A Guanine nucleotide-exch 100.0 4E-36 1.4E-40 274.8 25.7 307 33-393 10-345 (365)
52 1r5m_A SIR4-interacting protei 100.0 3E-34 1E-38 267.4 38.3 260 114-390 107-424 (425)
53 3dm0_A Maltose-binding peripla 100.0 9.9E-35 3.4E-39 288.1 35.8 254 110-393 377-634 (694)
54 2ymu_A WD-40 repeat protein; u 100.0 8.2E-35 2.8E-39 282.6 34.2 245 109-393 297-541 (577)
55 2j04_B YDR362CP, TAU91; beta p 100.0 4.1E-36 1.4E-40 285.7 23.8 264 110-396 128-433 (524)
56 1k8k_C P40, ARP2/3 complex 41 100.0 1.2E-34 4.1E-39 265.6 32.7 304 38-392 9-362 (372)
57 3odt_A Protein DOA1; ubiquitin 100.0 2.2E-33 7.7E-38 250.8 39.6 253 108-400 52-305 (313)
58 1k8k_C P40, ARP2/3 complex 41 100.0 6.9E-35 2.4E-39 267.2 30.1 248 113-391 6-274 (372)
59 3k26_A Polycomb protein EED; W 100.0 4E-35 1.4E-39 268.0 27.7 262 112-393 15-320 (366)
60 3dwl_C Actin-related protein 2 100.0 2.5E-36 8.6E-41 277.6 19.2 252 113-391 9-281 (377)
61 3dwl_C Actin-related protein 2 100.0 2.8E-35 9.4E-40 270.7 25.6 301 39-389 13-377 (377)
62 4gga_A P55CDC, cell division c 100.0 1.3E-33 4.6E-38 263.4 36.7 247 111-392 143-396 (420)
63 1sq9_A Antiviral protein SKI8; 100.0 2.1E-34 7.2E-39 266.5 29.8 255 112-393 13-324 (397)
64 3i2n_A WD repeat-containing pr 100.0 1.8E-34 6.1E-39 262.8 28.2 263 104-393 7-293 (357)
65 3dw8_B Serine/threonine-protei 100.0 1.4E-34 4.8E-39 272.0 27.3 264 112-394 25-376 (447)
66 2aq5_A Coronin-1A; WD40 repeat 100.0 2.9E-34 1E-38 266.3 28.3 258 116-393 35-301 (402)
67 1r5m_A SIR4-interacting protei 100.0 2.9E-33 9.9E-38 260.7 35.2 258 106-393 36-363 (425)
68 3mkq_A Coatomer beta'-subunit; 100.0 8.7E-34 3E-38 286.4 33.6 250 110-393 8-261 (814)
69 3frx_A Guanine nucleotide-bind 100.0 1.5E-33 5.1E-38 253.2 30.8 215 159-393 10-229 (319)
70 3jro_A Fusion protein of prote 100.0 9.5E-35 3.3E-39 290.1 24.9 258 111-392 5-286 (753)
71 3vl1_A 26S proteasome regulato 100.0 3.3E-34 1.1E-38 267.3 27.0 244 116-392 98-366 (420)
72 3gre_A Serine/threonine-protei 100.0 1.5E-34 5.2E-39 271.1 24.9 272 112-394 60-362 (437)
73 2aq5_A Coronin-1A; WD40 repeat 100.0 5.8E-34 2E-38 264.3 27.3 260 112-394 78-345 (402)
74 2pm7_B Protein transport prote 100.0 3.3E-33 1.1E-37 248.3 29.5 217 160-392 3-239 (297)
75 3odt_A Protein DOA1; ubiquitin 100.0 7.5E-33 2.6E-37 247.4 32.1 245 109-394 12-258 (313)
76 1yfq_A Cell cycle arrest prote 100.0 2.3E-33 8E-38 254.1 29.1 253 113-394 9-285 (342)
77 3vl1_A 26S proteasome regulato 100.0 1.7E-32 5.8E-37 255.7 34.3 262 108-391 131-419 (420)
78 4ggc_A P55CDC, cell division c 100.0 6.9E-32 2.4E-36 241.7 36.2 247 110-391 62-315 (318)
79 3mmy_A MRNA export factor; mRN 100.0 3E-33 1E-37 255.5 27.6 249 111-390 35-345 (368)
80 4gq1_A NUP37; propeller, trans 100.0 4.9E-33 1.7E-37 257.1 27.3 233 129-389 102-387 (393)
81 3dw8_B Serine/threonine-protei 100.0 5.7E-32 1.9E-36 254.2 34.9 318 38-390 29-445 (447)
82 3v7d_B Cell division control p 100.0 7.6E-32 2.6E-36 254.7 35.9 251 109-395 156-425 (464)
83 3mkq_A Coatomer beta'-subunit; 100.0 6.9E-32 2.3E-36 272.5 37.8 286 39-392 15-303 (814)
84 3v7d_B Cell division control p 100.0 6.4E-32 2.2E-36 255.2 34.2 245 108-393 114-383 (464)
85 1yfq_A Cell cycle arrest prote 100.0 3.8E-31 1.3E-35 239.5 37.5 277 39-389 13-322 (342)
86 1p22_A F-BOX/WD-repeat protein 100.0 8.5E-32 2.9E-36 252.3 33.9 250 110-394 168-417 (435)
87 3sfz_A APAF-1, apoptotic pepti 100.0 2.5E-32 8.5E-37 287.7 33.7 250 109-391 609-913 (1249)
88 3gre_A Serine/threonine-protei 100.0 3.2E-33 1.1E-37 262.1 23.6 264 111-388 107-437 (437)
89 4aez_A CDC20, WD repeat-contai 100.0 8.5E-32 2.9E-36 249.6 30.7 246 109-393 85-338 (401)
90 4e54_B DNA damage-binding prot 100.0 9.1E-33 3.1E-37 258.9 24.3 217 158-393 111-329 (435)
91 1pgu_A Actin interacting prote 100.0 8.5E-32 2.9E-36 263.1 32.0 254 113-394 16-286 (615)
92 3bg1_A Protein SEC13 homolog; 100.0 7.6E-32 2.6E-36 241.7 28.3 251 39-334 15-293 (316)
93 2xyi_A Probable histone-bindin 100.0 1.1E-31 3.8E-36 251.1 30.3 219 160-391 122-353 (430)
94 3sfz_A APAF-1, apoptotic pepti 100.0 5.1E-31 1.7E-35 277.8 36.2 266 109-394 651-1037(1249)
95 2oaj_A Protein SNI1; WD40 repe 100.0 3.9E-31 1.3E-35 267.8 32.4 261 106-389 8-310 (902)
96 1pgu_A Actin interacting prote 100.0 1.2E-30 4.1E-35 255.0 34.1 255 109-393 57-330 (615)
97 1p22_A F-BOX/WD-repeat protein 100.0 2.1E-30 7.2E-35 242.8 32.9 235 112-393 130-367 (435)
98 4aow_A Guanine nucleotide-bind 100.0 7.2E-31 2.5E-35 237.4 28.3 218 158-393 30-248 (340)
99 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.9E-30 6.5E-35 244.2 31.7 260 115-389 4-337 (450)
100 4a11_B DNA excision repair pro 100.0 6.1E-30 2.1E-34 237.0 34.5 308 16-390 24-404 (408)
101 4gga_A P55CDC, cell division c 100.0 1.1E-29 3.8E-34 236.9 34.8 243 117-394 107-356 (420)
102 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.6E-29 5.4E-34 237.6 36.1 238 110-394 154-394 (445)
103 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5.7E-30 2E-34 241.0 31.8 250 113-391 100-391 (450)
104 3jrp_A Fusion protein of prote 100.0 2.4E-30 8.2E-35 237.3 28.4 216 159-392 4-241 (379)
105 3vu4_A KMHSV2; beta-propeller 100.0 1.1E-29 3.6E-34 231.4 32.3 238 111-393 15-273 (355)
106 3lrv_A PRE-mRNA-splicing facto 100.0 3.4E-31 1.2E-35 240.3 22.3 239 124-392 45-293 (343)
107 2j04_A TAU60, YPL007P, hypothe 100.0 1.1E-30 3.8E-35 243.1 25.7 240 113-390 13-296 (588)
108 2oaj_A Protein SNI1; WD40 repe 100.0 1.9E-30 6.5E-35 262.8 29.7 243 37-332 17-310 (902)
109 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.3E-29 4.4E-34 238.2 33.1 237 110-393 113-350 (445)
110 3f3f_A Nucleoporin SEH1; struc 100.0 3.4E-29 1.2E-33 226.5 32.4 260 39-334 13-337 (351)
111 3ei3_B DNA damage-binding prot 100.0 1.9E-29 6.7E-34 232.2 28.4 218 157-394 64-285 (383)
112 4h5i_A Guanine nucleotide-exch 100.0 8.6E-30 2.9E-34 232.9 25.0 202 114-334 132-343 (365)
113 4ggc_A P55CDC, cell division c 100.0 3.7E-28 1.3E-32 217.4 33.4 242 118-394 28-276 (318)
114 3zwl_B Eukaryotic translation 100.0 9.8E-29 3.3E-33 225.6 29.5 215 155-394 21-252 (369)
115 3lrv_A PRE-mRNA-splicing facto 100.0 2.4E-28 8.1E-33 221.6 29.3 243 115-392 76-334 (343)
116 1l0q_A Surface layer protein; 100.0 6.1E-28 2.1E-32 222.7 32.4 251 108-394 24-278 (391)
117 3vu4_A KMHSV2; beta-propeller 100.0 4.4E-27 1.5E-31 214.1 36.2 248 117-393 60-338 (355)
118 3jro_A Fusion protein of prote 100.0 2.4E-28 8.1E-33 243.9 28.3 215 160-392 3-239 (753)
119 2w18_A PALB2, fancn, partner a 100.0 1.1E-27 3.8E-32 209.9 27.7 255 104-390 23-356 (356)
120 3bws_A Protein LP49; two-domai 100.0 3.1E-27 1.1E-31 221.0 30.1 260 104-394 111-393 (433)
121 2j04_A TAU60, YPL007P, hypothe 100.0 1.9E-28 6.7E-33 228.1 20.1 309 36-379 14-349 (588)
122 4gq1_A NUP37; propeller, trans 100.0 3.6E-28 1.2E-32 224.5 21.0 280 111-394 11-351 (393)
123 3bws_A Protein LP49; two-domai 100.0 1E-26 3.6E-31 217.4 30.8 242 113-391 167-432 (433)
124 3mmy_A MRNA export factor; mRN 100.0 2.8E-27 9.6E-32 215.9 25.7 217 156-393 29-306 (368)
125 2w18_A PALB2, fancn, partner a 100.0 4.3E-27 1.5E-31 206.1 24.6 261 17-332 65-355 (356)
126 1l0q_A Surface layer protein; 100.0 1.1E-25 3.6E-30 207.7 28.7 231 129-393 3-235 (391)
127 3hfq_A Uncharacterized protein 99.9 1.3E-23 4.5E-28 190.6 31.2 295 61-395 2-323 (347)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 5.9E-24 2E-28 197.5 27.4 246 109-395 111-391 (415)
129 2oit_A Nucleoporin 214KDA; NH2 99.9 2.7E-24 9.1E-29 200.5 23.3 213 116-335 37-279 (434)
130 1ri6_A Putative isomerase YBHE 99.9 4.1E-23 1.4E-27 186.5 27.6 267 105-394 27-313 (343)
131 2ojh_A Uncharacterized protein 99.9 1.7E-22 5.7E-27 178.2 27.2 242 109-381 35-292 (297)
132 2hqs_A Protein TOLB; TOLB, PAL 99.9 5.4E-22 1.8E-26 184.3 31.3 224 109-372 172-410 (415)
133 3u4y_A Uncharacterized protein 99.9 1.7E-21 5.9E-26 175.2 29.9 251 114-394 39-307 (331)
134 3scy_A Hypothetical bacterial 99.9 1.3E-20 4.3E-25 171.8 34.7 298 60-395 12-343 (361)
135 1nir_A Nitrite reductase; hemo 99.9 2.3E-21 7.8E-26 185.7 29.8 265 109-395 172-462 (543)
136 3u4y_A Uncharacterized protein 99.9 3E-21 1E-25 173.7 28.3 245 121-394 3-255 (331)
137 3vgz_A Uncharacterized protein 99.9 4E-21 1.4E-25 174.3 28.7 251 111-394 36-306 (353)
138 2ojh_A Uncharacterized protein 99.9 1.3E-21 4.5E-26 172.4 23.3 228 133-394 17-261 (297)
139 2oit_A Nucleoporin 214KDA; NH2 99.9 4E-22 1.4E-26 185.8 19.8 213 167-392 37-279 (434)
140 1nir_A Nitrite reductase; hemo 99.9 4.2E-21 1.5E-25 183.8 27.1 236 122-391 144-402 (543)
141 1ri6_A Putative isomerase YBHE 99.9 6.2E-21 2.1E-25 172.1 24.7 240 129-390 6-261 (343)
142 2ecf_A Dipeptidyl peptidase IV 99.9 2.6E-21 9E-26 193.2 23.8 241 115-390 36-366 (741)
143 3vgz_A Uncharacterized protein 99.9 1.4E-19 4.9E-24 164.0 30.0 239 108-380 81-334 (353)
144 1xfd_A DIP, dipeptidyl aminope 99.9 9E-21 3.1E-25 188.8 22.9 246 117-391 62-393 (723)
145 1pby_B Quinohemoprotein amine 99.9 3.5E-20 1.2E-24 166.8 24.4 248 108-394 23-313 (337)
146 2z3z_A Dipeptidyl aminopeptida 99.9 3.1E-20 1E-24 184.5 26.2 252 109-393 114-437 (706)
147 2ecf_A Dipeptidyl peptidase IV 99.9 4.1E-20 1.4E-24 184.6 26.2 241 116-391 109-413 (741)
148 3o4h_A Acylamino-acid-releasin 99.9 1.2E-20 4.2E-25 183.1 21.4 233 115-389 21-274 (582)
149 1xfd_A DIP, dipeptidyl aminope 99.9 1.9E-20 6.4E-25 186.5 22.7 244 116-393 17-347 (723)
150 2z3z_A Dipeptidyl aminopeptida 99.8 1.2E-19 4.1E-24 180.2 23.1 242 116-393 82-393 (706)
151 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.5E-18 8.6E-23 156.9 28.2 288 62-394 3-344 (365)
152 1jmx_B Amine dehydrogenase; ox 99.8 6.6E-19 2.3E-23 159.3 23.3 235 120-394 4-328 (349)
153 1k32_A Tricorn protease; prote 99.8 1.6E-18 5.5E-23 179.3 27.7 248 110-393 198-463 (1045)
154 1k32_A Tricorn protease; prote 99.8 9.7E-19 3.3E-23 180.9 25.0 234 116-391 245-502 (1045)
155 3hfq_A Uncharacterized protein 99.8 9.2E-18 3.2E-22 151.9 24.5 232 137-390 15-270 (347)
156 3o4h_A Acylamino-acid-releasin 99.8 1.9E-17 6.5E-22 160.6 25.7 272 37-391 21-315 (582)
157 1pby_B Quinohemoprotein amine 99.8 6.2E-18 2.1E-22 152.0 20.7 234 129-394 2-272 (337)
158 1z68_A Fibroblast activation p 99.8 8.8E-19 3E-23 174.4 14.6 242 119-393 19-348 (719)
159 1z68_A Fibroblast activation p 99.8 1.2E-17 4.2E-22 166.1 22.3 244 117-391 61-391 (719)
160 3scy_A Hypothetical bacterial 99.8 2.1E-16 7E-21 143.9 28.5 239 129-390 14-290 (361)
161 3fvz_A Peptidyl-glycine alpha- 99.8 4.1E-16 1.4E-20 140.1 28.6 248 116-392 24-323 (329)
162 1q7f_A NHL, brain tumor CG1071 99.8 7E-16 2.4E-20 135.6 26.9 237 115-392 29-281 (286)
163 4a5s_A Dipeptidyl peptidase 4 99.7 1.6E-16 5.4E-21 158.5 22.4 250 116-394 17-356 (740)
164 3pe7_A Oligogalacturonate lyas 99.7 3.6E-16 1.2E-20 143.6 22.7 251 111-394 26-332 (388)
165 1jmx_B Amine dehydrogenase; ox 99.7 8E-16 2.7E-20 138.9 24.0 203 109-334 34-325 (349)
166 3azo_A Aminopeptidase; POP fam 99.7 2E-15 6.7E-20 148.8 26.0 246 111-393 19-327 (662)
167 3pe7_A Oligogalacturonate lyas 99.7 9.3E-16 3.2E-20 140.8 20.9 244 114-390 79-381 (388)
168 3e5z_A Putative gluconolactona 99.7 2.8E-14 9.7E-19 125.9 28.9 245 113-396 25-291 (296)
169 1rwi_B Serine/threonine-protei 99.7 2.1E-14 7.1E-19 124.9 27.5 241 117-394 25-267 (270)
170 1jof_A Carboxy-CIS,CIS-muconat 99.7 1.1E-14 3.8E-19 132.6 24.7 243 131-394 5-295 (365)
171 2dg1_A DRP35, lactonase; beta 99.7 2.1E-13 7.3E-18 122.4 32.6 236 112-380 41-300 (333)
172 3azo_A Aminopeptidase; POP fam 99.7 3.8E-15 1.3E-19 146.7 22.8 237 120-393 81-371 (662)
173 2dg1_A DRP35, lactonase; beta 99.7 1.1E-14 3.7E-19 130.8 22.2 247 116-392 6-264 (333)
174 2xdw_A Prolyl endopeptidase; a 99.7 3.8E-14 1.3E-18 140.7 27.5 250 114-393 123-416 (710)
175 2oiz_A Aromatic amine dehydrog 99.6 6.5E-14 2.2E-18 127.2 23.5 225 136-392 29-335 (361)
176 3c5m_A Oligogalacturonate lyas 99.6 7.8E-15 2.7E-19 134.9 16.7 240 116-394 36-332 (396)
177 3c5m_A Oligogalacturonate lyas 99.6 2.3E-14 8E-19 131.6 18.9 239 120-395 85-388 (396)
178 2bkl_A Prolyl endopeptidase; m 99.6 6.4E-14 2.2E-18 138.7 22.1 249 114-393 119-399 (695)
179 1q7f_A NHL, brain tumor CG1071 99.6 2.8E-13 9.6E-18 118.8 23.6 207 164-393 27-240 (286)
180 2z2n_A Virginiamycin B lyase; 99.6 5.5E-12 1.9E-16 111.0 30.9 242 113-390 12-254 (299)
181 4a5s_A Dipeptidyl peptidase 4 99.6 5.6E-14 1.9E-18 140.1 19.7 201 119-334 65-353 (740)
182 2gop_A Trilobed protease; beta 99.6 3E-13 1E-17 122.0 22.0 223 116-390 59-330 (347)
183 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 1.5E-12 5.3E-17 115.6 25.9 246 114-392 16-300 (314)
184 2oiz_A Aromatic amine dehydrog 99.6 1E-12 3.5E-17 119.3 25.1 219 120-372 54-360 (361)
185 3fvz_A Peptidyl-glycine alpha- 99.6 1.3E-12 4.3E-17 117.2 24.5 207 114-334 89-322 (329)
186 2z2n_A Virginiamycin B lyase; 99.6 1.5E-11 5.1E-16 108.2 31.1 242 114-393 55-297 (299)
187 2gop_A Trilobed protease; beta 99.6 5.5E-13 1.9E-17 120.3 21.6 222 116-392 15-292 (347)
188 1xip_A Nucleoporin NUP159; bet 99.5 3.5E-13 1.2E-17 121.7 19.0 179 117-320 39-230 (388)
189 3dsm_A Uncharacterized protein 99.5 1.3E-12 4.5E-17 117.0 21.2 244 116-392 44-303 (328)
190 3g4e_A Regucalcin; six bladed 99.5 9.2E-12 3.1E-16 109.8 26.3 233 116-381 13-263 (297)
191 3no2_A Uncharacterized protein 99.5 6E-12 2E-16 109.6 24.4 210 129-378 6-230 (276)
192 3hrp_A Uncharacterized protein 99.5 1.7E-11 5.6E-16 113.1 28.5 247 116-389 131-408 (409)
193 1qks_A Cytochrome CD1 nitrite 99.5 2.3E-11 7.9E-16 116.3 29.1 231 129-392 168-422 (567)
194 2xdw_A Prolyl endopeptidase; a 99.5 1.7E-12 5.7E-17 128.8 22.0 204 165-392 123-369 (710)
195 3e5z_A Putative gluconolactona 99.5 1.1E-11 3.8E-16 109.2 24.9 208 159-393 20-248 (296)
196 2qc5_A Streptogramin B lactona 99.5 1.2E-10 4.2E-15 102.3 31.1 241 114-390 18-259 (300)
197 1yr2_A Prolyl oligopeptidase; 99.5 6.5E-12 2.2E-16 125.2 25.3 247 115-393 162-443 (741)
198 1qks_A Cytochrome CD1 nitrite 99.5 7E-11 2.4E-15 113.0 30.8 267 107-392 188-478 (567)
199 1xip_A Nucleoporin NUP159; bet 99.5 1.5E-12 5.2E-17 117.6 17.8 186 168-377 39-230 (388)
200 2ghs_A AGR_C_1268P; regucalcin 99.5 7.7E-11 2.6E-15 105.4 26.8 229 117-382 50-294 (326)
201 2bkl_A Prolyl endopeptidase; m 99.4 7.6E-12 2.6E-16 123.8 21.6 201 164-390 118-348 (695)
202 2qc5_A Streptogramin B lactona 99.4 5.1E-10 1.8E-14 98.3 30.2 238 115-390 61-299 (300)
203 1rwi_B Serine/threonine-protei 99.4 5.7E-11 1.9E-15 103.0 23.4 199 114-334 65-264 (270)
204 3iuj_A Prolyl endopeptidase; h 99.4 4.2E-11 1.4E-15 118.3 24.6 249 114-393 127-407 (693)
205 2mad_H Methylamine dehydrogena 99.4 9.4E-10 3.2E-14 100.0 31.0 250 109-395 60-354 (373)
206 3dsm_A Uncharacterized protein 99.4 7.3E-11 2.5E-15 105.6 23.1 224 108-355 76-321 (328)
207 3dr2_A Exported gluconolactona 99.4 1.8E-10 6.3E-15 101.9 24.5 234 111-383 40-299 (305)
208 3no2_A Uncharacterized protein 99.3 1.2E-10 4.2E-15 101.3 20.1 185 178-394 5-198 (276)
209 2qe8_A Uncharacterized protein 99.3 1.6E-10 5.6E-15 104.0 19.8 260 105-387 8-317 (343)
210 3g4e_A Regucalcin; six bladed 99.3 1.6E-09 5.6E-14 95.3 24.7 208 165-394 11-232 (297)
211 1yr2_A Prolyl oligopeptidase; 99.3 1.8E-10 6.3E-15 114.7 20.3 200 165-390 161-392 (741)
212 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 1.7E-09 5.9E-14 95.7 23.7 203 114-334 69-299 (314)
213 3sjl_D Methylamine dehydrogena 99.2 1.9E-09 6.3E-14 97.1 22.3 252 106-394 69-366 (386)
214 2ece_A 462AA long hypothetical 99.2 1.8E-08 6.2E-13 91.4 28.1 233 125-378 93-399 (462)
215 3hrp_A Uncharacterized protein 99.2 3.5E-09 1.2E-13 97.5 23.7 212 167-394 131-357 (409)
216 3c75_H MADH, methylamine dehyd 99.2 2.6E-09 9E-14 97.8 22.2 254 106-395 109-406 (426)
217 3iuj_A Prolyl endopeptidase; h 99.2 2.4E-09 8.4E-14 105.7 21.5 204 165-393 127-361 (693)
218 2ghs_A AGR_C_1268P; regucalcin 99.1 3.3E-08 1.1E-12 88.1 25.7 199 169-392 51-261 (326)
219 1mda_H Methylamine dehydrogena 99.1 4.6E-09 1.6E-13 94.5 19.1 244 107-394 57-349 (368)
220 2mad_H Methylamine dehydrogena 99.1 1.7E-07 5.9E-12 85.0 26.4 232 139-394 48-310 (373)
221 1npe_A Nidogen, entactin; glyc 99.0 7.2E-07 2.5E-11 76.9 28.2 230 138-394 10-241 (267)
222 2qe8_A Uncharacterized protein 99.0 2E-08 6.7E-13 90.3 18.1 216 167-392 17-279 (343)
223 3dr2_A Exported gluconolactona 99.0 1.3E-07 4.5E-12 83.4 22.6 206 159-393 37-269 (305)
224 1npe_A Nidogen, entactin; glyc 99.0 1.5E-06 5.2E-11 74.8 28.9 224 116-372 36-263 (267)
225 2hz6_A Endoplasmic reticulum t 99.0 7E-10 2.4E-14 100.8 7.0 179 129-335 10-193 (369)
226 1fwx_A Nitrous oxide reductase 98.9 8E-09 2.8E-13 96.9 12.9 245 126-394 100-434 (595)
227 2ece_A 462AA long hypothetical 98.9 2.2E-07 7.5E-12 84.4 21.4 213 171-391 86-352 (462)
228 2iwa_A Glutamine cyclotransfer 98.9 4.9E-07 1.7E-11 77.0 22.5 207 105-334 8-237 (266)
229 3hxj_A Pyrrolo-quinoline quino 98.9 2.9E-07 9.9E-12 81.9 21.9 218 130-393 109-326 (330)
230 3sjl_D Methylamine dehydrogena 98.9 2.1E-07 7.2E-12 83.7 19.8 248 122-394 39-323 (386)
231 2hz6_A Endoplasmic reticulum t 98.9 4.8E-10 1.7E-14 101.9 2.4 182 178-394 9-195 (369)
232 3c75_H MADH, methylamine dehyd 98.9 1.4E-07 4.9E-12 86.3 18.0 247 126-394 83-362 (426)
233 2p4o_A Hypothetical protein; p 98.9 4.5E-06 1.5E-10 73.5 27.2 241 104-379 20-277 (306)
234 3v64_C Agrin; beta propeller, 98.8 2.5E-05 8.4E-10 70.1 31.3 242 115-392 33-276 (349)
235 2fp8_A Strictosidine synthase; 98.8 7.7E-06 2.6E-10 72.5 27.6 243 116-392 19-314 (322)
236 2iwa_A Glutamine cyclotransfer 98.8 5.7E-07 1.9E-11 76.6 19.1 196 169-392 23-238 (266)
237 3v65_B Low-density lipoprotein 98.8 1.5E-05 5.2E-10 72.5 29.7 241 117-392 78-319 (386)
238 3nol_A Glutamine cyclotransfer 98.8 9.6E-07 3.3E-11 74.4 19.6 194 105-322 30-244 (262)
239 1ijq_A LDL receptor, low-densi 98.8 2.9E-05 9.9E-10 68.6 30.4 228 138-392 10-239 (316)
240 3nok_A Glutaminyl cyclase; bet 98.8 3E-06 1E-10 71.3 21.3 192 106-322 43-254 (268)
241 3mbr_X Glutamine cyclotransfer 98.7 6.6E-06 2.2E-10 68.7 21.5 194 104-322 7-223 (243)
242 3hxj_A Pyrrolo-quinoline quino 98.7 1.2E-06 4.2E-11 77.7 18.4 223 117-390 61-283 (330)
243 1kb0_A Quinohemoprotein alcoho 98.7 2.7E-06 9.4E-11 83.4 21.2 236 129-394 129-510 (677)
244 3v64_C Agrin; beta propeller, 98.7 0.00012 4.1E-09 65.6 30.3 205 113-334 70-275 (349)
245 3p5b_L Low density lipoprotein 98.6 0.00018 6E-09 65.8 31.6 230 137-392 91-321 (400)
246 1yiq_A Quinohemoprotein alcoho 98.6 4.4E-06 1.5E-10 82.1 21.6 155 129-293 122-341 (689)
247 3nol_A Glutamine cyclotransfer 98.6 2.9E-06 1E-10 71.4 17.2 192 169-378 45-243 (262)
248 3v65_B Low-density lipoprotein 98.6 5.7E-05 2E-09 68.7 26.9 204 114-334 114-318 (386)
249 3qqz_A Putative uncharacterize 98.6 7.7E-05 2.6E-09 63.1 25.6 205 162-389 22-251 (255)
250 3sov_A LRP-6, low-density lipo 98.6 0.00012 4.2E-09 64.5 27.6 228 137-393 12-240 (318)
251 3nok_A Glutaminyl cyclase; bet 98.5 1.2E-05 4E-10 67.8 18.5 192 169-378 57-253 (268)
252 1kb0_A Quinohemoprotein alcoho 98.5 9.3E-06 3.2E-10 79.6 20.6 201 170-394 246-570 (677)
253 3qqz_A Putative uncharacterize 98.5 0.00021 7.2E-09 60.4 25.6 204 113-331 24-250 (255)
254 1fwx_A Nitrous oxide reductase 98.5 5E-06 1.7E-10 78.2 16.4 202 177-391 100-361 (595)
255 3mbr_X Glutamine cyclotransfer 98.5 2.1E-05 7.1E-10 65.6 18.5 198 164-378 16-222 (243)
256 4a2l_A BT_4663, two-component 98.5 0.00031 1.1E-08 70.4 30.3 253 116-394 263-529 (795)
257 2xe4_A Oligopeptidase B; hydro 98.4 0.00021 7.3E-09 71.0 28.5 195 117-331 175-395 (751)
258 3q7m_A Lipoprotein YFGL, BAMB; 98.4 0.00014 4.7E-09 65.9 25.0 226 130-394 105-340 (376)
259 1ijq_A LDL receptor, low-densi 98.4 0.00065 2.2E-08 59.8 28.6 210 112-335 26-239 (316)
260 1yiq_A Quinohemoprotein alcoho 98.4 3.4E-05 1.2E-09 75.8 21.3 184 171-378 239-536 (689)
261 1mda_H Methylamine dehydrogena 98.4 1.1E-05 3.7E-10 72.6 16.0 192 117-334 125-346 (368)
262 3q7m_A Lipoprotein YFGL, BAMB; 98.4 0.00017 5.7E-09 65.3 24.3 221 130-394 55-299 (376)
263 1k3i_A Galactose oxidase precu 98.4 2E-05 6.8E-10 77.2 19.2 249 119-396 189-502 (656)
264 3m0c_C LDL receptor, low-densi 98.4 0.00051 1.7E-08 68.1 28.9 230 137-392 403-633 (791)
265 4a2l_A BT_4663, two-component 98.4 0.00074 2.5E-08 67.7 30.8 252 116-395 310-575 (795)
266 3sov_A LRP-6, low-density lipo 98.4 0.00091 3.1E-08 58.9 27.7 205 116-336 35-240 (318)
267 2fp8_A Strictosidine synthase; 98.3 0.00015 5.2E-09 64.1 22.6 205 167-392 19-270 (322)
268 3p5b_L Low density lipoprotein 98.3 0.0014 4.8E-08 59.8 29.3 211 112-335 108-321 (400)
269 4hw6_A Hypothetical protein, I 98.3 0.00078 2.7E-08 62.1 26.9 253 117-390 140-432 (433)
270 2p4o_A Hypothetical protein; p 98.3 0.00035 1.2E-08 61.2 23.6 200 167-392 32-243 (306)
271 3tc9_A Hypothetical hydrolase; 98.3 0.00051 1.7E-08 63.3 25.1 254 117-390 138-429 (430)
272 3kya_A Putative phosphatase; s 98.3 0.00046 1.6E-08 64.1 24.3 262 118-397 141-481 (496)
273 1n7d_A LDL receptor, low-densi 98.2 1.7E-05 5.7E-10 78.0 15.1 229 137-392 385-615 (699)
274 3v9f_A Two-component system se 98.2 0.0017 6E-08 64.8 29.9 246 116-394 313-571 (781)
275 3m0c_C LDL receptor, low-densi 98.2 0.0016 5.4E-08 64.6 28.3 210 113-335 421-633 (791)
276 3v9f_A Two-component system se 98.2 0.0013 4.4E-08 65.8 28.0 255 115-394 257-527 (781)
277 1kv9_A Type II quinohemoprotei 98.1 0.00023 7.8E-09 69.7 20.0 154 130-293 119-336 (668)
278 2xe4_A Oligopeptidase B; hydro 98.1 0.00029 9.9E-09 70.0 21.0 196 168-388 175-395 (751)
279 1n7d_A LDL receptor, low-densi 98.1 3.6E-05 1.2E-09 75.6 13.1 207 115-334 405-614 (699)
280 4a0p_A LRP6, LRP-6, low-densit 98.1 0.0061 2.1E-07 59.0 28.3 224 136-392 13-238 (628)
281 2ism_A Putative oxidoreductase 98.0 0.0089 3E-07 53.4 26.4 241 115-378 30-332 (352)
282 1k3i_A Galactose oxidase precu 97.9 0.00017 5.9E-09 70.5 15.4 235 116-380 243-530 (656)
283 3s94_A LRP-6, low-density lipo 97.9 0.0076 2.6E-07 58.2 26.0 228 136-392 16-244 (619)
284 2ad6_A Methanol dehydrogenase 97.9 0.0031 1.1E-07 60.4 22.8 54 239-293 273-338 (571)
285 4hw6_A Hypothetical protein, I 97.9 0.0024 8.1E-08 58.9 20.8 204 168-390 140-373 (433)
286 2p9w_A MAL S 1 allergenic prot 97.8 0.0069 2.4E-07 52.8 21.3 208 116-334 13-265 (334)
287 4a0p_A LRP6, LRP-6, low-densit 97.8 0.031 1.1E-06 54.0 30.0 201 116-335 37-238 (628)
288 3tc9_A Hypothetical hydrolase; 97.7 0.0011 3.9E-08 61.0 16.1 155 168-334 138-301 (430)
289 2p9w_A MAL S 1 allergenic prot 97.7 0.0064 2.2E-07 53.0 19.2 164 161-334 7-215 (334)
290 1w6s_A Methanol dehydrogenase 97.6 0.019 6.3E-07 55.2 23.2 55 238-293 278-345 (599)
291 1flg_A Protein (quinoprotein e 97.6 0.039 1.3E-06 52.9 24.7 55 238-293 291-358 (582)
292 1kv9_A Type II quinohemoprotei 97.6 0.0045 1.5E-07 60.5 18.5 154 171-334 234-488 (668)
293 2xbg_A YCF48-like protein; pho 97.5 0.042 1.4E-06 48.4 24.6 236 115-389 79-320 (327)
294 3kya_A Putative phosphatase; s 97.5 0.0039 1.3E-07 57.9 16.4 172 217-390 140-340 (496)
295 3sre_A PON1, serum paraoxonase 97.5 0.018 6.2E-07 51.1 20.0 194 168-381 51-287 (355)
296 2ad6_A Methanol dehydrogenase 97.5 0.012 4.1E-07 56.3 20.2 102 229-334 317-494 (571)
297 3s94_A LRP-6, low-density lipo 97.5 0.086 2.9E-06 50.9 30.3 161 167-334 349-510 (619)
298 3sre_A PON1, serum paraoxonase 97.5 0.048 1.6E-06 48.4 22.1 201 117-331 51-295 (355)
299 1flg_A Protein (quinoprotein e 97.4 0.017 5.9E-07 55.3 20.3 52 280-334 465-516 (582)
300 3amr_A 3-phytase; beta-propell 97.3 0.045 1.5E-06 48.1 20.0 189 181-390 42-262 (355)
301 3a9g_A Putative uncharacterize 97.3 0.08 2.7E-06 47.2 28.5 248 106-379 19-330 (354)
302 1w6s_A Methanol dehydrogenase 97.3 0.087 3E-06 50.5 23.5 147 182-336 124-344 (599)
303 3amr_A 3-phytase; beta-propell 97.3 0.069 2.4E-06 47.0 20.4 191 129-334 41-263 (355)
304 3pbp_A Nucleoporin NUP82; beta 97.3 0.048 1.6E-06 49.1 19.5 145 236-387 39-208 (452)
305 3ei3_A DNA damage-binding prot 97.2 0.2 6.9E-06 52.0 26.9 155 168-334 830-999 (1158)
306 2vpj_A Kelch-like protein 12; 97.2 0.022 7.6E-07 49.3 16.8 235 129-397 16-284 (301)
307 2xn4_A Kelch-like protein 2; s 97.2 0.03 1E-06 48.6 17.6 191 178-397 62-282 (302)
308 3ii7_A Kelch-like protein 7; p 97.2 0.036 1.2E-06 48.2 17.9 229 129-396 13-277 (306)
309 4asc_A Kelch repeat and BTB do 96.9 0.056 1.9E-06 47.2 17.2 181 130-334 7-221 (315)
310 2g8s_A Glucose/sorbosone dehyd 96.9 0.2 6.9E-06 44.5 27.0 253 115-389 17-350 (353)
311 3pbp_A Nucleoporin NUP82; beta 96.8 0.28 9.4E-06 44.3 19.8 145 176-329 30-207 (452)
312 1zgk_A Kelch-like ECH-associat 96.7 0.12 4.1E-06 44.8 17.0 231 129-396 26-292 (308)
313 2xbg_A YCF48-like protein; pho 96.4 0.44 1.5E-05 41.7 30.2 237 113-384 33-272 (327)
314 2woz_A Kelch repeat and BTB do 96.3 0.21 7E-06 43.6 16.6 102 227-334 109-231 (318)
315 2xzh_A Clathrin heavy chain 1; 96.3 0.49 1.7E-05 41.1 25.3 234 121-392 72-333 (365)
316 2ism_A Putative oxidoreductase 96.2 0.63 2.1E-05 41.3 19.7 105 167-277 31-152 (352)
317 3das_A Putative oxidoreductase 96.2 0.61 2.1E-05 41.1 26.5 242 113-378 29-325 (347)
318 1xi4_A Clathrin heavy chain; a 96.2 0.6 2E-05 48.8 20.3 229 138-394 48-292 (1630)
319 1tl2_A L10, protein (tachylect 96.2 0.41 1.4E-05 39.0 17.2 136 181-328 6-157 (236)
320 2vpj_A Kelch-like protein 12; 96.0 0.31 1.1E-05 42.0 16.0 187 129-334 64-278 (301)
321 3a9g_A Putative uncharacterize 96.0 0.79 2.7E-05 40.7 20.1 147 167-321 29-215 (354)
322 1bpo_A Protein (clathrin); cla 96.0 0.91 3.1E-05 41.1 26.8 234 120-392 70-332 (494)
323 3ii7_A Kelch-like protein 7; p 95.9 0.32 1.1E-05 42.0 15.4 184 129-334 57-272 (306)
324 2xn4_A Kelch-like protein 2; s 95.9 0.18 6E-06 43.6 13.7 184 129-334 63-276 (302)
325 1xi4_A Clathrin heavy chain; a 95.8 2.1 7.3E-05 44.9 22.6 192 122-336 72-291 (1630)
326 3ei3_A DNA damage-binding prot 95.8 2.2 7.5E-05 44.4 27.4 199 106-319 544-753 (1158)
327 2xzh_A Clathrin heavy chain 1; 95.7 0.93 3.2E-05 39.4 23.2 202 113-334 104-332 (365)
328 1cru_A Protein (soluble quinop 95.7 1.2 4.1E-05 41.0 19.0 109 167-277 27-162 (454)
329 1tl2_A L10, protein (tachylect 95.6 0.75 2.5E-05 37.5 14.9 153 116-283 41-203 (236)
330 1bpo_A Protein (clathrin); cla 95.2 1.7 5.8E-05 39.4 24.5 201 114-334 104-331 (494)
331 3ott_A Two-component system se 95.2 2.7 9.1E-05 41.6 29.6 233 115-394 21-263 (758)
332 2uvk_A YJHT; unknown function, 95.2 0.67 2.3E-05 41.0 15.3 28 370-398 316-349 (357)
333 2g8s_A Glucose/sorbosone dehyd 95.1 1.7 5.8E-05 38.5 21.0 148 168-320 19-214 (353)
334 1zgk_A Kelch-like ECH-associat 94.7 0.55 1.9E-05 40.6 13.1 144 129-291 72-241 (308)
335 1cru_A Protein (soluble quinop 94.7 2.6 8.9E-05 38.8 28.1 122 106-236 17-163 (454)
336 1sqj_A OXG-RCBH, oligoxylogluc 94.5 4.2 0.00014 40.4 22.3 157 115-280 14-190 (789)
337 4asc_A Kelch repeat and BTB do 94.4 1.2 4.2E-05 38.5 14.6 101 181-291 101-222 (315)
338 2woz_A Kelch repeat and BTB do 93.6 2.4 8.4E-05 36.6 15.0 63 227-292 158-233 (318)
339 2zwa_A Leucine carboxyl methyl 93.3 2.6 8.8E-05 41.2 15.9 191 129-334 399-635 (695)
340 3b7f_A Glycosyl hydrolase, BNR 93.0 4.8 0.00016 36.0 26.1 146 168-321 116-296 (394)
341 3das_A Putative oxidoreductase 92.4 5.4 0.00019 35.0 22.9 146 166-315 31-214 (347)
342 3b7f_A Glycosyl hydrolase, BNR 92.2 6.1 0.00021 35.3 22.3 156 167-328 177-366 (394)
343 3ott_A Two-component system se 91.5 11 0.00039 37.0 27.0 239 116-394 324-589 (758)
344 2wg3_C Hedgehog-interacting pr 90.2 6.9 0.00024 36.0 14.1 117 260-381 15-159 (463)
345 2uvk_A YJHT; unknown function, 90.1 4.4 0.00015 35.5 12.5 51 189-245 168-224 (357)
346 2cn3_A Xyloglucanase, beta-1,4 89.0 19 0.00063 35.4 23.5 114 116-237 23-153 (737)
347 2zwa_A Leucine carboxyl methyl 88.6 7.3 0.00025 38.0 13.7 111 126-249 451-579 (695)
348 2be1_A Serine/threonine-protei 86.6 16 0.00054 32.0 14.4 117 129-255 11-138 (339)
349 2be1_A Serine/threonine-protei 85.8 9.7 0.00033 33.3 11.5 112 181-299 12-138 (339)
350 3sbq_A Nitrous-oxide reductase 85.1 2.9 9.9E-05 39.2 8.0 74 259-334 323-408 (638)
351 3s25_A Hypothetical 7-bladed b 83.2 21 0.00072 30.5 14.5 86 238-334 88-176 (302)
352 1sqj_A OXG-RCBH, oligoxylogluc 82.2 42 0.0014 33.3 17.6 153 166-324 14-190 (789)
353 3qhy_B Beta-lactamase inhibito 80.4 25 0.00087 29.6 21.7 222 117-391 25-246 (282)
354 3sbq_A Nitrous-oxide reductase 77.4 6.9 0.00024 36.7 7.6 107 282-392 299-409 (638)
355 4gq2_M Nucleoporin NUP120; bet 73.7 38 0.0013 34.4 12.7 37 217-254 237-273 (950)
356 2wg3_C Hedgehog-interacting pr 72.8 57 0.002 29.8 30.4 116 116-237 14-159 (463)
357 2cn3_A Xyloglucanase, beta-1,4 72.8 74 0.0025 31.1 15.9 108 168-279 24-152 (737)
358 3s25_A Hypothetical 7-bladed b 71.1 48 0.0017 28.2 19.5 141 172-334 109-255 (302)
359 4gq2_M Nucleoporin NUP120; bet 70.1 52 0.0018 33.4 12.7 34 168-202 237-270 (950)
360 3kci_A Probable E3 ubiquitin-p 69.3 61 0.0021 28.7 26.8 249 129-391 63-345 (389)
361 3q6k_A 43.2 kDa salivary prote 64.5 77 0.0026 28.1 15.7 143 239-391 124-306 (381)
362 3a0f_A Xyloglucanase; beta-pro 64.1 1.1E+02 0.0039 30.0 22.7 160 113-281 18-203 (763)
363 3zwu_A Alkaline phosphatase PH 59.6 1.2E+02 0.0041 28.7 12.8 58 261-320 478-548 (592)
364 3q6k_A 43.2 kDa salivary prote 58.5 99 0.0034 27.4 21.7 153 215-378 151-341 (381)
365 3qhy_B Beta-lactamase inhibito 49.7 1.1E+02 0.0039 25.5 20.8 184 116-334 63-246 (282)
366 3a0f_A Xyloglucanase; beta-pro 48.7 2E+02 0.007 28.1 18.5 155 165-325 19-203 (763)
367 4fhn_B Nucleoporin NUP120; pro 41.6 45 0.0015 34.7 6.7 34 361-395 239-272 (1139)
368 4a9v_A PHOX; hydrolase, beta-p 36.5 1.2E+02 0.004 28.7 7.9 62 260-323 477-551 (592)
369 4fhn_B Nucleoporin NUP120; pro 34.6 27 0.00093 36.3 3.8 37 217-254 239-275 (1139)
370 3f7f_A Nucleoporin NUP120; nuc 33.1 45 0.0015 32.4 4.7 35 217-254 223-257 (729)
371 3kci_A Probable E3 ubiquitin-p 32.8 2.5E+02 0.0086 24.6 25.4 209 117-336 106-347 (389)
372 3f6k_A Sortilin; protein sorti 31.3 2.9E+02 0.0098 26.8 10.0 65 218-283 92-162 (685)
373 4hvt_A Ritya.17583.B, post-pro 29.4 4E+02 0.014 25.9 24.7 200 119-333 132-380 (711)
374 3mvd_K Regulator of chromosome 24.7 3.6E+02 0.012 23.8 28.0 204 168-390 76-321 (423)
375 4d9s_A UVB-resistance protein 23.1 3.9E+02 0.013 23.5 31.9 256 117-391 69-357 (406)
376 4b4p_A FEDF, F18 fimbrial adhe 20.5 1.1E+02 0.0037 20.9 3.4 56 167-225 32-87 (151)
377 4a9v_A PHOX; hydrolase, beta-p 20.0 3.7E+02 0.013 25.4 8.1 65 216-281 476-553 (592)
No 1
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=4e-63 Score=464.46 Aligned_cols=392 Identities=54% Similarity=1.000 Sum_probs=325.3
Q ss_pred hhchhhhhHHhhhhhhcChhHhhhhhcCCCCCCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCC
Q 015484 7 DASLDQVEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLP 86 (406)
Q Consensus 7 ~~~~~~~~~~~~~wk~~~~~ly~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~ 86 (406)
+.+++.++|||++||||+|+||+++++|.++||+|+++|+|+.... . +..|..+++++||++.. ..|+|+++++.+|
T Consensus 15 ~~~~~~~~~~~~~wk~n~~~~y~~~~~~~l~wp~l~~~~~p~~~~~-~-~~~~~~~~~~~GT~t~~-~~n~i~i~~~~lp 91 (430)
T 2xyi_A 15 AVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQ-D-GKDYSVHRLILGTHTSD-EQNHLLIASVQLP 91 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHEEEEEEEECSSCCSCEEECSCCEEC-T-TCSCEEEEEEEECCCSS-SCEEEEEEEEEEC
T ss_pred chhhhhhhHHHhhHhhCChHHHHHHhhcCCCCCceEEEECcccccc-c-CCCcceEEEEEEEcCCC-CCCEEEEEEEECC
Confidence 5778999999999999999999999999999999999999998765 4 56788899999999987 8999999999988
Q ss_pred CCCCCCCCC---CCC-CC----CCCCCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc--CCC
Q 015484 87 TKDSESNVG---GKN-EN----PVIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ--DDC 156 (406)
Q Consensus 87 ~~~~~~~~~---~~~-~~----~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~ 156 (406)
......+.. +++ +. ...++++....+.|.+.|++++|+|+++.+||+++.+|.|+||++........ +..
T Consensus 92 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~ 171 (430)
T 2xyi_A 92 SEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGEC 171 (430)
T ss_dssp --------------------------CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCC
T ss_pred CCccccccccccccccccccccCCCCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccC
Confidence 432211100 111 11 24578888899999999999999998668999999999999999986322111 235
Q ss_pred CCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccC-CceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe
Q 015484 157 DPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQ-DKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG 235 (406)
Q Consensus 157 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~ 235 (406)
.+...+.+|...|++++|+|++.++|++|+.||.|++|++..... ...+.....+..|...|.+++|+|.++.+|++++
T Consensus 172 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~ 251 (430)
T 2xyi_A 172 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA 251 (430)
T ss_dssp CCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEE
T ss_pred CCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEe
Confidence 678889999999999999998877999999999999999987432 2333445667789999999999998889999999
Q ss_pred cCCcEEEEECCCC---cccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcC
Q 015484 236 DDCQLMIWDLRTN---QTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDP 312 (406)
Q Consensus 236 ~dg~i~i~d~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p 312 (406)
.||.|++||++++ +.+..+..|...|++++|+|+++++|++|+.||.|++||++....++..+..|...|.+++|+|
T Consensus 252 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp 331 (430)
T 2xyi_A 252 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 331 (430)
T ss_dssp TTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECS
T ss_pred CCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECC
Confidence 9999999999987 4566677899999999999999878999999999999999987777999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 313 NHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 313 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
+++.+|++++.||.|+|||+.............++++.+++.+.+|...|.+++|+|+++++|++++.||.|+||++.++
T Consensus 332 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 332 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp SCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 99888999999999999999886554444444556678999999999999999999999988999999999999999999
Q ss_pred ccCCCcccc
Q 015484 393 IYRDDDDFL 401 (406)
Q Consensus 393 ~~~~~~~~~ 401 (406)
.+.+++...
T Consensus 412 ~~~~~~~~~ 420 (430)
T 2xyi_A 412 VYNDEEPEI 420 (430)
T ss_dssp HHCC-----
T ss_pred cccCCCccC
Confidence 887665543
No 2
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.4e-43 Score=321.20 Aligned_cols=258 Identities=20% Similarity=0.270 Sum_probs=216.8
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
....|...|++++|+|++ .|++|+.||+|+|||+.+.... ......+.+|...|++++|+|++. +|++|+.||
T Consensus 77 ~~~~~~~~v~~~~~s~d~--~l~~~s~dg~v~lWd~~~~~~~----~~~~~~~~~H~~~V~~v~~spdg~-~l~sgs~d~ 149 (344)
T 4gqb_B 77 AGVQTEAGVADLTWVGER--GILVASDSGAVELWELDENETL----IVSKFCKYEHDDIVSTVSVLSSGT-QAVSGSKDI 149 (344)
T ss_dssp EEEEESSCEEEEEEETTT--EEEEEETTSEEEEEEECTTSSC----EEEEEEEECCSSCEEEEEECTTSS-EEEEEETTS
T ss_pred eeeccCCCEEEEEEeCCC--eEEEEECCCEEEEEeccCCCce----eEeeccccCCCCCEEEEEECCCCC-EEEEEeCCC
Confidence 355688899999999986 5889999999999999874321 011234568999999999999998 999999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc--cccCCCeeEEEec
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV--KAHEKEVNYLSFN 267 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~i~~~ 267 (406)
+|++||+.+++ ++..+.+|...|.+++|+|.+..+|++++.||.|++||+++++....+ ..+...+.+++|+
T Consensus 150 ~i~iwd~~~~~------~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (344)
T 4gqb_B 150 CIKVWDLAQQV------VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWH 223 (344)
T ss_dssp CEEEEETTTTE------EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEEC
T ss_pred eEEEEECCCCc------EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeec
Confidence 99999998863 346678899999999999977789999999999999999999887766 3456679999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCC
Q 015484 268 PYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDG 347 (406)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 347 (406)
|++..+|++|+.||.|++||+++.+. +..+.+|...|++++|+|++..+|++|+.|++|+|||+..
T Consensus 224 p~~~~~l~sg~~dg~v~~wd~~~~~~-~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~------------- 289 (344)
T 4gqb_B 224 PQQSEVFVFGDENGTVSLVDTKSTSC-VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL------------- 289 (344)
T ss_dssp SSCTTEEEEEETTSEEEEEESCC--C-CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC-------------
T ss_pred CCCCcceEEeccCCcEEEEECCCCcE-EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC-------------
Confidence 98776999999999999999998665 8889999999999999999876799999999999999976
Q ss_pred CCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCC
Q 015484 348 PPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRD 396 (406)
Q Consensus 348 ~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 396 (406)
..+....+|...|++++|+|+++++|++++.|+.|++|++.++.+..
T Consensus 290 --~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~~~ 336 (344)
T 4gqb_B 290 --SELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLPA 336 (344)
T ss_dssp --CEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-----
T ss_pred --CcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCCCC
Confidence 22345689999999999999998889999999999999998876543
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.2e-41 Score=304.34 Aligned_cols=286 Identities=17% Similarity=0.325 Sum_probs=242.3
Q ss_pred CceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEE-EEeecCCc
Q 015484 39 PSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIA-QKIRVDGE 117 (406)
Q Consensus 39 p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~ 117 (406)
+..++.|.|+.... ...++.|.. ++.|.+|++.-. ..... ...+|...
T Consensus 34 ~V~~v~~~~~~~~~--------~~~l~tgs~-----D~~v~vW~~~~~------------------~~~~~~~l~gh~~~ 82 (321)
T 3ow8_A 34 AIWSVAWGTNKKEN--------SETVVTGSL-----DDLVKVWKWRDE------------------RLDLQWSLEGHQLG 82 (321)
T ss_dssp CEEEEEEC---------------CEEEEEET-----TSCEEEEEEETT------------------EEEEEEEECCCSSC
T ss_pred cEEEEEEecCCCCC--------CCEEEEEcC-----CCCEEEEECCCC------------------CeeeeeeeccCCCC
Confidence 77899998753321 125666554 367888877622 12222 34579999
Q ss_pred eeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCC
Q 015484 118 VNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVS 197 (406)
Q Consensus 118 v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~ 197 (406)
|.+++|+|++ .++++++.|++|++||+.+. .....+..|...+.+++|+|++. +|++|+.||.|++|++.
T Consensus 83 v~~~~~~~~~-~~l~s~s~D~~i~lWd~~~~--------~~~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~ 152 (321)
T 3ow8_A 83 VVSVDISHTL-PIAASSSLDAHIRLWDLENG--------KQIKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVE 152 (321)
T ss_dssp EEEEEECSSS-SEEEEEETTSEEEEEETTTT--------EEEEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETT
T ss_pred EEEEEECCCC-CEEEEEeCCCcEEEEECCCC--------CEEEEEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcC
Confidence 9999999998 58999999999999999874 33567788899999999999998 99999999999999998
Q ss_pred CccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEE
Q 015484 198 ALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATA 277 (406)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~ 277 (406)
++.. ...+..+...|.+++|+| ++++|++++.||.|++||+++++.+..+.+|...|++++|+|++. +|++|
T Consensus 153 ~~~~------~~~~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~s~ 224 (321)
T 3ow8_A 153 SGKK------EYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ-LLVTA 224 (321)
T ss_dssp TCSE------EEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSC-EEEEE
T ss_pred CCce------eEEecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCC-EEEEE
Confidence 7643 244566888999999999 789999999999999999999999999999999999999999998 99999
Q ss_pred eCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecC
Q 015484 278 SSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG 357 (406)
Q Consensus 278 ~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (406)
+.|+.|++||++.... +..+.+|...|.+++|+|+++ +|++++.|+.|+|||+.+ ..++..+.+
T Consensus 225 s~dg~i~iwd~~~~~~-~~~~~~h~~~v~~~~~sp~~~-~l~s~s~D~~v~iwd~~~--------------~~~~~~~~~ 288 (321)
T 3ow8_A 225 SDDGYIKIYDVQHANL-AGTLSGHASWVLNVAFCPDDT-HFVSSSSDKSVKVWDVGT--------------RTCVHTFFD 288 (321)
T ss_dssp CTTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTT--------------TEEEEEECC
T ss_pred cCCCeEEEEECCCcce-eEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCC--------------CEEEEEEcC
Confidence 9999999999998654 778899999999999999997 699999999999999986 467778889
Q ss_pred CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 358 HKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 358 h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
|...|.+++|+|+++ .|++++.||.|+|||+.
T Consensus 289 h~~~v~~v~~s~~g~-~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 289 HQDQVWGVKYNGNGS-KIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CSSCEEEEEECTTSS-EEEEEETTCCEEEEECC
T ss_pred CCCcEEEEEECCCCC-EEEEEeCCCeEEEEeCC
Confidence 999999999999999 68999999999999974
No 4
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.3e-41 Score=303.59 Aligned_cols=251 Identities=20% Similarity=0.313 Sum_probs=220.4
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
..+|.+.|++++|+|++ .+|++|+.||+|+|||+.+. .....+..|..+|.+++|+|++. +|++|+.|++
T Consensus 9 ~~~h~~~V~~~~fsp~~-~~l~s~~~dg~v~lWd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~-~l~s~s~d~~ 78 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTE-PWVLTTLYSGRVELWNYETQ--------VEVRSIQVTETPVRAGKFIARKN-WIIVGSDDFR 78 (304)
T ss_dssp EEEECSCEEEEEECSSS-SEEEEEETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEEEGGGT-EEEEEETTSE
T ss_pred ecCCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCC--------ceeEEeeccCCcEEEEEEeCCCC-EEEEECCCCE
Confidence 44799999999999999 68999999999999999873 33677889999999999999998 9999999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCc-ccccccccCCCeeEEEecCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ-TQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~i~~~~~ 269 (406)
|++||+.+++. +..+.+|...|.+++|+| ++.+|++|+.||.|++||++++. ....+.+|...|.+++|+|.
T Consensus 79 i~vwd~~~~~~------~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~ 151 (304)
T 2ynn_A 79 IRVFNYNTGEK------VVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK 151 (304)
T ss_dssp EEEEETTTCCE------EEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTT
T ss_pred EEEEECCCCcE------EEEEeCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCC
Confidence 99999988642 456778999999999999 67899999999999999998874 34567889999999999996
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcC--CCCCEEEEEeCCCcEEEEeCCCCCcccccccccCC
Q 015484 270 NEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDP--NHETVLASSADDRRLMVWDLNRIGDEQLELDAEDG 347 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 347 (406)
+..+|++|+.|+.|++||++...........|...+..+.|+| +++ +|++++.|+.|++||++.
T Consensus 152 ~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~D~~i~iWd~~~------------- 217 (304)
T 2ynn_A 152 DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQT------------- 217 (304)
T ss_dssp CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCC-EEEEEETTSEEEEEETTT-------------
T ss_pred CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCC-EEEEEcCCCeEEEEeCCC-------------
Confidence 5449999999999999999887665555566778999999987 444 799999999999999986
Q ss_pred CCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 348 PPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 348 ~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
..++..+.+|...|..++|+|+++ +|++|+.||.|++||+.++..
T Consensus 218 -~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~Dg~i~iWd~~~~~~ 262 (304)
T 2ynn_A 218 -KSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKV 262 (304)
T ss_dssp -TEEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCE
T ss_pred -CccceeeCCCCCCEEEEEECCCCC-EEEEEcCCCeEEEEECCCCce
Confidence 467788899999999999999999 799999999999999988754
No 5
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=6.2e-41 Score=311.78 Aligned_cols=246 Identities=22% Similarity=0.360 Sum_probs=219.3
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
...+|.+.|++++|+|++ .+|++|+.||+|+|||+... .....+.+|...|.+++|+|++. +|++|+.|+
T Consensus 145 ~l~~h~~~V~~v~~~~~~-~~l~sgs~D~~i~iwd~~~~--------~~~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~ 214 (410)
T 1vyh_C 145 TLKGHTDSVQDISFDHSG-KLLASCSADMTIKLWDFQGF--------ECIRTMHGHDHNVSSVSIMPNGD-HIVSASRDK 214 (410)
T ss_dssp EECCCSSCEEEEEECTTS-SEEEEEETTSCCCEEETTSS--------CEEECCCCCSSCEEEEEECSSSS-EEEEEETTS
T ss_pred EEeccCCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCC--------ceeEEEcCCCCCEEEEEEeCCCC-EEEEEeCCC
Confidence 345799999999999998 68999999999999999873 34667889999999999999988 999999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~ 269 (406)
+|++||+.++. ++..+.+|...|.++.|+| ++.+|++|+.||.|++||+++++....+..|...|.+++|+|+
T Consensus 215 ~i~~wd~~~~~------~~~~~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~ 287 (410)
T 1vyh_C 215 TIKMWEVQTGY------CVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 287 (410)
T ss_dssp EEEEEETTTCC------EEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCS
T ss_pred eEEEEECCCCc------EEEEEeCCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCc
Confidence 99999998864 3456778999999999998 7899999999999999999999988889899999999999996
Q ss_pred --------------------CCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEE
Q 015484 270 --------------------NEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMV 329 (406)
Q Consensus 270 --------------------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~i 329 (406)
+. +|++|+.|+.|++||++++.. +..+.+|...|.+++|+|+++ +|++|+.||.|++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~g~-~l~sgs~D~~i~iwd~~~~~~-~~~~~~h~~~v~~v~~~~~g~-~l~s~s~D~~i~v 364 (410)
T 1vyh_C 288 SSYSSISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVSTGMC-LMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRV 364 (410)
T ss_dssp CGGGGGGGCCSCC-------CC-EEEEEETTSEEEEEETTTTEE-EEEEECCSSCEEEEEECSSSS-CEEEEETTTEEEE
T ss_pred ccccchhhhccccccccCCCCC-EEEEEeCCCeEEEEECCCCce-EEEEECCCCcEEEEEEcCCCC-EEEEEeCCCeEEE
Confidence 44 899999999999999998654 788899999999999999997 5899999999999
Q ss_pred EeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 330 WDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 330 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
||+.. ..++..+.+|...|++++|+|+++ +|++|+.||.|+||++.
T Consensus 365 wd~~~--------------~~~~~~~~~h~~~v~~l~~~~~~~-~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 365 WDYKN--------------KRCMKTLNAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVWECR 410 (410)
T ss_dssp ECCTT--------------SCCCEEEECCSSCEEEEEECSSSS-CEEEEETTSEEEEEC--
T ss_pred EECCC--------------CceEEEEcCCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEeCC
Confidence 99976 345566788999999999999999 58999999999999863
No 6
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=8.7e-41 Score=310.81 Aligned_cols=250 Identities=23% Similarity=0.355 Sum_probs=225.3
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
..+|.++|++++|+|++ .+|++|+.||+|+|||+.+. .....+.+|...|.+++|+|++. +|++|+.||+
T Consensus 104 l~gh~~~V~~~~~~p~~-~~l~s~s~Dg~i~vwd~~~~--------~~~~~l~~h~~~V~~v~~~~~~~-~l~sgs~D~~ 173 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETG--------DFERTLKGHTDSVQDISFDHSGK-LLASCSADMT 173 (410)
T ss_dssp EECCSSCEEEEEECSSS-SEEEEEESSSCEEEEETTTC--------CCCEEECCCSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred ecccCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCC--------cEEEEEeccCCcEEEEEEcCCCC-EEEEEeCCCe
Confidence 45899999999999998 68999999999999999873 44678999999999999999988 9999999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~ 270 (406)
|++||+.+.. ++..+.+|...|.+++|+| ++.+|++|+.|+.|++||++++..+..+.+|...|.++.++|++
T Consensus 174 i~iwd~~~~~------~~~~~~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g 246 (410)
T 1vyh_C 174 IKLWDFQGFE------CIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG 246 (410)
T ss_dssp CCEEETTSSC------EEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred EEEEeCCCCc------eeEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCC
Confidence 9999997753 3466678999999999999 68899999999999999999999999999999999999999999
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCC-------------------CCEEEEEeCCCcEEEEe
Q 015484 271 EWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNH-------------------ETVLASSADDRRLMVWD 331 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~-------------------~~~l~s~~~dg~i~iwd 331 (406)
. +|++|+.|+.|++||+++... ...+..|...|.+++|+|++ ..+|++|+.|+.|++||
T Consensus 247 ~-~l~s~s~D~~v~vwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd 324 (410)
T 1vyh_C 247 T-LIASCSNDQTVRVWVVATKEC-KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 324 (410)
T ss_dssp S-EEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEE
T ss_pred C-EEEEEcCCCeEEEEECCCCce-eeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEE
Confidence 8 999999999999999998654 77888999999999999963 23799999999999999
Q ss_pred CCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 332 LNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
++. ..++..+.+|...|.+++|+|+++ +|++++.||.|++||+.++..
T Consensus 325 ~~~--------------~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s~D~~i~vwd~~~~~~ 372 (410)
T 1vyh_C 325 VST--------------GMCLMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYKNKRC 372 (410)
T ss_dssp TTT--------------TEEEEEEECCSSCEEEEEECSSSS-CEEEEETTTEEEEECCTTSCC
T ss_pred CCC--------------CceEEEEECCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCce
Confidence 986 466777889999999999999999 588999999999999987643
No 7
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1e-40 Score=304.51 Aligned_cols=254 Identities=19% Similarity=0.306 Sum_probs=210.4
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
....+|.+.|++++|+|++ . +++++.||+|+|||+.+.... ........+|...|++++|+|++. +|++|+.|
T Consensus 88 ~~~~~~~~~V~~~~~s~d~-~-~l~~s~dg~v~lWd~~~~~~~----~~~~~~~~~h~~~V~~v~~spdg~-~l~sgs~d 160 (357)
T 4g56_B 88 TAGVQTEAGVTDVAWVSEK-G-ILVASDSGAVELWEILEKESL----LVNKFAKYEHDDIVKTLSVFSDGT-QAVSGGKD 160 (357)
T ss_dssp SEEEECSSCEEEEEEETTT-E-EEEEETTSCEEEC------------CCCCEEECCCSSCEEEEEECSSSS-EEEEEETT
T ss_pred cccCCCCCCEEEEEEcCCC-C-EEEEECCCEEEEeecccccee----EEEeeccCCCCCCEEEEEECCCCC-EEEEEeCC
Confidence 3456799999999999987 4 566788999999999874321 122344568999999999999998 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc--cccCCCeeEEEe
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV--KAHEKEVNYLSF 266 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~i~~ 266 (406)
|+|++||++++. .+..+..|...|++++|+|.+..++++++.||.|++||+++++....+ ..+...+++++|
T Consensus 161 g~v~iwd~~~~~------~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~ 234 (357)
T 4g56_B 161 FSVKVWDLSQKA------VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTW 234 (357)
T ss_dssp SCEEEEETTTTE------EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEE
T ss_pred CeEEEEECCCCc------EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhh
Confidence 999999998763 345667899999999999977778999999999999999998876654 456778999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC
Q 015484 267 NPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED 346 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 346 (406)
+|++..+|++|+.|+.|++||+++... +..+..|...|++++|+|++..+|++|+.||+|+|||++.
T Consensus 235 sp~~~~~la~g~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~------------ 301 (357)
T 4g56_B 235 HPEKDDTFACGDETGNVSLVNIKNPDS-AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF------------ 301 (357)
T ss_dssp CTTSTTEEEEEESSSCEEEEESSCGGG-CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS------------
T ss_pred hhcccceEEEeecccceeEEECCCCcE-eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC------------
Confidence 998777999999999999999998665 7889999999999999999877899999999999999986
Q ss_pred CCCeeEEEecCCCCCeeeEEeCC-CCCcEEEEEeCCCcEEEEeCCCc
Q 015484 347 GPPELLFSHGGHKAKISDFSWNK-NDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 347 ~~~~~~~~~~~h~~~v~~~~~s~-~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.+++ ...+|...|++++|+| ++. +|+|++.||.|++|++.+.
T Consensus 302 --~~~~-~~~~H~~~V~~vafsP~d~~-~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 302 --SEVF-RDLSHRDFVTGVAWSPLDHS-KFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp --CEEE-EECCCSSCEEEEEECSSSTT-EEEEEETTSCEEEEECC--
T ss_pred --CcEe-EECCCCCCEEEEEEeCCCCC-EEEEEcCCCeEEEEECCCC
Confidence 2333 3457999999999999 566 7999999999999999764
No 8
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-40 Score=299.62 Aligned_cols=252 Identities=19% Similarity=0.302 Sum_probs=220.7
Q ss_pred EEeecCCceeEEEEcCCC---CcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec
Q 015484 110 QKIRVDGEVNRARCMPQK---PNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS 186 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 186 (406)
...+|.+.|++++|+|++ ..+|++|+.|++|+||++.... ......+.+|...|.+++|++++. ++++++
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~------~~~~~~l~gh~~~v~~~~~~~~~~-~l~s~s 99 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDER------LDLQWSLEGHQLGVVSVDISHTLP-IAASSS 99 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTE------EEEEEEECCCSSCEEEEEECSSSS-EEEEEE
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC------eeeeeeeccCCCCEEEEEECCCCC-EEEEEe
Confidence 344799999999999852 3589999999999999987632 222456889999999999999988 999999
Q ss_pred CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEe
Q 015484 187 HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSF 266 (406)
Q Consensus 187 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~ 266 (406)
.|++|++||+.+++. +..+..+...+.+++|+| ++.+|++++.||.|++||+++++....+..+...|.+++|
T Consensus 100 ~D~~i~lWd~~~~~~------~~~~~~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~ 172 (321)
T 3ow8_A 100 LDAHIRLWDLENGKQ------IKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAY 172 (321)
T ss_dssp TTSEEEEEETTTTEE------EEEEECCTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEE
T ss_pred CCCcEEEEECCCCCE------EEEEeCCCccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEE
Confidence 999999999988642 345567788899999999 7889999999999999999999988888888999999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC
Q 015484 267 NPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED 346 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 346 (406)
+|+++ +|++|+.||.|++||+++++. +..+.+|...|.+++|+|+++ +|++++.||.|++||++.
T Consensus 173 spdg~-~lasg~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~spd~~-~l~s~s~dg~i~iwd~~~------------ 237 (321)
T 3ow8_A 173 SPDGK-YLASGAIDGIINIFDIATGKL-LHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQH------------ 237 (321)
T ss_dssp CTTSS-EEEEEETTSCEEEEETTTTEE-EEEECCCSSCCCEEEECTTSC-EEEEECTTSCEEEEETTT------------
T ss_pred CCCCC-EEEEEcCCCeEEEEECCCCcE-EEEEcccCCceeEEEEcCCCC-EEEEEcCCCeEEEEECCC------------
Confidence 99999 999999999999999998654 788899999999999999997 699999999999999986
Q ss_pred CCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 347 GPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 347 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
..+...+.+|...|.+++|+|+++ +|++++.|+.|+|||+.++.
T Consensus 238 --~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~D~~v~iwd~~~~~ 281 (321)
T 3ow8_A 238 --ANLAGTLSGHASWVLNVAFCPDDT-HFVSSSSDKSVKVWDVGTRT 281 (321)
T ss_dssp --CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTE
T ss_pred --cceeEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCE
Confidence 355677889999999999999999 69999999999999998764
No 9
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.5e-40 Score=297.95 Aligned_cols=265 Identities=21% Similarity=0.377 Sum_probs=214.6
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeE
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKI 191 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 191 (406)
.+|.+.|++++|+|++ .+||+|+.|++|+||++.... ......+.+|...|.+++|+|++. +|++|+.|++|
T Consensus 58 ~~h~~~v~~~~~sp~g-~~l~s~s~D~~v~iw~~~~~~------~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v 129 (345)
T 3fm0_A 58 EGHQRTVRKVAWSPCG-NYLASASFDATTCIWKKNQDD------FECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSV 129 (345)
T ss_dssp SSCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECCC-------EEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCE
T ss_pred cccCCcEEEEEECCCC-CEEEEEECCCcEEEEEccCCC------eEEEEEccCCCCCceEEEEeCCCC-EEEEEECCCeE
Confidence 4799999999999998 689999999999999987632 233567889999999999999988 99999999999
Q ss_pred EEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc--cccccccCCCeeEEEecCC
Q 015484 192 CLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT--QQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 192 ~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~i~~~~~ 269 (406)
++||+..... ..++..+..|...|.+++|+| ++.+|++++.|+.|++||++.++. ...+.+|...|++++|+|+
T Consensus 130 ~iwd~~~~~~---~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 205 (345)
T 3fm0_A 130 WVWEVDEEDE---YECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPS 205 (345)
T ss_dssp EEEEECTTSC---EEEEEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTT
T ss_pred EEEECCCCCC---eEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCC
Confidence 9999987532 234466778999999999999 678899999999999999987753 4567889999999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCC--------------cEEecC-CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 270 NEWVLATASSDTTVALFDMRKMTVP--------------LHILSS-HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~--------------~~~~~~-h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
+. +|++|+.|+.|++||....... +..+.+ |...|.+++|+|++. .|++++.|+.|++|+...
T Consensus 206 g~-~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~vw~~~~ 283 (345)
T 3fm0_A 206 GQ-RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTG-ALATACGDDAIRVFQEDP 283 (345)
T ss_dssp SS-EEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTC-CEEEEETTSCEEEEEECT
T ss_pred CC-EEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCC-EEEEEeCCCeEEEEEeCC
Confidence 98 9999999999999997543211 223333 888999999999997 599999999999999875
Q ss_pred CCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 335 IGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
........ .......+.+|...|++++|+|+++.+|+||+.||.|++|++.++...
T Consensus 284 ~~~~~~~~-----~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 284 NSDPQQPT-----FSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp TSCTTSCC-----EEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred CCCcceee-----EEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence 32211100 001122346899999999999998668999999999999999887643
No 10
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.4e-39 Score=291.29 Aligned_cols=248 Identities=21% Similarity=0.298 Sum_probs=214.2
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
.....|...|.+++|+|++ .+|++|+.|+.|++|++..... .......+.+|...|.++.|++++ .+++++.|
T Consensus 91 ~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iw~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d 163 (340)
T 1got_B 91 HAIPLRSSWVMTCAYAPSG-NYVACGGLDNICSIYNLKTREG----NVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGD 163 (340)
T ss_dssp EEEECSSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTCSB----SCEEEEEEECCSSCEEEEEEEETT--EEEEEETT
T ss_pred eEeecCCccEEEEEECCCC-CEEEEEeCCCeEEEEECccCCC----cceeEEEecCCCccEEEEEECCCC--cEEEEECC
Confidence 3345689999999999998 6899999999999999976421 123355678999999999999865 58999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
++|++||+.++. ....+.+|...|.+++|+| ++.+|++|+.||.|++||++++.....+.+|...|++++|+|
T Consensus 164 ~~i~~wd~~~~~------~~~~~~~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p 236 (340)
T 1got_B 164 TTCALWDIETGQ------QTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236 (340)
T ss_dssp SCEEEEETTTTE------EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT
T ss_pred CcEEEEECCCCc------EEEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcC
Confidence 999999998764 2356678999999999999 688999999999999999999999889999999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEec--CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILS--SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED 346 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 346 (406)
++. +|++|+.||.|++||++.... +..+. .+...|.+++|+|+++ +|++|+.||.|++||+..
T Consensus 237 ~~~-~l~s~s~d~~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~d~~i~vwd~~~------------ 301 (340)
T 1got_B 237 NGN-AFATGSDDATCRLFDLRADQE-LMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALK------------ 301 (340)
T ss_dssp TSS-EEEEEETTSCEEEEETTTTEE-EEEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEETTT------------
T ss_pred CCC-EEEEEcCCCcEEEEECCCCcE-EEEEccCCcccceEEEEECCCCC-EEEEECCCCeEEEEEccc------------
Confidence 998 999999999999999997553 44443 2335799999999997 699999999999999876
Q ss_pred CCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 347 GPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 347 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
...+..+.+|...|.+++|+|++. +|++|+.|+.|+||+
T Consensus 302 --~~~~~~~~~h~~~v~~~~~s~dg~-~l~s~s~D~~i~iWd 340 (340)
T 1got_B 302 --ADRAGVLAGHDNRVSCLGVTDDGM-AVATGSWDSFLKIWN 340 (340)
T ss_dssp --CCEEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEEC
T ss_pred --CcEeeEeecCCCcEEEEEEcCCCC-EEEEEcCCccEEecC
Confidence 355667789999999999999999 589999999999996
No 11
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.9e-39 Score=288.62 Aligned_cols=256 Identities=20% Similarity=0.283 Sum_probs=211.1
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC--CCCeEEEecCC
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF--KEGYLVSGSHD 188 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~d 188 (406)
..+|.+.|++++|+|++ .+||+|+.|++|+||++... ...+...+.+|..+|.+++|++. +. +|++|+.|
T Consensus 5 ~~~h~~~V~~~~~s~~g-~~las~s~D~~v~iw~~~~~------~~~~~~~l~gH~~~V~~v~~s~~~~g~-~l~s~s~D 76 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYG-KRMATCSSDKTIKIFEVEGE------THKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYD 76 (297)
T ss_dssp CCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEEBCSS------CBCCCEEECCCSSCEEEEEECCGGGCS-EEEEEETT
T ss_pred ccCCcCceEEEEECCCC-CEEEEEeCCCEEEEEecCCC------CcEEEEEEccccCCeEEEEecCCCcCC-EEEEEcCC
Confidence 44799999999999999 68999999999999999752 23457789999999999999864 55 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCC-CCEEEEEecCCcEEEEECCCCcc--cccccccCCCeeEEE
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKN-ENLFGSAGDDCQLMIWDLRTNQT--QQRVKAHEKEVNYLS 265 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~i~ 265 (406)
|+|++||+.++.. ..+..+..|...|.+++|+|.. +.+|++++.||.|++||++.+.. ...+.+|...|.+++
T Consensus 77 ~~v~iWd~~~~~~----~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~ 152 (297)
T 2pm7_B 77 GKVMIWKEENGRW----SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 152 (297)
T ss_dssp TEEEEEEBSSSCB----CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEE
T ss_pred CEEEEEEcCCCce----EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEe
Confidence 9999999987532 1234556789999999999942 68999999999999999987643 345578999999999
Q ss_pred ecCCC------------CcEEEEEeCCCcEEEEeCCCCCC---CcEEecCCCCCeEEEEEcCCC--CCEEEEEeCCCcEE
Q 015484 266 FNPYN------------EWVLATASSDTTVALFDMRKMTV---PLHILSSHTEEVFQVEWDPNH--ETVLASSADDRRLM 328 (406)
Q Consensus 266 ~~~~~------------~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~h~~~v~~i~~~p~~--~~~l~s~~~dg~i~ 328 (406)
|+|++ ..+|++|+.|+.|++||++.... ....+.+|...|.+++|+|++ ..+|++++.|++|+
T Consensus 153 ~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~ 232 (297)
T 2pm7_B 153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCI 232 (297)
T ss_dssp ECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEE
T ss_pred ecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEE
Confidence 99973 23899999999999999987552 345788999999999999985 34799999999999
Q ss_pred EEeCCCCCcccccccccCCCCeeEEEe--cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 329 VWDLNRIGDEQLELDAEDGPPELLFSH--GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 329 iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
|||++..... .....+ .+|...|.+++|+|+++ +|++++.|+.|+||++.
T Consensus 233 iWd~~~~~~~-----------~~~~~~~~~~~~~~v~~~~~s~~g~-~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 233 IWTQDNEQGP-----------WKKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEESSTTSC-----------CEEEESSSSCCSSCEEEEEECSSSC-CEEEEETTSCEEEEEEC
T ss_pred EEEeCCCCCc-----------cceeeeecccCCCcEEEEEECCCCC-EEEEEcCCCcEEEEEEC
Confidence 9998762210 011112 46788899999999999 58999999999999986
No 12
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.3e-39 Score=291.94 Aligned_cols=253 Identities=15% Similarity=0.263 Sum_probs=218.7
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
....+|.+.|++++|+|++ .+|++|+.||+|+|||..+. .....+..|...|.+++|+|++. +|++|+.|
T Consensus 49 ~~l~gH~~~v~~~~~s~d~-~~l~s~s~Dg~v~iWd~~~~--------~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d 118 (340)
T 1got_B 49 RTLRGHLAKIYAMHWGTDS-RLLLSASQDGKLIIWDSYTT--------NKVHAIPLRSSWVMTCAYAPSGN-YVACGGLD 118 (340)
T ss_dssp EEECCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTC--------CEEEEEECSSSCEEEEEECTTSS-EEEEEETT
T ss_pred eeecCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCC--------CcceEeecCCccEEEEEECCCCC-EEEEEeCC
Confidence 3355799999999999998 68999999999999999873 34677888999999999999998 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
+.|++|++.+.... ......+.+|...|.++.|++ ...+++++.|+.|++||+++++.+..+.+|...|.+++|+|
T Consensus 119 ~~v~iw~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~--~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~ 194 (340)
T 1got_B 119 NICSIYNLKTREGN--VRVSRELAGHTGYLSCCRFLD--DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP 194 (340)
T ss_dssp CEEEEEETTTCSBS--CEEEEEEECCSSCEEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred CeEEEEECccCCCc--ceeEEEecCCCccEEEEEECC--CCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECC
Confidence 99999999875422 233456778999999999997 34588999999999999999999889999999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGP 348 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 348 (406)
++. +|++|+.|+.|++||+++... +..+.+|...|.+++|+|+++ +|++++.||.|++||++..
T Consensus 195 ~~~-~l~sg~~d~~v~~wd~~~~~~-~~~~~~h~~~v~~v~~~p~~~-~l~s~s~d~~v~iwd~~~~------------- 258 (340)
T 1got_B 195 DTR-LFVSGACDASAKLWDVREGMC-RQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRAD------------- 258 (340)
T ss_dssp TSS-EEEEEETTSCEEEEETTTCSE-EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTT-------------
T ss_pred CCC-EEEEEeCCCcEEEEECCCCee-EEEEcCCcCCEEEEEEcCCCC-EEEEEcCCCcEEEEECCCC-------------
Confidence 998 999999999999999998654 788999999999999999997 6999999999999999862
Q ss_pred CeeEEEe--cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 349 PELLFSH--GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 349 ~~~~~~~--~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
..+..+ ..+...|.+++|+|+++ +|++|+.||.|++||+.++.
T Consensus 259 -~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~ 303 (340)
T 1got_B 259 -QELMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKAD 303 (340)
T ss_dssp -EEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCC
T ss_pred -cEEEEEccCCcccceEEEEECCCCC-EEEEECCCCeEEEEEcccCc
Confidence 222222 33445799999999999 79999999999999987754
No 13
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.4e-38 Score=283.95 Aligned_cols=285 Identities=19% Similarity=0.280 Sum_probs=233.0
Q ss_pred CceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCCce
Q 015484 39 PSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEV 118 (406)
Q Consensus 39 p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 118 (406)
+..+++|.|+. ..++.|.. ++.|.+|++.- ...+.....|..+|
T Consensus 15 ~V~~~~fsp~~------------~~l~s~~~-----dg~v~lWd~~~-------------------~~~~~~~~~~~~~v 58 (304)
T 2ynn_A 15 RVKGIDFHPTE------------PWVLTTLY-----SGRVELWNYET-------------------QVEVRSIQVTETPV 58 (304)
T ss_dssp CEEEEEECSSS------------SEEEEEET-----TSEEEEEETTT-------------------TEEEEEEECCSSCE
T ss_pred ceEEEEECCCC------------CEEEEEcC-----CCcEEEEECCC-------------------CceeEEeeccCCcE
Confidence 56788887742 14555554 36788875331 12234445689999
Q ss_pred eEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCC
Q 015484 119 NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSA 198 (406)
Q Consensus 119 ~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~ 198 (406)
.+++|+|++ .+|++|+.|++|++||+.+. .....+.+|...|.+++|+|++. +|++|+.||+|++||+++
T Consensus 59 ~~~~~~~~~-~~l~s~s~d~~i~vwd~~~~--------~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~ 128 (304)
T 2ynn_A 59 RAGKFIARK-NWIIVGSDDFRIRVFNYNTG--------EKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWEN 128 (304)
T ss_dssp EEEEEEGGG-TEEEEEETTSEEEEEETTTC--------CEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGG
T ss_pred EEEEEeCCC-CEEEEECCCCEEEEEECCCC--------cEEEEEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCC
Confidence 999999998 68999999999999999873 44678899999999999999998 999999999999999976
Q ss_pred ccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-cccCCCeeEEEecC--CCCcEEE
Q 015484 199 LAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKEVNYLSFNP--YNEWVLA 275 (406)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~i~~~~--~~~~~l~ 275 (406)
+.. ....+.+|...|.+++|+|.++.+|++|+.||.|++||++++.....+ ..+...+..++|+| ++. +|+
T Consensus 129 ~~~-----~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~ 202 (304)
T 2ynn_A 129 NWA-----LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP-YMI 202 (304)
T ss_dssp TTE-----EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCC-EEE
T ss_pred Ccc-----hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCC-EEE
Confidence 521 235567899999999999977899999999999999999887766555 34567899999987 555 899
Q ss_pred EEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEe
Q 015484 276 TASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH 355 (406)
Q Consensus 276 ~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 355 (406)
+|+.|+.|++||+++... +..+.+|...|.+++|+|+++ +|++|+.||.|++||+.+ .+++..+
T Consensus 203 s~s~D~~i~iWd~~~~~~-~~~~~~h~~~v~~~~~~p~~~-~l~s~s~Dg~i~iWd~~~--------------~~~~~~~ 266 (304)
T 2ynn_A 203 TASDDLTIKIWDYQTKSC-VATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSST--------------YKVEKTL 266 (304)
T ss_dssp EEETTSEEEEEETTTTEE-EEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTT--------------CCEEEEE
T ss_pred EEcCCCeEEEEeCCCCcc-ceeeCCCCCCEEEEEECCCCC-EEEEEcCCCeEEEEECCC--------------Cceeeec
Confidence 999999999999998654 888999999999999999997 799999999999999986 4667777
Q ss_pred cCCCCCeeeEEeCCCCCc-EEEEEeCCCcEEEEeCCCc
Q 015484 356 GGHKAKISDFSWNKNDPW-VISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 356 ~~h~~~v~~~~~s~~~~~-~l~s~~~dg~i~iw~~~~~ 392 (406)
..|...+.+++|+|++.. ++++|+ |+.+.+|++.+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~asg~-~~g~~~~~~~~~ 303 (304)
T 2ynn_A 267 NVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGND 303 (304)
T ss_dssp CCSSSSEEEEEECTTCGGGCEEEEE-TTEEEEEECC--
T ss_pred cCCCccEEEEEECCCCCceEEEEec-CCceEEEEeccC
Confidence 889999999999998863 367766 555888887653
No 14
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3e-38 Score=287.87 Aligned_cols=251 Identities=21% Similarity=0.287 Sum_probs=215.2
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
....|...|.+++|+|++ .+||+|+.|+.+++|++....... .......+.+|...|.+++|+|++. .|++|+.||
T Consensus 101 ~~~~~~~~v~~~~~sp~g-~~lasg~~d~~i~v~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~ 176 (354)
T 2pbi_B 101 AVTMPCTWVMACAYAPSG-CAIACGGLDNKCSVYPLTFDKNEN--MAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDG 176 (354)
T ss_dssp EEECSSSCCCEEEECTTS-SEEEEESTTSEEEEEECCCCTTCC--SGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTS
T ss_pred EEecCCCCEEEEEECCCC-CEEEEeeCCCCEEEEEEecccccc--ccccceeeeccCCcEEEEEEeCCCC-EEEEEeCCC
Confidence 344688899999999999 689999999999999987532211 1233566788999999999999988 999999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCC-CCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLK-NENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
+|++||+++++ .+..+.+|...|.+++|+|. ++.+|++|+.||.|++||+++++.+..+..|...|++++|+|
T Consensus 177 ~v~lwd~~~~~------~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p 250 (354)
T 2pbi_B 177 TCALWDVESGQ------LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYP 250 (354)
T ss_dssp EEEEEETTTCC------EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred cEEEEeCCCCe------EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeC
Confidence 99999998864 34667789999999999884 358999999999999999999999989999999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC--CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSS--HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED 346 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 346 (406)
++. +|++|+.|+.|++||++.... +..+.. +...+.+++|+|+++ +|++|+.|+.|++||+..
T Consensus 251 ~~~-~l~s~s~D~~v~lwd~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~-~l~~g~~d~~i~vwd~~~------------ 315 (354)
T 2pbi_B 251 SGD-AFASGSDDATCRLYDLRADRE-VAIYSKESIIFGASSVDFSLSGR-LLFAGYNDYTINVWDVLK------------ 315 (354)
T ss_dssp TSS-EEEEEETTSCEEEEETTTTEE-EEEECCTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEETTT------------
T ss_pred CCC-EEEEEeCCCeEEEEECCCCcE-EEEEcCCCcccceeEEEEeCCCC-EEEEEECCCcEEEEECCC------------
Confidence 998 999999999999999997543 444433 335789999999997 799999999999999976
Q ss_pred CCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 347 GPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 347 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
...+..+.+|...|++++|+|+++ +|++|+.|+.|+||+
T Consensus 316 --~~~~~~l~~h~~~v~~l~~spdg~-~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 316 --GSRVSILFGHENRVSTLRVSPDGT-AFCSGSWDHTLRVWA 354 (354)
T ss_dssp --CSEEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEEC
T ss_pred --CceEEEEECCCCcEEEEEECCCCC-EEEEEcCCCCEEecC
Confidence 345567789999999999999999 589999999999996
No 15
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.7e-39 Score=288.49 Aligned_cols=267 Identities=18% Similarity=0.295 Sum_probs=214.9
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
..+|.+.|++++|+|+++.+|++|+.|++|++|++...... ...+...+.+|...|.+++|+|++. +|++|+.|++
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~---~~~~~~~~~~h~~~v~~~~~s~dg~-~l~s~s~D~~ 88 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK---FGVPVRSFKGHSHIVQDCTLTADGA-YALSASWDKT 88 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE---EEEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSE
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc---ccccceEEeCCcccEEEEEECCCCC-EEEEEeCCCE
Confidence 44799999999999987789999999999999998753221 1234667899999999999999998 9999999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~ 270 (406)
|++||+.+++ .+..+.+|...|.+++|+| ++.+|++++.|+.|++||++ ++.+..+.+|...|.++.|.|..
T Consensus 89 v~~wd~~~~~------~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~ 160 (319)
T 3frx_A 89 LRLWDVATGE------TYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNE 160 (319)
T ss_dssp EEEEETTTTE------EEEEEECCSSCEEEEEECT-TSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC-
T ss_pred EEEEECCCCC------eeEEEccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCC
Confidence 9999998864 3466778999999999999 78899999999999999997 45567778899999999999853
Q ss_pred C-----cEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc-
Q 015484 271 E-----WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA- 344 (406)
Q Consensus 271 ~-----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~- 344 (406)
. .++++++.|+.|++||++.... ...+.+|...|.+++|+|+++ +|++++.||.|+|||+............
T Consensus 161 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 238 (319)
T 3frx_A 161 KADDDSVTIISAGNDKMVKAWNLNQFQI-EADFIGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAKKAMYTLSAQD 238 (319)
T ss_dssp -----CCEEEEEETTSCEEEEETTTTEE-EEEECCCCSCEEEEEECTTSS-EEEEEETTCEEEEEETTTTEEEEEEECCS
T ss_pred CCCCCccEEEEEeCCCEEEEEECCcchh-heeecCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence 2 2799999999999999997554 677889999999999999997 6999999999999999874321111000
Q ss_pred --------cCC-----------------CCeeEEEe--------cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 345 --------EDG-----------------PPELLFSH--------GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 345 --------~~~-----------------~~~~~~~~--------~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
.++ ...++... ..|...+.+++|+|+|+ +|++|+.||.|+||++.+
T Consensus 239 ~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 239 EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ-TLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp CEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSS-EEEEEETTSCEEEEEEEE
T ss_pred cEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCC-EEEEeecCceEEEEEEee
Confidence 000 00111111 12455688999999999 689999999999999876
Q ss_pred c
Q 015484 392 S 392 (406)
Q Consensus 392 ~ 392 (406)
+
T Consensus 318 ~ 318 (319)
T 3frx_A 318 A 318 (319)
T ss_dssp C
T ss_pred c
Confidence 4
No 16
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=8.7e-40 Score=298.31 Aligned_cols=259 Identities=17% Similarity=0.263 Sum_probs=209.7
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeC------CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEe
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTS------SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSG 185 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 185 (406)
..|.+.|++++|+|+| .+||+|+. |+.|++|+....... ........+|...|.+++|+|++. ++++
T Consensus 39 ~~H~~~V~~v~fSpDG-~~las~s~d~~~~wd~~v~~~~~~~~~~~----~~~~~~~~~~~~~V~~~~~s~d~~--~l~~ 111 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDG-ALLLAASSLSSRTWGGSIWVFKDPEGAPN----ESLCTAGVQTEAGVTDVAWVSEKG--ILVA 111 (357)
T ss_dssp -CCCSEEEEEEECSSS-CEEEEEECSSSSSCCEEEEEESSCC---C----GGGCSEEEECSSCEEEEEEETTTE--EEEE
T ss_pred ccccCCEEEEEECCCC-CEEEEEcCCCCccccCeEEEEECCCCCcc----eeEecccCCCCCCEEEEEEcCCCC--EEEE
Confidence 3699999999999999 68999987 788999998764321 112334567889999999999764 6677
Q ss_pred cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEE
Q 015484 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLS 265 (406)
Q Consensus 186 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~ 265 (406)
+.||+|++||+.+++..... .....+|...|++++|+| ++++|++++.||.|++||+++++.+..+..|...|++++
T Consensus 112 s~dg~v~lWd~~~~~~~~~~--~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~ 188 (357)
T 4g56_B 112 SDSGAVELWEILEKESLLVN--KFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVA 188 (357)
T ss_dssp ETTSCEEEC--------CCC--CEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred ECCCEEEEeeccccceeEEE--eeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence 88999999999886543221 123457899999999999 788999999999999999999999999999999999999
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCCCCc-EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc
Q 015484 266 FNPYNEWVLATASSDTTVALFDMRKMTVPL-HILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 266 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 344 (406)
|+|++..++++++.||.|++||+++++... .....|...+.+++|+|++..+|++|+.|+.|++||++.
T Consensus 189 ~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~---------- 258 (357)
T 4g56_B 189 ACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN---------- 258 (357)
T ss_dssp ECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC----------
T ss_pred EccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC----------
Confidence 999987789999999999999999866422 234457788999999999877899999999999999986
Q ss_pred cCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 345 EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 345 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
...+..+.+|...|++++|+|++..+|++++.|+.|+|||+.++..
T Consensus 259 ----~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~ 304 (357)
T 4g56_B 259 ----PDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV 304 (357)
T ss_dssp ----GGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE
T ss_pred ----CcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE
Confidence 3455677889999999999999865799999999999999988754
No 17
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.3e-39 Score=299.97 Aligned_cols=263 Identities=22% Similarity=0.341 Sum_probs=216.4
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
.....|...|.+++|+|++ .+||+|+.|+.|+||++....... ........+.+|...|.++.|+|++...|++|+.|
T Consensus 102 ~~~~~h~~~v~~~~~s~~g-~~las~~~d~~v~iw~~~~~~~~~-~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D 179 (380)
T 3iz6_a 102 HAIKLHCPWVMECAFAPNG-QSVACGGLDSACSIFNLSSQADRD-GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD 179 (380)
T ss_dssp EEEECCCTTCCCCEECTTS-SEEEECCSSSCCEEEECCCCSSCC-CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTT
T ss_pred eEEecCCCCEEEEEECCCC-CEEEEeeCCCcEEEEECCCCcccc-CCccceeeccCCCcceEEEEEecCCCCEEEEECCC
Confidence 4445799999999999999 689999999999999997643211 12334566889999999999999876689999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCC-CcccccccccCCCeeEEEec
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT-NQTQQRVKAHEKEVNYLSFN 267 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~i~~~ 267 (406)
++|++||+.++.....+.. ....+|...|.+++|+|.++.+|++|+.||.|++||++. ++.+..+.+|...|++++|+
T Consensus 180 ~~i~~wd~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~ 258 (380)
T 3iz6_a 180 QTCVLWDVTTGQRISIFGS-EFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFF 258 (380)
T ss_dssp SCEEEECTTTCCEEEEECC-CSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEEC
T ss_pred CcEEEEEcCCCcEEEEeec-ccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEe
Confidence 9999999988753221110 112568889999999987889999999999999999984 56677888999999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCC-------CCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccc
Q 015484 268 PYNEWVLATASSDTTVALFDMRKMTVPLHILSSHT-------EEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL 340 (406)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~-------~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 340 (406)
|++. +|++|+.||.|++||++++.. +..+..+. ..|++++|+|+++ +|++|+.||.|++||+...
T Consensus 259 p~~~-~l~s~s~D~~i~lwd~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~----- 330 (380)
T 3iz6_a 259 PDGQ-RFGTGSDDGTCRLFDMRTGHQ-LQVYNREPDRNDNELPIVTSVAFSISGR-LLFAGYSNGDCYVWDTLLA----- 330 (380)
T ss_dssp TTSS-EEEEECSSSCEEEEETTTTEE-EEEECCCCSSSCCSSCSCSEEEECSSSS-EEEEECTTSCEEEEETTTC-----
T ss_pred cCCC-eEEEEcCCCeEEEEECCCCcE-EEEecccccccccccCceEEEEECCCCC-EEEEEECCCCEEEEECCCC-----
Confidence 9998 999999999999999998654 44444332 3489999999997 6999999999999998762
Q ss_pred cccccCCCCeeEEEe----cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 341 ELDAEDGPPELLFSH----GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 341 ~~~~~~~~~~~~~~~----~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
+.+..+ .+|...|.+++|+|++. +|++|+.|+.|+||++...
T Consensus 331 ---------~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 331 ---------EMVLNLGTLQNSHEGRISCLGLSSDGS-ALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp ---------CEEEEECCSCSSCCCCCCEEEECSSSS-EEEEECTTSCEEEEECCSS
T ss_pred ---------ceEEEEecccCCCCCceEEEEECCCCC-EEEEeeCCCCEEEEecCCC
Confidence 233333 57999999999999999 6999999999999999865
No 18
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.4e-39 Score=292.37 Aligned_cols=261 Identities=16% Similarity=0.186 Sum_probs=209.2
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccc---cCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQ---QDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
.|...|.+++|+|+| .+|++++ |+++++||........ ............|...|.+++|+|++ .|++|+.||
T Consensus 28 ~~~~~v~~~~fs~dG-~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~--~l~~~s~dg 103 (344)
T 4gqb_B 28 CMERQLEAARYRSDG-ALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER--GILVASDSG 103 (344)
T ss_dssp SCCSEEEEEEECTTS-CEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT--EEEEEETTS
T ss_pred cccCCEEEEEECCCC-CEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC--eEEEEECCC
Confidence 467889999999999 5777776 6677777632110000 00001112233466789999999964 688999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~ 269 (406)
+|++||+.+++..... .....+|...|++++|+| ++++|++|+.||.|++||+++++.+..+.+|...|++++|+|+
T Consensus 104 ~v~lWd~~~~~~~~~~--~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~ 180 (344)
T 4gqb_B 104 AVELWELDENETLIVS--KFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPH 180 (344)
T ss_dssp EEEEEEECTTSSCEEE--EEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSS
T ss_pred EEEEEeccCCCceeEe--eccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCC
Confidence 9999999987654322 234557999999999999 7899999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCcEEe--cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCC
Q 015484 270 NEWVLATASSDTTVALFDMRKMTVPLHIL--SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDG 347 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 347 (406)
+..+|++++.|+.|++||+++.+. ...+ ..|...+.+++|+|++..+|++|+.||.|+|||+++
T Consensus 181 ~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~------------- 246 (344)
T 4gqb_B 181 KDSVFLSCSEDNRILLWDTRCPKP-ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS------------- 246 (344)
T ss_dssp CTTEEEEEETTSCEEEEETTSSSC-EEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-------------
T ss_pred CCCceeeeccccccccccccccce-eeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC-------------
Confidence 977899999999999999998664 5554 345667999999998777899999999999999986
Q ss_pred CCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 348 PPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 348 ~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
.+++..+.+|...|++++|+|++..+|++|+.|+.|+|||+.++.+.
T Consensus 247 -~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~ 293 (344)
T 4gqb_B 247 -TSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF 293 (344)
T ss_dssp ---CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE
T ss_pred -CcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE
Confidence 35566778999999999999998657999999999999999887543
No 19
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2e-39 Score=298.63 Aligned_cols=259 Identities=17% Similarity=0.259 Sum_probs=218.9
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
....+|.+.|++++|+|++ .+|++|+.||+|+|||..+. .....+..|...|.+++|+|++. +|++|+.|
T Consensus 60 ~~l~gH~~~V~~~~~sp~~-~~l~s~s~D~~v~iWd~~~~--------~~~~~~~~h~~~v~~~~~s~~g~-~las~~~d 129 (380)
T 3iz6_a 60 RTLQGHSGKVYSLDWTPEK-NWIVSASQDGRLIVWNALTS--------QKTHAIKLHCPWVMECAFAPNGQ-SVACGGLD 129 (380)
T ss_dssp EEECCCSSCEEEEEECTTS-SCEEEEETTSEEEEEETTTT--------EEEEEEECCCTTCCCCEECTTSS-EEEECCSS
T ss_pred ecccccccEEEEEEEcCCC-CEEEEEeCCCeEEEEECCCC--------ccceEEecCCCCEEEEEECCCCC-EEEEeeCC
Confidence 4455899999999999998 67999999999999999873 33677889999999999999998 99999999
Q ss_pred CeEEEEeCCCccCC-ceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-----cccCCCee
Q 015484 189 NKICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-----KAHEKEVN 262 (406)
Q Consensus 189 g~i~iwd~~~~~~~-~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~v~ 262 (406)
+.|++|++...... ........+.+|...|.++.|.|.++..|++|+.|+.|++||+++++.+..+ .+|...|.
T Consensus 130 ~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~ 209 (380)
T 3iz6_a 130 SACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL 209 (380)
T ss_dssp SCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEE
T ss_pred CcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeE
Confidence 99999999764321 1122335567899999999999977788999999999999999999877655 57889999
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccc
Q 015484 263 YLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLEL 342 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 342 (406)
+++|+|.+..+|++|+.|+.|++||++....++..+.+|...|.+++|+|+++ +|++|+.||+|++||++..
T Consensus 210 ~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~lwd~~~~------- 281 (380)
T 3iz6_a 210 SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRTG------- 281 (380)
T ss_dssp EEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS-EEEEECSSSCEEEEETTTT-------
T ss_pred EEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCC-eEEEEcCCCeEEEEECCCC-------
Confidence 99998844449999999999999999976667889999999999999999997 6999999999999999873
Q ss_pred cccCCCCeeEEEecC-------CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 343 DAEDGPPELLFSHGG-------HKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 343 ~~~~~~~~~~~~~~~-------h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
..+..+.. +...|++++|+|+|+ +|++|+.||.|++||+..+.
T Consensus 282 -------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~ 331 (380)
T 3iz6_a 282 -------HQLQVYNREPDRNDNELPIVTSVAFSISGR-LLFAGYSNGDCYVWDTLLAE 331 (380)
T ss_dssp -------EEEEEECCCCSSSCCSSCSCSEEEECSSSS-EEEEECTTSCEEEEETTTCC
T ss_pred -------cEEEEecccccccccccCceEEEEECCCCC-EEEEEECCCCEEEEECCCCc
Confidence 22233222 233589999999999 69999999999999987653
No 20
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3e-38 Score=287.91 Aligned_cols=256 Identities=16% Similarity=0.233 Sum_probs=218.8
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
....+|.+.|++++|+|++ .+||+|+.||+|+|||.... .....+..|...|.+++|+|++. +|++|+.|
T Consensus 58 ~~l~gH~~~V~~~~~s~d~-~~l~s~s~Dg~v~vWd~~~~--------~~~~~~~~~~~~v~~~~~sp~g~-~lasg~~d 127 (354)
T 2pbi_B 58 RTLKGHGNKVLCMDWCKDK-RRIVSSSQDGKVIVWDSFTT--------NKEHAVTMPCTWVMACAYAPSGC-AIACGGLD 127 (354)
T ss_dssp EEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTC--------CEEEEEECSSSCCCEEEECTTSS-EEEEESTT
T ss_pred EEecCCCCeEEEEEECCCC-CEEEEEeCCCeEEEEECCCC--------CcceEEecCCCCEEEEEECCCCC-EEEEeeCC
Confidence 3455899999999999998 68999999999999998763 33566778899999999999998 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
+.+++|++..............+..|...|.+++|+| ++..|++++.||.|++||+++++.+..+.+|...|.+++|+|
T Consensus 128 ~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~ 206 (354)
T 2pbi_B 128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAP 206 (354)
T ss_dssp SEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECC
T ss_pred CCEEEEEEeccccccccccceeeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEe
Confidence 9999999876433222233456678999999999998 678889999999999999999999999999999999999988
Q ss_pred C--CCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC
Q 015484 269 Y--NEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED 346 (406)
Q Consensus 269 ~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 346 (406)
. +. +|++|+.||.|++||++++.. +..+..|...|++++|+|++. +|++++.|++|++||++..
T Consensus 207 ~~~g~-~l~sgs~Dg~v~~wd~~~~~~-~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~v~lwd~~~~----------- 272 (354)
T 2pbi_B 207 SETGN-TFVSGGCDKKAMVWDMRSGQC-VQAFETHESDVNSVRYYPSGD-AFASGSDDATCRLYDLRAD----------- 272 (354)
T ss_dssp CSSCC-EEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTT-----------
T ss_pred CCCCC-EEEEEeCCCeEEEEECCCCcE-EEEecCCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEECCCC-----------
Confidence 5 45 999999999999999998664 788899999999999999997 6999999999999999862
Q ss_pred CCCeeEEEec--CCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 347 GPPELLFSHG--GHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 347 ~~~~~~~~~~--~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
..+..+. .+...+.+++|+|+++ +|++++.|+.|++||+.++.
T Consensus 273 ---~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~ 317 (354)
T 2pbi_B 273 ---REVAIYSKESIIFGASSVDFSLSGR-LLFAGYNDYTINVWDVLKGS 317 (354)
T ss_dssp ---EEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCS
T ss_pred ---cEEEEEcCCCcccceeEEEEeCCCC-EEEEEECCCcEEEEECCCCc
Confidence 2222222 3345789999999999 79999999999999997664
No 21
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-38 Score=284.88 Aligned_cols=256 Identities=22% Similarity=0.365 Sum_probs=198.8
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
|.+.|++++|+|++ .+||+|+.|++|+||++....... ....+...+.+|...|.+++|+|++. +|++|+.|++|++
T Consensus 57 h~~~v~~v~~sp~~-~~las~s~D~~v~iw~~~~~~~~~-~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~i 133 (330)
T 2hes_X 57 HKKAIRSVAWRPHT-SLLAAGSFDSTVSIWAKEESADRT-FEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWI 133 (330)
T ss_dssp CCSCEEEEEECTTS-SEEEEEETTSCEEEEEC--------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEE
T ss_pred ccCCEEEEEECCCC-CEEEEEeCCCcEEEEEcccCcCcc-ccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEE
Confidence 99999999999998 689999999999999986421100 01233567889999999999999988 9999999999999
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC--cccccccccCCCeeEEEecCC--
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN--QTQQRVKAHEKEVNYLSFNPY-- 269 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~i~~~~~-- 269 (406)
||+..... ...++..+.+|...|.+++|+| ++.+|++++.|+.|++||++++ +.+..+.+|...|.+++|+|+
T Consensus 134 wd~~~~~~--~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 210 (330)
T 2hes_X 134 WETDESGE--EYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEG 210 (330)
T ss_dssp EECCTTCC--CCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSS
T ss_pred EeccCCCC--CeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCC
Confidence 99954321 1234566778999999999999 6889999999999999998876 567778899999999999998
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCC-------CcEEecC-CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccc
Q 015484 270 NEWVLATASSDTTVALFDMRKMTV-------PLHILSS-HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE 341 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~-------~~~~~~~-h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 341 (406)
+. +|++|+.|+.|++||++.... ....+.. |...|.+++|++++ +|++++.||.|+|||.....
T Consensus 211 ~~-~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~~----- 282 (330)
T 2hes_X 211 VF-RLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVDGE----- 282 (330)
T ss_dssp SC-EEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEETTE-----
T ss_pred ee-EEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCCCc-----
Confidence 44 899999999999999975421 1333444 89999999999765 59999999999999986411
Q ss_pred ccccCCCCeeE-EEecCCCC-CeeeEEeCC--CCCcEEEEEeCCCcEEEEeCCC
Q 015484 342 LDAEDGPPELL-FSHGGHKA-KISDFSWNK--NDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 342 ~~~~~~~~~~~-~~~~~h~~-~v~~~~~s~--~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
.... ....+|.. .|.+++|+| ++. +|++|+.||.|+||++.+
T Consensus 283 -------~~~~~~~~~~h~~~~v~~v~~~~~~~~~-~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 283 -------WKVFAKRALCHGVYEINVVKWLELNGKT-ILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp -------EEEEEEESCTTTTSCEEEEEEC-----C-CEEEEETTSEEEEEEC--
T ss_pred -------eEEEeccccccccceEEEEEEecCCCce-EEEEecCCCcEEEEEecc
Confidence 1222 22357876 899999999 566 699999999999999865
No 22
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-38 Score=289.85 Aligned_cols=272 Identities=22% Similarity=0.418 Sum_probs=217.7
Q ss_pred eEEEEEe-ecCC-ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEE
Q 015484 106 VEIAQKI-RVDG-EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLV 183 (406)
Q Consensus 106 ~~~~~~~-~h~~-~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 183 (406)
++....+ +|.+ .|++++|+|++ .+||+|+.|++|+||++....... ......+|...|.+++|+|++. +|+
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g-~~las~~~D~~i~iw~~~~~~~~~-----~~~~~~~h~~~v~~~~~sp~g~-~l~ 77 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAG-TLLASCGGDRRIRIWGTEGDSWIC-----KSVLSEGHQRTVRKVAWSPCGN-YLA 77 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTS-SCEEEEETTSCEEEEEEETTEEEE-----EEEECSSCSSCEEEEEECTTSS-EEE
T ss_pred EEEeeeecCCCCCcEEEEEECCCC-CEEEEEcCCCeEEEEEcCCCccee-----eeeeccccCCcEEEEEECCCCC-EEE
Confidence 3444444 6887 99999999999 689999999999999987632110 1122368999999999999998 999
Q ss_pred EecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc---cccccccCCC
Q 015484 184 SGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT---QQRVKAHEKE 260 (406)
Q Consensus 184 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~ 260 (406)
+|+.|++|++|++.... ..++..+.+|...|.+++|+| ++++|++++.|+.|++||++.+.. +..+..|...
T Consensus 78 s~s~D~~v~iw~~~~~~----~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~ 152 (345)
T 3fm0_A 78 SASFDATTCIWKKNQDD----FECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQD 152 (345)
T ss_dssp EEETTSCEEEEEECCC-----EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSC
T ss_pred EEECCCcEEEEEccCCC----eEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCC
Confidence 99999999999987642 234567788999999999999 789999999999999999987643 4556789999
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC-CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccc
Q 015484 261 VNYLSFNPYNEWVLATASSDTTVALFDMRKMT-VPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339 (406)
Q Consensus 261 v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 339 (406)
|.+++|+|++. +|++|+.|+.|++||.+... .....+.+|...|.+++|+|+++ +|++++.|++|+|||........
T Consensus 153 v~~~~~~p~~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~-~l~s~s~D~~v~iW~~~~~~~~~ 230 (345)
T 3fm0_A 153 VKHVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ-RLASCSDDRTVRIWRQYLPGNEQ 230 (345)
T ss_dssp EEEEEECSSSS-CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEEECTTCTT
T ss_pred eEEEEECCCCC-EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCC-EEEEEeCCCeEEEeccccCCCCc
Confidence 99999999998 89999999999999998754 23567889999999999999997 69999999999999975433221
Q ss_pred cccc-ccCCCCeeEEEecC-CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 340 LELD-AEDGPPELLFSHGG-HKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 340 ~~~~-~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.... .......++..+.+ |...|.+++|+|++. .|++++.|+.|++|+...+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~vw~~~~~ 284 (345)
T 3fm0_A 231 GVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTG-ALATACGDDAIRVFQEDPN 284 (345)
T ss_dssp CCCCC---CEEEEEEEECSSCSSCEEEEEECTTTC-CEEEEETTSCEEEEEECTT
T ss_pred cceeeccCCccceeEEecCCCCCcEEEEEEecCCC-EEEEEeCCCeEEEEEeCCC
Confidence 1100 00111233444554 888999999999999 5899999999999998765
No 23
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.8e-37 Score=279.50 Aligned_cols=310 Identities=18% Similarity=0.241 Sum_probs=226.6
Q ss_pred CceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCCce
Q 015484 39 PSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEV 118 (406)
Q Consensus 39 p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 118 (406)
+..++.|.+..... . ....++.|.. ++.|.+|++.-.. .... .........+|...|
T Consensus 23 ~V~~~~~~~s~~~~-~-----d~~~l~sgs~-----D~~v~iWd~~~~~-~~~~-----------~~~~~~~l~~h~~~V 79 (343)
T 2xzm_R 23 WVTSIVAGFSQKEN-E-----DSPVLISGSR-----DKTVMIWKLYEEE-QNGY-----------FGIPHKALTGHNHFV 79 (343)
T ss_dssp CEEEEEECCCSSTT-C-----CCCEEEEEET-----TSCEEEEEECSSC-CSSB-----------SEEEEEEECCCSSCE
T ss_pred hhhheeeEEEeecC-C-----CCCEEEEEcC-----CCEEEEEECCcCC-cccc-----------cccccchhccCCCce
Confidence 56777774422111 0 1135555554 3678888776220 0000 012233455799999
Q ss_pred eEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCC
Q 015484 119 NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSA 198 (406)
Q Consensus 119 ~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~ 198 (406)
++++|+|++ .++++|+.|++|+|||+.+. .....+.+|...|.+++|+|++. +|++|+.|++|++||+..
T Consensus 80 ~~~~~~~~~-~~l~s~s~D~~v~lwd~~~~--------~~~~~~~~h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~ 149 (343)
T 2xzm_R 80 SDLALSQEN-CFAISSSWDKTLRLWDLRTG--------TTYKRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILG 149 (343)
T ss_dssp EEEEECSST-TEEEEEETTSEEEEEETTSS--------CEEEEEECCCSCEEEEEECSSTT-EEEEEETTSCEEEEESSS
T ss_pred EEEEECCCC-CEEEEEcCCCcEEEEECCCC--------cEEEEEcCCCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccC
Confidence 999999998 68999999999999999873 34677889999999999999998 999999999999999974
Q ss_pred ccCCceeeeeeeeeccCccEEEEEeeCCC---------CCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCC
Q 015484 199 LAQDKVIDAMHVYEAHESVVEDVSWHLKN---------ENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~i~~i~~~p~~---------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~ 269 (406)
.. .........|...|.+++|+|.. ..+|++++.||.|++||. ..+....+.+|...|++++|+|+
T Consensus 150 ~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~ 224 (343)
T 2xzm_R 150 EC----KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPN 224 (343)
T ss_dssp CE----EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTT
T ss_pred Cc----eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCC
Confidence 21 11111223688899999999854 268999999999999994 45556677889999999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCC
Q 015484 270 NEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (406)
+. +|++|+.||.|++||++....+...+. +...|.+++|+|++. +++ ++.|+.|++||+......... .....+.
T Consensus 225 g~-~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~-~la-~~~d~~v~iw~~~~~~~~~~~-~~~~~~~ 299 (343)
T 2xzm_R 225 GK-YIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQ-WVA-VGTDQGVKIFNLMTQSKAPVC-TIEAEPI 299 (343)
T ss_dssp SS-EEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSC-EEE-EEESSCEEEEESSSCCSCSEE-ECCCCSG
T ss_pred CC-EEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCC-EEE-EECCCCEEEEEeCCCCCCceE-EeecCcc
Confidence 99 999999999999999976555455543 456799999999986 454 556888999999763321100 0000000
Q ss_pred eeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 350 ELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 350 ~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.......+|...|.+++|+|+++ .|++|+.||.|++|++.++
T Consensus 300 ~~~~~~~~~~~~v~~~~~sp~g~-~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 300 TKAEGQKGKNPQCTSLAWNALGK-KLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp GGBTTBCCSCCCEEEEEECSSSC-CEEEEETTSEEEEEEEEEE
T ss_pred hhhhhhcCCCCceEEEEECCCCC-eEEEecCCceEEEEEEEcc
Confidence 00011236888899999999999 5899999999999998764
No 24
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=7.3e-38 Score=305.83 Aligned_cols=264 Identities=15% Similarity=0.256 Sum_probs=218.0
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC--
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD-- 188 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-- 188 (406)
..+|.+.|++++|+|++ .+||+|+.||+|+|||+... .......+.+|...|.+++|+|+++ +|++++.+
T Consensus 55 ~~~h~~~v~~~~~spdg-~~lasg~~d~~v~lWd~~~~------~~~~~~~~~~~~~~v~~v~fs~dg~-~l~~~~~~~~ 126 (611)
T 1nr0_A 55 YTEHSHQTTVAKTSPSG-YYCASGDVHGNVRIWDTTQT------THILKTTIPVFSGPVKDISWDSESK-RIAAVGEGRE 126 (611)
T ss_dssp ECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEESSST------TCCEEEEEECSSSCEEEEEECTTSC-EEEEEECCSS
T ss_pred ecCCCCceEEEEECCCC-cEEEEEeCCCCEEEeECCCC------cceeeEeecccCCceEEEEECCCCC-EEEEEECCCC
Confidence 45899999999999999 68999999999999999752 1223457789999999999999998 88888765
Q ss_pred --CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEe
Q 015484 189 --NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSF 266 (406)
Q Consensus 189 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~ 266 (406)
+.|++||.... ...+.+|...|++++|+|++...|++++.|+.|++||.++++....+.+|...|++++|
T Consensus 127 ~~~~v~~wd~~~~--------~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~f 198 (611)
T 1nr0_A 127 RFGHVFLFDTGTS--------NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY 198 (611)
T ss_dssp CSEEEEETTTCCB--------CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEE
T ss_pred ceeEEEEeeCCCC--------cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEE
Confidence 47888885331 24467899999999999965567999999999999999988888888999999999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec-------CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccc
Q 015484 267 NPYNEWVLATASSDTTVALFDMRKMTVPLHILS-------SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 339 (406)
+|++. +|++|+.|+.|++||++++.. +..+. +|...|.+++|+|+++ +|++++.|++|++||+.+.....
T Consensus 199 spdg~-~las~s~D~~i~lwd~~~g~~-~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~~ 275 (611)
T 1nr0_A 199 NPDGS-LFASTGGDGTIVLYNGVDGTK-TGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEK 275 (611)
T ss_dssp CTTSS-EEEEEETTSCEEEEETTTCCE-EEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEE
T ss_pred CCCCC-EEEEEECCCcEEEEECCCCcE-eeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceee
Confidence 99999 999999999999999987654 55553 7999999999999997 69999999999999998643221
Q ss_pred ccccc-----------------------------cCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 340 LELDA-----------------------------EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 340 ~~~~~-----------------------------~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
..... ..........+.+|...|++++|+|+++ .|++++.|+.|++||+.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~ 354 (611)
T 1nr0_A 276 TIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDIS 354 (611)
T ss_dssp EEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT
T ss_pred eecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECC
Confidence 11000 0001234456679999999999999999 69999999999999998
Q ss_pred Cccc
Q 015484 391 DSIY 394 (406)
Q Consensus 391 ~~~~ 394 (406)
++..
T Consensus 355 ~~~~ 358 (611)
T 1nr0_A 355 TGIS 358 (611)
T ss_dssp TCCE
T ss_pred CCce
Confidence 8743
No 25
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.9e-39 Score=289.18 Aligned_cols=257 Identities=19% Similarity=0.329 Sum_probs=205.8
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC--CCCeEEEecCC
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF--KEGYLVSGSHD 188 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~d 188 (406)
..+|.+.|++++|+|++ .+||+|+.|++|+|||+.... ......+.+|...|.+++|++. +. +|++|+.|
T Consensus 9 ~~~H~~~V~~v~~s~~g-~~lasgs~D~~v~lwd~~~~~------~~~~~~l~gH~~~V~~v~~~~~~~~~-~l~s~s~D 80 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYG-TRLATCSSDRSVKIFDVRNGG------QILIADLRGHEGPVWQVAWAHPMYGN-ILASCSYD 80 (316)
T ss_dssp -----CCEEEEEECGGG-CEEEEEETTTEEEEEEEETTE------EEEEEEEECCSSCEEEEEECCGGGSS-CEEEEETT
T ss_pred cccccCeEEEeeEcCCC-CEEEEEeCCCeEEEEEecCCC------cEEEEEEcCCCccEEEEEeCCCCCCC-EEEEEECC
Confidence 34799999999999998 689999999999999997632 1235678899999999999863 55 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCC-CCEEEEEecCCcEEEEECCCCcc---cccccccCCCeeEE
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKN-ENLFGSAGDDCQLMIWDLRTNQT---QQRVKAHEKEVNYL 264 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~i 264 (406)
++|++||++++.. .....+.+|...|++++|+|+. +.+|++++.||.|++||++.+.. ...+.+|...|.++
T Consensus 81 ~~v~iWd~~~~~~----~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~ 156 (316)
T 3bg1_A 81 RKVIIWREENGTW----EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAV 156 (316)
T ss_dssp SCEEEECCSSSCC----CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCC
T ss_pred CEEEEEECCCCcc----eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceE
Confidence 9999999987532 2234567899999999999953 67899999999999999987632 34557889999999
Q ss_pred EecCCC----------------CcEEEEEeCCCcEEEEeCCCCC--CCcEEecCCCCCeEEEEEcCCC---CCEEEEEeC
Q 015484 265 SFNPYN----------------EWVLATASSDTTVALFDMRKMT--VPLHILSSHTEEVFQVEWDPNH---ETVLASSAD 323 (406)
Q Consensus 265 ~~~~~~----------------~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~h~~~v~~i~~~p~~---~~~l~s~~~ 323 (406)
+|+|+. ..+|++|+.|+.|++||++... .++..+.+|...|.+++|+|++ ..+|++++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~ 236 (316)
T 3bg1_A 157 SWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQ 236 (316)
T ss_dssp EECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEET
T ss_pred EEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcC
Confidence 999973 1289999999999999997543 2456788999999999999986 247999999
Q ss_pred CCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 324 DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 324 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
||+|+||++........ .... +.+|...|.+++|+|+++ +|++++.|+.|+||+..
T Consensus 237 D~~v~iw~~~~~~~~~~-------~~~~---~~~~~~~v~~v~~sp~g~-~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 237 DGRVFIWTCDDASSNTW-------SPKL---LHKFNDVVWHVSWSITAN-ILAVSGGDNKVTLWKES 292 (316)
T ss_dssp TCEEEEEECSSTTCCCC-------BCCE---EEECSSCEEEEEECTTTC-CEEEEESSSCEEEEEEC
T ss_pred CCeEEEEEccCccccch-------hhhh---hhcCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEEC
Confidence 99999999875211000 0112 245788999999999999 58999999999999986
No 26
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-38 Score=283.72 Aligned_cols=263 Identities=19% Similarity=0.335 Sum_probs=205.0
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceee-eC-CCCCeeEEEecCCCCCeEEEecC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRL-KG-HDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~-h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
...+|.+.|++++|+|+ +||+|+.||+|+||++.... ......+ .+ |...|.+++|+|++. +|++|+.
T Consensus 9 ~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~------~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~ 78 (330)
T 2hes_X 9 SLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDD------FTLIDVLDETAHKKAIRSVAWRPHTS-LLAAGSF 78 (330)
T ss_dssp EEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSC------CEEEEEECTTCCCSCEEEEEECTTSS-EEEEEET
T ss_pred eeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCC------eEEEEEEecCCccCCEEEEEECCCCC-EEEEEeC
Confidence 34579999999999985 79999999999999998631 1223334 34 999999999999988 9999999
Q ss_pred CCeEEEEeCCCccCC-ceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC----cccccccccCCCee
Q 015484 188 DNKICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN----QTQQRVKAHEKEVN 262 (406)
Q Consensus 188 dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~ 262 (406)
|++|++||+...... .....+..+.+|...|.+++|+| ++.+|++++.|+.|++||++.. +.+..+.+|...|.
T Consensus 79 D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~ 157 (330)
T 2hes_X 79 DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVK 157 (330)
T ss_dssp TSCEEEEEC-------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEE
T ss_pred CCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceE
Confidence 999999998653211 12234566788999999999999 6889999999999999999543 34556788999999
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCCCCC-CCcEEecCCCCCeEEEEEcCCCC-CEEEEEeCCCcEEEEeCCCCCcccc
Q 015484 263 YLSFNPYNEWVLATASSDTTVALFDMRKMT-VPLHILSSHTEEVFQVEWDPNHE-TVLASSADDRRLMVWDLNRIGDEQL 340 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~h~~~v~~i~~~p~~~-~~l~s~~~dg~i~iwd~~~~~~~~~ 340 (406)
+++|+|++. +|++|+.|+.|++||.+... .++..+.+|...|.+++|+|++. .+|++++.|++|++||+........
T Consensus 158 ~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~ 236 (330)
T 2hes_X 158 HVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ 236 (330)
T ss_dssp EEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSC
T ss_pred EEEECCCCC-EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccc
Confidence 999999998 99999999999999987642 34778899999999999999832 3699999999999999875321100
Q ss_pred cccccCCCCeeEEEecC-CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 341 ELDAEDGPPELLFSHGG-HKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 341 ~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
........+.+ |...|.+++|++++ +|++++.||.|+||++.++
T Consensus 237 ------~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 237 ------QEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp ------EEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEETT
T ss_pred ------ceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCCC
Confidence 00123334444 88999999999765 5889999999999998765
No 27
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-37 Score=295.97 Aligned_cols=327 Identities=11% Similarity=0.092 Sum_probs=233.6
Q ss_pred CCCCceEEEEecCCCCCCCCCCCceeEEEEEeecC--------------CCCCCCeEEEEEEeCCCCCCCCCCCCCCCCC
Q 015484 36 LEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHT--------------SEDFPNFLMIADAVLPTKDSESNVGGKNENP 101 (406)
Q Consensus 36 ~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~--------------~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~ 101 (406)
+..+..+++|.|+.... ...-..+++++|+.. +...++.|.||++.-. .
T Consensus 132 ~~~~V~sv~w~p~~~~~---~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~-----------~--- 194 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENT---DIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTS-----------T--- 194 (524)
T ss_dssp CCC--CCCSCEEECCCC---SSCSSEEEEEEEEEC------------------CEEEEEEEEETT-----------T---
T ss_pred CCCceeEEEecccCCCC---ccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCC-----------C---
Confidence 46788899999964221 000023677777743 1234566777765521 0
Q ss_pred CCCCeEEEE-EeecCCceeEEEEcCCC-----CcEEEEEeCCCeEEEEeCCCccccc---cCCCCCceeeeCCCCCeeEE
Q 015484 102 VIPKVEIAQ-KIRVDGEVNRARCMPQK-----PNLVGTKTSSCEVYVFDCAKQAEKQ---QDDCDPDLRLKGHDKEGYGL 172 (406)
Q Consensus 102 ~~~~~~~~~-~~~h~~~v~~i~~~p~~-----~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~~~~~h~~~v~~l 172 (406)
....... ...|.+.|++++|+|++ ..+||+++.||+|+|||+....... .....+...+.+|...|+++
T Consensus 195 --~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv 272 (524)
T 2j04_B 195 --LHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTF 272 (524)
T ss_dssp --CCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEE
T ss_pred --CCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEE
Confidence 1122222 33567999999999972 3689999999999999998643210 00123456788999999999
Q ss_pred EecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEE--EeeCCCC-CEEEEEecCCcEEEEECCCCc
Q 015484 173 SWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV--SWHLKNE-NLFGSAGDDCQLMIWDLRTNQ 249 (406)
Q Consensus 173 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i--~~~p~~~-~~l~~~~~dg~i~i~d~~~~~ 249 (406)
+|++. . .|++|+.||+|++||++++.. +...+..|...|.+| +|+| ++ .+|++++.|++|++||+++++
T Consensus 273 ~~s~~-~-~lasgs~DgtV~lWD~~~~~~-----~~~~~~~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~~ 344 (524)
T 2j04_B 273 DFLSP-T-TVVCGFKNGFVAEFDLTDPEV-----PSFYDQVHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDIA 344 (524)
T ss_dssp EESSS-S-EEEEEETTSEEEEEETTBCSS-----CSEEEECSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGHH
T ss_pred EecCC-C-eEEEEeCCCEEEEEECCCCCC-----ceEEeecccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCCC
Confidence 99984 4 899999999999999987532 224567899999999 4666 44 899999999999999999988
Q ss_pred ccccccccCC--CeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcE
Q 015484 250 TQQRVKAHEK--EVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRL 327 (406)
Q Consensus 250 ~~~~~~~~~~--~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i 327 (406)
....+.+|.. .|.+++|+|++. .+++++.|++|++||++.... +..+.+|...|++|+|+|+++ +|++|+.||+|
T Consensus 345 ~~~~~~~~~~~~~v~~v~fsp~~~-~l~s~~~d~tv~lwd~~~~~~-~~~l~gH~~~V~sva~Sp~g~-~l~Sgs~Dgtv 421 (524)
T 2j04_B 345 TTKTTVSRFRGSNLVPVVYCPQIY-SYIYSDGASSLRAVPSRAAFA-VHPLVSRETTITAIGVSRLHP-MVLAGSADGSL 421 (524)
T ss_dssp HHCEEEEECSCCSCCCEEEETTTT-EEEEECSSSEEEEEETTCTTC-CEEEEECSSCEEEEECCSSCC-BCEEEETTTEE
T ss_pred cccccccccccCcccceEeCCCcC-eEEEeCCCCcEEEEECccccc-ceeeecCCCceEEEEeCCCCC-eEEEEECCCEE
Confidence 7777766653 588999999998 799999999999999998665 677888999999999999998 59999999999
Q ss_pred EEEeCCCCCccc-c------------ccc-ccCC----------------CCeeEEEecCCCCCeeeEEeCCCCC--cEE
Q 015484 328 MVWDLNRIGDEQ-L------------ELD-AEDG----------------PPELLFSHGGHKAKISDFSWNKNDP--WVI 375 (406)
Q Consensus 328 ~iwd~~~~~~~~-~------------~~~-~~~~----------------~~~~~~~~~~h~~~v~~~~~s~~~~--~~l 375 (406)
++||+...-... . ... ..++ ...++..+.+|...|.+|+|+|+++ ..+
T Consensus 422 ~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~l 501 (524)
T 2j04_B 422 IITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCY 501 (524)
T ss_dssp ECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEE
T ss_pred EEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHH
Confidence 999975421000 0 000 0000 1334566778999999999999964 269
Q ss_pred EEEeCCCcEEEEeCCCc
Q 015484 376 SSVADDNTVQVWQMTDS 392 (406)
Q Consensus 376 ~s~~~dg~i~iw~~~~~ 392 (406)
|+|+.||.|+||++...
T Consensus 502 Asg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 502 AFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp EEECTTSEEEEEECSCC
T ss_pred HhhccCceEEEEEcccc
Confidence 99999999999998765
No 28
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.5e-37 Score=275.24 Aligned_cols=251 Identities=20% Similarity=0.334 Sum_probs=214.4
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
...+|.+.|++++|+|++ .+|++|+.||.|++|+..+. .....+.+|...|.+++|+|++. +|++|+.||
T Consensus 18 ~~~gh~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~--------~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~ 87 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDG--------KFEKTISGHKLGISDVAWSSDSN-LLVSASDDK 87 (312)
T ss_dssp EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTC--------CEEEEECCCSSCEEEEEECTTSS-EEEEEETTS
T ss_pred EEcccCCcEEEEEECCCC-CEEEEeeCCCeEEEEeCCCc--------ccchhhccCCCceEEEEEcCCCC-EEEEECCCC
Confidence 345799999999999998 68999999999999999763 33567889999999999999988 999999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~ 269 (406)
.|++||+.++. .+..+..|...|.+++|+| ++.+|++++.||.|++||+++++.+..+..|...|.+++|+|+
T Consensus 88 ~i~vwd~~~~~------~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (312)
T 4ery_A 88 TLKIWDVSSGK------CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 160 (312)
T ss_dssp EEEEEETTTCC------EEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred EEEEEECCCCc------EEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCC
Confidence 99999998764 3456678999999999999 6889999999999999999999988888889999999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCC
Q 015484 270 NEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (406)
+. +|++++.||.|++||+++..........+...+..++|+|+++ +|++++.||.|++||++. .
T Consensus 161 ~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~--------------~ 224 (312)
T 4ery_A 161 GS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDYSK--------------G 224 (312)
T ss_dssp SS-EEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSS-EEEEEETTTEEEEEETTT--------------T
T ss_pred CC-EEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCC--------------C
Confidence 98 9999999999999999986653333456677899999999997 699999999999999986 3
Q ss_pred eeEEEecCCCCCeee--EEeC-CCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 350 ELLFSHGGHKAKISD--FSWN-KNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 350 ~~~~~~~~h~~~v~~--~~~s-~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
..+..+.+|...+.. ..++ +++. +|++|+.||.|++|++.++..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~ 271 (312)
T 4ery_A 225 KCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTKEI 271 (312)
T ss_dssp EEEEEECSSCCSSSCCCEEEECSSSC-EEEECCTTSCEEEEETTTCCE
T ss_pred cEEEEEEecCCceEEEEEEEEeCCCc-EEEEECCCCEEEEEECCCchh
Confidence 556666777655433 3444 4566 799999999999999987753
No 29
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.7e-37 Score=278.77 Aligned_cols=274 Identities=18% Similarity=0.276 Sum_probs=212.8
Q ss_pred CeEEEE-EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEE
Q 015484 105 KVEIAQ-KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLV 183 (406)
Q Consensus 105 ~~~~~~-~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 183 (406)
++.+.. ..+|.+.|++|+|+|+++.+||+|+.||+|+|||+...... ...+...+.+|...|.+++|+|++. +|+
T Consensus 27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~---~~~~~~~l~~h~~~V~~~~~s~dg~-~l~ 102 (340)
T 4aow_A 27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN---YGIPQRALRGHSHFVSDVVISSDGQ-FAL 102 (340)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC---SEEEEEEECCCSSCEEEEEECTTSS-EEE
T ss_pred ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc---cceeeEEEeCCCCCEEEEEECCCCC-EEE
Confidence 344443 44799999999999987689999999999999999874321 1234567889999999999999998 999
Q ss_pred EecCCCeEEEEeCCCccCCce-------------------------------------eeeeeeeeccCccEEEEEeeCC
Q 015484 184 SGSHDNKICLWDVSALAQDKV-------------------------------------IDAMHVYEAHESVVEDVSWHLK 226 (406)
Q Consensus 184 s~~~dg~i~iwd~~~~~~~~~-------------------------------------~~~~~~~~~~~~~i~~i~~~p~ 226 (406)
+|+.|+.|++|+......... .........|...+..++|++.
T Consensus 103 s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 182 (340)
T 4aow_A 103 SGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN 182 (340)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSC
T ss_pred EEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccC
Confidence 999999999999876321000 0011223457788999999875
Q ss_pred C-CCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCe
Q 015484 227 N-ENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEV 305 (406)
Q Consensus 227 ~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v 305 (406)
. ..++++++.|+.|++||+++++.+..+.+|...|++++|+|++. +|++|+.||.|++||+++... +..+.. ...|
T Consensus 183 ~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~Dg~i~iwd~~~~~~-~~~~~~-~~~v 259 (340)
T 4aow_A 183 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLWDLNEGKH-LYTLDG-GDII 259 (340)
T ss_dssp SSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTCEEEEEETTTTEE-EEEEEC-SSCE
T ss_pred CCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCC-EEEEEeCCCeEEEEEeccCce-eeeecC-CceE
Confidence 4 45678999999999999999999989999999999999999998 999999999999999998654 555554 5689
Q ss_pred EEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEE
Q 015484 306 FQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQ 385 (406)
Q Consensus 306 ~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~ 385 (406)
.++.|+|++. +++++.|+.|++||++........ ..........+|...|++++|+|+++ +|++|+.||.|+
T Consensus 260 ~~~~~~~~~~--~~~~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~Dg~v~ 331 (340)
T 4aow_A 260 NALCFSPNRY--WLCAATGPSIKIWDLEGKIIVDEL-----KQEVISTSSKAEPPQCTSLAWSADGQ-TLFAGYTDNLVR 331 (340)
T ss_dssp EEEEECSSSS--EEEEEETTEEEEEETTTTEEEEEE-----CCC-------CCCCCEEEEEECTTSS-EEEEEETTSCEE
T ss_pred EeeecCCCCc--eeeccCCCEEEEEECCCCeEEEec-----cccceeeeccCCCCCEEEEEECCCCC-EEEEEeCCCEEE
Confidence 9999999874 567777999999999863221111 01122334467899999999999999 689999999999
Q ss_pred EEeCCCcc
Q 015484 386 VWQMTDSI 393 (406)
Q Consensus 386 iw~~~~~~ 393 (406)
||++.+|.
T Consensus 332 iW~~~tGt 339 (340)
T 4aow_A 332 VWQVTIGT 339 (340)
T ss_dssp EEEEEC--
T ss_pred EEeCCCcC
Confidence 99998873
No 30
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-38 Score=293.70 Aligned_cols=309 Identities=16% Similarity=0.308 Sum_probs=245.3
Q ss_pred CceEEEEecCCCCCCCCCCCceeEEEEEeecCCC-----CCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEee
Q 015484 39 PSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSE-----DFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIR 113 (406)
Q Consensus 39 p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~-----~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (406)
+..++.|.|+.. ..++.|+.... ..++.|.++++.... ..+....+.
T Consensus 14 ~v~~~~~sp~g~-----------~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~-----------------~~~~~~~~~ 65 (416)
T 2pm9_A 14 RTATFAWSHDKI-----------PLLVSGTVSGTVDANFSTDSSLELWSLLAAD-----------------SEKPIASLQ 65 (416)
T ss_dssp ESCBCCBCSSSS-----------CEEEEBCBSSCCCSSCCCCCCCEEEESSSGG-----------------GCSCSCCCC
T ss_pred hcceEeeCCCCC-----------CEEEEEecCcccccccCCCCeEEEEEccCCC-----------------CCcEEEEEe
Confidence 345677877421 24666654321 455778888655220 001122456
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
|.+.|++++|+|++ .+|++|+.||.|++|++..... .......+.+|...|.+++|+|++..+|++++.||.|++
T Consensus 66 ~~~~v~~~~~s~~~-~~l~~~~~dg~v~vw~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~i 140 (416)
T 2pm9_A 66 VDSKFNDLDWSHNN-KIIAGALDNGSLELYSTNEANN----AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFI 140 (416)
T ss_dssp CSSCEEEEEECSSS-SCEEEEESSSCEEEECCSSTTS----CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEB
T ss_pred cCCceEEEEECCCC-CeEEEEccCCeEEEeecccccc----cccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEE
Confidence 89999999999998 5899999999999999987321 123466778899999999999984449999999999999
Q ss_pred EeCCCccCCc---eeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccccc------CCCeeEE
Q 015484 194 WDVSALAQDK---VIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAH------EKEVNYL 264 (406)
Q Consensus 194 wd~~~~~~~~---~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~v~~i 264 (406)
||+.+..... ..........|...|.+++|+|+++.+|++++.||.|++||+++++.+..+..+ ...|.++
T Consensus 141 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 220 (416)
T 2pm9_A 141 WDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVV 220 (416)
T ss_dssp CBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEE
T ss_pred EECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEE
Confidence 9998865110 011112345688999999999966899999999999999999999887777655 7889999
Q ss_pred EecCCCCcEEEEEeCCC---cEEEEeCCCCCCCcEEec-CCCCCeEEEEEcC-CCCCEEEEEeCCCcEEEEeCCCCCccc
Q 015484 265 SFNPYNEWVLATASSDT---TVALFDMRKMTVPLHILS-SHTEEVFQVEWDP-NHETVLASSADDRRLMVWDLNRIGDEQ 339 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~-~h~~~v~~i~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~ 339 (406)
+|+|++..++++++.|+ .|++||+++...++..+. .|...|.+++|+| +++ +|++++.||.|++||+..
T Consensus 221 ~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~l~s~~~dg~v~~wd~~~----- 294 (416)
T 2pm9_A 221 EWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEH-LLLSSGRDNTVLLWNPES----- 294 (416)
T ss_dssp EECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSS-CEEEEESSSEEEEECSSS-----
T ss_pred EECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCC-eEEEEeCCCCEEEeeCCC-----
Confidence 99999866999999998 999999998766788888 8999999999999 665 699999999999999986
Q ss_pred ccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
...+..+.+|...|.+++|+|+++.+|++++.|+.|++|++.+....
T Consensus 295 ---------~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 295 ---------AEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT 341 (416)
T ss_dssp ---------CCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred ---------CccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCC
Confidence 35667778899999999999999448999999999999999887543
No 31
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=7.9e-38 Score=293.29 Aligned_cols=270 Identities=14% Similarity=0.243 Sum_probs=207.7
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
..+|...|++|+|+|.++.+||+|+.||.|+|||+.... ......+.+|.+.|++|+|+|.+..+|++|+.||+
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~------~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~ 188 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD------KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT 188 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS------CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC------ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence 457899999999999777899999999999999998732 23345567899999999999865449999999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~ 270 (406)
|++||++... +........+...+.+++|+| ++.+|++|+.||.|++||++. +.+..+.+|...|++++|+|++
T Consensus 189 v~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~ 262 (435)
T 4e54_B 189 TRLQDFKGNI----LRVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCC 262 (435)
T ss_dssp EEEEETTSCE----EEEEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTC
T ss_pred EEEeeccCCc----eeEEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCC
Confidence 9999997642 222222233445678999999 789999999999999999874 5567788899999999999999
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCC--cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccccc-----
Q 015484 271 EWVLATASSDTTVALFDMRKMTVP--LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELD----- 343 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----- 343 (406)
+.+|++|+.|+.|++||+++.... +....+|...|++++|+|++. +|++++.||.|+|||+...........
T Consensus 263 ~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~ 341 (435)
T 4e54_B 263 DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA-RLLTTDQKSEIRVYSASQWDCPLGLIPHPHRH 341 (435)
T ss_dssp SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSS-EEEEEESSSCEEEEESSSSSSEEEECCCCCCC
T ss_pred ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCC-eeEEEcCCCEEEEEECCCCccceEEecccccc
Confidence 889999999999999999876532 334467999999999999997 699999999999999976432111000
Q ss_pred ----------------------cc----------C---------CCCeeEEE-ecCCCCCeeeE-EeCCCCCcEEEEEeC
Q 015484 344 ----------------------AE----------D---------GPPELLFS-HGGHKAKISDF-SWNKNDPWVISSVAD 380 (406)
Q Consensus 344 ----------------------~~----------~---------~~~~~~~~-~~~h~~~v~~~-~~s~~~~~~l~s~~~ 380 (406)
.. + ....++.. ..+|...|.++ +|+|+|. +|++|+
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~-~lasg~- 419 (435)
T 4e54_B 342 FQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGD-TLASAM- 419 (435)
T ss_dssp CSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSS-CEEEEC-
T ss_pred cccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCC-EEEEEc-
Confidence 00 0 01122222 24677788887 6999999 577765
Q ss_pred CCcEEEEeCCCcccC
Q 015484 381 DNTVQVWQMTDSIYR 395 (406)
Q Consensus 381 dg~i~iw~~~~~~~~ 395 (406)
|+.|+||++.++..+
T Consensus 420 d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 420 GYHILIWSQQEARTR 434 (435)
T ss_dssp SSEEEECCCC-----
T ss_pred CCcEEEEECCcCeee
Confidence 889999999987643
No 32
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.9e-36 Score=271.22 Aligned_cols=247 Identities=21% Similarity=0.388 Sum_probs=210.5
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
...+|...|.+++|+|++ .+|++|+.||.|++||+.+. .....+.+|...|.+++|+|++. +|++|+.||
T Consensus 60 ~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~ 129 (312)
T 4ery_A 60 TISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDVSSG--------KCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDE 129 (312)
T ss_dssp EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTC--------CEEEEEECCSSCEEEEEECSSSS-EEEEEETTS
T ss_pred hhccCCCceEEEEEcCCC-CEEEEECCCCEEEEEECCCC--------cEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCC
Confidence 345799999999999998 68999999999999999873 44677889999999999999988 999999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-cccCCCeeEEEecC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKEVNYLSFNP 268 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~i~~~~ 268 (406)
.|++||++++. .+..+..|..+|.+++|+| ++.+|++++.||.|++||+++++.+..+ ..+...+..++|+|
T Consensus 130 ~i~iwd~~~~~------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (312)
T 4ery_A 130 SVRIWDVKTGK------CLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 202 (312)
T ss_dssp CEEEEETTTCC------EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECT
T ss_pred cEEEEECCCCE------EEEEecCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECC
Confidence 99999998764 2355677889999999999 6889999999999999999998876665 44567899999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeE--EEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVF--QVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED 346 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~--~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 346 (406)
+++ +|++++.||.|++||+++... +..+.+|...+. ...+++.+..+|++|+.||.|++||+..
T Consensus 203 ~~~-~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~------------ 268 (312)
T 4ery_A 203 NGK-YILAATLDNTLKLWDYSKGKC-LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT------------ 268 (312)
T ss_dssp TSS-EEEEEETTTEEEEEETTTTEE-EEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTT------------
T ss_pred CCC-EEEEEcCCCeEEEEECCCCcE-EEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCC------------
Confidence 999 899999999999999998654 677777766433 2345544445799999999999999986
Q ss_pred CCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEe--CCCcEEEEeCC
Q 015484 347 GPPELLFSHGGHKAKISDFSWNKNDPWVISSVA--DDNTVQVWQMT 390 (406)
Q Consensus 347 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~--~dg~i~iw~~~ 390 (406)
..++..+.+|...|.+++|+|+++ ++++++ .|+.|++|+..
T Consensus 269 --~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 269 --KEIVQKLQGHTDVVISTACHPTEN-IIASAALENDKTIKLWKSD 311 (312)
T ss_dssp --CCEEEEECCCSSCEEEEEECSSSS-EEEEEECTTTCCEEEEECC
T ss_pred --chhhhhhhccCCcEEEEeecCcCC-ceEEEEccCCccEEEecCC
Confidence 466778889999999999999999 688876 69999999864
No 33
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6.4e-37 Score=283.25 Aligned_cols=263 Identities=21% Similarity=0.320 Sum_probs=209.8
Q ss_pred eEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC------------------CCC
Q 015484 106 VEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG------------------HDK 167 (406)
Q Consensus 106 ~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~------------------h~~ 167 (406)
.++.+.++|.+.|++++|+|++ .+||+|+ ++.++||++.+... ...+.. +..
T Consensus 55 ~~~~~~~~h~~~V~~v~fspdg-~~la~g~-~~~v~i~~~~~g~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~ 124 (393)
T 1erj_A 55 VELHKSLDHTSVVCCVKFSNDG-EYLATGC-NKTTQVYRVSDGSL--------VARLSDDSAANKDPENLNTSSSPSSDL 124 (393)
T ss_dssp EEEEEEEECSSCCCEEEECTTS-SEEEEEC-BSCEEEEETTTCCE--------EEEECC-----------------CCCC
T ss_pred ceeEEecCCCCEEEEEEECCCC-CEEEEEc-CCcEEEEEecCCCE--------EEEecCccccccccccccccccCCCce
Confidence 3455667899999999999999 5788876 68899999987432 222222 233
Q ss_pred CeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCC
Q 015484 168 EGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT 247 (406)
Q Consensus 168 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~ 247 (406)
.|.+++|+|++. +|++|+.||.|++||+.+++ ....+.+|...|.+++|+| ++..|++++.|+.|++||+++
T Consensus 125 ~v~~v~~s~dg~-~l~s~~~d~~i~iwd~~~~~------~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~ 196 (393)
T 1erj_A 125 YIRSVCFSPDGK-FLATGAEDRLIRIWDIENRK------IVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRT 196 (393)
T ss_dssp BEEEEEECTTSS-EEEEEETTSCEEEEETTTTE------EEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT
T ss_pred eEEEEEECCCCC-EEEEEcCCCeEEEEECCCCc------EEEEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEEECCC
Confidence 599999999998 99999999999999998753 2356678999999999999 678899999999999999999
Q ss_pred CcccccccccCCCeeEEEecC-CCCcEEEEEeCCCcEEEEeCCCCCCCcEEe-------cCCCCCeEEEEEcCCCCCEEE
Q 015484 248 NQTQQRVKAHEKEVNYLSFNP-YNEWVLATASSDTTVALFDMRKMTVPLHIL-------SSHTEEVFQVEWDPNHETVLA 319 (406)
Q Consensus 248 ~~~~~~~~~~~~~v~~i~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------~~h~~~v~~i~~~p~~~~~l~ 319 (406)
++....+. +...+.+++|+| ++. +|++|+.||.|++||+++... +..+ .+|...|.+++|+|+++ +|+
T Consensus 197 ~~~~~~~~-~~~~v~~~~~~~~~~~-~l~~~s~d~~v~iwd~~~~~~-~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~ 272 (393)
T 1erj_A 197 GQCSLTLS-IEDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSETGFL-VERLDSENESGTGHKDSVYSVVFTRDGQ-SVV 272 (393)
T ss_dssp TEEEEEEE-CSSCEEEEEECSTTCC-EEEEEETTSCEEEEETTTCCE-EEEEC------CCCSSCEEEEEECTTSS-EEE
T ss_pred CeeEEEEE-cCCCcEEEEEECCCCC-EEEEEcCCCcEEEEECCCCcE-EEeecccccCCCCCCCCEEEEEECCCCC-EEE
Confidence 88776665 567799999999 666 999999999999999987653 4443 57899999999999997 699
Q ss_pred EEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 320 SSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 320 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
+++.||.|++||++.......... .....+...+.+|...|.+++|+|++. +|++|+.|+.|++||+.++.
T Consensus 273 s~s~d~~v~~wd~~~~~~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~iwd~~~~~ 343 (393)
T 1erj_A 273 SGSLDRSVKLWNLQNANNKSDSKT--PNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKKSGN 343 (393)
T ss_dssp EEETTSEEEEEEC-----------------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEETTTCC
T ss_pred EEeCCCEEEEEECCCCCCcccccC--CCCCcceEEEecccCcEEEEEECCCCC-EEEEEeCCCeEEEEECCCCe
Confidence 999999999999986432211100 111245566789999999999999999 68999999999999998764
No 34
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.8e-37 Score=284.76 Aligned_cols=244 Identities=20% Similarity=0.339 Sum_probs=207.9
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
+...|++++|+|++ .+||+|+.||.|+|||+.+. .....+.+|...|.+++|+|++. +|++|+.|++|++
T Consensus 122 ~~~~v~~v~~s~dg-~~l~s~~~d~~i~iwd~~~~--------~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~v~i 191 (393)
T 1erj_A 122 SDLYIRSVCFSPDG-KFLATGAEDRLIRIWDIENR--------KIVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRI 191 (393)
T ss_dssp CCCBEEEEEECTTS-SEEEEEETTSCEEEEETTTT--------EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEE
T ss_pred CceeEEEEEECCCC-CEEEEEcCCCeEEEEECCCC--------cEEEEEccCCCCEEEEEEcCCCC-EEEEecCCCcEEE
Confidence 44569999999999 68999999999999999873 33667889999999999999998 9999999999999
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-------cccCCCeeEEEe
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-------KAHEKEVNYLSF 266 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~v~~i~~ 266 (406)
||+.++... ..+ .+...+.+++|+|.++.+|++++.||.|++||++++..+..+ .+|...|.+++|
T Consensus 192 wd~~~~~~~------~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 264 (393)
T 1erj_A 192 WDLRTGQCS------LTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF 264 (393)
T ss_dssp EETTTTEEE------EEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEE
T ss_pred EECCCCeeE------EEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEE
Confidence 999876432 222 356789999999978899999999999999999998776555 568899999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCC-----------CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 015484 267 NPYNEWVLATASSDTTVALFDMRKMTV-----------PLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI 335 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~-----------~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~ 335 (406)
+|++. +|++|+.|+.|++||++.... ....+.+|...|.+++|+|++. +|++|+.||.|++||+..
T Consensus 265 ~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~iwd~~~- 341 (393)
T 1erj_A 265 TRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKKS- 341 (393)
T ss_dssp CTTSS-EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEETTT-
T ss_pred CCCCC-EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCC-EEEEEeCCCeEEEEECCC-
Confidence 99998 999999999999999986432 2346778999999999999997 699999999999999986
Q ss_pred CcccccccccCCCCeeEEEecCCCCCeeeEEeCC------CCCcEEEEEeCCCcEEEEeCCC
Q 015484 336 GDEQLELDAEDGPPELLFSHGGHKAKISDFSWNK------NDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~------~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
...+..+.+|...|.+++|++ ++. +|++|+.||.|+||++..
T Consensus 342 -------------~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~-~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 342 -------------GNPLLMLQGHRNSVISVAVANGSSLGPEYN-VFATGSGDCKARIWKYKK 389 (393)
T ss_dssp -------------CCEEEEEECCSSCEEEEEECSSCTTCTTCE-EEEEEETTSEEEEEEEEE
T ss_pred -------------CeEEEEECCCCCCEEEEEecCCcCcCCCCC-EEEEECCCCcEEECcccc
Confidence 355677889999999999986 566 799999999999999864
No 35
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-38 Score=292.18 Aligned_cols=342 Identities=15% Similarity=0.216 Sum_probs=245.1
Q ss_pred HhhhhhhcChhHhhhhhcCCCCCCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCC
Q 015484 16 EFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVG 95 (406)
Q Consensus 16 ~~~~wk~~~~~ly~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~ 95 (406)
..++|.-...-....+......-+..++.|.|+.. .++.|.. ++.|.++++.-. .
T Consensus 46 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~------------~l~~~~~-----dg~v~vw~~~~~------~-- 100 (416)
T 2pm9_A 46 SLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNK------------IIAGALD-----NGSLELYSTNEA------N-- 100 (416)
T ss_dssp CCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSS------------CEEEEES-----SSCEEEECCSST------T--
T ss_pred eEEEEEccCCCCCcEEEEEecCCceEEEEECCCCC------------eEEEEcc-----CCeEEEeecccc------c--
Confidence 35667655443222233333445778999977421 4555554 356777754421 0
Q ss_pred CCCCCCCCCCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccC-CCCCceeeeCCCCCeeEEEe
Q 015484 96 GKNENPVIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQD-DCDPDLRLKGHDKEGYGLSW 174 (406)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~ 174 (406)
. +.-......+|.+.|++++|+|++..+|++++.||.|++||+......... .......+..|...|.+++|
T Consensus 101 -~------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 173 (416)
T 2pm9_A 101 -N------AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAW 173 (416)
T ss_dssp -S------CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEE
T ss_pred -c------cccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEe
Confidence 0 111334455799999999999985578999999999999999875311000 01112234679999999999
Q ss_pred cCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC---cEEEEECCCC-cc
Q 015484 175 SPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC---QLMIWDLRTN-QT 250 (406)
Q Consensus 175 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg---~i~i~d~~~~-~~ 250 (406)
+|++..+|++++.||.|++||++++.....+.......+|...|.+++|+|++..++++++.|+ .|++||++++ ..
T Consensus 174 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~ 253 (416)
T 2pm9_A 174 NQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP 253 (416)
T ss_dssp CSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC
T ss_pred CCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC
Confidence 9995559999999999999999886432221111111122788999999996668999999998 9999999986 56
Q ss_pred ccccc-ccCCCeeEEEecC-CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEE
Q 015484 251 QQRVK-AHEKEVNYLSFNP-YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLM 328 (406)
Q Consensus 251 ~~~~~-~~~~~v~~i~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~ 328 (406)
...+. +|...|.+++|+| ++. +|++++.||.|++||+++.+. +..+..|...|.+++|+|+++.+|++++.||.|+
T Consensus 254 ~~~~~~~~~~~v~~~~~s~~~~~-~l~s~~~dg~v~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~ 331 (416)
T 2pm9_A 254 LQTLNQGHQKGILSLDWCHQDEH-LLLSSGRDNTVLLWNPESAEQ-LSQFPARGNWCFKTKFAPEAPDLFACASFDNKIE 331 (416)
T ss_dssp SBCCCSCCSSCEEEEEECSSCSS-CEEEEESSSEEEEECSSSCCE-EEEEECSSSCCCCEEECTTCTTEEEECCSSSEEE
T ss_pred cEEeecCccCceeEEEeCCCCCC-eEEEEeCCCCEEEeeCCCCcc-ceeecCCCCceEEEEECCCCCCEEEEEecCCcEE
Confidence 67777 8999999999999 666 999999999999999998654 8888999999999999999955899999999999
Q ss_pred EEeCCCCCccccccc---ccCCCCeeEEEec------------------CCCCCeeeEEeCCCCCcEEEEEeCCCcEEEE
Q 015484 329 VWDLNRIGDEQLELD---AEDGPPELLFSHG------------------GHKAKISDFSWNKNDPWVISSVADDNTVQVW 387 (406)
Q Consensus 329 iwd~~~~~~~~~~~~---~~~~~~~~~~~~~------------------~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw 387 (406)
+||+........... ....+....+... .|..++.+++|+|+|+ +|++++.|+.|+||
T Consensus 332 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~la~~~~d~~v~~w 410 (416)
T 2pm9_A 332 VQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGK-LVQITPDGKGVSIT 410 (416)
T ss_dssp EEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTE-EECBCTTSSCBCCB
T ss_pred EEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCe-EEEEeCCCCeEEEE
Confidence 999987554332211 1111122222222 2677888999999999 79999999999999
Q ss_pred eCCCc
Q 015484 388 QMTDS 392 (406)
Q Consensus 388 ~~~~~ 392 (406)
++.++
T Consensus 411 ~~~~~ 415 (416)
T 2pm9_A 411 NPKIS 415 (416)
T ss_dssp CCCCC
T ss_pred EeccC
Confidence 99864
No 36
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.2e-36 Score=277.95 Aligned_cols=300 Identities=16% Similarity=0.228 Sum_probs=231.4
Q ss_pred CCCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCC
Q 015484 37 EWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDG 116 (406)
Q Consensus 37 ~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 116 (406)
.-|..++.|.|+.... . ..++.+... +.|.++++... ... ..+.......|.+
T Consensus 18 ~~~v~~i~~~p~~~~~----~----~~~~~~~~~-----~~v~vw~~~~~---~~~-----------~~~~~~~~~~~~~ 70 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEG----D----PLVFATVGS-----NRVTLYECHSQ---GEI-----------RLLQSYVDADADE 70 (366)
T ss_dssp CSCEEEEEECTTCCTT----S----CEEEEEEET-----TEEEEEEECGG---GCE-----------EEEEEEECSCTTC
T ss_pred CCceEEEEEecccCCC----C----ceEEEECCC-----CEEEEEEcCCC---cEE-----------EeeeeccccCCCC
Confidence 4488899999862211 0 134444432 46888876621 000 0122222223779
Q ss_pred ceeEEEEcCCCC---cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecC-CCCCeEEEecCCCeEE
Q 015484 117 EVNRARCMPQKP---NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSP-FKEGYLVSGSHDNKIC 192 (406)
Q Consensus 117 ~v~~i~~~p~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~l~s~~~dg~i~ 192 (406)
.|++++|+|++. .+|++|+.||.|++||+.+. .....+.+|...|.+++|+| ++. +|++|+.||.|+
T Consensus 71 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~-~l~s~~~dg~i~ 141 (366)
T 3k26_A 71 NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM--------QCIKHYVGHGNAINELKFHPRDPN-LLLSVSKDHALR 141 (366)
T ss_dssp CEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC--------CEEEEEESCCSCEEEEEECSSCTT-EEEEEETTSCEE
T ss_pred cEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc--------eEeeeecCCCCcEEEEEECCCCCC-EEEEEeCCCeEE
Confidence 999999999832 58999999999999999873 44677889999999999999 666 999999999999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccc----------------
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA---------------- 256 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------------- 256 (406)
+||+.++... ..+..+..|...|.+++|+| ++.+|++++.||.|++||+++++....+..
T Consensus 142 iwd~~~~~~~---~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (366)
T 3k26_A 142 LWNIQTDTLV---AIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQ 217 (366)
T ss_dssp EEETTTTEEE---EEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCE
T ss_pred EEEeecCeEE---EEecccccccCceeEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccce
Confidence 9999876421 11112257899999999999 788999999999999999998776555443
Q ss_pred ------------cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC-------------CcEEecCCCCCeEEEEEc
Q 015484 257 ------------HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV-------------PLHILSSHTEEVFQVEWD 311 (406)
Q Consensus 257 ------------~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-------------~~~~~~~h~~~v~~i~~~ 311 (406)
|...|.+++|+ +. +|++++.||.|++||+++... .+..+..|...|.+++|+
T Consensus 218 ~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 294 (366)
T 3k26_A 218 KIHFPDFSTRDIHRNYVDCVRWL--GD-LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFS 294 (366)
T ss_dssp EECCCSEEECSSCSSCCCEEEEE--TT-EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCE
T ss_pred eeccCccccccCCcceEEEEEEc--CC-EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEc
Confidence 88999999999 55 899999999999999987643 256677889999999999
Q ss_pred CC--CCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCC--CCCeeeEEeCCCCCcEEEEEeCCCcEEEE
Q 015484 312 PN--HETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH--KAKISDFSWNKNDPWVISSVADDNTVQVW 387 (406)
Q Consensus 312 p~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~~l~s~~~dg~i~iw 387 (406)
|+ ++ +|++++.||.|++||+...... ......+.+| ...|.+++|+|+++ +|++++.||.|++|
T Consensus 295 ~~~~~~-~l~~~~~dg~i~vwd~~~~~~~----------~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw 362 (366)
T 3k26_A 295 MDFWQK-MLALGNQVGKLYVWDLEVEDPH----------KAKCTTLTHHKCGAAIRQTSFSRDSS-ILIAVCDDASIWRW 362 (366)
T ss_dssp ECTTSS-EEEEECTTSCEEEEECCSSSGG----------GCEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEE
T ss_pred CCCCCc-EEEEEecCCcEEEEECCCCCCc----------cccceEEcccccCCceEEEEeCCCCC-eEEEEeCCCEEEEE
Confidence 99 76 7999999999999999874321 1244455666 78999999999999 69999999999999
Q ss_pred eCCC
Q 015484 388 QMTD 391 (406)
Q Consensus 388 ~~~~ 391 (406)
|+.+
T Consensus 363 d~~~ 366 (366)
T 3k26_A 363 DRLR 366 (366)
T ss_dssp EC--
T ss_pred EecC
Confidence 9863
No 37
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.7e-36 Score=273.97 Aligned_cols=308 Identities=16% Similarity=0.238 Sum_probs=235.7
Q ss_pred CCCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCC
Q 015484 37 EWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDG 116 (406)
Q Consensus 37 ~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 116 (406)
.-+..++.|.|+.. ..++.|+. ...++.|.++++.- ++.......+|.+
T Consensus 18 ~~~v~~~~~~p~~~-----------~l~~~~s~--~~~d~~v~iw~~~~------------------~~~~~~~~~~~~~ 66 (357)
T 3i2n_A 18 NYTVFDCKWVPCSA-----------KFVTMGNF--ARGTGVIQLYEIQH------------------GDLKLLREIEKAK 66 (357)
T ss_dssp SSCEEEEEECTTSS-----------EEEEEEC----CCCEEEEEEEECS------------------SSEEEEEEEEESS
T ss_pred CCceEEEEEcCCCc-----------eEEEecCc--cCCCcEEEEEeCCC------------------CcccceeeecccC
Confidence 34788999988421 12334433 12357888887661 2344566678999
Q ss_pred ceeEEEEcCCC--CcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEe------cCCCCCeEEEecCC
Q 015484 117 EVNRARCMPQK--PNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSW------SPFKEGYLVSGSHD 188 (406)
Q Consensus 117 ~v~~i~~~p~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~------~~~~~~~l~s~~~d 188 (406)
.|++++|+|++ ..+|++|+.||.|++|++.... .+...+.+|...|.+++| +|++. +|++|+.|
T Consensus 67 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d 138 (357)
T 3i2n_A 67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE-------MPVYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRD 138 (357)
T ss_dssp CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS-------SCSEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETT
T ss_pred cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC-------ccEEEEEecccceEEEeeccccccCCCcc-EEEEEeCC
Confidence 99999999983 3689999999999999998732 257788899999999955 67777 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeecc----CccEEEEE----eeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAH----ESVVEDVS----WHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKE 260 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~----~~~i~~i~----~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 260 (406)
|.|++||+..+... ...+..| ...+.+++ |+| ++.++++++.||.|++||+++++.... ..+...
T Consensus 139 ~~i~vwd~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~ 211 (357)
T 3i2n_A 139 GTVKVWDPRQKDDP-----VANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNG 211 (357)
T ss_dssp SCEEEECTTSCSSC-----SEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSC
T ss_pred CeEEEEeCCCCCCc-----ceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeee-cCCCCc
Confidence 99999999886521 1233333 33788888 666 788999999999999999998876443 557889
Q ss_pred eeEEEecC---CCCcEEEEEeCCCcEEEEeCCCCCCCcEEe-----cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 015484 261 VNYLSFNP---YNEWVLATASSDTTVALFDMRKMTVPLHIL-----SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDL 332 (406)
Q Consensus 261 v~~i~~~~---~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~ 332 (406)
|.+++|+| ++. +|++++.||.|++||++.... +..+ ..|...|.+++|+|+++.+|++++.||.|++||+
T Consensus 212 v~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 289 (357)
T 3i2n_A 212 VCSLEFDRKDISMN-KLVATSLEGKFHVFDMRTQHP-TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKY 289 (357)
T ss_dssp EEEEEESCSSSSCC-EEEEEESTTEEEEEEEEEEET-TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEE
T ss_pred eEEEEcCCCCCCCC-EEEEECCCCeEEEEeCcCCCc-ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeec
Confidence 99999999 777 899999999999999987554 3333 3899999999999999767999999999999999
Q ss_pred CCCCcccccccc-----cCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 333 NRIGDEQLELDA-----EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 333 ~~~~~~~~~~~~-----~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
+........... ..+....+..+.+|...|.+++|+|++++++++++.||.|+||++.+.
T Consensus 290 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 290 EYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp ECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred CCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 864432111000 011225677888999999999999999975558999999999999864
No 38
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.7e-36 Score=274.69 Aligned_cols=275 Identities=19% Similarity=0.278 Sum_probs=220.4
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC--CCCeEEEecCC
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF--KEGYLVSGSHD 188 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~d 188 (406)
..+|.+.|++++|+|++ .+||+|+.||.|+||++..... .......+.+|...|.+++|+|. +. +|++|+.|
T Consensus 7 ~~gH~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~d~~-~l~s~~~d 80 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYG-RHVATCSSDQHIKVFKLDKDTS----NWELSDSWRAHDSSIVAIDWASPEYGR-IIASASYD 80 (351)
T ss_dssp ECCCSSCEEEEEECSSS-SEEEEEETTSEEEEEEECSSSC----CEEEEEEEECCSSCEEEEEECCGGGCS-EEEEEETT
T ss_pred CcccccceeEEEEcCCC-CEEEEeeCCCeEEEEECCCCCC----cceecceeccCCCcEEEEEEcCCCCCC-EEEEEcCC
Confidence 35799999999999998 6899999999999999986321 11335667899999999999994 66 99999999
Q ss_pred CeEEEEeCCCccCC---ceeeeeeeeeccCccEEEEEeeCCC-CCEEEEEecCCcEEEEECCCCccccccc---------
Q 015484 189 NKICLWDVSALAQD---KVIDAMHVYEAHESVVEDVSWHLKN-ENLFGSAGDDCQLMIWDLRTNQTQQRVK--------- 255 (406)
Q Consensus 189 g~i~iwd~~~~~~~---~~~~~~~~~~~~~~~i~~i~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------- 255 (406)
|.|++||++.+... .....+..+..|...|.+++|+|.. +.+|++++.||.|++||+++++.+..+.
T Consensus 81 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 160 (351)
T 3f3f_A 81 KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS 160 (351)
T ss_dssp SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccc
Confidence 99999999876432 1224456677899999999999932 8899999999999999999887665542
Q ss_pred ----ccCCCeeEEEecCC---CCcEEEEEeCCCcEEEEeCCCCCC-CcEEecCCCCCeEEEEEcCCCC---CEEEEEeCC
Q 015484 256 ----AHEKEVNYLSFNPY---NEWVLATASSDTTVALFDMRKMTV-PLHILSSHTEEVFQVEWDPNHE---TVLASSADD 324 (406)
Q Consensus 256 ----~~~~~v~~i~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~i~~~p~~~---~~l~s~~~d 324 (406)
.+...+.+++|+|+ +. ++++++.++.+.+|+...... .+..+.+|...|++++|+|++. .+|++++.|
T Consensus 161 ~~~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~d 239 (351)
T 3f3f_A 161 IPPANHLQSDFCLSWCPSRFSPE-KLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKD 239 (351)
T ss_dssp CCCSSCSCCCEEEEECCCSSSCC-EEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETT
T ss_pred cccCCcccceeEEEeccCCCCCc-EEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCC
Confidence 57788999999997 66 999999999998887766442 2567788999999999999982 379999999
Q ss_pred CcEEEEeCCCCCcccccccc--------------------------------cCCCCeeEEEecCCCCCeeeEEeCCCCC
Q 015484 325 RRLMVWDLNRIGDEQLELDA--------------------------------EDGPPELLFSHGGHKAKISDFSWNKNDP 372 (406)
Q Consensus 325 g~i~iwd~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 372 (406)
|.|++||++........... .......+..+.+|...|++++|+|+++
T Consensus 240 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 319 (351)
T 3f3f_A 240 GRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGT 319 (351)
T ss_dssp SCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSC
T ss_pred CeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCC
Confidence 99999999864221111000 0011256777889999999999999999
Q ss_pred cEEEEEeCCCcEEEEeCCCcc
Q 015484 373 WVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 373 ~~l~s~~~dg~i~iw~~~~~~ 393 (406)
+|++++.||.|+||++.++.
T Consensus 320 -~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 320 -ILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp -CEEEEETTSCEEEEEECTTS
T ss_pred -EEEEecCCCcEEEEecCcCc
Confidence 68999999999999998764
No 39
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.7e-36 Score=271.78 Aligned_cols=254 Identities=16% Similarity=0.252 Sum_probs=203.4
Q ss_pred EeecCCceeEEEE-----cC-CCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEE
Q 015484 111 KIRVDGEVNRARC-----MP-QKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVS 184 (406)
Q Consensus 111 ~~~h~~~v~~i~~-----~p-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 184 (406)
..+|.+.|++++| ++ ++ .+|++|+.|++|+||++....... ....+...+.+|...|.+++|+|++. +|++
T Consensus 17 l~gH~~~V~~~~~~~s~~~~~d~-~~l~sgs~D~~v~iWd~~~~~~~~-~~~~~~~~l~~h~~~V~~~~~~~~~~-~l~s 93 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKENEDS-PVLISGSRDKTVMIWKLYEEEQNG-YFGIPHKALTGHNHFVSDLALSQENC-FAIS 93 (343)
T ss_dssp EECCSSCEEEEEECCCSSTTCCC-CEEEEEETTSCEEEEEECSSCCSS-BSEEEEEEECCCSSCEEEEEECSSTT-EEEE
T ss_pred eccchhhhhheeeEEEeecCCCC-CEEEEEcCCCEEEEEECCcCCccc-ccccccchhccCCCceEEEEECCCCC-EEEE
Confidence 4479999999999 76 55 789999999999999987632110 01223567889999999999999988 9999
Q ss_pred ecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccc--cccccCCCee
Q 015484 185 GSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ--RVKAHEKEVN 262 (406)
Q Consensus 185 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~v~ 262 (406)
|+.|++|++||+.++. .+..+.+|...|.+++|+| ++.+|++++.|+.|++||+....... ....|...|.
T Consensus 94 ~s~D~~v~lwd~~~~~------~~~~~~~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~ 166 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGT------TYKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVS 166 (343)
T ss_dssp EETTSEEEEEETTSSC------EEEEEECCCSCEEEEEECS-STTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEE
T ss_pred EcCCCcEEEEECCCCc------EEEEEcCCCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceee
Confidence 9999999999998864 2456778999999999999 68889999999999999998433221 2236888999
Q ss_pred EEEecCCCC---------cEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 015484 263 YLSFNPYNE---------WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLN 333 (406)
Q Consensus 263 ~i~~~~~~~---------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~ 333 (406)
+++|+|++. .+|++++.||.|++||.+ ......+..|...|.+++|+|+++ +|++|+.||.|++||+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~v~~~~~s~~g~-~l~sgs~dg~v~iwd~~ 243 (343)
T 2xzm_R 167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESNVNHLSISPNGK-YIATGGKDKKLLIWDIL 243 (343)
T ss_dssp EEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEEEEECCSSCEEEEEECTTSS-EEEEEETTCEEEEEESS
T ss_pred eeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--CceeEEEcCccccceEEEECCCCC-EEEEEcCCCeEEEEECC
Confidence 999999872 389999999999999954 233667889999999999999997 69999999999999995
Q ss_pred CCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 334 RIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
.... ....+ .+...|.+++|+|+++ ++++ +.|+.|++|++.++.
T Consensus 244 ~~~~-------------~~~~~-~~~~~v~~v~~sp~~~-~la~-~~d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 244 NLTY-------------PQREF-DAGSTINQIAFNPKLQ-WVAV-GTDQGVKIFNLMTQS 287 (343)
T ss_dssp CCSS-------------CSEEE-ECSSCEEEEEECSSSC-EEEE-EESSCEEEEESSSCC
T ss_pred CCcc-------------cceee-cCCCcEEEEEECCCCC-EEEE-ECCCCEEEEEeCCCC
Confidence 4221 11111 1345699999999998 5654 558889999998754
No 40
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6e-36 Score=290.59 Aligned_cols=241 Identities=24% Similarity=0.435 Sum_probs=212.4
Q ss_pred EEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC
Q 015484 108 IAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 108 ~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
.....+|...|.+++|+|++ .+|++|+.||.|++|+... .....+.+|...|.+++|+|++. +|++++.
T Consensus 337 ~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~~~~~~~---------~~~~~~~~~~~~v~~~~~s~dg~-~l~~~~~ 405 (577)
T 2ymu_A 337 LQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRNG---------QLLQTLTGHSSSVRGVAFSPDGQ-TIASASD 405 (577)
T ss_dssp EEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTC---------CEEEEEECCSSCEEEEEECTTSS-CEEEEET
T ss_pred eEEEeCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEcCCC---------CEEEEecCCCCCeEEEEECCCCC-EEEEEeC
Confidence 34456799999999999999 6899999999999999653 33667889999999999999998 9999999
Q ss_pred CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEec
Q 015484 188 DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFN 267 (406)
Q Consensus 188 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~ 267 (406)
|+.|++||... +.+..+..|...|.+++|+| ++.+|++++.|+.|++||+ +++.+..+.+|...|++++|+
T Consensus 406 d~~v~~~~~~~-------~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s 476 (577)
T 2ymu_A 406 DKTVKLWNRNG-------QLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFS 476 (577)
T ss_dssp TSEEEEECTTC-------CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEEC
T ss_pred CCEEEEEeCCC-------CEEEEecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEc
Confidence 99999999643 12456678999999999999 6889999999999999996 466777888899999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCC
Q 015484 268 PYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDG 347 (406)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 347 (406)
|++. +|++++.|+.|++||.. ...+..+.+|...|++++|+|+++ +|++++.||.|+|||...
T Consensus 477 pd~~-~las~~~d~~i~iw~~~--~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~~dg~v~lwd~~~------------- 539 (577)
T 2ymu_A 477 PDGQ-TIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRNG------------- 539 (577)
T ss_dssp TTSC-EEEEEETTSEEEEEETT--SCEEEEEECCSSCEEEEEECTTSS-CEEEEETTSEEEEECTTS-------------
T ss_pred CCCC-EEEEEeCCCEEEEEcCC--CCEEEEEeCCCCCEEEEEEcCCCC-EEEEEECcCEEEEEeCCC-------------
Confidence 9999 99999999999999964 344788999999999999999997 599999999999999643
Q ss_pred CCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 348 PPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 348 ~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
+++..+.+|...|++++|+|+++ +|+|++.|+.|++||
T Consensus 540 --~~~~~~~~h~~~v~~~~fs~dg~-~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 540 --QLLQTLTGHSSSVWGVAFSPDGQ-TIASASSDKTVKLWN 577 (577)
T ss_dssp --CEEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEEC
T ss_pred --CEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCEEEEeC
Confidence 56777889999999999999999 488999999999997
No 41
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4e-35 Score=264.80 Aligned_cols=257 Identities=16% Similarity=0.211 Sum_probs=218.4
Q ss_pred CeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee--CCCCCeeEEEecCCCCCeE
Q 015484 105 KVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK--GHDKEGYGLSWSPFKEGYL 182 (406)
Q Consensus 105 ~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l 182 (406)
........+|.+.|++++|+|++ .+|++++ ||.|++|++..... ......+. +|...|.+++|+|++. +|
T Consensus 41 ~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~-dg~i~iw~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~-~l 112 (337)
T 1gxr_A 41 HARQINTLNHGEVVCAVTISNPT-RHVYTGG-KGCVKVWDISHPGN-----KSPVSQLDCLNRDNYIRSCKLLPDGC-TL 112 (337)
T ss_dssp EEEEEEEECCSSCCCEEEECSSS-SEEEEEC-BSEEEEEETTSTTC-----CSCSEEEECSCTTSBEEEEEECTTSS-EE
T ss_pred ccccceeccCCCceEEEEEecCC-cEEEEcC-CCeEEEEECCCCCc-----eeeeecccccCCCCcEEEEEEcCCCC-EE
Confidence 34556677899999999999999 5788888 99999999987432 22344444 7899999999999888 99
Q ss_pred EEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCee
Q 015484 183 VSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVN 262 (406)
Q Consensus 183 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 262 (406)
++++.||.|++||+.++.. .....+..|...|.+++|+| ++.++++++.||.|++||+++++.+..+..|...+.
T Consensus 113 ~~~~~d~~i~~~d~~~~~~----~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~ 187 (337)
T 1gxr_A 113 IVGGEASTLSIWDLAAPTP----RIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS 187 (337)
T ss_dssp EEEESSSEEEEEECCCC------EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEEcCCCcEEEEECCCCCc----ceeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceE
Confidence 9999999999999987542 22355667889999999999 788999999999999999999998888888999999
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccc
Q 015484 263 YLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLEL 342 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 342 (406)
+++|+|++. +|++++.||.|++||+++... +..+ .+...+.+++|+|+++ +|++++.||.|++||+...
T Consensus 188 ~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~-~~~~-~~~~~v~~~~~s~~~~-~l~~~~~~~~i~~~~~~~~------- 256 (337)
T 1gxr_A 188 CIDISNDGT-KLWTGGLDNTVRSWDLREGRQ-LQQH-DFTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVNKP------- 256 (337)
T ss_dssp EEEECTTSS-EEEEEETTSEEEEEETTTTEE-EEEE-ECSSCEEEEEECTTSS-EEEEEETTSCEEEEETTSS-------
T ss_pred EEEECCCCC-EEEEEecCCcEEEEECCCCce-Eeee-cCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCC-------
Confidence 999999998 899999999999999998653 4443 4788999999999997 6999999999999999862
Q ss_pred cccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 343 DAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 343 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.......|...|.+++|+|+++ +|++++.||.|++|++.++..
T Consensus 257 --------~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~~~~~~~~ 299 (337)
T 1gxr_A 257 --------DKYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYGAS 299 (337)
T ss_dssp --------CEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCE
T ss_pred --------CeEEEcCCccceeEEEECCCCC-EEEEecCCCcEEEEECCCCeE
Confidence 2345677899999999999999 689999999999999988754
No 42
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.4e-35 Score=271.63 Aligned_cols=276 Identities=18% Similarity=0.273 Sum_probs=217.5
Q ss_pred EeecCCceeEEEEcC-CCCcEEEEEeCCCeEEEEeCCCccccccCCCCCc-----eeeeCCCCCeeEEEecCCCCCeEEE
Q 015484 111 KIRVDGEVNRARCMP-QKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPD-----LRLKGHDKEGYGLSWSPFKEGYLVS 184 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-----~~~~~h~~~v~~l~~~~~~~~~l~s 184 (406)
..+|.+.|++++|+| ++ .+||+|+.||.|+||++.............. ....+|...|.+++|+|++..+|++
T Consensus 39 ~~~h~~~v~~~~~s~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 117 (408)
T 4a11_B 39 ERIHGGGINTLDIEPVEG-RYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTS 117 (408)
T ss_dssp CCCCSSCEEEEEECTTTC-CEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEE
T ss_pred eeccCCcEEEEEEecCCC-CEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEE
Confidence 346999999999999 77 7899999999999999987433110000000 0012599999999999955449999
Q ss_pred ecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCC--CCEEEEEecCCcEEEEECCCCcccccccccCCCee
Q 015484 185 GSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKN--ENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVN 262 (406)
Q Consensus 185 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 262 (406)
++.||.|++||+.++... ..+ .+...+.++.|+|.+ +.++++++.||.|++||+++++.+..+..|...|.
T Consensus 118 ~~~d~~i~iwd~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~ 190 (408)
T 4a11_B 118 SSFDKTLKVWDTNTLQTA------DVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEIL 190 (408)
T ss_dssp EETTSEEEEEETTTTEEE------EEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEE
T ss_pred EeCCCeEEEeeCCCCccc------eec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEE
Confidence 999999999999886432 222 367789999998853 34899999999999999999999889999999999
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEe---------------cCCCCCeEEEEEcCCCCCEEEEEeCCCcE
Q 015484 263 YLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHIL---------------SSHTEEVFQVEWDPNHETVLASSADDRRL 327 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---------------~~h~~~v~~i~~~p~~~~~l~s~~~dg~i 327 (406)
+++|+|++..+|++|+.||.|++||++....++..+ ..|...|.+++|+|+++ +|++++.||.|
T Consensus 191 ~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i 269 (408)
T 4a11_B 191 AVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL-HLLTVGTDNRM 269 (408)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS-EEEEEETTSCE
T ss_pred EEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC-EEEEecCCCeE
Confidence 999999998779999999999999999876555555 57889999999999997 69999999999
Q ss_pred EEEeCCCCCcccccccc---------------------------------cCCCCeeEEEecCCCCCeeeEEeCCCCCcE
Q 015484 328 MVWDLNRIGDEQLELDA---------------------------------EDGPPELLFSHGGHKAKISDFSWNKNDPWV 374 (406)
Q Consensus 328 ~iwd~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~ 374 (406)
++||+............ .......+..+.+|...|++++|+|+++ +
T Consensus 270 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~ 348 (408)
T 4a11_B 270 RLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQ-E 348 (408)
T ss_dssp EEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTT-E
T ss_pred EEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCC-E
Confidence 99999875432211000 0012356677788999999999999999 6
Q ss_pred EEEEeCCCcEEEEeCCCcccCC
Q 015484 375 ISSVADDNTVQVWQMTDSIYRD 396 (406)
Q Consensus 375 l~s~~~dg~i~iw~~~~~~~~~ 396 (406)
|++++.||.|++|++.++...+
T Consensus 349 l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 349 LYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp EEEEETTSCEEEEEECC-----
T ss_pred EEEECCCCeEEEEeCCCCCccC
Confidence 9999999999999999876543
No 43
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5.8e-36 Score=292.40 Aligned_cols=246 Identities=17% Similarity=0.328 Sum_probs=207.8
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
+.+.+.+++|+|++ .+||+++ ++.|+||++.+. .....+.+|...|++++|+|+|. +|++|+.||+|++
T Consensus 17 ~~g~~~~~~~spdg-~~l~~~~-~~~v~l~~~~~~--------~~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~l 85 (611)
T 1nr0_A 17 ARGTAVVLGNTPAG-DKIQYCN-GTSVYTVPVGSL--------TDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRI 85 (611)
T ss_dssp CTTCCCCCEECTTS-SEEEEEE-TTEEEEEETTCS--------SCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEE
T ss_pred ccCceeEEeeCCCC-CEEEeCC-CCEEEEecCCCc--------ccCeEecCCCCceEEEEECCCCc-EEEEEeCCCCEEE
Confidence 46889999999999 5788887 569999999762 34678899999999999999998 9999999999999
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC----CcEEEEECCCCcccccccccCCCeeEEEecCC
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD----CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~ 269 (406)
||+.++... ....+..|...|.+++|+| ++..|++++.+ +.|++|| .++....+.+|...|++++|+|+
T Consensus 86 Wd~~~~~~~----~~~~~~~~~~~v~~v~fs~-dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~ 158 (611)
T 1nr0_A 86 WDTTQTTHI----LKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPS 158 (611)
T ss_dssp EESSSTTCC----EEEEEECSSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSS
T ss_pred eECCCCcce----eeEeecccCCceEEEEECC-CCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCC
Confidence 999754321 2345678999999999999 57777777754 4688887 45667778899999999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCC
Q 015484 270 NEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (406)
++..|++|+.|+.|++||.+..+. +..+.+|...|.+++|+|+++ +|++++.|++|++||+....
T Consensus 159 ~~~~l~s~s~D~~v~lwd~~~~~~-~~~l~~H~~~V~~v~fspdg~-~las~s~D~~i~lwd~~~g~------------- 223 (611)
T 1nr0_A 159 RPFRIISGSDDNTVAIFEGPPFKF-KSTFGEHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDGT------------- 223 (611)
T ss_dssp SSCEEEEEETTSCEEEEETTTBEE-EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCC-------------
T ss_pred CCeEEEEEeCCCeEEEEECCCCeE-eeeeccccCceEEEEECCCCC-EEEEEECCCcEEEEECCCCc-------------
Confidence 886799999999999999887543 678899999999999999997 79999999999999987632
Q ss_pred eeEEEe-------cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 350 ELLFSH-------GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 350 ~~~~~~-------~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.+..+ .+|...|.+++|+|+++ +|++++.|+.|++||+.++..
T Consensus 224 -~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~ 273 (611)
T 1nr0_A 224 -KTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKV 273 (611)
T ss_dssp -EEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEE
T ss_pred -EeeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCce
Confidence 22233 17999999999999999 699999999999999987643
No 44
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-36 Score=275.20 Aligned_cols=258 Identities=21% Similarity=0.303 Sum_probs=212.8
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC--CCCeEEEecCC
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF--KEGYLVSGSHD 188 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~d 188 (406)
..+|.+.|++++|+|++ .+||+|+.||.|+||++... .......+.+|...|++++|+++ +. +|++|+.|
T Consensus 7 ~~~h~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~------~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~~d 78 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGE------THKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYD 78 (379)
T ss_dssp EEECCCCEEEEEECSSS-SEEEEEETTSCEEEEEEETT------EEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETT
T ss_pred ecCCcccEEEEEEcCCC-CEEEEEECCCcEEEEecCCC------cceeeeEecCCCCcEEEEEeCCCCCCC-EEEEeccC
Confidence 45799999999999998 68999999999999999742 13346678899999999999976 66 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCC-CCEEEEEecCCcEEEEECCCCcc--cccccccCCCeeEEE
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKN-ENLFGSAGDDCQLMIWDLRTNQT--QQRVKAHEKEVNYLS 265 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~i~ 265 (406)
|.|++||+.++. ......+..|...|.+++|+|.. +.+|++++.||.|++||++.+.. ...+..|...|.+++
T Consensus 79 g~v~iwd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~ 154 (379)
T 3jrp_A 79 GKVLIWKEENGR----WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 154 (379)
T ss_dssp SCEEEEEEETTE----EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEE
T ss_pred CEEEEEEcCCCc----eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEE
Confidence 999999998753 22345667789999999999942 78999999999999999998754 334567899999999
Q ss_pred ecC-------------CCCcEEEEEeCCCcEEEEeCCCCCC---CcEEecCCCCCeEEEEEcCCC--CCEEEEEeCCCcE
Q 015484 266 FNP-------------YNEWVLATASSDTTVALFDMRKMTV---PLHILSSHTEEVFQVEWDPNH--ETVLASSADDRRL 327 (406)
Q Consensus 266 ~~~-------------~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~h~~~v~~i~~~p~~--~~~l~s~~~dg~i 327 (406)
|+| ++. +|++++.||.|++||++.... ....+..|...|.+++|+|++ ..+|++++.||.|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i 233 (379)
T 3jrp_A 155 WAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 233 (379)
T ss_dssp ECCCC----------CTTC-EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred EcCccccccccccCCCCCC-EEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEE
Confidence 999 466 999999999999999987653 245678899999999999993 2479999999999
Q ss_pred EEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 328 MVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 328 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
++||+....... ...+.....|...|.+++|+|+++ +|++++.||.|++|++..
T Consensus 234 ~iwd~~~~~~~~---------~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 234 IIWTQDNEQGPW---------KKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKENL 287 (379)
T ss_dssp EEEEESSTTSCC---------EEEESSSSCCSSCEEEEEECSSSC-CEEEEESSSSEEEEEEEE
T ss_pred EEEeCCCCCccc---------eeeeeccccCCCcEEEEEEcCCCC-EEEEecCCCcEEEEeCCC
Confidence 999998733211 112222244788999999999999 588889999999999873
No 45
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-35 Score=268.15 Aligned_cols=261 Identities=17% Similarity=0.234 Sum_probs=218.9
Q ss_pred CCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEE
Q 015484 104 PKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLV 183 (406)
Q Consensus 104 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 183 (406)
...+.....+|.+.|++++|+|++ .+|++|+.||.|+|||+.+. .....+.+|...|.+++|+|++. +|+
T Consensus 21 ~~~~~~~l~~h~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~--------~~~~~~~~h~~~v~~~~~~~~~~-~l~ 90 (369)
T 3zwl_B 21 SHMKAIKLTGHERPLTQVKYNKEG-DLLFSCSKDSSASVWYSLNG--------ERLGTLDGHTGTIWSIDVDCFTK-YCV 90 (369)
T ss_dssp CSEEEEEEECCSSCEEEEEECTTS-CEEEEEESSSCEEEEETTTC--------CEEEEECCCSSCEEEEEECTTSS-EEE
T ss_pred cccccEEEEEeeceEEEEEEcCCC-CEEEEEeCCCEEEEEeCCCc--------hhhhhhhhcCCcEEEEEEcCCCC-EEE
Confidence 446667778899999999999998 68999999999999999873 44677889999999999999888 999
Q ss_pred EecCCCeEEEEeCCCccCCceee---------------------------------------------------eeeeee
Q 015484 184 SGSHDNKICLWDVSALAQDKVID---------------------------------------------------AMHVYE 212 (406)
Q Consensus 184 s~~~dg~i~iwd~~~~~~~~~~~---------------------------------------------------~~~~~~ 212 (406)
+++.||.|++||+.+++....+. ....+.
T Consensus 91 s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 170 (369)
T 3zwl_B 91 TGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII 170 (369)
T ss_dssp EEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE
T ss_pred EEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc
Confidence 99999999999998754321110 001111
Q ss_pred ccCc--cEEEEEeeCCCCCEEEEEecCCcEEEEECCC-CcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCC
Q 015484 213 AHES--VVEDVSWHLKNENLFGSAGDDCQLMIWDLRT-NQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMR 289 (406)
Q Consensus 213 ~~~~--~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~ 289 (406)
.|.. .+.+++|+| ++.+|++++.||.|++||+++ .+.+..+..|...|.+++|+|++. +|++++.||.|++||++
T Consensus 171 ~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~ 248 (369)
T 3zwl_B 171 THEGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLT-YFITSSRDTNSFLVDVS 248 (369)
T ss_dssp CCTTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETT
T ss_pred CCcCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCC-EEEEecCCceEEEEECC
Confidence 2222 788899998 678899999999999999998 677778888999999999999998 89999999999999999
Q ss_pred CCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC--------------cEEEEeCCCCCcccccccccCCCCeeEEEe
Q 015484 290 KMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDR--------------RLMVWDLNRIGDEQLELDAEDGPPELLFSH 355 (406)
Q Consensus 290 ~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 355 (406)
+... +..+. +...+..++|+|+++ ++++++.++ .+++||+.. ...+..+
T Consensus 249 ~~~~-~~~~~-~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~--------------~~~~~~~ 311 (369)
T 3zwl_B 249 TLQV-LKKYE-TDCPLNTAVITPLKE-FIILGGGQEAKDVTTTSANEGKFEARFYHKIF--------------EEEIGRV 311 (369)
T ss_dssp TCCE-EEEEE-CSSCEEEEEECSSSS-EEEEEECCC-------------CEEEEEETTT--------------CCEEEEE
T ss_pred CCce-eeeec-CCCCceeEEecCCCc-eEEEeecCCCceEEEEecCCCcceeEEEecCC--------------Ccchhhe
Confidence 8654 55554 788999999999997 588888887 899999876 4566677
Q ss_pred cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 356 GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 356 ~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.+|...|.+++|+|+++ +|++++.||.|++|++.++.+
T Consensus 312 ~~~~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 312 QGHFGPLNTVAISPQGT-SYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp ECCSSCEEEEEECTTSS-EEEEEETTSEEEEEEECHHHH
T ss_pred ecccCcEEEEEECCCCC-EEEEEcCCCeEEEEECccccc
Confidence 88999999999999999 799999999999999998754
No 46
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.3e-34 Score=259.80 Aligned_cols=285 Identities=16% Similarity=0.233 Sum_probs=231.0
Q ss_pred CCCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCC
Q 015484 37 EWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDG 116 (406)
Q Consensus 37 ~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 116 (406)
.-+..++.|.|+. ..++.|. ++.+.++++.-. .. ...+.......|..
T Consensus 51 ~~~v~~~~~~~~~------------~~l~~~~------dg~i~iw~~~~~---------~~-----~~~~~~~~~~~~~~ 98 (337)
T 1gxr_A 51 GEVVCAVTISNPT------------RHVYTGG------KGCVKVWDISHP---------GN-----KSPVSQLDCLNRDN 98 (337)
T ss_dssp SSCCCEEEECSSS------------SEEEEEC------BSEEEEEETTST---------TC-----CSCSEEEECSCTTS
T ss_pred CCceEEEEEecCC------------cEEEEcC------CCeEEEEECCCC---------Cc-----eeeeecccccCCCC
Confidence 3467778887631 1444443 367888765422 00 12233344447999
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeC
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV 196 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 196 (406)
.|++++|+|++ .+|++++.||.|++|++.... ......+..|...|.+++|+|++. +|++++.||.|++||+
T Consensus 99 ~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~~~d~ 170 (337)
T 1gxr_A 99 YIRSCKLLPDG-CTLIVGGEASTLSIWDLAAPT------PRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDL 170 (337)
T ss_dssp BEEEEEECTTS-SEEEEEESSSEEEEEECCCC--------EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEET
T ss_pred cEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCC------cceeeecccCCCceEEEEECCCCC-EEEEEeCCCcEEEEeC
Confidence 99999999998 689999999999999998742 223567788999999999999888 9999999999999999
Q ss_pred CCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEE
Q 015484 197 SALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLAT 276 (406)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~ 276 (406)
.+++ ....+..|...|.+++|+| ++.++++++.||.|++||+++++.+..+. +...+.+++|+|++. +|++
T Consensus 171 ~~~~------~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~-~l~~ 241 (337)
T 1gxr_A 171 HNQT------LVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGE-WLAV 241 (337)
T ss_dssp TTTE------EEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSS-EEEE
T ss_pred CCCc------eeeeeecccCceEEEEECC-CCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCC-EEEE
Confidence 8753 2355667899999999999 67899999999999999999988776664 678899999999998 8999
Q ss_pred EeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEec
Q 015484 277 ASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG 356 (406)
Q Consensus 277 ~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (406)
++.++.|++||++... ...+..|...|.+++|+|+++ +|++++.||.|++||+... ..+. ..
T Consensus 242 ~~~~~~i~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~~~~~~--------------~~~~-~~ 303 (337)
T 1gxr_A 242 GMESSNVEVLHVNKPD--KYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYG--------------ASIF-QS 303 (337)
T ss_dssp EETTSCEEEEETTSSC--EEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTC--------------CEEE-EE
T ss_pred EcCCCcEEEEECCCCC--eEEEcCCccceeEEEECCCCC-EEEEecCCCcEEEEECCCC--------------eEEE-Ee
Confidence 9999999999999754 457788999999999999997 6999999999999999872 2222 23
Q ss_pred CCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 357 GHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 357 ~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
.|...|.+++|+|+++ +|++++.||.|++|++
T Consensus 304 ~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 304 KESSSVLSCDISVDDK-YIVTGSGDKKATVYEV 335 (337)
T ss_dssp ECSSCEEEEEECTTSC-EEEEEETTSCEEEEEE
T ss_pred cCCCcEEEEEECCCCC-EEEEecCCCeEEEEEE
Confidence 4778899999999999 6899999999999996
No 47
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.2e-35 Score=270.30 Aligned_cols=256 Identities=19% Similarity=0.338 Sum_probs=214.4
Q ss_pred eEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEe
Q 015484 106 VEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSG 185 (406)
Q Consensus 106 ~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 185 (406)
........|.+.|++++|+|++ .+|++|+.||.|++||+.+. .....+.+|...|.+++|+ +. +|++|
T Consensus 125 ~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~v~~~~~~--~~-~l~~~ 192 (401)
T 4aez_A 125 VSALAETDESTYVASVKWSHDG-SFLSVGLGNGLVDIYDVESQ--------TKLRTMAGHQARVGCLSWN--RH-VLSSG 192 (401)
T ss_dssp EEEEEECCTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTTC--------CEEEEECCCSSCEEEEEEE--TT-EEEEE
T ss_pred EeEeeecCCCCCEEEEEECCCC-CEEEEECCCCeEEEEECcCC--------eEEEEecCCCCceEEEEEC--CC-EEEEE
Confidence 4444455689999999999988 68999999999999999873 3467788999999999994 45 99999
Q ss_pred cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEE
Q 015484 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLS 265 (406)
Q Consensus 186 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~ 265 (406)
+.||.|++||++.... ....+..|...|.+++|+| ++.+|++++.||.|++||+++++.+..+..|...|.+++
T Consensus 193 ~~dg~i~i~d~~~~~~-----~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~ 266 (401)
T 4aez_A 193 SRSGAIHHHDVRIANH-----QIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVA 266 (401)
T ss_dssp ETTSEEEEEETTSSSC-----EEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEE
T ss_pred cCCCCEEEEecccCcc-----eeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEE
Confidence 9999999999985432 2456678999999999999 788999999999999999999988888888999999999
Q ss_pred ecCCCCcEEEEEe--CCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEE--EeCCCcEEEEeCCCCCccccc
Q 015484 266 FNPYNEWVLATAS--SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLAS--SADDRRLMVWDLNRIGDEQLE 341 (406)
Q Consensus 266 ~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s--~~~dg~i~iwd~~~~~~~~~~ 341 (406)
|+|++..++++++ .|+.|++||+++... +..+. +...|.+++|+|+++. +++ |+.||.|++||+....
T Consensus 267 ~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~-~~~~~-~~~~v~~~~~s~~~~~-l~~~~g~~dg~i~v~~~~~~~----- 338 (401)
T 4aez_A 267 WCPWQSNLLATGGGTMDKQIHFWNAATGAR-VNTVD-AGSQVTSLIWSPHSKE-IMSTHGFPDNNLSIWSYSSSG----- 338 (401)
T ss_dssp ECTTSTTEEEEECCTTTCEEEEEETTTCCE-EEEEE-CSSCEEEEEECSSSSE-EEEEECTTTCEEEEEEEETTE-----
T ss_pred ECCCCCCEEEEecCCCCCEEEEEECCCCCE-EEEEe-CCCcEEEEEECCCCCe-EEEEeecCCCcEEEEecCCcc-----
Confidence 9998887888876 799999999998654 55554 6788999999999984 666 4489999999987621
Q ss_pred ccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 342 LDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 342 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
......+.+|...|.+++|+|+++ +|++++.||.|++|++.++...
T Consensus 339 -------~~~~~~~~~h~~~v~~~~~s~dg~-~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 339 -------LTKQVDIPAHDTRVLYSALSPDGR-ILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp -------EEEEEEEECCSSCCCEEEECTTSS-EEEEECTTSEEEEEECCC----
T ss_pred -------ceeEEEecCCCCCEEEEEECCCCC-EEEEEeCCCcEEEEECCCCccc
Confidence 233445678999999999999999 6999999999999999887543
No 48
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.6e-35 Score=272.65 Aligned_cols=298 Identities=15% Similarity=0.197 Sum_probs=233.0
Q ss_pred CCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCCc
Q 015484 38 WPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGE 117 (406)
Q Consensus 38 ~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 117 (406)
-+..+++|.| . .++.|+. ++.|.++++.-. .... +.........|...
T Consensus 17 ~~i~~~~~~~----~----------~l~s~~~-----dg~i~iw~~~~~---~~~~----------~~~~~~~~~~h~~~ 64 (397)
T 1sq9_A 17 ADIFSVSACN----S----------FTVSCSG-----DGYLKVWDNKLL---DNEN----------PKDKSYSHFVHKSG 64 (397)
T ss_dssp SCEEEEEECS----S----------EEEEEET-----TSEEEEEESBCC---TTCC----------GGGGEEEEECCTTC
T ss_pred cCeEEEEecC----C----------eEEEEcC-----CCEEEEEECCCc---cccc----------CCCcceEEecCCCc
Confidence 3778899965 1 5666654 378888876522 0000 11123445589999
Q ss_pred eeEEEEcCC----C--CcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCC-----CCCeeEEEec----CCCCCe-
Q 015484 118 VNRARCMPQ----K--PNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGH-----DKEGYGLSWS----PFKEGY- 181 (406)
Q Consensus 118 v~~i~~~p~----~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~----~~~~~~- 181 (406)
|++++|+|+ + ..+|++++.||.|++|++...... .......+..| ...|.+++|+ |++. +
T Consensus 65 v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~ 140 (397)
T 1sq9_A 65 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET---KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS-HR 140 (397)
T ss_dssp EEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT---CCEEEEEECCSCTTGGGSCEEEEEEECCC----C-EE
T ss_pred EEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccc---ccccceeecccccccCCCcEEEEEEeeccCCCCc-eE
Confidence 999999998 4 047999999999999999873210 00015567778 5899999999 9888 8
Q ss_pred EEEecCCCeEEEEeCCC------ccCCceeeeeeee-------eccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC
Q 015484 182 LVSGSHDNKICLWDVSA------LAQDKVIDAMHVY-------EAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN 248 (406)
Q Consensus 182 l~s~~~dg~i~iwd~~~------~~~~~~~~~~~~~-------~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~ 248 (406)
|++|+.||.|++||+.. ..... +.+...+ ..|...|.+++|+| ++ ++++++.||.|++||++++
T Consensus 141 l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~ 217 (397)
T 1sq9_A 141 LVATDVKGTTYIWKFHPFADESNSLTLN-WSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTL 217 (397)
T ss_dssp EEEEETTSCEEEEEEESSSSHHHHTTTC-CCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTT
T ss_pred EEEEeCCCcEEEEeCCccccccccceee-ccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCC
Confidence 99999999999999988 44332 1111134 34788999999999 45 9999999999999999999
Q ss_pred cccccccc---c---CCCeeEEEecCCCCcEEEEEeCC---CcEEEEeCCCCCCCcEEecC-------------CCCCeE
Q 015484 249 QTQQRVKA---H---EKEVNYLSFNPYNEWVLATASSD---TTVALFDMRKMTVPLHILSS-------------HTEEVF 306 (406)
Q Consensus 249 ~~~~~~~~---~---~~~v~~i~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~-------------h~~~v~ 306 (406)
+.+..+.. | ...|.+++|+|++. +|++++.| |.|++||+++... +..+.. |...|.
T Consensus 218 ~~~~~~~~~~~h~~~~~~i~~i~~~~~~~-~l~~~~~d~~~g~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~ 295 (397)
T 1sq9_A 218 RPLYNFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGER-IGSLSVPTHSSQASLGEFAHSSWVM 295 (397)
T ss_dssp EEEEEEECCC---CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETTTCCE-EEEECBC--------CCBSBSSCEE
T ss_pred ceeEEEeccccccccCCccceEEECCCCC-EEEEEecCCCCceEEEEECCCCcc-cceeccCcccccccccccccCCcEE
Confidence 88888887 8 99999999999998 89999999 9999999998654 777877 999999
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEec------CC---------------CCCeeeE
Q 015484 307 QVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG------GH---------------KAKISDF 365 (406)
Q Consensus 307 ~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------~h---------------~~~v~~~ 365 (406)
+++|+|+++ +|++++.||.|++||+.. ...+..+. +| ...|.++
T Consensus 296 ~~~~~~~~~-~l~~~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~ 360 (397)
T 1sq9_A 296 SLSFNDSGE-TLCSAGWDGKLRFWDVKT--------------KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV 360 (397)
T ss_dssp EEEECSSSS-EEEEEETTSEEEEEETTT--------------TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEE
T ss_pred EEEECCCCC-EEEEEeCCCeEEEEEcCC--------------CceeEEEecccCcccchhhhhccccccccccCCceeEE
Confidence 999999997 699999999999999986 34555555 66 8999999
Q ss_pred EeCCCC----------CcEEEEEeCCCcEEEEeCCCc
Q 015484 366 SWNKND----------PWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 366 ~~s~~~----------~~~l~s~~~dg~i~iw~~~~~ 392 (406)
+|+|++ + +|++++.||.|++|++.++
T Consensus 361 ~~~~~g~~~~~~~~~~~-~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 361 KFLKKGWRSGMGADLNE-SLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp EEECTTTSBSTTCTTSC-EEEEEETTTEEEEEEEEC-
T ss_pred Eeccccccccccccccc-eEEEecCCCcEEEEEcCCC
Confidence 999998 5 7999999999999999876
No 49
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=7.1e-35 Score=289.11 Aligned_cols=304 Identities=16% Similarity=0.192 Sum_probs=224.0
Q ss_pred CceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCCce
Q 015484 39 PSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEV 118 (406)
Q Consensus 39 p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 118 (406)
+..++.|.|+.. ..++.|.. ++.|.+|++.-. ... .........+|.+.|
T Consensus 384 ~V~~v~~~~~~~-----------~~l~s~s~-----D~~i~~W~~~~~--~~~------------~~~~~~~~~~h~~~v 433 (694)
T 3dm0_A 384 MVTAIATPIDNA-----------DIIVSASR-----DKSIILWKLTKD--DKA------------YGVAQRRLTGHSHFV 433 (694)
T ss_dssp CEEEEECCTTCC-----------SEEEEEET-----TSEEEEEECCCS--TTC------------SCEEEEEEECCSSCE
T ss_pred eeEEEEecCCCC-----------CEEEEEeC-----CCcEEEEEccCC--Ccc------------cccccceecCCCCcE
Confidence 567777766321 13445544 377888865521 000 113344566899999
Q ss_pred eEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCC
Q 015484 119 NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSA 198 (406)
Q Consensus 119 ~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~ 198 (406)
++++|+|++ .+|++|+.||+|+|||+.+. .....+.+|...|.+++|+|++. +|++|+.|++|++||+..
T Consensus 434 ~~v~~s~~g-~~l~sgs~Dg~v~vwd~~~~--------~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~ 503 (694)
T 3dm0_A 434 EDVVLSSDG-QFALSGSWDGELRLWDLAAG--------VSTRRFVGHTKDVLSVAFSLDNR-QIVSASRDRTIKLWNTLG 503 (694)
T ss_dssp EEEEECTTS-SEEEEEETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTS
T ss_pred EEEEECCCC-CEEEEEeCCCcEEEEECCCC--------cceeEEeCCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEECCC
Confidence 999999999 68999999999999999873 33667889999999999999998 999999999999999865
Q ss_pred ccCCceeeeeeeeeccCccEEEEEeeCCC-CCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEE
Q 015484 199 LAQDKVIDAMHVYEAHESVVEDVSWHLKN-ENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATA 277 (406)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~i~~i~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~ 277 (406)
... ........+|...|.+++|+|.+ ...+++++.||.|++||+++++....+.+|...|++++|+|++. +|++|
T Consensus 504 ~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~-~l~sg 579 (694)
T 3dm0_A 504 ECK---YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS-LCASG 579 (694)
T ss_dssp CEE---EEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEE
T ss_pred Ccc---eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCC-EEEEE
Confidence 321 11112224688899999999954 36899999999999999999998888999999999999999998 99999
Q ss_pred eCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCC-----eeE
Q 015484 278 SSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP-----ELL 352 (406)
Q Consensus 278 ~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~~~ 352 (406)
+.||.|++||+++... +..+. +...|.+++|+|++. +|+++ .++.|+|||++................ ...
T Consensus 580 ~~Dg~i~iwd~~~~~~-~~~~~-~~~~v~~~~~sp~~~-~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (694)
T 3dm0_A 580 GKDGVVLLWDLAEGKK-LYSLE-ANSVIHALCFSPNRY-WLCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGP 655 (694)
T ss_dssp ETTSBCEEEETTTTEE-EECCB-CSSCEEEEEECSSSS-EEEEE-ETTEEEEEETTTTEEEEEECCCCC-----------
T ss_pred eCCCeEEEEECCCCce-EEEec-CCCcEEEEEEcCCCc-EEEEE-cCCCEEEEECCCCCChhhhcccccccccccccccc
Confidence 9999999999998654 44444 456899999999985 45555 467799999987332111100000000 000
Q ss_pred EEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 353 FSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 353 ~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
.....+...+++++|+|+|+ +|++|+.||.|+||++..
T Consensus 656 ~~~~~~~~~~~~l~~spdg~-~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 656 AATKRKVIYCTSLNWSADGS-TLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp -----CCCCEEEEEECTTSS-EEEEEETTSEEEEEEC--
T ss_pred ccCCceeEEeeeEEEcCCCC-EEEEEcCCCeEEEEeccC
Confidence 00112233478999999999 699999999999999863
No 50
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=5.1e-35 Score=269.55 Aligned_cols=267 Identities=18% Similarity=0.279 Sum_probs=209.3
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
....+|.+.|++++|+|+++.+|++|+.||.|+|||+..... .......+|...|.+++|+|++..+|++++.|
T Consensus 67 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 140 (383)
T 3ei3_B 67 RTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK------TSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR 140 (383)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC------EEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred EeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc------ceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence 344579999999999999867899999999999999987322 11223347999999999999443399999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
|.|++||+... .+..+.....|...|.+++|+| ++.+|++++.||.|++||+ .++.+..+..|...|.+++|+|
T Consensus 141 ~~i~iwd~~~~----~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~ 214 (383)
T 3ei3_B 141 GATTLRDFSGS----VIQVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP 214 (383)
T ss_dssp TEEEEEETTSC----EEEEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS
T ss_pred CEEEEEECCCC----ceEEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC
Confidence 99999999852 2222233334558899999999 6889999999999999999 4677788888999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCC---CCcEEecCCCCCeEEEEEcC-CCCCEEEEEeCCCcEEEEeCCCCCcccccccc
Q 015484 269 YNEWVLATASSDTTVALFDMRKMT---VPLHILSSHTEEVFQVEWDP-NHETVLASSADDRRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~h~~~v~~i~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 344 (406)
+++.+|++++.|+.|++||+++.. ..+..+ .|...|.+++|+| ++. +|++++.|+.|++||++...........
T Consensus 215 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 292 (383)
T 3ei3_B 215 RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDST-KLLTTDQRNEIRVYSSYDWSKPDQIIIH 292 (383)
T ss_dssp SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSC-EEEEEESSSEEEEEETTBTTSCSEEEEC
T ss_pred CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCC-EEEEEcCCCcEEEEECCCCccccccccc
Confidence 998789999999999999999743 223334 7999999999999 886 6999999999999999875432211100
Q ss_pred -----------------------------------cC--------CCCeeEEEecC--CCCCeeeEEeCCCCCcEEEEEe
Q 015484 345 -----------------------------------ED--------GPPELLFSHGG--HKAKISDFSWNKNDPWVISSVA 379 (406)
Q Consensus 345 -----------------------------------~~--------~~~~~~~~~~~--h~~~v~~~~~s~~~~~~l~s~~ 379 (406)
.+ ....++..+.+ |...+..++|+|+++ +|++++
T Consensus 293 ~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~-~l~s~s 371 (383)
T 3ei3_B 293 PHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGD-VLASGM 371 (383)
T ss_dssp CBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSS-EEEEEE
T ss_pred cccccccccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCcc-EEEEec
Confidence 01 12334455554 456677789999999 688887
Q ss_pred CCCcEEEEeCCC
Q 015484 380 DDNTVQVWQMTD 391 (406)
Q Consensus 380 ~dg~i~iw~~~~ 391 (406)
|+.|+||++.+
T Consensus 372 -d~~i~iw~~~~ 382 (383)
T 3ei3_B 372 -GFNILIWNRED 382 (383)
T ss_dssp -TTEEEEEECC-
T ss_pred -CCcEEEEecCC
Confidence 99999999875
No 51
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=4e-36 Score=274.83 Aligned_cols=307 Identities=12% Similarity=0.102 Sum_probs=222.3
Q ss_pred cCCCCCCceEEEEecCCCCCCCCCCCceeEEEEEeec--CCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEE--
Q 015484 33 SHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTH--TSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEI-- 108 (406)
Q Consensus 33 ~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~--~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 108 (406)
.+.+.+|.++++|.|+. +.++.|.. +..+.+|.|.++++....... ...+..
T Consensus 10 ~~~~g~PV~sv~fs~dg------------~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~------------~~~~~~~~ 65 (365)
T 4h5i_A 10 SYNVGYPAYGAKFLNND------------TLLVAGGGGEGNNGIPNKLTVLRVDPTKDTE------------KEQFHILS 65 (365)
T ss_dssp EEECSSCEEEEEEEETT------------EEEEEEECCSSSSSCCEEEEEEEECTTSSSH------------HHHEEEEE
T ss_pred ecCCCCCEEEEEEeCCC------------cEEEEECCCccccCCCCEEEEEEEcCCCcce------------eeeeeeee
Confidence 45678999999999942 34555543 223568999999887441100 011222
Q ss_pred -EEEeecCCceeEEEEcCCCCcEEEEE-----------eCCCeEEEEeCCCccccccC-CCCCceeeeCCCCCeeEEEec
Q 015484 109 -AQKIRVDGEVNRARCMPQKPNLVGTK-----------TSSCEVYVFDCAKQAEKQQD-DCDPDLRLKGHDKEGYGLSWS 175 (406)
Q Consensus 109 -~~~~~h~~~v~~i~~~p~~~~~l~~~-----------~~dg~i~iw~~~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~~ 175 (406)
...-.|...|.++++.+ ..+++| +.|+.+++|++......... ..........+...+.+++|+
T Consensus 66 ~~~l~~~~~~v~s~~~~~---~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fS 142 (365)
T 4h5i_A 66 EFALEDNDDSPTAIDASK---GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYIS 142 (365)
T ss_dssp EEECCTTSCCCCEEEEET---TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEEC
T ss_pred EEEccCCCCceEEEEeCC---CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEc
Confidence 22335778888888765 345554 45778999998764321100 000011122345668899999
Q ss_pred CCCCCeEE--EecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccc-
Q 015484 176 PFKEGYLV--SGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ- 252 (406)
Q Consensus 176 ~~~~~~l~--s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~- 252 (406)
|+|+ +|+ +++.|++|++||+.++.. +..+ .|...|.+++|+| ++.++++++.+ .+.+|+..+++.+.
T Consensus 143 pDg~-~la~as~~~d~~i~iwd~~~~~~------~~~~-~~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~~~~~ 212 (365)
T 4h5i_A 143 REGT-VAAIASSKVPAIMRIIDPSDLTE------KFEI-ETRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGSCIAR 212 (365)
T ss_dssp TTSS-CEEEEESCSSCEEEEEETTTTEE------EEEE-ECSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCCEEEE
T ss_pred CCCC-EEEEEECCCCCEEEEeECCCCcE------EEEe-CCCCceEEEEEcc-CCceEEeccce-eEEEEEeccCcceee
Confidence 9998 765 455799999999988643 2333 3678899999999 78888888755 57777777776543
Q ss_pred -cccccCCCeeEEEecCCCCcEEEEEeCCC----cEEEEeCCCCCCC---cEEecCCCCCeEEEEEcCCCCCEEEEEeCC
Q 015484 253 -RVKAHEKEVNYLSFNPYNEWVLATASSDT----TVALFDMRKMTVP---LHILSSHTEEVFQVEWDPNHETVLASSADD 324 (406)
Q Consensus 253 -~~~~~~~~v~~i~~~~~~~~~l~~~~~dg----~i~vwd~~~~~~~---~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d 324 (406)
....|...|.+++|+|++. ++++++.|+ .+++||+...... ...+..|...|++++|+|+++ +||+|+.|
T Consensus 213 ~~~~~~~~~v~~v~fspdg~-~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~-~lasgs~D 290 (365)
T 4h5i_A 213 KTDFDKNWSLSKINFIADDT-VLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE-LAVLASND 290 (365)
T ss_dssp ECCCCTTEEEEEEEEEETTE-EEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC-EEEEEETT
T ss_pred eecCCCCCCEEEEEEcCCCC-EEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCC-ceEEEcCC
Confidence 3356788899999999998 888888776 5888888764421 345778999999999999997 79999999
Q ss_pred CcEEEEeCCCCCcccccccccCCCCeeEEE-ecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 325 RRLMVWDLNRIGDEQLELDAEDGPPELLFS-HGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 325 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
+.|+|||+.+ .+++.. ..+|...|++++|+|+|+ +|+||+.|++|+||++..+.
T Consensus 291 ~~V~iwd~~~--------------~~~~~~~~~gH~~~V~~v~fSpdg~-~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 291 NSIALVKLKD--------------LSMSKIFKQAHSFAITEVTISPDST-YVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp SCEEEEETTT--------------TEEEEEETTSSSSCEEEEEECTTSC-EEEEEETTSEEEEEECCTTT
T ss_pred CEEEEEECCC--------------CcEEEEecCcccCCEEEEEECCCCC-EEEEEeCCCeEEEEEcCCCC
Confidence 9999999986 355555 478999999999999999 79999999999999997654
No 52
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-34 Score=267.41 Aligned_cols=260 Identities=18% Similarity=0.196 Sum_probs=214.3
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
|.+.|++++|+|++ .+|++|+.||.|++|+... .....+.+|...|.+++|+|++. +|++++.||.|++
T Consensus 107 ~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i 175 (425)
T 1r5m_A 107 TTNQVTCLAWSHDG-NSIVTGVENGELRLWNKTG---------ALLNVLNFHRAPIVSVKWNKDGT-HIISMDVENVTIL 175 (425)
T ss_dssp -CBCEEEEEECTTS-SEEEEEETTSCEEEEETTS---------CEEEEECCCCSCEEEEEECTTSS-EEEEEETTCCEEE
T ss_pred CCCceEEEEEcCCC-CEEEEEeCCCeEEEEeCCC---------CeeeeccCCCccEEEEEECCCCC-EEEEEecCCeEEE
Confidence 67799999999998 6899999999999999332 34667888999999999999988 9999999999999
Q ss_pred EeCCCccCCcee--------------------------------------------------eeeeeeeccCccEEEEEe
Q 015484 194 WDVSALAQDKVI--------------------------------------------------DAMHVYEAHESVVEDVSW 223 (406)
Q Consensus 194 wd~~~~~~~~~~--------------------------------------------------~~~~~~~~~~~~i~~i~~ 223 (406)
||+.++.....+ .....+..|...|.+++|
T Consensus 176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 255 (425)
T 1r5m_A 176 WNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEF 255 (425)
T ss_dssp EETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEE
T ss_pred EECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEE
Confidence 999765321111 112344568889999999
Q ss_pred eCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCC
Q 015484 224 HLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTE 303 (406)
Q Consensus 224 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~ 303 (406)
+| ++.+|++++.||.|++||+++++.+..+..|...|.+++|+|++ ++++++.||.|++||+++... +..+..|..
T Consensus 256 ~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~ 331 (425)
T 1r5m_A 256 ND-TNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTL-LALSIVDGV 331 (425)
T ss_dssp ET-TTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEE-EEEEECTTC
T ss_pred CC-CCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcE-eEecccCCc
Confidence 99 67899999999999999999999888888899999999999988 799999999999999998654 778888999
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc------cCCCCeeEEEecCCCC--CeeeEEeCCCCCcEE
Q 015484 304 EVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA------EDGPPELLFSHGGHKA--KISDFSWNKNDPWVI 375 (406)
Q Consensus 304 ~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~h~~--~v~~~~~s~~~~~~l 375 (406)
.|.+++|+|+++ +|++++.||.|++||+............ ...+..++..+.+|.. .|.+++|+|+++ +|
T Consensus 332 ~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l 409 (425)
T 1r5m_A 332 PIFAGRISQDGQ-KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGN-KI 409 (425)
T ss_dssp CEEEEEECTTSS-EEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSS-EE
T ss_pred cEEEEEEcCCCC-EEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCc-eE
Confidence 999999999997 6999999999999999863311100000 0001236777888876 999999999999 68
Q ss_pred EEEeCCCcEEEEeCC
Q 015484 376 SSVADDNTVQVWQMT 390 (406)
Q Consensus 376 ~s~~~dg~i~iw~~~ 390 (406)
++++.||.|++|++.
T Consensus 410 ~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 410 SVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEESSSCCEEEECC
T ss_pred EEEecCceEEEEeec
Confidence 899999999999986
No 53
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=9.9e-35 Score=288.06 Aligned_cols=254 Identities=19% Similarity=0.310 Sum_probs=211.3
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
...+|.+.|++++|+|++..+|++|+.||+|+||++...... .......+.+|...|.+++|+|++. +|++|+.||
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~---~~~~~~~~~~h~~~v~~v~~s~~g~-~l~sgs~Dg 452 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA---YGVAQRRLTGHSHFVEDVVLSSDGQ-FALSGSWDG 452 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC---SCEEEEEEECCSSCEEEEEECTTSS-EEEEEETTS
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc---cccccceecCCCCcEEEEEECCCCC-EEEEEeCCC
Confidence 355799999999999988789999999999999999864221 1123457889999999999999998 999999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccc---cccccCCCeeEEEe
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ---RVKAHEKEVNYLSF 266 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~v~~i~~ 266 (406)
+|++||+.++. ....+.+|...|.+++|+| ++.+|++++.|+.|++||+....... ...+|...|.+++|
T Consensus 453 ~v~vwd~~~~~------~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~ 525 (694)
T 3dm0_A 453 ELRLWDLAAGV------STRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRF 525 (694)
T ss_dssp EEEEEETTTTE------EEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEE
T ss_pred cEEEEECCCCc------ceeEEeCCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEE
Confidence 99999998763 2356678999999999999 67888999999999999987543322 22568889999999
Q ss_pred cCCCC-cEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccccccc
Q 015484 267 NPYNE-WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAE 345 (406)
Q Consensus 267 ~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 345 (406)
+|++. .+|++|+.|+.|++||+++... ...+.+|...|++++|+|+++ +|++++.||.|++||++.
T Consensus 526 ~~~~~~~~l~s~s~d~~v~vwd~~~~~~-~~~~~~h~~~v~~v~~spdg~-~l~sg~~Dg~i~iwd~~~----------- 592 (694)
T 3dm0_A 526 SPNTLQPTIVSASWDKTVKVWNLSNCKL-RSTLAGHTGYVSTVAVSPDGS-LCASGGKDGVVLLWDLAE----------- 592 (694)
T ss_dssp CSCSSSCEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSS-EEEEEETTSBCEEEETTT-----------
T ss_pred eCCCCcceEEEEeCCCeEEEEECCCCcE-EEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCC-----------
Confidence 99862 3899999999999999998654 778899999999999999997 699999999999999987
Q ss_pred CCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 346 DGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 346 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
...+..+. +...|.+++|+|++. ++++++ |+.|+|||+.++.
T Consensus 593 ---~~~~~~~~-~~~~v~~~~~sp~~~-~l~~~~-~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 593 ---GKKLYSLE-ANSVIHALCFSPNRY-WLCAAT-EHGIKIWDLESKS 634 (694)
T ss_dssp ---TEEEECCB-CSSCEEEEEECSSSS-EEEEEE-TTEEEEEETTTTE
T ss_pred ---CceEEEec-CCCcEEEEEEcCCCc-EEEEEc-CCCEEEEECCCCC
Confidence 23444444 346799999999987 566654 6779999998874
No 54
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=8.2e-35 Score=282.56 Aligned_cols=245 Identities=24% Similarity=0.448 Sum_probs=214.5
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
....+|.+.|.+++|+|++ .+|++++.||.|++|+.... ....+.+|...|.+++|+|++. +|++|+.|
T Consensus 297 ~~~~~h~~~v~~~~~~~~~-~~l~t~~~d~~i~~w~~~~~---------~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~d 365 (577)
T 2ymu_A 297 QTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRNGQ---------HLQTLTGHSSSVWGVAFSPDGQ-TIASASDD 365 (577)
T ss_dssp EEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSC---------EEEEECCCSSCEEEEEECTTSS-EEEEEETT
T ss_pred EEEecCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCCC---------eeEEEeCCCCCEEEEEECCCCC-EEEEEeCC
Confidence 3445799999999999998 68999999999999998652 2456788999999999999998 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
|.|++|+... ..+..+..|...|.+++|+| ++++|++++.|+.|++||. +++.+..+..|...|++++|+|
T Consensus 366 g~v~~~~~~~-------~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~ 436 (577)
T 2ymu_A 366 KTVKLWNRNG-------QLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP 436 (577)
T ss_dssp SEEEEEETTC-------CEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT
T ss_pred CEEEEEcCCC-------CEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECC
Confidence 9999999643 12456678999999999999 6788999999999999995 5677778888999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGP 348 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 348 (406)
++. +|++++.|+.|++||... ..+..+.+|...|.+++|+|+++ +|++++.|+.|++||...
T Consensus 437 d~~-~l~~~~~d~~v~~w~~~~--~~~~~~~~~~~~v~~~~~spd~~-~las~~~d~~i~iw~~~~-------------- 498 (577)
T 2ymu_A 437 DDQ-TIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRNG-------------- 498 (577)
T ss_dssp TSS-EEEEEETTSEEEEEETTS--CEEEEEECCSSCEEEEEECTTSC-EEEEEETTSEEEEEETTS--------------
T ss_pred CCC-EEEEEcCCCEEEEEECCC--CEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCEEEEEcCCC--------------
Confidence 998 999999999999999753 34778899999999999999997 699999999999999653
Q ss_pred CeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 349 PELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 349 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
+++..+.+|...|++++|+|+++ +|++++.||.|++||.....
T Consensus 499 -~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~~dg~v~lwd~~~~~ 541 (577)
T 2ymu_A 499 -QLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRNGQL 541 (577)
T ss_dssp -CEEEEEECCSSCEEEEEECTTSS-CEEEEETTSEEEEECTTSCE
T ss_pred -CEEEEEeCCCCCEEEEEEcCCCC-EEEEEECcCEEEEEeCCCCE
Confidence 56677889999999999999999 58899999999999976543
No 55
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-36 Score=285.67 Aligned_cols=264 Identities=12% Similarity=0.133 Sum_probs=202.9
Q ss_pred EEeecCCceeEEEEcCCC-C-------cEEEE-------------------EeCCCeEEEEeCCCccccccCCCCCceee
Q 015484 110 QKIRVDGEVNRARCMPQK-P-------NLVGT-------------------KTSSCEVYVFDCAKQAEKQQDDCDPDLRL 162 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~-~-------~~l~~-------------------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 162 (406)
..+.+.+.|.+|+|+|++ . .+||+ ++.|++|+||++...... ......+
T Consensus 128 ~~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~----~~~~~~l 203 (524)
T 2j04_B 128 FIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLH----CVKVQTI 203 (524)
T ss_dssp EEEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCC----EEEEEEE
T ss_pred EEEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCC----ceEEEEE
Confidence 345678999999999975 1 45665 457889999998763210 0012346
Q ss_pred eCCCCCeeEEEecCCC-----CCeEEEecCCCeEEEEeCCCccCCc-----eeeeeeeeeccCccEEEEEeeCCCCCEEE
Q 015484 163 KGHDKEGYGLSWSPFK-----EGYLVSGSHDNKICLWDVSALAQDK-----VIDAMHVYEAHESVVEDVSWHLKNENLFG 232 (406)
Q Consensus 163 ~~h~~~v~~l~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~i~~i~~~p~~~~~l~ 232 (406)
.+|.+.|.+++|+|++ ..+||+|+.||+|++||+..+.... ...+...+.+|...|.+++|+| +..|+
T Consensus 204 ~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~--~~~la 281 (524)
T 2j04_B 204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS--PTTVV 281 (524)
T ss_dssp EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS--SSEEE
T ss_pred EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC--CCeEE
Confidence 6788999999999962 2399999999999999998764321 1122345678999999999997 35899
Q ss_pred EEecCCcEEEEECCCCcc-cccccccCCCeeEE--EecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCC--CeEE
Q 015484 233 SAGDDCQLMIWDLRTNQT-QQRVKAHEKEVNYL--SFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTE--EVFQ 307 (406)
Q Consensus 233 ~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~i--~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~--~v~~ 307 (406)
+|+.||+|++||++++.. ...+.+|...|+++ +|+|++..+|++|+.|++|+|||+++... +..+.+|.. .|.+
T Consensus 282 sgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~-~~~~~~~~~~~~v~~ 360 (524)
T 2j04_B 282 CGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT-TKTTVSRFRGSNLVP 360 (524)
T ss_dssp EEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH-HCEEEEECSCCSCCC
T ss_pred EEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc-ccccccccccCcccc
Confidence 999999999999997643 45578899999999 57887733999999999999999997654 445555543 5889
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEE
Q 015484 308 VEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387 (406)
Q Consensus 308 i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw 387 (406)
++|+|+++ .+++++.|++|++||++. ...+..+.+|...|++++|+|+++ +|++|+.||.|++|
T Consensus 361 v~fsp~~~-~l~s~~~d~tv~lwd~~~--------------~~~~~~l~gH~~~V~sva~Sp~g~-~l~Sgs~Dgtv~lw 424 (524)
T 2j04_B 361 VVYCPQIY-SYIYSDGASSLRAVPSRA--------------AFAVHPLVSRETTITAIGVSRLHP-MVLAGSADGSLIIT 424 (524)
T ss_dssp EEEETTTT-EEEEECSSSEEEEEETTC--------------TTCCEEEEECSSCEEEEECCSSCC-BCEEEETTTEEECC
T ss_pred eEeCCCcC-eEEEeCCCCcEEEEECcc--------------cccceeeecCCCceEEEEeCCCCC-eEEEEECCCEEEEE
Confidence 99999987 589999999999999987 233345667999999999999999 58999999999999
Q ss_pred eCCCcccCC
Q 015484 388 QMTDSIYRD 396 (406)
Q Consensus 388 ~~~~~~~~~ 396 (406)
++..+.+..
T Consensus 425 d~~~~~~~~ 433 (524)
T 2j04_B 425 NAARRLLHG 433 (524)
T ss_dssp BSCSSTTTC
T ss_pred echHhhccc
Confidence 998775543
No 56
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.2e-34 Score=265.60 Aligned_cols=304 Identities=17% Similarity=0.199 Sum_probs=231.9
Q ss_pred CCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEE-EeecCC
Q 015484 38 WPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQ-KIRVDG 116 (406)
Q Consensus 38 ~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~ 116 (406)
-|..++.|.|+. ..++.|+. ++.|.++++.-. +++... ..+|.+
T Consensus 9 ~~i~~~~~s~~~------------~~l~~~~~-----d~~v~i~~~~~~------------------~~~~~~~~~~h~~ 53 (372)
T 1k8k_C 9 EPISCHAWNKDR------------TQIAICPN-----NHEVHIYEKSGN------------------KWVQVHELKEHNG 53 (372)
T ss_dssp SCCCEEEECTTS------------SEEEEECS-----SSEEEEEEEETT------------------EEEEEEEEECCSS
T ss_pred CCeEEEEECCCC------------CEEEEEeC-----CCEEEEEeCCCC------------------cEEeeeeecCCCC
Confidence 377899998742 14555543 478998877621 122333 346999
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeC
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV 196 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 196 (406)
.|++++|+|++ .+|++++.||.|++|++.... ......+..|...|.+++|+|++. +|++|+.||.|++||+
T Consensus 54 ~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~ 125 (372)
T 1k8k_C 54 QVTGVDWAPDS-NRIVTCGTDRNAYVWTLKGRT------WKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYF 125 (372)
T ss_dssp CEEEEEEETTT-TEEEEEETTSCEEEEEEETTE------EEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEE
T ss_pred cccEEEEeCCC-CEEEEEcCCCeEEEEECCCCe------eeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEe
Confidence 99999999988 689999999999999997632 122344567899999999999988 9999999999999999
Q ss_pred CCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECC------------------CCcccccccccC
Q 015484 197 SALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR------------------TNQTQQRVKAHE 258 (406)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~------------------~~~~~~~~~~~~ 258 (406)
+........ ......|...|.+++|+| ++.+|++++.||.|++||++ .++.+..+..|.
T Consensus 126 ~~~~~~~~~--~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (372)
T 1k8k_C 126 EQENDWWVC--KHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC 202 (372)
T ss_dssp ETTTTEEEE--EEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS
T ss_pred cCCCcceee--eeeecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCC
Confidence 876431111 122356788999999999 68899999999999999964 556677777899
Q ss_pred CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcc
Q 015484 259 KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE 338 (406)
Q Consensus 259 ~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 338 (406)
..|.+++|+|++. +|++++.||.|++||+++.+. +..+..|...|.+++|+|++. +|+++ .|+.|++|++......
T Consensus 203 ~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~~~-~d~~i~i~~~~~~~~~ 278 (372)
T 1k8k_C 203 GWVHGVCFSANGS-RVAWVSHDSTVCLADADKKMA-VATLASETLPLLAVTFITESS-LVAAG-HDCFPVLFTYDSAAGK 278 (372)
T ss_dssp SCEEEEEECSSSS-EEEEEETTTEEEEEEGGGTTE-EEEEECSSCCEEEEEEEETTE-EEEEE-TTSSCEEEEEETTTTE
T ss_pred CeEEEEEECCCCC-EEEEEeCCCEEEEEECCCCce-eEEEccCCCCeEEEEEecCCC-EEEEE-eCCeEEEEEccCcCce
Confidence 9999999999998 999999999999999998654 788889999999999999986 56666 8999999999761110
Q ss_pred ccc---ccc-----------------cCCCCeeE------EEe-cCCCCCeeeEEeC-CCC---CcEEEEEeCCCcEEEE
Q 015484 339 QLE---LDA-----------------EDGPPELL------FSH-GGHKAKISDFSWN-KND---PWVISSVADDNTVQVW 387 (406)
Q Consensus 339 ~~~---~~~-----------------~~~~~~~~------~~~-~~h~~~v~~~~~s-~~~---~~~l~s~~~dg~i~iw 387 (406)
... ... .+...... ..+ .+|...|++++|+ ++| . +|++++.||.|++|
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~-~l~s~~~Dg~i~~W 357 (372)
T 1k8k_C 279 LSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS-QFCTTGMDGGMSIW 357 (372)
T ss_dssp EEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCS-EEEEEETTSEEEEE
T ss_pred EEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCccee-eEEEecCCCceEEE
Confidence 000 000 00001111 222 4899999999977 555 6 79999999999999
Q ss_pred eCCCc
Q 015484 388 QMTDS 392 (406)
Q Consensus 388 ~~~~~ 392 (406)
++.++
T Consensus 358 ~~~~~ 362 (372)
T 1k8k_C 358 DVRSL 362 (372)
T ss_dssp EHHHH
T ss_pred EecCh
Confidence 98764
No 57
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-33 Score=250.76 Aligned_cols=253 Identities=21% Similarity=0.253 Sum_probs=211.6
Q ss_pred EEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC
Q 015484 108 IAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 108 ~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
......|.+.|.+++|+|++ .+|++++.||.|++|++.... ...+...+.+|...|.+++| ++. +|++++.
T Consensus 52 ~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~--~~~-~l~~~~~ 122 (313)
T 3odt_A 52 GTVVYTGQGFLNSVCYDSEK-ELLLFGGKDTMINGVPLFATS-----GEDPLYTLIGHQGNVCSLSF--QDG-VVISGSW 122 (313)
T ss_dssp EEEEEECSSCEEEEEEETTT-TEEEEEETTSCEEEEETTCCT-----TSCC-CEECCCSSCEEEEEE--ETT-EEEEEET
T ss_pred EEEeecCCccEEEEEECCCC-CEEEEecCCCeEEEEEeeecC-----CCCcccchhhcccCEEEEEe--cCC-EEEEEeC
Confidence 34456789999999999998 689999999999999998742 23456778899999999999 355 9999999
Q ss_pred CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccc-cCCCeeEEEe
Q 015484 188 DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA-HEKEVNYLSF 266 (406)
Q Consensus 188 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~i~~ 266 (406)
||.|++||.. .....+..|...+.+++|+|.++.++++++.||.|++||. .+....+.. +...+.+++|
T Consensus 123 d~~i~~~d~~--------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~ 192 (313)
T 3odt_A 123 DKTAKVWKEG--------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAV 192 (313)
T ss_dssp TSEEEEEETT--------EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEE
T ss_pred CCCEEEEcCC--------cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEEEeccCcccEEEEEE
Confidence 9999999921 1235567789999999999877899999999999999993 444555555 8899999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC
Q 015484 267 NPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED 346 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 346 (406)
+|++. +++++.||.|++||+++.+. +..+..|...|.+++|+|++ . |++++.||.|++||+..
T Consensus 193 ~~~~~--~~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~-~-l~~~~~dg~v~iwd~~~------------ 255 (313)
T 3odt_A 193 VDDGH--FISCSNDGLIKLVDMHTGDV-LRTYEGHESFVYCIKLLPNG-D-IVSCGEDRTVRIWSKEN------------ 255 (313)
T ss_dssp EETTE--EEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECTTS-C-EEEEETTSEEEEECTTT------------
T ss_pred cCCCe--EEEccCCCeEEEEECCchhh-hhhhhcCCceEEEEEEecCC-C-EEEEecCCEEEEEECCC------------
Confidence 99886 88999999999999998654 78888999999999999999 4 88999999999999987
Q ss_pred CCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCCCccc
Q 015484 347 GPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDDDDF 400 (406)
Q Consensus 347 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 400 (406)
...+..+..|...|.+++|+|+++ +++++.||.|++|++.++.+..+...
T Consensus 256 --~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~iw~~~~~~~~~~~~~ 305 (313)
T 3odt_A 256 --GSLKQVITLPAISIWSVDCMSNGD--IIVGSSDNLVRIFSQEKSRWASEDEI 305 (313)
T ss_dssp --CCEEEEEECSSSCEEEEEECTTSC--EEEEETTSCEEEEESCGGGCCC----
T ss_pred --CceeEEEeccCceEEEEEEccCCC--EEEEeCCCcEEEEeCCCCceeehhhh
Confidence 356667778888999999999998 45688999999999999877655443
No 58
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=6.9e-35 Score=267.16 Aligned_cols=248 Identities=15% Similarity=0.185 Sum_probs=211.1
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
.|.++|++++|+|++ .+|++++.||.|++|++.... ......+.+|...|.+++|+|++. +|++++.||.|+
T Consensus 6 ~~~~~i~~~~~s~~~-~~l~~~~~d~~v~i~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~dg~i~ 77 (372)
T 1k8k_C 6 FLVEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGNK------WVQVHELKEHNGQVTGVDWAPDSN-RIVTCGTDRNAY 77 (372)
T ss_dssp SCSSCCCEEEECTTS-SEEEEECSSSEEEEEEEETTE------EEEEEEEECCSSCEEEEEEETTTT-EEEEEETTSCEE
T ss_pred ccCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCCCCc------EEeeeeecCCCCcccEEEEeCCCC-EEEEEcCCCeEE
Confidence 389999999999998 689999999999999998732 124677889999999999999888 999999999999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc---ccc-ccccCCCeeEEEecC
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT---QQR-VKAHEKEVNYLSFNP 268 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~---~~~-~~~~~~~v~~i~~~~ 268 (406)
+||+.++.. .....+..|...|.+++|+| ++.+|++++.||.|++||++.+.. ... ...|...|.+++|+|
T Consensus 78 vwd~~~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 152 (372)
T 1k8k_C 78 VWTLKGRTW----KPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP 152 (372)
T ss_dssp EEEEETTEE----EEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT
T ss_pred EEECCCCee----eeeEEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC
Confidence 999977532 12233456889999999999 678999999999999999998763 222 256789999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCC-----------------CCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 015484 269 YNEWVLATASSDTTVALFDMRK-----------------MTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWD 331 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~-----------------~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd 331 (406)
++. +|++++.||.|++||++. ...++..+..|...|.+++|+|+++ +|++++.||.|++||
T Consensus 153 ~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d 230 (372)
T 1k8k_C 153 NSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLAD 230 (372)
T ss_dssp TSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS-EEEEEETTTEEEEEE
T ss_pred CCC-EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC-EEEEEeCCCEEEEEE
Confidence 998 999999999999999752 2344677888999999999999997 699999999999999
Q ss_pred CCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 332 LNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
++. ...+..+..|...|.+++|+|++. +++++ .|+.|++|++.+
T Consensus 231 ~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 231 ADK--------------KMAVATLASETLPLLAVTFITESS-LVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp GGG--------------TTEEEEEECSSCCEEEEEEEETTE-EEEEE-TTSSCEEEEEET
T ss_pred CCC--------------CceeEEEccCCCCeEEEEEecCCC-EEEEE-eCCeEEEEEccC
Confidence 986 355667778999999999999998 57666 899999999988
No 59
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4e-35 Score=267.95 Aligned_cols=262 Identities=15% Similarity=0.271 Sum_probs=215.9
Q ss_pred eecCCceeEEEEcCC---CCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee-----CCCCCeeEEEecCC----CC
Q 015484 112 IRVDGEVNRARCMPQ---KPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK-----GHDKEGYGLSWSPF----KE 179 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~l~~~~~----~~ 179 (406)
.+|.+.|++++|+|+ +...+++++.++.|+||++..... ...+. .|...|++++|+|+ +.
T Consensus 15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 86 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE--------IRLLQSYVDADADENFYTCAWTYDSNTSHP 86 (366)
T ss_dssp CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGC--------EEEEEEEECSCTTCCEEEEEEEECTTTCCE
T ss_pred cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcE--------EEeeeeccccCCCCcEEEEEeccCCCCCCC
Confidence 369999999999984 445666677778999999986432 22232 36788999999998 44
Q ss_pred CeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc---cc
Q 015484 180 GYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV---KA 256 (406)
Q Consensus 180 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~ 256 (406)
+|++|+.||.|++||+.+++ .+..+..|...|.+++|+|.++.+|++++.||.|++||+++++.+..+ ..
T Consensus 87 -~l~~~~~dg~i~v~d~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 159 (366)
T 3k26_A 87 -LLAVAGSRGIIRIINPITMQ------CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG 159 (366)
T ss_dssp -EEEEEETTCEEEEECTTTCC------EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTS
T ss_pred -EEEEecCCCEEEEEEchhce------EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccc
Confidence 89999999999999998753 235567899999999999977899999999999999999999887776 67
Q ss_pred cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC---------------------------CcEEecCCCCCeEEEE
Q 015484 257 HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV---------------------------PLHILSSHTEEVFQVE 309 (406)
Q Consensus 257 ~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---------------------------~~~~~~~h~~~v~~i~ 309 (406)
|...|.+++|+|++. +|++++.||.|++||+++... .......|...|.+++
T Consensus 160 ~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (366)
T 3k26_A 160 HRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVR 238 (366)
T ss_dssp CSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEE
T ss_pred ccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEE
Confidence 999999999999998 999999999999999986432 1223334999999999
Q ss_pred EcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCC--CCcEEEEEeCCCcEEEE
Q 015484 310 WDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKN--DPWVISSVADDNTVQVW 387 (406)
Q Consensus 310 ~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~~l~s~~~dg~i~iw 387 (406)
|+ ++ +|++++.||.|++||+...................+..+.+|...|.+++|+|+ ++ +|++++.||.|++|
T Consensus 239 ~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~l~~~~~dg~i~vw 314 (366)
T 3k26_A 239 WL--GD-LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK-MLALGNQVGKLYVW 314 (366)
T ss_dssp EE--TT-EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS-EEEEECTTSCEEEE
T ss_pred Ec--CC-EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc-EEEEEecCCcEEEE
Confidence 99 44 799999999999999988655444443334444667888899999999999999 88 79999999999999
Q ss_pred eCCCcc
Q 015484 388 QMTDSI 393 (406)
Q Consensus 388 ~~~~~~ 393 (406)
++.++.
T Consensus 315 d~~~~~ 320 (366)
T 3k26_A 315 DLEVED 320 (366)
T ss_dssp ECCSSS
T ss_pred ECCCCC
Confidence 999864
No 60
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-36 Score=277.59 Aligned_cols=252 Identities=14% Similarity=0.195 Sum_probs=198.8
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
.|.++|++++|+|++ .+||+|+.||.|+||++.... ......+.+|...|.+++|+|++. +|++|+.||+|+
T Consensus 9 ~~~~~v~~~~~s~~g-~~l~~~~~d~~i~iw~~~~~~------~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~d~~v~ 80 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQR-TEFVTTTATNQVELYEQDGNG------WKHARTFSDHDKIVTCVDWAPKSN-RIVTCSQDRNAY 80 (377)
T ss_dssp ECSSCCSCCEECSSS-SEEECCCSSSCBCEEEEETTE------EEECCCBCCCSSCEEEEEECTTTC-CEEEEETTSSEE
T ss_pred cCCCcEEEEEECCCC-CEEEEecCCCEEEEEEccCCc------eEEEEEEecCCceEEEEEEeCCCC-EEEEEeCCCeEE
Confidence 367899999999998 689999999999999998731 133566789999999999999988 999999999999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc---cccccc-cCCCeeEEEecC
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT---QQRVKA-HEKEVNYLSFNP 268 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~-~~~~v~~i~~~~ 268 (406)
+||+.++.. ......+..|...|.+++|+| ++.+|++++.|+.|++||+++++. ...+.. |...|++++|+|
T Consensus 81 vwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 156 (377)
T 3dwl_C 81 VYEKRPDGT---WKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP 156 (377)
T ss_dssp EC------C---CCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT
T ss_pred EEEcCCCCc---eeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC
Confidence 999988651 223355667999999999999 678889999999999999998873 566666 899999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCC-----------------CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 015484 269 YNEWVLATASSDTTVALFDMRKMT-----------------VPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWD 331 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~-----------------~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd 331 (406)
++. +|++++.|+.|++||++... .++..+ .|...|.+++|+|+++ +|++++.||.|++||
T Consensus 157 ~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~-~l~~~~~d~~i~iwd 233 (377)
T 3dwl_C 157 NNV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN-ALAYAGHDSSVTIAY 233 (377)
T ss_dssp TSS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS-CEEEEETTTEEC-CE
T ss_pred CCC-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC-EEEEEeCCCcEEEEE
Confidence 998 99999999999999986321 123444 8999999999999997 599999999999999
Q ss_pred CCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 332 LNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
+..... +...+..+.+|...|.+++|+|+++ +|++++.|+. .+|+...
T Consensus 234 ~~~~~~----------~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~-~~~~~~~ 281 (377)
T 3dwl_C 234 PSAPEQ----------PPRALITVKLSQLPLRSLLWANESA-IVAAGYNYSP-ILLQGNE 281 (377)
T ss_dssp ECSTTS----------CEEECCCEECSSSCEEEEEEEETTE-EEEEESSSSE-EEECCCC
T ss_pred CCCCCC----------cceeeEeecCCCCceEEEEEcCCCC-EEEEEcCCcE-EEEEeCC
Confidence 987332 1122455678999999999999998 6888876554 5777663
No 61
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.8e-35 Score=270.65 Aligned_cols=301 Identities=18% Similarity=0.194 Sum_probs=215.2
Q ss_pred CceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEE-EEeecCCc
Q 015484 39 PSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIA-QKIRVDGE 117 (406)
Q Consensus 39 p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~ 117 (406)
|..++.|.|+. ..++.|+. ++.|.++++.-. ..+.. ...+|.+.
T Consensus 13 ~v~~~~~s~~g------------~~l~~~~~-----d~~i~iw~~~~~------------------~~~~~~~~~~h~~~ 57 (377)
T 3dwl_C 13 PSYEHAFNSQR------------TEFVTTTA-----TNQVELYEQDGN------------------GWKHARTFSDHDKI 57 (377)
T ss_dssp CCSCCEECSSS------------SEEECCCS-----SSCBCEEEEETT------------------EEEECCCBCCCSSC
T ss_pred cEEEEEECCCC------------CEEEEecC-----CCEEEEEEccCC------------------ceEEEEEEecCCce
Confidence 67788887742 14444433 467888877621 01111 22369999
Q ss_pred eeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCC
Q 015484 118 VNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVS 197 (406)
Q Consensus 118 v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~ 197 (406)
|++++|+|++ .+|++++.||.|+|||+.... ...+...+.+|...|.+++|+|++. +|++|+.|+.|++||++
T Consensus 58 v~~~~~s~~~-~~l~s~s~d~~v~vwd~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~ 130 (377)
T 3dwl_C 58 VTCVDWAPKS-NRIVTCSQDRNAYVYEKRPDG-----TWKQTLVLLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFE 130 (377)
T ss_dssp EEEEEECTTT-CCEEEEETTSSEEEC-----------CCCCEEECCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC-
T ss_pred EEEEEEeCCC-CEEEEEeCCCeEEEEEcCCCC-----ceeeeeEecccCCceEEEEECCCCC-EEEEEecCCeEEEEEEC
Confidence 9999999998 689999999999999998742 1345677888999999999999888 99999999999999998
Q ss_pred CccCCceeeeeeeeec-cCccEEEEEeeCCCCCEEEEEecCCcEEEEECCC------------------CcccccccccC
Q 015484 198 ALAQDKVIDAMHVYEA-HESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT------------------NQTQQRVKAHE 258 (406)
Q Consensus 198 ~~~~~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~------------------~~~~~~~~~~~ 258 (406)
.+... .....+.. |...|.+++|+| ++.+|++++.||.|++||++. ++.+..+ .|.
T Consensus 131 ~~~~~---~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 205 (377)
T 3dwl_C 131 QENDW---WVSKHLKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG 205 (377)
T ss_dssp ----C---CCCEEECSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS
T ss_pred Ccccc---eeeeEeecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCC
Confidence 76421 12344555 899999999999 688999999999999999853 3344555 789
Q ss_pred CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCC---cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 015484 259 KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVP---LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI 335 (406)
Q Consensus 259 ~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~ 335 (406)
..|++++|+|++. +|++++.||.|++||+++...+ +..+..|...|.+++|+|+++ +|++++.++.+ +|+....
T Consensus 206 ~~v~~~~~sp~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~-~~~~~~~ 282 (377)
T 3dwl_C 206 GWVHAVGFSPSGN-ALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESA-IVAAGYNYSPI-LLQGNES 282 (377)
T ss_dssp SSEEEEEECTTSS-CEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTE-EEEEESSSSEE-EECCCC-
T ss_pred ceEEEEEECCCCC-EEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCC-EEEEEcCCcEE-EEEeCCC
Confidence 9999999999999 8999999999999999987653 567788999999999999996 68787766555 7776532
Q ss_pred Ccc-cccccccCC--C-------------C---------eeEE-------------EecCCCCCeeeEEeCCCCCc---E
Q 015484 336 GDE-QLELDAEDG--P-------------P---------ELLF-------------SHGGHKAKISDFSWNKNDPW---V 374 (406)
Q Consensus 336 ~~~-~~~~~~~~~--~-------------~---------~~~~-------------~~~~h~~~v~~~~~s~~~~~---~ 374 (406)
+.. ......... . . .... ....|...|+++++.+.... .
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~ 362 (377)
T 3dwl_C 283 GWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITA 362 (377)
T ss_dssp --CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEE
T ss_pred ceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEE
Confidence 210 000000000 0 0 0000 11249999999998776543 5
Q ss_pred EEEEeCCCcEEEEeC
Q 015484 375 ISSVADDNTVQVWQM 389 (406)
Q Consensus 375 l~s~~~dg~i~iw~~ 389 (406)
|+|+|.||.|+|||+
T Consensus 363 ~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 363 FTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEEETTSEEEEECC
T ss_pred EEeecCCCcEEEecC
Confidence 899999999999986
No 62
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.3e-33 Score=263.38 Aligned_cols=247 Identities=20% Similarity=0.379 Sum_probs=208.4
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
.-+|...|++|+|+|++ .+||+|+.||+|+|||+.+. +....+.+|...+.+++|+ +. +|++|+.|+.
T Consensus 143 ~~~~~~~V~sv~fspdg-~~lasgs~Dg~v~iWd~~~~--------~~~~~~~~h~~~v~~~s~~--~~-~l~sgs~d~~ 210 (420)
T 4gga_A 143 MEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQ--------KRLRNMTSHSARVGSLSWN--SY-ILSSGSRSGH 210 (420)
T ss_dssp CCSTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTTT--------EEEEEECCCSSCEEEEEEE--TT-EEEEEETTSE
T ss_pred ecCCCCcEEEEEECCCC-CEEEEEECCCeEEEEEcCCC--------cEEEEEeCCCCceEEEeeC--CC-EEEEEeCCCc
Confidence 34688899999999999 68999999999999999874 3467788999999999886 45 8999999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc----cccccccCCCeeEEEe
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT----QQRVKAHEKEVNYLSF 266 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~v~~i~~ 266 (406)
+++||...... .+..+.+|...+..+.|+| .+.++++++.|+.+++||...++. +.....|...|.+++|
T Consensus 211 i~~~d~~~~~~-----~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~ 284 (420)
T 4gga_A 211 IHHHDVRVAEH-----HVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 284 (420)
T ss_dssp EEEEETTSSSC-----EEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEE
T ss_pred eeEeeecccce-----eeEEecccccceeeeeecC-CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeee
Confidence 99999876532 2456778999999999999 788999999999999999987754 3445678899999999
Q ss_pred cCCCCcEEEEE--eCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEE-eCCCcEEEEeCCCCCccccccc
Q 015484 267 NPYNEWVLATA--SSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASS-ADDRRLMVWDLNRIGDEQLELD 343 (406)
Q Consensus 267 ~~~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~ 343 (406)
+|.+..+++++ +.|+.|++||++++.. +..+.. ...+.++.|+|+++.+++++ +.|+.|+|||+.+
T Consensus 285 ~p~~~~~la~~~gs~D~~I~iwd~~t~~~-~~~~~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~--------- 353 (420)
T 4gga_A 285 CPWQSNVLATGGGTSDRHIRIWNVCSGAC-LSAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT--------- 353 (420)
T ss_dssp CTTCTTEEEEEECTTTCEEEEEETTTTEE-EEEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT---------
T ss_pred CCCcccEEEEEeecCCCEEEEEeCCcccc-ceeecc-ccceeeeeecCCCCeEEEEEecCCCEEEEEECCC---------
Confidence 99988788765 4799999999998664 555544 46799999999998644433 3799999999986
Q ss_pred ccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 344 AEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 344 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
..++..+.+|...|++++|+|+|+ +|+||+.|++|+|||+.+.
T Consensus 354 -----~~~v~~l~gH~~~V~~l~~spdg~-~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 354 -----MAKVAELKGHTSRVLSLTMSPDGA-TVASAAADETLRLWRCFEL 396 (420)
T ss_dssp -----CCEEEEECCCSSCEEEEEECTTSS-CEEEEETTTEEEEECCSCS
T ss_pred -----CcEEEEEcCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEECCCC
Confidence 467788899999999999999999 5899999999999999764
No 63
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.1e-34 Score=266.51 Aligned_cols=255 Identities=12% Similarity=0.161 Sum_probs=211.2
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC----C---CCeEEE
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF----K---EGYLVS 184 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~---~~~l~s 184 (406)
.+|.+.|++++|+| .+|++|+.||.|+||++....... .......+.+|...|.+++|+|+ + . +|++
T Consensus 13 ~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~-~l~s 86 (397)
T 1sq9_A 13 KAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNEN--PKDKSYSHFVHKSGLHHVDVLQAIERDAFELC-LVAT 86 (397)
T ss_dssp SCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCC--GGGGEEEEECCTTCEEEEEEEEEEETTTEEEE-EEEE
T ss_pred hhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCccccc--CCCcceEEecCCCcEEEEEEecccccCCcccc-EEEE
Confidence 36999999999998 479999999999999998743110 12246778899999999999998 7 7 9999
Q ss_pred ecCCCeEEEEeCCCccCCceeeeeeeeecc-----CccEEEEEee----CCCCCE-EEEEecCCcEEEEECCC------C
Q 015484 185 GSHDNKICLWDVSALAQDKVIDAMHVYEAH-----ESVVEDVSWH----LKNENL-FGSAGDDCQLMIWDLRT------N 248 (406)
Q Consensus 185 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~i~~i~~~----p~~~~~-l~~~~~dg~i~i~d~~~------~ 248 (406)
++.||.|++||+.++..... .....+..| ...|.+++|+ | ++.+ |++++.||.|++||+++ +
T Consensus 87 ~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 164 (397)
T 1sq9_A 87 TSFSGDLLFYRITREDETKK-VIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFADESNS 164 (397)
T ss_dssp EETTSCEEEEEEEECTTTCC-EEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred EcCCCCEEEEEccCCccccc-ccceeecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCcccccccc
Confidence 99999999999987653111 113455666 5899999999 8 5777 99999999999999998 6
Q ss_pred cccc-----cc-------cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC---C---CCCeEEEEE
Q 015484 249 QTQQ-----RV-------KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS---H---TEEVFQVEW 310 (406)
Q Consensus 249 ~~~~-----~~-------~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---h---~~~v~~i~~ 310 (406)
+.+. .+ ..|...|.+++|+|++ +|++++.||.|++||+++.. ++..+.. | ...|.+++|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~h~~~~~~i~~i~~ 241 (397)
T 1sq9_A 165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLR-PLYNFESQHSMINNSNSIRSVKF 241 (397)
T ss_dssp TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTE-EEEEEECCC---CCCCCEEEEEE
T ss_pred ceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCc-eeEEEeccccccccCCccceEEE
Confidence 6666 66 3478899999999988 89999999999999999855 4777888 8 999999999
Q ss_pred cCCCCCEEEEEeCC---CcEEEEeCCCCCcccccccccCCCCeeEEEecC-------------CCCCeeeEEeCCCCCcE
Q 015484 311 DPNHETVLASSADD---RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG-------------HKAKISDFSWNKNDPWV 374 (406)
Q Consensus 311 ~p~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------------h~~~v~~~~~s~~~~~~ 374 (406)
+|++. +|++++.| |.|++||++. ...+..+.+ |...|.+++|+|+++ +
T Consensus 242 ~~~~~-~l~~~~~d~~~g~i~i~d~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~ 305 (397)
T 1sq9_A 242 SPQGS-LLAIAHDSNSFGCITLYETEF--------------GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-T 305 (397)
T ss_dssp CSSTT-EEEEEEEETTEEEEEEEETTT--------------CCEEEEECBC--------CCBSBSSCEEEEEECSSSS-E
T ss_pred CCCCC-EEEEEecCCCCceEEEEECCC--------------CcccceeccCcccccccccccccCCcEEEEEECCCCC-E
Confidence 99987 69999999 9999999986 244555566 899999999999999 6
Q ss_pred EEEEeCCCcEEEEeCCCcc
Q 015484 375 ISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 375 l~s~~~dg~i~iw~~~~~~ 393 (406)
|++++.||.|++|++.++.
T Consensus 306 l~~~~~dg~i~iwd~~~~~ 324 (397)
T 1sq9_A 306 LCSAGWDGKLRFWDVKTKE 324 (397)
T ss_dssp EEEEETTSEEEEEETTTTE
T ss_pred EEEEeCCCeEEEEEcCCCc
Confidence 8999999999999998764
No 64
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.8e-34 Score=262.81 Aligned_cols=263 Identities=13% Similarity=0.243 Sum_probs=209.5
Q ss_pred CCeEEEEEeecCCceeEEEEcCCCCcEEEEEeC---CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC---
Q 015484 104 PKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTS---SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF--- 177 (406)
Q Consensus 104 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--- 177 (406)
+.+......+|.+.|++++|+|+++.++++|+. ||.|+||++..... . .....+|...|.+++|+|+
T Consensus 7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~------~-~~~~~~~~~~v~~~~~~~~~~~ 79 (357)
T 3i2n_A 7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDL------K-LLREIEKAKPIKCGTFGATSLQ 79 (357)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSE------E-EEEEEEESSCEEEEECTTCCTT
T ss_pred hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcc------c-ceeeecccCcEEEEEEcCCCCC
Confidence 344445556799999999999999778888877 99999999987422 1 1223378999999999998
Q ss_pred CCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEe------eCCCCCEEEEEecCCcEEEEECCCCc-c
Q 015484 178 KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSW------HLKNENLFGSAGDDCQLMIWDLRTNQ-T 250 (406)
Q Consensus 178 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~------~p~~~~~l~~~~~dg~i~i~d~~~~~-~ 250 (406)
+. +|++|+.||.|++||+.++.. ....+..|...|.+++| +| ++.+|++++.||.|++||+++++ .
T Consensus 80 ~~-~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~ 152 (357)
T 3i2n_A 80 QR-YLATGDFGGNLHIWNLEAPEM-----PVYSVKGHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDP 152 (357)
T ss_dssp TC-CEEEEETTSCEEEECTTSCSS-----CSEEECCCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSC
T ss_pred Cc-eEEEecCCCeEEEEeCCCCCc-----cEEEEEecccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCc
Confidence 45 999999999999999988651 23556789999999965 55 67899999999999999999887 5
Q ss_pred cccccccCC----CeeEEE----ecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcC---CCCCEEE
Q 015484 251 QQRVKAHEK----EVNYLS----FNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDP---NHETVLA 319 (406)
Q Consensus 251 ~~~~~~~~~----~v~~i~----~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p---~~~~~l~ 319 (406)
+..+..+.. .+.+++ |+|++. +|++++.||.|++||+++... .....|...|.+++|+| ++. +|+
T Consensus 153 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~-~l~ 228 (357)
T 3i2n_A 153 VANMEPVQGENKRDCWTVAFGNAYNQEER-VVCAGYDNGDIKLFDLRNMAL--RWETNIKNGVCSLEFDRKDISMN-KLV 228 (357)
T ss_dssp SEEECCCTTSCCCCEEEEEEECCCC-CCC-EEEEEETTSEEEEEETTTTEE--EEEEECSSCEEEEEESCSSSSCC-EEE
T ss_pred ceeccccCCCCCCceEEEEEEeccCCCCC-EEEEEccCCeEEEEECccCce--eeecCCCCceEEEEcCCCCCCCC-EEE
Confidence 666654443 788998 788888 999999999999999998653 44567889999999999 776 699
Q ss_pred EEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 320 SSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 320 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
+++.||.|++||++...... ........+|...|.+++|+|+++.++++++.||.|++|++..+.
T Consensus 229 ~~~~dg~i~i~d~~~~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 229 ATSLEGKFHVFDMRTQHPTK---------GFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp EEESTTEEEEEEEEEEETTT---------EEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred EECCCCeEEEEeCcCCCccc---------ceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence 99999999999998632110 011224458999999999999998679999999999999998653
No 65
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=271.96 Aligned_cols=264 Identities=17% Similarity=0.292 Sum_probs=202.7
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccc---cCCCCCceeeeCCC------------CCeeEEEecC
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQ---QDDCDPDLRLKGHD------------KEGYGLSWSP 176 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~~~~~h~------------~~v~~l~~~~ 176 (406)
+.|.+.|++++|+|++ .+||+|+.||.|+||++....... .........+.+|. ..|.+++|+|
T Consensus 25 ~~~~~~V~~v~~s~~g-~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 25 VAEADIISTVEFNHSG-ELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp CCGGGSEEEEEECSSS-SEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred ccccCcEEEEEECCCC-CEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence 3567999999999998 689999999999999998743110 01122366788998 8899999999
Q ss_pred CCC-CeEEEecCCCeEEEEeCCCccCCce---------------------e------------eeeee-eeccCccEEEE
Q 015484 177 FKE-GYLVSGSHDNKICLWDVSALAQDKV---------------------I------------DAMHV-YEAHESVVEDV 221 (406)
Q Consensus 177 ~~~-~~l~s~~~dg~i~iwd~~~~~~~~~---------------------~------------~~~~~-~~~~~~~i~~i 221 (406)
++. ..|++++.||+|++||+........ + .+... ..+|...|.++
T Consensus 104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 872 3899999999999999876332100 0 01112 35789999999
Q ss_pred EeeCCCCCEEEEEecCCcEEEEECCC-Ccccc-------cccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC
Q 015484 222 SWHLKNENLFGSAGDDCQLMIWDLRT-NQTQQ-------RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV 293 (406)
Q Consensus 222 ~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~-------~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 293 (406)
+|+| ++.+|++| .||.|++||++. ++... .+..|...|++++|+|++..+|++|+.||.|++||+++...
T Consensus 184 ~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 261 (447)
T 3dw8_B 184 SINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL 261 (447)
T ss_dssp EECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS
T ss_pred EEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc
Confidence 9999 68888888 799999999984 33333 35688999999999999834999999999999999998653
Q ss_pred ---CcEEecCCCC------------CeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCC
Q 015484 294 ---PLHILSSHTE------------EVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH 358 (406)
Q Consensus 294 ---~~~~~~~h~~------------~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h 358 (406)
.+..+..|.. .|.+++|+|+++ +|++++. +.|++||++.... ++..+.+|
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~-~~v~iwd~~~~~~-------------~~~~~~~~ 326 (447)
T 3dw8_B 262 CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRDY-LSVKVWDLNMENR-------------PVETYQVH 326 (447)
T ss_dssp SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEEES-SEEEEEETTCCSS-------------CSCCEESC
T ss_pred ccceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEeeC-CeEEEEeCCCCcc-------------ccceeecc
Confidence 2577888876 899999999997 6888888 9999999986222 22233445
Q ss_pred CCC---------------eeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 359 KAK---------------ISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 359 ~~~---------------v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
... +..++|+|+++ .|++++.||.|++||+.++..
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~-~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDS-VVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSS-EEEEECSTTEEEEEETTTCCE
T ss_pred ccccccccccccccccccceEEEECCCCC-EEEEeccCCEEEEEEcCCCcc
Confidence 321 33499999999 589999999999999988753
No 66
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.9e-34 Score=266.30 Aligned_cols=258 Identities=17% Similarity=0.301 Sum_probs=210.9
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecC-CCCCeEEEecCCCeEEEE
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSP-FKEGYLVSGSHDNKICLW 194 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~l~s~~~dg~i~iw 194 (406)
.....++++|+...++++++.+|.|+||++...... ......+.+|...|++++|+| ++. +|++|+.||+|++|
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~----~~~~~~~~~h~~~V~~~~~~p~~~~-~l~s~s~dg~v~vw 109 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV----DKNVPLVCGHTAPVLDIAWCPHNDN-VIASGSEDCTVMVW 109 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC----CTTCCCBCCCSSCEEEEEECTTCTT-EEEEEETTSEEEEE
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC----CCCCceEecCCCCEEEEEeCCCCCC-EEEEEeCCCeEEEE
Confidence 455668899987666677899999999999764221 133556789999999999999 666 99999999999999
Q ss_pred eCCCccCCcee-eeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc--cccCCCeeEEEecCCCC
Q 015484 195 DVSALAQDKVI-DAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV--KAHEKEVNYLSFNPYNE 271 (406)
Q Consensus 195 d~~~~~~~~~~-~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~i~~~~~~~ 271 (406)
|+.++...... .++..+.+|...|.+++|+|++..+|++++.||.|++||+++++.+..+ ..|...|.+++|+|++.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 189 (402)
T 2aq5_A 110 EIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA 189 (402)
T ss_dssp ECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSS
T ss_pred EccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCC
Confidence 99886432111 3446677899999999999965689999999999999999999988888 78999999999999998
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCcEEe-cCCCCC-eEEEEEcCCCCCEEEEE---eCCCcEEEEeCCCCCcccccccccC
Q 015484 272 WVLATASSDTTVALFDMRKMTVPLHIL-SSHTEE-VFQVEWDPNHETVLASS---ADDRRLMVWDLNRIGDEQLELDAED 346 (406)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~h~~~-v~~i~~~p~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~ 346 (406)
+|++++.||.|++||+++... +..+ ..|.+. +.++.|+|++. +|++| +.|+.|++||++.....
T Consensus 190 -~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~~-------- 258 (402)
T 2aq5_A 190 -LICTSCRDKRVRVIEPRKGTV-VAEKDRPHEGTRPVHAVFVSEGK-ILTTGFSRMSERQVALWDTKHLEEP-------- 258 (402)
T ss_dssp -CEEEEETTSEEEEEETTTTEE-EEEEECSSCSSSCCEEEECSTTE-EEEEEECTTCCEEEEEEETTBCSSC--------
T ss_pred -EEEEEecCCcEEEEeCCCCce-eeeeccCCCCCcceEEEEcCCCc-EEEEeccCCCCceEEEEcCccccCC--------
Confidence 899999999999999998664 6666 678776 89999999986 68888 78999999999873321
Q ss_pred CCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 347 GPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 347 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
.......|...|.+++|+|++++++++++.||.|++|++.++.
T Consensus 259 ----~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 259 ----LSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp ----SEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred ----ceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 1122234677899999999999655677789999999998875
No 67
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-33 Score=260.70 Aligned_cols=258 Identities=16% Similarity=0.256 Sum_probs=209.9
Q ss_pred eEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeC----CCccccccCCCCCceeee----------CCCCCeeE
Q 015484 106 VEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDC----AKQAEKQQDDCDPDLRLK----------GHDKEGYG 171 (406)
Q Consensus 106 ~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~----~~~~~~~~~~~~~~~~~~----------~h~~~v~~ 171 (406)
.+......|.+.|++++|+|+++.+||+|+.||.|++|++ .+..... .......+. +|...|++
T Consensus 36 ~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (425)
T 1r5m_A 36 VKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYW--KLTIIAELRHPFALSASSGKTTNQVTC 113 (425)
T ss_dssp CEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CE--EEEEEEEEECCCCCC------CBCEEE
T ss_pred hhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccc--cccccccccccccccccccCCCCceEE
Confidence 4555667788999999999999548999999999999999 6533100 000122222 36889999
Q ss_pred EEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccc
Q 015484 172 LSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ 251 (406)
Q Consensus 172 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~ 251 (406)
++|+|++. +|++|+.||.|++||... . .+..+..|...|.+++|+| ++.+|++++.||.|++||+++++.+
T Consensus 114 ~~~s~~~~-~l~~~~~dg~i~i~~~~~-~------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~ 184 (425)
T 1r5m_A 114 LAWSHDGN-SIVTGVENGELRLWNKTG-A------LLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVM 184 (425)
T ss_dssp EEECTTSS-EEEEEETTSCEEEEETTS-C------EEEEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEE
T ss_pred EEEcCCCC-EEEEEeCCCeEEEEeCCC-C------eeeeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEE
Confidence 99999988 999999999999999332 1 2355677899999999999 6788889999999999999765432
Q ss_pred c--------------------------------------------------------cccccCCCeeEEEecCCCCcEEE
Q 015484 252 Q--------------------------------------------------------RVKAHEKEVNYLSFNPYNEWVLA 275 (406)
Q Consensus 252 ~--------------------------------------------------------~~~~~~~~v~~i~~~~~~~~~l~ 275 (406)
. .+..|...|.+++|+|++. +|+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~ 263 (425)
T 1r5m_A 185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK-LLL 263 (425)
T ss_dssp EEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT-EEE
T ss_pred EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC-EEE
Confidence 2 2335678899999999998 999
Q ss_pred EEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEe
Q 015484 276 TASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH 355 (406)
Q Consensus 276 ~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 355 (406)
+++.||.|++||++.... +..+..|...|.+++|+|++ ++++++.||.|++||+.. ...+..+
T Consensus 264 ~~~~d~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~--------------~~~~~~~ 326 (425)
T 1r5m_A 264 SASDDGTLRIWHGGNGNS-QNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQ--------------NTLLALS 326 (425)
T ss_dssp EEETTSCEEEECSSSBSC-SEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTT--------------TEEEEEE
T ss_pred EEcCCCEEEEEECCCCcc-ceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCC--------------CcEeEec
Confidence 999999999999998654 78888899999999999998 699999999999999976 4666777
Q ss_pred cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 356 GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 356 ~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
..|...|.+++|+|+++ +|++++.||.|++|++.++.
T Consensus 327 ~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 327 IVDGVPIFAGRISQDGQ-KYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp ECTTCCEEEEEECTTSS-EEEEEETTSCEEEEECHHHH
T ss_pred ccCCccEEEEEEcCCCC-EEEEEECCCeEEEEECCCCc
Confidence 78999999999999999 78999999999999998664
No 68
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=8.7e-34 Score=286.35 Aligned_cols=250 Identities=20% Similarity=0.321 Sum_probs=217.9
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
...+|.+.|++++|+|++ .+||+|+.+|.|+|||+.+. .....+.+|...|.+++|+|++. +|++|+.||
T Consensus 8 ~~~~h~~~v~~i~~sp~~-~~la~~~~~g~v~iwd~~~~--------~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg 77 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTE-PWVLTTLYSGRVEIWNYETQ--------VEVRSIQVTETPVRAGKFIARKN-WIIVGSDDF 77 (814)
T ss_dssp EEEEECSCEEEEEECSSS-SEEEEEETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEEEGGGT-EEEEEETTS
T ss_pred eeecCCCceEEEEECCCC-CEEEEEeCCCEEEEEECCCC--------ceEEEEecCCCcEEEEEEeCCCC-EEEEEeCCC
Confidence 345799999999999999 68999999999999999873 33677889999999999999998 999999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC-cccccccccCCCeeEEEecC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN-QTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~ 268 (406)
.|++||+.++.. +..+..|...|.+++|+| ++.++++++.||.|++||++++ .....+..|...|.+++|+|
T Consensus 78 ~i~vw~~~~~~~------~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p 150 (814)
T 3mkq_A 78 RIRVFNYNTGEK------VVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP 150 (814)
T ss_dssp EEEEEETTTCCE------EEEEECCSSCEEEEEECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEET
T ss_pred eEEEEECCCCcE------EEEEecCCCCEEEEEEeC-CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEc
Confidence 999999987642 355677999999999999 6788999999999999999987 55667788999999999999
Q ss_pred -CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcC--CCCCEEEEEeCCCcEEEEeCCCCCccccccccc
Q 015484 269 -YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDP--NHETVLASSADDRRLMVWDLNRIGDEQLELDAE 345 (406)
Q Consensus 269 -~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 345 (406)
++. .|++++.||.|++||++...........+...+..++|+| +++ +|++++.||.|++||+..
T Consensus 151 ~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~----------- 217 (814)
T 3mkq_A 151 KDPS-TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQT----------- 217 (814)
T ss_dssp TEEE-EEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCC-EEEEECTTSEEEEEETTT-----------
T ss_pred CCCC-EEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCC-EEEEEeCCCEEEEEECCC-----------
Confidence 565 9999999999999999886664444444558999999999 776 699999999999999976
Q ss_pred CCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 346 DGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 346 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
...+..+.+|...|.+++|+|+++ ++++++.||.|++|++.++.
T Consensus 218 ---~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~ 261 (814)
T 3mkq_A 218 ---KSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYK 261 (814)
T ss_dssp ---TEEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCS
T ss_pred ---CcEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCc
Confidence 356677788999999999999999 79999999999999998764
No 69
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.5e-33 Score=253.17 Aligned_cols=215 Identities=23% Similarity=0.377 Sum_probs=189.1
Q ss_pred ceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC
Q 015484 159 DLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC 238 (406)
Q Consensus 159 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg 238 (406)
..++.+|.+.|.+++|+|++..+|++|+.|++|++|++..... ..-.++..+.+|...|.+++|+| ++.+|++++.|+
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~-~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~ 87 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ-KFGVPVRSFKGHSHIVQDCTLTA-DGAYALSASWDK 87 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT-EEEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTS
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCc-cccccceEEeCCcccEEEEEECC-CCCEEEEEeCCC
Confidence 5578899999999999997755999999999999999875432 12234567889999999999999 789999999999
Q ss_pred cEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCC---
Q 015484 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHE--- 315 (406)
Q Consensus 239 ~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~--- 315 (406)
.|++||+++++.+..+.+|...|.+++|+|++. +|++|+.|+.|++||++. ..+..+.+|...|.++.|+|...
T Consensus 88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~ 164 (319)
T 3frx_A 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADD 164 (319)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTS--CEEEEECCCSSCEEEEEECCC-----
T ss_pred EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCC--CeEEEEeccCCcEEEEEEccCCCCCC
Confidence 999999999999999999999999999999998 999999999999999974 34778889999999999999642
Q ss_pred --CEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 316 --TVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 316 --~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
.+|++++.|+.|++||++. ......+.+|...|.+++|+|+++ +|++++.||.|+|||+.++.
T Consensus 165 ~~~~l~s~~~d~~i~~wd~~~--------------~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~i~iwd~~~~~ 229 (319)
T 3frx_A 165 DSVTIISAGNDKMVKAWNLNQ--------------FQIEADFIGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAKK 229 (319)
T ss_dssp -CCEEEEEETTSCEEEEETTT--------------TEEEEEECCCCSCEEEEEECTTSS-EEEEEETTCEEEEEETTTTE
T ss_pred CccEEEEEeCCCEEEEEECCc--------------chhheeecCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCc
Confidence 3699999999999999986 456677789999999999999999 79999999999999998764
No 70
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.5e-35 Score=290.06 Aligned_cols=258 Identities=21% Similarity=0.303 Sum_probs=213.0
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC--CCCeEEEecCC
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF--KEGYLVSGSHD 188 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~d 188 (406)
..+|.+.|++++|+|++ .+|++|+.||.|+||++... .......+.+|...|++++|+++ +. +|++|+.|
T Consensus 5 l~gH~~~V~~l~~s~dg-~~latg~~dg~I~vwd~~~~------~~~~~~~l~~h~~~V~~l~~s~~~~~~-~l~s~s~D 76 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGE------THKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYD 76 (753)
T ss_dssp ---CCCCEEEECCCSSS-CCEEEEETTTEEEEEEEETT------EEEEEEEECCCSSCEEEEEECCTTSCS-EEEEEETT
T ss_pred cccCcceeEEEEECCCC-CeEEEEECCCcEEEEecCCC------CCccceeccCCcCceEEEEecCCCCCC-EEEEEeCC
Confidence 45799999999999998 57999999999999999752 23346778899999999999987 66 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCC-CCEEEEEecCCcEEEEECCCCcc--cccccccCCCeeEEE
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKN-ENLFGSAGDDCQLMIWDLRTNQT--QQRVKAHEKEVNYLS 265 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~i~ 265 (406)
|.|++||+.++. ......+..|...|.+++|+|.. +.++++|+.||.|++||++++.. ...+..|...|.+++
T Consensus 77 g~I~vwd~~~~~----~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~ 152 (753)
T 3jro_A 77 GKVLIWKEENGR----WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 152 (753)
T ss_dssp SCEEEEEEETTE----EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEE
T ss_pred CeEEEEECCCCc----ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEE
Confidence 999999998753 22345667799999999999942 88999999999999999998743 344577899999999
Q ss_pred ecCC-------------CCcEEEEEeCCCcEEEEeCCCCCC---CcEEecCCCCCeEEEEEcCC---CCCEEEEEeCCCc
Q 015484 266 FNPY-------------NEWVLATASSDTTVALFDMRKMTV---PLHILSSHTEEVFQVEWDPN---HETVLASSADDRR 326 (406)
Q Consensus 266 ~~~~-------------~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~h~~~v~~i~~~p~---~~~~l~s~~~dg~ 326 (406)
|+|. +. ++++|+.||.|++||++.... +...+.+|...|++++|+|+ +. +|++++.||.
T Consensus 153 ~~p~~~~~~~~~~~~~d~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~-~l~s~s~Dg~ 230 (753)
T 3jro_A 153 WAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRT 230 (753)
T ss_dssp ECCCC---------CGGGC-CEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEESSSC
T ss_pred ecCcccccccccccCCCCC-EEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC-EEEEEecCCE
Confidence 9994 66 899999999999999987642 35667889999999999999 65 7999999999
Q ss_pred EEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 327 LMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 327 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
|++||+........ .......+|...|++++|+|+++ ++++++.||.|++|++..+
T Consensus 231 I~iwd~~~~~~~~~---------~~~~~~~~~~~~v~~l~~spdg~-~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 231 CIIWTQDNEQGPWK---------KTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp EEEEEESSSSSCCB---------CCBSSSSCCSSCCCCEEECTTTC-CEEEECSSSCEECCBCCSS
T ss_pred EEEecCCCCCCcce---------eEEeccCCCCCceEEEEEcCCCC-EEEEEcCCCEEEEEecCCC
Confidence 99999987432111 12222345888999999999999 5889999999999999853
No 71
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.3e-34 Score=267.25 Aligned_cols=244 Identities=16% Similarity=0.166 Sum_probs=199.3
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
..+....|+|++ .+||+|+.||.|++||+... .....+.+|...|.+++|+|++. +|++|+.||.|++||
T Consensus 98 ~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd 167 (420)
T 3vl1_A 98 DYTAVDTAKLQM-RRFILGTTEGDIKVLDSNFN--------LQREIDQAHVSEITKLKFFPSGE-ALISSSQDMQLKIWS 167 (420)
T ss_dssp CEEEEEEECSSS-CEEEEEETTSCEEEECTTSC--------EEEEETTSSSSCEEEEEECTTSS-EEEEEETTSEEEEEE
T ss_pred CceEEEEEecCC-CEEEEEECCCCEEEEeCCCc--------ceeeecccccCccEEEEECCCCC-EEEEEeCCCeEEEEe
Confidence 344455678888 68999999999999999863 22455678999999999999988 999999999999999
Q ss_pred CCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccc---cC--------------
Q 015484 196 VSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA---HE-------------- 258 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~-------------- 258 (406)
+.+++. +..+.+|...|.+++|+| ++.+|++++.||.|++||+++++.+..+.. +.
T Consensus 168 ~~~~~~------~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 240 (420)
T 3vl1_A 168 VKDGSN------PRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDR 240 (420)
T ss_dssp TTTCCC------CEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCS
T ss_pred CCCCcC------ceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcc
Confidence 988653 355678999999999999 688999999999999999999888776643 33
Q ss_pred -------CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 015484 259 -------KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWD 331 (406)
Q Consensus 259 -------~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd 331 (406)
..+.+++|+|++. +|++|+.||.|++||+++..........|...|.+++|+|+++.+|++++.||.|++||
T Consensus 241 ~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd 319 (420)
T 3vl1_A 241 QLHEISTSKKNNLEFGTYGK-YVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWD 319 (420)
T ss_dssp SCGGGCCCCCCTTCSSCTTE-EEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred eeeecccCcccceEEcCCCC-EEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEE
Confidence 4455556678888 89999999999999999877645555668899999999999976799999999999999
Q ss_pred CCCCCcccccccccCCCCeeEEEecC-CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 332 LNRIGDEQLELDAEDGPPELLFSHGG-HKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
++.... ++..+.+ |...|..+.|. ++. +|++++.|+.|++|++.+.
T Consensus 320 ~~~~~~-------------~~~~~~~~~~~~v~~~~~~-~~~-~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 320 LRSPEC-------------PVGEFLINEGTPINNVYFA-AGA-LFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp TTCTTS-------------CSEEEEESTTSCEEEEEEE-TTE-EEEEETTTEEEEEEEECCT
T ss_pred cCCCcC-------------chhhhhccCCCCceEEEeC-CCC-EEEEecCCccEEEEeccCC
Confidence 987322 1222333 66778888665 666 7999999999999998874
No 72
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-34 Score=271.11 Aligned_cols=272 Identities=12% Similarity=0.195 Sum_probs=203.1
Q ss_pred eecCCceeEEEEcC-CCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 112 IRVDGEVNRARCMP-QKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 112 ~~h~~~v~~i~~~p-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
.+|.+.|++++|+| ++ .+||+|+.||+|+|||+....... ...+...+ +|...|.+++|+|++. +|++|+.||+
T Consensus 60 ~~h~~~V~~~~~s~~~~-~~l~s~s~dg~v~vwd~~~~~~~~--~~~~~~~~-~h~~~v~~~~~~~~~~-~l~s~s~dg~ 134 (437)
T 3gre_A 60 ENEPNSITSSAVSPGET-PYLITGSDQGVIKIWNLKEIIVGE--VYSSSLTY-DCSSTVTQITMIPNFD-AFAVSSKDGQ 134 (437)
T ss_dssp TTTTSCEEEEEEECSSS-CEEEEEETTSEEEEEEHHHHHTTC--CCSCSEEE-ECSSCEEEEEECTTSS-EEEEEETTSE
T ss_pred cCCCCceEEEEECCCCC-CEEEEecCCceEEEeECcccccCc--ccceeeec-cCCCCEEEEEEeCCCC-EEEEEeCCCE
Confidence 46889999999999 77 689999999999999987622110 12223333 5999999999999888 9999999999
Q ss_pred EEEEeCC---CccCCcee--eeeeeee--c--cCccEEEEE--eeCCCCCEEEEEecCCcEEEEECCCCcccccccc--c
Q 015484 191 ICLWDVS---ALAQDKVI--DAMHVYE--A--HESVVEDVS--WHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA--H 257 (406)
Q Consensus 191 i~iwd~~---~~~~~~~~--~~~~~~~--~--~~~~i~~i~--~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~ 257 (406)
|++||+. .+...... ..+..+. . +...+.++. +++ ++.++++++.||.|++||+++++.+..+.. |
T Consensus 135 i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h 213 (437)
T 3gre_A 135 IIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTLERLQIIENSPR 213 (437)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTCCEEEEEECCGG
T ss_pred EEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCC
Confidence 9999996 32211111 0111111 1 445666666 445 678999999999999999999999888877 8
Q ss_pred CCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec-CCCCCeEEEEEcC----CCCCEEEEEeCCCcEEEEeC
Q 015484 258 EKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILS-SHTEEVFQVEWDP----NHETVLASSADDRRLMVWDL 332 (406)
Q Consensus 258 ~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~i~~~p----~~~~~l~s~~~dg~i~iwd~ 332 (406)
...|++++|+|++. +|++|+.||.|++||++.... +..+. .|...|.+++|+| ++. +|++++.||.|++||+
T Consensus 214 ~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~ 290 (437)
T 3gre_A 214 HGAVSSICIDEECC-VLILGTTRGIIDIWDIRFNVL-IRSWSFGDHAPITHVEVCQFYGKNSV-IVVGGSSKTFLTIWNF 290 (437)
T ss_dssp GCCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEE-EEEEBCTTCEEEEEEEECTTTCTTEE-EEEEESTTEEEEEEET
T ss_pred CCceEEEEECCCCC-EEEEEcCCCeEEEEEcCCccE-EEEEecCCCCceEEEEeccccCCCcc-EEEEEcCCCcEEEEEc
Confidence 89999999999988 999999999999999998543 66664 7888999997765 454 7999999999999999
Q ss_pred CCCCcccccccccCCCCeeEE----------EecC--CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 333 NRIGDEQLELDAEDGPPELLF----------SHGG--HKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~----------~~~~--h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
+..............+....+ .+.+ |...|++++|+ +++ +|++++.|+.|++||+.++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~-~l~s~~~d~~i~~wd~~~~~~ 362 (437)
T 3gre_A 291 VKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK-ILLTDEATSSIVMFSLNELSS 362 (437)
T ss_dssp TTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE-EEEEEGGGTEEEEEETTCGGG
T ss_pred CCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce-EEEecCCCCeEEEEECCCccc
Confidence 874322211111100000000 1223 77889999999 666 799999999999999998754
No 73
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=5.8e-34 Score=264.29 Aligned_cols=260 Identities=18% Similarity=0.297 Sum_probs=210.9
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeE
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKI 191 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 191 (406)
.+|.+.|++++|+|.+..+|++|+.||.|+||++....... ....+...+.+|...|.+++|+|++..+|++|+.||.|
T Consensus 78 ~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i 156 (402)
T 2aq5_A 78 CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL-PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI 156 (402)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS-CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCE
T ss_pred ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc-ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEE
Confidence 47999999999999433799999999999999998742211 01155788999999999999999985599999999999
Q ss_pred EEEeCCCccCCceeeeeeee--eccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-cccCCC-eeEEEec
Q 015484 192 CLWDVSALAQDKVIDAMHVY--EAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKE-VNYLSFN 267 (406)
Q Consensus 192 ~iwd~~~~~~~~~~~~~~~~--~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~-v~~i~~~ 267 (406)
++||+.++.. ...+ ..|...|.+++|+| ++.+|++++.||.|++||+++++.+..+ ..|... +.++.|+
T Consensus 157 ~iwd~~~~~~------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (402)
T 2aq5_A 157 LVWDVGTGAA------VLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFV 229 (402)
T ss_dssp EEEETTTTEE------EEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEEC
T ss_pred EEEECCCCCc------cEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEc
Confidence 9999987632 3445 57899999999999 7888999999999999999999888887 677665 8999999
Q ss_pred CCCCcEEEEE---eCCCcEEEEeCCCCCCCcEEec-CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccccc
Q 015484 268 PYNEWVLATA---SSDTTVALFDMRKMTVPLHILS-SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELD 343 (406)
Q Consensus 268 ~~~~~~l~~~---~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 343 (406)
|++. +|++| +.|+.|++||+++...++.... .|...+.+++|+|+++.++++++.||.|++||+......
T Consensus 230 ~~~~-~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~----- 303 (402)
T 2aq5_A 230 SEGK-ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPF----- 303 (402)
T ss_dssp STTE-EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTC-----
T ss_pred CCCc-EEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcc-----
Confidence 9988 88888 7899999999998776555544 577889999999999865556778999999999863210
Q ss_pred ccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 344 AEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 344 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
...+..+. |...|.+++|+|++.+ +++ .++.+++|++.++..
T Consensus 304 -----~~~l~~~~-~~~~v~~~~~sp~~~~-~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 304 -----LHYLSMFS-SKESQRGMGYMPKRGL-EVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp -----EEEEEEEC-CSSCCSEEEECCGGGS-CGG--GTEEEEEEEEETTEE
T ss_pred -----eEeecccc-cCCcccceEEeccccc-cee--cceeEEEEEcCCCcE
Confidence 12233333 6689999999999984 543 577999999987643
No 74
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.3e-33 Score=248.33 Aligned_cols=217 Identities=20% Similarity=0.347 Sum_probs=181.9
Q ss_pred eeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCC-CCCEEEEEecCC
Q 015484 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLK-NENLFGSAGDDC 238 (406)
Q Consensus 160 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~-~~~~l~~~~~dg 238 (406)
..+.+|...|.+++|+|+++ +|++|+.|++|++||+..... ..+..+.+|..+|.+++|+|. .+.+|++|+.||
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~----~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~ 77 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETH----KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 77 (297)
T ss_dssp EECCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCB----CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTT
T ss_pred eeccCCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCc----EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCC
Confidence 45778999999999999998 999999999999999975321 234667899999999999863 478999999999
Q ss_pred cEEEEECCCCc--ccccccccCCCeeEEEecCC--CCcEEEEEeCCCcEEEEeCCCCCC-CcEEecCCCCCeEEEEEcCC
Q 015484 239 QLMIWDLRTNQ--TQQRVKAHEKEVNYLSFNPY--NEWVLATASSDTTVALFDMRKMTV-PLHILSSHTEEVFQVEWDPN 313 (406)
Q Consensus 239 ~i~i~d~~~~~--~~~~~~~~~~~v~~i~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~i~~~p~ 313 (406)
.|++||+++++ .+..+..|...|.+++|+|+ +. +|++++.|+.|++||++.... ....+.+|...|.+++|+|+
T Consensus 78 ~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~ 156 (297)
T 2pm7_B 78 KVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 156 (297)
T ss_dssp EEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCC
T ss_pred EEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCC
Confidence 99999999874 45556778999999999997 66 999999999999999987532 24667899999999999997
Q ss_pred C------------CCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCC--CcEEEEEe
Q 015484 314 H------------ETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKND--PWVISSVA 379 (406)
Q Consensus 314 ~------------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~--~~~l~s~~ 379 (406)
+ ..+|++|+.|+.|++||++.... ...+...+.+|...|.+++|+|++ ..+|++++
T Consensus 157 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~----------~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s 226 (297)
T 2pm7_B 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ----------TYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS 226 (297)
T ss_dssp C------------CCEEEEEETTSCEEEEEEETTTT----------EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred cccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc----------eEEEEEEecCCCCceEEEEECCCCCCceEEEEEE
Confidence 3 23799999999999999876221 113556778999999999999985 23799999
Q ss_pred CCCcEEEEeCCCc
Q 015484 380 DDNTVQVWQMTDS 392 (406)
Q Consensus 380 ~dg~i~iw~~~~~ 392 (406)
.|+.|+||++.+.
T Consensus 227 ~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 227 QDRTCIIWTQDNE 239 (297)
T ss_dssp TTSCEEEEEESST
T ss_pred CCCcEEEEEeCCC
Confidence 9999999998764
No 75
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-33 Score=247.36 Aligned_cols=245 Identities=18% Similarity=0.198 Sum_probs=208.5
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
....+|.+.|++++| |++ .+|++|+.||.|++||+... .....+..|...|.+++|+|++. +|++|+.|
T Consensus 12 ~~l~~h~~~v~~~~~-~~~-~~l~s~~~dg~v~vw~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d 80 (313)
T 3odt_A 12 ATLKGHDQDVRDVVA-VDD-SKVASVSRDGTVRLWSKDDQ--------WLGTVVYTGQGFLNSVCYDSEKE-LLLFGGKD 80 (313)
T ss_dssp EEECCCSSCEEEEEE-EET-TEEEEEETTSEEEEEEESSS--------EEEEEEEECSSCEEEEEEETTTT-EEEEEETT
T ss_pred HHhhCCCCCcEEEEe-cCC-CEEEEEEcCCcEEEEECCCC--------EEEEEeecCCccEEEEEECCCCC-EEEEecCC
Confidence 334579999999999 877 57999999999999999763 33566778999999999999988 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
|.|++|++....... ....+..|...|.+++|+ +.++++++.||.|++|| .++....+..|...+.+++|.|
T Consensus 81 g~i~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~ 152 (313)
T 3odt_A 81 TMINGVPLFATSGED---PLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVS 152 (313)
T ss_dssp SCEEEEETTCCTTSC---C-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEE
T ss_pred CeEEEEEeeecCCCC---cccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEcc
Confidence 999999998764332 335567899999999994 56899999999999999 5666777788999999999998
Q ss_pred -CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC-CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC
Q 015484 269 -YNEWVLATASSDTTVALFDMRKMTVPLHILSS-HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED 346 (406)
Q Consensus 269 -~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 346 (406)
++. ++++++.||.|++||.. .....+.. |...|.+++|+|++. +++++.||.|++||++.
T Consensus 153 ~~~~-~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~------------ 214 (313)
T 3odt_A 153 FSEN-KFLTASADKTIKLWQND---KVIKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHT------------ 214 (313)
T ss_dssp TTTT-EEEEEETTSCEEEEETT---EEEEEECSSCSSCEEEEEEEETTE--EEEEETTSEEEEEETTT------------
T ss_pred CCCC-EEEEEECCCCEEEEecC---ceEEEEeccCcccEEEEEEcCCCe--EEEccCCCeEEEEECCc------------
Confidence 565 99999999999999943 23556666 899999999999985 88999999999999986
Q ss_pred CCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 347 GPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 347 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
...+..+.+|...|.+++|+|++. +++++.||.|++||+.++..
T Consensus 215 --~~~~~~~~~~~~~i~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~ 258 (313)
T 3odt_A 215 --GDVLRTYEGHESFVYCIKLLPNGD--IVSCGEDRTVRIWSKENGSL 258 (313)
T ss_dssp --CCEEEEEECCSSCEEEEEECTTSC--EEEEETTSEEEEECTTTCCE
T ss_pred --hhhhhhhhcCCceEEEEEEecCCC--EEEEecCCEEEEEECCCCce
Confidence 356677788999999999999994 77889999999999988753
No 76
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.3e-33 Score=254.05 Aligned_cols=253 Identities=14% Similarity=0.120 Sum_probs=206.4
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
+|.+.|++++|+|++ .+|++++.||.|+||++..... ..+...+.+|...|.+++|+|++..+|++|+.||.|+
T Consensus 9 ~h~~~v~~~~~s~~~-~~l~~~~~d~~v~iw~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 9 APKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAK-----NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp CCSSCEEEEEEEGGG-TEEEEEETTSEEEEEEEETTTT-----EEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred CCCCcEEEEEEcCCC-CEEEEEcCCCeEEEEEeCCCCc-----cccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 699999999999998 6899999999999999987421 1123456689999999999997432799999999999
Q ss_pred EEeC-CCccCCceeeeeeeeec--cCccEEEEEeeCCCCCEEEEEecCCcEEEEECCC---------CcccccccccCCC
Q 015484 193 LWDV-SALAQDKVIDAMHVYEA--HESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT---------NQTQQRVKAHEKE 260 (406)
Q Consensus 193 iwd~-~~~~~~~~~~~~~~~~~--~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~ 260 (406)
+||+ ..+.. ..+.. |...|.+++|+| +.++++++.||.|++||+++ ++.+..+. +...
T Consensus 83 ~wd~~~~~~~-------~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~ 152 (342)
T 1yfq_A 83 KVDLIGSPSF-------QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNK 152 (342)
T ss_dssp EECSSSSSSE-------EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCC
T ss_pred EEEeccCCce-------EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCc
Confidence 9999 76532 44566 899999999998 78899999999999999998 77777776 8899
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCC-CCCC-cEEecCCCCCeEEEEEcC-CCCCEEEEEeCCCcEEEEeCCCCCc
Q 015484 261 VNYLSFNPYNEWVLATASSDTTVALFDMRK-MTVP-LHILSSHTEEVFQVEWDP-NHETVLASSADDRRLMVWDLNRIGD 337 (406)
Q Consensus 261 v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~-~~~~~~h~~~v~~i~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~ 337 (406)
|.+++|+|++ +++++.|+.|++||++. ...+ ......|...|.+++|+| +++ ++++++.||.|++|++...+.
T Consensus 153 v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~ 228 (342)
T 1yfq_A 153 IFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE-GYACSSIDGRVAVEFFDDQGD 228 (342)
T ss_dssp EEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGC-EEEEEETTSEEEEEECCTTCC
T ss_pred eEEEEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCC-EEEEEecCCcEEEEEEcCCCc
Confidence 9999999875 88999999999999998 5543 344567888999999999 886 699999999999999987410
Q ss_pred ccccccccCCCCeeEEEecCC---------CCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 338 EQLELDAEDGPPELLFSHGGH---------KAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~h---------~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.. .......+.+| ...|.+++|+|+++ +|++++.||.|++||+.++..
T Consensus 229 ~~--------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~ 285 (342)
T 1yfq_A 229 DY--------NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAGSDGIISCWNLQTRKK 285 (342)
T ss_dssp ST--------TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-CEEEEETTSCEEEEETTTTEE
T ss_pred cc--------ccccceeeecccccccccccceeEEEEEEcCCCC-EEEEecCCceEEEEcCccHhH
Confidence 00 01223334445 44999999999999 588999999999999987743
No 77
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.7e-32 Score=255.66 Aligned_cols=262 Identities=12% Similarity=0.144 Sum_probs=207.3
Q ss_pred EEEEe-ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec
Q 015484 108 IAQKI-RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS 186 (406)
Q Consensus 108 ~~~~~-~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 186 (406)
....+ .|.+.|++++|+|++ .+|++|+.||.|++||+.+. .....+.+|...|.+++|+|++. +|++|+
T Consensus 131 ~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~--------~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~ 200 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDG--------SNPRTLIGHRATVTDIAIIDRGR-NVLSAS 200 (420)
T ss_dssp EEEETTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTC--------CCCEEEECCSSCEEEEEEETTTT-EEEEEE
T ss_pred eeeecccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCC--------cCceEEcCCCCcEEEEEEcCCCC-EEEEEc
Confidence 34443 799999999999998 68999999999999999873 44678899999999999999988 999999
Q ss_pred CCCeEEEEeCCCccCCceeeeeeeeecc---------------------CccEEEEEeeCCCCCEEEEEecCCcEEEEEC
Q 015484 187 HDNKICLWDVSALAQDKVIDAMHVYEAH---------------------ESVVEDVSWHLKNENLFGSAGDDCQLMIWDL 245 (406)
Q Consensus 187 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~---------------------~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~ 245 (406)
.||+|++||+.+++....+ .....+ ...+.+++|+| ++.++++++.||.|++||+
T Consensus 201 ~d~~v~iwd~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~ 276 (420)
T 3vl1_A 201 LDGTIRLWECGTGTTIHTF---NRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNV 276 (420)
T ss_dssp TTSCEEEEETTTTEEEEEE---CBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEET
T ss_pred CCCcEEEeECCCCceeEEe---ecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEEEEEC
Confidence 9999999999876432221 111112 34555666677 6789999999999999999
Q ss_pred CCCcccccc-cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC-CCCCeEEEEEcCCCCCEEEEEeC
Q 015484 246 RTNQTQQRV-KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS-HTEEVFQVEWDPNHETVLASSAD 323 (406)
Q Consensus 246 ~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-h~~~v~~i~~~p~~~~~l~s~~~ 323 (406)
++++....+ ..|...|.+++|+|++..+|++|+.||.|++||+++...++..+.. |...|.++.|. +++ +|++++.
T Consensus 277 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~s~~~ 354 (420)
T 3vl1_A 277 FSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA-AGA-LFVSSGF 354 (420)
T ss_dssp TTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE-TTE-EEEEETT
T ss_pred CCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC-CCC-EEEEecC
Confidence 998876666 4578899999999999878999999999999999998777777776 66778888665 554 7999999
Q ss_pred CCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCC---cEEEEEeCCCcEEEEeCCC
Q 015484 324 DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDP---WVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 324 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~---~~l~s~~~dg~i~iw~~~~ 391 (406)
||.|++|++............ .......+|...|.+++|+|+++ .+ ++++.+|.+.+|++++
T Consensus 355 d~~v~iw~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~~g~l-~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 355 DTSIKLDIISDPESERPAIEF-----ETPTFLVSNDDAVSQFCYVSDDESNGEV-LEVGKNNFCALYNLSN 419 (420)
T ss_dssp TEEEEEEEECCTTCCSCEECT-----TSCEEECCSSCCCCEEEEECCSSSSCEE-EEEETTTEEEEEESCC
T ss_pred CccEEEEeccCCCCCccceec-----cCccEEccCCcceEEEEEccCCCCcceE-EEEcCCceEEEEeccC
Confidence 999999999874332211110 11122457888999999999988 54 4556789999999875
No 78
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=6.9e-32 Score=241.73 Aligned_cols=247 Identities=19% Similarity=0.363 Sum_probs=204.6
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
...+|...|++++|+|++ .+||+|+.||+|+||++.+. +....+.+|...+.++.+. +. .+++|+.++
T Consensus 62 ~~~~~~~~V~~v~~~~~~-~~l~sgs~Dg~v~iw~~~~~--------~~~~~~~~h~~~~~~~~~~--~~-~l~s~~~~~ 129 (318)
T 4ggc_A 62 QMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQ--------KRLRNMTSHSARVGSLSWN--SY-ILSSGSRSG 129 (318)
T ss_dssp ECCSTTCCEEEEEECTTS-SEEEEEETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEEE--TT-EEEEEETTS
T ss_pred EecCCCCeEEEEEECCCC-CEEEEEECCCcEEEeecCCc--------eeEEEecCccceEEEeecC--CC-EEEEEecCC
Confidence 334688899999999999 68999999999999999884 3467788999988877665 45 899999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccc----ccccccCCCeeEEE
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ----QRVKAHEKEVNYLS 265 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~v~~i~ 265 (406)
.+++|+...... .+..+.+|...+..+.+++ .+.++++++.||.|++||+++++.. .....+...|.+++
T Consensus 130 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 203 (318)
T 4ggc_A 130 HIHHHDVRVAEH-----HVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 203 (318)
T ss_dssp EEEEEETTSSSC-----EEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEE
T ss_pred ceEeeecCCCce-----eEEEEcCccCceEEEEEcC-CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEE
Confidence 999999877532 2456678999999999998 6889999999999999999987653 23356778899999
Q ss_pred ecCCCCcEEE--EEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEE-EeCCCcEEEEeCCCCCcccccc
Q 015484 266 FNPYNEWVLA--TASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLAS-SADDRRLMVWDLNRIGDEQLEL 342 (406)
Q Consensus 266 ~~~~~~~~l~--~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~ 342 (406)
++|.+..++. +++.++.|++||.+... ......+...+..+.|+|.++.++++ ++.|+.|+|||+++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~i~lwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~-------- 273 (318)
T 4ggc_A 204 WCPWQSNVLATGGGTSDRHIRIWNVCSGA--CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT-------- 273 (318)
T ss_dssp ECTTSTTEEEEEECTTTCEEEEEETTTCC--EEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT--------
T ss_pred ecCCCCcEEEEEecCCCCEEEEEeccccc--ccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCC--------
Confidence 9998876654 55678899999998755 34445677889999999999864433 34799999999987
Q ss_pred cccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 343 DAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 343 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
.+++..+.+|.+.|++++|+|+++ +|+||+.||.|+|||+.+
T Consensus 274 ------~~~~~~l~gH~~~V~~l~~spdg~-~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 274 ------MAKVAELKGHTSRVLSLTMSPDGA-TVASAAADETLRLWRCFE 315 (318)
T ss_dssp ------CCEEEEECCCSSCEEEEEECTTSS-CEEEEETTTEEEEECCSC
T ss_pred ------CcEEEEEcCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEECCC
Confidence 467778899999999999999999 589999999999999865
No 79
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3e-33 Score=255.50 Aligned_cols=249 Identities=16% Similarity=0.220 Sum_probs=200.1
Q ss_pred EeecCCceeEEEEcCCC--CcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 111 KIRVDGEVNRARCMPQK--PNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
..+|.+.|++++|+|++ ..+|++|+.||.|+||++.... ......+.+|...|.+++|+|++. +|++|+.|
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d 107 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG------QTIPKAQQMHTGPVLDVCWSDDGS-KVFTASCD 107 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS------CEEEEEEEECSSCEEEEEECTTSS-EEEEEETT
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC------ceeEEEeccccCCEEEEEECcCCC-EEEEEcCC
Confidence 44799999999999984 4789999999999999998621 122367788999999999999888 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEe--eCCCCCEEEEEecCCcEEEEECCCCcccccccccC--------
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSW--HLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHE-------- 258 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~--~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------- 258 (406)
|.|++||+.++.. .....|...|.+++| +| ++.+|++++.||.|++||+++++.+..+..+.
T Consensus 108 g~v~iwd~~~~~~-------~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 179 (368)
T 3mmy_A 108 KTAKMWDLSSNQA-------IQIAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVI 179 (368)
T ss_dssp SEEEEEETTTTEE-------EEEEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEE
T ss_pred CcEEEEEcCCCCc-------eeeccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEec
Confidence 9999999987642 224568999999999 76 67889999999999999999887765554322
Q ss_pred ---------------------------------CCeeEEEecCCCC---cEEEEEeCCCcEEEEeCCCCC--CCcEEecC
Q 015484 259 ---------------------------------KEVNYLSFNPYNE---WVLATASSDTTVALFDMRKMT--VPLHILSS 300 (406)
Q Consensus 259 ---------------------------------~~v~~i~~~~~~~---~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~ 300 (406)
..+.++++.+... ..+++++.||.|++||++... ..+..+..
T Consensus 180 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 259 (368)
T 3mmy_A 180 YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKC 259 (368)
T ss_dssp TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEEC
T ss_pred CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeee
Confidence 2233444433322 138999999999999998763 23566777
Q ss_pred CCC------------CeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeC
Q 015484 301 HTE------------EVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWN 368 (406)
Q Consensus 301 h~~------------~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 368 (406)
|.. .|.+++|+|+++ +|++++.||.|++||+.. ..++..+.+|...|.+++|+
T Consensus 260 ~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~v~~~~~s 324 (368)
T 3mmy_A 260 HRSNGTNTSAPQDIYAVNGIAFHPVHG-TLATVGSDGRFSFWDKDA--------------RTKLKTSEQLDQPISACCFN 324 (368)
T ss_dssp SEEC----CCCEEECCEEEEEECTTTC-CEEEEETTSCEEEEETTT--------------TEEEEECCCCSSCEEEEEEC
T ss_pred eecccccccccccccceEEEEEecCCC-EEEEEccCCeEEEEECCC--------------CcEEEEecCCCCCceEEEEC
Confidence 765 799999999997 599999999999999986 46677888999999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCC
Q 015484 369 KNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 369 ~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
|+++ +|++++.|+..+.|++-
T Consensus 325 ~~g~-~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 325 HNGN-IFAYASSYDWSKGHEFY 345 (368)
T ss_dssp TTSS-CEEEEECCCSTTCGGGC
T ss_pred CCCC-eEEEEeccccccccccc
Confidence 9999 58888888765555543
No 80
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=4.9e-33 Score=257.07 Aligned_cols=233 Identities=9% Similarity=0.055 Sum_probs=166.8
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecC--------CCCCeEEEecCCCeEEEEeCCCcc
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSP--------FKEGYLVSGSHDNKICLWDVSALA 200 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--------~~~~~l~s~~~dg~i~iwd~~~~~ 200 (406)
.+||+++.|++|+|||........ ..+...+.+|.+.|++++|+| ++. +|++|+.|++|+|||+.++.
T Consensus 102 ~~las~~~d~~v~lw~~~~~~~~~---~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~-~las~s~D~tv~~Wd~~~~~ 177 (393)
T 4gq1_A 102 LFLACVCQDNTVRLIITKNETIIT---QHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ-VIASVGDDCTLIIWRLTDEG 177 (393)
T ss_dssp EEEEEEETTSCEEEEEEETTEEEE---EEEECTTTSCSSCEEEEEEEEEECTTCSEEEE-EEEEEETTSEEEEEEEETTE
T ss_pred CEEEEEeCCCcEEEEECCCCccce---eeeecccCCCCCceEEEEEccccccccCCCCC-EEEEEECCCeEEEEECCCCc
Confidence 579999999999999998743211 122345679999999999997 566 99999999999999997653
Q ss_pred CCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-------------------------c
Q 015484 201 QDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-------------------------K 255 (406)
Q Consensus 201 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------------------------~ 255 (406)
. ......|...+.+++|+|.+..+|++++.||.|++||+++++..... .
T Consensus 178 ~------~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 251 (393)
T 4gq1_A 178 P------ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS 251 (393)
T ss_dssp E------EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred e------eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence 2 34455788999999999976678999999999999999887543211 3
Q ss_pred ccCCCeeEEEec-CCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEE------------------EEcC-CCC
Q 015484 256 AHEKEVNYLSFN-PYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQV------------------EWDP-NHE 315 (406)
Q Consensus 256 ~~~~~v~~i~~~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i------------------~~~p-~~~ 315 (406)
+|...+.++.|. |++. .|++++.|+.+++||++.... ...+..|...+..+ .|+| .+.
T Consensus 252 ~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (393)
T 4gq1_A 252 GIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFANND-YNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMD 329 (393)
T ss_dssp CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCTT
T ss_pred cccccceeeeeecCCCC-EEEEEeCCCCEEEEECccCCC-CceEeeecCccccEEEccccccccccCcceeEEEccCCCC
Confidence 567788999986 6777 899999999999999987543 33333444333333 2333 344
Q ss_pred CEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 316 TVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 316 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
.++++|+.||.|+|||+... .......+|..+|.+++|+|+|+ +||+++.+| +.+|++
T Consensus 330 ~~~~sgs~Dg~V~lwd~~~~--------------~~~~~~~~~~~~V~svafspdG~-~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 330 YFATAHSQHGLIQLINTYEK--------------DSNSIPIQLGMPIVDFCWHQDGS-HLAIATEGS-VLLTRL 387 (393)
T ss_dssp EEEEEETTTTEEEEEETTCT--------------TCCEEEEECSSCEEEEEECTTSS-EEEEEESSE-EEEEEE
T ss_pred EEEEEECCCCEEEEEECCCC--------------cEEEEecCCCCcEEEEEEcCCCC-EEEEEeCCC-eEEEEE
Confidence 46778889999999999862 23334456788999999999999 688988665 666654
No 81
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=5.7e-32 Score=254.15 Aligned_cols=318 Identities=16% Similarity=0.229 Sum_probs=221.5
Q ss_pred CCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEE-EEeecC-
Q 015484 38 WPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIA-QKIRVD- 115 (406)
Q Consensus 38 ~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~- 115 (406)
-+..+++|.|+. ..++.|.. ++.|.|+++.-.. ... . ...+.++.. ...+|.
T Consensus 29 ~~V~~v~~s~~g------------~~la~g~~-----dg~v~iw~~~~~~---~~~--~----~~~~~~~~~~~~~~h~~ 82 (447)
T 3dw8_B 29 DIISTVEFNHSG------------ELLATGDK-----GGRVVIFQQEQEN---KIQ--S----HSRGEYNVYSTFQSHEP 82 (447)
T ss_dssp GSEEEEEECSSS------------SEEEEEET-----TSEEEEEEECC----------C----CCCCCEEEEEEEECCCC
T ss_pred CcEEEEEECCCC------------CEEEEEcC-----CCeEEEEEecCCC---CCC--c----ccccceeEecccccccc
Confidence 367899998732 25666655 3789999877331 000 0 011234333 344687
Q ss_pred -----------CceeEEEEcCCCC-cEEEEEeCCCeEEEEeCCCcccccc-----------------CCC----------
Q 015484 116 -----------GEVNRARCMPQKP-NLVGTKTSSCEVYVFDCAKQAEKQQ-----------------DDC---------- 156 (406)
Q Consensus 116 -----------~~v~~i~~~p~~~-~~l~~~~~dg~i~iw~~~~~~~~~~-----------------~~~---------- 156 (406)
+.|++++|+|++. .+|++++.||.|++|++........ ...
T Consensus 83 ~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 162 (447)
T 3dw8_B 83 EFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDL 162 (447)
T ss_dssp EEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEE
T ss_pred cccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchhe
Confidence 8899999999863 4789999999999999876332100 000
Q ss_pred ----CCcee-eeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeee----eeeeccCccEEEEEeeCCC
Q 015484 157 ----DPDLR-LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAM----HVYEAHESVVEDVSWHLKN 227 (406)
Q Consensus 157 ----~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~i~~i~~~p~~ 227 (406)
.+... ..+|...|.+++|+|++. +|++| .||.|++||+..... .+..+ ..+..|...|.+++|+|++
T Consensus 163 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 238 (447)
T 3dw8_B 163 MVEASPRRIFANAHTYHINSISINSDYE-TYLSA-DDLRINLWHLEITDR--SFNIVDIKPANMEELTEVITAAEFHPNS 238 (447)
T ss_dssp EEEEEEEEEECSCCSSCCCEEEECTTSS-EEEEE-CSSEEEEEETTEEEE--EEEEEECCCSSGGGCCCCEEEEEECSSC
T ss_pred eeeccceEEeccCCCcceEEEEEcCCCC-EEEEe-CCCeEEEEECCCCCc--eeeeeecccccccccCcceEEEEECCCC
Confidence 00112 357999999999999988 99998 799999999985321 11100 1355788999999999955
Q ss_pred CCEEEEEecCCcEEEEECCCCcc----cccccccCC------------CeeEEEecCCCCcEEEEEeCCCcEEEEeCCCC
Q 015484 228 ENLFGSAGDDCQLMIWDLRTNQT----QQRVKAHEK------------EVNYLSFNPYNEWVLATASSDTTVALFDMRKM 291 (406)
Q Consensus 228 ~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~------------~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~ 291 (406)
..+|++++.||.|++||+++++. ...+..|.. .|.+++|+|++. +|++++. +.|++||++..
T Consensus 239 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~-~~v~iwd~~~~ 316 (447)
T 3dw8_B 239 CNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRDY-LSVKVWDLNME 316 (447)
T ss_dssp TTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEEES-SEEEEEETTCC
T ss_pred CcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEeeC-CeEEEEeCCCC
Confidence 59999999999999999999886 566666665 899999999998 8899988 99999999975
Q ss_pred CCCcEEecCCCCC---------------eEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC------CCCe
Q 015484 292 TVPLHILSSHTEE---------------VFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED------GPPE 350 (406)
Q Consensus 292 ~~~~~~~~~h~~~---------------v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~~ 350 (406)
..++..+..|... +..++|+|+++ +|++++.||.|++||+.............. ..+.
T Consensus 317 ~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (447)
T 3dw8_B 317 NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDS-VVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPR 395 (447)
T ss_dssp SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSS-EEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCC
T ss_pred ccccceeeccccccccccccccccccccceEEEECCCCC-EEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCc
Confidence 5567788877532 33499999997 589999999999999987443211100000 0000
Q ss_pred ------------eEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 351 ------------LLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 351 ------------~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
.......+...|..++|+|++. +||+++.++ +++|.-.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~-~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 396 KVCASGKRKKDEISVDSLDFNKKILHTAWHPKEN-IIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSS-EEEEECSSC-EEEEECC
T ss_pred cccccCCcccccccccccccCCceeEEEECCCCC-EEEEEecce-eeeeccc
Confidence 0000113456799999999999 688887665 8888643
No 82
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=7.6e-32 Score=254.74 Aligned_cols=251 Identities=21% Similarity=0.272 Sum_probs=209.3
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecC--CCCCeEEEec
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSP--FKEGYLVSGS 186 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~~l~s~~ 186 (406)
....+|.+.|++++|+|++ +|++|+.||+|++||+.+. .....+.+|...|.+++|++ ++. +|++|+
T Consensus 156 ~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~~~~--------~~~~~~~~h~~~v~~l~~~~~~~~~-~l~s~s 224 (464)
T 3v7d_B 156 LQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKG--------CCTHVFEGHNSTVRCLDIVEYKNIK-YIVTGS 224 (464)
T ss_dssp EEECCCSSCEEEEEECSTT--EEEEEETTSCEEEEETTTT--------EEEEEECCCSSCEEEEEEEESSSCE-EEEEEE
T ss_pred EEEeCCCcCEEEEEEcCCC--EEEEEeCCCCEEEEECCCC--------cEEEEECCCCCccEEEEEecCCCCC-EEEEEc
Confidence 3344799999999999977 7999999999999999873 33677889999999999995 455 999999
Q ss_pred CCCeEEEEeCCCccCCceee-----------------eeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCc
Q 015484 187 HDNKICLWDVSALAQDKVID-----------------AMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ 249 (406)
Q Consensus 187 ~dg~i~iwd~~~~~~~~~~~-----------------~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 249 (406)
.||+|++||+.+........ ....+.+|...+.++.. ++.++++++.||.|++||+++++
T Consensus 225 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~vwd~~~~~ 301 (464)
T 3v7d_B 225 RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG---HGNIVVSGSYDNTLIVWDVAQMK 301 (464)
T ss_dssp TTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE---ETTEEEEEETTSCEEEEETTTTE
T ss_pred CCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcC---CCCEEEEEeCCCeEEEEECCCCc
Confidence 99999999998764321110 13456778888888753 47889999999999999999999
Q ss_pred ccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEE
Q 015484 250 TQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMV 329 (406)
Q Consensus 250 ~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~i 329 (406)
.+..+.+|...|.+++|+|++. ++++|+.||.|++||++++.. +..+.+|...|.+++|++ . +|++++.||.|++
T Consensus 302 ~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~-~~~~~~h~~~v~~~~~~~--~-~l~s~s~dg~v~v 376 (464)
T 3v7d_B 302 CLYILSGHTDRIYSTIYDHERK-RCISASMDTTIRIWDLENGEL-MYTLQGHTALVGLLRLSD--K-FLVSAAADGSIRG 376 (464)
T ss_dssp EEEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECS--S-EEEEEETTSEEEE
T ss_pred EEEEecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcE-EEEEeCCCCcEEEEEEcC--C-EEEEEeCCCcEEE
Confidence 9999999999999999999998 999999999999999998654 888999999999999984 3 6999999999999
Q ss_pred EeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 330 WDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 330 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
||+... ...... .|...+..++|+|++. ++++++ ||.|++||+.++...
T Consensus 377 wd~~~~--------------~~~~~~-~~~~~~~~~~~~~~~~-~l~~~~-dg~i~iwd~~~g~~~ 425 (464)
T 3v7d_B 377 WDANDY--------------SRKFSY-HHTNLSAITTFYVSDN-ILVSGS-ENQFNIYNLRSGKLV 425 (464)
T ss_dssp EETTTC--------------CEEEEE-ECTTCCCEEEEEECSS-EEEEEE-TTEEEEEETTTCCEE
T ss_pred EECCCC--------------ceeeee-cCCCCccEEEEEeCCC-EEEEec-CCeEEEEECCCCcEE
Confidence 999862 222222 2566788899999998 688887 899999999988653
No 83
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=6.9e-32 Score=272.51 Aligned_cols=286 Identities=18% Similarity=0.264 Sum_probs=236.0
Q ss_pred CceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCCce
Q 015484 39 PSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEV 118 (406)
Q Consensus 39 p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 118 (406)
+..++.|.|+. ..+++|.. .+.|.|+++.- .-.......|.+.|
T Consensus 15 ~v~~i~~sp~~------------~~la~~~~-----~g~v~iwd~~~-------------------~~~~~~~~~~~~~v 58 (814)
T 3mkq_A 15 RVKGIDFHPTE------------PWVLTTLY-----SGRVEIWNYET-------------------QVEVRSIQVTETPV 58 (814)
T ss_dssp CEEEEEECSSS------------SEEEEEET-----TSEEEEEETTT-------------------TEEEEEEECCSSCE
T ss_pred ceEEEEECCCC------------CEEEEEeC-----CCEEEEEECCC-------------------CceEEEEecCCCcE
Confidence 56788998842 25666653 36788875321 11233444699999
Q ss_pred eEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCC
Q 015484 119 NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSA 198 (406)
Q Consensus 119 ~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~ 198 (406)
++++|+|++ .+|++|+.||.|+||++.+. .....+.+|...|.+++|+|+++ +|++|+.||.|++||+.+
T Consensus 59 ~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~--------~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~ 128 (814)
T 3mkq_A 59 RAGKFIARK-NWIIVGSDDFRIRVFNYNTG--------EKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWEN 128 (814)
T ss_dssp EEEEEEGGG-TEEEEEETTSEEEEEETTTC--------CEEEEEECCSSCEEEEEECSSSS-EEEEEETTSEEEEEEGGG
T ss_pred EEEEEeCCC-CEEEEEeCCCeEEEEECCCC--------cEEEEEecCCCCEEEEEEeCCCC-EEEEEcCCCEEEEEECCC
Confidence 999999999 68999999999999999873 34677889999999999999998 999999999999999976
Q ss_pred ccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccC-CCeeEEEecC--CCCcEEE
Q 015484 199 LAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHE-KEVNYLSFNP--YNEWVLA 275 (406)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~i~~~~--~~~~~l~ 275 (406)
+. .....+..|...|.+++|+|.++..|++++.||.|++||++++.....+..+. ..+.+++|+| ++. +|+
T Consensus 129 ~~-----~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~ 202 (814)
T 3mkq_A 129 NW-----ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP-YMI 202 (814)
T ss_dssp TS-----EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCC-EEE
T ss_pred Cc-----eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCC-EEE
Confidence 52 12355678999999999999667899999999999999999888777765444 8899999999 887 999
Q ss_pred EEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEe
Q 015484 276 TASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH 355 (406)
Q Consensus 276 ~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 355 (406)
+++.||.|++||+++... +..+..|...|.+++|+|+++ +|++++.||.|++||+.. ...+..+
T Consensus 203 ~~~~dg~i~~~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~v~vwd~~~--------------~~~~~~~ 266 (814)
T 3mkq_A 203 TASDDLTIKIWDYQTKSC-VATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSST--------------YKVEKTL 266 (814)
T ss_dssp EECTTSEEEEEETTTTEE-EEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTT--------------CSEEEEE
T ss_pred EEeCCCEEEEEECCCCcE-EEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCC--------------CcEEEEe
Confidence 999999999999988654 788889999999999999997 699999999999999986 3566677
Q ss_pred cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 356 GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 356 ~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
..|...+.+++|+|++..++++++.|+.+.+|++..+
T Consensus 267 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (814)
T 3mkq_A 267 NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND 303 (814)
T ss_dssp CCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCC
T ss_pred ecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCC
Confidence 7888999999999998754445555778999998654
No 84
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=6.4e-32 Score=255.24 Aligned_cols=245 Identities=25% Similarity=0.400 Sum_probs=206.7
Q ss_pred EEEEeecCCce-eEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec
Q 015484 108 IAQKIRVDGEV-NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS 186 (406)
Q Consensus 108 ~~~~~~h~~~v-~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 186 (406)
.....+|.+.| .++.+. + .+|++|+.||+|++||+.+. .....+.+|...|.+++|++++ .|++|+
T Consensus 114 ~~~l~~h~~~v~~~~~~~--~-~~l~sgs~dg~i~vwd~~~~--------~~~~~~~~h~~~V~~l~~~~~~--~l~s~s 180 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQFE--D-NYVITGADDKMIRVYDSINK--------KFLLQLSGHDGGVWALKYAHGG--ILVSGS 180 (464)
T ss_dssp EEEEECCSSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTT--------EEEEEECCCSSCEEEEEECSTT--EEEEEE
T ss_pred eEEEcCCCCCcEEEEEEC--C-CEEEEEcCCCcEEEEECCCC--------cEEEEEeCCCcCEEEEEEcCCC--EEEEEe
Confidence 34456788775 666664 3 58999999999999999873 3467788999999999999865 899999
Q ss_pred CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeC-CCCCEEEEEecCCcEEEEECCCCccc--------------
Q 015484 187 HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHL-KNENLFGSAGDDCQLMIWDLRTNQTQ-------------- 251 (406)
Q Consensus 187 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p-~~~~~l~~~~~dg~i~i~d~~~~~~~-------------- 251 (406)
.||+|++||+.++. .+..+.+|...|.+++|++ .++.++++++.||.|++||++++...
T Consensus 181 ~dg~i~vwd~~~~~------~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 254 (464)
T 3v7d_B 181 TDRTVRVWDIKKGC------CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 254 (464)
T ss_dssp TTSCEEEEETTTTE------EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEES
T ss_pred CCCCEEEEECCCCc------EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEee
Confidence 99999999998764 3456678999999999985 25688999999999999999876532
Q ss_pred ---------ccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEe
Q 015484 252 ---------QRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSA 322 (406)
Q Consensus 252 ---------~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~ 322 (406)
..+.+|...+.++. +++. ++++|+.||.|++||+++... +..+.+|...|.+++|+|+++ ++++|+
T Consensus 255 ~~~~~~~~~~~~~~~~~~v~~~~--~~~~-~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~sg~ 329 (464)
T 3v7d_B 255 TPEENPYFVGVLRGHMASVRTVS--GHGN-IVVSGSYDNTLIVWDVAQMKC-LYILSGHTDRIYSTIYDHERK-RCISAS 329 (464)
T ss_dssp CGGGCTTEEEEECCCSSCEEEEE--EETT-EEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEEETTTT-EEEEEE
T ss_pred ccCCCeEEEEEccCccceEEEEc--CCCC-EEEEEeCCCeEEEEECCCCcE-EEEecCCCCCEEEEEEcCCCC-EEEEEe
Confidence 23466777887774 5566 899999999999999998654 788899999999999999997 699999
Q ss_pred CCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 323 DDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 323 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
.||.|++||+++ ...+..+.+|...|.+++|++ . .+++++.||.|++||+.++.
T Consensus 330 ~dg~i~vwd~~~--------------~~~~~~~~~h~~~v~~~~~~~--~-~l~s~s~dg~v~vwd~~~~~ 383 (464)
T 3v7d_B 330 MDTTIRIWDLEN--------------GELMYTLQGHTALVGLLRLSD--K-FLVSAAADGSIRGWDANDYS 383 (464)
T ss_dssp TTSCEEEEETTT--------------TEEEEEECCCSSCEEEEEECS--S-EEEEEETTSEEEEEETTTCC
T ss_pred CCCcEEEEECCC--------------CcEEEEEeCCCCcEEEEEEcC--C-EEEEEeCCCcEEEEECCCCc
Confidence 999999999986 467778889999999999984 4 79999999999999998764
No 85
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.8e-31 Score=239.48 Aligned_cols=277 Identities=13% Similarity=0.142 Sum_probs=223.9
Q ss_pred CceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCCce
Q 015484 39 PSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEV 118 (406)
Q Consensus 39 p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 118 (406)
+..++.|.|+. ..++.|.. ++.|.++++.-. . +.........|...|
T Consensus 13 ~v~~~~~s~~~------------~~l~~~~~-----d~~v~iw~~~~~---------~-------~~~~~~~~~~~~~~v 59 (342)
T 1yfq_A 13 YISDIKIIPSK------------SLLLITSW-----DGSLTVYKFDIQ---------A-------KNVDLLQSLRYKHPL 59 (342)
T ss_dssp CEEEEEEEGGG------------TEEEEEET-----TSEEEEEEEETT---------T-------TEEEEEEEEECSSCE
T ss_pred cEEEEEEcCCC------------CEEEEEcC-----CCeEEEEEeCCC---------C-------ccccceeeeecCCce
Confidence 57789998842 15566553 378999987722 0 123445566899999
Q ss_pred eEEEEcCCCCc-EEEEEeCCCeEEEEeC-CCccccccCCCCCceeeeC--CCCCeeEEEecCCCCCeEEEecCCCeEEEE
Q 015484 119 NRARCMPQKPN-LVGTKTSSCEVYVFDC-AKQAEKQQDDCDPDLRLKG--HDKEGYGLSWSPFKEGYLVSGSHDNKICLW 194 (406)
Q Consensus 119 ~~i~~~p~~~~-~l~~~~~dg~i~iw~~-~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 194 (406)
++++|+|++ . +|++|+.||.|++|++ ... ....+.+ |...|.+++|+| +. +|++++.||.|++|
T Consensus 60 ~~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~---------~~~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iw 127 (342)
T 1yfq_A 60 LCCNFIDNT-DLQIYVGTVQGEILKVDLIGSP---------SFQALTNNEANLGICRICKYG-DD-KLIAASWDGLIEVI 127 (342)
T ss_dssp EEEEEEESS-SEEEEEEETTSCEEEECSSSSS---------SEEECBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEE
T ss_pred EEEEECCCC-CcEEEEEcCCCeEEEEEeccCC---------ceEeccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEE
Confidence 999999998 6 8999999999999999 763 1356777 999999999999 76 99999999999999
Q ss_pred eCCC---------ccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCC-Cccc--ccccccCCCee
Q 015484 195 DVSA---------LAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT-NQTQ--QRVKAHEKEVN 262 (406)
Q Consensus 195 d~~~---------~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~--~~~~~~~~~v~ 262 (406)
|+.+ ... +..+. |...|.+++|+|. . +++++.|+.|++||+++ +... .....+...+.
T Consensus 128 d~~~~~~~~~~~~~~~------~~~~~-~~~~v~~~~~~~~-~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~ 197 (342)
T 1yfq_A 128 DPRNYGDGVIAVKNLN------SNNTK-VKNKIFTMDTNSS-R--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIR 197 (342)
T ss_dssp CHHHHTTBCEEEEESC------SSSSS-SCCCEEEEEECSS-E--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEE
T ss_pred cccccccccccccCCe------eeEEe-eCCceEEEEecCC-c--EEEEeCCCeEEEEECCccccccceeeecCCCCcee
Confidence 9876 322 22333 7889999999973 3 88999999999999998 5532 23356788999
Q ss_pred EEEecC-CCCcEEEEEeCCCcEEEEeCCCC-----CCCcEEecCCCC---------CeEEEEEcCCCCCEEEEEeCCCcE
Q 015484 263 YLSFNP-YNEWVLATASSDTTVALFDMRKM-----TVPLHILSSHTE---------EVFQVEWDPNHETVLASSADDRRL 327 (406)
Q Consensus 263 ~i~~~~-~~~~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~~h~~---------~v~~i~~~p~~~~~l~s~~~dg~i 327 (406)
+++|+| ++. ++++++.||.|++||++.. ..+...+..|.. .|.+++|+|+++ +|++++.||.|
T Consensus 198 ~i~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i 275 (342)
T 1yfq_A 198 DVALLPKEQE-GYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAGSDGII 275 (342)
T ss_dssp EEEECSGGGC-EEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-CEEEEETTSCE
T ss_pred EEEECCCCCC-EEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCC-EEEEecCCceE
Confidence 999999 888 9999999999999999886 355778888865 999999999997 58999999999
Q ss_pred EEEeCCCCCcccccccccCCCCeeEEEecCC-CCCeeeEEeCCCCCcEEEEEeCCCc-EEEEeC
Q 015484 328 MVWDLNRIGDEQLELDAEDGPPELLFSHGGH-KAKISDFSWNKNDPWVISSVADDNT-VQVWQM 389 (406)
Q Consensus 328 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~~l~s~~~dg~-i~iw~~ 389 (406)
++||+.+ ...+..+.+| ...|.+++ |+++ +|++++.||. .+.|..
T Consensus 276 ~vwd~~~--------------~~~~~~~~~~h~~~v~~~~--~~~~-~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 276 SCWNLQT--------------RKKIKNFAKFNEDSVVKIA--CSDN-ILCLATSDDTFKTNAAI 322 (342)
T ss_dssp EEEETTT--------------TEEEEECCCCSSSEEEEEE--ECSS-EEEEEEECTHHHHCSSS
T ss_pred EEEcCcc--------------HhHhhhhhcccCCCceEec--CCCC-eEEEEecCCcccccccc
Confidence 9999986 4667778888 99999999 9998 6999999998 555443
No 86
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=8.5e-32 Score=252.34 Aligned_cols=250 Identities=21% Similarity=0.344 Sum_probs=204.9
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
...+|.+.|.+++| ++ .+|++|+.||.|++||+.+. .....+.+|...|.+++|++ . .|++|+.||
T Consensus 168 ~~~~h~~~v~~l~~--~~-~~l~sg~~dg~i~vwd~~~~--------~~~~~~~~h~~~v~~l~~~~--~-~l~s~s~dg 233 (435)
T 1p22_A 168 ILTGHTGSVLCLQY--DE-RVIITGSSDSTVRVWDVNTG--------EMLNTLIHHCEAVLHLRFNN--G-MMVTCSKDR 233 (435)
T ss_dssp EECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEESSSC--------CEEEEECCCCSCEEEEECCT--T-EEEEEETTS
T ss_pred EEcCCCCcEEEEEE--CC-CEEEEEcCCCeEEEEECCCC--------cEEEEEcCCCCcEEEEEEcC--C-EEEEeeCCC
Confidence 34579999999999 44 68999999999999999873 34677889999999999973 4 899999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~ 269 (406)
.|++||+.++... .....+.+|...|.+++|. +.++++|+.||.|++||+++++.+..+..|...|.+++++
T Consensus 234 ~i~vwd~~~~~~~---~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-- 305 (435)
T 1p22_A 234 SIAVWDMASPTDI---TLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-- 305 (435)
T ss_dssp CEEEEECSSSSCC---EEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--
T ss_pred cEEEEeCCCCCCc---eeeeEecCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--
Confidence 9999999886542 2235567899999999994 6789999999999999999999999999999999999995
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCC
Q 015484 270 NEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (406)
+. ++++|+.||.|++||++++.. +..+.+|...|.+++| ++. +|++|+.||.|++||+......... ...
T Consensus 306 ~~-~l~~g~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~~~~--~~~-~l~sg~~dg~i~vwd~~~~~~~~~~-----~~~ 375 (435)
T 1p22_A 306 DR-LVVSGSSDNTIRLWDIECGAC-LRVLEGHEELVRCIRF--DNK-RIVSGAYDGKIKVWDLVAALDPRAP-----AGT 375 (435)
T ss_dssp TT-EEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEC--CSS-EEEEEETTSCEEEEEHHHHTSTTSC-----TTT
T ss_pred CC-EEEEEeCCCeEEEEECCCCCE-EEEEeCCcCcEEEEEe--cCC-EEEEEeCCCcEEEEECCCCCCcccc-----ccc
Confidence 45 899999999999999998654 8889999999999999 454 6999999999999999763321110 012
Q ss_pred eeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 350 ELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 350 ~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
..+..+.+|...|.+++| ++. .|++++.||.|++|++.++..
T Consensus 376 ~~~~~~~~h~~~v~~l~~--~~~-~l~s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 376 LCLRTLVEHSGRVFRLQF--DEF-QIVSSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp TEEEEECCCSSCCCCEEE--CSS-CEEECCSSSEEEEEC------
T ss_pred hheeeccCCCCCeEEEEe--CCC-EEEEEeCCCEEEEEECCCCCC
Confidence 267778899999999999 555 589999999999999987654
No 87
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.5e-32 Score=287.75 Aligned_cols=250 Identities=21% Similarity=0.379 Sum_probs=218.0
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
....+|.+.|++++|+|++ .+||+|+.||+|+|||+.+. .....+.+|...|.+++|+|++. +|++|+.|
T Consensus 609 ~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~vw~~~~~--------~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d 678 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDG-QRIASCGADKTLQVFKAETG--------EKLLDIKAHEDEVLCCAFSSDDS-YIATCSAD 678 (1249)
T ss_dssp EEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTC--------CEEEEECCCSSCEEEEEECTTSS-EEEEEETT
T ss_pred EEEecccccEEEEEECCCC-CEEEEEeCCCeEEEEECCCC--------CEEEEeccCCCCEEEEEEecCCC-EEEEEeCC
Confidence 3456899999999999999 68999999999999999873 44677889999999999999998 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCC-CCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEec
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLK-NENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFN 267 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~ 267 (406)
|+|++||+.++. .+..+.+|...|.+++|+|. +..++++++.||.|++||+++++....+.+|...|++++|+
T Consensus 679 ~~v~vwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~s 752 (1249)
T 3sfz_A 679 KKVKIWDSATGK------LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFS 752 (1249)
T ss_dssp SEEEEEETTTCC------EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEEC
T ss_pred CeEEEEECCCCc------eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEe
Confidence 999999998864 34566789999999999985 35688899999999999999999998999999999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCC-----------------------------------------------------
Q 015484 268 PYNEWVLATASSDTTVALFDMRKMTVP----------------------------------------------------- 294 (406)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vwd~~~~~~~----------------------------------------------------- 294 (406)
|++. +|++++.||.|++||+++....
T Consensus 753 p~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~ 831 (1249)
T 3sfz_A 753 PDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGL 831 (1249)
T ss_dssp SSTT-EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCE
T ss_pred cCCC-EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCc
Confidence 9999 9999999999999998754210
Q ss_pred c-EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCc
Q 015484 295 L-HILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPW 373 (406)
Q Consensus 295 ~-~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 373 (406)
+ ....+|...|.+++|+|+++ ++++++.||.|++||+.. ...+..+.+|...|.+++|+|+++
T Consensus 832 ~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~v~vwd~~~--------------~~~~~~~~~h~~~v~~v~~spdg~- 895 (1249)
T 3sfz_A 832 LAEIHTGHHSTIQYCDFSPYDH-LAVIALSQYCVELWNIDS--------------RLKVADCRGHLSWVHGVMFSPDGS- 895 (1249)
T ss_dssp EEEEECSSSSCCCEEEECSSTT-EEEEECSSSCEEEEETTT--------------TEEEEEECCCSSCEEEEEECTTSS-
T ss_pred eeEEcCCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEEcCC--------------CceeeecCCCccceEEEEECCCCC-
Confidence 0 01126778899999999987 689999999999999986 466777889999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCC
Q 015484 374 VISSVADDNTVQVWQMTD 391 (406)
Q Consensus 374 ~l~s~~~dg~i~iw~~~~ 391 (406)
.+++++.||.|++|++.+
T Consensus 896 ~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 896 SFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp EEEEEETTSCEEEEEHHH
T ss_pred EEEEEeCCCeEEEEEccc
Confidence 689999999999999764
No 88
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-33 Score=262.09 Aligned_cols=264 Identities=11% Similarity=0.205 Sum_probs=192.7
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCc---cccccCCCCCceeee--C--CCCCeeEEE--ecCCCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQ---AEKQQDDCDPDLRLK--G--HDKEGYGLS--WSPFKEGY 181 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~--~--h~~~v~~l~--~~~~~~~~ 181 (406)
.+.|.+.|++++|+|++ .+|++|+.||.|++||+... ..........+..+. . +...+.++. +++++. +
T Consensus 107 ~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 184 (437)
T 3gre_A 107 TYDCSSTVTQITMIPNF-DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS-L 184 (437)
T ss_dssp EEECSSCEEEEEECTTS-SEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE-E
T ss_pred eccCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC-E
Confidence 45799999999999988 68999999999999999521 110000000111111 1 456666776 556677 9
Q ss_pred EEEecCCCeEEEEeCCCccCCceeeeeeeeec--cCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccc-ccC
Q 015484 182 LVSGSHDNKICLWDVSALAQDKVIDAMHVYEA--HESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK-AHE 258 (406)
Q Consensus 182 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~ 258 (406)
|++|+.||.|++||++++.. +..+.. |...|++++|+| ++.+|++|+.||.|++||+++++.+..+. .|.
T Consensus 185 l~~~~~d~~i~iwd~~~~~~------~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 257 (437)
T 3gre_A 185 LVALTNLSRVIIFDIRTLER------LQIIENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDH 257 (437)
T ss_dssp EEEEETTSEEEEEETTTCCE------EEEEECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTC
T ss_pred EEEEeCCCeEEEEeCCCCee------eEEEccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCC
Confidence 99999999999999988643 344555 788999999999 68999999999999999999988888774 677
Q ss_pred CCeeEEEecC----CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC--------------------------CCCCeEEE
Q 015484 259 KEVNYLSFNP----YNEWVLATASSDTTVALFDMRKMTVPLHILSS--------------------------HTEEVFQV 308 (406)
Q Consensus 259 ~~v~~i~~~~----~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--------------------------h~~~v~~i 308 (406)
..|.+++|+| ++. +|++|+.||.|++||++++.. +..+.. |...|.++
T Consensus 258 ~~v~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l 335 (437)
T 3gre_A 258 APITHVEVCQFYGKNSV-IVVGGSSKTFLTIWNFVKGHC-QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTI 335 (437)
T ss_dssp EEEEEEEECTTTCTTEE-EEEEESTTEEEEEEETTTTEE-EEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCE
T ss_pred CceEEEEeccccCCCcc-EEEEEcCCCcEEEEEcCCCcE-EEEEEcCCCCCccceecccccccccceecccccCCceEEE
Confidence 8999996665 455 899999999999999987653 333332 56678899
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEeCCCCCccccccccc-----------------------CCCCeeEEEecCCCCCeeeE
Q 015484 309 EWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAE-----------------------DGPPELLFSHGGHKAKISDF 365 (406)
Q Consensus 309 ~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~h~~~v~~~ 365 (406)
+|+ +++ +|++++.||.|++||+............. ............|...|+++
T Consensus 336 ~~~-~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i 413 (437)
T 3gre_A 336 SVS-NDK-ILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSI 413 (437)
T ss_dssp EEE-TTE-EEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEE
T ss_pred EEC-Cce-EEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeE
Confidence 999 554 79999999999999998754332221100 00000111123489999999
Q ss_pred EeCCC--CCcEEEEEeCCCcEEEEe
Q 015484 366 SWNKN--DPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 366 ~~s~~--~~~~l~s~~~dg~i~iw~ 388 (406)
+|+++ +. +|++|+.||.|+||+
T Consensus 414 ~~~~~~~~~-~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 414 STCEVDETP-LLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEESSSSE-EEEEEETTSCEEEEC
T ss_pred eeeccCCce-EEEEEcCCceEEEeC
Confidence 99998 55 899999999999995
No 89
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.5e-32 Score=249.63 Aligned_cols=246 Identities=18% Similarity=0.302 Sum_probs=200.6
Q ss_pred EEEeecCCc--eeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC-CCCCeeEEEecCCCCCeEEEe
Q 015484 109 AQKIRVDGE--VNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG-HDKEGYGLSWSPFKEGYLVSG 185 (406)
Q Consensus 109 ~~~~~h~~~--v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~ 185 (406)
....+|... +.++.|++. .+++++.||.|++|++.+.. ....+.. |...|.+++|+|++. +|++|
T Consensus 85 ~~~~~~~~~~~~~~~~~s~~---~l~~~~~d~~v~lw~~~~~~--------~~~~~~~~~~~~v~~v~~s~~~~-~l~~~ 152 (401)
T 4aez_A 85 LDAPGIIDDYYLNLLDWSNL---NVVAVALERNVYVWNADSGS--------VSALAETDESTYVASVKWSHDGS-FLSVG 152 (401)
T ss_dssp EECTTCCCCTTCBCEEECTT---SEEEEEETTEEEEEETTTCC--------EEEEEECCTTCCEEEEEECTTSS-EEEEE
T ss_pred eeCCCCcCCceEEEEeecCC---CEEEEECCCeEEEeeCCCCc--------EeEeeecCCCCCEEEEEECCCCC-EEEEE
Confidence 333356554 455666652 36778899999999998742 2333443 889999999999888 99999
Q ss_pred cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCC-CcccccccccCCCeeEE
Q 015484 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT-NQTQQRVKAHEKEVNYL 264 (406)
Q Consensus 186 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~i 264 (406)
+.||.|++||+.+++. +..+..|...|.+++|+ +.++++++.||.|++||++. ...+..+..|...|.++
T Consensus 153 ~~dg~i~iwd~~~~~~------~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 223 (401)
T 4aez_A 153 LGNGLVDIYDVESQTK------LRTMAGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGL 223 (401)
T ss_dssp ETTSCEEEEETTTCCE------EEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEE
T ss_pred CCCCeEEEEECcCCeE------EEEecCCCCceEEEEEC---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEE
Confidence 9999999999987642 35566899999999996 46899999999999999994 55577778899999999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEe--CCCcEEEEeCCCCCcccccc
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSA--DDRRLMVWDLNRIGDEQLEL 342 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~ 342 (406)
+|+|++. +|++|+.||.|++||+++... +..+..|...|.+++|+|++..++++++ .|+.|++||+..
T Consensus 224 ~~~~~~~-~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~-------- 293 (401)
T 4aez_A 224 AWRSDGL-QLASGGNDNVVQIWDARSSIP-KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT-------- 293 (401)
T ss_dssp EECTTSS-EEEEEETTSCEEEEETTCSSE-EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT--------
T ss_pred EEcCCCC-EEEEEeCCCeEEEccCCCCCc-cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC--------
Confidence 9999988 999999999999999998554 7788899999999999999888888876 799999999986
Q ss_pred cccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEE--EeCCCcEEEEeCCCcc
Q 015484 343 DAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISS--VADDNTVQVWQMTDSI 393 (406)
Q Consensus 343 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s--~~~dg~i~iw~~~~~~ 393 (406)
...+..+. +...|.+++|+|++++ +++ |+.||.|++|++.++.
T Consensus 294 ------~~~~~~~~-~~~~v~~~~~s~~~~~-l~~~~g~~dg~i~v~~~~~~~ 338 (401)
T 4aez_A 294 ------GARVNTVD-AGSQVTSLIWSPHSKE-IMSTHGFPDNNLSIWSYSSSG 338 (401)
T ss_dssp ------CCEEEEEE-CSSCEEEEEECSSSSE-EEEEECTTTCEEEEEEEETTE
T ss_pred ------CCEEEEEe-CCCcEEEEEECCCCCe-EEEEeecCCCcEEEEecCCcc
Confidence 23344443 5678999999999995 556 3489999999998753
No 90
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=9.1e-33 Score=258.89 Aligned_cols=217 Identities=15% Similarity=0.244 Sum_probs=180.1
Q ss_pred CceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC
Q 015484 158 PDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD 237 (406)
Q Consensus 158 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d 237 (406)
......+|...|++|+|+|.+..+||+|+.||.|+|||+.++... ....+.+|...|++|+|+|.++.+|++++.|
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~----~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D 186 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP----TFIKGIGAGGSITGLKFNPLNTNQFYASSME 186 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC----EEECCCSSSCCCCEEEECSSCTTEEEEECSS
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce----eEEEccCCCCCEEEEEEeCCCCCEEEEEeCC
Confidence 344567799999999999976669999999999999999876432 2244567999999999999788999999999
Q ss_pred CcEEEEECCCCcccccc--cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCC
Q 015484 238 CQLMIWDLRTNQTQQRV--KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHE 315 (406)
Q Consensus 238 g~i~i~d~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~ 315 (406)
|+|++||++++...... ..+...+.+++|+|++. +|++|+.||.|++||++.. .+..+.+|...|.+++|+|+++
T Consensus 187 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~~--~~~~~~~h~~~v~~v~~~p~~~ 263 (435)
T 4e54_B 187 GTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDGK--ELWNLRMHKKKVTHVALNPCCD 263 (435)
T ss_dssp SCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSSC--BCCCSBCCSSCEEEEEECTTCS
T ss_pred CEEEEeeccCCceeEEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCcc--eeEEEecccceEEeeeecCCCc
Confidence 99999999876443222 33445678999999998 9999999999999999753 3677889999999999999998
Q ss_pred CEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 316 TVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 316 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
.+|++++.|+.|+|||++..... ..+....+|...|++++|+|++. +|++++.||.|+||++.++.
T Consensus 264 ~~~~s~s~d~~v~iwd~~~~~~~-----------~~~~~~~~h~~~v~~~~~spdg~-~l~s~~~D~~i~iwd~~~~~ 329 (435)
T 4e54_B 264 WFLATASVDQTVKIWDLRQVRGK-----------ASFLYSLPHRHPVNAACFSPDGA-RLLTTDQKSEIRVYSASQWD 329 (435)
T ss_dssp SEEEEEETTSBCCEEETTTCCSS-----------SCCSBCCBCSSCEEECCBCTTSS-EEEEEESSSCEEEEESSSSS
T ss_pred eEEEEecCcceeeEEeccccccc-----------ceEEEeeeccccccceeECCCCC-eeEEEcCCCEEEEEECCCCc
Confidence 88999999999999999874322 11222357899999999999999 68999999999999998753
No 91
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=8.5e-32 Score=263.08 Aligned_cols=254 Identities=19% Similarity=0.329 Sum_probs=213.7
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCC-eeEEEecC--CCCCeEEEecCCC
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKE-GYGLSWSP--FKEGYLVSGSHDN 189 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~--~~~~~l~s~~~dg 189 (406)
.|.+.|++++|+|++ .+||+++ ++.|+||++.+... ...+...+.+|... |++++|+| ++. +|++|+.||
T Consensus 16 ~~~~~v~~~~~spdg-~~l~~~~-~~~v~v~~~~~~~~----~~~~~~~~~~h~~~~v~~~~~sp~~~~~-~l~s~~~dg 88 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTT-NAIAYPC-GKSAFVRCLDDGDS----KVPPVVQFTGHGSSVVTTVKFSPIKGSQ-YLCSGDESG 88 (615)
T ss_dssp CCTTCCCCCEEETTT-TEEEEEE-TTEEEEEECCSSCC----SSCSEEEECTTTTSCEEEEEECSSTTCC-EEEEEETTS
T ss_pred CccCceeEEEECCCC-CEEEEec-CCeEEEEECCCCCC----ccccceEEecCCCceEEEEEECcCCCCC-EEEEecCCC
Confidence 578999999999999 5788877 78999999986311 11457788999999 99999999 988 999999999
Q ss_pred eEEEEeCCCccCCc--eeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC----CcEEEEECCCCcccccccccCCCeeE
Q 015484 190 KICLWDVSALAQDK--VIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD----CQLMIWDLRTNQTQQRVKAHEKEVNY 263 (406)
Q Consensus 190 ~i~iwd~~~~~~~~--~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~v~~ 263 (406)
.|++||+.++.... .......+..|...|.+++|+| ++.++++++.+ +.|++|| .++.+..+..|...|.+
T Consensus 89 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~ 165 (615)
T 1pgu_A 89 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINA 165 (615)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEE
T ss_pred EEEEEeCCCCcccccccccccchhhcccccEEEEEEeC-CCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEE
Confidence 99999997541111 1233456677899999999999 67888888877 6888888 56677788889999999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCC---CeEEEEEcCC-CCCEEEEEeCCCcEEEEeCCCCCccc
Q 015484 264 LSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTE---EVFQVEWDPN-HETVLASSADDRRLMVWDLNRIGDEQ 339 (406)
Q Consensus 264 i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~---~v~~i~~~p~-~~~~l~s~~~dg~i~iwd~~~~~~~~ 339 (406)
++|+|+++.++++++.|+.|++||++.... +..+..|.. .|.+++|+|+ ++ +|++++.||.|++||+..
T Consensus 166 ~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~----- 238 (615)
T 1pgu_A 166 CHLKQSRPMRSMTVGDDGSVVFYQGPPFKF-SASDRTHHKQGSFVRDVEFSPDSGE-FVITVGSDRKISCFDGKS----- 238 (615)
T ss_dssp EEECSSSSCEEEEEETTTEEEEEETTTBEE-EEEECSSSCTTCCEEEEEECSTTCC-EEEEEETTCCEEEEETTT-----
T ss_pred EEECCCCCcEEEEEeCCCcEEEEeCCCcce-eeeecccCCCCceEEEEEECCCCCC-EEEEEeCCCeEEEEECCC-----
Confidence 999999987899999999999999987654 778888999 9999999999 76 699999999999999986
Q ss_pred ccccccCCCCeeEEEe-c---CCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 340 LELDAEDGPPELLFSH-G---GHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 340 ~~~~~~~~~~~~~~~~-~---~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.+.+..+ . +|...|.+++|+ ++. +|++++.|+.|++|++.++..
T Consensus 239 ---------~~~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~~wd~~~~~~ 286 (615)
T 1pgu_A 239 ---------GEFLKYIEDDQEPVQGGIFALSWL-DSQ-KFATVGADATIRVWDVTTSKC 286 (615)
T ss_dssp ---------CCEEEECCBTTBCCCSCEEEEEES-SSS-EEEEEETTSEEEEEETTTTEE
T ss_pred ---------CCEeEEecccccccCCceEEEEEc-CCC-EEEEEcCCCcEEEEECCCCcE
Confidence 3445555 4 799999999999 888 789999999999999987643
No 92
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=7.6e-32 Score=241.70 Aligned_cols=251 Identities=19% Similarity=0.283 Sum_probs=196.4
Q ss_pred CceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCCce
Q 015484 39 PSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEV 118 (406)
Q Consensus 39 p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 118 (406)
+..+++|.|+. .+++.|.. ++.|.++++.-. .........+|.+.|
T Consensus 15 ~V~~v~~s~~g------------~~lasgs~-----D~~v~lwd~~~~-----------------~~~~~~~l~gH~~~V 60 (316)
T 3bg1_A 15 MIHDAQMDYYG------------TRLATCSS-----DRSVKIFDVRNG-----------------GQILIADLRGHEGPV 60 (316)
T ss_dssp CEEEEEECGGG------------CEEEEEET-----TTEEEEEEEETT-----------------EEEEEEEEECCSSCE
T ss_pred eEEEeeEcCCC------------CEEEEEeC-----CCeEEEEEecCC-----------------CcEEEEEEcCCCccE
Confidence 67788997731 25666554 478889887621 011233455799999
Q ss_pred eEEEEcCC-CCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC--CCCeEEEecCCCeEEEEe
Q 015484 119 NRARCMPQ-KPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF--KEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 119 ~~i~~~p~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~dg~i~iwd 195 (406)
++++|+|. ...+|++|+.|++|+|||+... .......+.+|...|.+++|+|+ +. +|++|+.||+|++||
T Consensus 61 ~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~------~~~~~~~~~~h~~~V~~v~~~p~~~g~-~lasgs~D~~i~lwd 133 (316)
T 3bg1_A 61 WQVAWAHPMYGNILASCSYDRKVIIWREENG------TWEKSHEHAGHDSSVNSVCWAPHDYGL-ILACGSSDGAISLLT 133 (316)
T ss_dssp EEEEECCGGGSSCEEEEETTSCEEEECCSSS------CCCEEEEECCCSSCCCEEEECCTTTCS-CEEEECSSSCEEEEE
T ss_pred EEEEeCCCCCCCEEEEEECCCEEEEEECCCC------cceEEEEccCCCCceEEEEECCCCCCc-EEEEEcCCCCEEEEe
Confidence 99999863 2368999999999999999863 23345677899999999999997 55 899999999999999
Q ss_pred CCCccCCceeeeeeeeeccCccEEEEEeeCCC----------------CCEEEEEecCCcEEEEECCCC---cccccccc
Q 015484 196 VSALAQDKVIDAMHVYEAHESVVEDVSWHLKN----------------ENLFGSAGDDCQLMIWDLRTN---QTQQRVKA 256 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~----------------~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~ 256 (406)
+..... ......+..|...|.+++|+|.. +.+|++|+.|+.|++||++.. +.+..+.+
T Consensus 134 ~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~ 210 (316)
T 3bg1_A 134 YTGEGQ---WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEA 210 (316)
T ss_dssp ECSSSC---EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBC
T ss_pred cCCCCC---cceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeeccc
Confidence 986532 12224456788899999999842 368999999999999999755 34667788
Q ss_pred cCCCeeEEEecCCC---CcEEEEEeCCCcEEEEeCCCCC---CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEE
Q 015484 257 HEKEVNYLSFNPYN---EWVLATASSDTTVALFDMRKMT---VPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVW 330 (406)
Q Consensus 257 ~~~~v~~i~~~~~~---~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iw 330 (406)
|...|++++|+|++ ..+|++++.||+|++||++... .....+..|...|.+++|+|+++ +|++++.||.|+||
T Consensus 211 h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~-~las~~~D~~v~lw 289 (316)
T 3bg1_A 211 HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITAN-ILAVSGGDNKVTLW 289 (316)
T ss_dssp CSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTC-CEEEEESSSCEEEE
T ss_pred CCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCC-EEEEEcCCCeEEEE
Confidence 99999999999986 2389999999999999998632 12344567889999999999997 59999999999999
Q ss_pred eCCC
Q 015484 331 DLNR 334 (406)
Q Consensus 331 d~~~ 334 (406)
+...
T Consensus 290 ~~~~ 293 (316)
T 3bg1_A 290 KESV 293 (316)
T ss_dssp EECT
T ss_pred EECC
Confidence 9764
No 93
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.1e-31 Score=251.07 Aligned_cols=219 Identities=20% Similarity=0.390 Sum_probs=184.6
Q ss_pred eeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCc----eeeeeeeeeccCccEEEEEeeCCCCCEEEEEe
Q 015484 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDK----VIDAMHVYEAHESVVEDVSWHLKNENLFGSAG 235 (406)
Q Consensus 160 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~ 235 (406)
.....|.+.|++++|+|++..+|++++.||.|++|++....... ...+...+.+|...|.+++|+|.+..+|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 44567999999999999754499999999999999997631111 13345667789999999999996555999999
Q ss_pred cCCcEEEEECCCCcc-------cccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC--CCcEEecCCCCCeE
Q 015484 236 DDCQLMIWDLRTNQT-------QQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT--VPLHILSSHTEEVF 306 (406)
Q Consensus 236 ~dg~i~i~d~~~~~~-------~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~h~~~v~ 306 (406)
.||.|++||++.+.. ...+..|...|.+++|+|.+..+|++++.||.|++||++... .++..+..|...|+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999987432 344567899999999999666699999999999999999863 55778889999999
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEE
Q 015484 307 QVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQV 386 (406)
Q Consensus 307 ~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~i 386 (406)
+++|+|+++++|++|+.||.|++||++... ..+..+.+|...|.+++|+|+++++|++++.||.|+|
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-------------~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~i 348 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLK-------------LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 348 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTT-------------SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEE
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-------------CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEE
Confidence 999999998889999999999999998632 3345566799999999999999878999999999999
Q ss_pred EeCCC
Q 015484 387 WQMTD 391 (406)
Q Consensus 387 w~~~~ 391 (406)
|++..
T Consensus 349 wd~~~ 353 (430)
T 2xyi_A 349 WDLSK 353 (430)
T ss_dssp EEGGG
T ss_pred EeCCC
Confidence 99987
No 94
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.1e-31 Score=277.80 Aligned_cols=266 Identities=20% Similarity=0.364 Sum_probs=216.6
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCC-CeEEEecC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKE-GYLVSGSH 187 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~ 187 (406)
....+|.+.|.+++|+|++ .+||+|+.||.|+|||+.+. .....+.+|...|.+++|+|++. .++++|+.
T Consensus 651 ~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~ 721 (1249)
T 3sfz_A 651 LDIKAHEDEVLCCAFSSDD-SYIATCSADKKVKIWDSATG--------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSN 721 (1249)
T ss_dssp EEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTC--------CEEEEEECCSSCEEEEEECSSSSCCEEEEEET
T ss_pred EEeccCCCCEEEEEEecCC-CEEEEEeCCCeEEEEECCCC--------ceEEEEcCCCCcEEEEEEecCCCceEEEEEeC
Confidence 3445799999999999999 68999999999999999873 44778889999999999999532 27899999
Q ss_pred CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-------------
Q 015484 188 DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV------------- 254 (406)
Q Consensus 188 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------------- 254 (406)
||.|++||+.++. +...+.+|...|.+++|+| ++.++++++.||.|++||+++++....+
T Consensus 722 d~~v~vwd~~~~~------~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 794 (1249)
T 3sfz_A 722 DFFLKLWDLNQKE------CRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPP 794 (1249)
T ss_dssp TSCEEEEETTSSS------EEEEECCCSSCEEEEEECS-STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC-------
T ss_pred CCeEEEEECCCcc------hhheecCCCCCEEEEEEec-CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCcc
Confidence 9999999998864 2355678999999999999 7889999999999999999776432211
Q ss_pred ------------------------------------------cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC
Q 015484 255 ------------------------------------------KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT 292 (406)
Q Consensus 255 ------------------------------------------~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 292 (406)
.+|...|.+++|+|++. ++++++.||.|++||+.+..
T Consensus 795 ~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~v~vwd~~~~~ 873 (1249)
T 3sfz_A 795 EDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH-LAVIALSQYCVELWNIDSRL 873 (1249)
T ss_dssp -CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTT-EEEEECSSSCEEEEETTTTE
T ss_pred ccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCc
Confidence 15678899999999998 99999999999999999865
Q ss_pred CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccc---------------------------------
Q 015484 293 VPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ--------------------------------- 339 (406)
Q Consensus 293 ~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~--------------------------------- 339 (406)
. +..+.+|...|.+++|+|+++ .|++++.||.|++|++.......
T Consensus 874 ~-~~~~~~h~~~v~~v~~spdg~-~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 951 (1249)
T 3sfz_A 874 K-VADCRGHLSWVHGVMFSPDGS-SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAG 951 (1249)
T ss_dssp E-EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEE
T ss_pred e-eeecCCCccceEEEEECCCCC-EEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEec
Confidence 4 788899999999999999997 69999999999999965310000
Q ss_pred ------------------------ccccccC--------CCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEE
Q 015484 340 ------------------------LELDAED--------GPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387 (406)
Q Consensus 340 ------------------------~~~~~~~--------~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw 387 (406)
......+ ..........+|...|.+++|+|+++ .+++++.||.|++|
T Consensus 952 ~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~~dg~i~vw 1030 (1249)
T 3sfz_A 952 KTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGK-TLISSSEDSVIQVW 1030 (1249)
T ss_dssp SSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSS-CEEEECSSSBEEEE
T ss_pred CcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCC-EEEEEcCCCEEEEE
Confidence 0000000 11234455668999999999999999 58899999999999
Q ss_pred eCCCccc
Q 015484 388 QMTDSIY 394 (406)
Q Consensus 388 ~~~~~~~ 394 (406)
++.++..
T Consensus 1031 d~~~~~~ 1037 (1249)
T 3sfz_A 1031 NWQTGDY 1037 (1249)
T ss_dssp ETTTTEE
T ss_pred ECCCCce
Confidence 9988754
No 95
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-31 Score=267.85 Aligned_cols=261 Identities=13% Similarity=0.139 Sum_probs=198.4
Q ss_pred eEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEe
Q 015484 106 VEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSG 185 (406)
Q Consensus 106 ~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 185 (406)
+......+|.+.|++++|+|++ .+||+|+.||+|+||+..... ......|...|.+++|+| +. +|+++
T Consensus 8 ~~~~~~~gh~~~V~~lafspdg-~~lAsgs~Dg~I~lw~~~~~~---------~~~~~~~~~~V~~l~fsp-g~-~L~S~ 75 (902)
T 2oaj_A 8 LAETNKYGMSSKPIAAAFDFTQ-NLLAIATVTGEVHIYGQQQVE---------VVIKLEDRSAIKEMRFVK-GI-YLVVI 75 (902)
T ss_dssp EEEEEEEECSSCEEEEEEETTT-TEEEEEETTSEEEEECSTTCE---------EEEECSSCCCEEEEEEET-TT-EEEEE
T ss_pred eccccccCCCCCcEEEEECCCC-CEEEEEeCCCEEEEEeCCCcE---------EEEEcCCCCCEEEEEEcC-CC-EEEEE
Confidence 4456677999999999999999 689999999999999987621 122235788999999999 77 99999
Q ss_pred cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccc-----------ccc
Q 015484 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ-----------QRV 254 (406)
Q Consensus 186 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~-----------~~~ 254 (406)
+.|++|++||+.+++. +..+. |...|++++|+| ++.++++|+.||.|++||+++++.. ..+
T Consensus 76 s~D~~v~lWd~~~~~~------~~~~~-~~~~V~~v~~sp-~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~ 147 (902)
T 2oaj_A 76 NAKDTVYVLSLYSQKV------LTTVF-VPGKITSIDTDA-SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFP 147 (902)
T ss_dssp ETTCEEEEEETTTCSE------EEEEE-CSSCEEEEECCT-TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCS
T ss_pred ECcCeEEEEECCCCcE------EEEEc-CCCCEEEEEECC-CCCEEEEEcCCCcEEEEECCCCccccceecccccccccc
Confidence 9999999999988642 23333 667899999999 7889999999999999999987653 334
Q ss_pred cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCC------------------CCCeEEEEEcCCCCC
Q 015484 255 KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSH------------------TEEVFQVEWDPNHET 316 (406)
Q Consensus 255 ~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h------------------~~~v~~i~~~p~~~~ 316 (406)
.+|...|++++|+|++...|++|+.||.| +||+++... +..+..| ...|++++|+|++.
T Consensus 148 ~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~- 224 (902)
T 2oaj_A 148 AARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEI-KQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL- 224 (902)
T ss_dssp SSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEE-EEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS-
T ss_pred ccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCce-EEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC-
Confidence 67889999999999765589999999999 999998543 5555544 57899999999997
Q ss_pred EEEEEeCCCcEEEEeCCCCCcccc-cccc-c-CCCC-eeEEEecCCCCCeeeEEeC----CCCCcEEEEEeCC-----Cc
Q 015484 317 VLASSADDRRLMVWDLNRIGDEQL-ELDA-E-DGPP-ELLFSHGGHKAKISDFSWN----KNDPWVISSVADD-----NT 383 (406)
Q Consensus 317 ~l~s~~~dg~i~iwd~~~~~~~~~-~~~~-~-~~~~-~~~~~~~~h~~~v~~~~~s----~~~~~~l~s~~~d-----g~ 383 (406)
+|++++.||.|++||+++...... .... . ..+. ........|...|++++|+ |++..++++|+.| ..
T Consensus 225 ~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~ 304 (902)
T 2oaj_A 225 HIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQS 304 (902)
T ss_dssp EEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCC
T ss_pred EEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCce
Confidence 699999999999999987332111 0000 0 0000 0000000245679999995 5544578888776 37
Q ss_pred EEEEeC
Q 015484 384 VQVWQM 389 (406)
Q Consensus 384 i~iw~~ 389 (406)
+++|++
T Consensus 305 v~~~~~ 310 (902)
T 2oaj_A 305 LTMIDL 310 (902)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 888885
No 96
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.2e-30 Score=254.95 Aligned_cols=255 Identities=15% Similarity=0.212 Sum_probs=210.9
Q ss_pred EEEeecCCc-eeEEEEcC--CCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEe
Q 015484 109 AQKIRVDGE-VNRARCMP--QKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSG 185 (406)
Q Consensus 109 ~~~~~h~~~-v~~i~~~p--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 185 (406)
....+|.+. |++++|+| ++ .+||+|+.||.|+||++................+..|...|.+++|+|++. +|+++
T Consensus 57 ~~~~~h~~~~v~~~~~sp~~~~-~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~ 134 (615)
T 1pgu_A 57 VQFTGHGSSVVTTVKFSPIKGS-QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR-RLCVV 134 (615)
T ss_dssp EEECTTTTSCEEEEEECSSTTC-CEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS-EEEEE
T ss_pred eEEecCCCceEEEEEECcCCCC-CEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC-EEEEe
Confidence 445579999 99999999 88 689999999999999997531000001233567788999999999999998 99999
Q ss_pred cCC----CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCC--
Q 015484 186 SHD----NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEK-- 259 (406)
Q Consensus 186 ~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-- 259 (406)
+.+ +.|.+||... .+..+..|...|.+++|+|++..++++++.||.|++||+++++.+..+..|..
T Consensus 135 ~~~~~~~~~v~~~d~~~--------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~ 206 (615)
T 1pgu_A 135 GEGRDNFGVFISWDSGN--------SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQG 206 (615)
T ss_dssp ECCSSCSEEEEETTTCC--------EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTT
T ss_pred ccCCCCccEEEEEECCC--------cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCC
Confidence 887 7899998322 23566789999999999996555899999999999999999998888888988
Q ss_pred -CeeEEEecCC-CCcEEEEEeCCCcEEEEeCCCCCCCcEEe-c---CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 015484 260 -EVNYLSFNPY-NEWVLATASSDTTVALFDMRKMTVPLHIL-S---SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLN 333 (406)
Q Consensus 260 -~v~~i~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~---~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~ 333 (406)
.|.+++|+|+ +. +|++++.||.|++||+++.+. +..+ . .|...|.+++|+ +++ +|++++.||.|++||++
T Consensus 207 ~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~~wd~~ 282 (615)
T 1pgu_A 207 SFVRDVEFSPDSGE-FVITVGSDRKISCFDGKSGEF-LKYIEDDQEPVQGGIFALSWL-DSQ-KFATVGADATIRVWDVT 282 (615)
T ss_dssp CCEEEEEECSTTCC-EEEEEETTCCEEEEETTTCCE-EEECCBTTBCCCSCEEEEEES-SSS-EEEEEETTSEEEEEETT
T ss_pred ceEEEEEECCCCCC-EEEEEeCCCeEEEEECCCCCE-eEEecccccccCCceEEEEEc-CCC-EEEEEcCCCcEEEEECC
Confidence 9999999999 87 999999999999999998664 6666 5 899999999999 776 79999999999999998
Q ss_pred CCCcccccccccCCCCeeEEEecCC----CCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 334 RIGDEQLELDAEDGPPELLFSHGGH----KAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
. ...+..+..+ ...+.++.|. ++. .+++++.||.|++|++.++.
T Consensus 283 ~--------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~~~~~~g~i~~~d~~~~~ 330 (615)
T 1pgu_A 283 T--------------SKCVQKWTLDKQQLGNQQVGVVAT-GNG-RIISLSLDGTLNFYELGHDE 330 (615)
T ss_dssp T--------------TEEEEEEECCTTCGGGCEEEEEEE-ETT-EEEEEETTSCEEEEETTEEE
T ss_pred C--------------CcEEEEEcCCCCcccCceeEEEeC-CCC-eEEEEECCCCEEEEECCCCc
Confidence 6 2444444444 4678888886 666 68999999999999998753
No 97
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.1e-30 Score=242.84 Aligned_cols=235 Identities=17% Similarity=0.348 Sum_probs=201.5
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeE
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKI 191 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 191 (406)
.+|...|.++++ ++ .+|++|+.||.|++||+.+. .....+.+|...|.+++| ++. +|++|+.||+|
T Consensus 130 ~~~~~~v~~~~~--d~-~~l~~g~~dg~i~iwd~~~~--------~~~~~~~~h~~~v~~l~~--~~~-~l~sg~~dg~i 195 (435)
T 1p22_A 130 SETSKGVYCLQY--DD-QKIVSGLRDNTIKIWDKNTL--------ECKRILTGHTGSVLCLQY--DER-VIITGSSDSTV 195 (435)
T ss_dssp CSSCCCEEEEEC--CS-SEEEEEESSSCEEEEESSSC--------CEEEEECCCSSCEEEEEC--CSS-EEEEEETTSCE
T ss_pred cCCCCcEEEEEE--CC-CEEEEEeCCCeEEEEeCCCC--------eEEEEEcCCCCcEEEEEE--CCC-EEEEEcCCCeE
Confidence 356778999887 45 68999999999999999873 446778899999999999 466 99999999999
Q ss_pred EEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccc---ccccccCCCeeEEEecC
Q 015484 192 CLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ---QRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 192 ~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~v~~i~~~~ 268 (406)
++||+.++.. +..+..|...|.+++|++ ..+++|+.||.|++||++++... ..+.+|...|.+++|
T Consensus 196 ~vwd~~~~~~------~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-- 264 (435)
T 1p22_A 196 RVWDVNTGEM------LNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-- 264 (435)
T ss_dssp EEEESSSCCE------EEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--
T ss_pred EEEECCCCcE------EEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--
Confidence 9999988642 356678999999999974 58999999999999999988765 556789999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGP 348 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 348 (406)
++. ++++|+.||.|++||+++... +..+..|...|.++.|+ ++ ++++|+.||.|++||+++
T Consensus 265 ~~~-~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~--~~-~l~~g~~dg~i~iwd~~~-------------- 325 (435)
T 1p22_A 265 DDK-YIVSASGDRTIKVWNTSTCEF-VRTLNGHKRGIACLQYR--DR-LVVSGSSDNTIRLWDIEC-------------- 325 (435)
T ss_dssp ETT-EEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEEE--TT-EEEEEETTSCEEEEETTT--------------
T ss_pred CCC-EEEEEeCCCeEEEEECCcCcE-EEEEcCCCCcEEEEEeC--CC-EEEEEeCCCeEEEEECCC--------------
Confidence 455 899999999999999998654 88889999999999995 33 699999999999999986
Q ss_pred CeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 349 PELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 349 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
...+..+.+|...|.+++| ++. +|++|+.||.|++||+.++.
T Consensus 326 ~~~~~~~~~h~~~v~~~~~--~~~-~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 326 GACLRVLEGHEELVRCIRF--DNK-RIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp CCEEEEECCCSSCEEEEEC--CSS-EEEEEETTSCEEEEEHHHHT
T ss_pred CCEEEEEeCCcCcEEEEEe--cCC-EEEEEeCCCcEEEEECCCCC
Confidence 3566778899999999999 455 79999999999999986654
No 98
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=7.2e-31 Score=237.37 Aligned_cols=218 Identities=23% Similarity=0.337 Sum_probs=189.9
Q ss_pred CceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC
Q 015484 158 PDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD 237 (406)
Q Consensus 158 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d 237 (406)
...+|++|.+.|++|+|+|++..+|+||+.||+|++||+.+...... .+...+.+|...|.+++|+| ++.+|++++.|
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~-~~~~~l~~h~~~V~~~~~s~-dg~~l~s~~~d 107 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG-IPQRALRGHSHFVSDVVISS-DGQFALSGSWD 107 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE-EEEEEECCCSSCEEEEEECT-TSSEEEEEETT
T ss_pred EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc-eeeEEEeCCCCCEEEEEECC-CCCEEEEEccc
Confidence 35578999999999999998655999999999999999987654322 24466788999999999999 78999999999
Q ss_pred CcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCC-C
Q 015484 238 CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHE-T 316 (406)
Q Consensus 238 g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~-~ 316 (406)
+.|++|+............+...+..+.+++.+. +|++++.|+.+++||++...........|...+..++|++++. .
T Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 186 (340)
T 4aow_A 108 GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNP 186 (340)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSC
T ss_pred ccceEEeecccceeeeecCCCCceeEEEEeecCc-cceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCc
Confidence 9999999998888777777888899999999988 8999999999999999876655556778999999999998754 3
Q ss_pred EEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 317 VLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 317 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
++++++.|+.|++||++. ..++..+.+|...|++++|+|+++ +|++++.||.|++||+.+..
T Consensus 187 ~~~s~~~d~~i~i~d~~~--------------~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~Dg~i~iwd~~~~~ 248 (340)
T 4aow_A 187 IIVSCGWDKLVKVWNLAN--------------CKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLWDLNEGK 248 (340)
T ss_dssp EEEEEETTSCEEEEETTT--------------TEEEEEECCCSSCEEEEEECTTSS-EEEEEETTCEEEEEETTTTE
T ss_pred EEEEEcCCCEEEEEECCC--------------CceeeEecCCCCcEEEEEECCCCC-EEEEEeCCCeEEEEEeccCc
Confidence 678999999999999986 466777889999999999999999 79999999999999998764
No 99
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-30 Score=244.23 Aligned_cols=260 Identities=13% Similarity=0.101 Sum_probs=191.8
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcc---cccc--CC----------------------------------
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQA---EKQQ--DD---------------------------------- 155 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~---~~~~--~~---------------------------------- 155 (406)
..++.+++|+|++. +|+++ .++.|++||+.++. .... ..
T Consensus 4 ~~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 4 IHPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp ECCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred cccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 35789999999995 55554 57899999987754 1000 00
Q ss_pred ----------CCCceeeeCCCCCeeEEEecCCCCCeE-EEecCCCeEEEEeCC--CccCCceeeeeeeee--ccCccEEE
Q 015484 156 ----------CDPDLRLKGHDKEGYGLSWSPFKEGYL-VSGSHDNKICLWDVS--ALAQDKVIDAMHVYE--AHESVVED 220 (406)
Q Consensus 156 ----------~~~~~~~~~h~~~v~~l~~~~~~~~~l-~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~--~~~~~i~~ 220 (406)
..+.....+|...|.+++|+|++. +| ++|+.||.|++||+. ++... ..+. .|...|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~~dg~v~iwd~~~~~~~~~------~~~~~~~~~~~v~~ 154 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDES-RLIACADSDKSLLVFDVDKTSKNVL------KLRKRFCFSKRPNA 154 (450)
T ss_dssp ------------------CCCCCEEEEEECTTSS-EEEEEEGGGTEEEEEEECSSSSSCE------EEEEEEECSSCEEE
T ss_pred ccccccCccccCCCCCCCccCCceEEEEEcCCCC-EEEEEECCCCeEEEEECcCCCCcee------eeeecccCCCCceE
Confidence 001112235666899999999998 75 899999999999998 54332 2232 56788999
Q ss_pred EEeeCCCCCEEEEEecCCcEEEEECCCCcccc----cccccCCCeeEEEecCC---CCcEEEEEeCCCcEEEEeCCCCCC
Q 015484 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ----RVKAHEKEVNYLSFNPY---NEWVLATASSDTTVALFDMRKMTV 293 (406)
Q Consensus 221 i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~v~~i~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~ 293 (406)
++|+| ++.+|++++.+|.+++|++.+++... .+.+|...|++++|+|+ +. +|++|+.|+.|++||+++...
T Consensus 155 ~~~sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~d~~i~vwd~~~~~~ 232 (450)
T 2vdu_B 155 ISIAE-DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ-FIITSDRDEHIKISHYPQCFI 232 (450)
T ss_dssp EEECT-TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCE-EEEEEETTSCEEEEEESCTTC
T ss_pred EEEcC-CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCc-EEEEEcCCCcEEEEECCCCce
Confidence 99999 67899999999999999999877654 67889999999999999 77 999999999999999998665
Q ss_pred CcEE-ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccccccc----------CCCCe-eEEEecCCCCC
Q 015484 294 PLHI-LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAE----------DGPPE-LLFSHGGHKAK 361 (406)
Q Consensus 294 ~~~~-~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----------~~~~~-~~~~~~~h~~~ 361 (406)
+.. +.+|...|.+++|+ +++ +|++++.|+.|++||+............. ..+.. ...........
T Consensus 233 -~~~~~~~h~~~v~~~~~s-d~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (450)
T 2vdu_B 233 -VDKWLFGHKHFVSSICCG-KDY-LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA 309 (450)
T ss_dssp -EEEECCCCSSCEEEEEEC-STT-EEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred -eeeeecCCCCceEEEEEC-CCC-EEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence 444 66899999999999 876 79999999999999998743211110000 00000 00000123457
Q ss_pred eeeEEeCCCCCcEEEEEe-CCCcEEEEeC
Q 015484 362 ISDFSWNKNDPWVISSVA-DDNTVQVWQM 389 (406)
Q Consensus 362 v~~~~~s~~~~~~l~s~~-~dg~i~iw~~ 389 (406)
|.+++|+|++++ +++++ .|+.|+||++
T Consensus 310 v~~i~~~~~~~~-l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 310 VSKIIKSKNLPF-VAFFVEATKCIIILEM 337 (450)
T ss_dssp EEEEEECSSSSE-EEEEETTCSEEEEEEE
T ss_pred EEEEEEeCCCCE-EEEEECCCCeEEEEEe
Confidence 999999999995 66666 8999999999
No 100
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=6.1e-30 Score=237.00 Aligned_cols=308 Identities=17% Similarity=0.198 Sum_probs=203.7
Q ss_pred HhhhhhhcChhHhhhhhcCCCCCCceEEEEec-CCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCC
Q 015484 16 EFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVP-SPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNV 94 (406)
Q Consensus 16 ~~~~wk~~~~~ly~~~~~~~~~~p~~~~~~~p-~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~ 94 (406)
..++|..........+..|. -+..++.|.| +. ..++.|+. ++.|.++++.-. ...
T Consensus 24 ~~~v~~~~~~~~~~~~~~h~--~~v~~~~~s~~~~------------~~l~~~~~-----dg~i~iw~~~~~---~~~-- 79 (408)
T 4a11_B 24 TRRVLGLELNKDRDVERIHG--GGINTLDIEPVEG------------RYMLSGGS-----DGVIVLYDLENS---SRQ-- 79 (408)
T ss_dssp HHHHHTEEECTTEEECCCCS--SCEEEEEECTTTC------------CEEEEEET-----TSCEEEEECCCC---SSS--
T ss_pred cceeeccccCcceeeeeccC--CcEEEEEEecCCC------------CEEEEEcC-----CCeEEEEECCCC---ccc--
Confidence 45667665544444444444 3788999987 31 25666654 367888876522 000
Q ss_pred CCCCCCCCCCCeEE--EEE------eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCC
Q 015484 95 GGKNENPVIPKVEI--AQK------IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHD 166 (406)
Q Consensus 95 ~~~~~~~~~~~~~~--~~~------~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~ 166 (406)
..+.. ... .+|.+.|.+++|+|++..+|++++.||.|++||+..... ...+ .+.
T Consensus 80 ---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--------~~~~-~~~ 141 (408)
T 4a11_B 80 ---------SYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT--------ADVF-NFE 141 (408)
T ss_dssp ---------SCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE--------EEEE-ECS
T ss_pred ---------ceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc--------ceec-cCC
Confidence 11111 111 149999999999996657899999999999999987422 3333 377
Q ss_pred CCeeEEEecCCCC--CeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEE
Q 015484 167 KEGYGLSWSPFKE--GYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWD 244 (406)
Q Consensus 167 ~~v~~l~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d 244 (406)
..+.++.|++.+. .++++|+.||.|++||+.++.. +..+..|...|.+++|+|.+..+|++++.||.|++||
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~------~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d 215 (408)
T 4a11_B 142 ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC------SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWD 215 (408)
T ss_dssp SCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC------CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred CceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce------eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEE
Confidence 8899999998543 2899999999999999987643 3456678999999999996666899999999999999
Q ss_pred CCCCcc-ccc---------------ccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC----------------
Q 015484 245 LRTNQT-QQR---------------VKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT---------------- 292 (406)
Q Consensus 245 ~~~~~~-~~~---------------~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~---------------- 292 (406)
++.+.. ... ...|...|.+++|+|++. +|++++.||.|++||+++..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 294 (408)
T 4a11_B 216 VRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL-HLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKG 294 (408)
T ss_dssp TTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSC
T ss_pred CCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC-EEEEecCCCeEEEEECCCCccceecccccccccccc
Confidence 987652 222 256889999999999998 99999999999999998643
Q ss_pred ------------------------------CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccc
Q 015484 293 ------------------------------VPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLEL 342 (406)
Q Consensus 293 ------------------------------~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 342 (406)
.++..+.+|...|.+++|+|+++ +|++++.||.|++||+.....
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~----- 368 (408)
T 4a11_B 295 LKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQ-ELYSGSRDCNILAWVPSLYEP----- 368 (408)
T ss_dssp CCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEEECC--------
T ss_pred ceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCC-EEEEECCCCeEEEEeCCCCCc-----
Confidence 12455677999999999999997 699999999999999987322
Q ss_pred cccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 343 DAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 343 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
+.....+ -....+.+.....+.+.+.|+.+++|+..
T Consensus 369 ---------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 369 ---------VPDDDET---TTKSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ------------------------------------------------
T ss_pred ---------cCCCCce---EeccccccccceeecccCccCceeecCCc
Confidence 1111111 11233444333356677889999999765
No 101
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.1e-29 Score=236.86 Aligned_cols=243 Identities=20% Similarity=0.374 Sum_probs=199.6
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeC
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV 196 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 196 (406)
.++.|+|++++ +||+|. |++|+|||..++.. .....+.+|...|++|+|+|+|. +|++|+.||+|++||+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~------~~~~~~~~~~~~V~sv~fspdg~-~lasgs~Dg~v~iWd~ 176 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDI------LQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLWDV 176 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCE------EEEEECCSTTCCEEEEEECTTSS-EEEEEETTSCEEEEET
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCE------EEEEEecCCCCcEEEEEECCCCC-EEEEEECCCeEEEEEc
Confidence 46889999754 788775 89999999988422 22344557888999999999998 9999999999999999
Q ss_pred CCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc-cccccccCCCeeEEEecCCCCcEEE
Q 015484 197 SALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT-QQRVKAHEKEVNYLSFNPYNEWVLA 275 (406)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~l~ 275 (406)
.+++ .+..+.+|...+.++.++ +.++++|+.|+.+++||.+.... +..+.+|...+..+.|+|++. +++
T Consensus 177 ~~~~------~~~~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~-~l~ 246 (420)
T 4gga_A 177 QQQK------RLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLA 246 (420)
T ss_dssp TTTE------EEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEE
T ss_pred CCCc------EEEEEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCC-eee
Confidence 8864 346677899999999886 57899999999999999987544 566788999999999999999 999
Q ss_pred EEeCCCcEEEEeCCCCC---CCcEEecCCCCCeEEEEEcCCCCCEEEEE--eCCCcEEEEeCCCCCcccccccccCCCCe
Q 015484 276 TASSDTTVALFDMRKMT---VPLHILSSHTEEVFQVEWDPNHETVLASS--ADDRRLMVWDLNRIGDEQLELDAEDGPPE 350 (406)
Q Consensus 276 ~~~~dg~i~vwd~~~~~---~~~~~~~~h~~~v~~i~~~p~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 350 (406)
+++.|+.+++||.+... ..+.....|...|.+++|+|.+..+++++ +.|++|++||+.+ ..
T Consensus 247 s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t--------------~~ 312 (420)
T 4gga_A 247 SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS--------------GA 312 (420)
T ss_dssp EEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT--------------TE
T ss_pred eeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc--------------cc
Confidence 99999999999998754 34677888999999999999988887765 4799999999987 34
Q ss_pred eEEEecCCCCCeeeEEeCCCCCcEEEEE-eCCCcEEEEeCCCccc
Q 015484 351 LLFSHGGHKAKISDFSWNKNDPWVISSV-ADDNTVQVWQMTDSIY 394 (406)
Q Consensus 351 ~~~~~~~h~~~v~~~~~s~~~~~~l~s~-~~dg~i~iw~~~~~~~ 394 (406)
++.....| ..+.++.|+|++..+++++ +.|+.|+|||+.++..
T Consensus 313 ~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~ 356 (420)
T 4gga_A 313 CLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK 356 (420)
T ss_dssp EEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE
T ss_pred cceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcE
Confidence 45555544 5699999999999544433 3799999999987643
No 102
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.6e-29 Score=237.62 Aligned_cols=238 Identities=21% Similarity=0.390 Sum_probs=203.8
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
...+|.+.|.+++|++ .++++|+.||+|++||+.+. .....+.+|...|.+++|+ +. .|++|+.||
T Consensus 154 ~~~~h~~~v~~~~~~~---~~l~s~~~dg~i~vwd~~~~--------~~~~~~~~h~~~v~~~~~~--~~-~l~s~s~dg 219 (445)
T 2ovr_B 154 TLVGHTGGVWSSQMRD---NIIISGSTDRTLKVWNAETG--------ECIHTLYGHTSTVRCMHLH--EK-RVVSGSRDA 219 (445)
T ss_dssp ECCCCSSCEEEEEEET---TEEEEEETTSCEEEEETTTT--------EEEEEECCCSSCEEEEEEE--TT-EEEEEETTS
T ss_pred EEcCCCCCEEEEEecC---CEEEEEeCCCeEEEEECCcC--------cEEEEECCCCCcEEEEEec--CC-EEEEEeCCC
Confidence 3447999999999983 58999999999999999874 3367788999999999996 44 899999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~ 269 (406)
+|++||+.+++ .+..+..|...|.+++| ++.++++++.||.|++||+++++.+..+..|...|.+++| +
T Consensus 220 ~i~~wd~~~~~------~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~ 288 (445)
T 2ovr_B 220 TLRVWDIETGQ------CLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--D 288 (445)
T ss_dssp EEEEEESSSCC------EEEEEECCSSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--C
T ss_pred EEEEEECCCCc------EEEEEcCCcccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--C
Confidence 99999998764 23556789999999999 3677889999999999999999998889899999999999 4
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCC
Q 015484 270 NEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (406)
+. .+++|+.||.|++||++++.. +..+..|...+.++.+++ + ++++++.||.|++||+++ .
T Consensus 289 ~~-~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~--~-~l~~~~~dg~i~vwd~~~--------------~ 349 (445)
T 2ovr_B 289 GI-HVVSGSLDTSIRVWDVETGNC-IHTLTGHQSLTSGMELKD--N-ILVSGNADSTVKIWDIKT--------------G 349 (445)
T ss_dssp SS-EEEEEETTSCEEEEETTTCCE-EEEECCCCSCEEEEEEET--T-EEEEEETTSCEEEEETTT--------------C
T ss_pred CC-EEEEEeCCCeEEEEECCCCCE-EEEEcCCcccEEEEEEeC--C-EEEEEeCCCeEEEEECCC--------------C
Confidence 66 899999999999999998664 788899999999998863 3 699999999999999976 2
Q ss_pred eeEEEecC---CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 350 ELLFSHGG---HKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 350 ~~~~~~~~---h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
..+..+.+ |...|.+++|++ . ++++++.||.|++|++.++..
T Consensus 350 ~~~~~~~~~~~~~~~v~~~~~~~--~-~l~s~~~dg~v~iwd~~~~~~ 394 (445)
T 2ovr_B 350 QCLQTLQGPNKHQSAVTCLQFNK--N-FVITSSDDGTVKLWDLKTGEF 394 (445)
T ss_dssp CEEEEECSTTSCSSCEEEEEECS--S-EEEEEETTSEEEEEETTTCCE
T ss_pred cEEEEEccCCCCCCCEEEEEECC--C-EEEEEeCCCeEEEEECCCCce
Confidence 34445554 888999999974 4 799999999999999998754
No 103
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=5.7e-30 Score=240.96 Aligned_cols=250 Identities=12% Similarity=0.121 Sum_probs=198.3
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCC--CccccccCCCCCceeee--CCCCCeeEEEecCCCCCeEEEecCC
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCA--KQAEKQQDDCDPDLRLK--GHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
+|.+.|++++|+|++..++++|+.||.|+||++. .. .....+. .|...|.+++|+|++. +|++|+.+
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~--------~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~~ 170 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK--------NVLKLRKRFCFSKRPNAISIAEDDT-TVIIADKF 170 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS--------SCEEEEEEEECSSCEEEEEECTTSS-EEEEEETT
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC--------ceeeeeecccCCCCceEEEEcCCCC-EEEEEeCC
Confidence 5778899999999996556999999999999998 42 2344454 6778999999999998 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCC--CCCEEEEEecCCcEEEEECCCCccccc-ccccCCCeeEEE
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLK--NENLFGSAGDDCQLMIWDLRTNQTQQR-VKAHEKEVNYLS 265 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~--~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~i~ 265 (406)
|.|++|++........ +...+.+|...|.+++|+|+ ++.+|++++.|+.|++||+++++.+.. +.+|...|.+++
T Consensus 171 g~v~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~ 248 (450)
T 2vdu_B 171 GDVYSIDINSIPEEKF--TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSIC 248 (450)
T ss_dssp SEEEEEETTSCCCSSC--CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEE
T ss_pred CcEEEEecCCcccccc--cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEE
Confidence 9999999987654320 22355678999999999993 178999999999999999999888776 568999999999
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec-------------------------CCCCCeEEEEEcCCCCCEEEE
Q 015484 266 FNPYNEWVLATASSDTTVALFDMRKMTVPLHILS-------------------------SHTEEVFQVEWDPNHETVLAS 320 (406)
Q Consensus 266 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------------------------~h~~~v~~i~~~p~~~~~l~s 320 (406)
|+ ++. +|++++.|+.|++||++++.. +..+. .....|.+++|+|+++ +|++
T Consensus 249 ~s-d~~-~l~s~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~ 324 (450)
T 2vdu_B 249 CG-KDY-LLLSAGGDDKIFAWDWKTGKN-LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP-FVAF 324 (450)
T ss_dssp EC-STT-EEEEEESSSEEEEEETTTCCE-EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS-EEEE
T ss_pred EC-CCC-EEEEEeCCCeEEEEECCCCcE-eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC-EEEE
Confidence 99 888 999999999999999998664 44443 2345799999999997 4667
Q ss_pred Ee-CCCcEEEEeC--CCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeC-------CCcEEEEeCC
Q 015484 321 SA-DDRRLMVWDL--NRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVAD-------DNTVQVWQMT 390 (406)
Q Consensus 321 ~~-~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~-------dg~i~iw~~~ 390 (406)
++ .|+.|+||++ .... ....+..+.+| ..|.+++|+|++ ++++++. ++.|.+|.+.
T Consensus 325 ~~~~d~~i~iw~~~~~~~~-----------~l~~~~~~~~~-~~v~~~~~~~~~--~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 325 FVEATKCIIILEMSEKQKG-----------DLALKQIITFP-YNVISLSAHNDE--FQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp EETTCSEEEEEEECSSSTT-----------CEEEEEEEECS-SCEEEEEEETTE--EEEEECCTTCCSSCCCSEEEEEEE
T ss_pred EECCCCeEEEEEeccCCCC-----------ceeeccEeccC-CceEEEEecCCc--EEEEEecccCCCCCCcceEEEEEE
Confidence 76 8999999999 3211 12455666677 789999999954 4445433 5568888765
Q ss_pred C
Q 015484 391 D 391 (406)
Q Consensus 391 ~ 391 (406)
.
T Consensus 391 ~ 391 (450)
T 2vdu_B 391 L 391 (450)
T ss_dssp T
T ss_pred c
Confidence 3
No 104
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.4e-30 Score=237.32 Aligned_cols=216 Identities=20% Similarity=0.352 Sum_probs=184.8
Q ss_pred ceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCC-CCCEEEEEecC
Q 015484 159 DLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLK-NENLFGSAGDD 237 (406)
Q Consensus 159 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~-~~~~l~~~~~d 237 (406)
...+.+|...|++++|+|++. +|++|+.||.|++||+.... ......+..|...|.+++|+|. ++.+|++++.|
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d 78 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGET----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 78 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTE----EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred cEEecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCc----ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC
Confidence 567889999999999999998 99999999999999997422 2344667789999999999863 27899999999
Q ss_pred CcEEEEECCCCc--ccccccccCCCeeEEEecCC--CCcEEEEEeCCCcEEEEeCCCCCC-CcEEecCCCCCeEEEEEcC
Q 015484 238 CQLMIWDLRTNQ--TQQRVKAHEKEVNYLSFNPY--NEWVLATASSDTTVALFDMRKMTV-PLHILSSHTEEVFQVEWDP 312 (406)
Q Consensus 238 g~i~i~d~~~~~--~~~~~~~~~~~v~~i~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~i~~~p 312 (406)
|.|++||+++++ .+..+..|...|.+++|+|+ +. +|++++.||.|++||++.... ....+..|...|.+++|+|
T Consensus 79 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 157 (379)
T 3jrp_A 79 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 157 (379)
T ss_dssp SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECC
T ss_pred CEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcC
Confidence 999999999886 56667789999999999999 77 999999999999999998643 3456778999999999999
Q ss_pred -------------CCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCC---CCcEEE
Q 015484 313 -------------NHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKN---DPWVIS 376 (406)
Q Consensus 313 -------------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~---~~~~l~ 376 (406)
++. +|++++.||.|++||++.... ...+...+.+|...|.+++|+|+ +. +|+
T Consensus 158 ~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~ 225 (379)
T 3jrp_A 158 ATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQ----------TYVLESTLEGHSDWVRDVAWSPTVLLRS-YLA 225 (379)
T ss_dssp CC----------CTTC-EEEEEETTSCEEEEEEETTTT----------EEEEEEEECCCSSCEEEEEECCCCSSSE-EEE
T ss_pred ccccccccccCCCCCC-EEEEEeCCCeEEEEEecCCCc----------ceeeEEEEecccCcEeEEEECCCCCCCC-eEE
Confidence 465 799999999999999976322 12455677889999999999999 66 799
Q ss_pred EEeCCCcEEEEeCCCc
Q 015484 377 SVADDNTVQVWQMTDS 392 (406)
Q Consensus 377 s~~~dg~i~iw~~~~~ 392 (406)
+++.||.|++|++.++
T Consensus 226 s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 226 SVSQDRTCIIWTQDNE 241 (379)
T ss_dssp EEETTSCEEEEEESST
T ss_pred EEeCCCEEEEEeCCCC
Confidence 9999999999999875
No 105
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.98 E-value=1.1e-29 Score=231.44 Aligned_cols=238 Identities=11% Similarity=0.139 Sum_probs=181.6
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
...|.+.|++++|+|++ .+||+|+.+| ++||+...... .... +...+..+++.+.++..+++|+.|++
T Consensus 15 ~~~h~~~V~~v~fs~dg-~~la~g~~~~-~~iw~~~~~~~--------~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQ-SCLILSTLKS-FEIYNVHPVAH--------IMSQ--EMRHLSKVRMLHRTNYVAFVTGVKEV 82 (355)
T ss_dssp ----CCCCCEEEECTTS-SEEEEECSSE-EEEEEETTEEE--------EEEE--ECSCCCEEEECTTSSEEEEECSSTTE
T ss_pred cccCCCceEEEEECCCC-CEEEEEcCCE-EEEEecCCcce--------eeee--ecCCeEEEEEcCCCCEEEEEECCccE
Confidence 35699999999999999 6888888775 78999876321 1222 22347788888877734467888999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC-cccccccccCCCeeEEEecCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN-QTQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~~ 269 (406)
|++||+.+++. +..+. +...|.+++|++ ..++++ .++.|++||+.++ +.+..+.. +...+++++
T Consensus 83 v~iWd~~~~~~------~~~~~-~~~~v~~v~~~~---~~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~- 147 (355)
T 3vu4_A 83 VHIWDDVKKQD------VSRIK-VDAPVKDLFLSR---EFIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN- 147 (355)
T ss_dssp EEEEETTTTEE------EEEEE-CSSCEEEEEECS---SEEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET-
T ss_pred EEEEECCCCcE------EEEEE-CCCceEEEEEcC---CEEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc-
Confidence 99999988643 23333 567899999986 234333 4789999999988 66666654 444556666
Q ss_pred CCcEEEE--EeCCCcEEEEeCCCCC--------------CC-cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCc-EEEEe
Q 015484 270 NEWVLAT--ASSDTTVALFDMRKMT--------------VP-LHILSSHTEEVFQVEWDPNHETVLASSADDRR-LMVWD 331 (406)
Q Consensus 270 ~~~~l~~--~~~dg~i~vwd~~~~~--------------~~-~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~-i~iwd 331 (406)
. ++++ |+.||.|++||+++.. .| +..+.+|...|++++|+|+++ +|++|+.||+ |+|||
T Consensus 148 -~-~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~-~l~s~s~d~~~v~iwd 224 (355)
T 3vu4_A 148 -G-LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD-MVATCSQDGTIIRVFK 224 (355)
T ss_dssp -T-EEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSS-EEEEEETTCSEEEEEE
T ss_pred -c-EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC-EEEEEeCCCCEEEEEE
Confidence 3 5555 6889999999999754 12 678899999999999999997 7999999998 99999
Q ss_pred CCCCCcccccccccCCCCeeEEEec-C-CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 332 LNRIGDEQLELDAEDGPPELLFSHG-G-HKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
+++ ...+..+. + |...|.+++|+|+++ +|++++.|+.|+||++..+.
T Consensus 225 ~~~--------------~~~~~~~~~g~h~~~v~~~~~s~~~~-~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 225 TED--------------GVLVREFRRGLDRADVVDMKWSTDGS-KLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp TTT--------------CCEEEEEECTTCCSCEEEEEECTTSC-EEEEEETTCEEEEEESSCCS
T ss_pred CCC--------------CcEEEEEEcCCCCCcEEEEEECCCCC-EEEEEECCCEEEEEEccCCC
Confidence 986 34555665 5 999999999999999 69999999999999998764
No 106
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.4e-31 Score=240.32 Aligned_cols=239 Identities=9% Similarity=0.044 Sum_probs=179.1
Q ss_pred cCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCc
Q 015484 124 MPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDK 203 (406)
Q Consensus 124 ~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 203 (406)
.+++ .+|++|+.||.|++||+.+. +....+. ...|.++.|+|. +++++.|++|++|+........
T Consensus 45 ~~d~-~~l~sg~~Dg~v~iwd~~~~--------~~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~ 109 (343)
T 3lrv_A 45 YYDK-WVCMCRCEDGALHFTQLKDS--------KTITTIT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITIL 109 (343)
T ss_dssp SEEE-EEEEEEEETTEEEEEEESSS--------SCEEEEE--EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEE
T ss_pred cCCC-CEEEEECCCCcEEEEECCCC--------cEEEEEe--cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEe
Confidence 3445 68999999999999999874 2244443 456778888885 9999999999999877421000
Q ss_pred ---eeeeeeee-eccCccEEEEEeeCC-CCCEEEEEecCCcEEEEECCCCcccccc-cccCCCeeEEEecCCCCcEEEEE
Q 015484 204 ---VIDAMHVY-EAHESVVEDVSWHLK-NENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKEVNYLSFNPYNEWVLATA 277 (406)
Q Consensus 204 ---~~~~~~~~-~~~~~~i~~i~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~~ 277 (406)
....+... ..|...|.+++|+|. ++.++++++.||.|++||+++++..... ..+...+++++|+|++. +|++|
T Consensus 110 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~-~lasg 188 (343)
T 3lrv_A 110 DSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL-LLALY 188 (343)
T ss_dssp ETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSC-EEEEE
T ss_pred ecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCC-EEEEE
Confidence 00111222 256688999999982 4688899999999999999998876555 34556799999999998 99999
Q ss_pred eCCCcEEEEeCCCCCCCcEEecC-CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEec
Q 015484 278 SSDTTVALFDMRKMTVPLHILSS-HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG 356 (406)
Q Consensus 278 ~~dg~i~vwd~~~~~~~~~~~~~-h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (406)
+.||.|++||++++......+.. |...|++++|+|++. +|++++ |+.|++||++....... +..+.
T Consensus 189 ~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~-~l~s~~-~~~v~iwd~~~~~~~~~-----------~~~~~ 255 (343)
T 3lrv_A 189 SPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGY-WMVVEC-DQTVVCFDLRKDVGTLA-----------YPTYT 255 (343)
T ss_dssp CTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSS-EEEEEE-SSBEEEEETTSSTTCBS-----------SCCCB
T ss_pred cCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCC-EEEEEe-CCeEEEEEcCCCCccee-----------ecccc
Confidence 99999999999998764477887 999999999999997 688888 55999999987433211 11111
Q ss_pred CCCCCe--eeEEeCCCCCcEEEEEeC-CCcEEEEeCCCc
Q 015484 357 GHKAKI--SDFSWNKNDPWVISSVAD-DNTVQVWQMTDS 392 (406)
Q Consensus 357 ~h~~~v--~~~~~s~~~~~~l~s~~~-dg~i~iw~~~~~ 392 (406)
.|...+ .+++|+|+++ +|++++. |+.|+||++...
T Consensus 256 ~~~~~~~~~~~~~~~~g~-~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 256 IPEFKTGTVTYDIDDSGK-NMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp C-----CCEEEEECTTSS-EEEEEETTTTEEEEEEECTT
T ss_pred cccccccceEEEECCCCC-EEEEecCCCCcEEEEEEccc
Confidence 233334 3699999999 5777777 999999998654
No 107
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.1e-30 Score=243.13 Aligned_cols=240 Identities=10% Similarity=0.074 Sum_probs=184.9
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccc-----------------------cCCCCCceeeeCCCCCe
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQ-----------------------QDDCDPDLRLKGHDKEG 169 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~-----------------------~~~~~~~~~~~~h~~~v 169 (406)
.....|.+++|+|+| .++|+++.|++|+ |........ .........+ .|...|
T Consensus 13 ~~~~~v~sv~~SpDG-~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~-~~~~~V 88 (588)
T 2j04_A 13 EFEDWKNNLTWARDG-TLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNS-QPVCYP 88 (588)
T ss_dssp CCSSSSCCEEECTTS-CEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTT-SCSCCE
T ss_pred HhhccEEEEEECCCC-CEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeec-CCCCcE
Confidence 445778888888888 5788888888886 422221100 0011111122 457889
Q ss_pred eEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCc-----cEEEEEeeCCCCCEEEEEecCCcEEEEE
Q 015484 170 YGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHES-----VVEDVSWHLKNENLFGSAGDDCQLMIWD 244 (406)
Q Consensus 170 ~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~i~~i~~~p~~~~~l~~~~~dg~i~i~d 244 (406)
.+++|+|+|. .||+++.||.|++||... .+..+. |.. .+.+++|+| ++++|++|+.||.|++||
T Consensus 89 ~~vawSPdG~-~LAs~s~dg~V~iwd~~~--------~l~~l~-~~~~~~~~sv~svafSP-DG~~LAsgs~DGtVkIWd 157 (588)
T 2j04_A 89 RVCKPSPIDD-WMAVLSNNGNVSVFKDNK--------MLTNLD-SKGNLSSRTYHCFEWNP-IESSIVVGNEDGELQFFS 157 (588)
T ss_dssp EEEEECSSSS-CEEEEETTSCEEEEETTE--------EEEECC-CSSCSTTTCEEEEEECS-SSSCEEEEETTSEEEEEE
T ss_pred EEEEECCCCC-EEEEEeCCCcEEEEeCCc--------eeeecc-CCCccccccEEEEEEcC-CCCEEEEEcCCCEEEEEE
Confidence 9999999999 999999999999999543 234444 554 599999999 789999999999999999
Q ss_pred CCCCcc-------cccc----cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC--CcEEe-cCCCCCeEEEEE
Q 015484 245 LRTNQT-------QQRV----KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV--PLHIL-SSHTEEVFQVEW 310 (406)
Q Consensus 245 ~~~~~~-------~~~~----~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~-~~h~~~v~~i~~ 310 (406)
+.++.. +.++ .+|...|.+++|+|+| +++++.|+.|++||+..... ....+ .+|...|.+++|
T Consensus 158 ~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaF 234 (588)
T 2j04_A 158 IRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKI 234 (588)
T ss_dssp CCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEE
T ss_pred CCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEE
Confidence 998753 3454 5677899999999987 78888999999999987653 23456 478899999999
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEe--CCCCCcEEEEEeCCCcEEEEe
Q 015484 311 DPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSW--NKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 311 ~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--s~~~~~~l~s~~~dg~i~iw~ 388 (406)
+ +. .||+++ ++.|++||+.. ........+|...|.+++| +|++. .++++++||. ++|.
T Consensus 235 s--g~-~LASa~-~~tIkLWd~~~--------------~~~~~~~~gh~~~V~~va~~~s~d~~-~La~a~edG~-klw~ 294 (588)
T 2j04_A 235 V--DY-KVVLTC-PGYVHKIDLKN--------------YSISSLKTGSLENFHIIPLNHEKEST-ILLMSNKTSY-KVLL 294 (588)
T ss_dssp E--TT-EEEEEC-SSEEEEEETTT--------------TEEEEEECSCCSCCCEEEETTCSSCE-EEEECSSCEE-EEEE
T ss_pred E--CC-EEEEEe-CCeEEEEECCC--------------CeEEEEEcCCCceEEEEEeeeCCCCC-EEEEEcCCCC-EEEe
Confidence 9 44 688887 79999999986 2332333379999999999 99998 7999999999 9999
Q ss_pred CC
Q 015484 389 MT 390 (406)
Q Consensus 389 ~~ 390 (406)
..
T Consensus 295 ~d 296 (588)
T 2j04_A 295 ED 296 (588)
T ss_dssp SS
T ss_pred ec
Confidence 86
No 108
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.9e-30 Score=262.82 Aligned_cols=243 Identities=14% Similarity=0.178 Sum_probs=183.4
Q ss_pred CCCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCC
Q 015484 37 EWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDG 116 (406)
Q Consensus 37 ~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 116 (406)
.-+..++.|.|+. ..++.|+.. +.|.++... ..+......|.+
T Consensus 17 ~~~V~~lafspdg------------~~lAsgs~D-----g~I~lw~~~--------------------~~~~~~~~~~~~ 59 (902)
T 2oaj_A 17 SSKPIAAAFDFTQ------------NLLAIATVT-----GEVHIYGQQ--------------------QVEVVIKLEDRS 59 (902)
T ss_dssp SSCEEEEEEETTT------------TEEEEEETT-----SEEEEECST--------------------TCEEEEECSSCC
T ss_pred CCCcEEEEECCCC------------CEEEEEeCC-----CEEEEEeCC--------------------CcEEEEEcCCCC
Confidence 4467889998842 156666652 677776311 123344567899
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeC
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV 196 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 196 (406)
.|++++|+| + .+|++++.|++|+|||+.+. .....+. |...|++++|+|++. +|++|+.||+|++||+
T Consensus 60 ~V~~l~fsp-g-~~L~S~s~D~~v~lWd~~~~--------~~~~~~~-~~~~V~~v~~sp~g~-~l~sgs~dg~V~lwd~ 127 (902)
T 2oaj_A 60 AIKEMRFVK-G-IYLVVINAKDTVYVLSLYSQ--------KVLTTVF-VPGKITSIDTDASLD-WMLIGLQNGSMIVYDI 127 (902)
T ss_dssp CEEEEEEET-T-TEEEEEETTCEEEEEETTTC--------SEEEEEE-CSSCEEEEECCTTCS-EEEEEETTSCEEEEET
T ss_pred CEEEEEEcC-C-CEEEEEECcCeEEEEECCCC--------cEEEEEc-CCCCEEEEEECCCCC-EEEEEcCCCcEEEEEC
Confidence 999999999 6 48999999999999999873 2244554 668899999999998 9999999999999999
Q ss_pred CCccCCceeee--e----eeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccccc-------------
Q 015484 197 SALAQDKVIDA--M----HVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAH------------- 257 (406)
Q Consensus 197 ~~~~~~~~~~~--~----~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------- 257 (406)
.++... .+.. . ....+|...|.+++|+|.+...+++|+.||.| +||+++++.+..+..|
T Consensus 128 ~~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~ 205 (902)
T 2oaj_A 128 DRDQLS-SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEK 205 (902)
T ss_dssp TTTEEE-EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCC
T ss_pred CCCccc-cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccc
Confidence 876431 1100 0 22356889999999999667889999999999 9999998877666544
Q ss_pred -----CCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEE--e---cC-------------CCCCeEEEEEc---
Q 015484 258 -----EKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHI--L---SS-------------HTEEVFQVEWD--- 311 (406)
Q Consensus 258 -----~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~---~~-------------h~~~v~~i~~~--- 311 (406)
...|++++|+|++. +|++|+.||.|++||+++++. +.. + .. |...|.+++|+
T Consensus 206 ~~~~h~~~V~~v~fspdg~-~lasgs~Dg~i~lWd~~~g~~-~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~ 283 (902)
T 2oaj_A 206 TNEKRTPKVIQSLYHPNSL-HIITIHEDNSLVFWDANSGHM-IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCEN 283 (902)
T ss_dssp TTSCBCCCEEEEEECTTSS-EEEEEETTCCEEEEETTTCCE-EEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECS
T ss_pred cccccCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCcE-EEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecC
Confidence 57799999999998 999999999999999988653 332 2 11 34579999995
Q ss_pred -CCCCCEEEEEeCC-----CcEEEEeC
Q 015484 312 -PNHETVLASSADD-----RRLMVWDL 332 (406)
Q Consensus 312 -p~~~~~l~s~~~d-----g~i~iwd~ 332 (406)
|++..+|++|+.| ..+.+|++
T Consensus 284 ~pd~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 284 NPEYTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp STTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCCCceEEEEec
Confidence 4444567777665 26777773
No 109
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.98 E-value=1.3e-29 Score=238.21 Aligned_cols=237 Identities=21% Similarity=0.350 Sum_probs=202.5
Q ss_pred EEeecCCce-eEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 110 QKIRVDGEV-NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 110 ~~~~h~~~v-~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
...+|.+.| .++.+ ++ .+|++|+.||.|++||+.+. .....+.+|...|.+++|+ +. +|++|+.|
T Consensus 113 ~l~~h~~~v~~~~~~--~g-~~l~sg~~dg~i~vwd~~~~--------~~~~~~~~h~~~v~~~~~~--~~-~l~s~~~d 178 (445)
T 2ovr_B 113 VLKGHDDHVITCLQF--CG-NRIVSGSDDNTLKVWSAVTG--------KCLRTLVGHTGGVWSSQMR--DN-IIISGSTD 178 (445)
T ss_dssp EEECSTTSCEEEEEE--ET-TEEEEEETTSCEEEEETTTC--------CEEEECCCCSSCEEEEEEE--TT-EEEEEETT
T ss_pred EecccCCCcEEEEEE--cC-CEEEEEECCCcEEEEECCCC--------cEEEEEcCCCCCEEEEEec--CC-EEEEEeCC
Confidence 345788875 55554 45 68999999999999999873 4467788999999999997 44 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
|+|++||+.+++ .+..+.+|...|.+++|+ +..+++++.||.|++||+++++.+..+..|...|.+++|
T Consensus 179 g~i~vwd~~~~~------~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~-- 247 (445)
T 2ovr_B 179 RTLKVWNAETGE------CIHTLYGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-- 247 (445)
T ss_dssp SCEEEEETTTTE------EEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--
T ss_pred CeEEEEECCcCc------EEEEECCCCCcEEEEEec---CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--
Confidence 999999998763 345667899999999996 467899999999999999999999899999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGP 348 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 348 (406)
++. ++++|+.||.|++||+++... +..+..|...|.++.| ++. .+++++.||.|++||+++
T Consensus 248 ~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~--~~~-~l~~~~~d~~i~i~d~~~-------------- 308 (445)
T 2ovr_B 248 DGR-RVVSGAYDFMVKVWDPETETC-LHTLQGHTNRVYSLQF--DGI-HVVSGSLDTSIRVWDVET-------------- 308 (445)
T ss_dssp CSS-CEEEEETTSCEEEEEGGGTEE-EEEECCCSSCEEEEEE--CSS-EEEEEETTSCEEEEETTT--------------
T ss_pred CCC-EEEEEcCCCEEEEEECCCCcE-eEEecCCCCceEEEEE--CCC-EEEEEeCCCeEEEEECCC--------------
Confidence 455 899999999999999998654 7888899999999999 454 699999999999999987
Q ss_pred CeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 349 PELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 349 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
...+..+.+|...+.++.+++ . ++++++.||.|++||+.++.
T Consensus 309 ~~~~~~~~~~~~~v~~~~~~~--~-~l~~~~~dg~i~vwd~~~~~ 350 (445)
T 2ovr_B 309 GNCIHTLTGHQSLTSGMELKD--N-ILVSGNADSTVKIWDIKTGQ 350 (445)
T ss_dssp CCEEEEECCCCSCEEEEEEET--T-EEEEEETTSCEEEEETTTCC
T ss_pred CCEEEEEcCCcccEEEEEEeC--C-EEEEEeCCCeEEEEECCCCc
Confidence 356677788999999998864 4 79999999999999998764
No 110
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=3.4e-29 Score=226.52 Aligned_cols=260 Identities=13% Similarity=0.167 Sum_probs=202.9
Q ss_pred CceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEE-EEeecCCc
Q 015484 39 PSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIA-QKIRVDGE 117 (406)
Q Consensus 39 p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~ 117 (406)
+..+++|.|+. ..++.|.. ++.|.++++.-. . ...+.. ...+|.+.
T Consensus 13 ~v~~~~~~~~~------------~~l~~~~~-----dg~i~iw~~~~~-----------~-----~~~~~~~~~~~~~~~ 59 (351)
T 3f3f_A 13 LVHDVVYDFYG------------RHVATCSS-----DQHIKVFKLDKD-----------T-----SNWELSDSWRAHDSS 59 (351)
T ss_dssp CEEEEEECSSS------------SEEEEEET-----TSEEEEEEECSS-----------S-----CCEEEEEEEECCSSC
T ss_pred ceeEEEEcCCC------------CEEEEeeC-----CCeEEEEECCCC-----------C-----CcceecceeccCCCc
Confidence 68899998731 15566553 378989877622 0 123333 34469999
Q ss_pred eeEEEEcCC--CCcEEEEEeCCCeEEEEeCCCcccccc-CCCCCceeeeCCCCCeeEEEecCC--CCCeEEEecCCCeEE
Q 015484 118 VNRARCMPQ--KPNLVGTKTSSCEVYVFDCAKQAEKQQ-DDCDPDLRLKGHDKEGYGLSWSPF--KEGYLVSGSHDNKIC 192 (406)
Q Consensus 118 v~~i~~~p~--~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~dg~i~ 192 (406)
|++++|+|. + .+|++|+.||.|++||+........ ....+...+.+|...|.+++|+|+ +. +|++++.||.|+
T Consensus 60 v~~~~~~~~~d~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~ 137 (351)
T 3f3f_A 60 IVAIDWASPEYG-RIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILR 137 (351)
T ss_dssp EEEEEECCGGGC-SEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEE
T ss_pred EEEEEEcCCCCC-CEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEE
Confidence 999999994 5 7899999999999999987432110 011336677889999999999998 77 999999999999
Q ss_pred EEeCCCccCCceeeeeee-------eeccCccEEEEEeeCC--CCCEEEEEecCCcEEEEECCCCcc--cccccccCCCe
Q 015484 193 LWDVSALAQDKVIDAMHV-------YEAHESVVEDVSWHLK--NENLFGSAGDDCQLMIWDLRTNQT--QQRVKAHEKEV 261 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~-------~~~~~~~i~~i~~~p~--~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v 261 (406)
+||+.++.....+..... ...|...+.+++|+|. ++.++++++.++.+.+|+...++. +..+.+|...|
T Consensus 138 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 217 (351)
T 3f3f_A 138 LYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLI 217 (351)
T ss_dssp EEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCE
T ss_pred EecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcce
Confidence 999988765443321111 1256788999999995 488999999999998888877765 56667899999
Q ss_pred eEEEecCCCC---cEEEEEeCCCcEEEEeCCCCC---------------------------------------------C
Q 015484 262 NYLSFNPYNE---WVLATASSDTTVALFDMRKMT---------------------------------------------V 293 (406)
Q Consensus 262 ~~i~~~~~~~---~~l~~~~~dg~i~vwd~~~~~---------------------------------------------~ 293 (406)
++++|+|++. .+|++|+.||.|++||++... .
T Consensus 218 ~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (351)
T 3f3f_A 218 RSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVE 297 (351)
T ss_dssp EEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEE
T ss_pred eEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeeccccccc
Confidence 9999999982 399999999999999998642 2
Q ss_pred CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 294 PLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 294 ~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
++..+.+|...|++++|+|+++ +|++++.||.|+|||+..
T Consensus 298 ~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 298 LLSEHDDHNGEVWSVSWNLTGT-ILSSAGDDGKVRLWKATY 337 (351)
T ss_dssp EEEEECTTSSCEEEEEECSSSC-CEEEEETTSCEEEEEECT
T ss_pred EEEEEecccccEEEEEEcCCCC-EEEEecCCCcEEEEecCc
Confidence 3556778999999999999997 599999999999999986
No 111
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=1.9e-29 Score=232.19 Aligned_cols=218 Identities=17% Similarity=0.237 Sum_probs=181.3
Q ss_pred CCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec
Q 015484 157 DPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD 236 (406)
Q Consensus 157 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~ 236 (406)
.....+.+|...|++++|+|++..+|++|+.||.|++||+.++.... .....+|...|.+++|+|.++.+|++++.
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 139 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS----FIQGMGPGDAITGMKFNQFNTNQLFVSSI 139 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEE----EECCCSTTCBEEEEEEETTEEEEEEEEET
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccce----eeecCCcCCceeEEEeCCCCCCEEEEEeC
Confidence 33567789999999999999983499999999999999998764321 12224689999999999966789999999
Q ss_pred CCcEEEEECCCCccccccc---ccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCC
Q 015484 237 DCQLMIWDLRTNQTQQRVK---AHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPN 313 (406)
Q Consensus 237 dg~i~i~d~~~~~~~~~~~---~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~ 313 (406)
||.|++||++. ..+..+. .+...|.+++|+|++. +|++|+.||.|++||++ ..++..+..|...|.+++|+|+
T Consensus 140 d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~--~~~~~~~~~h~~~v~~~~~~~~ 215 (383)
T 3ei3_B 140 RGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLD--GHEIFKEKLHKAKVTHAEFNPR 215 (383)
T ss_dssp TTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETT--SCEEEEEECSSSCEEEEEECSS
T ss_pred CCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECC--CCEEEEeccCCCcEEEEEECCC
Confidence 99999999986 4444443 3457899999999998 99999999999999995 3458888999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCC-CCCcEEEEEeCCCcEEEEeCCCc
Q 015484 314 HETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNK-NDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 314 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
++.+|++++.|+.|++||++..... ..++... +|...|.+++|+| ++. +|++++.|+.|++||+.++
T Consensus 216 ~~~~l~s~~~d~~i~iwd~~~~~~~----------~~~~~~~-~~~~~v~~~~~s~~~~~-~l~~~~~d~~i~iwd~~~~ 283 (383)
T 3ei3_B 216 CDWLMATSSVDATVKLWDLRNIKDK----------NSYIAEM-PHEKPVNAAYFNPTDST-KLLTTDQRNEIRVYSSYDW 283 (383)
T ss_dssp CTTEEEEEETTSEEEEEEGGGCCST----------TCEEEEE-ECSSCEEEEEECTTTSC-EEEEEESSSEEEEEETTBT
T ss_pred CCCEEEEEeCCCEEEEEeCCCCCcc----------cceEEEe-cCCCceEEEEEcCCCCC-EEEEEcCCCcEEEEECCCC
Confidence 9868999999999999999863221 2334444 6899999999999 988 6899999999999999876
Q ss_pred cc
Q 015484 393 IY 394 (406)
Q Consensus 393 ~~ 394 (406)
..
T Consensus 284 ~~ 285 (383)
T 3ei3_B 284 SK 285 (383)
T ss_dssp TS
T ss_pred cc
Confidence 54
No 112
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=8.6e-30 Score=232.86 Aligned_cols=202 Identities=12% Similarity=0.130 Sum_probs=161.4
Q ss_pred cCCceeEEEEcCCCCcE-EEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 114 VDGEVNRARCMPQKPNL-VGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
+...+.+++|+|+|..+ +|+++.|++|+|||+.+.. +...+ .|...|.+++|+|++. +|++++.+ .++
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~--------~~~~~-~~~~~V~~v~fspdg~-~l~s~s~~-~~~ 200 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT--------EKFEI-ETRGEVKDLHFSTDGK-VVAYITGS-SLE 200 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE--------EEEEE-ECSSCCCEEEECTTSS-EEEEECSS-CEE
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc--------EEEEe-CCCCceEEEEEccCCc-eEEeccce-eEE
Confidence 34568899999999543 2455579999999998742 24444 4778899999999998 99999855 566
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC----cEEEEECCCCcc----cccccccCCCeeEE
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC----QLMIWDLRTNQT----QQRVKAHEKEVNYL 264 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg----~i~i~d~~~~~~----~~~~~~~~~~v~~i 264 (406)
+|+..++... .......|...|.+++|+| ++..+++++.|+ .+++|++..... ...+..|...|+++
T Consensus 201 ~~~~~~~~~~----~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 275 (365)
T 4h5i_A 201 VISTVTGSCI----ARKTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSM 275 (365)
T ss_dssp EEETTTCCEE----EEECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEE
T ss_pred EEEeccCcce----eeeecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeE
Confidence 6666554321 1133456888999999999 678888888777 688899876643 23457788999999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEE-ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMRKMTVPLHI-LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
+|+|+++ +||+|+.|+.|+|||+++++. +.. +.+|...|++++|+|+++ +|++|+.|++|+|||+..
T Consensus 276 ~~Spdg~-~lasgs~D~~V~iwd~~~~~~-~~~~~~gH~~~V~~v~fSpdg~-~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 276 DVDMKGE-LAVLASNDNSIALVKLKDLSM-SKIFKQAHSFAITEVTISPDST-YVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EECTTSC-EEEEEETTSCEEEEETTTTEE-EEEETTSSSSCEEEEEECTTSC-EEEEEETTSEEEEEECCT
T ss_pred EECCCCC-ceEEEcCCCEEEEEECCCCcE-EEEecCcccCCEEEEEECCCCC-EEEEEeCCCeEEEEEcCC
Confidence 9999999 999999999999999998765 555 578999999999999997 699999999999999965
No 113
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=3.7e-28 Score=217.42 Aligned_cols=242 Identities=19% Similarity=0.354 Sum_probs=194.3
Q ss_pred eeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCC
Q 015484 118 VNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVS 197 (406)
Q Consensus 118 v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~ 197 (406)
+++|+|++++ +||+|. |++|+|||+.++.. .....+.+|...|++++|+|+++ +|++|+.||+|++||++
T Consensus 28 ~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~------~~~~~~~~~~~~V~~v~~~~~~~-~l~sgs~Dg~v~iw~~~ 97 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVAL-DNSVYLWSASSGDI------LQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLWDVQ 97 (318)
T ss_dssp CBCEEECTTS--EEEEEE-TTEEEEEETTTCCE------EEEEECCSTTCCEEEEEECTTSS-EEEEEETTSEEEEEETT
T ss_pred ceEEEECCCC--EEEEEe-CCEEEEEECCCCCE------EEEEEecCCCCeEEEEEECCCCC-EEEEEECCCcEEEeecC
Confidence 5789999875 677764 89999999987422 12334457888999999999998 99999999999999998
Q ss_pred CccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc-cccccccCCCeeEEEecCCCCcEEEE
Q 015484 198 ALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT-QQRVKAHEKEVNYLSFNPYNEWVLAT 276 (406)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~l~~ 276 (406)
+++ .+..+.+|...+.++.+. +.++++++.++.+++|+...... +..+.+|...+..+.+++.+. +|++
T Consensus 98 ~~~------~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s 167 (318)
T 4ggc_A 98 QQK------RLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLAS 167 (318)
T ss_dssp TTE------EEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEE
T ss_pred Cce------eEEEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC-EEEE
Confidence 864 345667888888877765 57899999999999999987654 556688999999999999998 9999
Q ss_pred EeCCCcEEEEeCCCCCC---CcEEecCCCCCeEEEEEcCCCCCEEE--EEeCCCcEEEEeCCCCCcccccccccCCCCee
Q 015484 277 ASSDTTVALFDMRKMTV---PLHILSSHTEEVFQVEWDPNHETVLA--SSADDRRLMVWDLNRIGDEQLELDAEDGPPEL 351 (406)
Q Consensus 277 ~~~dg~i~vwd~~~~~~---~~~~~~~h~~~v~~i~~~p~~~~~l~--s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 351 (406)
++.||.|++||+++.+. .......|.+.|..+.++|.+..++. +++.++.|++||.... .
T Consensus 168 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~--------------~- 232 (318)
T 4ggc_A 168 GGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG--------------A- 232 (318)
T ss_dssp EETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC--------------C-
T ss_pred EecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc--------------c-
Confidence 99999999999987542 35566778899999999999887654 5567899999998762 2
Q ss_pred EEEecCCCCCeeeEEeCCCCCcEEEE-EeCCCcEEEEeCCCccc
Q 015484 352 LFSHGGHKAKISDFSWNKNDPWVISS-VADDNTVQVWQMTDSIY 394 (406)
Q Consensus 352 ~~~~~~h~~~v~~~~~s~~~~~~l~s-~~~dg~i~iw~~~~~~~ 394 (406)
......+...+..+.|+|.+..++++ ++.|+.|+|||+.++..
T Consensus 233 ~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~ 276 (318)
T 4ggc_A 233 CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK 276 (318)
T ss_dssp EEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE
T ss_pred ccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcE
Confidence 22233466789999999999854433 34799999999987743
No 114
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.8e-29 Score=225.64 Aligned_cols=215 Identities=14% Similarity=0.271 Sum_probs=186.8
Q ss_pred CCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEE
Q 015484 155 DCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSA 234 (406)
Q Consensus 155 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~ 234 (406)
.......+.+|...|++++|+|++. +|++|+.||.|++||+.+++ .+..+..|...|.+++|+| ++++|+++
T Consensus 21 ~~~~~~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~------~~~~~~~h~~~v~~~~~~~-~~~~l~s~ 92 (369)
T 3zwl_B 21 SHMKAIKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGE------RLGTLDGHTGTIWSIDVDC-FTKYCVTG 92 (369)
T ss_dssp CSEEEEEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCC------EEEEECCCSSCEEEEEECT-TSSEEEEE
T ss_pred cccccEEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCch------hhhhhhhcCCcEEEEEEcC-CCCEEEEE
Confidence 3444567899999999999999988 99999999999999998764 2356678999999999999 78899999
Q ss_pred ecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCC-----CcEEEEeCCCCCC----------CcEEec
Q 015484 235 GDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD-----TTVALFDMRKMTV----------PLHILS 299 (406)
Q Consensus 235 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~----------~~~~~~ 299 (406)
+.||.|++||+++++.+..+. +...+.+++|+|++. ++++++.+ |.|++||++.... ++..+.
T Consensus 93 ~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 170 (369)
T 3zwl_B 93 SADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGN-YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII 170 (369)
T ss_dssp ETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSS-EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE
T ss_pred eCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCC-EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc
Confidence 999999999999999888777 888999999999999 88999888 9999999986542 455666
Q ss_pred CCCC--CeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEE
Q 015484 300 SHTE--EVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISS 377 (406)
Q Consensus 300 ~h~~--~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s 377 (406)
.|.. .+.+++|+|+++ +|++++.||.|++||++.. ...+..+..|...|.+++|+|++. +|++
T Consensus 171 ~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~ 235 (369)
T 3zwl_B 171 THEGLDAATVAGWSTKGK-YIIAGHKDGKISKYDVSNN-------------YEYVDSIDLHEKSISDMQFSPDLT-YFIT 235 (369)
T ss_dssp CCTTCCCEEEEEECGGGC-EEEEEETTSEEEEEETTTT-------------TEEEEEEECCSSCEEEEEECTTSS-EEEE
T ss_pred CCcCccceeEEEEcCCCC-EEEEEcCCCEEEEEECCCC-------------cEeEEEEecCCCceeEEEECCCCC-EEEE
Confidence 6776 999999999997 6999999999999999762 356677788999999999999999 6899
Q ss_pred EeCCCcEEEEeCCCccc
Q 015484 378 VADDNTVQVWQMTDSIY 394 (406)
Q Consensus 378 ~~~dg~i~iw~~~~~~~ 394 (406)
++.|+.|++||+.++..
T Consensus 236 ~~~d~~i~v~d~~~~~~ 252 (369)
T 3zwl_B 236 SSRDTNSFLVDVSTLQV 252 (369)
T ss_dssp EETTSEEEEEETTTCCE
T ss_pred ecCCceEEEEECCCCce
Confidence 99999999999987643
No 115
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.4e-28 Score=221.58 Aligned_cols=243 Identities=12% Similarity=0.108 Sum_probs=180.3
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc-CCCCCceee-eCCCCCeeEEEecC--CCCCeEEEecCCCe
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ-DDCDPDLRL-KGHDKEGYGLSWSP--FKEGYLVSGSHDNK 190 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~-~~h~~~v~~l~~~~--~~~~~l~s~~~dg~ 190 (406)
...|.++.|+|. +++++.|++|++|+......... ........+ .+|...|.+++|+| ++. +|++|+.||+
T Consensus 76 ~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~ 150 (343)
T 3lrv_A 76 TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTE-YFIWADNRGT 150 (343)
T ss_dssp EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CC-EEEEEETTCC
T ss_pred cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCc
Confidence 467888889886 89999999999998875321110 011112233 36778999999999 888 9999999999
Q ss_pred EEEEeCCCccCCceeeeeeee-eccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccc-ccccc-cCCCeeEEEec
Q 015484 191 ICLWDVSALAQDKVIDAMHVY-EAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ-QRVKA-HEKEVNYLSFN 267 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~-~~~~v~~i~~~ 267 (406)
|++||++++.. .... ..+...+.+++|+| ++.+|++|+.||.|++||+++++.+ ..+.. |...|++++|+
T Consensus 151 i~~wd~~~~~~------~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs 223 (343)
T 3lrv_A 151 IGFQSYEDDSQ------YIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFA 223 (343)
T ss_dssp EEEEESSSSCE------EEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEEC
T ss_pred EEEEECCCCcE------EEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEe
Confidence 99999987643 1222 23556799999999 7899999999999999999999887 67777 99999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec---CCCCCeE--EEEEcCCCCCEEEEEeC-CCcEEEEeCCCCCccccc
Q 015484 268 PYNEWVLATASSDTTVALFDMRKMTVPLHILS---SHTEEVF--QVEWDPNHETVLASSAD-DRRLMVWDLNRIGDEQLE 341 (406)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~h~~~v~--~i~~~p~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~ 341 (406)
|++. +|++++ ++.|++||+++... +..+. .|...+. +++|+|+++ +|++++. |+.|+||++......
T Consensus 224 ~~g~-~l~s~~-~~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~~~s~~d~~i~v~~~~~~~~~--- 296 (343)
T 3lrv_A 224 DNGY-WMVVEC-DQTVVCFDLRKDVG-TLAYPTYTIPEFKTGTVTYDIDDSGK-NMIAYSNESNSLTIYKFDKKTKN--- 296 (343)
T ss_dssp TTSS-EEEEEE-SSBEEEEETTSSTT-CBSSCCCBC-----CCEEEEECTTSS-EEEEEETTTTEEEEEEECTTTCS---
T ss_pred CCCC-EEEEEe-CCeEEEEEcCCCCc-ceeecccccccccccceEEEECCCCC-EEEEecCCCCcEEEEEEcccccc---
Confidence 9998 889988 55999999998764 33332 2444444 699999997 5888887 999999999753211
Q ss_pred ccccCCCCeeEEEecCCCCCeeeEEeCC---CCCcEEEEEeCCCcEEEEeCCCc
Q 015484 342 LDAEDGPPELLFSHGGHKAKISDFSWNK---NDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 342 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~---~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
... .++..++|.+ +.. .+++++.||.+.++-....
T Consensus 297 -----------~~~----~~~~~~~~~~~~~~~~-~l~~~~~d~~~~~~~~~~~ 334 (343)
T 3lrv_A 297 -----------WTK----DEESALCLQSDTADFT-DMDVVCGDGGIAAILKTND 334 (343)
T ss_dssp -----------EEE----EEEEECCC----CCCC-EEEEEEETTEEEEEEECSS
T ss_pred -----------eEe----cCceeEecCccccccc-eeEEEecCCceEEEEecCC
Confidence 111 3577788888 777 5778888999988865443
No 116
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=6.1e-28 Score=222.72 Aligned_cols=251 Identities=11% Similarity=0.094 Sum_probs=194.8
Q ss_pred EEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeE-EEec
Q 015484 108 IAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYL-VSGS 186 (406)
Q Consensus 108 ~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l-~s~~ 186 (406)
....+.+...+.+++|+|++..++++++.++.|++||+.+.. ....+..+. .+.+++|+|+++ +| ++++
T Consensus 24 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~--------~~~~~~~~~-~v~~~~~spdg~-~l~~~~~ 93 (391)
T 1l0q_A 24 VTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN--------VIATVPAGS-SPQGVAVSPDGK-QVYVTNM 93 (391)
T ss_dssp EEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE--------EEEEEECSS-SEEEEEECTTSS-EEEEEET
T ss_pred EEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCe--------EEEEEECCC-CccceEECCCCC-EEEEEEC
Confidence 344566667799999999996666888899999999998732 244455444 899999999998 55 5666
Q ss_pred CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEe
Q 015484 187 HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSF 266 (406)
Q Consensus 187 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~ 266 (406)
.++.|++||+.+++. ...+. +...+.+++|+|++..++++++.++.|++||+++++.+..+..+ ..+.+++|
T Consensus 94 ~~~~v~v~d~~~~~~------~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~ 165 (391)
T 1l0q_A 94 ASSTLSVIDTTSNTV------AGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAV 165 (391)
T ss_dssp TTTEEEEEETTTTEE------EEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEE
T ss_pred CCCEEEEEECCCCeE------EEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEE
Confidence 789999999987643 22233 34578999999954445578888999999999998887777644 45799999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEe---CCCcEEEEeCCCCCccccccc
Q 015484 267 NPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSA---DDRRLMVWDLNRIGDEQLELD 343 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~ 343 (406)
+|+++.++++++.++.|++||+++... +..+. +...+.+++|+|+++. |++++ .++.|++||+..
T Consensus 166 ~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~-~~~~~~~~~~~~~g~~-l~~~~~~~~~~~v~~~d~~~--------- 233 (391)
T 1l0q_A 166 TPDGTKVYVANFDSMSISVIDTVTNSV-IDTVK-VEAAPSGIAVNPEGTK-AYVTNVDKYFNTVSMIDTGT--------- 233 (391)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE-CSSEEEEEEECTTSSE-EEEEEECSSCCEEEEEETTT---------
T ss_pred CCCCCEEEEEeCCCCEEEEEECCCCeE-EEEEe-cCCCccceEECCCCCE-EEEEecCcCCCcEEEEECCC---------
Confidence 999985557888899999999987643 44443 5678999999999985 55555 799999999986
Q ss_pred ccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 344 AEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 344 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
...+..+..|. .+.+++|+|++++++++++.|+.|++||+.++..
T Consensus 234 -----~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~ 278 (391)
T 1l0q_A 234 -----NKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTI 278 (391)
T ss_dssp -----TEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred -----CeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcE
Confidence 24445555554 4789999999997668889999999999987643
No 117
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=4.4e-27 Score=214.12 Aligned_cols=248 Identities=14% Similarity=0.165 Sum_probs=180.9
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeC
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV 196 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 196 (406)
.+..+++.+.+..++++++.|++|+|||..+.. +...+. |...|.+++|+++ .++++ .|+.|++||+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~--------~~~~~~-~~~~v~~v~~~~~---~~~~~-~~~~i~i~d~ 126 (355)
T 3vu4_A 60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ--------DVSRIK-VDAPVKDLFLSRE---FIVVS-YGDVISVFKF 126 (355)
T ss_dssp CCCEEEECTTSSEEEEECSSTTEEEEEETTTTE--------EEEEEE-CSSCEEEEEECSS---EEEEE-ETTEEEEEES
T ss_pred CeEEEEEcCCCCEEEEEECCccEEEEEECCCCc--------EEEEEE-CCCceEEEEEcCC---EEEEE-EcCEEEEEEC
Confidence 588899999885555778889999999998742 244454 6678999999874 34444 4789999999
Q ss_pred CCc-cCCceeeeeeeeeccCccEEEEEeeCCCCCEEEE--EecCCcEEEEECCCCc----------------cccccccc
Q 015484 197 SAL-AQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGS--AGDDCQLMIWDLRTNQ----------------TQQRVKAH 257 (406)
Q Consensus 197 ~~~-~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~--~~~dg~i~i~d~~~~~----------------~~~~~~~~ 257 (406)
.+. +.... +.. +...+++++ .+++. |+.||.|++||+++++ .+..+.+|
T Consensus 127 ~~~~~~~~~------~~~---~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h 194 (355)
T 3vu4_A 127 GNPWKRITD------DIR---FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH 194 (355)
T ss_dssp STTCCBSSC------CEE---EEEEEEEET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCC
T ss_pred CCCceeeEE------ecc---CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc
Confidence 886 33222 222 344456665 45555 5899999999999865 25677899
Q ss_pred CCCeeEEEecCCCCcEEEEEeCCCc-EEEEeCCCCCCCcEEec-C-CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 258 EKEVNYLSFNPYNEWVLATASSDTT-VALFDMRKMTVPLHILS-S-HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 258 ~~~v~~i~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~-~-h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
...|++++|+|++. +|++|+.||+ |++||++++.. +..+. + |...|.+++|+|+++ +|++++.|+.|+|||++.
T Consensus 195 ~~~v~~~~~s~~g~-~l~s~s~d~~~v~iwd~~~~~~-~~~~~~g~h~~~v~~~~~s~~~~-~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 195 TNPIKMVRLNRKSD-MVATCSQDGTIIRVFKTEDGVL-VREFRRGLDRADVVDMKWSTDGS-KLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp SSCEEEEEECTTSS-EEEEEETTCSEEEEEETTTCCE-EEEEECTTCCSCEEEEEECTTSC-EEEEEETTCEEEEEESSC
T ss_pred CCceEEEEECCCCC-EEEEEeCCCCEEEEEECCCCcE-EEEEEcCCCCCcEEEEEECCCCC-EEEEEECCCEEEEEEccC
Confidence 99999999999998 9999999998 99999998765 67776 5 999999999999997 699999999999999976
Q ss_pred CCcccccc-cc------cCCCC-eeEEEe-cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 335 IGDEQLEL-DA------EDGPP-ELLFSH-GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 335 ~~~~~~~~-~~------~~~~~-~~~~~~-~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
........ .. ..... ...+.+ ..+......++|++++. .+++++.||.+++|++..+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~-~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 272 DQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESS-LVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSE-EEEEETTTTEEEEEEEEEET
T ss_pred CCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCC-EEEEEeCCCeEEEEEEEcCC
Confidence 43211100 00 00000 001111 12223457799999999 68899999999999987643
No 118
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.4e-28 Score=243.93 Aligned_cols=215 Identities=20% Similarity=0.362 Sum_probs=181.7
Q ss_pred eeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCC-CCEEEEEecCC
Q 015484 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKN-ENLFGSAGDDC 238 (406)
Q Consensus 160 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~-~~~l~~~~~dg 238 (406)
..+.+|.+.|++++|+|++. +|++|+.||.|++||+.... ......+.+|...|.+++|+|.. +.+|++|+.||
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~-~latg~~dg~I~vwd~~~~~----~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg 77 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGET----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 77 (753)
T ss_dssp -----CCCCEEEECCCSSSC-CEEEEETTTEEEEEEEETTE----EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred eecccCcceeEEEEECCCCC-eEEEEECCCcEEEEecCCCC----CccceeccCCcCceEEEEecCCCCCCEEEEEeCCC
Confidence 45789999999999999998 99999999999999987432 23456678899999999998732 78999999999
Q ss_pred cEEEEECCCCc--ccccccccCCCeeEEEecCC--CCcEEEEEeCCCcEEEEeCCCCC-CCcEEecCCCCCeEEEEEcCC
Q 015484 239 QLMIWDLRTNQ--TQQRVKAHEKEVNYLSFNPY--NEWVLATASSDTTVALFDMRKMT-VPLHILSSHTEEVFQVEWDPN 313 (406)
Q Consensus 239 ~i~i~d~~~~~--~~~~~~~~~~~v~~i~~~~~--~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~h~~~v~~i~~~p~ 313 (406)
.|++||+++++ ....+..|...|++++|+|+ +. ++++|+.||.|++||++... .....+..|...|.+++|+|.
T Consensus 78 ~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~ 156 (753)
T 3jro_A 78 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 156 (753)
T ss_dssp CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCC
T ss_pred eEEEEECCCCcccccccccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCc
Confidence 99999999886 56667889999999999999 77 99999999999999999863 335667889999999999994
Q ss_pred -------------CCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCC---CCcEEEE
Q 015484 314 -------------HETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKN---DPWVISS 377 (406)
Q Consensus 314 -------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~---~~~~l~s 377 (406)
+. +|++|+.||.|++||++.... ...+...+.+|...|++++|+|+ +. ++++
T Consensus 157 ~~~~~~~~~~~~d~~-~l~sgs~dg~I~iwd~~~~~~----------~~~~~~~~~~h~~~V~~l~~sp~~~~~~-~l~s 224 (753)
T 3jro_A 157 TIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQ----------TYVLESTLEGHSDWVRDVAWSPTVLLRS-YLAS 224 (753)
T ss_dssp C---------CGGGC-CEEEEETTSCEEEEEEETTTT----------EEEEEEEECCCSSCEEEEEECCCCSSSE-EEEE
T ss_pred ccccccccccCCCCC-EEEEEECCCeEEEEeccCCcc----------cceeeeeecCCCCcEEEEEeccCCCCCC-EEEE
Confidence 65 699999999999999986321 12556677899999999999999 77 7999
Q ss_pred EeCCCcEEEEeCCCc
Q 015484 378 VADDNTVQVWQMTDS 392 (406)
Q Consensus 378 ~~~dg~i~iw~~~~~ 392 (406)
++.||.|++|++.++
T Consensus 225 ~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 225 VSQDRTCIIWTQDNE 239 (753)
T ss_dssp EESSSCEEEEEESSS
T ss_pred EecCCEEEEecCCCC
Confidence 999999999999886
No 119
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.1e-27 Score=209.88 Aligned_cols=255 Identities=9% Similarity=0.096 Sum_probs=173.3
Q ss_pred CCeEEEEEeecCC-----ceeEEEEcCCC-Cc-EEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCC---------
Q 015484 104 PKVEIAQKIRVDG-----EVNRARCMPQK-PN-LVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDK--------- 167 (406)
Q Consensus 104 ~~~~~~~~~~h~~-----~v~~i~~~p~~-~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~--------- 167 (406)
+.++++.++.-+. .+.++.|-..+ +. .+++++ ...|++|+..+.. +++..++...|..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~ 96 (356)
T 2w18_A 23 GNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAW-----QWEKLYTWHFAEVPVLQIVPVP 96 (356)
T ss_dssp -CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEE-SSEEEEEEESSSS-----BEEEEEEEECCSSCEEEECCCT
T ss_pred ceeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEec-cceEEEcccCCCc-----cceeeEEEeccCceeEEEEEcC
Confidence 3466666665443 34555565543 12 455555 5679999998851 1233444444443
Q ss_pred ----------------CeeEEEecCC----CCCeEEEecC--------------------CCeEEEEeCCCccCCceeee
Q 015484 168 ----------------EGYGLSWSPF----KEGYLVSGSH--------------------DNKICLWDVSALAQDKVIDA 207 (406)
Q Consensus 168 ----------------~v~~l~~~~~----~~~~l~s~~~--------------------dg~i~iwd~~~~~~~~~~~~ 207 (406)
.|.+++++|+ +. .+++++. |+.|++|++..... .
T Consensus 97 ~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~-~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~-----~ 170 (356)
T 2w18_A 97 DVYNLVCVALGNLEIREIRALFCSSDDESEKQ-VLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGG-----G 170 (356)
T ss_dssp TCCSCEEEEECSSSEEEEEEECC------CCE-EEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSC-----E
T ss_pred cccceeeeeeccccccceEEEEECCCcccccc-EEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCc-----e
Confidence 4566777777 55 5666543 77777777744211 1
Q ss_pred eeeeeccCccEEEEEeeC--CCCCEEEEEecCCcEEEEECCCCcccccccccC---CCeeEEEecCCCCcEE--------
Q 015484 208 MHVYEAHESVVEDVSWHL--KNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHE---KEVNYLSFNPYNEWVL-------- 274 (406)
Q Consensus 208 ~~~~~~~~~~i~~i~~~p--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~v~~i~~~~~~~~~l-------- 274 (406)
+.....|...+..++|+| .++.+|++++.|++|+|||+++++.+.++.+|. ..+.+++|+|++. ++
T Consensus 171 ~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~-~lvs~s~~~~ 249 (356)
T 2w18_A 171 KENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGL-LFIVLSHPCA 249 (356)
T ss_dssp EEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTE-EEEEEC----
T ss_pred eeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCC-EEEEeccCCC
Confidence 234456777777788876 356899999999999999999999999887543 4677889999987 44
Q ss_pred ----EEEeCCCcEEEEeCCCCCCCcEEe-----cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccccccc
Q 015484 275 ----ATASSDTTVALFDMRKMTVPLHIL-----SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAE 345 (406)
Q Consensus 275 ----~~~~~dg~i~vwd~~~~~~~~~~~-----~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 345 (406)
++|+.|++|++||..++.. +..+ .+|...+.+..++ +. ++++++.|++|+|||+.+
T Consensus 250 ~w~laSGs~D~tIklWd~~tgk~-l~v~~~~~p~Gh~~~~lsg~~s--g~-~lASgS~DgTIkIWDl~t----------- 314 (356)
T 2w18_A 250 KESESLRSPVFQLIVINPKTTLS-VGVMLYCLPPGQAGRFLEGDVK--DH-CAAAILTSGTIAIWDLLL----------- 314 (356)
T ss_dssp --------CCEEEEEEETTTTEE-EEEEEECCCTTCCCCEEEEEEE--TT-EEEEEETTSCEEEEETTT-----------
T ss_pred cceeeccCCCcEEEEEECCCCEE-EEEEEeeccCCCcceeEccccC--CC-EEEEEcCCCcEEEEECCC-----------
Confidence 6788899999999987654 3333 4666666555555 54 799999999999999987
Q ss_pred CCCCeeEEEecCCCCCee-eEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 346 DGPPELLFSHGGHKAKIS-DFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 346 ~~~~~~~~~~~~h~~~v~-~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
.+++..+.+|...+. .++|+|+|+ +|++|+.|++|+|||+.
T Consensus 315 ---Gk~l~tL~gH~~~vvs~vafSPDG~-~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 315 ---GQCTALLPPVSDQHWSFVKWSGTDS-HLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp ---CSEEEEECCC--CCCCEEEECSSSS-EEEEECTTSCEEEEEEC
T ss_pred ---CcEEEEecCCCCCeEEEEEECCCCC-EEEEEECCCcEEEecCC
Confidence 467778888887666 589999999 69999999999999863
No 120
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=3.1e-27 Score=221.00 Aligned_cols=260 Identities=12% Similarity=0.072 Sum_probs=202.1
Q ss_pred CCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEE
Q 015484 104 PKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLV 183 (406)
Q Consensus 104 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 183 (406)
..++....+.+...+.+++|+| +..++++++.++.|++||+.+..... ..+...+.+|...|.+++|++++. +++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~---~~~~~~~~~~~~~v~~~~~~~~~~-~~~ 185 (433)
T 3bws_A 111 ITHRFISRFKTGFQPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVR---LSPPEKYKKKLGFVETISIPEHNE-LWV 185 (433)
T ss_dssp CSEEEEEEEECSSCBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEE---ECCCHHHHTTCCEEEEEEEGGGTE-EEE
T ss_pred CcceEEEEEcCCCCceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEee---ecCcccccccCCceeEEEEcCCCE-EEE
Confidence 3556677777777888999999 44788888899999999998743211 111114568899999999999887 999
Q ss_pred EecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeE
Q 015484 184 SGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNY 263 (406)
Q Consensus 184 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 263 (406)
+++.|+.|++||+.+++. ...+..|...+.+++|+|++..++++++.++.|++||+++++.+..+.. ...+.+
T Consensus 186 s~~~d~~v~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~ 258 (433)
T 3bws_A 186 SQMQANAVHVFDLKTLAY------KATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRG 258 (433)
T ss_dssp EEGGGTEEEEEETTTCCE------EEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEE
T ss_pred EECCCCEEEEEECCCceE------EEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceE
Confidence 999999999999987532 2445568889999999995555556777899999999999887777654 445899
Q ss_pred EEecCCCCcEEEEEe--------CCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 015484 264 LSFNPYNEWVLATAS--------SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI 335 (406)
Q Consensus 264 i~~~~~~~~~l~~~~--------~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~ 335 (406)
++|+|++. .+++++ .||.|++||+++.+. +. ...|...+.+++|+|+++.++++++.|+.|++||+..
T Consensus 259 ~~~~~~g~-~l~~~~~~~~~~~~~dg~i~~~d~~~~~~-~~-~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~- 334 (433)
T 3bws_A 259 LLLSKDGK-ELYIAQFSASNQESGGGRLGIYSMDKEKL-ID-TIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE- 334 (433)
T ss_dssp EEECTTSS-EEEEEEEESCTTCSCCEEEEEEETTTTEE-EE-EEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT-
T ss_pred EEEcCCCC-EEEEEECCCCccccCCCeEEEEECCCCcE-Ee-eccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC-
Confidence 99999998 677666 588999999987543 33 3345668999999999987788889999999999986
Q ss_pred CcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeC---------------CCcEEEEeCCCccc
Q 015484 336 GDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVAD---------------DNTVQVWQMTDSIY 394 (406)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~---------------dg~i~iw~~~~~~~ 394 (406)
...+.... +...+.+++|+|++++ +++++. ||.|++||+.++..
T Consensus 335 -------------~~~~~~~~-~~~~~~~~~~s~dg~~-l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~ 393 (433)
T 3bws_A 335 -------------KKVQKSIP-VFDKPNTIALSPDGKY-LYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV 393 (433)
T ss_dssp -------------TEEEEEEE-CSSSEEEEEECTTSSE-EEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE
T ss_pred -------------CcEEEEec-CCCCCCeEEEcCCCCE-EEEEecCCCccccccccccccceEEEEEECCCCcE
Confidence 23333333 5677999999999994 555554 57999999987643
No 121
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.9e-28 Score=228.14 Aligned_cols=309 Identities=11% Similarity=0.072 Sum_probs=205.6
Q ss_pred CCCCceEEEEecCCCCCCCCCCCceeEEEEEeec--CCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEee
Q 015484 36 LEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTH--TSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIR 113 (406)
Q Consensus 36 ~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~--~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (406)
+.--..++.|.||....+++..+ ..-+ -|.. ...++++.+. .+.+.|++.. . .-+ .. ...-.....+.
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D-~TV~--d~~~~~~l~gh~~~v~--~V~FsPdg~~-~--~~~-~~-~~~~~~~~~~~ 83 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPD-ISIG--QPKYAKDINCNSKNLF--HVKEFPLEFE-N--KLD-FE-LAQQNGLLNSQ 83 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSS-EEEE--EECCCSCCSSBGGGTE--EEEEECCCCC-C--TTT-TS-CCCSSCSSTTS
T ss_pred hhccEEEEEECCCCCEEEEEcCC-ceee--cccccceecCCCccEE--EEEECCCCCc-c--eEE-EE-eCCCceEeecC
Confidence 34456789999987644121111 1111 1222 1245666666 5555445521 1 111 00 00111122336
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCC-----CeeEEEecCCCCCeEEEecCC
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDK-----EGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~~~~~~~~l~s~~~d 188 (406)
|...|.+++|+|+| ..||+++.||+|+||+.+. ....+. |.. .+.+++|||+|+ +|++|+.|
T Consensus 84 ~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~----------~l~~l~-~~~~~~~~sv~svafSPDG~-~LAsgs~D 150 (588)
T 2j04_A 84 PVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK----------MLTNLD-SKGNLSSRTYHCFEWNPIES-SIVVGNED 150 (588)
T ss_dssp CSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE----------EEEECC-CSSCSTTTCEEEEEECSSSS-CEEEEETT
T ss_pred CCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc----------eeeecc-CCCccccccEEEEEEcCCCC-EEEEEcCC
Confidence 68899999999999 6899999999999999654 133344 554 599999999999 99999999
Q ss_pred CeEEEEeCCCccCCce-eeeeeee----eccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccc---ccc-cccCC
Q 015484 189 NKICLWDVSALAQDKV-IDAMHVY----EAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ---QRV-KAHEK 259 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~-~~~~~~~----~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~-~~~~~ 259 (406)
|+|++||+..+..... +-.+..+ .+|...|.+++|+| ++ +++++.|+.|++||+..+... ..+ .+|..
T Consensus 151 GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~ 227 (588)
T 2j04_A 151 GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRR 227 (588)
T ss_dssp SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSS
T ss_pred CEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCCCccccceeeecccccC
Confidence 9999999988642111 0112343 56778999999999 44 778899999999999887743 345 47888
Q ss_pred CeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEE--cCCCCCEEEEEeCCCcEEEEeCCCCC-
Q 015484 260 EVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEW--DPNHETVLASSADDRRLMVWDLNRIG- 336 (406)
Q Consensus 260 ~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~--~p~~~~~l~s~~~dg~i~iwd~~~~~- 336 (406)
.|.+++|+ +. .||+++ ++.|++||+..... .....+|...|..+.| +|++. .|++++.||+ ++|......
T Consensus 228 ~V~svaFs--g~-~LASa~-~~tIkLWd~~~~~~-~~~~~gh~~~V~~va~~~s~d~~-~La~a~edG~-klw~~d~~~~ 300 (588)
T 2j04_A 228 KITDLKIV--DY-KVVLTC-PGYVHKIDLKNYSI-SSLKTGSLENFHIIPLNHEKEST-ILLMSNKTSY-KVLLEDELHV 300 (588)
T ss_dssp CCCCEEEE--TT-EEEEEC-SSEEEEEETTTTEE-EEEECSCCSCCCEEEETTCSSCE-EEEECSSCEE-EEEESSSEEE
T ss_pred cEEEEEEE--CC-EEEEEe-CCeEEEEECCCCeE-EEEEcCCCceEEEEEeeeCCCCC-EEEEEcCCCC-EEEeeccEEE
Confidence 99999999 55 888887 69999999987543 2333389999999999 99996 6999999999 999985311
Q ss_pred ----ccccccc----ccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEe
Q 015484 337 ----DEQLELD----AEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVA 379 (406)
Q Consensus 337 ----~~~~~~~----~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~ 379 (406)
......+ .-......+..+. +...|.+++|+|+|+ ++|+++
T Consensus 301 spd~~l~a~~d~~v~lW~~~g~~l~~~~-~~~~I~~va~SPdG~-~lA~~~ 349 (588)
T 2j04_A 301 TADNIIAPYLEKKFKKWSTIWNEFNNYE-TTLVIHGISLSPDGY-SIAIVY 349 (588)
T ss_dssp ECCCSSHHHHHHHHHHTTTTTTSSSSSC-CEEEEEEEEECTTSS-EEEEEE
T ss_pred CCCceEEEEcCCEEEEEECCCCceeeec-cceEEEEEEECCCCC-EEEEEE
Confidence 0000000 0000001111222 245699999999999 688775
No 122
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=3.6e-28 Score=224.47 Aligned_cols=280 Identities=14% Similarity=0.147 Sum_probs=182.0
Q ss_pred EeecCCceeEEEEc---CCCCcEEEEEeCCCeEEEEeCCCccccccCCCC-CceeeeCCCCCeeEEEec-----------
Q 015484 111 KIRVDGEVNRARCM---PQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCD-PDLRLKGHDKEGYGLSWS----------- 175 (406)
Q Consensus 111 ~~~h~~~v~~i~~~---p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~~~h~~~v~~l~~~----------- 175 (406)
.+.-+....++.|+ |+.+.++++|. ++.|.+|+............. .......+...+..+.|+
T Consensus 11 ~lpl~~~p~~~~w~~~~~~~~~l~a~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (393)
T 4gq1_A 11 QLPLNVRPYTTTWCSQSPSCSNLLAIGH-DTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHD 89 (393)
T ss_dssp ECCTTCCEEEEEECTTSGGGTTEEEEEE-SSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC---
T ss_pred EecCCCCCeEEEEeCCCCCCCCEEEEEC-CCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccC
Confidence 34445666777775 44556666654 777999986543221100000 000111233344444443
Q ss_pred ---------CCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeC-------CCCCEEEEEecCCc
Q 015484 176 ---------PFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHL-------KNENLFGSAGDDCQ 239 (406)
Q Consensus 176 ---------~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p-------~~~~~l~~~~~dg~ 239 (406)
+++. +|++|+.|++|++||+..+... ....+..+.+|...|++++|+| .++++|++++.|++
T Consensus 90 ~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~-~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t 167 (393)
T 4gq1_A 90 GDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETII-TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT 167 (393)
T ss_dssp -------CCEEEE-EEEEEETTSCEEEEEEETTEEE-EEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred CCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccc-eeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence 3333 7999999999999999876432 1223455678999999999987 25789999999999
Q ss_pred EEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCc------------------------
Q 015484 240 LMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPL------------------------ 295 (406)
Q Consensus 240 i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~------------------------ 295 (406)
|++||++++..+..+..|...|.+++|+|++..+|++|+.||.|++||+++.....
T Consensus 168 v~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 247 (393)
T 4gq1_A 168 LIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT 247 (393)
T ss_dssp EEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred EEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence 99999998888777888999999999999987689999999999999998764311
Q ss_pred EEecCCCCCeEEEEEc-CCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC-----CCCeeEEEecCCCCCeeeEEeCC
Q 015484 296 HILSSHTEEVFQVEWD-PNHETVLASSADDRRLMVWDLNRIGDEQLELDAED-----GPPELLFSHGGHKAKISDFSWNK 369 (406)
Q Consensus 296 ~~~~~h~~~v~~i~~~-p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~s~ 369 (406)
....+|...+.++.|+ |++. .|++++.|+.+++||+.............. ...........+...+..+.+.+
T Consensus 248 ~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (393)
T 4gq1_A 248 CHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPR 326 (393)
T ss_dssp ----CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred eecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccC
Confidence 1124677889999987 6776 699999999999999976432211110000 00011122233333333333444
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 370 NDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 370 ~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.+..++++|+.||.|+|||+.++..
T Consensus 327 ~~~~~~~sgs~Dg~V~lwd~~~~~~ 351 (393)
T 4gq1_A 327 YMDYFATAHSQHGLIQLINTYEKDS 351 (393)
T ss_dssp CTTEEEEEETTTTEEEEEETTCTTC
T ss_pred CCCEEEEEECCCCEEEEEECCCCcE
Confidence 4554678888999999999988754
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1e-26 Score=217.43 Aligned_cols=242 Identities=11% Similarity=0.108 Sum_probs=190.2
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeE-EEecCCCeE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYL-VSGSHDNKI 191 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l-~s~~~dg~i 191 (406)
+|.+.|++++|+|++ .++++++.|+.|++||+... .....+..|...+.+++|+|++. .+ ++++.|+.|
T Consensus 167 ~~~~~v~~~~~~~~~-~~~~s~~~d~~v~~~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~i 236 (433)
T 3bws_A 167 KKLGFVETISIPEHN-ELWVSQMQANAVHVFDLKTL--------AYKATVDLTGKWSKILLYDPIRD-LVYCSNWISEDI 236 (433)
T ss_dssp TTCCEEEEEEEGGGT-EEEEEEGGGTEEEEEETTTC--------CEEEEEECSSSSEEEEEEETTTT-EEEEEETTTTEE
T ss_pred ccCCceeEEEEcCCC-EEEEEECCCCEEEEEECCCc--------eEEEEEcCCCCCeeEEEEcCCCC-EEEEEecCCCcE
Confidence 578899999999988 78999999999999999873 33566778899999999999998 55 566689999
Q ss_pred EEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe--------cCCcEEEEECCCCcccccccccCCCeeE
Q 015484 192 CLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG--------DDCQLMIWDLRTNQTQQRVKAHEKEVNY 263 (406)
Q Consensus 192 ~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 263 (406)
++||+.++.. ...+.. ...+.+++|+| ++..+++++ .||.|++||+++++.+..+ .+...+.+
T Consensus 237 ~~~d~~~~~~------~~~~~~-~~~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~ 307 (433)
T 3bws_A 237 SVIDRKTKLE------IRKTDK-IGLPRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRH 307 (433)
T ss_dssp EEEETTTTEE------EEECCC-CSEEEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEE
T ss_pred EEEECCCCcE------EEEecC-CCCceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcce
Confidence 9999987542 222332 45689999999 566666766 4889999999988776655 35568899
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeC---------------CCcEE
Q 015484 264 LSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSAD---------------DRRLM 328 (406)
Q Consensus 264 i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~---------------dg~i~ 328 (406)
++|+|+++.++++++.++.|++||+++.+. +..+. +...+.+++|+|+++. |++++. ||.|+
T Consensus 308 ~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~-l~~~~~~~~~~~~~~~~~g~~dg~v~ 384 (433)
T 3bws_A 308 IVSGNTENKIYVSDMCCSKIEVYDLKEKKV-QKSIP-VFDKPNTIALSPDGKY-LYVSCRGPNHPTEGYLKKGLVLGKVY 384 (433)
T ss_dssp EEECSSTTEEEEEETTTTEEEEEETTTTEE-EEEEE-CSSSEEEEEECTTSSE-EEEEECCCCCTTTCTTSCCSSCCEEE
T ss_pred EEECCCCCEEEEEecCCCEEEEEECCCCcE-EEEec-CCCCCCeEEEcCCCCE-EEEEecCCCccccccccccccceEEE
Confidence 999999986778889999999999987543 44444 6788999999999974 556554 57999
Q ss_pred EEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 329 VWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 329 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
+||+.+ .+.+..+.. ...+.+++|+|+++++++++..|+.|++|++..
T Consensus 385 ~~d~~~--------------~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 385 VIDTTT--------------DTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEETTT--------------TEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EEECCC--------------CcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 999976 244444444 457999999999995444444599999999864
No 124
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=2.8e-27 Score=215.88 Aligned_cols=217 Identities=21% Similarity=0.304 Sum_probs=168.1
Q ss_pred CCCceeeeCCCCCeeEEEecCCC---CCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEE
Q 015484 156 CDPDLRLKGHDKEGYGLSWSPFK---EGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFG 232 (406)
Q Consensus 156 ~~~~~~~~~h~~~v~~l~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~ 232 (406)
..+...+.+|...|++++|+|++ . +|++|+.||.|++||+.+... .....+..|...|.+++|+| ++.+|+
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~h~~~v~~~~~~~-~~~~l~ 102 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQ----TIPKAQQMHTGPVLDVCWSD-DGSKVF 102 (368)
T ss_dssp TCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSC----EEEEEEEECSSCEEEEEECT-TSSEEE
T ss_pred cceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCc----eeEEEeccccCCEEEEEECc-CCCEEE
Confidence 45567788999999999999984 5 999999999999999987321 12255677999999999999 788999
Q ss_pred EEecCCcEEEEECCCCcccccccccCCCeeEEEe--cCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCC--------
Q 015484 233 SAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSF--NPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHT-------- 302 (406)
Q Consensus 233 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~--~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~-------- 302 (406)
+++.||.|++||+++++.+. +..|...|.+++| +|++. +|++++.||.|++||+++... +..+..|.
T Consensus 103 s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~ 179 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNP-MMVLQLPERCYCADVI 179 (368)
T ss_dssp EEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSC-SEEEECSSCEEEEEEE
T ss_pred EEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcE-EEEEecCCCceEEEec
Confidence 99999999999999887655 4568999999999 88887 899999999999999998654 44544432
Q ss_pred ---------------------------------CCeEEEEEcCCCC---CEEEEEeCCCcEEEEeCCCCCcccccccccC
Q 015484 303 ---------------------------------EEVFQVEWDPNHE---TVLASSADDRRLMVWDLNRIGDEQLELDAED 346 (406)
Q Consensus 303 ---------------------------------~~v~~i~~~p~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 346 (406)
..+.++.+.+... ..+++++.||.|++||++.....
T Consensus 180 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~-------- 251 (368)
T 3mmy_A 180 YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA-------- 251 (368)
T ss_dssp TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH--------
T ss_pred CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc--------
Confidence 2233333333322 12777888888888888763210
Q ss_pred CCCeeEEEecCCCC------------CeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 347 GPPELLFSHGGHKA------------KISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 347 ~~~~~~~~~~~h~~------------~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
..+..+.+|.. .|.+++|+|+++ +|++++.||.|++||+.++.
T Consensus 252 ---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~i~iwd~~~~~ 306 (368)
T 3mmy_A 252 ---KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG-TLATVGSDGRFSFWDKDART 306 (368)
T ss_dssp ---HHSEEEECSEEC----CCCEEECCEEEEEECTTTC-CEEEEETTSCEEEEETTTTE
T ss_pred ---ccceeeeeeecccccccccccccceEEEEEecCCC-EEEEEccCCeEEEEECCCCc
Confidence 22334444544 799999999999 58999999999999999864
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=4.3e-27 Score=206.13 Aligned_cols=261 Identities=17% Similarity=0.188 Sum_probs=177.3
Q ss_pred hhhhhhcCh----hHhhhhhcCCCCCCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCC
Q 015484 17 FTVWKKNTP----FLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSES 92 (406)
Q Consensus 17 ~~~wk~~~~----~ly~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~ 92 (406)
.+.||.... .+|-+.++ +-|.+.+.++|+.... ..+.+|.-. .+. |..+.+.+++..+
T Consensus 65 v~lw~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~---------~~~~~~~~~----~~~--v~sla~spd~~~~ 126 (356)
T 2w18_A 65 VSLWKALDAWQWEKLYTWHFA---EVPVLQIVPVPDVYNL---------VCVALGNLE----IRE--IRALFCSSDDESE 126 (356)
T ss_dssp EEEEEESSSSBEEEEEEEECC---SSCEEEECCCTTCCSC---------EEEEECSSS----EEE--EEEECC------C
T ss_pred EEEcccCCCccceeeEEEecc---CceeEEEEEcCcccce---------eeeeecccc----ccc--eEEEEECCCcccc
Confidence 356887776 33433333 3389999998864433 456666541 223 4466666543322
Q ss_pred CCCCCCCCCCCCCeEEEEEeecCCceeEEEEcCCCCcEEEEEe--CCCeEEEEeCCCccccccCCCCCceeeeCCCCCee
Q 015484 93 NVGGKNENPVIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKT--SSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGY 170 (406)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~ 170 (406)
. +....-+|...|..+ +.+ .++.+++ .|+.|++|++... .+....+.+|...+.
T Consensus 127 ~-------------~~l~s~g~~~~v~~l---~~g-~lv~ss~~g~d~~V~~~~~s~d-------G~~~~s~~~~~~~v~ 182 (356)
T 2w18_A 127 K-------------QVLLKSGNIKAVLGL---TKR-RLVSSSGTLSDQQVEVMTFAED-------GGGKENQFLMPPEET 182 (356)
T ss_dssp C-------------EEEEEEEEEEEEEEE---TTT-EEEEEESSSTTCEEEEEEECTT-------SCEEEEEEECCCSSC
T ss_pred c-------------cEEEeCCCeEEEEec---CCC-cEEEecccCCCCcEEEEEECCC-------CceeeeeccCCCcee
Confidence 2 122223455555554 555 5666643 5999999999652 333567788999999
Q ss_pred EEEecC---CCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccC---ccEEEEEeeCCCCCEE------------E
Q 015484 171 GLSWSP---FKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHE---SVVEDVSWHLKNENLF------------G 232 (406)
Q Consensus 171 ~l~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~i~~i~~~p~~~~~l------------~ 232 (406)
.++|++ ++. +|++|+.|++|+|||+.+++.. ..+.+|. ..+.+++|+| ++.++ +
T Consensus 183 ~l~fs~~~g~~~-~LaSgS~D~TIkIWDl~TGk~l------~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~la 254 (356)
T 2w18_A 183 ILTFAEVQGMQE-ALLGTTIMNNIVIWNLKTGQLL------KKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESES 254 (356)
T ss_dssp EEEEEEEETSTT-EEEEEETTSEEEEEETTTCCEE------EEEECCC---CCCEEEEEEE-TTEEEEEEC---------
T ss_pred eEEeeccCCCCc-eEEEecCCCcEEEEECCCCcEE------EEEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceee
Confidence 999999 556 9999999999999999987542 4444433 3577778999 45554 6
Q ss_pred EEecCCcEEEEECCCCcccccc-----cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeE-
Q 015484 233 SAGDDCQLMIWDLRTNQTQQRV-----KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVF- 306 (406)
Q Consensus 233 ~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~- 306 (406)
+|+.|++|++||..+++.+..+ .+|...+.+..++ +. ++++|+.|++|+|||+++++. +.++.+|...+.
T Consensus 255 SGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~-~lASgS~DgTIkIWDl~tGk~-l~tL~gH~~~vvs 330 (356)
T 2w18_A 255 LRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DH-CAAAILTSGTIAIWDLLLGQC-TALLPPVSDQHWS 330 (356)
T ss_dssp ---CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TT-EEEEEETTSCEEEEETTTCSE-EEEECCC--CCCC
T ss_pred ccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CC-EEEEEcCCCcEEEEECCCCcE-EEEecCCCCCeEE
Confidence 7889999999999998876544 3455555444444 55 899999999999999998765 888988887655
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEeC
Q 015484 307 QVEWDPNHETVLASSADDRRLMVWDL 332 (406)
Q Consensus 307 ~i~~~p~~~~~l~s~~~dg~i~iwd~ 332 (406)
.++|+|+++ +|++|+.|++|+|||+
T Consensus 331 ~vafSPDG~-~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 331 FVKWSGTDS-HLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEECSSSS-EEEEECTTSCEEEEEE
T ss_pred EEEECCCCC-EEEEEECCCcEEEecC
Confidence 589999997 6999999999999985
No 126
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=1.1e-25 Score=207.71 Aligned_cols=231 Identities=16% Similarity=0.138 Sum_probs=178.6
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeee
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAM 208 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 208 (406)
.++++++.++.|++||+.+. +....+..|. .+.+++|+|+++.++++++.|+.|++||+.+++. +
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~--------~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~------~ 67 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSN--------KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV------I 67 (391)
T ss_dssp EEEEEETTTTEEEEEETTTT--------EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE------E
T ss_pred EEEEEcCCCCEEEEEECCCC--------eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeE------E
Confidence 57899999999999999873 2245566554 5899999999983347888999999999987643 2
Q ss_pred eeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeC
Q 015484 209 HVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDM 288 (406)
Q Consensus 209 ~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~ 288 (406)
..+.. ...+.+++|+|++..++++++.++.|++||+.+++.+..+.. ...+.+++|+|+++.++++++.++.|++||+
T Consensus 68 ~~~~~-~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~ 145 (391)
T 1l0q_A 68 ATVPA-GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINT 145 (391)
T ss_dssp EEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred EEEEC-CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 33333 348999999995554556677789999999999888777664 4568999999999955578888999999999
Q ss_pred CCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeC
Q 015484 289 RKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWN 368 (406)
Q Consensus 289 ~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 368 (406)
++.+. +..+..+ ..+.+++|+|+++.++++++.++.|++||++. ...+.... +...+.+++|+
T Consensus 146 ~~~~~-~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~--------------~~~~~~~~-~~~~~~~~~~~ 208 (391)
T 1l0q_A 146 VTKAV-INTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVT--------------NSVIDTVK-VEAAPSGIAVN 208 (391)
T ss_dssp TTTEE-EEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT--------------TEEEEEEE-CSSEEEEEEEC
T ss_pred CCCcE-EEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCC--------------CeEEEEEe-cCCCccceEEC
Confidence 87654 5555554 56799999999987667888999999999986 23333333 45578999999
Q ss_pred CCCCcEEEEEe--CCCcEEEEeCCCcc
Q 015484 369 KNDPWVISSVA--DDNTVQVWQMTDSI 393 (406)
Q Consensus 369 ~~~~~~l~s~~--~dg~i~iw~~~~~~ 393 (406)
|+++++++++. .++.|++||+.++.
T Consensus 209 ~~g~~l~~~~~~~~~~~v~~~d~~~~~ 235 (391)
T 1l0q_A 209 PEGTKAYVTNVDKYFNTVSMIDTGTNK 235 (391)
T ss_dssp TTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred CCCCEEEEEecCcCCCcEEEEECCCCe
Confidence 99995444443 68999999998763
No 127
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.94 E-value=1.3e-23 Score=190.55 Aligned_cols=295 Identities=9% Similarity=0.087 Sum_probs=201.7
Q ss_pred eEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCCceeEEEEcCCCCcEEEEEeC--CC
Q 015484 61 VHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTS--SC 138 (406)
Q Consensus 61 ~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~--dg 138 (406)
.+++++|+++.. ....++++.+... ++++.......+...+..++|+|++. +++++.. ++
T Consensus 2 ~~~~~vg~y~~~-~~~~i~v~~~d~~----------------tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~ 63 (347)
T 3hfq_A 2 QERILFGTYTKK-TSQGIYQGTLDTT----------------AKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEG 63 (347)
T ss_dssp EEEEEEEECCSS-SCCEEEEEEEETT----------------TTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEE
T ss_pred CcEEEEEeccCC-CCCCEEEEEEcCC----------------CCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCc
Confidence 367899998754 3467888877622 13455556677788899999999995 5555543 68
Q ss_pred eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec-CCCeEEEEeCCCccCCceeeeeeeeec----
Q 015484 139 EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS-HDNKICLWDVSALAQDKVIDAMHVYEA---- 213 (406)
Q Consensus 139 ~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~---- 213 (406)
.|++|++.... ......+..+...+..++|+|+++ +|++++ .++.|.+|++....... .+..+..
T Consensus 64 ~v~~~~~~~g~------~~~~~~~~~~~~~p~~~a~spdg~-~l~~~~~~~~~v~v~~~~~~g~~~---~~~~~~~~~~~ 133 (347)
T 3hfq_A 64 GIAAWQIDGQT------AHKLNTVVAPGTPPAYVAVDEARQ-LVYSANYHKGTAEVMKIAADGALT---LTDTVQHSGHG 133 (347)
T ss_dssp EEEEEEEETTE------EEEEEEEEEESCCCSEEEEETTTT-EEEEEETTTTEEEEEEECTTSCEE---EEEEEECCCCC
T ss_pred eEEEEEecCCc------EEEeeeeecCCCCCEEEEECCCCC-EEEEEeCCCCEEEEEEeCCCCCee---ecceeecCCCC
Confidence 99999996532 222344455677889999999998 777776 78999999996432211 1222211
Q ss_pred -----cCccEEEEEeeCCCCCEEEEEecCCcEEEEECC-CCcccc--cccc-cCCCeeEEEecCCCCcEEEEEeCCCcEE
Q 015484 214 -----HESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR-TNQTQQ--RVKA-HEKEVNYLSFNPYNEWVLATASSDTTVA 284 (406)
Q Consensus 214 -----~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~-~~~~~~--~~~~-~~~~v~~i~~~~~~~~~l~~~~~dg~i~ 284 (406)
....+.+++|+|++ +++++...++.|.+||+. +++... .+.. .......++|+|+|+.+++++..++.|.
T Consensus 134 p~~~~~~~~~~~~~~spdg-~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~ 212 (347)
T 3hfq_A 134 PRPEQDGSHIHYTDLTPDN-RLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIA 212 (347)
T ss_dssp SSTTCSSCCEEEEEECTTS-CEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred CCccccCCCceEEEECCCC-cEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEE
Confidence 12348889999954 477777788999999998 443321 1111 2336778999999995555566788999
Q ss_pred EEeCCCCCCC---cEEecCCC------CCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEe
Q 015484 285 LFDMRKMTVP---LHILSSHT------EEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH 355 (406)
Q Consensus 285 vwd~~~~~~~---~~~~~~h~------~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 355 (406)
+|++...... +..+.... ..+..++|+|++++++++...++.|.+|++...+ ....+...
T Consensus 213 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g-----------~~~~~~~~ 281 (347)
T 3hfq_A 213 SLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG-----------HLTLIQQI 281 (347)
T ss_dssp EEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG-----------CEEEEEEE
T ss_pred EEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC-----------cEEEeEEE
Confidence 9998752111 22222222 3588999999998766777789999999987411 12444555
Q ss_pred cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEE--eCCCcccC
Q 015484 356 GGHKAKISDFSWNKNDPWVISSVADDNTVQVW--QMTDSIYR 395 (406)
Q Consensus 356 ~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw--~~~~~~~~ 395 (406)
..+...+..++|+|+|++++++...++.|.+| +..++.+.
T Consensus 282 ~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 282 STEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp ECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred ecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 55666789999999999655555556899999 55556544
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=5.9e-24 Score=197.45 Aligned_cols=246 Identities=10% Similarity=0.050 Sum_probs=182.7
Q ss_pred EEEeecCCceeEEEEcCC--------------CCcEEEEEeCC------CeEEEEeCCCccccccCCCCCceeeeCCCCC
Q 015484 109 AQKIRVDGEVNRARCMPQ--------------KPNLVGTKTSS------CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKE 168 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~--------------~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~ 168 (406)
....+|...+..+++.+. +. .++.++.+ +.|++||+... ....+.+|...
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~-~l~~~s~~~~~~~~~~i~i~d~~g~---------~~~~l~~~~~~ 180 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRT-RIAYVVQTNGGQFPYELRVSDYDGY---------NQFVVHRSPQP 180 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTC-EEEEEEECSSSSCCEEEEEEETTSC---------SCEEEEEESSC
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCC-EEEEEEecCCCCccceEEEEcCCCC---------CCEEEeCCCCc
Confidence 345678888888887751 43 35444443 79999999752 24667789999
Q ss_pred eeEEEecCCCCCeEEEecCCC---eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEE-EEecCCc--EEE
Q 015484 169 GYGLSWSPFKEGYLVSGSHDN---KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFG-SAGDDCQ--LMI 242 (406)
Q Consensus 169 v~~l~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~-~~~~dg~--i~i 242 (406)
+.+++|+|+|+ .|++++.++ .|++||+.+++. ..+..|...+.+++|+|+ ++.|+ +++.++. |++
T Consensus 181 v~~~~~Spdg~-~la~~s~~~~~~~i~~~d~~tg~~-------~~l~~~~~~~~~~~~spd-g~~la~~~~~~g~~~i~~ 251 (415)
T 2hqs_A 181 LMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAV-------RQVASFPRHNGAPAFSPD-GSKLAFALSKTGSLNLYV 251 (415)
T ss_dssp EEEEEECTTSS-EEEEEECTTSSCEEEEEETTTCCE-------EEEECCSSCEEEEEECTT-SSEEEEEECTTSSCEEEE
T ss_pred ceeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCcE-------EEeecCCCcccCEEEcCC-CCEEEEEEecCCCceEEE
Confidence 99999999998 999998875 999999987642 234457778999999994 55454 7766655 999
Q ss_pred EECCCCcccccccccCCCeeEEEecCCCCcEEEEEeC-CC--cEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEE
Q 015484 243 WDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS-DT--TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLA 319 (406)
Q Consensus 243 ~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~ 319 (406)
||+++++. ..+..+...+.+++|+|+++ .|++++. ++ .|.+||+.+.. ...+..+...+.+++|+|+++. |+
T Consensus 252 ~d~~~~~~-~~l~~~~~~~~~~~~spdg~-~l~~~s~~~g~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~spdG~~-l~ 326 (415)
T 2hqs_A 252 MDLASGQI-RQVTDGRSNNTEPTWFPDSQ-NLAFTSDQAGRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGKF-MV 326 (415)
T ss_dssp EETTTCCE-EECCCCSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTSSC--CEECCCSSSEEEEEEECTTSSE-EE
T ss_pred EECCCCCE-EeCcCCCCcccceEECCCCC-EEEEEECCCCCcEEEEEECCCCC--EEEEecCCCcccCeEECCCCCE-EE
Confidence 99988765 45666788899999999999 6666665 45 67777887654 4556667788999999999985 55
Q ss_pred EEeCC---CcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCC---cEEEEeCCCcc
Q 015484 320 SSADD---RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDN---TVQVWQMTDSI 393 (406)
Q Consensus 320 s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg---~i~iw~~~~~~ 393 (406)
+++.+ +.|.+||+.... . ..+..+. .+.+++|+|+|++ |++++.++ .|++|++..+.
T Consensus 327 ~~~~~~g~~~i~~~d~~~~~--------------~-~~l~~~~-~~~~~~~spdg~~-l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 327 MVSSNGGQQHIAKQDLATGG--------------V-QVLSSTF-LDETPSLAPNGTM-VIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp EEEECSSCEEEEEEETTTCC--------------E-EECCCSS-SCEEEEECTTSSE-EEEEEEETTEEEEEEEETTSCC
T ss_pred EEECcCCceEEEEEECCCCC--------------E-EEecCCC-CcCCeEEcCCCCE-EEEEEcCCCccEEEEEECCCCc
Confidence 55543 589999998621 1 2334443 7999999999994 66666665 79999998765
Q ss_pred cC
Q 015484 394 YR 395 (406)
Q Consensus 394 ~~ 395 (406)
..
T Consensus 390 ~~ 391 (415)
T 2hqs_A 390 KA 391 (415)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 129
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.93 E-value=2.7e-24 Score=200.54 Aligned_cols=213 Identities=15% Similarity=0.124 Sum_probs=159.4
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc--------CCCCCceeeeCCCCCeeEEEecCCCCCeEE----
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ--------DDCDPDLRLKGHDKEGYGLSWSPFKEGYLV---- 183 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~--------~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~---- 183 (406)
..++.+++++++ .++++++.++ ++||+......... ....+.. ...+...|.+++|+|++. +|+
T Consensus 37 ~~~n~lavs~~~-~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~l~~spdg~-~lav~~~ 112 (434)
T 2oit_A 37 ERSSLLAVSNKY-GLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGL-LVPMKFPIHHLALSCDNL-TLSACMM 112 (434)
T ss_dssp SCCBCEEEETTT-TEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCE-EECCSSCEEEEEECTTSC-EEEEEEE
T ss_pred CCccEEEEecCC-CEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccc-cccCCCcccEEEEcCCCC-EEEEEEe
Confidence 468999999988 5788888887 89987653211000 0011111 224667899999999998 888
Q ss_pred EecCCCeEEEEeCCCc-----cCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccC
Q 015484 184 SGSHDNKICLWDVSAL-----AQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHE 258 (406)
Q Consensus 184 s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 258 (406)
+|+.|+.|++||+.+. ...+.+..+..+.+|...|.+++|+|.++.+|++++.||.|++||++++........|.
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~ 192 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPST 192 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGG
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCC
Confidence 8999999999998765 11122223455667899999999999668999999999999999999886665566688
Q ss_pred CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCC-------CCCeEEEEEcCCCCCEEEEEeCCCc-----
Q 015484 259 KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSH-------TEEVFQVEWDPNHETVLASSADDRR----- 326 (406)
Q Consensus 259 ~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h-------~~~v~~i~~~p~~~~~l~s~~~dg~----- 326 (406)
..|++++|+|++. +|++|+.||.|++||++ +.. ...+..| ...|.+++|++++..+++.++.||.
T Consensus 193 ~~v~~v~wspdg~-~lasgs~dg~v~iwd~~-~~~-~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~ 269 (434)
T 2oit_A 193 VAVTSVCWSPKGK-QLAVGKQNGTVVQYLPT-LQE-KKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSP 269 (434)
T ss_dssp GCEEEEEECTTSS-CEEEEETTSCEEEECTT-CCE-EEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCC
T ss_pred CceeEEEEcCCCC-EEEEEcCCCcEEEEccC-Ccc-cccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCC
Confidence 8999999999998 89999999999999998 232 3333333 3379999999988644444555543
Q ss_pred -EEEEeCCCC
Q 015484 327 -LMVWDLNRI 335 (406)
Q Consensus 327 -i~iwd~~~~ 335 (406)
+++|+++..
T Consensus 270 ~v~i~~l~~~ 279 (434)
T 2oit_A 270 DVVMALLPKK 279 (434)
T ss_dssp EEEEEECCCT
T ss_pred ceEEEEeccC
Confidence 899999864
No 130
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=4.1e-23 Score=186.47 Aligned_cols=267 Identities=9% Similarity=0.147 Sum_probs=178.3
Q ss_pred CeEEEEEeecCCceeEEEEcCCCCcEEEEEeCC-CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEE
Q 015484 105 KVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSS-CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLV 183 (406)
Q Consensus 105 ~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 183 (406)
.+.....+.|...+.+++|+|+++ +|++++.+ +.|.+|++.... +.......+..+. .+.+++|+|+++ +|+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~s~dg~-~l~ 99 (343)
T 1ri6_A 27 ALTLTQVVDVPGQVQPMVVSPDKR-YLYVGVRPEFRVLAYRIAPDD----GALTFAAESALPG-SLTHISTDHQGQ-FVF 99 (343)
T ss_dssp CEEEEEEEECSSCCCCEEECTTSS-EEEEEETTTTEEEEEEECTTT----CCEEEEEEEECSS-CCSEEEECTTSS-EEE
T ss_pred cEEEeeeEecCCCCceEEECCCCC-EEEEeecCCCeEEEEEecCCC----CceeeccccccCC-CCcEEEEcCCCC-EEE
Confidence 355566778999999999999995 45555554 999999997211 0112233444444 788999999998 665
Q ss_pred Ee-cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe-cCCcEEEEECCC-Ccccc----ccc-
Q 015484 184 SG-SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG-DDCQLMIWDLRT-NQTQQ----RVK- 255 (406)
Q Consensus 184 s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg~i~i~d~~~-~~~~~----~~~- 255 (406)
++ ..++.|.+||+..+. .......+. ....+.+++|+|+ ++.+++++ .++.|.+||+.+ ++... .+.
T Consensus 100 ~~~~~~~~i~~~d~~~~~---~~~~~~~~~-~~~~~~~~~~s~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 174 (343)
T 1ri6_A 100 VGSYNAGNVSVTRLEDGL---PVGVVDVVE-GLDGCHSANISPD-NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT 174 (343)
T ss_dssp EEETTTTEEEEEEEETTE---EEEEEEEEC-CCTTBCCCEECTT-SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC
T ss_pred EEecCCCeEEEEECCCCc---ccccccccc-CCCCceEEEECCC-CCEEEEecCCCCEEEEEEecCCCceeeeccccccc
Confidence 55 458999999996321 112223333 3346889999994 55555554 899999999987 54321 222
Q ss_pred ccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCc---EEec---CC---CCCeEEEEEcCCCCCEEEEEeCCCc
Q 015484 256 AHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPL---HILS---SH---TEEVFQVEWDPNHETVLASSADDRR 326 (406)
Q Consensus 256 ~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~---~h---~~~v~~i~~~p~~~~~l~s~~~dg~ 326 (406)
.....+..++|+|+++.+++++..++.|.+||+......+ .... .. ...+..++|+|+++.+++++..++.
T Consensus 175 ~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~ 254 (343)
T 1ri6_A 175 VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL 254 (343)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE
T ss_pred CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCE
Confidence 2345788899999999555566688999999996422111 1121 11 2357789999999876667778999
Q ss_pred EEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC--CCccc
Q 015484 327 LMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM--TDSIY 394 (406)
Q Consensus 327 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~--~~~~~ 394 (406)
|.+||+..... ....+.....+.. +.+++|+|+++++++++..++.|.+|++ .++.+
T Consensus 255 i~v~d~~~~~~----------~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 255 ITVFSVSEDGS----------VLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp EEEEEECTTSC----------CEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred EEEEEEcCCCC----------ceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCcee
Confidence 99999973111 1233334444444 8999999999965555447899999955 45543
No 131
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=1.7e-22 Score=178.24 Aligned_cols=242 Identities=11% Similarity=0.108 Sum_probs=171.2
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCC-ccccccCCCCCceeeeCC-CCCeeEEEecCCCCCeEEEec
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAK-QAEKQQDDCDPDLRLKGH-DKEGYGLSWSPFKEGYLVSGS 186 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~ 186 (406)
.....|.+.|.+++|+|++ .+|++++ ++.|++||+.. ... ......| ...+.+++|+|+++ +|++++
T Consensus 35 ~~~~~~~~~v~~~~~spdg-~~l~~~~-~~~i~~~d~~~~~~~--------~~~~~~~~~~~~~~~~~spdg~-~l~~~~ 103 (297)
T 2ojh_A 35 RVVWQTPELFEAPNWSPDG-KYLLLNS-EGLLYRLSLAGDPSP--------EKVDTGFATICNNDHGISPDGA-LYAISD 103 (297)
T ss_dssp EEEEEESSCCEEEEECTTS-SEEEEEE-TTEEEEEESSSCCSC--------EECCCTTCCCBCSCCEECTTSS-EEEEEE
T ss_pred eeeccCCcceEeeEECCCC-CEEEEEc-CCeEEEEeCCCCCCc--------eEeccccccccccceEECCCCC-EEEEEE
Confidence 4566789999999999999 5677765 78999999987 422 2333344 46789999999998 888887
Q ss_pred --CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCC-CcccccccccCCCeeE
Q 015484 187 --HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT-NQTQQRVKAHEKEVNY 263 (406)
Q Consensus 187 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~ 263 (406)
.++...+|.++..... ...+.. ...+..++|+|++..++++++.++.+++|+++. ......+..+...+.+
T Consensus 104 ~~~~~~~~l~~~~~~~~~-----~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 177 (297)
T 2ojh_A 104 KVEFGKSAIYLLPSTGGT-----PRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDG 177 (297)
T ss_dssp CTTTSSCEEEEEETTCCC-----CEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEE
T ss_pred eCCCCcceEEEEECCCCc-----eEEeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCcccc
Confidence 3345555555322111 122222 334888999995444555888999999998643 2334455567788999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCC-----------CcEEEEeC
Q 015484 264 LSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADD-----------RRLMVWDL 332 (406)
Q Consensus 264 i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d-----------g~i~iwd~ 332 (406)
++|+|+++.+++++..++.+.+|++......+..+..|...+..++|+|+++. |++++.+ +.|.+||+
T Consensus 178 ~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~-l~~~~~~~~~~~~~~~~~~~l~~~d~ 256 (297)
T 2ojh_A 178 PDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDK-VVFVSYDADVFDHPRDLDVRVQLMDM 256 (297)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSE-EEEEEEETTCCSCCSSEEEEEEEEET
T ss_pred ceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCE-EEEEEcCCCCCcccccCceEEEEEec
Confidence 99999999444444468999999987444447778888888999999999985 6555544 56999998
Q ss_pred CCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCC
Q 015484 333 NRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADD 381 (406)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~d 381 (406)
.... ...+....+|...+..++|+|++++ |++++.+
T Consensus 257 ~~~~------------~~~~~~~~~~~~~~~~~~~spdg~~-l~~~~~~ 292 (297)
T 2ojh_A 257 DGGN------------VETLFDLFGGQGTMNSPNWSPDGDE-FAYVRYF 292 (297)
T ss_dssp TSCS------------CEEEEEEEESTTTSCSCCBCTTSSE-EEEEEEC
T ss_pred CCCC------------ceeeeccCCCCcccccceECCCCCE-EEEEEec
Confidence 7622 2344455567888999999999995 4444443
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=5.4e-22 Score=184.27 Aligned_cols=224 Identities=13% Similarity=0.084 Sum_probs=171.2
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCC---eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEE-E
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSC---EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLV-S 184 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~-s 184 (406)
.....|.+.|.+++|+|++ ..||+++.++ .|++||+.+.. ...+..|...+.+++|+|+|+ .|+ +
T Consensus 172 ~~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~tg~---------~~~l~~~~~~~~~~~~spdg~-~la~~ 240 (415)
T 2hqs_A 172 FVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGA---------VRQVASFPRHNGAPAFSPDGS-KLAFA 240 (415)
T ss_dssp EEEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCC---------EEEEECCSSCEEEEEECTTSS-EEEEE
T ss_pred EEEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCc---------EEEeecCCCcccCEEEcCCCC-EEEEE
Confidence 3445789999999999999 5788888775 99999998732 245677888999999999998 666 7
Q ss_pred ecCCCe--EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec-CC--cEEEEECCCCcccccccccCC
Q 015484 185 GSHDNK--ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD-DC--QLMIWDLRTNQTQQRVKAHEK 259 (406)
Q Consensus 185 ~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~ 259 (406)
++.++. |.+||+.++.. ..+..|...+.+++|+| +++.|+.++. ++ .|.+||+.+++. ..+..+..
T Consensus 241 ~~~~g~~~i~~~d~~~~~~-------~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~ 311 (415)
T 2hqs_A 241 LSKTGSLNLYVMDLASGQI-------RQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGS 311 (415)
T ss_dssp ECTTSSCEEEEEETTTCCE-------EECCCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSS
T ss_pred EecCCCceEEEEECCCCCE-------EeCcCCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCC
Confidence 766654 99999987532 33456778899999999 5666666664 45 678889887764 34445667
Q ss_pred CeeEEEecCCCCcEEEEEeCC---CcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC---cEEEEeCC
Q 015484 260 EVNYLSFNPYNEWVLATASSD---TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDR---RLMVWDLN 333 (406)
Q Consensus 260 ~v~~i~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg---~i~iwd~~ 333 (406)
.+.+++|+|+|+ +|++++.+ ..|.+||+.+.. ...+..+. .+.+++|+|+++. |++++.++ .|.+||+.
T Consensus 312 ~~~~~~~spdG~-~l~~~~~~~g~~~i~~~d~~~~~--~~~l~~~~-~~~~~~~spdg~~-l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 312 QNQDADVSSDGK-FMVMVSSNGGQQHIAKQDLATGG--VQVLSSTF-LDETPSLAPNGTM-VIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp EEEEEEECTTSS-EEEEEEECSSCEEEEEEETTTCC--EEECCCSS-SCEEEEECTTSSE-EEEEEEETTEEEEEEEETT
T ss_pred cccCeEECCCCC-EEEEEECcCCceEEEEEECCCCC--EEEecCCC-CcCCeEEcCCCCE-EEEEEcCCCccEEEEEECC
Confidence 889999999999 66666543 489999998755 34565554 8999999999984 66666665 79999987
Q ss_pred CCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCC
Q 015484 334 RIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDP 372 (406)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 372 (406)
. .....+.+|.+.|.+++|+|...
T Consensus 387 g---------------~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 387 G---------------RFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp S---------------CCEEECCCSSSEEEEEEECCCCC
T ss_pred C---------------CcEEEeeCCCCCCcCCccccccc
Confidence 5 44556678889999999999754
No 133
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=1.7e-21 Score=175.25 Aligned_cols=251 Identities=8% Similarity=0.051 Sum_probs=176.1
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCC-ceeeeCCCCCeeEEEecCCCCCeEEEecCCC---
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDP-DLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN--- 189 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--- 189 (406)
+...+ .++|+|+++.+++++..++.|++||..+. .. ...+..+..+..+++|+|+++ +|+++..++
T Consensus 39 ~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~--------~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~ 108 (331)
T 3u4y_A 39 GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLE--------PPKVVAIQEGQSSMADVDITPDDQ-FAVTVTGLNHPF 108 (331)
T ss_dssp CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSS--------SCEEEEEEECSSCCCCEEECTTSS-EEEECCCSSSSC
T ss_pred cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCC--------ceeEEecccCCCCccceEECCCCC-EEEEecCCCCcc
Confidence 34556 99999999656666666899999999873 22 445556666666699999998 888665553
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCc-EEEEECCCCcccc----cccccCCCeeEE
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQ-LMIWDLRTNQTQQ----RVKAHEKEVNYL 264 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~-i~i~d~~~~~~~~----~~~~~~~~v~~i 264 (406)
.|.+||+.+++.. ..+. ......+++|+|++..++++...++. |.+|++.....+. ...........+
T Consensus 109 ~i~v~d~~~~~~~------~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 181 (331)
T 3u4y_A 109 NMQSYSFLKNKFI------STIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNI 181 (331)
T ss_dssp EEEEEETTTTEEE------EEEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEE
T ss_pred cEEEEECCCCCeE------EEEE-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccce
Confidence 8999999876432 2222 34456899999965567777777788 9999987644321 111234567899
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCCCC--cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccc
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMRKMTVP--LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLEL 342 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 342 (406)
+|+|+++.+++++..++.|.+||+.+.+.. +..+. ....+..++|+|+++.++++...++.|.+||+.+...
T Consensus 182 ~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~----- 255 (331)
T 3u4y_A 182 TFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL----- 255 (331)
T ss_dssp EECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE-----
T ss_pred EECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce-----
Confidence 999999855666667889999999875531 34444 3467789999999986556666788999999976321
Q ss_pred cccCCCCeeEEEecCC----C---CCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 343 DAEDGPPELLFSHGGH----K---AKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 343 ~~~~~~~~~~~~~~~h----~---~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
..+.....+ . .....++|+|+++++++++..++.|.+|++.+...
T Consensus 256 -------~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 256 -------SFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp -------EEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred -------eeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 111111111 1 12356899999997667777778999999987654
No 134
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.90 E-value=1.3e-20 Score=171.84 Aligned_cols=298 Identities=11% Similarity=0.060 Sum_probs=191.7
Q ss_pred eeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCC--
Q 015484 60 AVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSS-- 137 (406)
Q Consensus 60 ~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~d-- 137 (406)
..+++++|+++.. ....|+++.+... ++.+...... +...+..++|+|++ .+|++++.+
T Consensus 12 ~~~~~~vg~y~~~-~~~~i~~~~~d~~----------------~g~~~~~~~~-~~~~p~~l~~spdg-~~l~~~~~~~~ 72 (361)
T 3scy_A 12 SELTMLVGTYTSG-NSKGIYTFRFNEE----------------TGESLPLSDA-EVANPSYLIPSADG-KFVYSVNEFSK 72 (361)
T ss_dssp GEEEEEEEECCSS-SCCEEEEEEEETT----------------TCCEEEEEEE-ECSCCCSEEECTTS-SEEEEEECCSS
T ss_pred CceEEEEEeccCC-CCCCEEEEEEeCC----------------CCCEEEeecc-cCCCCceEEECCCC-CEEEEEEccCC
Confidence 3578899999854 4577888877622 1345555555 78889999999999 466666664
Q ss_pred --CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec-CCCeEEEEeCCCccCCceeeeeeeee--
Q 015484 138 --CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS-HDNKICLWDVSALAQDKVIDAMHVYE-- 212 (406)
Q Consensus 138 --g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~-- 212 (406)
+.|.+|++..... ....+.....+......+++ +++ +|++++ .++.|.+|++........+.......
T Consensus 73 ~~~~v~~~~~~~~~g----~~~~~~~~~~~~~~p~~~~~--dg~-~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~ 145 (361)
T 3scy_A 73 DQAAVSAFAFDKEKG----TLHLLNTQKTMGADPCYLTT--NGK-NIVTANYSGGSITVFPIGQDGALLPASDVIEFKGS 145 (361)
T ss_dssp TTCEEEEEEEETTTT----EEEEEEEEECSSSCEEEEEE--CSS-EEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCC
T ss_pred CCCcEEEEEEeCCCC----cEEEeeEeccCCCCcEEEEE--CCC-EEEEEECCCCEEEEEEeCCCCcCcccceeEEccCC
Confidence 7999999876311 11223344445566777888 566 555554 68899999997543222111111111
Q ss_pred ------ccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc------c------cc-ccccCCCeeEEEecCCCCcE
Q 015484 213 ------AHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT------Q------QR-VKAHEKEVNYLSFNPYNEWV 273 (406)
Q Consensus 213 ------~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~------~------~~-~~~~~~~v~~i~~~~~~~~~ 273 (406)
.+...+.+++|+|++..++++...++.|.+|++..... + .. ..........++|+|+++ +
T Consensus 146 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~-~ 224 (361)
T 3scy_A 146 GPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGK-F 224 (361)
T ss_dssp CSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSS-E
T ss_pred CCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCC-E
Confidence 11234688999995444556666689999999875442 1 11 122345678999999999 5
Q ss_pred EEEEe-CCCcEEEEeCCCCCC-CcEEe---cCCCCCeEEEEEcCCCCCEEEEEeC-CCcEEEEeCCCCCcccccccccCC
Q 015484 274 LATAS-SDTTVALFDMRKMTV-PLHIL---SSHTEEVFQVEWDPNHETVLASSAD-DRRLMVWDLNRIGDEQLELDAEDG 347 (406)
Q Consensus 274 l~~~~-~dg~i~vwd~~~~~~-~~~~~---~~h~~~v~~i~~~p~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~ 347 (406)
+++++ .++.|.+||+.++.. .+..+ ..+......++|+|++++++++... ++.|.+|++.... +
T Consensus 225 l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~----------g 294 (361)
T 3scy_A 225 AYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETN----------G 294 (361)
T ss_dssp EEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTT----------C
T ss_pred EEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCC----------C
Confidence 55555 688999999985431 12222 2334567899999999864455555 6899999986311 1
Q ss_pred CCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC--CCcccC
Q 015484 348 PPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM--TDSIYR 395 (406)
Q Consensus 348 ~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~--~~~~~~ 395 (406)
....+..... ...+.+++|+|+|++++++...++.|.+|++ .++.+.
T Consensus 295 ~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~ 343 (361)
T 3scy_A 295 TLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLT 343 (361)
T ss_dssp CEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred cEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEe
Confidence 1223333333 4568899999999965555557899999654 456543
No 135
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.90 E-value=2.3e-21 Score=185.65 Aligned_cols=265 Identities=9% Similarity=0.103 Sum_probs=192.0
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeC--CCccccccCCCCCceeeeCCCCCeeEEEecC----CCCCeE
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDC--AKQAEKQQDDCDPDLRLKGHDKEGYGLSWSP----FKEGYL 182 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~--~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~~~~l 182 (406)
...+.....+..++|+|++ .+|++++.+++|.+||+ .+ ......+. +...+..++|+| +|+ +|
T Consensus 172 ~~~i~~g~~~~~v~~spdg-~~l~v~~~d~~V~v~D~~~~t--------~~~~~~i~-~g~~p~~va~sp~~~~dg~-~l 240 (543)
T 1nir_A 172 VKVIDTGYAVHISRMSASG-RYLLVIGRDARIDMIDLWAKE--------PTKVAEIK-IGIEARSVESSKFKGYEDR-YT 240 (543)
T ss_dssp EEEEECSTTEEEEEECTTS-CEEEEEETTSEEEEEETTSSS--------CEEEEEEE-CCSEEEEEEECCSTTCTTT-EE
T ss_pred EEEEecCcccceEEECCCC-CEEEEECCCCeEEEEECcCCC--------CcEEEEEe-cCCCcceEEeCCCcCCCCC-EE
Confidence 3344422238999999999 57888889999999999 44 22345555 455679999999 998 88
Q ss_pred EEecC-CCeEEEEeCCCccCCceeeeeee-e---eccC-ccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccc--cc
Q 015484 183 VSGSH-DNKICLWDVSALAQDKVIDAMHV-Y---EAHE-SVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ--RV 254 (406)
Q Consensus 183 ~s~~~-dg~i~iwd~~~~~~~~~~~~~~~-~---~~~~-~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~ 254 (406)
++++. +++|.+||..+.+....+..... . ..|. ..+..+.++|+++.++++...++.|.+||+.+.+.+. .+
T Consensus 241 ~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i 320 (543)
T 1nir_A 241 IAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI 320 (543)
T ss_dssp EEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE
T ss_pred EEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe
Confidence 88774 89999999887654332221000 0 0022 3688999999778888888999999999998876544 33
Q ss_pred cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC----CCCCeEEEEEcCCCCCEEEEEe-CCCcEEE
Q 015484 255 KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS----HTEEVFQVEWDPNHETVLASSA-DDRRLMV 329 (406)
Q Consensus 255 ~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----h~~~v~~i~~~p~~~~~l~s~~-~dg~i~i 329 (406)
. +...+..+.|+|+++++++++..+++|.+||..+++. +..+.. |.+....+ ++|++..+++++. .|++|.+
T Consensus 321 ~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l-~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v 397 (543)
T 1nir_A 321 G-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRL-SALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISL 397 (543)
T ss_dssp E-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEE-EEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEE
T ss_pred c-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeE-EEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEE
Confidence 3 4567888999999995556666788999999998654 555543 65544444 5787555778876 6899999
Q ss_pred EeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEe-------CCCcEEEEeCCCcccC
Q 015484 330 WDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVA-------DDNTVQVWQMTDSIYR 395 (406)
Q Consensus 330 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~-------~dg~i~iw~~~~~~~~ 395 (406)
||+...+.. ....+++..+.+|...+..++++|++++ |++++ .++.|.+||+.+....
T Consensus 398 ~d~~~~~~~-------~~~~~~v~~l~~~g~~~~~v~~~pdg~~-l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 398 IGTDPKNHP-------QYAWKKVAELQGQGGGSLFIKTHPKSSH-LYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp EECCTTTCT-------TTBTSEEEEEECSCSCCCCEECCTTCCE-EEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred EEeCCCCCc-------hhcCeEEEEEEcCCCCceEEEcCCCCCc-EEEecCCCCCcccCceEEEEECCCCCCC
Confidence 999762211 1114677888888888999999999994 66665 2679999999987543
No 136
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=3e-21 Score=173.70 Aligned_cols=245 Identities=9% Similarity=0.031 Sum_probs=175.0
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC-CCeEEEEeCCCc
Q 015484 121 ARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH-DNKICLWDVSAL 199 (406)
Q Consensus 121 i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-dg~i~iwd~~~~ 199 (406)
..|.+++..++++++.++.|.+||..+.. ....+..+...+ +++|+|+++ ++++++. ++.|.+||+.++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~--------~~~~~~~~~~~~-~~~~s~dg~-~l~~~~~~~~~i~~~d~~~~ 72 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLE--------ILNQITLGYDFV-DTAITSDCS-NVVVTSDFCQTLVQIETQLE 72 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCC--------EEEEEECCCCEE-EEEECSSSC-EEEEEESTTCEEEEEECSSS
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccc--------eeeeEEccCCcc-eEEEcCCCC-EEEEEeCCCCeEEEEECCCC
Confidence 34666666778999999999999998742 244455556666 999999998 5555544 899999999876
Q ss_pred cCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC---cEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEE
Q 015484 200 AQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC---QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLAT 276 (406)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~ 276 (406)
... ...+..+..+..+++|+| ++++++++..++ .|.+||+.+++.+..+.. .....+++|+|+++.++++
T Consensus 73 ~~~-----~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~ 145 (331)
T 3u4y_A 73 PPK-----VVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILI 145 (331)
T ss_dssp SCE-----EEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEE
T ss_pred cee-----EEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEE
Confidence 430 233344555555599999 566666555443 899999999887776653 4456899999999866677
Q ss_pred EeCCCc-EEEEeCCCCCCCc---EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeE
Q 015484 277 ASSDTT-VALFDMRKMTVPL---HILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELL 352 (406)
Q Consensus 277 ~~~dg~-i~vwd~~~~~~~~---~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (406)
...++. |.+|++....... .........+..++|+|+++.+++++..++.|.+||+..... ...+
T Consensus 146 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~-----------~~~~ 214 (331)
T 3u4y_A 146 DRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN-----------ITLL 214 (331)
T ss_dssp EETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS-----------CEEE
T ss_pred ecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc-----------ccee
Confidence 677788 9999998644311 122234456899999999987677777899999999976321 0113
Q ss_pred EEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 353 FSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 353 ~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
..+.. ...+..++|+|+|++++++...++.|.+||+.++..
T Consensus 215 ~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 215 NAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp EEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred eeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence 33333 356789999999997666666688899999998765
No 137
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=4e-21 Score=174.26 Aligned_cols=251 Identities=10% Similarity=0.081 Sum_probs=180.7
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeC------CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEE
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTS------SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVS 184 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 184 (406)
.......+..++|+|+++.++++... ++.|.+||..+.. ....+.. ...+.+++|+|+++..+++
T Consensus 36 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~--------~~~~~~~-~~~~~~~~~s~dg~~l~v~ 106 (353)
T 3vgz_A 36 RKAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE--------VTQAIHN-DLKPFGATINNTTQTLWFG 106 (353)
T ss_dssp EEEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC--------EEEEEEE-SSCCCSEEEETTTTEEEEE
T ss_pred hhhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe--------EEEEEec-CCCcceEEECCCCCEEEEE
Confidence 34556778999999998554444433 6789999998732 2333332 3457789999998845556
Q ss_pred ecCCCeEEEEeCCCccCCceeeeeeeeeccC---------ccEEEEEeeCCCCCEEEEE-ecCCcEEEEECCCCcccccc
Q 015484 185 GSHDNKICLWDVSALAQDKVIDAMHVYEAHE---------SVVEDVSWHLKNENLFGSA-GDDCQLMIWDLRTNQTQQRV 254 (406)
Q Consensus 185 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---------~~i~~i~~~p~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~ 254 (406)
+..++.|.+||+.+++... .+..+. ..+.+++|+|++..++++. +.++.|.+||+.+++.+..+
T Consensus 107 ~~~~~~v~~~d~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~ 180 (353)
T 3vgz_A 107 NTVNSAVTAIDAKTGEVKG------RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAI 180 (353)
T ss_dssp ETTTTEEEEEETTTCCEEE------EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred ecCCCEEEEEeCCCCeeEE------EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEe
Confidence 6668999999998865322 222221 1278899999544445444 35889999999998887777
Q ss_pred cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC----CCCCeEEEEEcCCCCCEEEEEeCCCcEEEE
Q 015484 255 KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS----HTEEVFQVEWDPNHETVLASSADDRRLMVW 330 (406)
Q Consensus 255 ~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----h~~~v~~i~~~p~~~~~l~s~~~dg~i~iw 330 (406)
..+...+.+++|+|+++ .+++++.++.|.+||+.+.+. +..+.. +...+..++|+|+++.++++...++.|.+|
T Consensus 181 ~~~~~~~~~~~~s~dg~-~l~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~ 258 (353)
T 3vgz_A 181 QNTGKMSTGLALDSEGK-RLYTTNADGELITIDTADNKI-LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVV 258 (353)
T ss_dssp CCCCTTCCCCEEETTTT-EEEEECTTSEEEEEETTTTEE-EEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEE
T ss_pred cCCCCccceEEECCCCC-EEEEEcCCCeEEEEECCCCeE-EEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEE
Confidence 65566688999999999 788888899999999988654 444433 456788999999998766666667999999
Q ss_pred eCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 331 DLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 331 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
|+.+. +.+....... ...++|+|++++++++...++.|.+||+.++..
T Consensus 259 d~~~~--------------~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~ 306 (353)
T 3vgz_A 259 DTRNG--------------NILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV 306 (353)
T ss_dssp ETTTC--------------CEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred ECCCC--------------cEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeE
Confidence 99762 2222222222 367999999997677776899999999987654
No 138
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.89 E-value=1.3e-21 Score=172.45 Aligned_cols=228 Identities=11% Similarity=0.067 Sum_probs=164.9
Q ss_pred EEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCC-ccCCceeeeeeee
Q 015484 133 TKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSA-LAQDKVIDAMHVY 211 (406)
Q Consensus 133 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~ 211 (406)
.++.++.|++||+.... ...+..|...+.+++|+|+++ +|++++ ++.|.+||+.+ +... ...
T Consensus 17 ~~~~~~~i~~~d~~~~~---------~~~~~~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~------~~~ 79 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRK---------MRVVWQTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPE------KVD 79 (297)
T ss_dssp -CCCCEEEEEEETTTTE---------EEEEEEESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCE------ECC
T ss_pred CCCcceeEEEEeCCCCc---------eeeeccCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCce------Eec
Confidence 44678999999998732 234566888999999999998 888876 78999999987 5431 222
Q ss_pred ecc-CccEEEEEeeCCCCCEEEEEe--cCCcEEE--EECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEE
Q 015484 212 EAH-ESVVEDVSWHLKNENLFGSAG--DDCQLMI--WDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALF 286 (406)
Q Consensus 212 ~~~-~~~i~~i~~~p~~~~~l~~~~--~dg~i~i--~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vw 286 (406)
..+ ...+.+++|+| +++.+++++ .++...+ +++.++. ...+.. ...+..++|+|+++.++++++.++.+.+|
T Consensus 80 ~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~ 156 (297)
T 2ojh_A 80 TGFATICNNDHGISP-DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIY 156 (297)
T ss_dssp CTTCCCBCSCCEECT-TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred cccccccccceEECC-CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeec-CCCccceEECCCCCEEEEEECCCCceEEE
Confidence 233 36789999999 677777777 3344444 4555444 333332 33488999999999555588889999999
Q ss_pred eCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEE
Q 015484 287 DMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFS 366 (406)
Q Consensus 287 d~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 366 (406)
+++........+..+...+.+++|+|+++.+++++..++.+.||++.... .....+..|...+..++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~-------------~~~~~~~~~~~~~~~~~ 223 (297)
T 2ojh_A 157 SMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG-------------SSVERITDSAYGDWFPH 223 (297)
T ss_dssp EEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-------------SCEEECCCCSEEEEEEE
T ss_pred EEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC-------------CCcEEEecCCcccCCeE
Confidence 97543444667778888999999999998655555569999999986311 22344456667789999
Q ss_pred eCCCCCcEEEEEeCC-----------CcEEEEeCCCccc
Q 015484 367 WNKNDPWVISSVADD-----------NTVQVWQMTDSIY 394 (406)
Q Consensus 367 ~s~~~~~~l~s~~~d-----------g~i~iw~~~~~~~ 394 (406)
|+|++++ |+.++.+ +.|.+|++.++..
T Consensus 224 ~s~dg~~-l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 224 PSPSGDK-VVFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp ECTTSSE-EEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred ECCCCCE-EEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 9999995 5555544 5699999988754
No 139
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=4e-22 Score=185.82 Aligned_cols=213 Identities=16% Similarity=0.227 Sum_probs=152.2
Q ss_pred CCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccC--------Cceee-eeeeeeccCccEEEEEeeCCCCCEEE----E
Q 015484 167 KEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQ--------DKVID-AMHVYEAHESVVEDVSWHLKNENLFG----S 233 (406)
Q Consensus 167 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~-~~~~~~~~~~~i~~i~~~p~~~~~l~----~ 233 (406)
..+..+++++.+. ++++++.++ +++|+...... ..... .......+...|.+++|+| ++++|+ +
T Consensus 37 ~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav~~~s 113 (434)
T 2oit_A 37 ERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSACMMS 113 (434)
T ss_dssp SCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEEEEEE
T ss_pred CCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-CCCEEEEEEec
Confidence 4578999999887 999998888 88887643111 00000 0001123566899999999 567777 7
Q ss_pred EecCCcEEEEECCCC--------cc---cccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCC
Q 015484 234 AGDDCQLMIWDLRTN--------QT---QQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHT 302 (406)
Q Consensus 234 ~~~dg~i~i~d~~~~--------~~---~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~ 302 (406)
++.|+.|++||++++ +. ...+.+|...|.+++|+|++..+|++++.||.|++||+++... +.....|.
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~-~~~~~~~~ 192 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK-VCATLPST 192 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE-EEEEECGG
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc-eeeccCCC
Confidence 888999999998765 21 2344668999999999998544999999999999999998643 44566788
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCC
Q 015484 303 EEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDN 382 (406)
Q Consensus 303 ~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg 382 (406)
..|.+++|+|+++ +|++|+.||.|++||++. .. ...... +.. ....|...|.+++|++++.++++.++.||
T Consensus 193 ~~v~~v~wspdg~-~lasgs~dg~v~iwd~~~-~~-~~~~~~---~~~---~~~~~~~~v~~v~w~~~~~~l~~~~~~dg 263 (434)
T 2oit_A 193 VAVTSVCWSPKGK-QLAVGKQNGTVVQYLPTL-QE-KKVIPC---PPF---YESDHPVRVLDVLWIGTYVFAIVYAAADG 263 (434)
T ss_dssp GCEEEEEECTTSS-CEEEEETTSCEEEECTTC-CE-EEEECC---CTT---CCTTSCEEEEEEEEEETTEEEEEEEETTC
T ss_pred CceeEEEEcCCCC-EEEEEcCCCcEEEEccCC-cc-cccccC---Ccc---cCCCCceeEEEEEEecCceEEEEEccCCC
Confidence 9999999999997 599999999999999872 11 100000 000 00123447999999998885555555554
Q ss_pred c------EEEEeCCCc
Q 015484 383 T------VQVWQMTDS 392 (406)
Q Consensus 383 ~------i~iw~~~~~ 392 (406)
. +++|++...
T Consensus 264 ~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 264 TLETSPDVVMALLPKK 279 (434)
T ss_dssp CSSSCCEEEEEECCCT
T ss_pred ccCCCCceEEEEeccC
Confidence 3 899999865
No 140
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.89 E-value=4.2e-21 Score=183.78 Aligned_cols=236 Identities=13% Similarity=0.051 Sum_probs=176.7
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeC--CCc
Q 015484 122 RCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV--SAL 199 (406)
Q Consensus 122 ~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~--~~~ 199 (406)
.++|++ .++++++.+++|.+||..+. +....+..+.. +.+++|+|+++ +|++++.|++|.+||+ .++
T Consensus 144 ~~~p~~-~~~vs~~~d~~V~v~D~~t~--------~~~~~i~~g~~-~~~v~~spdg~-~l~v~~~d~~V~v~D~~~~t~ 212 (543)
T 1nir_A 144 DLDLPN-LFSVTLRDAGQIALVDGDSK--------KIVKVIDTGYA-VHISRMSASGR-YLLVIGRDARIDMIDLWAKEP 212 (543)
T ss_dssp CCCGGG-EEEEEEGGGTEEEEEETTTC--------CEEEEEECSTT-EEEEEECTTSC-EEEEEETTSEEEEEETTSSSC
T ss_pred ccCCCC-EEEEEEcCCCeEEEEECCCc--------eEEEEEecCcc-cceEEECCCCC-EEEEECCCCeEEEEECcCCCC
Confidence 378877 78999999999999999873 33556663333 88999999999 9999999999999999 553
Q ss_pred cCCceeeeeeeeeccCccEEEEEeeC----CCCCEEEEEe-cCCcEEEEECCCCccccccccc-----------CCCeeE
Q 015484 200 AQDKVIDAMHVYEAHESVVEDVSWHL----KNENLFGSAG-DDCQLMIWDLRTNQTQQRVKAH-----------EKEVNY 263 (406)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~i~~i~~~p----~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~-----------~~~v~~ 263 (406)
+ .+..+. +...+..++|+| ++ +++++++ .++.|.+||..+++.+..+..+ ...+.+
T Consensus 213 ~------~~~~i~-~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~ 284 (543)
T 1nir_A 213 T------KVAEIK-IGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAA 284 (543)
T ss_dssp E------EEEEEE-CCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEE
T ss_pred c------EEEEEe-cCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEE
Confidence 2 223344 355689999998 65 4455555 6899999999999887776431 236889
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccccc
Q 015484 264 LSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELD 343 (406)
Q Consensus 264 i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 343 (406)
+.++|++..++++...++.|.+||+...+........+...+.++.|+|+++++++++..+++|.+||+.+
T Consensus 285 i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t--------- 355 (543)
T 1nir_A 285 IIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD--------- 355 (543)
T ss_dssp EEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT---------
T ss_pred EEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCC---------
Confidence 99999988788888889999999998765433222245677889999999987677777799999999987
Q ss_pred ccCCCCeeEEEecC----CCCCeeeEEeCCCCCcEEEEEe-CCCcEEEEeCCC
Q 015484 344 AEDGPPELLFSHGG----HKAKISDFSWNKNDPWVISSVA-DDNTVQVWQMTD 391 (406)
Q Consensus 344 ~~~~~~~~~~~~~~----h~~~v~~~~~s~~~~~~l~s~~-~dg~i~iw~~~~ 391 (406)
.+++..+.. |......+ ++|++..+++++. .|+.|.+|++.+
T Consensus 356 -----g~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 356 -----RRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp -----TEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred -----CeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCC
Confidence 233433332 44333333 4677444777775 689999999987
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=6.2e-21 Score=172.14 Aligned_cols=240 Identities=10% Similarity=0.113 Sum_probs=161.4
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC-CeEEEEeCCCccCCceeee
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD-NKICLWDVSALAQDKVIDA 207 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~ 207 (406)
.++++++.++.|++|++.... ... ......|...+.+++|+|+++ +|++++.+ +.|.+|++.... ..+..
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~v~~~~~~~~~--~~~~~ 76 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEG-----ALT-LTQVVDVPGQVQPMVVSPDKR-YLYVGVRPEFRVLAYRIAPDD--GALTF 76 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTS-----CEE-EEEEEECSSCCCCEEECTTSS-EEEEEETTTTEEEEEEECTTT--CCEEE
T ss_pred EEEEeCCCCCeEEEEEECCCC-----cEE-EeeeEecCCCCceEEECCCCC-EEEEeecCCCeEEEEEecCCC--Cceee
Confidence 456666889999999996411 111 122234677889999999998 77777776 999999997211 11222
Q ss_pred eeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECC---CCcccccccccCCCeeEEEecCCCCcEEEEEe-CCCcE
Q 015484 208 MHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR---TNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS-SDTTV 283 (406)
Q Consensus 208 ~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~dg~i 283 (406)
+..+..+. .+..++|+|++..+++++..++.|.+||+. ..+....+. ....+.+++|+|+++ .+++++ .++.|
T Consensus 77 ~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-~l~~~~~~~~~v 153 (343)
T 1ri6_A 77 AAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNR-TLWVPALKQDRI 153 (343)
T ss_dssp EEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSS-EEEEEEGGGTEE
T ss_pred ccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCC-EEEEecCCCCEE
Confidence 23333333 788999999544444555568999999994 333334443 334588999999998 555555 88999
Q ss_pred EEEeCCCCCCCcE----Eec-CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEec--
Q 015484 284 ALFDMRKMTVPLH----ILS-SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG-- 356 (406)
Q Consensus 284 ~vwd~~~~~~~~~----~~~-~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-- 356 (406)
.+||+........ ... .....+..++|+|+++.+++++..++.|.+|++...... ........
T Consensus 154 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~----------~~~~~~~~~~ 223 (343)
T 1ri6_A 154 CLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN----------IECVQTLDMM 223 (343)
T ss_dssp EEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSC----------CEEEEEEECS
T ss_pred EEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc----------EEEEeecccc
Confidence 9999986332111 222 234578899999999866666668999999999642111 11111111
Q ss_pred --C--CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 357 --G--HKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 357 --~--h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
+ ....+..++|+|+++++++++..++.|.+|++.
T Consensus 224 ~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 224 PENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp CTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 1 123567899999999766677789999999998
No 142
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.88 E-value=2.6e-21 Score=193.22 Aligned_cols=241 Identities=11% Similarity=0.135 Sum_probs=171.0
Q ss_pred CCceeEEEEcCCCCcEEEEEeC-CC-----eEEEEeCCCccccccCCCCCceeeeCCC----------------------
Q 015484 115 DGEVNRARCMPQKPNLVGTKTS-SC-----EVYVFDCAKQAEKQQDDCDPDLRLKGHD---------------------- 166 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~-dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~h~---------------------- 166 (406)
...+..++|+|+| ..|++++. ++ .|++||+.+... ...+..+.
T Consensus 36 ~~~~~~~~~SpdG-~~la~~~~~d~~~~~~~i~~~d~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (741)
T 2ecf_A 36 GPTLMKPKVAPDG-SRVTFLRGKDSDRNQLDLWSYDIGSGQT--------RLLVDSKVVLPGTETLSDEEKARRERQRIA 106 (741)
T ss_dssp CCCCEEEEECTTS-SEEEEEECCSSCTTEEEEEEEETTTCCE--------EEEECGGGTC--------------------
T ss_pred CCCCCCceEecCC-CEEEEEeccCCCCcccEEEEEECCCCce--------eEccchhhcccccccccchhhhhhhhhhhc
Confidence 4569999999999 57888877 88 899999987432 22222221
Q ss_pred --CCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEE
Q 015484 167 --KEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWD 244 (406)
Q Consensus 167 --~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d 244 (406)
..+.+++|+|+|+ +|++++. +.|.+||+.++... . ...+..+...+.+++|+| +++.|+.++ ++.|++||
T Consensus 107 ~~~~v~~~~~SpDg~-~l~~~~~-~~i~~~d~~~~~~~-~---~~~l~~~~~~~~~~~~SP-DG~~la~~~-~~~i~~~d 178 (741)
T 2ecf_A 107 AMTGIVDYQWSPDAQ-RLLFPLG-GELYLYDLKQEGKA-A---VRQLTHGEGFATDAKLSP-KGGFVSFIR-GRNLWVID 178 (741)
T ss_dssp CCEESCCCEECTTSS-EEEEEET-TEEEEEESSSCSTT-S---CCBCCCSSSCEEEEEECT-TSSEEEEEE-TTEEEEEE
T ss_pred cccCcceeEECCCCC-EEEEEeC-CcEEEEECCCCCcc-e---EEEcccCCcccccccCCC-CCCEEEEEe-CCcEEEEe
Confidence 2378999999998 8888876 99999999876200 0 122345677899999999 677777766 56899999
Q ss_pred CCCCcccccccccCCC----------------eeEEEecCCCCcEEEEEeCCC---------------------------
Q 015484 245 LRTNQTQQRVKAHEKE----------------VNYLSFNPYNEWVLATASSDT--------------------------- 281 (406)
Q Consensus 245 ~~~~~~~~~~~~~~~~----------------v~~i~~~~~~~~~l~~~~~dg--------------------------- 281 (406)
+.+++.......+... +.+++|+|+|+ .|++++.|+
T Consensus 179 ~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~-~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g 257 (741)
T 2ecf_A 179 LASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDS-AIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAG 257 (741)
T ss_dssp TTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSS-CEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTT
T ss_pred cCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCC-EEEEEEEcCCCCceEecCCCCCCcccceEeecCCCC
Confidence 9987655443333222 47899999999 677766554
Q ss_pred ------cEEEEeCCC-CCCCcEEec--CCCCCeEEEEEcCCCCCEEEEEe----CCCcEEEEeCCCCCcccccccccCCC
Q 015484 282 ------TVALFDMRK-MTVPLHILS--SHTEEVFQVEWDPNHETVLASSA----DDRRLMVWDLNRIGDEQLELDAEDGP 348 (406)
Q Consensus 282 ------~i~vwd~~~-~~~~~~~~~--~h~~~v~~i~~~p~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~ 348 (406)
.|.+||+.+ .+. ..... .|...+..++| |+++.+++++. .+..|.+||+.+..
T Consensus 258 ~~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~------------ 323 (741)
T 2ecf_A 258 DANVQVKLGVISPAEQAQT-QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ------------ 323 (741)
T ss_dssp SCCCEEEEEEECSSTTCCC-EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC------------
T ss_pred CCCCeeEEEEEECCCCCce-EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc------------
Confidence 788999987 553 32222 46778999999 99986443333 35789999998632
Q ss_pred CeeEEEecCCCC----CeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 349 PELLFSHGGHKA----KISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 349 ~~~~~~~~~h~~----~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
.......+.. .+..++|+|+|+ ++++++.||.++||.++
T Consensus 324 --~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 324 --QRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRID 366 (741)
T ss_dssp --EEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEEC
T ss_pred --eEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCCCccEEEEEc
Confidence 1122222222 457899999999 78899999988888765
No 143
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=1.4e-19 Score=163.97 Aligned_cols=239 Identities=14% Similarity=0.128 Sum_probs=173.7
Q ss_pred EEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCC---------CeeEEEecCCC
Q 015484 108 IAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDK---------EGYGLSWSPFK 178 (406)
Q Consensus 108 ~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~---------~v~~l~~~~~~ 178 (406)
....+.....+..++|+|++..++++...++.|.+||..+... ...+..+.. .+.+++|+|++
T Consensus 81 ~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 152 (353)
T 3vgz_A 81 VTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEV--------KGRLVLDDRKRTEEVRPLQPRELVADDAT 152 (353)
T ss_dssp EEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCE--------EEEEESCCCCCCSSCCCCEEEEEEEETTT
T ss_pred EEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCee--------EEEEecCCCccccccCCCCCceEEECCCC
Confidence 3445556667899999999966777777789999999987422 334443322 26889999999
Q ss_pred CCeEEEec--CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccc
Q 015484 179 EGYLVSGS--HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA 256 (406)
Q Consensus 179 ~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 256 (406)
+ ++++++ .++.|.+||+.+++.. ..+..+...+.+++|+| +++.+++++.++.|.+||+.+++....+..
T Consensus 153 ~-~l~~~~~~~~~~i~~~d~~~~~~~------~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~ 224 (353)
T 3vgz_A 153 N-TVYISGIGKESVIWVVDGGNIKLK------TAIQNTGKMSTGLALDS-EGKRLYTTNADGELITIDTADNKILSRKKL 224 (353)
T ss_dssp T-EEEEEEESSSCEEEEEETTTTEEE------EEECCCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred C-EEEEEecCCCceEEEEcCCCCceE------EEecCCCCccceEEECC-CCCEEEEEcCCCeEEEEECCCCeEEEEEEc
Confidence 8 666554 5889999999876432 33333455688899999 567777888899999999999887766643
Q ss_pred ----cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 015484 257 ----HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDL 332 (406)
Q Consensus 257 ----~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~ 332 (406)
+...+..++|+|+++.++++...++.|.+||+.+++. +..+.... ...++|+|+++.++++...++.|.+||.
T Consensus 225 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 301 (353)
T 3vgz_A 225 LDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI-LAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDA 301 (353)
T ss_dssp CCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE-EEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE-EEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEEC
Confidence 4556788999999995555555568999999988654 45554433 2579999999876667768999999999
Q ss_pred CCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeC
Q 015484 333 NRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVAD 380 (406)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~ 380 (406)
.+ .+.+..+.. ...+.+++|+|++++++++...
T Consensus 302 ~~--------------~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 302 KS--------------YKVVKTFDT-PTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp TT--------------TEEEEEEEC-CSEEEEEEECTTSCEEEEEEEC
T ss_pred CC--------------CeEEEEEec-CCCCCeEEEcCCCCEEEEEEcc
Confidence 76 233333333 2368899999999965555543
No 144
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.87 E-value=9e-21 Score=188.81 Aligned_cols=246 Identities=9% Similarity=0.024 Sum_probs=162.0
Q ss_pred ceeEEEEcCCCCcEEEEEeCC---------CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC
Q 015484 117 EVNRARCMPQKPNLVGTKTSS---------CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~d---------g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
.|.+++|+|++ .+||+++.+ +.|++||+.+... ..+....+|...+..++|||+|+ .|+.++.
T Consensus 62 ~v~~~~~SpDg-~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~------~~l~~~~~~~~~~~~~~~SPdG~-~la~~~~ 133 (723)
T 1xfd_A 62 RAIRYEISPDR-EYALFSYNVEPIYQHSYTGYYVLSKIPHGDP------QSLDPPEVSNAKLQYAGWGPKGQ-QLIFIFE 133 (723)
T ss_dssp TCSEEEECTTS-SEEEEEESCCCCSSSCCCSEEEEEESSSCCC------EECCCTTCCSCCCSBCCBCSSTT-CEEEEET
T ss_pred ccceEEECCCC-CEEEEEecCccceeecceeeEEEEECCCCce------EeccCCccccccccccEECCCCC-EEEEEEC
Confidence 49999999999 567777664 7899999987421 11222234555688999999998 8888875
Q ss_pred CCeEEEEeCCCccCCceeeeeeeeeccCc------------------cEEEEEeeCCCCCEEEEEecCC-----------
Q 015484 188 DNKICLWDVSALAQDKVIDAMHVYEAHES------------------VVEDVSWHLKNENLFGSAGDDC----------- 238 (406)
Q Consensus 188 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------------------~i~~i~~~p~~~~~l~~~~~dg----------- 238 (406)
+.|++||+.++.... ....+.. .+.+++|+| +++.|+.++.++
T Consensus 134 -~~i~~~~~~~g~~~~------~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~ 205 (723)
T 1xfd_A 134 -NNIYYCAHVGKQAIR------VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTY 205 (723)
T ss_dssp -TEEEEESSSSSCCEE------EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCC
T ss_pred -CeEEEEECCCCceEE------EecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeecc
Confidence 799999998764321 1112222 237899999 567777766443
Q ss_pred -----------------------cEEEEECCCCccccccccc------CCCeeEEEecCCCCcEEEEEeC----CCcEEE
Q 015484 239 -----------------------QLMIWDLRTNQTQQRVKAH------EKEVNYLSFNPYNEWVLATASS----DTTVAL 285 (406)
Q Consensus 239 -----------------------~i~i~d~~~~~~~~~~~~~------~~~v~~i~~~~~~~~~l~~~~~----dg~i~v 285 (406)
.|++||+.+++....+..+ ...+.+++|+|+|+ ++++... +..|++
T Consensus 206 ~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~i~~ 284 (723)
T 1xfd_A 206 TGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTK-VAVTWLNRAQNVSILTL 284 (723)
T ss_dssp SSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSE-EEEEEEETTSCEEEEEE
T ss_pred CCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCe-EEEEEEcCCCCeEEEEE
Confidence 7999999988764555433 56789999999998 6655543 357999
Q ss_pred EeCCCCCCCcEEec-CCCCCe----EEEEEcCCCCCEEEE-EeCCC------cEEEEeCCCCCcccccccccCCCCeeEE
Q 015484 286 FDMRKMTVPLHILS-SHTEEV----FQVEWDPNHETVLAS-SADDR------RLMVWDLNRIGDEQLELDAEDGPPELLF 353 (406)
Q Consensus 286 wd~~~~~~~~~~~~-~h~~~v----~~i~~~p~~~~~l~s-~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 353 (406)
||+.++.. ...+. .+...+ ..++|+|+|+.+++. +..++ .|.+||+...+.. ....
T Consensus 285 ~d~~~g~~-~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~-----------~~~~ 352 (723)
T 1xfd_A 285 CDATTGVC-TKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN-----------DNIQ 352 (723)
T ss_dssp EETTTCCE-EEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSS-----------CCCC
T ss_pred EeCCCCcc-eEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCc-----------ccee
Confidence 99987653 33332 233443 378999999975554 56777 5666763221110 0001
Q ss_pred EecCCCCCeee-EEeCCCCCcEEEEEeCC--CcEEEEeCCC
Q 015484 354 SHGGHKAKISD-FSWNKNDPWVISSVADD--NTVQVWQMTD 391 (406)
Q Consensus 354 ~~~~h~~~v~~-~~~s~~~~~~l~s~~~d--g~i~iw~~~~ 391 (406)
.+..+...+.. ++|+|+|+++++++..+ +.++||++..
T Consensus 353 ~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 353 SITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp BSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred EeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 11122233444 69999999655555555 7899999864
No 145
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=3.5e-20 Score=166.79 Aligned_cols=248 Identities=11% Similarity=0.055 Sum_probs=172.6
Q ss_pred EEEEeecCC---ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC-C----CCCeeEEEecCCCC
Q 015484 108 IAQKIRVDG---EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG-H----DKEGYGLSWSPFKE 179 (406)
Q Consensus 108 ~~~~~~h~~---~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-h----~~~v~~l~~~~~~~ 179 (406)
....+.+.. .+..++|+|++..+++++..++.|.+||+.+... ...+.. + ...+.+++|+|+++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~--------~~~~~~~~~~~~~~~~~~~~~s~dg~ 94 (337)
T 1pby_B 23 VDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET--------LGRIDLSTPEERVKSLFGAALSPDGK 94 (337)
T ss_dssp EEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE--------EEEEECCBTTEEEECTTCEEECTTSS
T ss_pred EEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe--------EeeEEcCCcccccccccceEECCCCC
Confidence 344455554 6899999999976677777889999999987422 223332 1 22577899999998
Q ss_pred CeEEEec------------CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCC
Q 015484 180 GYLVSGS------------HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT 247 (406)
Q Consensus 180 ~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~ 247 (406)
+|++++ .++.|.+||+.+++.. ..+. ....+.+++|+|+ ++.++++ ++.|.+||+.+
T Consensus 95 -~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~------~~~~-~~~~~~~~~~s~d-g~~l~~~--~~~i~~~d~~~ 163 (337)
T 1pby_B 95 -TLAIYESPVRLELTHFEVQPTRVALYDAETLSRR------KAFE-APRQITMLAWARD-GSKLYGL--GRDLHVMDPEA 163 (337)
T ss_dssp -EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE------EEEE-CCSSCCCEEECTT-SSCEEEE--SSSEEEEETTT
T ss_pred -EEEEEecccccccccccccCceEEEEECCCCcEE------EEEe-CCCCcceeEECCC-CCEEEEe--CCeEEEEECCC
Confidence 777775 5799999999875321 2222 2445788999994 5545455 68899999999
Q ss_pred CcccccccccCCCeeEEEecCCCCcEEEEEeCCC-----------------------cEEEEeCCCCCCCcEEecCCCCC
Q 015484 248 NQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT-----------------------TVALFDMRKMTVPLHILSSHTEE 304 (406)
Q Consensus 248 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg-----------------------~i~vwd~~~~~~~~~~~~~h~~~ 304 (406)
++....+..+.. ...+.|+|++..+++++..++ .|.+||+.+.+.....+..+...
T Consensus 164 ~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 242 (337)
T 1pby_B 164 GTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVF 242 (337)
T ss_dssp TEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred CcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCc
Confidence 887665543321 112378998884444333333 36899998866433344556678
Q ss_pred eEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcE
Q 015484 305 VFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTV 384 (406)
Q Consensus 305 v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i 384 (406)
+.+++|+|+++. ++++ ++.|.+||+.+ .+.+..... ...+.+++|+|++++ |++++.++.|
T Consensus 243 ~~~~~~s~dg~~-l~~~--~~~v~~~d~~~--------------~~~~~~~~~-~~~~~~~~~s~dg~~-l~~~~~~~~i 303 (337)
T 1pby_B 243 YFSTAVNPAKTR-AFGA--YNVLESFDLEK--------------NASIKRVPL-PHSYYSVNVSTDGST-VWLGGALGDL 303 (337)
T ss_dssp EEEEEECTTSSE-EEEE--ESEEEEEETTT--------------TEEEEEEEC-SSCCCEEEECTTSCE-EEEESBSSEE
T ss_pred eeeEEECCCCCE-EEEe--CCeEEEEECCC--------------CcCcceecC-CCceeeEEECCCCCE-EEEEcCCCcE
Confidence 899999999985 5555 79999999976 233333332 245789999999994 6666889999
Q ss_pred EEEeCCCccc
Q 015484 385 QVWQMTDSIY 394 (406)
Q Consensus 385 ~iw~~~~~~~ 394 (406)
++||+.++..
T Consensus 304 ~v~d~~~~~~ 313 (337)
T 1pby_B 304 AAYDAETLEK 313 (337)
T ss_dssp EEEETTTCCE
T ss_pred EEEECcCCcE
Confidence 9999988753
No 146
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=3.1e-20 Score=184.50 Aligned_cols=252 Identities=14% Similarity=0.158 Sum_probs=176.4
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCC-----ccccccCCCCCceeeeCCCC--------------Ce
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAK-----QAEKQQDDCDPDLRLKGHDK--------------EG 169 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~~~~~~~~~h~~--------------~v 169 (406)
.....+.+.+.+++|+|++ ..||++ .++.|++|++.+ .... .....+.. .+
T Consensus 114 ~~l~~~~~~~~~~~~SpdG-~~la~~-~~~~i~v~~~~~~~~~~g~~~--------~~~~~~~~~~~~g~~~~~ee~~~~ 183 (706)
T 2z3z_A 114 TYLFDTNEETASLDFSPVG-DRVAYV-RNHNLYIARGGKLGEGMSRAI--------AVTIDGTETLVYGQAVHQREFGIE 183 (706)
T ss_dssp EEEECCTTCCTTCEECTTS-SEEEEE-ETTEEEEEECBCTTSCCCCCE--------ESCSCCBTTEEESSCCGGGCTTCC
T ss_pred EEccCCcccccCCcCCCCC-CEEEEE-ECCeEEEEecCcccccCCCcE--------EeccCCCCCeEcccchhhhhcCCC
Confidence 4455677889999999999 467764 679999999986 3221 11112222 25
Q ss_pred eEEEecCCCCCeEEEec---------------------------------CCCeEEEEeCCCccCCceeeeeeeeeccCc
Q 015484 170 YGLSWSPFKEGYLVSGS---------------------------------HDNKICLWDVSALAQDKVIDAMHVYEAHES 216 (406)
Q Consensus 170 ~~l~~~~~~~~~l~s~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 216 (406)
.+++|+|+|+ +|++++ .+..|.+||+.++... .+.....+..
T Consensus 184 ~~~~~SpDg~-~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~----~~~~~~~~~~ 258 (706)
T 2z3z_A 184 KGTFWSPKGS-CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV----YLQTGEPKEK 258 (706)
T ss_dssp CSEEECTTSS-EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE----ECCCCSCTTC
T ss_pred ceEEECCCCC-EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE----eeccCCCCce
Confidence 8999999999 888887 4468999999875421 1111124667
Q ss_pred cEEEEEeeCCCCCEEEEEecCC-----cEEEEECCCCccccccc--ccCC---CeeEEEecC--CCCcEEEEEeCCCcEE
Q 015484 217 VVEDVSWHLKNENLFGSAGDDC-----QLMIWDLRTNQTQQRVK--AHEK---EVNYLSFNP--YNEWVLATASSDTTVA 284 (406)
Q Consensus 217 ~i~~i~~~p~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~--~~~~---~v~~i~~~~--~~~~~l~~~~~dg~i~ 284 (406)
.+.+++|+| +++.+++++.++ .|++||+.+++....+. .+.. .+.+++|+| +++ ++++++.++.++
T Consensus 259 ~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~-~l~~~~~~g~~~ 336 (706)
T 2z3z_A 259 FLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ-FIWQSRRDGWNH 336 (706)
T ss_dssp EEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE-EEEEECTTSSCE
T ss_pred eEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE-EEEEEccCCccE
Confidence 899999999 677777776665 89999999884333331 1222 246789999 998 888999999999
Q ss_pred EEeCCCCCCCcEEecCCCCCeEE-EEEcCCCCCEEEEEeCCC----cEEEEeCCCCCcccccccccCCCCeeEEEecCCC
Q 015484 285 LFDMRKMTVPLHILSSHTEEVFQ-VEWDPNHETVLASSADDR----RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHK 359 (406)
Q Consensus 285 vwd~~~~~~~~~~~~~h~~~v~~-i~~~p~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 359 (406)
+|++......+..+..|...+.. ++|+|+++.++++++.++ .|..||+.... ...+ .|.
T Consensus 337 l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~---------------~~~l-~~~ 400 (706)
T 2z3z_A 337 LYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK---------------TKDL-TPE 400 (706)
T ss_dssp EEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC---------------CEES-CCS
T ss_pred EEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC---------------ceec-cCC
Confidence 99876333346777778888887 799999987666666665 56666665411 1111 245
Q ss_pred CCeeeEEeCCCCCcEEEEEeCC---CcEEEEeCCCcc
Q 015484 360 AKISDFSWNKNDPWVISSVADD---NTVQVWQMTDSI 393 (406)
Q Consensus 360 ~~v~~~~~s~~~~~~l~s~~~d---g~i~iw~~~~~~ 393 (406)
..+.+++|+|+|++++++++.+ +.|++|++.++.
T Consensus 401 ~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 401 SGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp SSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 6689999999999655554544 569999998764
No 147
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.87 E-value=4.1e-20 Score=184.57 Aligned_cols=241 Identities=9% Similarity=0.056 Sum_probs=172.5
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
..|.+++|+|++ ..|++++. +.|++||+..... .....+..|...+.+++|+|+|+ +|+.++ ++.|.+||
T Consensus 109 ~~v~~~~~SpDg-~~l~~~~~-~~i~~~d~~~~~~------~~~~~l~~~~~~~~~~~~SPDG~-~la~~~-~~~i~~~d 178 (741)
T 2ecf_A 109 TGIVDYQWSPDA-QRLLFPLG-GELYLYDLKQEGK------AAVRQLTHGEGFATDAKLSPKGG-FVSFIR-GRNLWVID 178 (741)
T ss_dssp EESCCCEECTTS-SEEEEEET-TEEEEEESSSCST------TSCCBCCCSSSCEEEEEECTTSS-EEEEEE-TTEEEEEE
T ss_pred cCcceeEECCCC-CEEEEEeC-CcEEEEECCCCCc------ceEEEcccCCcccccccCCCCCC-EEEEEe-CCcEEEEe
Confidence 458999999999 56777665 8999999987310 01344667778899999999998 888886 56999999
Q ss_pred CCCccCCceeeeeeeeeccCc----------------cEEEEEeeCCCCCEEEEEecCC---------------------
Q 015484 196 VSALAQDKVIDAMHVYEAHES----------------VVEDVSWHLKNENLFGSAGDDC--------------------- 238 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~----------------~i~~i~~~p~~~~~l~~~~~dg--------------------- 238 (406)
+.++... .....+.. .+..++|+| +++.|++++.|+
T Consensus 179 ~~~g~~~------~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~ 251 (741)
T 2ecf_A 179 LASGRQM------QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQ 251 (741)
T ss_dssp TTTTEEE------ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEE
T ss_pred cCCCCEE------EeccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEe
Confidence 9875321 11111121 147899999 566666666554
Q ss_pred ------------cEEEEECCC-Cccccccc--ccCCCeeEEEecCCCCcEEEEEeC-----CCcEEEEeCCCCCCCcEEe
Q 015484 239 ------------QLMIWDLRT-NQTQQRVK--AHEKEVNYLSFNPYNEWVLATASS-----DTTVALFDMRKMTVPLHIL 298 (406)
Q Consensus 239 ------------~i~i~d~~~-~~~~~~~~--~~~~~v~~i~~~~~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~ 298 (406)
.|.+||+.+ ++...... .+...+.+++| |+|+ .|++++. +..|++||+.++.. ...+
T Consensus 252 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~-~l~~~~~~~~~~~~~i~~~d~~~g~~-~~~~ 328 (741)
T 2ecf_A 252 RYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQ-HLSFQRQSRDQKKLDLVEVTLASNQQ-RVLA 328 (741)
T ss_dssp ECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETT-EEEEEEEETTSSEEEEEEEETTTCCE-EEEE
T ss_pred ecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCC-EEEEEEecccCCeEEEEEEECCCCce-EEEE
Confidence 789999988 76543332 36778999999 9999 5655443 46899999988654 3344
Q ss_pred cCCCC----CeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeE-EeCCCCCc
Q 015484 299 SSHTE----EVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDF-SWNKNDPW 373 (406)
Q Consensus 299 ~~h~~----~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~-~~s~~~~~ 373 (406)
..+.. .+..++|+|+++ ++++++.||.+.||.+...+ . ...+..|...|..+ .|+|+++.
T Consensus 329 ~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~~-------------~-~~~l~~~~~~v~~~~~~s~dg~~ 393 (741)
T 2ecf_A 329 HETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSKG-------------K-AAALTHGNWSVDELLAVDEKAGL 393 (741)
T ss_dssp EEECSSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEECSSS-------------C-EEESCCSSSCEEEEEEEETTTTE
T ss_pred EcCCCCcCCcCCceEECCCCe-EEEEecCCCccEEEEEcCCC-------------C-eeeeeecceEEEeEeEEeCCCCE
Confidence 33332 456889999998 78999999988888775311 2 34455667778887 59999996
Q ss_pred EEEEEeCCC--cEEEEeCCC
Q 015484 374 VISSVADDN--TVQVWQMTD 391 (406)
Q Consensus 374 ~l~s~~~dg--~i~iw~~~~ 391 (406)
++++++.++ .++||++..
T Consensus 394 l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 394 AYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp EEEEECSSCTTCBEEEEEET
T ss_pred EEEEEeCCCCceEEEEEEEc
Confidence 666777666 899999853
No 148
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.86 E-value=1.2e-20 Score=183.10 Aligned_cols=233 Identities=9% Similarity=0.038 Sum_probs=169.9
Q ss_pred CCceeEEEEcCCCCcEEEEEeC-CCeEEEEeCCCccccccCCCCCceeeeCCC-CCeeEEEecCCCCCeEEEecC---CC
Q 015484 115 DGEVNRARCMPQKPNLVGTKTS-SCEVYVFDCAKQAEKQQDDCDPDLRLKGHD-KEGYGLSWSPFKEGYLVSGSH---DN 189 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~---dg 189 (406)
..+|++++|+|+|. .||+++. +|++.||++.... ...+..|. ..+.+++|+|+ + ++++++. +.
T Consensus 21 ~~~~~~~~~~~DG~-~la~~s~~~g~~~lw~~~~g~---------~~~lt~~~~~~~~~~~~spd-~-~l~~~~~~~g~~ 88 (582)
T 3o4h_A 21 AVEKYSLQGVVDGD-KLLVVGFSEGSVNAYLYDGGE---------TVKLNREPINSVLDPHYGVG-R-VILVRDVSKGAE 88 (582)
T ss_dssp HSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTE---------EEECCSSCCSEECEECTTCS-E-EEEEEECSTTSC
T ss_pred ccchheeecCCCCC-eEEEEEccCCceeEEEEcCCC---------cEeeecccccccccccCCCC-e-EEEEeccCCCCc
Confidence 46799999999994 6777666 9999999975421 23444555 68999999998 5 8887765 45
Q ss_pred eEEEEeCCC--ccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEec
Q 015484 190 KICLWDVSA--LAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFN 267 (406)
Q Consensus 190 ~i~iwd~~~--~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~ 267 (406)
...+|.+.. ...... +.. ...+...+|+|++..++++.+.++.+.+||+.+++...... +.. .+++|+
T Consensus 89 ~~~l~~~~~~~~g~~~~------l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-~~~--~~~~~s 158 (582)
T 3o4h_A 89 QHALFKVNTSRPGEEQR------LEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-LPG--FGFVSD 158 (582)
T ss_dssp CEEEEEEETTSTTCCEE------CTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-ESS--CEEEEE
T ss_pred ceEEEEEeccCCCcccc------ccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-CCC--ceEEEC
Confidence 566766544 222111 111 12234567888666655555555666799998886544333 222 789999
Q ss_pred CCCCcEEEEEeCC----CcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC--cEEEEeCCCCCccccc
Q 015484 268 PYNEWVLATASSD----TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDR--RLMVWDLNRIGDEQLE 341 (406)
Q Consensus 268 ~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~ 341 (406)
|+|+ .|++++.+ +.|++||+.++. ...+..|...+..++|+|+|+ .|+++..++ .|++||+...
T Consensus 159 pDG~-~la~~~~~~~~~~~i~~~d~~~g~--~~~l~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~i~~~d~~~~------ 228 (582)
T 3o4h_A 159 IRGD-LIAGLGFFGGGRVSLFTSNLSSGG--LRVFDSGEGSFSSASISPGMK-VTAGLETAREARLVTVDPRDG------ 228 (582)
T ss_dssp EETT-EEEEEEEEETTEEEEEEEETTTCC--CEEECCSSCEEEEEEECTTSC-EEEEEECSSCEEEEEECTTTC------
T ss_pred CCCC-EEEEEEEcCCCCeEEEEEcCCCCC--ceEeecCCCccccceECCCCC-EEEEccCCCeeEEEEEcCCCC------
Confidence 9999 78877766 689999998755 457788888999999999998 477888888 8999999762
Q ss_pred ccccCCCCeeEEEecCCCCCeeeEE--------eCCCCCcEEEEEeCCCcEEEEeC
Q 015484 342 LDAEDGPPELLFSHGGHKAKISDFS--------WNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 342 ~~~~~~~~~~~~~~~~h~~~v~~~~--------~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
... ...+|...+..++ |+|+|. ++++++.|+.+++|++
T Consensus 229 --------~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 229 --------SVE-DLELPSKDFSSYRPTAITWLGYLPDGR-LAVVARREGRSAVFID 274 (582)
T ss_dssp --------CEE-ECCCSCSHHHHHCCSEEEEEEECTTSC-EEEEEEETTEEEEEET
T ss_pred --------cEE-EccCCCcChhhhhhccccceeEcCCCc-EEEEEEcCCcEEEEEE
Confidence 222 4456777777778 999995 8999999999999999
No 149
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.86 E-value=1.9e-20 Score=186.52 Aligned_cols=244 Identities=11% Similarity=0.075 Sum_probs=169.4
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCC---CeeEEEecCCCCCeEEEecCC----
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDK---EGYGLSWSPFKEGYLVSGSHD---- 188 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~~~~l~s~~~d---- 188 (406)
..+.+++|+|++. ++++ +.||+|++||..+. .....+.+|.. .|.+++|||+|+ +|++++.+
T Consensus 17 ~~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g--------~~~~~~~~~~~~~~~v~~~~~SpDg~-~l~~~~~~~~~~ 85 (723)
T 1xfd_A 17 IHDPEAKWISDTE-FIYR-EQKGTVRLWNVETN--------TSTVLIEGKKIESLRAIRYEISPDRE-YALFSYNVEPIY 85 (723)
T ss_dssp CCCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGC--------CCEEEECTTTTTTTTCSEEEECTTSS-EEEEEESCCCCS
T ss_pred ccccccEEcCCCc-EEEE-eCCCCEEEEECCCC--------cEEEEeccccccccccceEEECCCCC-EEEEEecCccce
Confidence 3577899999995 5665 78999999999874 22445555554 499999999998 88888764
Q ss_pred -----CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCC---
Q 015484 189 -----NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKE--- 260 (406)
Q Consensus 189 -----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--- 260 (406)
+.|.+||+.++.. . .+.....+...+..++|+| +++.|+.++. +.|++||+.+++.......+...
T Consensus 86 ~~~~~~~i~~~d~~~~~~-~---~l~~~~~~~~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~ 159 (723)
T 1xfd_A 86 QHSYTGYYVLSKIPHGDP-Q---SLDPPEVSNAKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIY 159 (723)
T ss_dssp SSCCCSEEEEEESSSCCC-E---ECCCTTCCSCCCSBCCBCS-STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEE
T ss_pred eecceeeEEEEECCCCce-E---eccCCccccccccccEECC-CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceE
Confidence 7888999988653 1 1222233445588999999 5667767665 79999999988765544333332
Q ss_pred ---------------eeEEEecCCCCcEEEEEeCCC----------------------------------cEEEEeCCCC
Q 015484 261 ---------------VNYLSFNPYNEWVLATASSDT----------------------------------TVALFDMRKM 291 (406)
Q Consensus 261 ---------------v~~i~~~~~~~~~l~~~~~dg----------------------------------~i~vwd~~~~ 291 (406)
+.+++|+|+|+ .|++++.++ .|++||+.+.
T Consensus 160 ~g~~~~v~~ee~~~~~~~~~~SpDg~-~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~ 238 (723)
T 1xfd_A 160 NGLSDWLYEEEILKTHIAHWWSPDGT-RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP 238 (723)
T ss_dssp EEECCHHHHHTTSSSSEEEEECTTSS-EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS
T ss_pred CcccceeEEEEeccCcceEEECCCCC-EEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC
Confidence 37899999999 777766442 7999999876
Q ss_pred CCCcEEecCC------CCCeEEEEEcCCCCCEEEEEeC----CCcEEEEeCCCCCcccccccccCCCCeeEEEe-cCCCC
Q 015484 292 TVPLHILSSH------TEEVFQVEWDPNHETVLASSAD----DRRLMVWDLNRIGDEQLELDAEDGPPELLFSH-GGHKA 360 (406)
Q Consensus 292 ~~~~~~~~~h------~~~v~~i~~~p~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~ 360 (406)
.. ...+..+ ...+..++|+|+++ +|++.+. +..|.+||+.+.. ..... ..+..
T Consensus 239 ~~-~~~l~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~i~~~d~~~g~--------------~~~~~~~~~~~ 302 (723)
T 1xfd_A 239 TH-DLEMMPPDDPRMREYYITMVKWATSTK-VAVTWLNRAQNVSILTLCDATTGV--------------CTKKHEDESEA 302 (723)
T ss_dssp CC-CEECCCCCCGGGSSEEEEEEEESSSSE-EEEEEEETTSCEEEEEEEETTTCC--------------EEEEEEEECSS
T ss_pred ce-eEEeeCCccCCCccceeEEEEEeCCCe-EEEEEEcCCCCeEEEEEEeCCCCc--------------ceEEEEeccCC
Confidence 53 3445543 56789999999997 4655532 3579999987622 11111 12233
Q ss_pred Ce----eeEEeCCCCCcEEEE-EeCCC------cEEEEe-CCCcc
Q 015484 361 KI----SDFSWNKNDPWVISS-VADDN------TVQVWQ-MTDSI 393 (406)
Q Consensus 361 ~v----~~~~~s~~~~~~l~s-~~~dg------~i~iw~-~~~~~ 393 (406)
.+ ..++|+|+|+++++. +..++ .|.+|+ ..++.
T Consensus 303 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~ 347 (723)
T 1xfd_A 303 WLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS 347 (723)
T ss_dssp CCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSS
T ss_pred EEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCC
Confidence 33 378999999976554 55677 567777 34443
No 150
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.84 E-value=1.2e-19 Score=180.23 Aligned_cols=242 Identities=12% Similarity=0.111 Sum_probs=172.3
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
..|.+++|+|+ ..++++ .++.|++||+.+.. ...+..+...+.+++|+|+|+ .|+++ .++.|.+|+
T Consensus 82 ~~v~~~~~spd-~~~~~~--~~~~i~~~d~~~~~---------~~~l~~~~~~~~~~~~SpdG~-~la~~-~~~~i~v~~ 147 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF--TQGGLVGFDMLARK---------VTYLFDTNEETASLDFSPVGD-RVAYV-RNHNLYIAR 147 (706)
T ss_dssp CCCEEEEETTT-TEEEEE--ETTEEEEEETTTTE---------EEEEECCTTCCTTCEECTTSS-EEEEE-ETTEEEEEE
T ss_pred cCceeEEECCC-CeEEEE--ECCEEEEEECCCCc---------eEEccCCcccccCCcCCCCCC-EEEEE-ECCeEEEEe
Confidence 67999999999 455554 35999999998732 234556777889999999998 88875 689999999
Q ss_pred CCC-----ccCCceeeeeeeeeccCc--------------cEEEEEeeCCCCCEEEEEe---------------------
Q 015484 196 VSA-----LAQDKVIDAMHVYEAHES--------------VVEDVSWHLKNENLFGSAG--------------------- 235 (406)
Q Consensus 196 ~~~-----~~~~~~~~~~~~~~~~~~--------------~i~~i~~~p~~~~~l~~~~--------------------- 235 (406)
+.+ ++... ....+.. .+.++.|+| +++.|++++
T Consensus 148 ~~~~~~~~g~~~~------~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~ 220 (706)
T 2z3z_A 148 GGKLGEGMSRAIA------VTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAES 220 (706)
T ss_dssp CBCTTSCCCCCEE------SCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEE
T ss_pred cCcccccCCCcEE------eccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCce
Confidence 987 54311 1111122 258899999 677777776
Q ss_pred ------------cCCcEEEEECCCCcccccc--cccCCCeeEEEecCCCCcEEEEEeCCC-----cEEEEeCCCCCCCcE
Q 015484 236 ------------DDCQLMIWDLRTNQTQQRV--KAHEKEVNYLSFNPYNEWVLATASSDT-----TVALFDMRKMTVPLH 296 (406)
Q Consensus 236 ------------~dg~i~i~d~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~ 296 (406)
.+..|++||+.+++..... ..+...+.+++|+|+++ .|++++.++ .|.+||+.++.....
T Consensus 221 ~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~v~~~d~~~g~~~~~ 299 (706)
T 2z3z_A 221 KPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDEN-ILYVAEVNRAQNECKVNAYDAETGRFVRT 299 (706)
T ss_dssp EEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSS-EEEEEEECTTSCEEEEEEEETTTCCEEEE
T ss_pred EEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCC-EEEEEEeCCCCCeeEEEEEECCCCceeeE
Confidence 4467999999988754333 24567799999999999 777766665 899999988633122
Q ss_pred Eec-CCCC---CeEEEEEcC--CCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeee-EEeCC
Q 015484 297 ILS-SHTE---EVFQVEWDP--NHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISD-FSWNK 369 (406)
Q Consensus 297 ~~~-~h~~---~v~~i~~~p--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~s~ 369 (406)
... .+.. .+..++|+| +++ ++++++.||.++||++... ...+..+..|...+.. ++|+|
T Consensus 300 ~~~~~~~~~~~~~~~~~~sp~~dg~-~l~~~~~~g~~~l~~~~~~-------------~~~~~~l~~~~~~v~~~~~~sp 365 (706)
T 2z3z_A 300 LFVETDKHYVEPLHPLTFLPGSNNQ-FIWQSRRDGWNHLYLYDTT-------------GRLIRQVTKGEWEVTNFAGFDP 365 (706)
T ss_dssp EEEEECSSCCCCCSCCEECTTCSSE-EEEEECTTSSCEEEEEETT-------------SCEEEECCCSSSCEEEEEEECT
T ss_pred EEEccCCCeECccCCceeecCCCCE-EEEEEccCCccEEEEEECC-------------CCEEEecCCCCeEEEeeeEEcC
Confidence 221 2222 346789999 997 7889999999999987631 1333445566667877 79999
Q ss_pred CCCcEEEEEeCCC----cEEEEeCCCcc
Q 015484 370 NDPWVISSVADDN----TVQVWQMTDSI 393 (406)
Q Consensus 370 ~~~~~l~s~~~dg----~i~iw~~~~~~ 393 (406)
+++.++++++.++ .|..|++.++.
T Consensus 366 dg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 366 KGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp TSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred CCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 9997666666665 67777776654
No 151
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.84 E-value=2.5e-18 Score=156.86 Aligned_cols=288 Identities=10% Similarity=0.113 Sum_probs=178.4
Q ss_pred EEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEe--ecCCceeEEEEcCCCCcEEEEEeCCCe
Q 015484 62 HKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKI--RVDGEVNRARCMPQKPNLVGTKTSSCE 139 (406)
Q Consensus 62 ~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~i~~~p~~~~~l~~~~~dg~ 139 (406)
+++++|+++.. ..|++..+... ++.+...... .....+..++|+|++ .+|++++.+ .
T Consensus 3 ~~~~vg~~~~~---~~i~~~~~d~~----------------~g~l~~~~~~~~~~~~~~~~~a~spdg-~~l~~~~~~-~ 61 (365)
T 1jof_A 3 HHLMIGTWTPP---GAIFTVQFDDE----------------KLTCKLIKRTEIPQDEPISWMTFDHER-KNIYGAAMK-K 61 (365)
T ss_dssp EEEEEEESSSS---CEEEEEEEETT----------------TTEEEEEEEEECCTTCCCSEEEECTTS-SEEEEEEBT-E
T ss_pred EEEEEEEccCC---CcEEEEEEECC----------------CCCEEEeeEEccCCCCCCcEEEECCCC-CEEEEEccc-e
Confidence 57889998643 35666555411 1334444333 344578999999999 567777777 8
Q ss_pred EEEEeCC-CccccccCCCCCceeeeCCCCCeeEEEecCCCCC-eEEEec-------------CCCeEEEEeCCC-ccCCc
Q 015484 140 VYVFDCA-KQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEG-YLVSGS-------------HDNKICLWDVSA-LAQDK 203 (406)
Q Consensus 140 i~iw~~~-~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~-------------~dg~i~iwd~~~-~~~~~ 203 (406)
|.+|++. +... ........+ +...+++|+|+++. ++++++ .+|.+.+|++.. +...
T Consensus 62 v~~~~~~~~g~~------~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~- 133 (365)
T 1jof_A 62 WSSFAVKSPTEI------VHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLE- 133 (365)
T ss_dssp EEEEEEEETTEE------EEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEE-
T ss_pred EEEEEECCCCCE------EEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCc-
Confidence 9999986 4211 111111112 23567899999873 244553 689999999974 3221
Q ss_pred eeeeeeeee-ccCccEEEEEeeCCCCCEEEEEe-cCCcEEEEECC-CCccc--cccc--ccCCCeeEEEecCCCCcEEEE
Q 015484 204 VIDAMHVYE-AHESVVEDVSWHLKNENLFGSAG-DDCQLMIWDLR-TNQTQ--QRVK--AHEKEVNYLSFNPYNEWVLAT 276 (406)
Q Consensus 204 ~~~~~~~~~-~~~~~i~~i~~~p~~~~~l~~~~-~dg~i~i~d~~-~~~~~--~~~~--~~~~~v~~i~~~~~~~~~l~~ 276 (406)
..+..+. .+...+.+++|+| ++++++++. .++.|++||+. +++.. ..+. .+...+..++|+|+|+ ++++
T Consensus 134 --~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~-~l~v 209 (365)
T 1jof_A 134 --KNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGN-YLYA 209 (365)
T ss_dssp --EEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSS-EEEE
T ss_pred --ceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCC-EEEE
Confidence 1112111 2456789999999 456555554 46899999998 66542 2222 2356689999999999 5555
Q ss_pred Ee-CCCcEEEEeCCC--CCCC-----cEEec----CCCC------CeEEEE-EcCCCCCEEEEEeCCC-----cEEEEeC
Q 015484 277 AS-SDTTVALFDMRK--MTVP-----LHILS----SHTE------EVFQVE-WDPNHETVLASSADDR-----RLMVWDL 332 (406)
Q Consensus 277 ~~-~dg~i~vwd~~~--~~~~-----~~~~~----~h~~------~v~~i~-~~p~~~~~l~s~~~dg-----~i~iwd~ 332 (406)
++ .++.|.+|++.. +... +..+. +|.. .+..++ |+|+++.++++...++ .|.+|++
T Consensus 210 ~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~ 289 (365)
T 1jof_A 210 LMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKL 289 (365)
T ss_dssp EETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred EECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEE
Confidence 55 478999998753 2211 11111 1122 488999 9999985444333333 8999998
Q ss_pred CCCCcccccccccCCCCeeEE-EecCCCCCeeeEEeCC---CCCcEEEEEeC-CCcEEEEeCCCccc
Q 015484 333 NRIGDEQLELDAEDGPPELLF-SHGGHKAKISDFSWNK---NDPWVISSVAD-DNTVQVWQMTDSIY 394 (406)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~s~---~~~~~l~s~~~-dg~i~iw~~~~~~~ 394 (406)
...+. ...+. ....+...+..++|+| +|++ |++++. ++.|++|++..+.+
T Consensus 290 ~~~g~-----------~~~~~~~~~~~~~~~~~~a~sp~~~dg~~-l~v~~~~~~~v~v~~~~~~~l 344 (365)
T 1jof_A 290 RDCGS-----------IEKQLFLSPTPTSGGHSNAVSPCPWSDEW-MAITDDQEGWLEIYRWKDEFL 344 (365)
T ss_dssp CTTSC-----------EEEEEEEEECSSCCTTCCCEEECTTCTTE-EEEECSSSCEEEEEEEETTEE
T ss_pred CCCCC-----------EEEeeeeeecCCCCcccceecCCCcCCCE-EEEEEcCCCeEEEEEEchhhC
Confidence 63111 11111 1233445577899999 7985 556554 58999999977643
No 152
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.83 E-value=6.6e-19 Score=159.26 Aligned_cols=235 Identities=11% Similarity=0.022 Sum_probs=160.9
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCC-CCeeEEEecCCCCCeEEEecCCCeEEEEeCCC
Q 015484 120 RARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHD-KEGYGLSWSPFKEGYLVSGSHDNKICLWDVSA 198 (406)
Q Consensus 120 ~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~ 198 (406)
.+++++++ .++++++.++.|++||..+... ...+..+. ..+..++|+|+++..++++..++.|.+||+.+
T Consensus 4 g~~~~~~~-~~~v~~~~~~~v~~~d~~~~~~--------~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t 74 (349)
T 1jmx_B 4 GPALKAGH-EYMIVTNYPNNLHVVDVASDTV--------YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT 74 (349)
T ss_dssp CCCCCTTC-EEEEEEETTTEEEEEETTTTEE--------EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred cccccCCC-EEEEEeCCCCeEEEEECCCCcE--------EEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCC
Confidence 34566666 7899999999999999987422 33444332 25779999999873455666789999999987
Q ss_pred ccCCceeeeeeeeec-c-----CccEEEEEeeCCCCCEEEEEecC------------CcEEEEECCCCcccccc--cccC
Q 015484 199 LAQDKVIDAMHVYEA-H-----ESVVEDVSWHLKNENLFGSAGDD------------CQLMIWDLRTNQTQQRV--KAHE 258 (406)
Q Consensus 199 ~~~~~~~~~~~~~~~-~-----~~~i~~i~~~p~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~--~~~~ 258 (406)
++... .+.. + ...+..++|+| +++.+++++.+ +.|.+||+.+++....+ ..+.
T Consensus 75 ~~~~~------~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 147 (349)
T 1jmx_B 75 CKNTF------HANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP 147 (349)
T ss_dssp TEEEE------EEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC
T ss_pred CcEEE------EEEcccccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC
Confidence 64321 1211 1 23378899999 56677677654 89999999885543322 1233
Q ss_pred CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCC-------------------------------------
Q 015484 259 KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSH------------------------------------- 301 (406)
Q Consensus 259 ~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h------------------------------------- 301 (406)
..+.+++|+|++. +++ ++ +.|.+||+.+++. +..+..+
T Consensus 148 ~~~~~~~~s~dg~-l~~-~~--~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 222 (349)
T 1jmx_B 148 RQVYLMRAADDGS-LYV-AG--PDIYKMDVKTGKY-TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD 222 (349)
T ss_dssp SSCCCEEECTTSC-EEE-ES--SSEEEECTTTCCE-EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---
T ss_pred CcccceeECCCCc-EEE-cc--CcEEEEeCCCCce-eccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCC
Confidence 4688999999998 555 33 3499999987553 3333221
Q ss_pred -------------------------------CCCeEEEEEcC-CCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCC
Q 015484 302 -------------------------------TEEVFQVEWDP-NHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349 (406)
Q Consensus 302 -------------------------------~~~v~~i~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (406)
...+..++|+| +++. ++++ ++.|.+||+.+ .
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~-l~~~--~~~v~~~d~~~--------------~ 285 (349)
T 1jmx_B 223 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ-IYGV--LNRLAKYDLKQ--------------R 285 (349)
T ss_dssp ----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTE-EEEE--ESEEEEEETTT--------------T
T ss_pred cCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCE-EEEE--cCeEEEEECcc--------------C
Confidence 11456778889 8874 6555 88999999976 2
Q ss_pred eeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 350 ELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 350 ~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
+.+..... ...+.+++|+|+++++ ++++.++.|++||+.++..
T Consensus 286 ~~~~~~~~-~~~~~~~~~s~dg~~l-~~~~~~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 286 KLIKAANL-DHTYYCVAFDKKGDKL-YLGGTFNDLAVFNPDTLEK 328 (349)
T ss_dssp EEEEEEEC-SSCCCEEEECSSSSCE-EEESBSSEEEEEETTTTEE
T ss_pred eEEEEEcC-CCCccceEECCCCCEE-EEecCCCeEEEEeccccce
Confidence 33333332 2357899999999864 4567889999999987643
No 153
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.83 E-value=1.6e-18 Score=179.26 Aligned_cols=248 Identities=11% Similarity=0.092 Sum_probs=182.1
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
...+|.+.+.++.|+++ .++++++.+|.+.||.+... ......+..|. .+..++|+|+|. .|+.+ .++
T Consensus 198 ~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~-------g~~~~~l~~~~-~~~~~~~SpDG~-~la~~-~~~ 265 (1045)
T 1k32_A 198 KIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLD-------GKDLRKHTSFT-DYYPRHLNTDGR-RILFS-KGG 265 (1045)
T ss_dssp EEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETT-------SCSCEECCCCC-SSCEEEEEESSS-CEEEE-ETT
T ss_pred ECcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCC-------CCcceEecCCC-CcceeeEcCCCC-EEEEE-eCC
Confidence 34679999999999987 46778888899999987642 11234454554 467789999998 78877 589
Q ss_pred eEEEEeCCCccCCceeee-----eeeeeccCccEEEEEee-CCCCCEEEEEecCCcEEEEECCCCcccccccccCC-Cee
Q 015484 190 KICLWDVSALAQDKVIDA-----MHVYEAHESVVEDVSWH-LKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEK-EVN 262 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~i~~i~~~-p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~v~ 262 (406)
.|.+|++..... ..+.. ......|...+.+++|+ | +++.+++++ ++.|.+|++..++... +..+.. .+.
T Consensus 266 ~i~~~d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~ 341 (1045)
T 1k32_A 266 SIYIFNPDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYV 341 (1045)
T ss_dssp EEEEECTTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEE
T ss_pred EEEEecCCceEe-eeeccCcccccccccccccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEE
Confidence 999999843211 01000 00011244578999999 9 566666666 7899999998776433 445666 899
Q ss_pred EEEecCCCCcEEEEEeCCCcEE-EEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccc
Q 015484 263 YLSFNPYNEWVLATASSDTTVA-LFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE 341 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~dg~i~-vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 341 (406)
.++|+ +++ .|+.++.++.+. +||+.... ...+..|...+..++|+|+++ .|++++.++.|++||+.+
T Consensus 342 ~~~~s-dg~-~l~~~s~~~~l~~~~d~~~~~--~~~l~~~~~~~~~~~~SpDG~-~la~~~~~~~v~~~d~~t------- 409 (1045)
T 1k32_A 342 RRGGD-TKV-AFIHGTREGDFLGIYDYRTGK--AEKFEENLGNVFAMGVDRNGK-FAVVANDRFEIMTVDLET------- 409 (1045)
T ss_dssp EECSS-SEE-EEEEEETTEEEEEEEETTTCC--EEECCCCCCSEEEEEECTTSS-EEEEEETTSEEEEEETTT-------
T ss_pred eeeEc-CCC-eEEEEECCCceEEEEECCCCC--ceEecCCccceeeeEECCCCC-EEEEECCCCeEEEEECCC-------
Confidence 99999 888 777777788888 89987643 345557888999999999997 588999999999999976
Q ss_pred ccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCC----------CcEEEEeCCCcc
Q 015484 342 LDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADD----------NTVQVWQMTDSI 393 (406)
Q Consensus 342 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~d----------g~i~iw~~~~~~ 393 (406)
........+|...+.+++|+|+|++ |++++.+ +.|++||+.++.
T Consensus 410 -------g~~~~~~~~~~~~v~~~~~SpDG~~-la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 410 -------GKPTVIERSREAMITDFTISDNSRF-IAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp -------CCEEEEEECSSSCCCCEEECTTSCE-EEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred -------CceEEeccCCCCCccceEECCCCCe-EEEEecCccccccCCCCCeEEEEECCCCc
Confidence 2333444578888999999999995 5555544 489999998764
No 154
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.82 E-value=9.7e-19 Score=180.86 Aligned_cols=234 Identities=9% Similarity=0.049 Sum_probs=178.7
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC-----------CCCCeeEEEec-CCCCCeEE
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG-----------HDKEGYGLSWS-PFKEGYLV 183 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-----------h~~~v~~l~~~-~~~~~~l~ 183 (406)
..+...+|+|++. .|+.+ .++.|++|++.... +..+.+ |...+.+++|+ |+|. .|+
T Consensus 245 ~~~~~~~~SpDG~-~la~~-~~~~i~~~d~~~~~---------l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~-~la 312 (1045)
T 1k32_A 245 TDYYPRHLNTDGR-RILFS-KGGSIYIFNPDTEK---------IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGD-LIA 312 (1045)
T ss_dssp CSSCEEEEEESSS-CEEEE-ETTEEEEECTTTCC---------EEECCCCCCCBCCSEEEECGGGGEEEEEECGGG-CEE
T ss_pred CCcceeeEcCCCC-EEEEE-eCCEEEEecCCceE---------eeeeccCcccccccccccccccceeeecCCCCC-EEE
Confidence 3577889999995 56665 48999999984321 122222 44578999999 9998 788
Q ss_pred EecCCCeEEEEeCCCccCCceeeeeeeeeccCc-cEEEEEeeCCCCCEEEEEecCCcEE-EEECCCCcccccccccCCCe
Q 015484 184 SGSHDNKICLWDVSALAQDKVIDAMHVYEAHES-VVEDVSWHLKNENLFGSAGDDCQLM-IWDLRTNQTQQRVKAHEKEV 261 (406)
Q Consensus 184 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~i~~i~~~p~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~v 261 (406)
+++ ++.|.+|++..+.. ..+..|.. .+..++|+ ++..++.++.++.+. +||+.+++... +..+...+
T Consensus 313 ~~~-~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~ 381 (1045)
T 1k32_A 313 FVS-RGQAFIQDVSGTYV-------LKVPEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNV 381 (1045)
T ss_dssp EEE-TTEEEEECTTSSBE-------EECSCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSE
T ss_pred EEE-cCEEEEEcCCCCce-------EEccCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCCCceE-ecCCccce
Confidence 877 78999999876532 22345666 89999999 566777777788888 99998766433 33677889
Q ss_pred eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCC----------CcEEEEe
Q 015484 262 NYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADD----------RRLMVWD 331 (406)
Q Consensus 262 ~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d----------g~i~iwd 331 (406)
..++|+|+|+ .|++++.++.|++||+.++.. ......|...+.+++|+|++++ |++++.+ +.|++||
T Consensus 382 ~~~~~SpDG~-~la~~~~~~~v~~~d~~tg~~-~~~~~~~~~~v~~~~~SpDG~~-la~~~~~~~~~~~~~~~~~i~l~d 458 (1045)
T 1k32_A 382 FAMGVDRNGK-FAVVANDRFEIMTVDLETGKP-TVIERSREAMITDFTISDNSRF-IAYGFPLKHGETDGYVMQAIHVYD 458 (1045)
T ss_dssp EEEEECTTSS-EEEEEETTSEEEEEETTTCCE-EEEEECSSSCCCCEEECTTSCE-EEEEEEECSSTTCSCCEEEEEEEE
T ss_pred eeeEECCCCC-EEEEECCCCeEEEEECCCCce-EEeccCCCCCccceEECCCCCe-EEEEecCccccccCCCCCeEEEEE
Confidence 9999999999 899999999999999987653 4555588899999999999985 6666544 4899999
Q ss_pred CCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 332 LNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
+.. .. ...+..|...+..++|+|+|+ .|+.++.++...+|+...
T Consensus 459 ~~~--------------g~-~~~l~~~~~~~~~~~~spdG~-~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 459 MEG--------------RK-IFAATTENSHDYAPAFDADSK-NLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp TTT--------------TE-EEECSCSSSBEEEEEECTTSC-EEEEEESCCCCCEECSSS
T ss_pred CCC--------------Cc-EEEeeCCCcccCCceEcCCCC-EEEEEecccCCcCcchhc
Confidence 976 12 445566777889999999999 577778888888887643
No 155
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.81 E-value=9.2e-18 Score=151.94 Aligned_cols=232 Identities=11% Similarity=0.102 Sum_probs=154.1
Q ss_pred CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC--CCeEEEEeCCCccCCceeeeeeeeecc
Q 015484 137 SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH--DNKICLWDVSALAQDKVIDAMHVYEAH 214 (406)
Q Consensus 137 dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~ 214 (406)
++.|.+|.+...... .. ......+......++|+|+++ +++++.. ++.|.+|++..+. ...+..+..+
T Consensus 15 ~~~i~v~~~d~~tg~----~~-~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~----~~~~~~~~~~ 84 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKT----LT-NDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQT----AHKLNTVVAP 84 (347)
T ss_dssp CCEEEEEEEETTTTE----EE-EEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTE----EEEEEEEEEE
T ss_pred CCCEEEEEEcCCCCe----EE-EeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCc----EEEeeeeecC
Confidence 556888877652111 11 112334556678899999887 5555532 6899999996543 2233444456
Q ss_pred CccEEEEEeeCCCCCEEEEEe-cCCcEEEEECCCC-cc--cccccc---------cCCCeeEEEecCCCCcEEEEEeCCC
Q 015484 215 ESVVEDVSWHLKNENLFGSAG-DDCQLMIWDLRTN-QT--QQRVKA---------HEKEVNYLSFNPYNEWVLATASSDT 281 (406)
Q Consensus 215 ~~~i~~i~~~p~~~~~l~~~~-~dg~i~i~d~~~~-~~--~~~~~~---------~~~~v~~i~~~~~~~~~l~~~~~dg 281 (406)
...+..++|+| +++++++++ .++.|.+|++... .. +..+.. ....+.+++|+|+++ ++++...++
T Consensus 85 ~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~ 162 (347)
T 3hfq_A 85 GTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSD 162 (347)
T ss_dssp SCCCSEEEEET-TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTT
T ss_pred CCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCC
Confidence 67788999999 566555555 7899999999632 21 222211 123478899999999 888888888
Q ss_pred cEEEEeCCCCCCC--cEEecC-CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCC
Q 015484 282 TVALFDMRKMTVP--LHILSS-HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH 358 (406)
Q Consensus 282 ~i~vwd~~~~~~~--~~~~~~-h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h 358 (406)
.|.+||+...... +..+.. ....+..++|+|+++.+++++..++.|.+|++...... ...+......
T Consensus 163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~----------~~~~~~~~~~ 232 (347)
T 3hfq_A 163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGA----------FTQLGIVKTI 232 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE----------EEEEEEEESS
T ss_pred EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc----------eEEeeeeeec
Confidence 9999999832221 112222 23468899999999866666778999999998742111 1112222211
Q ss_pred C------CCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 359 K------AKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 359 ~------~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
. ..+..++|+|+|++++++...++.|.+|++.
T Consensus 233 ~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 233 PADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp CTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred CCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 1 3488899999999766777789999999987
No 156
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.79 E-value=1.9e-17 Score=160.64 Aligned_cols=272 Identities=13% Similarity=0.075 Sum_probs=183.9
Q ss_pred CCCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecC-
Q 015484 37 EWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVD- 115 (406)
Q Consensus 37 ~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~- 115 (406)
..|+.++.+.||.. +++++... .+.+.|+.+. .. +..+...|.
T Consensus 21 ~~~~~~~~~~~DG~------------~la~~s~~----~g~~~lw~~~-----------~g---------~~~~lt~~~~ 64 (582)
T 3o4h_A 21 AVEKYSLQGVVDGD------------KLLVVGFS----EGSVNAYLYD-----------GG---------ETVKLNREPI 64 (582)
T ss_dssp HSCEEEEEEEETTT------------EEEEEEEE----TTEEEEEEEE-----------TT---------EEEECCSSCC
T ss_pred ccchheeecCCCCC------------eEEEEEcc----CCceeEEEEc-----------CC---------CcEeeecccc
Confidence 34899999999632 45554432 2456666653 10 123334555
Q ss_pred CceeEEEEcCCCCcEEEEEeC---CCeEEEEeCCC--ccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 116 GEVNRARCMPQKPNLVGTKTS---SCEVYVFDCAK--QAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~---dg~i~iw~~~~--~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
..+..++|+|+ .+++++.. +....||.+.. ... ...+..+ ..+...+|+|+++..+++.+.++.
T Consensus 65 ~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~~~~g~--------~~~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~ 133 (582)
T 3o4h_A 65 NSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNTSRPGE--------EQRLEAV-KPMRILSGVDTGEAVVFTGATEDR 133 (582)
T ss_dssp SEECEECTTCS--EEEEEEECSTTSCCEEEEEEETTSTTC--------CEECTTS-CSBEEEEEEECSSCEEEEEECSSC
T ss_pred cccccccCCCC--eEEEEeccCCCCcceEEEEEeccCCCc--------cccccCC-CCceeeeeCCCCCeEEEEecCCCC
Confidence 68999999998 46776664 44456655443 211 1122222 234467888888755555555555
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC----CcEEEEECCCCcccccccccCCCeeEEEe
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD----CQLMIWDLRTNQTQQRVKAHEKEVNYLSF 266 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~v~~i~~ 266 (406)
+.+||+.+++.. .+..+.. .+++|+| +++.+++++.+ +.|++||+.+++.. .+..+...+..++|
T Consensus 134 ~~l~d~~~g~~~-------~l~~~~~--~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~ 202 (582)
T 3o4h_A 134 VALYALDGGGLR-------ELARLPG--FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASI 202 (582)
T ss_dssp EEEEEEETTEEE-------EEEEESS--CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEE
T ss_pred ceEEEccCCcEE-------EeecCCC--ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceE
Confidence 669999876321 1122222 7899999 67888877766 78999999887754 56667888999999
Q ss_pred cCCCCcEEEEEeCCC--cEEEEeCCCCCCCcEEecCCCCCeEEEE--------EcCCCCCEEEEEeCCCcEEEEeCCCCC
Q 015484 267 NPYNEWVLATASSDT--TVALFDMRKMTVPLHILSSHTEEVFQVE--------WDPNHETVLASSADDRRLMVWDLNRIG 336 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~i~--------~~p~~~~~l~s~~~dg~i~iwd~~~~~ 336 (406)
+|+|+ .|+++..++ .|++||+.++.. . .+..|...+..+. |+|+| .++++++.||.+++|++ .
T Consensus 203 SpDG~-~l~~~~~~~~~~i~~~d~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~-g-- 275 (582)
T 3o4h_A 203 SPGMK-VTAGLETAREARLVTVDPRDGSV-E-DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID-G-- 275 (582)
T ss_dssp CTTSC-EEEEEECSSCEEEEEECTTTCCE-E-ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET-T--
T ss_pred CCCCC-EEEEccCCCeeEEEEEcCCCCcE-E-EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE-C--
Confidence 99999 777888888 899999987654 3 6677777777777 99999 68999999999999999 2
Q ss_pred cccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCc---EEEEeCCC
Q 015484 337 DEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNT---VQVWQMTD 391 (406)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~---i~iw~~~~ 391 (406)
+ ... .+...|.+++|+ +++ ++++++.+.. +.+|+..+
T Consensus 276 ~-------------~~~---~~~~~v~~~~~s-dg~-~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 276 E-------------RVE---APQGNHGRVVLW-RGK-LVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp E-------------EEC---CCSSEEEEEEEE-TTE-EEEEEEETTEEEEEEEETTCC
T ss_pred C-------------eec---cCCCceEEEEec-CCE-EEEEEcCCCCCCeEEEEcCCC
Confidence 1 111 123568899999 888 5677776643 66676654
No 157
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.79 E-value=6.2e-18 Score=152.01 Aligned_cols=234 Identities=11% Similarity=0.027 Sum_probs=158.0
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCC-C-CeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceee
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHD-K-EGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVID 206 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~-~-~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 206 (406)
.++++++.++.|.+||..+... ...+.... . .+.+++|+|+++.++++++.++.|.+||+.+++....+.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~--------~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~ 73 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAV--------DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRID 73 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE--------EEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcE--------EEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEE
Confidence 4789999999999999987322 33343222 1 478999999997455677778999999998764322111
Q ss_pred eeeeeeccCccEEEEEeeCCCCCEEEEEe------------cCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEE
Q 015484 207 AMHVYEAHESVVEDVSWHLKNENLFGSAG------------DDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVL 274 (406)
Q Consensus 207 ~~~~~~~~~~~i~~i~~~p~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 274 (406)
... ...+...+.+++|+| +++.++++. .++.|.+||+.+++.+..+.. ...+.+++|+|+++ .|
T Consensus 74 ~~~-~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~-~l 149 (337)
T 1pby_B 74 LST-PEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGS-KL 149 (337)
T ss_dssp CCB-TTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSS-CE
T ss_pred cCC-cccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCC-EE
Confidence 000 000122567899999 566666664 579999999998877666653 45678899999998 55
Q ss_pred EEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC-----------------------cEEEEe
Q 015484 275 ATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDR-----------------------RLMVWD 331 (406)
Q Consensus 275 ~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg-----------------------~i~iwd 331 (406)
+++ ++.|.+||+.+++. +..+..+.. ...+.|+|++..+++++..++ .|.+||
T Consensus 150 ~~~--~~~i~~~d~~~~~~-~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 225 (337)
T 1pby_B 150 YGL--GRDLHVMDPEAGTL-VEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD 225 (337)
T ss_dssp EEE--SSSEEEEETTTTEE-EEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE
T ss_pred EEe--CCeEEEEECCCCcE-eeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEe
Confidence 555 68899999987653 444443331 112378999986544444443 367888
Q ss_pred CCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 332 LNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
+..... . ......+...+.+++|+|++++ ++++ ++.|.+||+.++..
T Consensus 226 ~~~~~~------------~-~~~~~~~~~~~~~~~~s~dg~~-l~~~--~~~v~~~d~~~~~~ 272 (337)
T 1pby_B 226 LETGEM------------A-MREVRIMDVFYFSTAVNPAKTR-AFGA--YNVLESFDLEKNAS 272 (337)
T ss_dssp TTTCCE------------E-EEEEEECSSCEEEEEECTTSSE-EEEE--ESEEEEEETTTTEE
T ss_pred CCCCCc------------e-EeecCCCCCceeeEEECCCCCE-EEEe--CCeEEEEECCCCcC
Confidence 876221 1 2233445667889999999995 5555 68999999987643
No 158
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.78 E-value=8.8e-19 Score=174.38 Aligned_cols=242 Identities=9% Similarity=0.075 Sum_probs=159.8
Q ss_pred eEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCC---CeeEEEecCCCCCeEEEecC--------
Q 015484 119 NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDK---EGYGLSWSPFKEGYLVSGSH-------- 187 (406)
Q Consensus 119 ~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~~~~l~s~~~-------- 187 (406)
..++|+|++ .++++ +.|++|++||+.+... ...+.+|.. .+.+++|||+|+ +|++++.
T Consensus 19 ~~~~~s~dg-~~~~~-~~d~~i~~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~SpDg~-~la~~~~~~~~~~~s 87 (719)
T 1z68_A 19 FFPNWISGQ-EYLHQ-SADNNIVLYNIETGQS--------YTILSNRTMKSVNASNYGLSPDRQ-FVYLESDYSKLWRYS 87 (719)
T ss_dssp CCCEESSSS-EEEEE-CTTSCEEEEESSSCCE--------EEEECHHHHHTTTCSEEEECTTSS-EEEEEEEEEECSSSC
T ss_pred CccEECCCC-eEEEE-cCCCCEEEEEcCCCcE--------EEEEccccccccceeeEEECCCCC-eEEEEecCceeEEee
Confidence 367999999 55555 4699999999987422 333333332 488999999999 8888876
Q ss_pred -CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-cccCCCe----
Q 015484 188 -DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKEV---- 261 (406)
Q Consensus 188 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v---- 261 (406)
++.|++||+.+++.... ..+ ...+..++|+| +++.|+.+. ++.|++||+.+++..... .++...+
T Consensus 88 ~~~~i~~~d~~~g~~~~~----~~l---~~~~~~~~~SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~ 158 (719)
T 1z68_A 88 YTATYYIYDLSNGEFVRG----NEL---PRPIQYLCWSP-VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGI 158 (719)
T ss_dssp EEEEEEEEETTTTEECCS----SCC---CSSBCCEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESS
T ss_pred cceEEEEEECCCCccccc----eec---CcccccceECC-CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccc
Confidence 78999999988643100 011 24588899999 566666664 789999999887764322 2222222
Q ss_pred -------------eEEEecCCCCcEEEEEeCCC----------------------------------cEEEEeCCCCCCC
Q 015484 262 -------------NYLSFNPYNEWVLATASSDT----------------------------------TVALFDMRKMTVP 294 (406)
Q Consensus 262 -------------~~i~~~~~~~~~l~~~~~dg----------------------------------~i~vwd~~~~~~~ 294 (406)
.+++|+|+|+ .|++++.|. .|++||+.+....
T Consensus 159 ~~~v~~ee~~~~~~~~~wSPDG~-~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~ 237 (719)
T 1z68_A 159 PDWVYEEEMLATKYALWWSPNGK-FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYV 237 (719)
T ss_dssp CCHHHHHHTTCSSCCEEECTTSS-EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHH
T ss_pred ccceeeeecccCcccEEECCCCC-EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcc
Confidence 4899999999 777776542 7889999875420
Q ss_pred ----c---EEecCCCCCeEEEEEcCCCCCEEEEEeCC----CcEEEEe----CCCCCcccccccccCCCCeeE-EEecCC
Q 015484 295 ----L---HILSSHTEEVFQVEWDPNHETVLASSADD----RRLMVWD----LNRIGDEQLELDAEDGPPELL-FSHGGH 358 (406)
Q Consensus 295 ----~---~~~~~h~~~v~~i~~~p~~~~~l~s~~~d----g~i~iwd----~~~~~~~~~~~~~~~~~~~~~-~~~~~h 358 (406)
+ ..+..|...+..++|+|+++ ++++.... ..|.+|| +.+.... .+. ....+|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~-----------~~~~~~~~~~ 305 (719)
T 1z68_A 238 GPQEVPVPAMIASSDYYFSWLTWVTDER-VCLQWLKRVQNVSVLSICDFREDWQTWDCP-----------KTQEHIEESR 305 (719)
T ss_dssp CCEECCCCHHHHTSCEEEEEEEESSSSE-EEEEEEESSTTEEEEEEEEECSSSSSEECC-----------GGGEEEEECS
T ss_pred ceeEccCCccCCCCcceEEEeEEeCCCe-EEEEEeccccCeEEEEEEcccCCCCCCceE-----------EEEecccccC
Confidence 1 12345778899999999975 56664422 2488888 5542111 111 011345
Q ss_pred CCCee-----eEEeCCCCCcEEE-EEeCCC--cEEEEeCCCcc
Q 015484 359 KAKIS-----DFSWNKNDPWVIS-SVADDN--TVQVWQMTDSI 393 (406)
Q Consensus 359 ~~~v~-----~~~~s~~~~~~l~-s~~~dg--~i~iw~~~~~~ 393 (406)
...+. .+.|+|+|+.+++ +...+| .|.+|++.++.
T Consensus 306 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 306 TGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN 348 (719)
T ss_dssp SSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred CceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence 56666 8899999996544 344555 46666776654
No 159
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.78 E-value=1.2e-17 Score=166.13 Aligned_cols=244 Identities=11% Similarity=0.075 Sum_probs=159.2
Q ss_pred ceeEEEEcCCCCcEEEEEeC---------CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC
Q 015484 117 EVNRARCMPQKPNLVGTKTS---------SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
.+.+++|+|+| ..||+++. ++.|++||+.+..... ...+ ...+..++|||+|+ .|+.+.
T Consensus 61 ~~~~~~~SpDg-~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~------~~~l---~~~~~~~~~SPDG~-~la~~~- 128 (719)
T 1z68_A 61 NASNYGLSPDR-QFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR------GNEL---PRPIQYLCWSPVGS-KLAYVY- 128 (719)
T ss_dssp TCSEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTTEECC------SSCC---CSSBCCEEECSSTT-CEEEEE-
T ss_pred ceeeEEECCCC-CeEEEEecCceeEEeecceEEEEEECCCCcccc------ceec---CcccccceECCCCC-EEEEEE-
Confidence 49999999999 56777665 6899999998743200 0111 24688999999999 888875
Q ss_pred CCeEEEEeCCCccCCceeee---eeeeeccCcc---------EEEEEeeCCCCCEEEEEecCC-----------------
Q 015484 188 DNKICLWDVSALAQDKVIDA---MHVYEAHESV---------VEDVSWHLKNENLFGSAGDDC----------------- 238 (406)
Q Consensus 188 dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~---------i~~i~~~p~~~~~l~~~~~dg----------------- 238 (406)
++.|++|++.++........ ...+.++... ..+++|+| +++.|+.++.|.
T Consensus 129 ~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~ 207 (719)
T 1z68_A 129 QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYP 207 (719)
T ss_dssp TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSC
T ss_pred CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCc
Confidence 78999999987643211000 0011122111 24899999 677777776542
Q ss_pred -----------------cEEEEECCCCccc--------ccccccCCCeeEEEecCCCCcEEEEEeCCC----cEEEEe--
Q 015484 239 -----------------QLMIWDLRTNQTQ--------QRVKAHEKEVNYLSFNPYNEWVLATASSDT----TVALFD-- 287 (406)
Q Consensus 239 -----------------~i~i~d~~~~~~~--------~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg----~i~vwd-- 287 (406)
.|++||+.+++.. ..+..+...+.+++|+|++. ++++....+ .|.+||
T Consensus 208 ~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~~~~~~~~l~~~d~~ 286 (719)
T 1z68_A 208 RTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER-VCLQWLKRVQNVSVLSICDFR 286 (719)
T ss_dssp EEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSE-EEEEEEESSTTEEEEEEEEEC
T ss_pred cceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCe-EEEEEeccccCeEEEEEEccc
Confidence 7889999887643 22345777899999999976 666644322 488899
Q ss_pred --CCCCCCCcEEe----cCCCCCeE-----EEEEcCCCCCEEE-EEeCCCc--EEEEeCCCCCcccccccccCCCCeeEE
Q 015484 288 --MRKMTVPLHIL----SSHTEEVF-----QVEWDPNHETVLA-SSADDRR--LMVWDLNRIGDEQLELDAEDGPPELLF 353 (406)
Q Consensus 288 --~~~~~~~~~~~----~~h~~~v~-----~i~~~p~~~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~ 353 (406)
+.++.. ...+ ..|...+. .+.|+|+|+.+++ ++..+|. |.+||+.... ..
T Consensus 287 ~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~---------------~~ 350 (719)
T 1z68_A 287 EDWQTWDC-PKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN---------------AI 350 (719)
T ss_dssp SSSSSEEC-CGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT---------------CE
T ss_pred CCCCCCce-EEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc---------------eE
Confidence 766543 2233 35666666 8899999986544 3445664 5566654411 12
Q ss_pred EecCCCCCeeeEEeCCCCCcEEEEEeC----CCcEEEEeCCC
Q 015484 354 SHGGHKAKISDFSWNKNDPWVISSVAD----DNTVQVWQMTD 391 (406)
Q Consensus 354 ~~~~h~~~v~~~~~s~~~~~~l~s~~~----dg~i~iw~~~~ 391 (406)
.+..+...+..+.++ +++.+++++.. ++..++|.+..
T Consensus 351 ~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 351 QITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp ECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred ecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 233345557777777 77766666654 48899998753
No 160
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.78 E-value=2.1e-16 Score=143.87 Aligned_cols=239 Identities=7% Similarity=0.057 Sum_probs=153.9
Q ss_pred cEEEEEe----CCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC----CeEEEEeCCCcc
Q 015484 129 NLVGTKT----SSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD----NKICLWDVSALA 200 (406)
Q Consensus 129 ~~l~~~~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d----g~i~iwd~~~~~ 200 (406)
.++.+|+ .++.|++|.+..... ........ +......++|+|+++ +|++++.+ +.|.+|++....
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g----~~~~~~~~--~~~~p~~l~~spdg~-~l~~~~~~~~~~~~v~~~~~~~~~ 86 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETG----ESLPLSDA--EVANPSYLIPSADGK-FVYSVNEFSKDQAAVSAFAFDKEK 86 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTC----CEEEEEEE--ECSCCCSEEECTTSS-EEEEEECCSSTTCEEEEEEEETTT
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCC----CEEEeecc--cCCCCceEEECCCCC-EEEEEEccCCCCCcEEEEEEeCCC
Confidence 3455554 356899998764211 11112222 667778899999998 88888875 899999987631
Q ss_pred CCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccc--------------ccCCCeeEEEe
Q 015484 201 QDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK--------------AHEKEVNYLSF 266 (406)
Q Consensus 201 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------------~~~~~v~~i~~ 266 (406)
..+..+.....+......+++ ++..++++...++.|.+|++.....+..+. .+...+.+++|
T Consensus 87 --g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 162 (361)
T 3scy_A 87 --GTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRI 162 (361)
T ss_dssp --TEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEE
T ss_pred --CcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEE
Confidence 112233333444556677777 244455555578999999997544332221 11234578999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCC----C-c-------EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 267 NPYNEWVLATASSDTTVALFDMRKMTV----P-L-------HILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~----~-~-------~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
+|+++.+++++..++.|.+|++..... . + .....+...+..++|+|+++.++++...++.|.+|++..
T Consensus 163 spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~ 242 (361)
T 3scy_A 163 TPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD 242 (361)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET
T ss_pred CCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC
Confidence 999995555555688999999875442 1 1 122334567889999999985444554799999999874
Q ss_pred CCcccccccccCCCCeeEEE---ecCCCCCeeeEEeCCCCCcEEEEEeC-CCcEEEEeCC
Q 015484 335 IGDEQLELDAEDGPPELLFS---HGGHKAKISDFSWNKNDPWVISSVAD-DNTVQVWQMT 390 (406)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~~~~s~~~~~~l~s~~~-dg~i~iw~~~ 390 (406)
.. ...+.. ...+...+..++|+|+|++++++... ++.|.+|++.
T Consensus 243 g~------------~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 243 GM------------LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp TE------------EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred Cc------------eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence 21 011111 22333457899999999965555555 6899999996
No 161
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.77 E-value=4.1e-16 Score=140.06 Aligned_cols=248 Identities=15% Similarity=0.124 Sum_probs=175.1
Q ss_pred CceeEEEEcCCCCcEEEEEeCC------------------------CeEEEEeCCCccccccCCCCCceeee-CCCCCee
Q 015484 116 GEVNRARCMPQKPNLVGTKTSS------------------------CEVYVFDCAKQAEKQQDDCDPDLRLK-GHDKEGY 170 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~d------------------------g~i~iw~~~~~~~~~~~~~~~~~~~~-~h~~~v~ 170 (406)
+.+.+++++|++ +++++...+ +.|.+||..+... ...+. ++-....
T Consensus 24 ~~v~~va~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~--------~~~~~~~~~~~p~ 94 (329)
T 3fvz_A 24 GQVSGVALDSKN-NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI--------LQSSGKNLFYLPH 94 (329)
T ss_dssp SCEEEEEECTTC-CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE--------EEEECTTTCSSEE
T ss_pred CCceEEEECCCC-CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE--------EeccCCCccCCce
Confidence 679999999998 677777766 4799999876321 22222 3445788
Q ss_pred EEEecCCCCCeEEEecCCCeEEEEeCCCcc-CCceeeee---eeeeccCccEEEEEeeCCCCCEEEEEe-cCCcEEEEEC
Q 015484 171 GLSWSPFKEGYLVSGSHDNKICLWDVSALA-QDKVIDAM---HVYEAHESVVEDVSWHLKNENLFGSAG-DDCQLMIWDL 245 (406)
Q Consensus 171 ~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~---~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg~i~i~d~ 245 (406)
++++++++. ++++...++.|++|+..... ....+... ..-..+-.....++++|.++.++++.+ .++.|++||
T Consensus 95 gia~d~~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~- 172 (329)
T 3fvz_A 95 GLSIDTDGN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS- 172 (329)
T ss_dssp EEEECTTSC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-
T ss_pred EEEECCCCC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-
Confidence 999999998 88888889999999976431 11111000 000123346889999986788888886 689999999
Q ss_pred CCCcccccccc----------cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEe--cCCCCCeEEEEEcCC
Q 015484 246 RTNQTQQRVKA----------HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHIL--SSHTEEVFQVEWDPN 313 (406)
Q Consensus 246 ~~~~~~~~~~~----------~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~h~~~v~~i~~~p~ 313 (406)
..++.+..+.. +-.....++++|++..++++...++.|++||..+++. +..+ ..+...+..++|+|
T Consensus 173 ~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~-~~~~~~~~~~~~~~~~~~~p- 250 (329)
T 3fvz_A 173 PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF-VREIKHASFGRNVFAISYIP- 250 (329)
T ss_dssp TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECCTTTTTCEEEEEEET-
T ss_pred CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE-EEEEeccccCCCcceeeecC-
Confidence 45665555532 2234789999998444888888889999999986543 4554 34566889999999
Q ss_pred CCCEEEEEe-------CCCcEEEEeCCCCCcccccccccCCCCeeEEEe---cCCCCCeeeEEeCCCCCcEEEEEeCCCc
Q 015484 314 HETVLASSA-------DDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH---GGHKAKISDFSWNKNDPWVISSVADDNT 383 (406)
Q Consensus 314 ~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~s~~~~~~l~s~~~dg~ 383 (406)
+ .++++.+ .+..|++||+... .++..+ .++...+.+++++|+|. ++++...++.
T Consensus 251 g-~~~~~~g~~~v~~~~~~~v~~~~~~~g--------------~~~~~~~~~~~~~~~p~~ia~~~dG~-lyvad~~~~~ 314 (329)
T 3fvz_A 251 G-FLFAVNGKPYFGDQEPVQGFVMNFSSG--------------EIIDVFKPVRKHFDMPHDIVASEDGT-VYIGDAHTNT 314 (329)
T ss_dssp T-EEEEEECCCCTTCSCCCCEEEEETTTC--------------CEEEEECCSSSCCSSEEEEEECTTSE-EEEEESSSCC
T ss_pred C-EEEEeCCCEEeccCCCcEEEEEEcCCC--------------eEEEEEcCCCCccCCeeEEEECCCCC-EEEEECCCCE
Confidence 3 2333332 3458999998762 334443 35667799999999996 8999999999
Q ss_pred EEEEeCCCc
Q 015484 384 VQVWQMTDS 392 (406)
Q Consensus 384 i~iw~~~~~ 392 (406)
|++|++...
T Consensus 315 I~~~~~~~~ 323 (329)
T 3fvz_A 315 VWKFTLTEK 323 (329)
T ss_dssp EEEEEEEEC
T ss_pred EEEEeCCcc
Confidence 999998753
No 162
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.76 E-value=7e-16 Score=135.57 Aligned_cols=237 Identities=12% Similarity=0.162 Sum_probs=165.7
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee------CCCCCeeEEEec-CCCCCeEEEecC
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK------GHDKEGYGLSWS-PFKEGYLVSGSH 187 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~~-~~~~~~l~s~~~ 187 (406)
-..+.++++.|++ .++++...++.|.+|+..... ...+. ++...+.++++. +++. ++++...
T Consensus 29 ~~~p~~v~~~~~g-~l~v~~~~~~~i~~~d~~g~~---------~~~~~~~~~~~~~~~~p~~i~~~~~~g~-l~v~~~~ 97 (286)
T 1q7f_A 29 FTEPSGVAVNAQN-DIIVADTNNHRIQIFDKEGRF---------KFQFGECGKRDSQLLYPNRVAVVRNSGD-IIVTERS 97 (286)
T ss_dssp BSCEEEEEECTTC-CEEEEEGGGTEEEEECTTSCE---------EEEECCBSSSTTCBSSEEEEEEETTTTE-EEEEECG
T ss_pred cCCCceEEECCCC-CEEEEECCCCEEEEECCCCcE---------EEEecccCCCcccccCceEEEEEcCCCe-EEEEcCC
Confidence 3568899999998 578887889999999976421 12221 244568899995 5554 5555533
Q ss_pred -CCeEEEEeCCCccCCceeeeeeeee-ccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccc--ccCCCeeE
Q 015484 188 -DNKICLWDVSALAQDKVIDAMHVYE-AHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK--AHEKEVNY 263 (406)
Q Consensus 188 -dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~ 263 (406)
++.|.+||. ++.. + ..+. .+...+.+++++| +++++++...++.|.+||.. ++.+..+. .+...+..
T Consensus 98 ~~~~i~~~d~-~g~~---~---~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~ 168 (286)
T 1q7f_A 98 PTHQIQIYNQ-YGQF---V---RKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNG 168 (286)
T ss_dssp GGCEEEEECT-TSCE---E---EEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEE
T ss_pred CCCEEEEECC-CCcE---E---EEecCccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEE
Confidence 789999994 3321 1 2221 2335688999998 56788887788999999964 44444442 33456899
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCC--CCCeEEEEEcCCCCCEEEEEeCCC-cEEEEeCCCCCcccc
Q 015484 264 LSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSH--TEEVFQVEWDPNHETVLASSADDR-RLMVWDLNRIGDEQL 340 (406)
Q Consensus 264 i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h--~~~v~~i~~~p~~~~~l~s~~~dg-~i~iwd~~~~~~~~~ 340 (406)
++++|++. ++++...++.|++||... . .+..+..+ ...+..++++|++. ++++...++ .|.+||...
T Consensus 169 i~~~~~g~-l~v~~~~~~~i~~~~~~g-~-~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~~~~g------ 238 (286)
T 1q7f_A 169 VVVNDKQE-IFISDNRAHCVKVFNYEG-Q-YLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDG------ 238 (286)
T ss_dssp EEECSSSE-EEEEEGGGTEEEEEETTC-C-EEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTS------
T ss_pred EEECCCCC-EEEEECCCCEEEEEcCCC-C-EEEEEccCCccCCCcEEEECCCCC-EEEEeCCCCEEEEEECCCC------
Confidence 99999988 777777789999999753 2 24445433 36789999999995 677777775 999999643
Q ss_pred cccccCCCCeeEEEecCC--CCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 341 ELDAEDGPPELLFSHGGH--KAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 341 ~~~~~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
..+..+..+ ...+.+++++|+|. ++++ +.|+.|++|++...
T Consensus 239 ---------~~~~~~~~~~~~~~~~~i~~~~~g~-l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 239 ---------QLISALESKVKHAQCFDVALMDDGS-VVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp ---------CEEEEEEESSCCSCEEEEEEETTTE-EEEE-ETTTEEEEEECSCC
T ss_pred ---------CEEEEEcccCCCCcceeEEECCCCc-EEEE-CCCCeEEEEEcccc
Confidence 222222222 23477999999997 6776 57999999998653
No 163
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.74 E-value=1.6e-16 Score=158.48 Aligned_cols=250 Identities=9% Similarity=0.069 Sum_probs=162.2
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCC-----eeEEEecCCCCCeEEEecCC--
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKE-----GYGLSWSPFKEGYLVSGSHD-- 188 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~l~~~~~~~~~l~s~~~d-- 188 (406)
.....++|+|++ .+++++ ||+|++|++.+... ...+.+|... ...++|||+|+ +|+.++.+
T Consensus 17 ~~~~~~~w~~dg-~~~~~~--~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~Spdg~-~l~~~~~~~~ 84 (740)
T 4a5s_A 17 LKLYSLRWISDH-EYLYKQ--ENNILVFNAEYGNS--------SVFLENSTFDEFGHSINDYSISPDGQ-FILLEYNYVK 84 (740)
T ss_dssp CCCCCEEECSSS-EEEEEE--TTEEEEEETTTCCE--------EEEECTTTTTTCCSCCCEEEECTTSS-EEEEEEEEEE
T ss_pred ccccccEECCCC-cEEEEc--CCcEEEEECCCCce--------EEEEechhhhhhcccccceEECCCCC-EEEEEECCee
Confidence 456789999999 677775 89999999987432 3445555432 24488999998 88888776
Q ss_pred -------CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-cccCCC
Q 015484 189 -------NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKE 260 (406)
Q Consensus 189 -------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~ 260 (406)
+.+.+||+.+++.. .+..+...+...+|+| +++.||.+ .++.|++||+.+++..+.. .++...
T Consensus 85 ~~r~~~~~~~~~~d~~~~~~~-------~l~~~~~~~~~~~~SP-dG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~ 155 (740)
T 4a5s_A 85 QWRHSYTASYDIYDLNKRQLI-------TEERIPNNTQWVTWSP-VGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDI 155 (740)
T ss_dssp CSSSCEEEEEEEEETTTTEEC-------CSSCCCTTEEEEEECS-STTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTT
T ss_pred eEEEccceEEEEEECCCCcEE-------EcccCCCcceeeEECC-CCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccc
Confidence 56779999986432 2344667899999999 56666665 4689999999887653321 222222
Q ss_pred -----------------eeEEEecCCCCcEEEEEeCCC------------------------------------cEEEEe
Q 015484 261 -----------------VNYLSFNPYNEWVLATASSDT------------------------------------TVALFD 287 (406)
Q Consensus 261 -----------------v~~i~~~~~~~~~l~~~~~dg------------------------------------~i~vwd 287 (406)
...+.|+|+|+ .||.++.|. .|++||
T Consensus 156 ~~~g~~~~v~~ee~~~~~~~~~wSpDg~-~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d 234 (740)
T 4a5s_A 156 IYNGITDWVYEEEVFSAYSALWWSPNGT-FLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVN 234 (740)
T ss_dssp EEESBCCHHHHHHTSSSSBCEEECTTSS-EEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEE
T ss_pred eecCcccccccchhcCCCcceEECCCCC-EEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEE
Confidence 23589999999 676654221 478899
Q ss_pred CCC---CCC-CcEEec------CCCCCeEEEEEcCCCCCEEEEEe-C---CCcEEEEeCCCCCcccccccccCCCCeeEE
Q 015484 288 MRK---MTV-PLHILS------SHTEEVFQVEWDPNHETVLASSA-D---DRRLMVWDLNRIGDEQLELDAEDGPPELLF 353 (406)
Q Consensus 288 ~~~---~~~-~~~~~~------~h~~~v~~i~~~p~~~~~l~s~~-~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 353 (406)
+.+ +.. ....+. .|...+..++|+|+++ +++... . +..|.+||+.+........ ....+
T Consensus 235 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~-~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~-----~~~~l- 307 (740)
T 4a5s_A 235 TDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQER-ISLQWLRRIQNYSVMDICDYDESSGRWNCL-----VARQH- 307 (740)
T ss_dssp TTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTE-EEEEEEESSTTEEEEEEEEEETTTTEEEEC-----GGGCE-
T ss_pred CCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCe-EEEEEeCCCCCEEEEEEEECCCCcccccee-----EEEEe-
Confidence 887 531 133333 3777899999999997 444432 2 3479999987643000000 00111
Q ss_pred EecCCCCCee-----eEEeCCCCCcEEEEEe-CCC--cEEEEeCCCccc
Q 015484 354 SHGGHKAKIS-----DFSWNKNDPWVISSVA-DDN--TVQVWQMTDSIY 394 (406)
Q Consensus 354 ~~~~h~~~v~-----~~~~s~~~~~~l~s~~-~dg--~i~iw~~~~~~~ 394 (406)
...+|...|. .++|+|+|+.++...+ .+| .|.+|++.++..
T Consensus 308 ~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~ 356 (740)
T 4a5s_A 308 IEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC 356 (740)
T ss_dssp EEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred eeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce
Confidence 1133444444 7899999996542444 444 477778876644
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.74 E-value=3.6e-16 Score=143.62 Aligned_cols=251 Identities=14% Similarity=0.134 Sum_probs=159.5
Q ss_pred EeecCCceeE-----EEEcCCCCcEEEEEeC-CC--eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeE
Q 015484 111 KIRVDGEVNR-----ARCMPQKPNLVGTKTS-SC--EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYL 182 (406)
Q Consensus 111 ~~~h~~~v~~-----i~~~p~~~~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 182 (406)
...|.+.... .+|+|++. .|+.++. +| .|.+||+..... .....++...+.+++|+|+++ .|
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~g~~~l~~~d~~~g~~--------~~lt~~~~~~~~~~~~spdg~-~l 95 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGS-KLLFGGAFDGPWNYYLLDLNTQVA--------TQLTEGRGDNTFGGFLSPDDD-AL 95 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSC-EEEEEECTTSSCEEEEEETTTCEE--------EECCCSSCBCSSSCEECTTSS-EE
T ss_pred ecCCcccccchhhcCccCCCCCC-EEEEEEcCCCCceEEEEeCCCCce--------EEeeeCCCCCccceEEcCCCC-EE
Confidence 3345555554 78999995 4555555 67 488888876322 223344555555788999998 89
Q ss_pred EEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEE--eeCCCCCEEEEE----------------------ecCC
Q 015484 183 VSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVS--WHLKNENLFGSA----------------------GDDC 238 (406)
Q Consensus 183 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~--~~p~~~~~l~~~----------------------~~dg 238 (406)
+.++.++.|.+||+.+++.. .....+...+.... ++| ++.+++.. ..+.
T Consensus 96 ~~~~~~~~l~~~d~~~g~~~------~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (388)
T 3pe7_A 96 FYVKDGRNLMRVDLATLEEN------VVYQVPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCC 168 (388)
T ss_dssp EEEETTTEEEEEETTTCCEE------EEEECCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCE
T ss_pred EEEeCCCeEEEEECCCCcce------eeeechhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcc
Confidence 99988999999999886432 12223344443333 366 56666532 2346
Q ss_pred cEEEEECCCCcccccccccCCCeeEEEecC-CCCcEEEEEeCC------CcEEEEeCCCCCCCcEEecCCC--CCeEEEE
Q 015484 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNP-YNEWVLATASSD------TTVALFDMRKMTVPLHILSSHT--EEVFQVE 309 (406)
Q Consensus 239 ~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~h~--~~v~~i~ 309 (406)
.|.+||+.+++.. .+..+...+..++|+| ++. .|+....+ ..|.++|..... ...+..+. ..+....
T Consensus 169 ~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~ 244 (388)
T 3pe7_A 169 RLMRVDLKTGEST-VILQENQWLGHPIYRPYDDS-TVAFCHEGPHDLVDARMWLINEDGTN--MRKVKTHAEGESCTHEF 244 (388)
T ss_dssp EEEEEETTTCCEE-EEEEESSCEEEEEEETTEEE-EEEEEECSCTTTSSCSEEEEETTSCC--CEESCCCCTTEEEEEEE
T ss_pred eEEEEECCCCceE-EeecCCccccccEECCCCCC-EEEEEEecCCCCCcceEEEEeCCCCc--eEEeeeCCCCcccccce
Confidence 7999999988643 3444567789999999 888 66655543 378888876533 34454444 2578899
Q ss_pred EcCCCCCEEEEEeCCC----cEEEEeCCCCCcccccccccCCCCeeEEEecCCCC---CeeeEEeCCCCCcEEEEE----
Q 015484 310 WDPNHETVLASSADDR----RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKA---KISDFSWNKNDPWVISSV---- 378 (406)
Q Consensus 310 ~~p~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~s~~~~~~l~s~---- 378 (406)
|+|+|+.++.++..++ .|.+||+..... ..+....++.. ....++|+|+|++++++.
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~------------~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 312 (388)
T 3pe7_A 245 WVPDGSALVYVSYLKGSPDRFIYSADPETLEN------------RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDS 312 (388)
T ss_dssp ECTTSSCEEEEEEETTCCCEEEEEECTTTCCE------------EEEEEECCEEEEEECTTSSEEEEEECCC--------
T ss_pred ECCCCCEEEEEecCCCCCcceEEEEecCCCce------------EEEEcCCCceeeeecCCCCeEccCCCcceeEeeecc
Confidence 9999987545444333 399999986332 22222222110 123347999999655443
Q ss_pred ----eCCCcEEEEeCCCccc
Q 015484 379 ----ADDNTVQVWQMTDSIY 394 (406)
Q Consensus 379 ----~~dg~i~iw~~~~~~~ 394 (406)
..+..|++|++.++..
T Consensus 313 ~~~~~~~~~i~~~d~~~~~~ 332 (388)
T 3pe7_A 313 GYKIENDPFLYVFNMKNGTQ 332 (388)
T ss_dssp ----CCCCEEEEEETTTTEE
T ss_pred ccccCCCCEEEEEeccCCce
Confidence 4567899999988754
No 165
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.73 E-value=8e-16 Score=138.91 Aligned_cols=203 Identities=11% Similarity=0.112 Sum_probs=141.5
Q ss_pred EEEeecCC--ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCC------CCCeeEEEecCCCCC
Q 015484 109 AQKIRVDG--EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGH------DKEGYGLSWSPFKEG 180 (406)
Q Consensus 109 ~~~~~h~~--~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h------~~~v~~l~~~~~~~~ 180 (406)
...+.... .+..++|+|++..+++++..++.|.+||+.+... ...+..+ ...+.+++|+|+++
T Consensus 34 ~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~--------~~~~~~~~~~~~~~~~~~~~~~spdg~- 104 (349)
T 1jmx_B 34 YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN--------TFHANLSSVPGEVGRSMYSFAISPDGK- 104 (349)
T ss_dssp EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE--------EEEEESCCSTTEEEECSSCEEECTTSS-
T ss_pred EEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE--------EEEEEcccccccccccccceEECCCCC-
Confidence 33444444 7889999999965667777889999999987422 2233322 22378999999998
Q ss_pred eEEEecCC------------CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC
Q 015484 181 YLVSGSHD------------NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN 248 (406)
Q Consensus 181 ~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~ 248 (406)
+|++++.+ +.|.+||+.+++....+ ..+. +...+.+++|+|+ ++++ +++ +.|.+||+.++
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---~~~~-~~~~~~~~~~s~d-g~l~-~~~--~~i~~~d~~~~ 176 (349)
T 1jmx_B 105 EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV---RTFP-MPRQVYLMRAADD-GSLY-VAG--PDIYKMDVKTG 176 (349)
T ss_dssp EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS---EEEE-CCSSCCCEEECTT-SCEE-EES--SSEEEECTTTC
T ss_pred EEEEEcccccccccccccCCCeEEEEECCCcccccee---eecc-CCCcccceeECCC-CcEE-Ecc--CcEEEEeCCCC
Confidence 88888765 89999999875432222 2222 3346888999995 4555 443 34999999888
Q ss_pred cccccccccC--------------------------------------------------------------------CC
Q 015484 249 QTQQRVKAHE--------------------------------------------------------------------KE 260 (406)
Q Consensus 249 ~~~~~~~~~~--------------------------------------------------------------------~~ 260 (406)
+....+.... ..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (349)
T 1jmx_B 177 KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTEL 256 (349)
T ss_dssp CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred ceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCc
Confidence 7654442111 13
Q ss_pred eeEEEecC-CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 261 VNYLSFNP-YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 261 v~~i~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
+..++|+| +++ +++++ ++.|.+||+.+.+. +..+.. ...+.+++|+|+++. |++++.++.|.+||+.+
T Consensus 257 ~~~~~~sp~dg~-~l~~~--~~~v~~~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~-l~~~~~~~~v~v~d~~~ 325 (349)
T 1jmx_B 257 YFTGLRSPKDPN-QIYGV--LNRLAKYDLKQRKL-IKAANL-DHTYYCVAFDKKGDK-LYLGGTFNDLAVFNPDT 325 (349)
T ss_dssp EEEEEECSSCTT-EEEEE--ESEEEEEETTTTEE-EEEEEC-SSCCCEEEECSSSSC-EEEESBSSEEEEEETTT
T ss_pred ceeeEecCCCCC-EEEEE--cCeEEEEECccCeE-EEEEcC-CCCccceEECCCCCE-EEEecCCCeEEEEeccc
Confidence 45677889 888 66666 78999999987553 444433 345789999999986 55577889999999976
No 166
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.72 E-value=2e-15 Score=148.77 Aligned_cols=246 Identities=9% Similarity=-0.012 Sum_probs=163.5
Q ss_pred EeecCCceeEEEEcCCCCcEEEEE--eCCCeEEEEeCCCccccccCCCCCceeeeCCCCCee---------EEEec--CC
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTK--TSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGY---------GLSWS--PF 177 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~---------~l~~~--~~ 177 (406)
..+|...+..++|+++. .+++.. +.++...||..... .....+..|...+. ...|+ |+
T Consensus 19 ~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~l~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPD 89 (662)
T 3azo_A 19 VASRSGRPACVGAVGDE-VWWVAPRPAEAGRATLVRRRAD--------GAEESALPAPWNVRNRVFEYSGFPWAGVPRPA 89 (662)
T ss_dssp HHHTCSCCEEEEEETTE-EEEEEEETTTTTEEEEEEECTT--------SCEEESSCTTCCBCCCGGGTCCCCEEEECCSS
T ss_pred HhhcCCccceeEEcCCe-EEEEecCcccCCcEEEEEECCC--------CCcceeCCCCccccccccccCCccceeeeecC
Confidence 34688999999999876 456665 55788999986331 11344555555555 56666 99
Q ss_pred CCCe-EEEec-CCCeEEEEeCC--C-ccCCceeeeeeeeec-----cCccEEEEEeeCCCCCEEEEEecC----------
Q 015484 178 KEGY-LVSGS-HDNKICLWDVS--A-LAQDKVIDAMHVYEA-----HESVVEDVSWHLKNENLFGSAGDD---------- 237 (406)
Q Consensus 178 ~~~~-l~s~~-~dg~i~iwd~~--~-~~~~~~~~~~~~~~~-----~~~~i~~i~~~p~~~~~l~~~~~d---------- 237 (406)
|+ . |+.++ .+..|.++++. . +. . ..+.. |...+.+++|+| +++.|+.++.+
T Consensus 90 g~-~~la~~~~~~~~l~~~~~~~~g~~~-~------~~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~ 160 (662)
T 3azo_A 90 GG-PLLVFTHFGDQRLYAFEPDAPGGAV-P------RPLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVR 160 (662)
T ss_dssp SS-CEEEEEBTTTCCEEEECTTSTTCCC-C------EECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEE
T ss_pred CC-eEEEEEECCCCeEEEEcCCCCCCCC-C------EeccCCccCCCCccccCcEECC-CCCEEEEEEecccCCCCCCce
Confidence 98 5 55444 35677777765 2 22 1 12222 566788999999 56777777766
Q ss_pred CcEEEEECCC------Cccccccc-ccCCCeeEEEecCCCCcEEEEEeCC--------CcEEEEeCC-CCC--CCcEEec
Q 015484 238 CQLMIWDLRT------NQTQQRVK-AHEKEVNYLSFNPYNEWVLATASSD--------TTVALFDMR-KMT--VPLHILS 299 (406)
Q Consensus 238 g~i~i~d~~~------~~~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~d--------g~i~vwd~~-~~~--~~~~~~~ 299 (406)
..|++||+.+ ++. ..+. .+...+..++|+|+|+ .|+.++.+ ..|++||+. ++. .......
T Consensus 161 ~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~-~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~ 238 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGR-QAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG 238 (662)
T ss_dssp EEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSS-EEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE
T ss_pred eEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCC-EEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC
Confidence 5899999987 443 3444 4556788899999999 66666544 379999998 441 3233344
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEeCCC--cEEEEeCCCCCcccccccccCCCCeeEEEecCCCC--------CeeeEEeCC
Q 015484 300 SHTEEVFQVEWDPNHETVLASSADDR--RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKA--------KISDFSWNK 369 (406)
Q Consensus 300 ~h~~~v~~i~~~p~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--------~v~~~~~s~ 369 (406)
.|...+..+.|+|+|+ ++++++.++ .|.+||+..... ......+.. .+..++|+|
T Consensus 239 ~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~--------------~~l~~~~~~~~~p~w~~~~~~~~~~~ 303 (662)
T 3azo_A 239 GPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAA--------------TQLCRREEEFAGPLWTPGMRWFAPLA 303 (662)
T ss_dssp ETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCE--------------EESSCCSSBSSCCCCSTTCCSEEECT
T ss_pred CCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCce--------------eecccccccccCccccccCceEeEeC
Confidence 5578899999999998 788888888 555555533111 111111111 156788999
Q ss_pred CCCcEEEEEeCCCcEEEE--eCCCcc
Q 015484 370 NDPWVISSVADDNTVQVW--QMTDSI 393 (406)
Q Consensus 370 ~~~~~l~s~~~dg~i~iw--~~~~~~ 393 (406)
++. ++++++. +.++|| ++.++.
T Consensus 304 ~~~-~~~~~~~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 304 NGL-IAVVHGK-GAAVLGILDPESGE 327 (662)
T ss_dssp TSC-EEEEEBS-SSCEEEEEETTTTE
T ss_pred CCE-EEEEEEc-CccEEEEEECCCCc
Confidence 988 7888888 999999 555443
No 167
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.71 E-value=9.3e-16 Score=140.81 Aligned_cols=244 Identities=9% Similarity=0.013 Sum_probs=152.3
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEE--ecCCCCCeEEE-------
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLS--WSPFKEGYLVS------- 184 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~~~~~~~~l~s------- 184 (406)
+...+..+.|+|++ ..|+.++.++.|++||+.+... ...+..+...+.... +++++. +++.
T Consensus 79 ~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~g~~--------~~~~~~~~~~~~~~~~~~~~dg~-~l~~~~~~~~~ 148 (388)
T 3pe7_A 79 RGDNTFGGFLSPDD-DALFYVKDGRNLMRVDLATLEE--------NVVYQVPAEWVGYGTWVANSDCT-KLVGIEIRRED 148 (388)
T ss_dssp SCBCSSSCEECTTS-SEEEEEETTTEEEEEETTTCCE--------EEEEECCTTEEEEEEEEECTTSS-EEEEEEEEGGG
T ss_pred CCCCccceEEcCCC-CEEEEEeCCCeEEEEECCCCcc--------eeeeechhhcccccceeECCCCC-eeccccccCcc
Confidence 34445578899999 5688888889999999987422 333444555454444 478777 6653
Q ss_pred ---------------ecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec------CCcEEEE
Q 015484 185 ---------------GSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD------DCQLMIW 243 (406)
Q Consensus 185 ---------------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~------dg~i~i~ 243 (406)
...++.|.+||+.++.. ..+..+...+..++|+|.+++.++.+.. ...|.++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~-------~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~ 221 (388)
T 3pe7_A 149 WVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES-------TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLI 221 (388)
T ss_dssp CCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE-------EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEE
T ss_pred cccccccchhhhhhccCCcceEEEEECCCCce-------EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEE
Confidence 23457899999987642 2233456678999999933455545443 3378888
Q ss_pred ECCCCcccccccccC--CCeeEEEecCCCCcEEEEEeCCC----cEEEEeCCCCCC-CcEEecCCCC---CeEEEEEcCC
Q 015484 244 DLRTNQTQQRVKAHE--KEVNYLSFNPYNEWVLATASSDT----TVALFDMRKMTV-PLHILSSHTE---EVFQVEWDPN 313 (406)
Q Consensus 244 d~~~~~~~~~~~~~~--~~v~~i~~~~~~~~~l~~~~~dg----~i~vwd~~~~~~-~~~~~~~h~~---~v~~i~~~p~ 313 (406)
|+..+.. ..+..+. ..+..++|+|+|+.+++++..++ .|++||+.+++. .+..+..+.. ....+.|+|+
T Consensus 222 d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spd 300 (388)
T 3pe7_A 222 NEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGD 300 (388)
T ss_dssp ETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEE
T ss_pred eCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccC
Confidence 8876543 3332233 35778899999995544444333 399999987653 1222222100 0112379999
Q ss_pred CCCEEEEE--------eCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCC-----------CeeeEEeCCCCCcE
Q 015484 314 HETVLASS--------ADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKA-----------KISDFSWNKNDPWV 374 (406)
Q Consensus 314 ~~~~l~s~--------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----------~v~~~~~s~~~~~~ 374 (406)
|+.++++. ..+..|.+||+.... +..+..+.. .+.+++|+|+|+++
T Consensus 301 g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~---------------~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l 365 (388)
T 3pe7_A 301 GSDAPVDVQDDSGYKIENDPFLYVFNMKNGT---------------QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQI 365 (388)
T ss_dssp ECCC------------CCCCEEEEEETTTTE---------------EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEE
T ss_pred CCcceeEeeeccccccCCCCEEEEEeccCCc---------------eEEeccccCcccccccccccCCCCccCCCCCCEE
Confidence 98755443 456789999997621 112222333 57889999999976
Q ss_pred EEEEeCCCcEEEEeCC
Q 015484 375 ISSVADDNTVQVWQMT 390 (406)
Q Consensus 375 l~s~~~dg~i~iw~~~ 390 (406)
+.++..+|..+||.++
T Consensus 366 ~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 366 LFTSDVHGKPALYLAT 381 (388)
T ss_dssp EEEECTTSSCEEEEEE
T ss_pred EEEecCCCceeEEEEE
Confidence 6676678887777653
No 168
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.70 E-value=2.8e-14 Score=125.95 Aligned_cols=245 Identities=8% Similarity=-0.008 Sum_probs=168.7
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
.+.....+++|+|++..+++++..++.|.+|+.... ...+..+...+.++++++++. ++++...++.|.
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~----------~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~i~ 93 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ----------LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRLE 93 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC----------EEEEESSCSSEEEEEECTTCC-EEEEETTTTEEE
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC----------eEEEECCCCCcceeeECCCCc-EEEEecCCCeEE
Confidence 456678899999999558889999999999998872 344556777899999999888 777777778999
Q ss_pred EEeCCCccCCceeeeeeeeec-cCccEEEEEeeCCCCCEEEEE----e-------------cCCcEEEEECCCCcccccc
Q 015484 193 LWDVSALAQDKVIDAMHVYEA-HESVVEDVSWHLKNENLFGSA----G-------------DDCQLMIWDLRTNQTQQRV 254 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~l~~~----~-------------~dg~i~i~d~~~~~~~~~~ 254 (406)
+||..++...... ..... ....+++++++| +++++++. + ..+.|..++.. ++ ...+
T Consensus 94 ~~d~~~g~~~~~~---~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~ 167 (296)
T 3e5z_A 94 RQREPGGEWESIA---DSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAP 167 (296)
T ss_dssp EECSTTCCEEEEE---CEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEE
T ss_pred EEcCCCCcEEEEe---eccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEe
Confidence 9998765421111 11111 123467899998 67777763 2 13466666655 33 3333
Q ss_pred cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCC---cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 015484 255 KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVP---LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWD 331 (406)
Q Consensus 255 ~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd 331 (406)
..+....+.++|+|+++ .+++.+.++.|.+||+...... ...+..+...+.+++++++|. +.++. ++.|.+||
T Consensus 168 ~~~~~~~~gi~~s~dg~-~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~~~v~~~~ 243 (296)
T 3e5z_A 168 IRDRVKPNGLAFLPSGN-LLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA--GDGVHVLT 243 (296)
T ss_dssp ECCCSSEEEEEECTTSC-EEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE--TTEEEEEC
T ss_pred ecCCCCCccEEECCCCC-EEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc--CCeEEEEC
Confidence 44556678999999999 5577777889999998732221 122233456678899999996 45544 88999999
Q ss_pred CCCCCcccccccccCCCCeeEEEecCCCCCeeeEEe-CCCCCcEEEEEeCCCcEEEEeCCCcccCC
Q 015484 332 LNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSW-NKNDPWVISSVADDNTVQVWQMTDSIYRD 396 (406)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-s~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 396 (406)
... ..+..+..+.. +.+++| .|+++. |..++.+ .+.-+++.++.++.
T Consensus 244 ~~g---------------~~~~~~~~~~~-~~~~~f~~~d~~~-L~v~t~~-~l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 244 PDG---------------DELGRVLTPQT-TSNLCFGGPEGRT-LYMTVST-EFWSIETNVRGLEH 291 (296)
T ss_dssp TTS---------------CEEEEEECSSC-CCEEEEESTTSCE-EEEEETT-EEEEEECSCCBCCC
T ss_pred CCC---------------CEEEEEECCCC-ceeEEEECCCCCE-EEEEcCC-eEEEEEcccccccc
Confidence 763 34445555666 899999 688884 5555554 45566666665543
No 169
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.70 E-value=2.1e-14 Score=124.89 Aligned_cols=241 Identities=7% Similarity=-0.008 Sum_probs=166.6
Q ss_pred ceeEEEEcCCCCcEEE-EEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 117 EVNRARCMPQKPNLVG-TKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
...++++.|++ .+++ +.+.++.|.+|+...... ......+...+.++++++++. ++++.. ++.|.+||
T Consensus 25 ~p~~i~~~~~g-~l~v~~~~~~~~i~~~~~~~~~~--------~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d 93 (270)
T 1rwi_B 25 SPSGVAVDSAG-NVYVTSEGMYGRVVKLATGSTGT--------TVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLA 93 (270)
T ss_dssp CEEEEEECTTC-CEEEEECSSSCEEEEECC-------------EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEEC
T ss_pred CccceEECCCC-CEEEEccCCCCcEEEecCCCccc--------ceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEe
Confidence 77899999998 5666 557788999998765211 111122335678999999887 666665 88999999
Q ss_pred CCCccCCceeeeeeeee-ccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEE
Q 015484 196 VSALAQDKVIDAMHVYE-AHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVL 274 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 274 (406)
...... ..+. .....+..+++++ +++++++...++.|.+|+..+.............+..+++++++. ++
T Consensus 94 ~~~~~~-------~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~ 164 (270)
T 1rwi_B 94 AGSNNQ-------TVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VY 164 (270)
T ss_dssp TTCSCC-------EECCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-EE
T ss_pred CCCceE-------eeeecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCC-EE
Confidence 875422 1111 2225688999998 567887777888999998665443222222334678899999998 77
Q ss_pred EEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEE
Q 015484 275 ATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFS 354 (406)
Q Consensus 275 ~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 354 (406)
++...++.|.+||...... ......+...+.++++++++ .++++...++.|.+|+..... ....
T Consensus 165 v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~--------------~~~~ 228 (270)
T 1rwi_B 165 VTDTDNNRVVKLEAESNNQ-VVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTT--------------STVL 228 (270)
T ss_dssp EEEGGGTEEEEECTTTCCE-EECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTCSC--------------CEEC
T ss_pred EEECCCCEEEEEecCCCce-EeecccCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCCCc--------------ceee
Confidence 7777778999999876432 22222333678999999998 477777778999999986521 1111
Q ss_pred ecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 355 HGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 355 ~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
...+...+.+++++++|. ++++...++.|+++++.....
T Consensus 229 ~~~~~~~p~~i~~~~~g~-l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 229 PFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CCCSCSCEEEEEECTTCC-EEEEEGGGTEEEEECCCGGGS
T ss_pred ccCCCCCceeEEECCCCC-EEEEECCCCEEEEEcCCCccc
Confidence 122335689999999998 888888899999999887654
No 170
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.68 E-value=1.1e-14 Score=132.64 Aligned_cols=243 Identities=8% Similarity=0.037 Sum_probs=147.7
Q ss_pred EEEEeCC--CeEEEEeCCCccccccCCCCCceeee-CCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCC-CccCCceee
Q 015484 131 VGTKTSS--CEVYVFDCAKQAEKQQDDCDPDLRLK-GHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVS-ALAQDKVID 206 (406)
Q Consensus 131 l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~ 206 (406)
+++|+.. +.|.+|++..... ......... .....+..++|+|+++ +|++++.+ .|.+|++. +++. .
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~~g----~l~~~~~~~~~~~~~~~~~a~spdg~-~l~~~~~~-~v~~~~~~~~g~~----~ 74 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDEKL----TCKLIKRTEIPQDEPISWMTFDHERK-NIYGAAMK-KWSSFAVKSPTEI----V 74 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTT----EEEEEEEEECCTTCCCSEEEECTTSS-EEEEEEBT-EEEEEEEEETTEE----E
T ss_pred EEEEEccCCCcEEEEEEECCCC----CEEEeeEEccCCCCCCcEEEECCCCC-EEEEEccc-eEEEEEECCCCCE----E
Confidence 4555543 5688887643211 111111111 2334678999999998 88888887 99999986 4422 1
Q ss_pred eeeeeeccCccEEEEEeeCCCCC--EEEEEe-------------cCCcEEEEECCC-Cccccccc----ccCCCeeEEEe
Q 015484 207 AMHVYEAHESVVEDVSWHLKNEN--LFGSAG-------------DDCQLMIWDLRT-NQTQQRVK----AHEKEVNYLSF 266 (406)
Q Consensus 207 ~~~~~~~~~~~i~~i~~~p~~~~--~l~~~~-------------~dg~i~i~d~~~-~~~~~~~~----~~~~~v~~i~~ 266 (406)
.......+ +.+..++|+|+ ++ +++++. .+|.+.+|++.. ++....+. .+...+.+++|
T Consensus 75 ~~~~~~~~-g~~~~~~~spd-g~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 152 (365)
T 1jof_A 75 HEASHPIG-GHPRANDADTN-TRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVF 152 (365)
T ss_dssp EEEEEECC-SSGGGGCTTSC-CEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEE
T ss_pred EeeEeecC-CCCccEEECCC-CCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEE
Confidence 11111111 23556899994 55 344443 689999999974 55433332 24567899999
Q ss_pred cCCCCcEEEEEe-CCCcEEEEeCC-CCCCC-cEEec--CCCCCeEEEEEcCCCCCEEEEEe-CCCcEEEEeCCCC-Cccc
Q 015484 267 NPYNEWVLATAS-SDTTVALFDMR-KMTVP-LHILS--SHTEEVFQVEWDPNHETVLASSA-DDRRLMVWDLNRI-GDEQ 339 (406)
Q Consensus 267 ~~~~~~~l~~~~-~dg~i~vwd~~-~~~~~-~~~~~--~h~~~v~~i~~~p~~~~~l~s~~-~dg~i~iwd~~~~-~~~~ 339 (406)
+|+|+ +|+++. .++.|++||+. +++.. +..+. .|...+..++|+|+++. |++++ .++.|.+|++... +...
T Consensus 153 spdG~-~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~-l~v~~~~~~~v~v~~~~~~~g~~~ 230 (365)
T 1jof_A 153 DPTET-YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNY-LYALMEAGNRICEYVIDPATHMPV 230 (365)
T ss_dssp CTTSS-EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSE-EEEEETTTTEEEEEEECTTTCCEE
T ss_pred CCCCC-EEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCE-EEEEECCCCeEEEEEEeCCCCcEE
Confidence 99998 566554 46799999998 44321 22233 24567999999999985 55544 5789999987531 1100
Q ss_pred ccccccCCCCeeEEEe----cCCCC------CeeeEE-eCCCCCcEEEEEeCCC-----cEEEEeCC-Cccc
Q 015484 340 LELDAEDGPPELLFSH----GGHKA------KISDFS-WNKNDPWVISSVADDN-----TVQVWQMT-DSIY 394 (406)
Q Consensus 340 ~~~~~~~~~~~~~~~~----~~h~~------~v~~~~-~s~~~~~~l~s~~~dg-----~i~iw~~~-~~~~ 394 (406)
.. ...+... .+|.. .+..++ |+|+|++++++...++ .|.+|++. ++.+
T Consensus 231 ~~-------~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~ 295 (365)
T 1jof_A 231 YT-------HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI 295 (365)
T ss_dssp EE-------EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE
T ss_pred Ec-------cceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCE
Confidence 00 0001111 12222 488999 9999996544443333 89999996 4443
No 171
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.68 E-value=2.1e-13 Score=122.38 Aligned_cols=236 Identities=8% Similarity=0.020 Sum_probs=157.4
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC---
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD--- 188 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d--- 188 (406)
..+...+.+++|+|++ .+++++..++.|.+|+...... ......+...+.+++|++++. ++++...+
T Consensus 41 ~~~~~~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~~~~--------~~~~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~ 110 (333)
T 2dg1_A 41 SKKGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPETKEI--------KRPFVSHKANPAAIKIHKDGR-LFVCYLGDFKS 110 (333)
T ss_dssp ESSCCCEEEEEECTTS-CEEEEETTTCEEEEECTTTCCE--------EEEEECSSSSEEEEEECTTSC-EEEEECTTSSS
T ss_pred eccCccccCcEECCCC-CEEEEECCCCEEEEEeCCCCcE--------EEEeeCCCCCcceEEECCCCc-EEEEeCCCCCC
Confidence 3466778999999998 5777888899999999876321 122224567899999999987 77776666
Q ss_pred -CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec------CCcEEEEECCCCcccccccccCCCe
Q 015484 189 -NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD------DCQLMIWDLRTNQTQQRVKAHEKEV 261 (406)
Q Consensus 189 -g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~v 261 (406)
+.|.+||..++.....+ . .......+.+++++| +++++++... .+.|..+|..+++.. .+......+
T Consensus 111 ~~~i~~~d~~~~~~~~~~---~-~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~ 184 (333)
T 2dg1_A 111 TGGIFAATENGDNLQDII---E-DLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVA 184 (333)
T ss_dssp CCEEEEECTTSCSCEEEE---C-SSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSE
T ss_pred CceEEEEeCCCCEEEEEE---c-cCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEE-EeecCCCcc
Confidence 68999998775431111 0 012345789999998 5677766553 356777776654432 222233457
Q ss_pred eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEE--------ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 015484 262 NYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHI--------LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLN 333 (406)
Q Consensus 262 ~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--------~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~ 333 (406)
..++|+|++..++++.+.++.|.+||+......+.. +..+ ..+..+++++++. ++++...++.|.+||..
T Consensus 185 ~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 185 NGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDN-LYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp EEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCC-EEEEEETTTEEEEECTT
T ss_pred cceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCC-EEEEEcCCCEEEEECCC
Confidence 899999999845555566789999999642221211 1122 4678899999996 67777778999999974
Q ss_pred CCCcccccccccCCCCeeEEEecC------CCCCeeeEEeCCCCCcEEEEEeC
Q 015484 334 RIGDEQLELDAEDGPPELLFSHGG------HKAKISDFSWNKNDPWVISSVAD 380 (406)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~------h~~~v~~~~~s~~~~~~l~s~~~ 380 (406)
. ..+..+.. |...+.+++|+|++..+++++..
T Consensus 263 g---------------~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 263 G---------------YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp S---------------CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred C---------------CEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 3 22222222 22368999999998755555543
No 172
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.68 E-value=3.8e-15 Score=146.71 Aligned_cols=237 Identities=11% Similarity=-0.001 Sum_probs=152.2
Q ss_pred EEEEc--CCCCc-EEEEEeCCCeEEEEeCC--C-ccccccCCCCCceeeeC-----CCCCeeEEEecCCCCCeEEEecCC
Q 015484 120 RARCM--PQKPN-LVGTKTSSCEVYVFDCA--K-QAEKQQDDCDPDLRLKG-----HDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 120 ~i~~~--p~~~~-~l~~~~~dg~i~iw~~~--~-~~~~~~~~~~~~~~~~~-----h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
...|+ |++.. ++++...+..|+++++. . .. ...+.. |...+.+++|+|+|+ .|++++.+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~---------~~~l~~~~~~~~~~~~~~~~~spDg~-~l~~~~~~ 150 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV---------PRPLTPVSAVGGGLRWADPVLLPERG-EVWCMAEE 150 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC---------CEECSCCCCSTTCEEEEEEEEETTTT-EEEEEEEE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC---------CEeccCCccCCCCccccCcEECCCCC-EEEEEEec
Confidence 45555 99965 44444446677777765 1 11 233333 566788999999998 88888776
Q ss_pred ----------CeEEEEeCCC------ccCCceeeeeeeee-ccCccEEEEEeeCCCCCEEEEEecC--------CcEEEE
Q 015484 189 ----------NKICLWDVSA------LAQDKVIDAMHVYE-AHESVVEDVSWHLKNENLFGSAGDD--------CQLMIW 243 (406)
Q Consensus 189 ----------g~i~iwd~~~------~~~~~~~~~~~~~~-~~~~~i~~i~~~p~~~~~l~~~~~d--------g~i~i~ 243 (406)
..|.+||+.+ +.. ..+. .+...+..++|+| +++.|+.++.+ ..|++|
T Consensus 151 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~ 222 (662)
T 3azo_A 151 FTGEGPSDVRRFLAAVPLDGSAAADRSAV-------RELSDDAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTA 222 (662)
T ss_dssp ECSSSTTCEEEEEEEEETTSTTTTCGGGS-------EESSCSCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEE
T ss_pred ccCCCCCCceeEEEEEECCCCccccCCce-------eEEEecCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEE
Confidence 5899999987 322 2223 4456788899999 66777666644 379999
Q ss_pred ECC-CC---cccccccccCCCeeEEEecCCCCcEEEEEeCCC--cEEEEeCCCCCCCcEEecCCCCC---------eEEE
Q 015484 244 DLR-TN---QTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT--TVALFDMRKMTVPLHILSSHTEE---------VFQV 308 (406)
Q Consensus 244 d~~-~~---~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~h~~~---------v~~i 308 (406)
|+. ++ +.......+...+..++|+|+|+ +++++..++ .|.+||+..+. ...+..+... +..+
T Consensus 223 d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~--~~~l~~~~~~~~~p~w~~~~~~~ 299 (662)
T 3azo_A 223 RVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGA--ATQLCRREEEFAGPLWTPGMRWF 299 (662)
T ss_dssp EECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCC--EEESSCCSSBSSCCCCSTTCCSE
T ss_pred EECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCc--eeecccccccccCccccccCceE
Confidence 998 56 33333344567899999999999 888888888 56666664433 3333322221 5678
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeE-EeCCCCCcEEEEEeCCCc--EE
Q 015484 309 EWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDF-SWNKNDPWVISSVADDNT--VQ 385 (406)
Q Consensus 309 ~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~-~~s~~~~~~l~s~~~dg~--i~ 385 (406)
+|+|++. ++++++. +.++||.+.... ..+..+..|...+..+ +++++.- ++++++.+.. |.
T Consensus 300 ~~~~~~~-~~~~~~~-~~~~l~~~d~~~-------------~~~~~l~~~~~~~~~~~s~~~~~~-~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 300 APLANGL-IAVVHGK-GAAVLGILDPES-------------GELVDAAGPWTEWAATLTVSGTRA-VGVAASPRTAYEVV 363 (662)
T ss_dssp EECTTSC-EEEEEBS-SSCEEEEEETTT-------------TEEEECCSSCCEEEEEEEEETTEE-EEEEEETTEEEEEE
T ss_pred eEeCCCE-EEEEEEc-CccEEEEEECCC-------------CcEEEecCCCCeEEEEEecCCCEE-EEEEcCCCCCCEEE
Confidence 8999886 7888888 999999543211 1133445566667666 4443322 4444555544 55
Q ss_pred EEeCCCcc
Q 015484 386 VWQMTDSI 393 (406)
Q Consensus 386 iw~~~~~~ 393 (406)
+|++.++.
T Consensus 364 ~~d~~~g~ 371 (662)
T 3azo_A 364 ELDTVTGR 371 (662)
T ss_dssp EEETTTCC
T ss_pred EEECCCCc
Confidence 55665654
No 173
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.67 E-value=1.1e-14 Score=130.85 Aligned_cols=247 Identities=11% Similarity=0.083 Sum_probs=167.1
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
..|.+++|+|++ ..++..+.++.++.|.-.. ...+..+...+.+++|++++. +++++..++.|.+||
T Consensus 6 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d 72 (333)
T 2dg1_A 6 QDLPTLFYSGKS-NSAVPIISESELQTITAEP-----------WLEISKKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKIN 72 (333)
T ss_dssp CCCCBCCSCGGG-GCSSCCCCGGGSCEEECEE-----------EEEEESSCCCEEEEEECTTSC-EEEEETTTCEEEEEC
T ss_pred cccceeeecCCc-cceeEEeecccCcccccce-----------eEEEeccCccccCcEECCCCC-EEEEECCCCEEEEEe
Confidence 457888999987 4455557788888883222 455666777789999999887 888888899999999
Q ss_pred CCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC----CcEEEEECCCCccccccc--ccCCCeeEEEecCC
Q 015484 196 VSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD----CQLMIWDLRTNQTQQRVK--AHEKEVNYLSFNPY 269 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~--~~~~~v~~i~~~~~ 269 (406)
..++... .....+...+.+++++| +++++++...+ +.|.+||..++.....+. .....+..++++|+
T Consensus 73 ~~~~~~~------~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~ 145 (333)
T 2dg1_A 73 PETKEIK------RPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSK 145 (333)
T ss_dssp TTTCCEE------EEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTT
T ss_pred CCCCcEE------EEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCC
Confidence 8765321 11123456799999998 56777776666 689999998776532221 23457899999999
Q ss_pred CCcEEEEEeC------CCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccccc
Q 015484 270 NEWVLATASS------DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELD 343 (406)
Q Consensus 270 ~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 343 (406)
+. ++++... .+.|..+|..... +..+..+...+..++|+|+++.++++.+.++.|.+||+...+.......
T Consensus 146 g~-l~v~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~ 222 (333)
T 2dg1_A 146 GG-FYFTDFRGYSTNPLGGVYYVSPDFRT--VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFG 222 (333)
T ss_dssp SC-EEEEECCCBTTBCCEEEEEECTTSCC--EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEE
T ss_pred CC-EEEEeccccccCCCceEEEEeCCCCE--EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCccccc
Confidence 98 6665543 2456666655422 3333333446889999999976566666788999999864221110000
Q ss_pred ccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 344 AEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 344 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
........++ ..+..++++++|. ++++...++.|.+|+....
T Consensus 223 -----~~~~~~~~~~-~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~g~ 264 (333)
T 2dg1_A 223 -----ATIPYYFTGH-EGPDSCCIDSDDN-LYVAMYGQGRVLVFNKRGY 264 (333)
T ss_dssp -----EEEEEECCSS-SEEEEEEEBTTCC-EEEEEETTTEEEEECTTSC
T ss_pred -----ceEEEecCCC-CCCCceEECCCCC-EEEEEcCCCEEEEECCCCC
Confidence 0111122222 4578899999998 6777777889999998644
No 174
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.66 E-value=3.8e-14 Score=140.68 Aligned_cols=250 Identities=9% Similarity=-0.009 Sum_probs=162.6
Q ss_pred cCCceeEEEEcCCCCcEEEEEeC-CC----eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTS-SC----EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~-dg----~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
|...+..++|+|+|. +||.+.. .| .|++||+.+..... ..+.. ..+.+++|+|+|+ .|+.++.+
T Consensus 123 ~~~~~~~~~~SPDg~-~la~~~~~~G~~~~~i~v~d~~tg~~~~-------~~~~~--~~~~~~~wspDg~-~l~~~~~~ 191 (710)
T 2xdw_A 123 GTVALRGYAFSEDGE-YFAYGLSASGSDWVTIKFMKVDGAKELP-------DVLER--VKFSCMAWTHDGK-GMFYNAYP 191 (710)
T ss_dssp SCEEEEEEEECTTSS-EEEEEEEETTCSCEEEEEEETTTTEEEE-------EEEEE--ECSCCEEECTTSS-EEEEEECC
T ss_pred CCEEEEEEEECCCCC-EEEEEEcCCCCceEEEEEEECCCCCCCc-------ccccC--cccceEEEEeCCC-EEEEEEEC
Confidence 334688999999995 5665544 33 89999998743211 11221 2267899999998 78777776
Q ss_pred Ce----------------EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec-----CCcEEEEECCC
Q 015484 189 NK----------------ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD-----DCQLMIWDLRT 247 (406)
Q Consensus 189 g~----------------i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-----dg~i~i~d~~~ 247 (406)
+. |++|++.++..... .+.....+...+..+.|+| +++.|+.++. +..|++||+.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~--~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~ 268 (710)
T 2xdw_A 192 QQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI--LCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQ 268 (710)
T ss_dssp CCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE--EEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred CccccccccccccCCCCEEEEEECCCCcccce--EEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcc
Confidence 65 99999987643211 1111222455678899999 5565555543 56899999986
Q ss_pred ------Cc-ccccccccCCCeeEEEecCCCCcEEEEEeCC---CcEEEEeCCCCCC-CcEEecCCCC--CeEEEEEcCCC
Q 015484 248 ------NQ-TQQRVKAHEKEVNYLSFNPYNEWVLATASSD---TTVALFDMRKMTV-PLHILSSHTE--EVFQVEWDPNH 314 (406)
Q Consensus 248 ------~~-~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~-~~~~~~~h~~--~v~~i~~~p~~ 314 (406)
+. ....+..+...+.. .|+|+|..+++.+..+ +.|.+||+.+... ....+..|.. .+..+.|++++
T Consensus 269 ~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 347 (710)
T 2xdw_A 269 ESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN 347 (710)
T ss_dssp SSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT
T ss_pred cccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC
Confidence 43 34555555555544 4888888444444433 3699999987541 1345555544 68889999665
Q ss_pred CCEEEEEeCCCc--EEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeC---CCcEEEEeC
Q 015484 315 ETVLASSADDRR--LMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVAD---DNTVQVWQM 389 (406)
Q Consensus 315 ~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~---dg~i~iw~~ 389 (406)
.++++...|+. |.+|++... ..+..+..+...+..++++|++..++++.+. .+.|.+||+
T Consensus 348 -~lv~~~~~~g~~~l~~~~~~~g--------------~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 348 -FLVLCYLHDVKNTLQLHDLATG--------------ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL 412 (710)
T ss_dssp -EEEEEEEETTEEEEEEEETTTC--------------CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred -EEEEEEEECCEEEEEEEECCCC--------------CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 47888888885 455565331 2233444556678899999998755555443 478999999
Q ss_pred CCcc
Q 015484 390 TDSI 393 (406)
Q Consensus 390 ~~~~ 393 (406)
.++.
T Consensus 413 ~tg~ 416 (710)
T 2xdw_A 413 TKEE 416 (710)
T ss_dssp TSSS
T ss_pred CCCc
Confidence 8765
No 175
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.63 E-value=6.5e-14 Score=127.23 Aligned_cols=225 Identities=10% Similarity=0.033 Sum_probs=139.0
Q ss_pred CCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec----------CCCeEEEEeCCCccCCcee
Q 015484 136 SSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS----------HDNKICLWDVSALAQDKVI 205 (406)
Q Consensus 136 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~ 205 (406)
.|+.|++||..+. +....+..+..+ .++|+|+++ +++++. .++.|.+||+.+.+....+
T Consensus 29 ~d~~v~v~D~~t~--------~~~~~i~~g~~p--~i~~spdg~-~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i 97 (361)
T 2oiz_A 29 TESRVHVYDYTNG--------KFLGMVPTAFNG--HVQVSNDGK-KIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEI 97 (361)
T ss_dssp GGCEEEEEETTTC--------CEEEEEECCEEE--EEEECTTSS-EEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEE
T ss_pred ccCeEEEEECCCC--------eEEEEecCCCCC--ceEECCCCC-EEEEEEecccccccCCCCCEEEEEECcCCcEEEEE
Confidence 3779999998763 234556555544 899999998 777775 3678999998875432222
Q ss_pred eeeeeeeccCccEEEEEeeCCCCCEEEEEec--CCcEEEEECCCCccccc-ccccCCCeeEEEecCCCCcEEEEEeCCCc
Q 015484 206 DAMHVYEAHESVVEDVSWHLKNENLFGSAGD--DCQLMIWDLRTNQTQQR-VKAHEKEVNYLSFNPYNEWVLATASSDTT 282 (406)
Q Consensus 206 ~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~l~~~~~dg~ 282 (406)
........+......++++| ++++++++.. ++.|.+||+.+++.+.. +... ....+.+.|.+...+++.+.||.
T Consensus 98 ~~~~~~~~~g~~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~ 174 (361)
T 2oiz_A 98 SLPPKRVQGLNYDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDGG 174 (361)
T ss_dssp EECTTBCCBCCCGGGEEECT-TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTSS
T ss_pred EcCccccccCCCcceEEECC-CCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCCc
Confidence 11000000224567789999 5666666553 68999999999887766 5321 11223445544334555555555
Q ss_pred EEEEeCCCCCCCc-------------------------------------------------EEecC------C----CC
Q 015484 283 VALFDMRKMTVPL-------------------------------------------------HILSS------H----TE 303 (406)
Q Consensus 283 i~vwd~~~~~~~~-------------------------------------------------~~~~~------h----~~ 303 (406)
+.+|++....... ..+.. + ..
T Consensus 175 ~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 254 (361)
T 2oiz_A 175 LLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPG 254 (361)
T ss_dssp EEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEEC
T ss_pred EEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccC
Confidence 5555543211100 00000 0 00
Q ss_pred CeEEEEEcCCCCCEEEEEeC----------CCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCc
Q 015484 304 EVFQVEWDPNHETVLASSAD----------DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPW 373 (406)
Q Consensus 304 ~v~~i~~~p~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 373 (406)
....++|+|+++.++++... .+.|.+||+.+ .+.+..+..+. +.+++|+|+|+
T Consensus 255 g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t--------------~~~v~~i~~~~--p~~ia~spdg~- 317 (361)
T 2oiz_A 255 GYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT--------------KQRVARIPGRD--ALSMTIDQQRN- 317 (361)
T ss_dssp CSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT--------------TEEEEEEECTT--CCEEEEETTTT-
T ss_pred CeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC--------------CcEEEEEecCC--eeEEEECCCCC-
Confidence 01126788888765555441 34799999876 45666666665 99999999999
Q ss_pred EEEEEeCCCcEEEEeCCCc
Q 015484 374 VISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 374 ~l~s~~~dg~i~iw~~~~~ 392 (406)
+|++++. +.|.+||+.++
T Consensus 318 ~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 318 LMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp EEEEECS-SCEEEEECSSS
T ss_pred EEEEeCC-CeEEEEECCCC
Confidence 5666665 99999999988
No 176
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.62 E-value=7.8e-15 Score=134.86 Aligned_cols=240 Identities=12% Similarity=0.121 Sum_probs=149.2
Q ss_pred CceeEEEEcCCCCcEEEEEeCC--CeEEEEeCCCccccccCCCCCceeeeCCCCC-eeEEEecCCCCCeEEEecCCCeEE
Q 015484 116 GEVNRARCMPQKPNLVGTKTSS--CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKE-GYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
..+..++|+|+|..++++...+ ..|.+|++..... ..+..+... ...+.|+|+++ .|+.++.++.|.
T Consensus 36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~---------~~l~~~~~~~~~~~~~spdg~-~l~~~~~~~~l~ 105 (396)
T 3c5m_A 36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA---------VQLTEGKGDNTFGGFISTDER-AFFYVKNELNLM 105 (396)
T ss_dssp CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE---------EECCCSSCBCTTTCEECTTSS-EEEEEETTTEEE
T ss_pred eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE---------EEeecCCCCccccceECCCCC-EEEEEEcCCcEE
Confidence 3477889999996444444333 3688888876321 222223333 33478999998 898888889999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEE-------------------EEeeCCCCCEEEEE-----ecCCcEEEEECCCC
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVED-------------------VSWHLKNENLFGSA-----GDDCQLMIWDLRTN 248 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~-------------------i~~~p~~~~~l~~~-----~~dg~i~i~d~~~~ 248 (406)
+||+.++.... ....+...... +.|+|+ ++.++.+ ..+..|.+||+.++
T Consensus 106 ~~d~~~~~~~~------~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spd-g~~~~~~~~~~~~~~~~l~~~d~~~g 178 (396)
T 3c5m_A 106 KVDLETLEEQV------IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPL-TSWEKFAEFYHTNPTCRLIKVDIETG 178 (396)
T ss_dssp EEETTTCCEEE------EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCC-CSHHHHHHHHHTCCCEEEEEEETTTC
T ss_pred EEECCCCCcEE------EEecccccCCCCCEEEeccCCccccccccccccCCC-CcceeeeeeccCCCcceEEEEECCCC
Confidence 99998754211 11112222222 356663 4443332 35668999999887
Q ss_pred cccccccccCCCeeEEEecC-CCCcEEEEEeCC------CcEEEEeCCCCCCCcEEecCCC--CCeEEEEEcCCCCCEEE
Q 015484 249 QTQQRVKAHEKEVNYLSFNP-YNEWVLATASSD------TTVALFDMRKMTVPLHILSSHT--EEVFQVEWDPNHETVLA 319 (406)
Q Consensus 249 ~~~~~~~~~~~~v~~i~~~~-~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~h~--~~v~~i~~~p~~~~~l~ 319 (406)
+..... .+...+..+.|+| ++. .|+..+.+ ..|.+||+.... ...+..+. ..+..+.|+|+++.+++
T Consensus 179 ~~~~~~-~~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~spdg~~l~~ 254 (396)
T 3c5m_A 179 ELEVIH-QDTAWLGHPIYRPFDDS-TVGFCHEGPHDLVDARMWLVNEDGSN--VRKIKEHAEGESCTHEFWIPDGSAMAY 254 (396)
T ss_dssp CEEEEE-EESSCEEEEEEETTEEE-EEEEEECSCSSSCSCCCEEEETTSCC--CEESSCCCTTEEEEEEEECTTSSCEEE
T ss_pred cEEeec-cCCcccccceECCCCCC-EEEEEecCCCCCCCceEEEEECCCCc--eeEeeccCCCccccceEECCCCCEEEE
Confidence 754333 4567789999999 676 55554443 368888986543 33333332 35788999999986444
Q ss_pred EEeCC----CcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCC-CCCcEEEEEe---------------
Q 015484 320 SSADD----RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNK-NDPWVISSVA--------------- 379 (406)
Q Consensus 320 s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~~l~s~~--------------- 379 (406)
++..+ +.|.+||+..... ..+....+ .. +.|+| +|+ ++++++
T Consensus 255 ~~~~~~~~~~~l~~~d~~~g~~------------~~l~~~~~----~~-~~~s~~dg~-~l~~~~~~~p~~~~~~~~~~~ 316 (396)
T 3c5m_A 255 VSYFKGQTDRVIYKANPETLEN------------EEVMVMPP----CS-HLMSNFDGS-LMVGDGCDAPVDVADADSYNI 316 (396)
T ss_dssp EEEETTTCCEEEEEECTTTCCE------------EEEEECCS----EE-EEEECSSSS-EEEEEECCC----------CC
T ss_pred EecCCCCccceEEEEECCCCCe------------EEeeeCCC----CC-CCccCCCCc-eEEEecCCcceeecccccccc
Confidence 43332 4499999876221 12222221 22 89999 999 455543
Q ss_pred -CCCcEEEEeCCCccc
Q 015484 380 -DDNTVQVWQMTDSIY 394 (406)
Q Consensus 380 -~dg~i~iw~~~~~~~ 394 (406)
.++.|.+|++.++..
T Consensus 317 ~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 317 ENDPFLYVLNTKAKSA 332 (396)
T ss_dssp CCCCEEEEEETTTTBC
T ss_pred CCCCcEEEEecccCce
Confidence 347899999987754
No 177
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.62 E-value=2.3e-14 Score=131.65 Aligned_cols=239 Identities=8% Similarity=0.037 Sum_probs=144.8
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeE-------------------EEecCCCCC
Q 015484 120 RARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYG-------------------LSWSPFKEG 180 (406)
Q Consensus 120 ~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~-------------------l~~~~~~~~ 180 (406)
.+.|+|++ ..|+.++.++.|++|++..... ......+...... +.|+|+++
T Consensus 85 ~~~~spdg-~~l~~~~~~~~l~~~d~~~~~~--------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~- 154 (396)
T 3c5m_A 85 GGFISTDE-RAFFYVKNELNLMKVDLETLEE--------QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS- 154 (396)
T ss_dssp TCEECTTS-SEEEEEETTTEEEEEETTTCCE--------EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS-
T ss_pred cceECCCC-CEEEEEEcCCcEEEEECCCCCc--------EEEEecccccCCCCCEEEeccCCccccccccccccCCCCc-
Confidence 47899999 5788888888999999987422 2222223322222 35677776
Q ss_pred eEEEe-----cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC------CcEEEEECCCCc
Q 015484 181 YLVSG-----SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD------CQLMIWDLRTNQ 249 (406)
Q Consensus 181 ~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d------g~i~i~d~~~~~ 249 (406)
.++.+ ..+..|.+||+.++.. ..+..+...+..+.|+|.++..|+.++.+ ..|.+||+..++
T Consensus 155 ~~~~~~~~~~~~~~~l~~~d~~~g~~-------~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~ 227 (396)
T 3c5m_A 155 WEKFAEFYHTNPTCRLIKVDIETGEL-------EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN 227 (396)
T ss_dssp HHHHHHHHHTCCCEEEEEEETTTCCE-------EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC
T ss_pred ceeeeeeccCCCcceEEEEECCCCcE-------EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc
Confidence 55443 3567899999987542 11223566788999999445544444433 468899987655
Q ss_pred cccccccc-CCCeeEEEecCCCCcEEEEEeCC----CcEEEEeCCCCCCCcEEecCCCCCeEEEEEcC-CCCCEEEEEe-
Q 015484 250 TQQRVKAH-EKEVNYLSFNPYNEWVLATASSD----TTVALFDMRKMTVPLHILSSHTEEVFQVEWDP-NHETVLASSA- 322 (406)
Q Consensus 250 ~~~~~~~~-~~~v~~i~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p-~~~~~l~s~~- 322 (406)
........ ...+..++|+|+++.+++++..+ +.|++||+.++.. ..+.... ... +.|+| +++ ++++++
T Consensus 228 ~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~--~~l~~~~-~~~-~~~s~~dg~-~l~~~~~ 302 (396)
T 3c5m_A 228 VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN--EEVMVMP-PCS-HLMSNFDGS-LMVGDGC 302 (396)
T ss_dssp CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE--EEEEECC-SEE-EEEECSSSS-EEEEEEC
T ss_pred eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe--EEeeeCC-CCC-CCccCCCCc-eEEEecC
Confidence 33222211 23578899999998444433322 3499999987542 2222112 233 89999 997 566544
Q ss_pred ---------------CCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCC-----------CeeeEEeCCCCCcEEE
Q 015484 323 ---------------DDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKA-----------KISDFSWNKNDPWVIS 376 (406)
Q Consensus 323 ---------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----------~v~~~~~s~~~~~~l~ 376 (406)
.++.|.+||+..... ..+. .+.. .+..++|+|+|+++++
T Consensus 303 ~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~------------~~l~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 367 (396)
T 3c5m_A 303 DAPVDVADADSYNIENDPFLYVLNTKAKSA------------QKLC---KHSTSWDVLDGDRQITHPHPSFTPNDDGVLF 367 (396)
T ss_dssp CC----------CCCCCCEEEEEETTTTBC------------CEEE---ECCCCCCCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred CcceeeccccccccCCCCcEEEEecccCce------------EEcc---CCCCccccccccccCCCCCceEccCCCeEEE
Confidence 347899999875221 1111 1222 2567899999996555
Q ss_pred EEeCCCcEEEEe--CCCcccC
Q 015484 377 SVADDNTVQVWQ--MTDSIYR 395 (406)
Q Consensus 377 s~~~dg~i~iw~--~~~~~~~ 395 (406)
++..++...||. +.++...
T Consensus 368 ~s~~~~~~~l~~~~~~~~~~~ 388 (396)
T 3c5m_A 368 TSDFEGVPAIYIADVPESYKH 388 (396)
T ss_dssp EECTTSSCEEEEEECCTTCC-
T ss_pred EecCCCCceEEEEEEcccccc
Confidence 555566666665 4454443
No 178
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.61 E-value=6.4e-14 Score=138.66 Aligned_cols=249 Identities=6% Similarity=-0.091 Sum_probs=159.3
Q ss_pred cCCceeEEEEcCCCCcEEE-----EEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 114 VDGEVNRARCMPQKPNLVG-----TKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~-----~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
|...+..++|+|+|. +|| .|+.+.+|++||+.++.... ...+... ....++|+|+|+ .|+.++.|
T Consensus 119 ~~~~~~~~~~SPDG~-~la~~~~~~G~~~~~i~v~dl~tg~~~~------~~~~~~~--~~~~~~wspDg~-~l~~~~~d 188 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGK-KVAFAQKPNAADEAVLHVIDVDSGEWSK------VDVIEGG--KYATPKWTPDSK-GFYYEWLP 188 (695)
T ss_dssp SCEEEEEEEECTTSS-EEEEEEEETTCSCCEEEEEETTTCCBCS------SCCBSCC--TTCCCEECTTSS-EEEEEECC
T ss_pred CCEEEEEEEECCCCC-EEEEEECCCCCceEEEEEEECCCCCCcC------CcccCcc--cccceEEecCCC-EEEEEEec
Confidence 555789999999995 565 33334689999998843210 0011111 126889999998 88888877
Q ss_pred Ce-------------EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC----cEEEEECCCCccc
Q 015484 189 NK-------------ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC----QLMIWDLRTNQTQ 251 (406)
Q Consensus 189 g~-------------i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg----~i~i~d~~~~~~~ 251 (406)
.. |++|++.++..... .+.....+...+..+.|+|++ +.++.++.++ .|.++|..+++ .
T Consensus 189 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~--lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~~~~-~ 264 (695)
T 2bkl_A 189 TDPSIKVDERPGYTTIRYHTLGTEPSKDT--VVHERTGDPTTFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPGEKD-F 264 (695)
T ss_dssp CCTTSCGGGGGGGCEEEEEETTSCGGGCE--EEECCCCCTTCEEEEEECTTS-CCEEEEEEETTTEEEEEEECTTCSS-C
T ss_pred CCCCCccccCCCCCEEEEEECCCCchhce--EEEecCCCCEEEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCCCCc-e
Confidence 66 99999987653211 122223345678899999954 5555555444 67777665544 3
Q ss_pred ccccccCCCeeEEEecCCCCcEEEEEe---CCCcEEEEeCCCCCC-CcEEecCC--CCCeEEEEEcCCCCCEEEEEeCCC
Q 015484 252 QRVKAHEKEVNYLSFNPYNEWVLATAS---SDTTVALFDMRKMTV-PLHILSSH--TEEVFQVEWDPNHETVLASSADDR 325 (406)
Q Consensus 252 ~~~~~~~~~v~~i~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~-~~~~~~~h--~~~v~~i~~~p~~~~~l~s~~~dg 325 (406)
..+..+...+....+ +++. +++.+. .++.|.+||+.++.. ....+..+ ...+..++|+ ++ .++++...|+
T Consensus 265 ~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~-~lv~~~~~dg 340 (695)
T 2bkl_A 265 RLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG-HLSLEYLKDA 340 (695)
T ss_dssp EEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT-EEEEEEEETT
T ss_pred EEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC-EEEEEEEECC
Confidence 444445555666666 5676 666655 257899999976542 12334333 4457888888 44 5889999999
Q ss_pred cEEEEeCCCCCcccccccccCCCCeeEEEecCC-CCCeeeEEeCCCCCcEEEEEeC---CCcEEEEeCCCcc
Q 015484 326 RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH-KAKISDFSWNKNDPWVISSVAD---DNTVQVWQMTDSI 393 (406)
Q Consensus 326 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~~l~s~~~---dg~i~iw~~~~~~ 393 (406)
..+||.+...+ .....+..+ ...|..++++|+++.++++.+. .+.|++||+.++.
T Consensus 341 ~~~l~~~~~~g-------------~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 341 TSEVRVATLKG-------------KPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEEEEEETTC-------------CEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEEEEEeCCC-------------CeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 98888765311 122222333 5568889999998755544433 4679999998764
No 179
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.60 E-value=2.8e-13 Score=118.84 Aligned_cols=207 Identities=13% Similarity=0.186 Sum_probs=144.7
Q ss_pred CCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec-CCcEEE
Q 015484 164 GHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD-DCQLMI 242 (406)
Q Consensus 164 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-dg~i~i 242 (406)
++-....++++++++. ++++...++.|.+||... .....+........+...+..+++.+.++.++++... ++.|.+
T Consensus 27 g~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~g-~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQND-IIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TCBSCEEEEEECTTCC-EEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CccCCCceEEECCCCC-EEEEECCCCEEEEECCCC-cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 3445688999999887 888888899999999763 2111111000001233568899995436677766643 889999
Q ss_pred EECCCCccccccc-ccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec--CCCCCeEEEEEcCCCCCEEE
Q 015484 243 WDLRTNQTQQRVK-AHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILS--SHTEEVFQVEWDPNHETVLA 319 (406)
Q Consensus 243 ~d~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~h~~~v~~i~~~p~~~~~l~ 319 (406)
|| .+++.+..+. .+...+..++++|++. ++++...++.|.+||... . .+..+. .+...+..++++|+++ +++
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g-~-~~~~~~~~~~~~~p~~i~~~~~g~-l~v 179 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNG-N-VLHKFGCSKHLEFPNGVVVNDKQE-IFI 179 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTS-C-EEEEEECTTTCSSEEEEEECSSSE-EEE
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCCC-C-EEEEeCCCCccCCcEEEEECCCCC-EEE
Confidence 99 5566555553 2345688999999998 777777788999999653 2 233432 3445789999999986 777
Q ss_pred EEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEec--CCCCCeeeEEeCCCCCcEEEEEeCCC-cEEEEeCCCcc
Q 015484 320 SSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG--GHKAKISDFSWNKNDPWVISSVADDN-TVQVWQMTDSI 393 (406)
Q Consensus 320 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~~l~s~~~dg-~i~iw~~~~~~ 393 (406)
+...++.|.+||... ..+..+. ++...+..++++++|. ++++...++ .|.+|+.....
T Consensus 180 ~~~~~~~i~~~~~~g---------------~~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~~~~g~~ 240 (286)
T 1q7f_A 180 SDNRAHCVKVFNYEG---------------QYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDGQL 240 (286)
T ss_dssp EEGGGTEEEEEETTC---------------CEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTSCE
T ss_pred EECCCCEEEEEcCCC---------------CEEEEEccCCccCCCcEEEECCCCC-EEEEeCCCCEEEEEECCCCCE
Confidence 778899999999753 2233332 2335788999999998 777777775 99999976543
No 180
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.59 E-value=5.5e-12 Score=110.98 Aligned_cols=242 Identities=7% Similarity=-0.021 Sum_probs=166.2
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
.+...+.++++.+++ .+.++...++.|.+|+... ... ...+..+...+.++++.+++. ++++...++.|.
T Consensus 12 ~~~~~~~~i~~d~~g-~l~v~~~~~~~v~~~d~~~-~~~-------~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~ 81 (299)
T 2z2n_A 12 NQDTGPYGITVSDKG-KVWITQHKANMISCINLDG-KIT-------EYPLPTPDAKVMCLTISSDGE-VWFTENAANKIG 81 (299)
T ss_dssp SSSCCEEEEEECTTS-CEEEEETTTTEEEEECTTC-CEE-------EEECSSTTCCEEEEEECTTSC-EEEEETTTTEEE
T ss_pred CcCCCccceEECCCC-CEEEEecCCCcEEEEcCCC-CeE-------EecCCcccCceeeEEECCCCC-EEEeCCCCCeEE
Confidence 345789999999998 5666655578899999872 111 111223456789999999887 777777688999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccc-ccccCCCeeEEEecCCCC
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQR-VKAHEKEVNYLSFNPYNE 271 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~i~~~~~~~ 271 (406)
.|+... . +.. .........+..+++.+ ++.++++...++.|..||. +++.... .......+..+++++++.
T Consensus 82 ~~~~~g-~----~~~-~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~ 153 (299)
T 2z2n_A 82 RITKKG-I----IKE-YTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA 153 (299)
T ss_dssp EECTTS-C----EEE-EECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC
T ss_pred EECCCC-c----EEE-EeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC
Confidence 999752 1 111 11112345788999998 5778877777889999998 4443221 222345688999999987
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCee
Q 015484 272 WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPEL 351 (406)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 351 (406)
++++...++.|..||. ++.........+...+.++++++++. +.++...++.|.+||. ... ..
T Consensus 154 -l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~-------------~~ 216 (299)
T 2z2n_A 154 -LWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITT-SGE-------------IT 216 (299)
T ss_dssp -EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCC-------------EE
T ss_pred -EEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCC-EEEEccCCceEEEECC-CCc-------------EE
Confidence 7776666789999998 43321111333456789999999986 6666667889999998 311 11
Q ss_pred EEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 352 LFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 352 ~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
......+...+.+++++++|. ++++...++.|..|+..
T Consensus 217 ~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 217 EFKIPTPNARPHAITAGAGID-LWFTEWGANKIGRLTSN 254 (299)
T ss_dssp EEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEEETT
T ss_pred EEECCCCCCCceeEEECCCCC-EEEeccCCceEEEECCC
Confidence 112233456789999999998 67776667889999984
No 181
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.59 E-value=5.6e-14 Score=140.07 Aligned_cols=201 Identities=10% Similarity=0.125 Sum_probs=129.9
Q ss_pred eEEEEcCCCCcEEEEEeCC---------CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 119 NRARCMPQKPNLVGTKTSS---------CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 119 ~~i~~~p~~~~~l~~~~~d---------g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
..++|+|++ ..|+.++.+ +.+.+||+.+... ..+..|...+...+|||+|+ .||.+ .++
T Consensus 65 ~~~~~Spdg-~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~---------~~l~~~~~~~~~~~~SPdG~-~la~~-~~~ 132 (740)
T 4a5s_A 65 NDYSISPDG-QFILLEYNYVKQWRHSYTASYDIYDLNKRQL---------ITEERIPNNTQWVTWSPVGH-KLAYV-WNN 132 (740)
T ss_dssp CEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTTEE---------CCSSCCCTTEEEEEECSSTT-CEEEE-ETT
T ss_pred cceEECCCC-CEEEEEECCeeeEEEccceEEEEEECCCCcE---------EEcccCCCcceeeEECCCCC-EEEEE-ECC
Confidence 458899999 467777765 5678999988432 23556777899999999999 88877 468
Q ss_pred eEEEEeCCCccCCceeee----eeeeeccC---------ccEEEEEeeCCCCCEEEEEecC-C-----------------
Q 015484 190 KICLWDVSALAQDKVIDA----MHVYEAHE---------SVVEDVSWHLKNENLFGSAGDD-C----------------- 238 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~----~~~~~~~~---------~~i~~i~~~p~~~~~l~~~~~d-g----------------- 238 (406)
.|.+|++.++... .+.. ...+.++. .....+.|+| +++.|+.++.| +
T Consensus 133 ~i~~~~~~~~~~~-~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~ 210 (740)
T 4a5s_A 133 DIYVKIEPNLPSY-RITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQY 210 (740)
T ss_dssp EEEEESSTTSCCE-ECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSS
T ss_pred eEEEEECCCCceE-EEcCCCCccceecCcccccccchhcCCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCC
Confidence 9999999876432 1100 00111111 1123588999 56666665422 1
Q ss_pred ------------------cEEEEECCC---Ccc--ccccc------ccCCCeeEEEecCCCCcEEEEEeC----CCcEEE
Q 015484 239 ------------------QLMIWDLRT---NQT--QQRVK------AHEKEVNYLSFNPYNEWVLATASS----DTTVAL 285 (406)
Q Consensus 239 ------------------~i~i~d~~~---~~~--~~~~~------~~~~~v~~i~~~~~~~~~l~~~~~----dg~i~v 285 (406)
.|++||+.+ ++. ...+. .+...+..++|+|+|+ +++.... +..|.+
T Consensus 211 ~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~-~~~~~~~r~~~~~~i~~ 289 (740)
T 4a5s_A 211 PKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQER-ISLQWLRRIQNYSVMDI 289 (740)
T ss_dssp CEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTE-EEEEEEESSTTEEEEEE
T ss_pred CcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCe-EEEEEeCCCCCEEEEEE
Confidence 588899988 631 22232 3677799999999998 5554432 237999
Q ss_pred EeCCCCC----CC-cEEe--cCCCCCeE-----EEEEcCCCCCEEEEEe-CCC--cEEEEeCCC
Q 015484 286 FDMRKMT----VP-LHIL--SSHTEEVF-----QVEWDPNHETVLASSA-DDR--RLMVWDLNR 334 (406)
Q Consensus 286 wd~~~~~----~~-~~~~--~~h~~~v~-----~i~~~p~~~~~l~s~~-~dg--~i~iwd~~~ 334 (406)
||+.++. +. +..+ ..|...|. ...|+|+|+.+++..+ .+| .|.+||+..
T Consensus 290 ~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~ 353 (740)
T 4a5s_A 290 CDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK 353 (740)
T ss_dssp EEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTC
T ss_pred EECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCC
Confidence 9998765 11 1222 44555544 7889999986542554 444 577777764
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.58 E-value=3e-13 Score=122.01 Aligned_cols=223 Identities=12% Similarity=0.141 Sum_probs=141.0
Q ss_pred CceeEEEEcCCCCcEEEEEeCC---C--eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC---
Q 015484 116 GEVNRARCMPQKPNLVGTKTSS---C--EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH--- 187 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~d---g--~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~--- 187 (406)
..+..++|+|+|. .||..+.+ + .|++|++..... ..+..+.. +.+++|+|+++ .|+.++.
T Consensus 59 ~~~~~~~~SpDg~-~la~~~~~~~~~~~~l~~~~~~~g~~---------~~l~~~~~-~~~~~wspdg~-~l~~~~~~~~ 126 (347)
T 2gop_A 59 ENATMPRISPDGK-KIAFMRANEEKKVSEIWVADLETLSS---------KKILEAKN-IRSLEWNEDSR-KLLIVGFKRR 126 (347)
T ss_dssp ESCEEEEECTTSS-EEEEEEEETTTTEEEEEEEETTTTEE---------EEEEEESE-EEEEEECTTSS-EEEEEEECCC
T ss_pred ccCCCeEECCCCC-EEEEEEeccCCCcceEEEEECCCCce---------EEEEcCCC-ccceeECCCCC-EEEEEEccCC
Confidence 5688999999995 56555543 3 477778765321 22222233 89999999998 7776653
Q ss_pred ------------------------CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC-----
Q 015484 188 ------------------------DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC----- 238 (406)
Q Consensus 188 ------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg----- 238 (406)
...|.+||+.++... . .+.. . .+..++|+|+ + +++++..++
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~---~---~l~~-~-~~~~~~~spd-g-~~~~~~~~~~~~~~ 196 (347)
T 2gop_A 127 EDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI---E---EFEK-P-RFSSGIWHRD-K-IVVNVPHREIIPQY 196 (347)
T ss_dssp C---------CCCC---------CEEEEEEEETTTTEEE---E---EEEE-E-TTCEEEEETT-E-EEEEEECCCSSCCS
T ss_pred CcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE---e---eecC-C-CcccccCCCC-e-EEEEEecccccccc
Confidence 257889998775321 1 1222 2 6788999994 5 776665442
Q ss_pred --cEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCC--------CcEEEEeCCCCCCCcEEecCCCCCeEE-
Q 015484 239 --QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD--------TTVALFDMRKMTVPLHILSSHTEEVFQ- 307 (406)
Q Consensus 239 --~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~~h~~~v~~- 307 (406)
...+|.+.+++ ...+..+ ..+..+ +|+|+ .|+.++.+ ..|.+|| + .........+...+..
T Consensus 197 ~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~-~l~~~~~~~~~~~~~~~~l~~~d--~-~~~~~l~~~~~~~~~~~ 268 (347)
T 2gop_A 197 FKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGE-RILLYGKPEKKYMSEHNKLYIYD--G-KEVMGILDEVDRGVGQA 268 (347)
T ss_dssp SCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSS-CEEEEECCSSSCCCSSCEEEEEC--S-SCEEESSTTCCSEEEEE
T ss_pred cccccEEEeCCCc-eEEeccC-cceeeE--CCCCC-EEEEEEccccCCccccceEEEEC--C-CceEeccccCCcccCCc
Confidence 33444444443 3334333 444444 89998 55555533 3688888 3 2323334455677886
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcE-EE
Q 015484 308 VEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTV-QV 386 (406)
Q Consensus 308 i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i-~i 386 (406)
+.|+ ++ ++++++.++.++|| +.. + .... ...+...|.+++|+| . ++++++.++.. .|
T Consensus 269 ~~~s-dg--~~~~~~~~~~~~l~-~~~-g-------------~~~~-~~~~~~~v~~~~~s~--~-~~~~~~~~~~~~~l 326 (347)
T 2gop_A 269 KIKD-GK--VYFTLFEEGSVNLY-IWD-G-------------EIKP-IAKGRHWIMGFDVDE--I-VVYLKETATRLREL 326 (347)
T ss_dssp EEET-TE--EEEEEEETTEEEEE-EES-S-------------SEEE-EECSSSEEEEEEESS--S-EEEEEECSSSCCEE
T ss_pred cEEc-Cc--EEEEEecCCcEEEE-EcC-C-------------ceEE-EecCCCeEEeeeeeC--c-EEEEEcCCCChHHh
Confidence 9999 76 78899999999999 863 2 1111 223466789999999 4 67777767665 78
Q ss_pred EeCC
Q 015484 387 WQMT 390 (406)
Q Consensus 387 w~~~ 390 (406)
|.+.
T Consensus 327 ~~~~ 330 (347)
T 2gop_A 327 FTWD 330 (347)
T ss_dssp EEES
T ss_pred eEeC
Confidence 8775
No 183
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.57 E-value=1.5e-12 Score=115.59 Aligned_cols=246 Identities=9% Similarity=0.051 Sum_probs=160.8
Q ss_pred cCCceeEEEEcCCCCcEEEE-------EeCCCeEEEEeCCCccccccCCCCCceeee-----CCCCCeeEEEecCC-CCC
Q 015484 114 VDGEVNRARCMPQKPNLVGT-------KTSSCEVYVFDCAKQAEKQQDDCDPDLRLK-----GHDKEGYGLSWSPF-KEG 180 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~-------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~l~~~~~-~~~ 180 (406)
.-....+++|.+++ .++++ +..++.|.+|+..+... ..+. ++...+.+++++++ +.
T Consensus 16 ~~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~i~~~d~~~g~~---------~~~~~~~~~~~~~~~~~i~~~~~~g~- 84 (314)
T 1pjx_A 16 DIPGAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKK---------TVICKPEVNGYGGIPAGCQCDRDANQ- 84 (314)
T ss_dssp CCTTCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCCE---------EEEECCEETTEECCEEEEEECSSSSE-
T ss_pred cCCCccCceECCCC-CEEEEEeccccCCCCCCEEEEEeCCCCcE---------EEEEecccCCCCCCCceEEEecCCCc-
Confidence 34567899999888 56666 56788999999766321 1122 24467889999998 54
Q ss_pred eEEEecCCCeEEEEeCCCccCCceeeeeeeee-ccCccEEEEEeeCCCCCEEEEEecC---------------CcEEEEE
Q 015484 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYE-AHESVVEDVSWHLKNENLFGSAGDD---------------CQLMIWD 244 (406)
Q Consensus 181 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~p~~~~~l~~~~~d---------------g~i~i~d 244 (406)
++++. ..+.|.+||.. +... .+. ..... .....+.++++++ +++++++...+ +.|..+|
T Consensus 85 l~v~~-~~~~l~~~d~~-g~~~-~~~-~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (314)
T 1pjx_A 85 LFVAD-MRLGLLVVQTD-GTFE-EIA-KKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFT 159 (314)
T ss_dssp EEEEE-TTTEEEEEETT-SCEE-ECC-SBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEEC
T ss_pred EEEEE-CCCCEEEEeCC-CCEE-EEE-eccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEEC
Confidence 44444 44578899987 4321 110 00000 1124578999998 56777766554 5677787
Q ss_pred CCCCcccccccccCCCeeEEEec----CCCCcEEEEEeCCCcEEEEeCC-CCCC----CcEEecCCC-CCeEEEEEcCCC
Q 015484 245 LRTNQTQQRVKAHEKEVNYLSFN----PYNEWVLATASSDTTVALFDMR-KMTV----PLHILSSHT-EEVFQVEWDPNH 314 (406)
Q Consensus 245 ~~~~~~~~~~~~~~~~v~~i~~~----~~~~~~l~~~~~dg~i~vwd~~-~~~~----~~~~~~~h~-~~v~~i~~~p~~ 314 (406)
.. ++.. .+.........++++ |+++.++++...++.|.+||+. .+.. ....+..+. ..+..+++++++
T Consensus 160 ~~-g~~~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G 237 (314)
T 1pjx_A 160 TD-GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN 237 (314)
T ss_dssp TT-SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC
T ss_pred CC-CCEE-EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCC
Confidence 65 4432 222233456889999 9987455555667899999976 2211 122333333 568899999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 315 ETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 315 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
. ++++...++.|.+||..+.. .+.....+...+.+++|+|++..++++...++.|..|++...
T Consensus 238 ~-l~v~~~~~~~i~~~d~~~g~--------------~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 238 N-LLVANWGSSHIEVFGPDGGQ--------------PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp C-EEEEEETTTEEEEECTTCBS--------------CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred C-EEEEEcCCCEEEEEcCCCCc--------------EeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 6 67777778999999986411 112223345679999999999866666666789999998753
No 184
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.57 E-value=1e-12 Score=119.28 Aligned_cols=219 Identities=11% Similarity=0.061 Sum_probs=134.5
Q ss_pred EEEEcCCCCcEEEEEe----------CCCeEEEEeCCCccccccCCCCCceeeeC------CCCCeeEEEecCCCCCeEE
Q 015484 120 RARCMPQKPNLVGTKT----------SSCEVYVFDCAKQAEKQQDDCDPDLRLKG------HDKEGYGLSWSPFKEGYLV 183 (406)
Q Consensus 120 ~i~~~p~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~------h~~~v~~l~~~~~~~~~l~ 183 (406)
.++|+|+++ ++.++. .++.|.+||..+. +....+.. +......++++|+|+ +|+
T Consensus 54 ~i~~spdg~-~lyv~~~~~~~~~~g~~~~~v~v~d~~t~--------~~~~~i~~~~~~~~~g~~p~~i~~spdg~-~l~ 123 (361)
T 2oiz_A 54 HVQVSNDGK-KIYTMTTYHERITRGKRSDVVEVWDADKL--------TFEKEISLPPKRVQGLNYDGLFRQTTDGK-FIV 123 (361)
T ss_dssp EEEECTTSS-EEEEEEEEETTSSSSCEEEEEEEEETTTC--------CEEEEEEECTTBCCBCCCGGGEEECTTSS-EEE
T ss_pred ceEECCCCC-EEEEEEecccccccCCCCCEEEEEECcCC--------cEEEEEEcCccccccCCCcceEEECCCCC-EEE
Confidence 899999995 455544 3667999998763 22333332 234567899999998 887
Q ss_pred EecC--CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC------------------------
Q 015484 184 SGSH--DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD------------------------ 237 (406)
Q Consensus 184 s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d------------------------ 237 (406)
++.. +++|.+||+.+++....+ +. .. ....+.+.|.+...+++.+.|
T Consensus 124 v~n~~~~~~v~v~d~~~~~~~~~~-----i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~ 196 (361)
T 2oiz_A 124 LQNASPATSIGIVDVAKGDYVEDV-----TA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMF 196 (361)
T ss_dssp EEEESSSEEEEEEETTTTEEEEEE-----GG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCS
T ss_pred EECCCCCCeEEEEECCCCcEEEEE-----ec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceE
Confidence 7753 689999999886432220 11 00 111122333222333333444
Q ss_pred ------------------------CcEEEEECCCCccc--ccccc------c----CCCeeEEEecCCCCcEEEEEe---
Q 015484 238 ------------------------CQLMIWDLRTNQTQ--QRVKA------H----EKEVNYLSFNPYNEWVLATAS--- 278 (406)
Q Consensus 238 ------------------------g~i~i~d~~~~~~~--~~~~~------~----~~~v~~i~~~~~~~~~l~~~~--- 278 (406)
+.+.++|+...... ..+.. . ......++++|++..++++..
T Consensus 197 ~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~ 276 (361)
T 2oiz_A 197 SVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDG 276 (361)
T ss_dssp CTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSC
T ss_pred cCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCC
Confidence 44444444322210 00000 0 011112688998884555443
Q ss_pred -------CCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCee
Q 015484 279 -------SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPEL 351 (406)
Q Consensus 279 -------~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 351 (406)
..+.|.+||+.+.+. +..+..+. +.+++|+|+++ +|++++. +.|.+||..+.. .+.
T Consensus 277 ~~~~~~~~~~~v~viD~~t~~~-v~~i~~~~--p~~ia~spdg~-~l~v~n~-~~v~v~D~~t~~------------l~~ 339 (361)
T 2oiz_A 277 KEGTHKFPAAEIWVMDTKTKQR-VARIPGRD--ALSMTIDQQRN-LMLTLDG-GNVNVYDISQPE------------PKL 339 (361)
T ss_dssp CTTCTTCCCSEEEEEETTTTEE-EEEEECTT--CCEEEEETTTT-EEEEECS-SCEEEEECSSSS------------CEE
T ss_pred CcccccCCCceEEEEECCCCcE-EEEEecCC--eeEEEECCCCC-EEEEeCC-CeEEEEECCCCc------------cee
Confidence 134799999998664 77777766 99999999998 5667766 999999998721 155
Q ss_pred EEEecCCCCCeeeEEeCCCCC
Q 015484 352 LFSHGGHKAKISDFSWNKNDP 372 (406)
Q Consensus 352 ~~~~~~h~~~v~~~~~s~~~~ 372 (406)
+..+..+......++++|+|.
T Consensus 340 ~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 340 LRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEETTSCSSEEEEEECCCSC
T ss_pred eEEeccCCCCcEEEEecCCCC
Confidence 556555666788999999986
No 185
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.56 E-value=1.3e-12 Score=117.23 Aligned_cols=207 Identities=13% Similarity=0.104 Sum_probs=147.2
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceee---------eCCCCCeeEEEecC-CCCCeEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRL---------KGHDKEGYGLSWSP-FKEGYLV 183 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~---------~~h~~~v~~l~~~~-~~~~~l~ 183 (406)
+-..+..+++.|++ .++++...++.|++|+.... ......+ .++-....+|+++| ++. +++
T Consensus 89 ~~~~p~gia~d~~g-~l~v~d~~~~~v~~~~~~g~-------~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~-lyv 159 (329)
T 3fvz_A 89 LFYLPHGLSIDTDG-NYWVTDVALHQVFKLDPHSK-------EGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA-VFV 159 (329)
T ss_dssp TCSSEEEEEECTTS-CEEEEETTTTEEEEECTTCS-------SCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC-EEE
T ss_pred ccCCceEEEECCCC-CEEEEECCCCEEEEEeCCCC-------eEEEEEecccCCCCCCccccCCCcEEEEeCCCCe-EEE
Confidence 34578999999999 58888888999999998652 1123333 23445688999999 565 777
Q ss_pred Eec-CCCeEEEEeCCCccCCceeeeeeee----eccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc--cc
Q 015484 184 SGS-HDNKICLWDVSALAQDKVIDAMHVY----EAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV--KA 256 (406)
Q Consensus 184 s~~-~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~ 256 (406)
+.+ .++.|++|+.. +.....+.....- ..+-.....++++|+++.++++...++.|++||..+++.+..+ ..
T Consensus 160 ~d~~~~~~I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~ 238 (329)
T 3fvz_A 160 SDGYCNSRIVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHAS 238 (329)
T ss_dssp EECSSCCEEEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTT
T ss_pred EeCCCCCeEEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccc
Confidence 776 68999999943 3211111000000 0112347899999955888888889999999999988877666 34
Q ss_pred cCCCeeEEEecCCCCcEEEEE-------eCCCcEEEEeCCCCCCCcEEe---cCCCCCeEEEEEcCCCCCEEEEEeCCCc
Q 015484 257 HEKEVNYLSFNPYNEWVLATA-------SSDTTVALFDMRKMTVPLHIL---SSHTEEVFQVEWDPNHETVLASSADDRR 326 (406)
Q Consensus 257 ~~~~v~~i~~~~~~~~~l~~~-------~~dg~i~vwd~~~~~~~~~~~---~~h~~~v~~i~~~p~~~~~l~s~~~dg~ 326 (406)
+...+..++++| +- ++++. ..+..|++||+.+++. +..+ ..+...+..|+++|+| .++++...++.
T Consensus 239 ~~~~~~~~~~~p-g~-~~~~~g~~~v~~~~~~~v~~~~~~~g~~-~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~~~ 314 (329)
T 3fvz_A 239 FGRNVFAISYIP-GF-LFAVNGKPYFGDQEPVQGFVMNFSSGEI-IDVFKPVRKHFDMPHDIVASEDG-TVYIGDAHTNT 314 (329)
T ss_dssp TTTCEEEEEEET-TE-EEEEECCCCTTCSCCCCEEEEETTTCCE-EEEECCSSSCCSSEEEEEECTTS-EEEEEESSSCC
T ss_pred cCCCcceeeecC-CE-EEEeCCCEEeccCCCcEEEEEEcCCCeE-EEEEcCCCCccCCeeEEEECCCC-CEEEEECCCCE
Confidence 556788999999 32 33333 2345899999988654 5555 3566789999999999 58889999999
Q ss_pred EEEEeCCC
Q 015484 327 LMVWDLNR 334 (406)
Q Consensus 327 i~iwd~~~ 334 (406)
|++|++..
T Consensus 315 I~~~~~~~ 322 (329)
T 3fvz_A 315 VWKFTLTE 322 (329)
T ss_dssp EEEEEEEE
T ss_pred EEEEeCCc
Confidence 99999864
No 186
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.56 E-value=1.5e-11 Score=108.19 Aligned_cols=242 Identities=6% Similarity=-0.011 Sum_probs=162.2
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
+...+..+++.+++ .+.++...++.|..|+...... ...+......+.++++.+++. ++++...++.|.+
T Consensus 55 ~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~~~--------~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~ 124 (299)
T 2z2n_A 55 PDAKVMCLTISSDG-EVWFTENAANKIGRITKKGIIK--------EYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGR 124 (299)
T ss_dssp TTCCEEEEEECTTS-CEEEEETTTTEEEEECTTSCEE--------EEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEE
T ss_pred ccCceeeEEECCCC-CEEEeCCCCCeEEEECCCCcEE--------EEeCCCcCCCceeeEECCCCC-EEEEecCCceEEE
Confidence 45779999999988 5666666688899998763110 111223455788999999887 7777777889999
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccc-ccccCCCeeEEEecCCCCc
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQR-VKAHEKEVNYLSFNPYNEW 272 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~i~~~~~~~~ 272 (406)
||. ++... . .........+..+++.+ ++.++++...++.|..||. +++.... .......+..+++++++.
T Consensus 125 ~d~-~g~~~----~-~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~- 195 (299)
T 2z2n_A 125 ITD-DGKIR----E-YELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDA- 195 (299)
T ss_dssp ECT-TCCEE----E-EECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-
T ss_pred ECC-CCCEE----E-ecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCC-
Confidence 998 43211 1 11122345688999998 5677777777789999998 5554322 223345688999999988
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeE
Q 015484 273 VLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELL 352 (406)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (406)
++++...++.|.+||. +..........+...+.++++++++. +.++...++.|.+||... . ...
T Consensus 196 l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~~g--~------------~~~ 259 (299)
T 2z2n_A 196 LWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGID-LWFTEWGANKIGRLTSNN--I------------IEE 259 (299)
T ss_dssp EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEEETTT--E------------EEE
T ss_pred EEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCC-EEEeccCCceEEEECCCC--c------------eEE
Confidence 6666666789999998 54421112333456799999999986 666666788999999832 1 111
Q ss_pred EEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 353 FSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 353 ~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
.....+...+.++++ +++. ++++.. .+.|..+++.++.
T Consensus 260 ~~~~~~~~~~~~i~~-~~g~-l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 260 YPIQIKSAEPHGICF-DGET-IWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EECSSSSCCEEEEEE-CSSC-EEEEET-TTEEEEEEEC---
T ss_pred EeCCCCCCccceEEe-cCCC-EEEEec-CCcEEEEEcCccc
Confidence 122334567899999 8887 566554 5677778877654
No 187
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.56 E-value=5.5e-13 Score=120.31 Aligned_cols=222 Identities=9% Similarity=0.129 Sum_probs=139.3
Q ss_pred CceeEEEEcCCCCcEEEEE--------eCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC
Q 015484 116 GEVNRARCMPQKPNLVGTK--------TSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~--------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
..+...++ +|..++.+. ..++.|++|++.... ...+ ..+..++|+|+|+ .|+.++.
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~---------~~~l----~~~~~~~~SpDg~-~la~~~~ 78 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNA---------RRFI----ENATMPRISPDGK-KIAFMRA 78 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCC---------EEEE----ESCEEEEECTTSS-EEEEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCc---------eEEc----ccCCCeEECCCCC-EEEEEEe
Confidence 34566666 664433332 125679999988732 1223 4678899999998 7777664
Q ss_pred C---C--eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec--------------------------
Q 015484 188 D---N--KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD-------------------------- 236 (406)
Q Consensus 188 d---g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-------------------------- 236 (406)
+ + .|.+|++.+++.. . +..+.. +..++|+| +++.|+.++.
T Consensus 79 ~~~~~~~~l~~~~~~~g~~~------~-l~~~~~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 149 (347)
T 2gop_A 79 NEEKKVSEIWVADLETLSSK------K-ILEAKN-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDG 149 (347)
T ss_dssp ETTTTEEEEEEEETTTTEEE------E-EEEESE-EEEEEECT-TSSEEEEEEECCCC---------CCCC---------
T ss_pred ccCCCcceEEEEECCCCceE------E-EEcCCC-ccceeECC-CCCEEEEEEccCCCcCCcEEEcccceeecCcccccC
Confidence 3 3 3777787764321 1 122233 89999999 5565555543
Q ss_pred -CCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCC-------cEEEEeCCCCCCCcEEecCCCCCeEEE
Q 015484 237 -DCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT-------TVALFDMRKMTVPLHILSSHTEEVFQV 308 (406)
Q Consensus 237 -dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg-------~i~vwd~~~~~~~~~~~~~h~~~v~~i 308 (406)
...|.+||+.+++.+..+.. . .+..++|+|++ +++++..++ ...+|.+.+ .. ...+..+ ..+..+
T Consensus 150 ~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~-~~-~~~l~~~-~~~~~~ 222 (347)
T 2gop_A 150 EKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWED-GK-EEKMFEK-VSFYAV 222 (347)
T ss_dssp CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEET-TE-EEEEEEE-ESEEEE
T ss_pred ccceEEEEECCCCeEEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCC-Cc-eEEeccC-cceeeE
Confidence 25799999988876344544 3 78899999998 666665442 334444433 22 3444444 555554
Q ss_pred EEcCCCCCEEEEEeCC--------CcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeee-EEeCCCCCcEEEEEe
Q 015484 309 EWDPNHETVLASSADD--------RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISD-FSWNKNDPWVISSVA 379 (406)
Q Consensus 309 ~~~p~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~s~~~~~~l~s~~ 379 (406)
+|+|+. |+.++.+ ..|.+|| .. .......++...+.. +.|+ ++ ++++++
T Consensus 223 --spdg~~-l~~~~~~~~~~~~~~~~l~~~d-~~---------------~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~ 280 (347)
T 2gop_A 223 --DSDGER-ILLYGKPEKKYMSEHNKLYIYD-GK---------------EVMGILDEVDRGVGQAKIKD-GK--VYFTLF 280 (347)
T ss_dssp --EECSSC-EEEEECCSSSCCCSSCEEEEEC-SS---------------CEEESSTTCCSEEEEEEEET-TE--EEEEEE
T ss_pred --CCCCCE-EEEEEccccCCccccceEEEEC-CC---------------ceEeccccCCcccCCccEEc-Cc--EEEEEe
Confidence 999986 5444433 4677887 21 112222345566776 8999 76 788889
Q ss_pred CCCcEEEEeCCCc
Q 015484 380 DDNTVQVWQMTDS 392 (406)
Q Consensus 380 ~dg~i~iw~~~~~ 392 (406)
.++.++|| +.++
T Consensus 281 ~~~~~~l~-~~~g 292 (347)
T 2gop_A 281 EEGSVNLY-IWDG 292 (347)
T ss_dssp ETTEEEEE-EESS
T ss_pred cCCcEEEE-EcCC
Confidence 99999999 8744
No 188
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.54 E-value=3.5e-13 Score=121.74 Aligned_cols=179 Identities=14% Similarity=0.068 Sum_probs=130.2
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccc---cCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQ---QDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
.++.+++++.. .++++|+.++ +.+|++....... .....+.... .+.. |+.++| ++. .|+++ .++.|++
T Consensus 39 ~~nlLais~~~-gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~-~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSK-SLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGD-QVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEETTT-TEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETT-EEEEE-ESSEEEE
T ss_pred cccEEEEcCCC-CEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCC-EEEEE-cCCcEEE
Confidence 69999999988 5788888875 6779987643100 0112333333 3566 999999 676 88888 8899999
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcE
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWV 273 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 273 (406)
||+.+.... .....+...+.++.+.+ ++ +++++.||.|.+||+..+.... +...|++++|+|+|
T Consensus 111 ~dv~sl~~~------~~~~~~~~~v~~i~~~~--p~-~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--- 174 (388)
T 1xip_A 111 LDLEELSEF------RTVTSFEKPVFQLKNVN--NT-LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--- 174 (388)
T ss_dssp EESSSTTCE------EEEEECSSCEEEEEECS--SE-EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE---
T ss_pred EEchhhhcc------CccceeecceeeEEecC--CC-EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc---
Confidence 999876532 22345667788888775 23 7888999999999999776542 45689999999998
Q ss_pred EEEEeCCCcEEEEeCCCCCCC-cEEe------c---CCCCCeEEEEEcCCCCCEEEE
Q 015484 274 LATASSDTTVALFDMRKMTVP-LHIL------S---SHTEEVFQVEWDPNHETVLAS 320 (406)
Q Consensus 274 l~~~~~dg~i~vwd~~~~~~~-~~~~------~---~h~~~v~~i~~~p~~~~~l~s 320 (406)
++.|..||.+++|+....... ...+ . +|...|.+|.|.+++. ++++
T Consensus 175 ~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~-flv~ 230 (388)
T 1xip_A 175 LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQD-FLAV 230 (388)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSE-EEEE
T ss_pred eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCe-EEEE
Confidence 577889999999988764421 2233 2 4778999999999886 4554
No 189
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.53 E-value=1.3e-12 Score=117.03 Aligned_cols=244 Identities=10% Similarity=0.029 Sum_probs=160.8
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
.....+.+.. + .++++...++.|.+||..+. +....+. .......+++++++. .+++...++.|.+||
T Consensus 44 ~~~~~i~~~~-~-~lyv~~~~~~~v~viD~~t~--------~~~~~i~-~~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD 111 (328)
T 3dsm_A 44 DVAQSMVIRD-G-IGWIVVNNSHVIFAIDINTF--------KEVGRIT-GFTSPRYIHFLSDEK-AYVTQIWDYRIFIIN 111 (328)
T ss_dssp SCEEEEEEET-T-EEEEEEGGGTEEEEEETTTC--------CEEEEEE-CCSSEEEEEEEETTE-EEEEEBSCSEEEEEE
T ss_pred ccceEEEEEC-C-EEEEEEcCCCEEEEEECccc--------EEEEEcC-CCCCCcEEEEeCCCe-EEEEECCCCeEEEEE
Confidence 3456777743 3 56777777899999999873 2234443 345678999988774 555555889999999
Q ss_pred CCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe-cCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEE
Q 015484 196 VSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG-DDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVL 274 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 274 (406)
+.+++....+.. ....+.......+++. ++.++++.. .++.|.++|+.+++.+..+.. ......+.++|+++ ++
T Consensus 112 ~~t~~~~~~i~~-g~~~~~~~~p~~i~~~--~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~-l~ 186 (328)
T 3dsm_A 112 PKTYEITGYIEC-PDMDMESGSTEQMVQY--GKYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNK-MW 186 (328)
T ss_dssp TTTTEEEEEEEC-TTCCTTTCBCCCEEEE--TTEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSE-EE
T ss_pred CCCCeEEEEEEc-CCccccCCCcceEEEE--CCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCC-EE
Confidence 987643221110 0000011145567773 566666654 488999999999887776653 33457889999998 66
Q ss_pred EEEeCC----------CcEEEEeCCCCCCCcEEecCC-CCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccccc
Q 015484 275 ATASSD----------TTVALFDMRKMTVPLHILSSH-TEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELD 343 (406)
Q Consensus 275 ~~~~~d----------g~i~vwd~~~~~~~~~~~~~h-~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 343 (406)
+++..+ +.|.++|..+.+. ...+... ......++|+|+++. |..+.. .|.+||..+......
T Consensus 187 v~~~~~~~~~~~~~~~~~v~~id~~t~~v-~~~~~~~~g~~p~~la~~~d~~~-lyv~~~--~v~~~d~~t~~~~~~--- 259 (328)
T 3dsm_A 187 TITDGGYEGSPYGYEAPSLYRIDAETFTV-EKQFKFKLGDWPSEVQLNGTRDT-LYWINN--DIWRMPVEADRVPVR--- 259 (328)
T ss_dssp EEBCCBCTTCSSCBCCCEEEEEETTTTEE-EEEEECCTTCCCEEEEECTTSCE-EEEESS--SEEEEETTCSSCCSS---
T ss_pred EEECCCccCCccccCCceEEEEECCCCeE-EEEEecCCCCCceeEEEecCCCE-EEEEcc--EEEEEECCCCceeee---
Confidence 665544 7899999987553 3344322 246899999999875 555543 899999876321100
Q ss_pred ccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEE----eCCCcEEEEeCCCc
Q 015484 344 AEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSV----ADDNTVQVWQMTDS 392 (406)
Q Consensus 344 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~----~~dg~i~iw~~~~~ 392 (406)
.. ...+......++++|++..++++. ..++.|.+|++...
T Consensus 260 ------~~---~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~ 303 (328)
T 3dsm_A 260 ------PF---LEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGK 303 (328)
T ss_dssp ------CS---BCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCC
T ss_pred ------ee---ecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCC
Confidence 00 011135688999999655577777 67899999999833
No 190
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.53 E-value=9.2e-12 Score=109.84 Aligned_cols=233 Identities=12% Similarity=0.065 Sum_probs=152.8
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
.-.-+..|+|++..++++...++.|+.|+..... ...+ .....+.++++++++. ++++. ++.|.+||
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~---------~~~~-~~~~~~~~i~~~~dG~-l~v~~--~~~l~~~d 79 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ---------VQRV-TMDAPVSSVALRQSGG-YVATI--GTKFCALN 79 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC---------EEEE-ECSSCEEEEEEBTTSS-EEEEE--TTEEEEEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCc---------EEEE-eCCCceEEEEECCCCC-EEEEE--CCeEEEEE
Confidence 3456789999776788888889999999988631 1122 2456789999999887 55554 56899999
Q ss_pred CCCccCCceeeeeeeeec--cCccEEEEEeeCCCCCEEEEEecC---------CcEEEEECCCCcccccccccCCCeeEE
Q 015484 196 VSALAQDKVIDAMHVYEA--HESVVEDVSWHLKNENLFGSAGDD---------CQLMIWDLRTNQTQQRVKAHEKEVNYL 264 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~p~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~v~~i 264 (406)
..++.. ..+..... ....+++++++| +++++++.... ..-.+|.+........+.......+.+
T Consensus 80 ~~~g~~----~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi 154 (297)
T 3g4e_A 80 WKEQSA----VVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGL 154 (297)
T ss_dssp TTTTEE----EEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEE
T ss_pred CCCCcE----EEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccce
Confidence 876532 11111111 124588999998 56666654321 223444443222222233334456889
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCC--CCCC----CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcc
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMR--KMTV----PLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE 338 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~----~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 338 (406)
+|+|+++.++++.+.++.|.+||+. ++.. .+..+..+...+..++++++|. +.++....+.|.+||..+
T Consensus 155 ~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~t---- 229 (297)
T 3g4e_A 155 DWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVT---- 229 (297)
T ss_dssp EECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTT----
T ss_pred EEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCC----
Confidence 9999998566677778899999974 3221 1122223345688999999995 677777788899999874
Q ss_pred cccccccCCCCeeEEEecCCCCCeeeEEeC-CCCCcEEEEEeCC
Q 015484 339 QLELDAEDGPPELLFSHGGHKAKISDFSWN-KNDPWVISSVADD 381 (406)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~~~l~s~~~d 381 (406)
.+++..+..+...+++++|. |+++.++++...+
T Consensus 230 ----------G~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 230 ----------GKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp ----------CCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred ----------ceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence 24455555566679999998 8887666666543
No 191
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.52 E-value=6e-12 Score=109.59 Aligned_cols=210 Identities=8% Similarity=0.003 Sum_probs=147.7
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCC-CCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeee
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHD-KEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDA 207 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 207 (406)
++|++++.++.|++||..+++ .+..+..+. ..+.+++++|+|+ +|++ .++.|..||. +++..
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG~--------~~w~~~~~~~~~~~~~~~~pdG~-ilvs--~~~~V~~~d~-~G~~~----- 68 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTKE--------IVWEYPLEKGWECNSVAATKAGE-ILFS--YSKGAKMITR-DGREL----- 68 (276)
T ss_dssp EEEEECTTCSEEEEEETTTTE--------EEEEEECCTTCCCCEEEECTTSC-EEEE--CBSEEEEECT-TSCEE-----
T ss_pred cEEEeeCCCCEEEEEECCCCe--------EEEEeCCCccCCCcCeEECCCCC-EEEe--CCCCEEEECC-CCCEE-----
Confidence 589999999999999997743 255666655 4788999999987 7773 4678999998 55432
Q ss_pred eeeeecc-CccEEEEEeeCCCCCEEEEEec-CCcEEEEECCCCccccccc------ccCCCeeEEEecCCCCcEEEEEeC
Q 015484 208 MHVYEAH-ESVVEDVSWHLKNENLFGSAGD-DCQLMIWDLRTNQTQQRVK------AHEKEVNYLSFNPYNEWVLATASS 279 (406)
Q Consensus 208 ~~~~~~~-~~~i~~i~~~p~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~------~~~~~v~~i~~~~~~~~~l~~~~~ 279 (406)
..+..+ ...+.++.+.| +++++++.+. ++.|..+|. +++.+..+. .+......++..+++. ++++...
T Consensus 69 -W~~~~~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~~ 144 (276)
T 3no2_A 69 -WNIAAPAGCEMQTARILP-DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPLFA 144 (276)
T ss_dssp -EEEECCTTCEEEEEEECT-TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEETT
T ss_pred -EEEcCCCCccccccEECC-CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCC-EEEEecC
Confidence 233332 34688888998 6777777776 778888885 566655542 1222455667889998 8888889
Q ss_pred CCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCC-
Q 015484 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH- 358 (406)
Q Consensus 280 dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h- 358 (406)
++.|..||.. ++. +..+..+ ..+.++...+++. ++++++.++.|..+|..+. +.+..+..+
T Consensus 145 ~~~v~~~d~~-G~~-~w~~~~~-~~~~~~~~~~~g~-~~v~~~~~~~v~~~d~~tG--------------~~~w~~~~~~ 206 (276)
T 3no2_A 145 TSEVREIAPN-GQL-LNSVKLS-GTPFSSAFLDNGD-CLVACGDAHCFVQLNLESN--------------RIVRRVNAND 206 (276)
T ss_dssp TTEEEEECTT-SCE-EEEEECS-SCCCEEEECTTSC-EEEECBTTSEEEEECTTTC--------------CEEEEEEGGG
T ss_pred CCEEEEECCC-CCE-EEEEECC-CCccceeEcCCCC-EEEEeCCCCeEEEEeCcCC--------------cEEEEecCCC
Confidence 9999999987 554 5555543 4566778889886 6888888889999998762 233333211
Q ss_pred -----CCCeeeEEeCCCCCcEEEEE
Q 015484 359 -----KAKISDFSWNKNDPWVISSV 378 (406)
Q Consensus 359 -----~~~v~~~~~s~~~~~~l~s~ 378 (406)
...+..+...++|. ++++.
T Consensus 207 ~~~~~l~~~~~~~~~~~G~-i~v~~ 230 (276)
T 3no2_A 207 IEGVQLFFVAQLFPLQNGG-LYICN 230 (276)
T ss_dssp SBSCCCSEEEEEEECTTSC-EEEEE
T ss_pred CCCccccccccceEcCCCC-EEEEe
Confidence 12367777888887 55554
No 192
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.52 E-value=1.7e-11 Score=113.10 Aligned_cols=247 Identities=8% Similarity=0.011 Sum_probs=159.5
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC--eEEE
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN--KICL 193 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~i 193 (406)
.....|+|.|++ .++++...++.|++||...... ..+........ ++|++++. .|+++..++ .|.+
T Consensus 131 ~~P~~la~d~~g-~lyv~d~~~~~I~~id~~~g~~---------~~~~~~~~~~~-ia~~~~g~-~l~~~d~~~~~~I~~ 198 (409)
T 3hrp_A 131 KYMWGIAAVGNN-TVLAYQRDDPRVRLISVDDNKV---------TTVHPGFKGGK-PAVTKDKQ-RVYSIGWEGTHTVYV 198 (409)
T ss_dssp CCEEEEEECSTT-EEEEEETTTTEEEEEETTTTEE---------EEEEETCCBCB-CEECTTSS-EEEEEBSSTTCEEEE
T ss_pred CCceEEEEeCCC-CEEEEecCCCcEEEEECCCCEE---------EEeeccCCCCc-eeEecCCC-cEEEEecCCCceEEE
Confidence 367899999988 5777777789999999986322 22222233334 99999988 888887766 7888
Q ss_pred EeCCCccCCceeeeeeeeec-cCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccc----ccccCCCe--eEEEe
Q 015484 194 WDVSALAQDKVIDAMHVYEA-HESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQR----VKAHEKEV--NYLSF 266 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~v--~~i~~ 266 (406)
++......... +..... ....+.+++++|.++.+++ +..++.|+.||..++..... ..+....- ..++|
T Consensus 199 ~d~~~~~~~~~---~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~ 274 (409)
T 3hrp_A 199 YMKASGWAPTR---IGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIY 274 (409)
T ss_dssp EEGGGTTCEEE---EEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEE
T ss_pred EEcCCCceeEE---eeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEE
Confidence 88765432111 111112 3456788999985556555 66788999999987653221 11122222 38999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCC---------------CCeEEEEEcCCCCCEEEEEe-CCCcEEEE
Q 015484 267 NPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHT---------------EEVFQVEWDPNHETVLASSA-DDRRLMVW 330 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~---------------~~v~~i~~~p~~~~~l~s~~-~dg~i~iw 330 (406)
+|++..++++...++.|+.|+.... +..+.++. .....++++|++. ++++-. .+++|+.|
T Consensus 275 ~p~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~ 350 (409)
T 3hrp_A 275 YFVDSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKL 350 (409)
T ss_dssp ETTTTEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEE
T ss_pred eCCCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEE
Confidence 9965547777777889999987642 33333322 3578999999997 777877 88999999
Q ss_pred eCCCCCcccccccc------cCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 331 DLNRIGDEQLELDA------EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 331 d~~~~~~~~~~~~~------~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
++.... ....... .++.. ....-.....+++++++. ++++-..++.|+.+.+
T Consensus 351 ~~~~G~-v~~~~g~~~~~g~~~g~~-----~~~~~~~P~giavd~~g~-lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 351 DILDGY-VSTVAGQVDVASQIDGTP-----LEATFNYPYDICYDGEGG-YWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ETTTTE-EEEEEECTTCBSCCCBST-----TTCCBSSEEEEEECSSSE-EEEEESTTCEEEEEEE
T ss_pred ECCCCE-EEEEeCCCCCCCcCCCCh-----hceEeCCceEEEEcCCCC-EEEEECCCCeEEEEEe
Confidence 975421 1000000 00000 000124588999999976 7888788888888765
No 193
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.50 E-value=2.3e-11 Score=116.27 Aligned_cols=231 Identities=13% Similarity=0.064 Sum_probs=159.3
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCC--CccCCceee
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVS--ALAQDKVID 206 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~ 206 (406)
.++++...++.|.++|..+. +.+..+.. ...+..+.|+|+++ ++++++.|+.|.+||+. +.+.
T Consensus 168 ~~~V~~~~~~~V~viD~~t~--------~v~~~i~~-g~~p~~v~~SpDGr-~lyv~~~dg~V~viD~~~~t~~~----- 232 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTY--------EIKTVLDT-GYAVHISRLSASGR-YLFVIGRDGKVNMIDLWMKEPTT----- 232 (567)
T ss_dssp EEEEEETTTTEEEEEETTTC--------CEEEEEEC-SSCEEEEEECTTSC-EEEEEETTSEEEEEETTSSSCCE-----
T ss_pred eEEEEeCCCCeEEEEECCCC--------eEEEEEeC-CCCccceEECCCCC-EEEEEcCCCeEEEEECCCCCCcE-----
Confidence 56777788999999999873 22444443 33567999999999 88889999999999995 4321
Q ss_pred eeeeeeccCccEEEEEee----CCCCCEEEEEecCCcEEEEECCCCccccccccc-----------CCCeeEEEecCCCC
Q 015484 207 AMHVYEAHESVVEDVSWH----LKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAH-----------EKEVNYLSFNPYNE 271 (406)
Q Consensus 207 ~~~~~~~~~~~i~~i~~~----p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------~~~v~~i~~~~~~~ 271 (406)
+..+.. ......++|+ |++..++++...++.+.++|..+.+.+..+... ...+..+..++++.
T Consensus 233 -v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~ 310 (567)
T 1qks_A 233 -VAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP 310 (567)
T ss_dssp -EEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS
T ss_pred -eEEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCC
Confidence 223332 3346789999 554455555567799999999998887665321 22577888898887
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCee
Q 015484 272 WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPEL 351 (406)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 351 (406)
.+++....+|.|.++|....................+.|+|+++++++++..++.|.++|+.+. ++
T Consensus 311 ~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~--------------kl 376 (567)
T 1qks_A 311 EFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG--------------KL 376 (567)
T ss_dssp EEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT--------------EE
T ss_pred EEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC--------------cE
Confidence 6677777789999999986542221122234567789999999987777778899999999862 22
Q ss_pred EEEec-----CCCCCeeeEE-eCCCCCcEEEEEe-CCCcEEEEeCCCc
Q 015484 352 LFSHG-----GHKAKISDFS-WNKNDPWVISSVA-DDNTVQVWQMTDS 392 (406)
Q Consensus 352 ~~~~~-----~h~~~v~~~~-~s~~~~~~l~s~~-~dg~i~iw~~~~~ 392 (406)
+.... .|.+ ..+. ++|++..+++++. .++.|.+++..++
T Consensus 377 ~~~i~vgg~~Phpg--~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~ 422 (567)
T 1qks_A 377 VAIEDTGGQTPHPG--RGANFVHPTFGPVWATSHMGDDSVALIGTDPE 422 (567)
T ss_dssp EEEEECSSSSBCCT--TCEEEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred EEEEeccCcCCCCc--cceeeECCCCCcEEEeCCCCCCeEEEecCCCC
Confidence 22221 1322 1222 5787543566653 4689999998873
No 194
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.50 E-value=1.7e-12 Score=128.84 Aligned_cols=204 Identities=12% Similarity=0.054 Sum_probs=133.5
Q ss_pred CCCCeeEEEecCCCCCeEEEecCCC-----eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCc
Q 015484 165 HDKEGYGLSWSPFKEGYLVSGSHDN-----KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQ 239 (406)
Q Consensus 165 h~~~v~~l~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~ 239 (406)
|...+.+++|||+|+ +|+.++.++ .|++||+.+++... .... ...+..++|+| +++.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~-~la~~~~~~G~~~~~i~v~d~~tg~~~~-----~~~~--~~~~~~~~wsp-Dg~~l~~~~~~~~ 193 (710)
T 2xdw_A 123 GTVALRGYAFSEDGE-YFAYGLSASGSDWVTIKFMKVDGAKELP-----DVLE--RVKFSCMAWTH-DGKGMFYNAYPQQ 193 (710)
T ss_dssp SCEEEEEEEECTTSS-EEEEEEEETTCSCEEEEEEETTTTEEEE-----EEEE--EECSCCEEECT-TSSEEEEEECCCC
T ss_pred CCEEEEEEEECCCCC-EEEEEEcCCCCceEEEEEEECCCCCCCc-----cccc--CcccceEEEEe-CCCEEEEEEECCc
Confidence 444688999999999 777655433 89999998864321 0111 12366799999 5666666666655
Q ss_pred ----------------EEEEECCCCccc--ccc--cccCCCeeEEEecCCCCcEEEEEeC-----CCcEEEEeCCC----
Q 015484 240 ----------------LMIWDLRTNQTQ--QRV--KAHEKEVNYLSFNPYNEWVLATASS-----DTTVALFDMRK---- 290 (406)
Q Consensus 240 ----------------i~i~d~~~~~~~--~~~--~~~~~~v~~i~~~~~~~~~l~~~~~-----dg~i~vwd~~~---- 290 (406)
|++|++.++... ..+ ..+...+..+.|+|+|+ +|+.++. +..|++||+.+
T Consensus 194 ~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~~l~~~d~~~~~~~ 272 (710)
T 2xdw_A 194 DGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR-YVLLSIREGCDPVNRLWYCDLQQESNG 272 (710)
T ss_dssp SSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC-EEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred cccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCC-EEEEEEEccCCCccEEEEEECcccccc
Confidence 999999887632 111 22345578999999999 5555443 56899999976
Q ss_pred --CCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCC---CcEEEEeCCCCCcccccccccCCCCeeEEEecCCCC--Cee
Q 015484 291 --MTVPLHILSSHTEEVFQVEWDPNHETVLASSADD---RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKA--KIS 363 (406)
Q Consensus 291 --~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~ 363 (406)
+......+..+...+.. .|+|+++.+++.+..+ +.|.+||+...... ....+..|.. .+.
T Consensus 273 ~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~------------~~~~l~~~~~~~~~~ 339 (710)
T 2xdw_A 273 ITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES------------KWKVLVPEHEKDVLE 339 (710)
T ss_dssp SCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGG------------GCEEEECCCSSCEEE
T ss_pred cCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc------------cceeccCCCCCCeEE
Confidence 43235666666666655 4888988655555443 36999998763210 0111222322 578
Q ss_pred eEEeCCCCCcEEEEEeCCCc--EEEEeCCCc
Q 015484 364 DFSWNKNDPWVISSVADDNT--VQVWQMTDS 392 (406)
Q Consensus 364 ~~~~s~~~~~~l~s~~~dg~--i~iw~~~~~ 392 (406)
+++|++++. ++++...|+. |.+|++.++
T Consensus 340 ~~~~~~~~~-lv~~~~~~g~~~l~~~~~~~g 369 (710)
T 2xdw_A 340 WVACVRSNF-LVLCYLHDVKNTLQLHDLATG 369 (710)
T ss_dssp EEEEETTTE-EEEEEEETTEEEEEEEETTTC
T ss_pred EEEEEcCCE-EEEEEEECCEEEEEEEECCCC
Confidence 899997665 7888888885 556676444
No 195
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.50 E-value=1.1e-11 Score=109.23 Aligned_cols=208 Identities=12% Similarity=0.067 Sum_probs=145.7
Q ss_pred ceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC
Q 015484 159 DLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC 238 (406)
Q Consensus 159 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg 238 (406)
...+..+.....+++|+|+++.+++++..++.|..|+...+ . ..+..+...+.+++++| +++++++...++
T Consensus 20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-------~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~ 90 (296)
T 3e5z_A 20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-------SPEMHPSHHQNGHCLNK-QGHLIACSHGLR 90 (296)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-------EEEESSCSSEEEEEECT-TCCEEEEETTTT
T ss_pred EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-------EEEECCCCCcceeeECC-CCcEEEEecCCC
Confidence 45555666778899999988757888888999999998764 1 23334567789999998 677887777778
Q ss_pred cEEEEECCCCcccccccc----cCCCeeEEEecCCCCcEEEE----Ee-------------CCCcEEEEeCCCCCCCcEE
Q 015484 239 QLMIWDLRTNQTQQRVKA----HEKEVNYLSFNPYNEWVLAT----AS-------------SDTTVALFDMRKMTVPLHI 297 (406)
Q Consensus 239 ~i~i~d~~~~~~~~~~~~----~~~~v~~i~~~~~~~~~l~~----~~-------------~dg~i~vwd~~~~~~~~~~ 297 (406)
.|.+||..+++....... ....++.++++|+|. ++++ |+ ..+.|..++.. .. +..
T Consensus 91 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~-~~~ 166 (296)
T 3e5z_A 91 RLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GT-LSA 166 (296)
T ss_dssp EEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SC-EEE
T ss_pred eEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC--CC-EEE
Confidence 999999987765332211 123567899999998 7776 32 12456666654 22 455
Q ss_pred ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEE
Q 015484 298 LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISS 377 (406)
Q Consensus 298 ~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s 377 (406)
+..+......++|+|+++. +++.+.++.|.+|++...+.... ...++ ..+...+..++++++|. ++++
T Consensus 167 ~~~~~~~~~gi~~s~dg~~-lv~~~~~~~i~~~~~~~~g~~~~--------~~~~~--~~~~~~p~~i~~d~~G~-l~v~ 234 (296)
T 3e5z_A 167 PIRDRVKPNGLAFLPSGNL-LVSDTGDNATHRYCLNARGETEY--------QGVHF--TVEPGKTDGLRVDAGGL-IWAS 234 (296)
T ss_dssp EECCCSSEEEEEECTTSCE-EEEETTTTEEEEEEECSSSCEEE--------EEEEE--CCSSSCCCSEEEBTTSC-EEEE
T ss_pred eecCCCCCccEEECCCCCE-EEEeCCCCeEEEEEECCCCcCcC--------CCeEe--eCCCCCCCeEEECCCCC-EEEE
Confidence 5566677899999999985 57888889999999863111100 01111 33455678999999998 5665
Q ss_pred EeCCCcEEEEeCCCcc
Q 015484 378 VADDNTVQVWQMTDSI 393 (406)
Q Consensus 378 ~~~dg~i~iw~~~~~~ 393 (406)
. ++.|.+|+.....
T Consensus 235 ~--~~~v~~~~~~g~~ 248 (296)
T 3e5z_A 235 A--GDGVHVLTPDGDE 248 (296)
T ss_dssp E--TTEEEEECTTSCE
T ss_pred c--CCeEEEECCCCCE
Confidence 5 7889999987543
No 196
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.49 E-value=1.2e-10 Score=102.33 Aligned_cols=241 Identities=8% Similarity=-0.006 Sum_probs=164.5
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
....+.++.+.+++ .+.++...++.|.+|+.. .... ...+..+...+.++++.+++. ++++...++.|..
T Consensus 18 ~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~-~~~~-------~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~v~~ 87 (300)
T 2qc5_A 18 PDSGPYGITSSEDG-KVWFTQHKANKISSLDQS-GRIK-------EFEVPTPDAKVMCLIVSSLGD-IWFTENGANKIGK 87 (300)
T ss_dssp TTCCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEE-------EEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEE
T ss_pred CCCCcceeeECCCC-CEEEEcCCCCeEEEECCC-CceE-------EEECCCCCCcceeEEECCCCC-EEEEecCCCeEEE
Confidence 34678999999998 566666678899999977 2211 111223346788999998887 7777766889999
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccc-cccccCCCeeEEEecCCCCc
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ-RVKAHEKEVNYLSFNPYNEW 272 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~i~~~~~~~~ 272 (406)
||.. +.. .. .........+.++++.+ ++.++++...++.|..+|.. ++... .+......+..+++++++.
T Consensus 88 ~d~~-g~~-~~----~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~- 158 (300)
T 2qc5_A 88 LSKK-GGF-TE----YPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA- 158 (300)
T ss_dssp ECTT-SCE-EE----EECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-
T ss_pred ECCC-CCe-EE----ecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC-
Confidence 9977 322 11 11122335688999997 67788777778899999987 54432 1222345788999999998
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeE
Q 015484 273 VLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELL 352 (406)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (406)
++++...++.|..+|. ...........+...+..+++++++. +.++....+.|.+||... . ...
T Consensus 159 l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~g-~-------------~~~ 222 (300)
T 2qc5_A 159 LWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGA-LWFVEIMGNKIGRITTTG-E-------------ISE 222 (300)
T ss_dssp EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECTTC-C-------------EEE
T ss_pred EEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCC-EEEEccCCCEEEEEcCCC-c-------------EEE
Confidence 6666666788999998 33321112223445789999999885 666666677899999732 1 111
Q ss_pred EEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 353 FSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 353 ~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
.....+...+.+++++++|. ++++...++.|..|+..
T Consensus 223 ~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 223 YDIPTPNARPHAITAGKNSE-IWFTEWGANQIGRITND 259 (300)
T ss_dssp EECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT
T ss_pred EECCCCCCCceEEEECCCCC-EEEeccCCCeEEEECCC
Confidence 12223455688999999998 67776667889999984
No 197
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.49 E-value=6.5e-12 Score=125.16 Aligned_cols=247 Identities=11% Similarity=-0.004 Sum_probs=152.7
Q ss_pred CCceeEEEEcCCCCcEEEEEeCC-C----eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSS-C----EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~d-g----~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
...+..++|+|+|. .||.+..+ | +|++||+.++.. . ....+...+..++|+|+ + .|+.++.++
T Consensus 162 ~~~~~~~~~SPDG~-~la~~~~~~G~e~~~i~v~dl~tg~~--------~-~~~~~~~~~~~~~wspD-~-~l~~~~~~~ 229 (741)
T 1yr2_A 162 ATALDAWAASDDGR-LLAYSVQDGGSDWRTVKFVGVADGKP--------L-ADELKWVKFSGLAWLGN-D-ALLYSRFAE 229 (741)
T ss_dssp -EEEEEEEECTTSS-EEEEEEEETTCSEEEEEEEETTTCCE--------E-EEEEEEEESCCCEESTT-S-EEEEEECCC
T ss_pred CEEEEeEEECCCCC-EEEEEEcCCCCceEEEEEEECCCCCC--------C-CccCCCceeccEEEECC-C-EEEEEEecC
Confidence 34688999999995 55555433 3 599999988432 1 11111222357899999 7 777766655
Q ss_pred e--------------EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC-----CcEEEEECCCC--
Q 015484 190 K--------------ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD-----CQLMIWDLRTN-- 248 (406)
Q Consensus 190 ~--------------i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-----g~i~i~d~~~~-- 248 (406)
. |.+|++.++.....+ +.....+...+..+.|+| +++.++..+.+ ..|++||+.++
T Consensus 230 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~l--v~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~ 306 (741)
T 1yr2_A 230 PKEGQAFQALNYNQTVWLHRLGTPQSADQP--VFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKI 306 (741)
T ss_dssp C--------CCCCCEEEEEETTSCGGGCEE--EECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEE
T ss_pred cccccccccCCCCCEEEEEECCCCchhCEE--EeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCC
Confidence 4 889998765432111 111122333588999999 56666555543 38999999876
Q ss_pred cccccccccCCCeeEEEecCCCCcEEEEEeC----CCcEEEEeCCCCC-CCcEEecCCCCCeEEEEEcCCCCCEEEEEeC
Q 015484 249 QTQQRVKAHEKEVNYLSFNPYNEWVLATASS----DTTVALFDMRKMT-VPLHILSSHTEEVFQVEWDPNHETVLASSAD 323 (406)
Q Consensus 249 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~----dg~i~vwd~~~~~-~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~ 323 (406)
+....+..+...+.... +|+++ .|+..+. ++.|.+||+.+.. .....+..+...+..+.|+ +..++++...
T Consensus 307 ~~~~~l~~~~~~~~~~~-~~dg~-~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~ 382 (741)
T 1yr2_A 307 GPVTALIPDLKAQWDFV-DGVGD-QLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIH 382 (741)
T ss_dssp CCCEEEECSSSSCEEEE-EEETT-EEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEE
T ss_pred cccEEecCCCCceEEEE-eccCC-EEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEE
Confidence 31344444444444443 47888 5555554 3459999987642 2223334444556678887 3458889999
Q ss_pred CCcEEEEeCCCCCcccccccccCCCCeeEEEecC-CCCCeeeEEeCCCCCcEEEEEeC---CCcEEEEeCCCcc
Q 015484 324 DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG-HKAKISDFSWNKNDPWVISSVAD---DNTVQVWQMTDSI 393 (406)
Q Consensus 324 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~~l~s~~~---dg~i~iw~~~~~~ 393 (406)
|+..+||.+...+ .....+.. +...|..+.++|+++.++++.+. .+.|++||+.++.
T Consensus 383 dg~~~l~~~~~~g-------------~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 383 DAKSQVLAFDLDG-------------KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp TTEEEEEEEETTS-------------CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CCEEEEEEEeCCC-------------CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 9988888664211 12222222 35568889999998865555443 4789999998764
No 198
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.49 E-value=7e-11 Score=112.96 Aligned_cols=267 Identities=13% Similarity=0.133 Sum_probs=172.0
Q ss_pred EEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEec----CCCCCeE
Q 015484 107 EIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWS----PFKEGYL 182 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~~~~l 182 (406)
++...+.....+..+.|+|+++ ++.+++.++.|.+||+... ..+....+... .....++|+ |+|+ ++
T Consensus 188 ~v~~~i~~g~~p~~v~~SpDGr-~lyv~~~dg~V~viD~~~~------t~~~v~~i~~G-~~P~~ia~s~~~~pDGk-~l 258 (567)
T 1qks_A 188 EIKTVLDTGYAVHISRLSASGR-YLFVIGRDGKVNMIDLWMK------EPTTVAEIKIG-SEARSIETSKMEGWEDK-YA 258 (567)
T ss_dssp CEEEEEECSSCEEEEEECTTSC-EEEEEETTSEEEEEETTSS------SCCEEEEEECC-SEEEEEEECCSTTCTTT-EE
T ss_pred eEEEEEeCCCCccceEECCCCC-EEEEEcCCCeEEEEECCCC------CCcEeEEEecC-CCCceeEEccccCCCCC-EE
Confidence 3455566666788999999994 6777788999999999511 12334455443 345789999 6898 55
Q ss_pred EEe-cCCCeEEEEeCCCccCCceeeeeee-ee---ccCc-cEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccc--ccc
Q 015484 183 VSG-SHDNKICLWDVSALAQDKVIDAMHV-YE---AHES-VVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ--QRV 254 (406)
Q Consensus 183 ~s~-~~dg~i~iwd~~~~~~~~~~~~~~~-~~---~~~~-~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~ 254 (406)
+++ ..+++|.++|..+.+....+..... .. .|.. .+..+..++.+..+++....+|.|.++|....+.+ ..+
T Consensus 259 ~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i 338 (567)
T 1qks_A 259 IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI 338 (567)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE
T ss_pred EEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee
Confidence 555 4569999999877543332221100 00 1222 57788888866777777788899999998765432 222
Q ss_pred cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec-----CCCCCeEEEEEcCCCCCEEEEEe-CCCcEE
Q 015484 255 KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILS-----SHTEEVFQVEWDPNHETVLASSA-DDRRLM 328 (406)
Q Consensus 255 ~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~h~~~v~~i~~~p~~~~~l~s~~-~dg~i~ 328 (406)
........+.|+|++++++++...++.|.++|+.+.+. +..+. .|.+.-..+ ++|++..+.+++. .++.|.
T Consensus 339 -~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl-~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vs 415 (567)
T 1qks_A 339 -SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL-VAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVA 415 (567)
T ss_dssp -ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE-EEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEE
T ss_pred -eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcE-EEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEE
Confidence 23345678899999996666666778999999998653 33332 243322222 6887555666664 468999
Q ss_pred EEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeC------CCcEEEEeCCCc
Q 015484 329 VWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVAD------DNTVQVWQMTDS 392 (406)
Q Consensus 329 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~------dg~i~iw~~~~~ 392 (406)
++|........ ...+.+..+......-..+..+|+++++.++... .+.|.++|+.+.
T Consensus 416 vid~~~~~~~~-------~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 416 LIGTDPEGHPD-------NAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEECCTTTCTT-------TBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred EecCCCCCCcc-------ccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 99987622110 1134455555443334557899999975554421 358999999875
No 199
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.48 E-value=1.5e-12 Score=117.57 Aligned_cols=186 Identities=17% Similarity=0.108 Sum_probs=128.9
Q ss_pred CeeEEEecCCCCCeEEEecCCCeEEEEeCCCccC-----CceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEE
Q 015484 168 EGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQ-----DKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMI 242 (406)
Q Consensus 168 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i 242 (406)
.++.+++++..+ ++++|+.++ +.+|++..... ...+.+... ..+.. |+.++| ++..|+++ .++.|++
T Consensus 39 ~~nlLais~~~g-ll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~f---d~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE-KEIPD-VIFVCF---HGDQVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE-EECTT-EEEEEE---ETTEEEEE-ESSEEEE
T ss_pred cccEEEEcCCCC-EEEEeCCCE-EEEEEhhHhhhhhccccccccceEE-eeCCC-eeEEEE---CCCEEEEE-cCCcEEE
Confidence 688999999887 999998875 55698765431 001222122 23556 999999 46777777 8899999
Q ss_pred EECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEe
Q 015484 243 WDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSA 322 (406)
Q Consensus 243 ~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~ 322 (406)
||+++.........+...+.++.+.+. -+++++.||.|.+||+..... .. +...|++++|+|+| ++.|.
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~-~~----~~~~Vs~v~WSpkG---~~vg~ 179 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKST-KQ----LAQNVTSFDVTNSQ---LAVLL 179 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCE-EE----EEESEEEEEECSSE---EEEEE
T ss_pred EEchhhhccCccceeecceeeEEecCC---CEEEEECCCCEEEEEccCCcc-cc----ccCCceEEEEcCCc---eEEEE
Confidence 999987765566667778888877654 288889999999999986553 22 44689999999999 56788
Q ss_pred CCCcEEEEeCCCCCcc-cccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEE
Q 015484 323 DDRRLMVWDLNRIGDE-QLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISS 377 (406)
Q Consensus 323 ~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s 377 (406)
.||.+++|+....... .... ..|+.+ ....+|...|.++.|.+++.+ +++
T Consensus 180 ~dg~i~~~~~~~~~~~~k~~I---~~Pp~~-~~~~~~~~~V~sI~wl~~~~f-lv~ 230 (388)
T 1xip_A 180 KDRSFQSFAWRNGEMEKQFEF---SLPSEL-EELPVEEYSPLSVTILSPQDF-LAV 230 (388)
T ss_dssp TTSCEEEEEEETTEEEEEEEE---CCCHHH-HTSCTTTSEEEEEEESSSSEE-EEE
T ss_pred cCCcEEEEcCCCcccccccee---cCCccc-ccccCCCeeEEEEEEecCCeE-EEE
Confidence 9999999987652210 0000 000000 000146788999999999884 444
No 200
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.45 E-value=7.7e-11 Score=105.37 Aligned_cols=229 Identities=9% Similarity=-0.026 Sum_probs=147.8
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeC
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV 196 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 196 (406)
-.....|+|++..++++...++.|.+|+...... ..+. ....+.+++|++++. ++++. .+ .|.+||.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~---------~~~~-~~~~v~~i~~~~dg~-l~v~~-~~-gl~~~d~ 116 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK---------TVHA-LPFMGSALAKISDSK-QLIAS-DD-GLFLRDT 116 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE---------EEEE-CSSCEEEEEEEETTE-EEEEE-TT-EEEEEET
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE---------EEEE-CCCcceEEEEeCCCe-EEEEE-CC-CEEEEEC
Confidence 3467899998767888888889999999876321 1222 345789999999887 65554 44 4999998
Q ss_pred CCccCCceeeeeeeee--ccCccEEEEEeeCCCCCEEEEEec------CCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 197 SALAQDKVIDAMHVYE--AHESVVEDVSWHLKNENLFGSAGD------DCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 197 ~~~~~~~~~~~~~~~~--~~~~~i~~i~~~p~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
.++... .+.... .....+++++++| +++++++... .+.|..++ +++. ..+.......+.++|+|
T Consensus 117 ~~g~~~----~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~ 188 (326)
T 2ghs_A 117 ATGVLT----LHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKV-TKLFADISIPNSICFSP 188 (326)
T ss_dssp TTCCEE----EEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEEESSEEEEEECT
T ss_pred CCCcEE----EEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCCCcccCCeEEcC
Confidence 765421 111111 1124688999999 5566655432 24566666 3432 22222334567899999
Q ss_pred CCCcEEEEEeCCCcEEEEeCC--CC-CC----CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccc
Q 015484 269 YNEWVLATASSDTTVALFDMR--KM-TV----PLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE 341 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~--~~-~~----~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 341 (406)
+++.++++.+.++.|.+||+. ++ .. .+..+......+..+++.+++. +.++...++.|.+||...
T Consensus 189 dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~g------- 260 (326)
T 2ghs_A 189 DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDG------- 260 (326)
T ss_dssp TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTTC-------
T ss_pred CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECCCC-------
Confidence 998455555667899999986 43 21 1122223345678899999996 566666678899998742
Q ss_pred ccccCCCCeeEEEecCCCCCeeeEEeC-CCCCcEEEEEeCCC
Q 015484 342 LDAEDGPPELLFSHGGHKAKISDFSWN-KNDPWVISSVADDN 382 (406)
Q Consensus 342 ~~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~~~l~s~~~dg 382 (406)
..+..+..+...+++++|+ +++..++++...++
T Consensus 261 --------~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~~ 294 (326)
T 2ghs_A 261 --------NHIARYEVPGKQTTCPAFIGPDASRLLVTSAREH 294 (326)
T ss_dssp --------CEEEEEECSCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred --------CEEEEEECCCCCcEEEEEecCCCCEEEEEecCCC
Confidence 3333344455579999998 88875666655543
No 201
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.44 E-value=7.6e-12 Score=123.78 Aligned_cols=201 Identities=11% Similarity=-0.004 Sum_probs=131.8
Q ss_pred CCCCCeeEEEecCCCCCeEE-----EecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC
Q 015484 164 GHDKEGYGLSWSPFKEGYLV-----SGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC 238 (406)
Q Consensus 164 ~h~~~v~~l~~~~~~~~~l~-----s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg 238 (406)
+|...+.+++|||+|+ +|+ .|+.+..|++||+.+++.... ..+. ......++|+| +++.|+.++.|.
T Consensus 118 ~~~~~~~~~~~SPDG~-~la~~~~~~G~~~~~i~v~dl~tg~~~~~----~~~~--~~~~~~~~wsp-Dg~~l~~~~~d~ 189 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGK-KVAFAQKPNAADEAVLHVIDVDSGEWSKV----DVIE--GGKYATPKWTP-DSKGFYYEWLPT 189 (695)
T ss_dssp SSCEEEEEEEECTTSS-EEEEEEEETTCSCCEEEEEETTTCCBCSS----CCBS--CCTTCCCEECT-TSSEEEEEECCC
T ss_pred CCCEEEEEEEECCCCC-EEEEEECCCCCceEEEEEEECCCCCCcCC----cccC--cccccceEEec-CCCEEEEEEecC
Confidence 4555788999999999 777 455567899999998753200 0111 11126789999 567777777766
Q ss_pred c-------------EEEEECCCCccc----ccccccCCCeeEEEecCCCCcEEEEEeCCC----cEEEEeCCCCCCCcEE
Q 015484 239 Q-------------LMIWDLRTNQTQ----QRVKAHEKEVNYLSFNPYNEWVLATASSDT----TVALFDMRKMTVPLHI 297 (406)
Q Consensus 239 ~-------------i~i~d~~~~~~~----~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg----~i~vwd~~~~~~~~~~ 297 (406)
. |++|++.++... .....+...+.++.|+|+|+ +|+.++.++ .|.++|.... ....
T Consensus 190 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~l~~~~~~~~--~~~~ 266 (695)
T 2bkl_A 190 DPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGK-YLFVYILRGWSENDVYWKRPGEK--DFRL 266 (695)
T ss_dssp CTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSC-CEEEEEEETTTEEEEEEECTTCS--SCEE
T ss_pred CCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCC-EEEEEEeCCCCceEEEEEcCCCC--ceEE
Confidence 5 999999887632 22233446788999999999 455444444 6677765443 2555
Q ss_pred ecCCCCCeEEEEEcCCCCCEEEEEe---CCCcEEEEeCCCCCcccccccccCCCCeeEEEecCC-CCCeeeEEeCCCCCc
Q 015484 298 LSSHTEEVFQVEWDPNHETVLASSA---DDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH-KAKISDFSWNKNDPW 373 (406)
Q Consensus 298 ~~~h~~~v~~i~~~p~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~ 373 (406)
+..+...+....| +++. +++.+. .++.|.+||+...... ........+ ...+.+++|+ ++.
T Consensus 267 l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~-----------~~~~l~~~~~~~~l~~~~~~-~~~- 331 (695)
T 2bkl_A 267 LVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARA-----------SWKEIVPEDSSASLLSVSIV-GGH- 331 (695)
T ss_dssp EEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGG-----------GCEEEECCCSSCEEEEEEEE-TTE-
T ss_pred eecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCcc-----------CCeEEecCCCCCeEEEEEEE-CCE-
Confidence 6666666777777 6676 666665 3588999998763210 011112222 4457888888 444
Q ss_pred EEEEEeCCCcEEEEeCC
Q 015484 374 VISSVADDNTVQVWQMT 390 (406)
Q Consensus 374 ~l~s~~~dg~i~iw~~~ 390 (406)
++++...|+..+||.+.
T Consensus 332 lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 332 LSLEYLKDATSEVRVAT 348 (695)
T ss_dssp EEEEEEETTEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEe
Confidence 88999999998888654
No 202
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.43 E-value=5.1e-10 Score=98.31 Aligned_cols=238 Identities=7% Similarity=-0.007 Sum_probs=157.8
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEE
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLW 194 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 194 (406)
...+..+++.+++ .+.++...++.|..|+... ... ...+......+.++++.+++. ++++...++.|..+
T Consensus 61 ~~~~~~i~~~~~g-~l~v~~~~~~~v~~~d~~g-~~~-------~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~ 130 (300)
T 2qc5_A 61 DAKVMCLIVSSLG-DIWFTENGANKIGKLSKKG-GFT-------EYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKL 130 (300)
T ss_dssp TCCEEEEEECTTS-CEEEEETTTTEEEEECTTS-CEE-------EEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEE
T ss_pred CCcceeEEECCCC-CEEEEecCCCeEEEECCCC-CeE-------EecCCCCCCCCccceECCCCC-EEEEccCCCeEEEE
Confidence 4678999999988 5666666678899998773 110 112222346788999998887 77777668899999
Q ss_pred eCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccc-ccccCCCeeEEEecCCCCcE
Q 015484 195 DVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQR-VKAHEKEVNYLSFNPYNEWV 273 (406)
Q Consensus 195 d~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~ 273 (406)
+.. +... . .........+..+++.+ +++++++...++.|..+|. +++.... .......+..+++++++. +
T Consensus 131 ~~~-g~~~-~----~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~-l 201 (300)
T 2qc5_A 131 TAD-GTIY-E----YDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGA-L 201 (300)
T ss_dssp CTT-SCEE-E----EECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-E
T ss_pred CCC-CCEE-E----ccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCC-E
Confidence 876 3211 1 11222345688999998 5667777666788999998 4443321 122345688999999887 6
Q ss_pred EEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEE
Q 015484 274 LATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLF 353 (406)
Q Consensus 274 l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 353 (406)
+++....+.|.+||. .+.........+...+.++++++++. +.++...++.|..||... . ...+
T Consensus 202 ~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~g--~------------~~~~ 265 (300)
T 2qc5_A 202 WFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSE-IWFTEWGANQIGRITNDN--T------------IQEY 265 (300)
T ss_dssp EEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTTS--C------------EEEE
T ss_pred EEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCC-EEEeccCCCeEEEECCCC--c------------EEEE
Confidence 666666678999998 33321122333456789999999986 666666678999999732 1 1112
Q ss_pred EecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 354 SHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 354 ~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
........+.+++++++|. ++++.. . .|..+++.
T Consensus 266 ~~~~~~~~~~~i~~~~~g~-l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 266 QLQTENAEPHGITFGKDGS-VWFALK-C-KIGKLNLN 299 (300)
T ss_dssp ECCSTTCCCCCEEECTTSC-EEEECS-S-EEEEEEEC
T ss_pred ECCccCCccceeEeCCCCC-EEEEcc-C-ceEEeCCC
Confidence 2222345688999999998 565544 4 66666653
No 203
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.43 E-value=5.7e-11 Score=102.97 Aligned_cols=199 Identities=10% Similarity=0.006 Sum_probs=140.8
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee-CCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK-GHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
+...+.++++.+++ .++++.. ++.|.+|+..... ...+. .....+.++++++++. ++++...++.|.
T Consensus 65 ~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~~~---------~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~ 132 (270)
T 1rwi_B 65 GLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGSNN---------QTVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVV 132 (270)
T ss_dssp SCCSCCCEEECTTC-CEEEEET-TTEEEEECTTCSC---------CEECCCCSCSSEEEEEECTTCC-EEEEEGGGTEEE
T ss_pred CcCCcceeEECCCC-CEEEEcC-CCEEEEEeCCCce---------EeeeecCCcCCCcceEECCCCC-EEEEECCCCEEE
Confidence 33568899999988 4565555 8899999987632 11122 2235688999999887 777777788999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCc
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEW 272 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 272 (406)
+|+..+... . .........+.++++++ +++++++...++.|.+||................+..++++++|.
T Consensus 133 ~~~~~~~~~--~----~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~- 204 (270)
T 1rwi_B 133 KLAAGSKTQ--T----VLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGT- 204 (270)
T ss_dssp EECTTCCSC--E----ECCCCSCCSCCCEEECT-TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCC-
T ss_pred EEECCCcee--E----eeccccCCCceeEEEeC-CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCC-
Confidence 997544321 1 11112234578899998 567887777788999999887654333223336688999999986
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 273 VLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
++++...++.|.+||...... ......+...+.+++++|++. ++++...++.|+++++..
T Consensus 205 l~v~~~~~~~v~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 205 VYVTEHNTNQVVKLLAGSTTS-TVLPFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp EEEEETTTSCEEEECTTCSCC-EECCCCSCSCEEEEEECTTCC-EEEEEGGGTEEEEECCCG
T ss_pred EEEEECCCCcEEEEcCCCCcc-eeeccCCCCCceeEEECCCCC-EEEEECCCCEEEEEcCCC
Confidence 777777788999999875432 222223335789999999996 788888999999999875
No 204
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.42 E-value=4.2e-11 Score=118.29 Aligned_cols=249 Identities=13% Similarity=0.100 Sum_probs=154.3
Q ss_pred cCCceeEEEEcCCCCcEEE-EEeC----CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 114 VDGEVNRARCMPQKPNLVG-TKTS----SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~-~~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
|...+..++|+|++. +|| +.+. ..+|++||+.++... ...+.. .....++|+ +++ .|+.++.+
T Consensus 127 ~~~~l~~~~~SpDg~-~lAy~~~~~G~~~~~i~v~dl~tg~~~-------~~~~~~--~k~~~~~Ws-Dg~-~l~y~~~~ 194 (693)
T 3iuj_A 127 GTTALDQLSFSRDGR-ILAYSLSLAGSDWREIHLMDVESKQPL-------ETPLKD--VKFSGISWL-GNE-GFFYSSYD 194 (693)
T ss_dssp SCCEEEEEEECTTSS-EEEEEEECSSCCEEEEEEEETTTCSEE-------EEEEEE--EESCCCEEE-TTT-EEEEEESS
T ss_pred CcEEEEEEEECCCCC-EEEEEEecCCCceEEEEEEECCCCCCC-------ccccCC--ceeccEEEe-CCC-EEEEEEec
Confidence 445688889999995 455 3322 247999999884321 011111 113578899 888 67777666
Q ss_pred C-------------eEEEEeCCCccCCceeeeeeeeec-cCccEEEEEeeCCCCCEEEEEec---CCcEEEEECCCCc-c
Q 015484 189 N-------------KICLWDVSALAQDKVIDAMHVYEA-HESVVEDVSWHLKNENLFGSAGD---DCQLMIWDLRTNQ-T 250 (406)
Q Consensus 189 g-------------~i~iwd~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~l~~~~~---dg~i~i~d~~~~~-~ 250 (406)
. .|.+|++.+...... .+..... +......+.|+|++..++++... ...|+++|+.++. .
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~--~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~ 272 (693)
T 3iuj_A 195 KPDGSELSARTDQHKVYFHRLGTAQEDDR--LVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAP 272 (693)
T ss_dssp CCC-------CCCCEEEEEETTSCGGGCE--EEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCC
T ss_pred CcccccccccCCCcEEEEEECCCCcccce--EEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCc
Confidence 3 399999887543211 1222222 34457789999955444454442 3589999998764 3
Q ss_pred cccccccCCCeeEEEecCCCCcEEEEEeCC---CcEEEEeCCCCCC-CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC-
Q 015484 251 QQRVKAHEKEVNYLSFNPYNEWVLATASSD---TTVALFDMRKMTV-PLHILSSHTEEVFQVEWDPNHETVLASSADDR- 325 (406)
Q Consensus 251 ~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~-~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg- 325 (406)
...+..+....... |++++..+++....+ +.|..+|+.+... ....+..|...+. .|+++++.++++...++
T Consensus 273 ~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~ 349 (693)
T 3iuj_A 273 LLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDAT 349 (693)
T ss_dssp CEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTE
T ss_pred eEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCe
Confidence 44554455555554 666677566665554 5799999987542 1355666776665 88999987666666666
Q ss_pred -cEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCC---CcEEEEeCCCcc
Q 015484 326 -RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADD---NTVQVWQMTDSI 393 (406)
Q Consensus 326 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~d---g~i~iw~~~~~~ 393 (406)
.|++|++... ............+..+.+++++..++++.+.. +.|..||+.++.
T Consensus 350 ~~l~~~d~~g~--------------~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 350 ARVEQFDYEGK--------------RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEEEECTTSC--------------EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred eEEEEEECCCC--------------eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 5788887641 11111112344577788888888655555432 789999987764
No 205
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.41 E-value=9.4e-10 Score=99.96 Aligned_cols=250 Identities=7% Similarity=-0.064 Sum_probs=153.0
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEe---------CCCeEEEEeCCCccccccCCCCCceeeeCC-------CCCeeEE
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKT---------SSCEVYVFDCAKQAEKQQDDCDPDLRLKGH-------DKEGYGL 172 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~l 172 (406)
...+.-...- .++++|+++.+.++.. .++.|.+||..+... ...+.-. ...-..+
T Consensus 60 ~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~--------~~~i~~~~~~~~~~g~~p~~~ 130 (373)
T 2mad_H 60 LGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP--------IADIELPDAPRFDVGPYSWMN 130 (373)
T ss_pred EEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcE--------EEEEECCCccccccCCCccce
Confidence 3444433333 9999999965444432 367899999976322 2222111 1234589
Q ss_pred EecCCCCCeEEEecC--CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc
Q 015484 173 SWSPFKEGYLVSGSH--DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT 250 (406)
Q Consensus 173 ~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~ 250 (406)
+|+|+|+ +|+.+.. ++.|.++| .+++.... .+.. .. ++.+.|.+...+++.+.||.+.++|. +++.
T Consensus 131 ~~spDG~-~l~v~n~~~~~~v~viD-~t~~~~~~-----~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~ 198 (373)
T 2mad_H 131 ANTPNNA-DLLFFQFAAGPAVGLVV-QGGSSDDQ-----LLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGA 198 (373)
T ss_pred EECCCCC-EEEEEecCCCCeEEEEE-CCCCEEeE-----EcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcE
Confidence 9999999 7777653 57899999 77643211 0111 11 24455666778888889999999999 7765
Q ss_pred ccccc-----ccCCCe-eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCC-cEEecC----------CCCCeEEEEEcCC
Q 015484 251 QQRVK-----AHEKEV-NYLSFNPYNEWVLATASSDTTVALFDMRKMTVP-LHILSS----------HTEEVFQVEWDPN 313 (406)
Q Consensus 251 ~~~~~-----~~~~~v-~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~----------h~~~v~~i~~~p~ 313 (406)
..... ....++ ....+.+++..++++ +..+.+.+.|+...... +..+.. .......+.++|+
T Consensus 199 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d 277 (373)
T 2mad_H 199 AGAGLVGAMLTAAQNLLTQPAQANKSGRIVWP-VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKS 277 (373)
T ss_pred EEEEeccccccCCcceeecceeEecCCEEEEE-cCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCC
Confidence 52221 111221 234556666534444 46789999999754321 111111 1123445788999
Q ss_pred CCCEEEEEe---------CCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEe-CCCc
Q 015484 314 HETVLASSA---------DDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVA-DDNT 383 (406)
Q Consensus 314 ~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~-~dg~ 383 (406)
++.++++.. ..+.|.++|+.+ .+.+..+.. ......++|+|+|+++++++. .++.
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t--------------~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~ 342 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLV--------------GQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEV 342 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEECCC--------------CEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCe
Confidence 886555443 135799999876 244444432 235889999999995566665 5899
Q ss_pred EEEEeCCCcccC
Q 015484 384 VQVWQMTDSIYR 395 (406)
Q Consensus 384 i~iw~~~~~~~~ 395 (406)
|.++|+.++...
T Consensus 343 V~ViD~~t~~vv 354 (373)
T 2mad_H 343 LHIYDAGAGDQD 354 (373)
T ss_pred EEEEECCCCCEE
Confidence 999999987653
No 206
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.40 E-value=7.3e-11 Score=105.58 Aligned_cols=224 Identities=10% Similarity=0.036 Sum_probs=145.2
Q ss_pred EEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCC-----CCeeEEEecCCCCCeE
Q 015484 108 IAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHD-----KEGYGLSWSPFKEGYL 182 (406)
Q Consensus 108 ~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~-----~~v~~l~~~~~~~~~l 182 (406)
....+........++++|++ .++++...++.|.+||..+... ...+.... .....+++ ++..++
T Consensus 76 ~~~~i~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~--------~~~i~~g~~~~~~~~p~~i~~--~~~~ly 144 (328)
T 3dsm_A 76 EVGRITGFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEI--------TGYIECPDMDMESGSTEQMVQ--YGKYVY 144 (328)
T ss_dssp EEEEEECCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEE--------EEEEECTTCCTTTCBCCCEEE--ETTEEE
T ss_pred EEEEcCCCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeE--------EEEEEcCCccccCCCcceEEE--ECCEEE
Confidence 34455666789999999988 6666655789999999987432 22232211 14556777 344244
Q ss_pred EEec-CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC----------CcEEEEECCCCccc
Q 015484 183 VSGS-HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD----------CQLMIWDLRTNQTQ 251 (406)
Q Consensus 183 ~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d----------g~i~i~d~~~~~~~ 251 (406)
++.. .++.|.++|+.+++... .+.. ......++++| ++++++++..+ +.|.++|..+++..
T Consensus 145 v~~~~~~~~v~viD~~t~~~~~------~i~~-g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~ 216 (328)
T 3dsm_A 145 VNCWSYQNRILKIDTETDKVVD------ELTI-GIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVE 216 (328)
T ss_dssp EEECTTCCEEEEEETTTTEEEE------EEEC-SSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE
T ss_pred EEcCCCCCEEEEEECCCCeEEE------EEEc-CCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEE
Confidence 4443 48999999998864322 2221 23456788998 56666665544 78999999988876
Q ss_pred cccccc-CCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEE-ecCCCCCeEEEEEcCCCCCEEEEE----eCCC
Q 015484 252 QRVKAH-EKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHI-LSSHTEEVFQVEWDPNHETVLASS----ADDR 325 (406)
Q Consensus 252 ~~~~~~-~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~h~~~v~~i~~~p~~~~~l~s~----~~dg 325 (406)
..+... ......++++|+++ .|.++.. .|.+||..+.+..... +..+......++++|++..++++. ..++
T Consensus 217 ~~~~~~~g~~p~~la~~~d~~-~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~ 293 (328)
T 3dsm_A 217 KQFKFKLGDWPSEVQLNGTRD-TLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQG 293 (328)
T ss_dssp EEEECCTTCCCEEEEECTTSC-EEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEE
T ss_pred EEEecCCCCCceeEEEecCCC-EEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCC
Confidence 665422 24678999999988 5555543 8999999876542111 222246789999999666677777 6789
Q ss_pred cEEEEeCCCCCcccccccccCCCCeeEEEe
Q 015484 326 RLMVWDLNRIGDEQLELDAEDGPPELLFSH 355 (406)
Q Consensus 326 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 355 (406)
.|.+||.. ++..........|..+.+.+
T Consensus 294 ~V~v~d~~--g~~~~~i~~G~~P~~~~~~~ 321 (328)
T 3dsm_A 294 IVYRYSPQ--GKLIDEFYVGIIPGAFCWKL 321 (328)
T ss_dssp EEEEECTT--CCEEEEEEEEESEEEEEEEC
T ss_pred EEEEECCC--CCEEEEEEeccCcceEEEec
Confidence 99999987 33333333333444444433
No 207
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.39 E-value=1.8e-10 Score=101.86 Aligned_cols=234 Identities=11% Similarity=0.010 Sum_probs=149.1
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
............|+|++..+++++..++.|..|+.... ...+..+...+.+++++++|. ++++...++.
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~----------~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~ 108 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT----------VDVLLDATAFTNGNAVDAQQR-LVHCEHGRRA 108 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSC----------EEEEEESCSCEEEEEECTTSC-EEEEETTTTE
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCC----------EEEEeCCCCccceeeECCCCC-EEEEECCCCE
Confidence 33455667889999999668888888999999987431 234445567789999999887 6666666688
Q ss_pred EEEEeCCCccCCceeeeeeeeec-cCccEEEEEeeCCCCCEEEE----Eec-------------CCcEEEEECCCCcccc
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEA-HESVVEDVSWHLKNENLFGS----AGD-------------DCQLMIWDLRTNQTQQ 252 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~ 252 (406)
|.+|+.. +.. ..+ ...... ....+++++++| +++++++ |.. .+.|..+|..+++...
T Consensus 109 v~~~~~~-g~~-~~~--~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~ 183 (305)
T 3dr2_A 109 ITRSDAD-GQA-HLL--VGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR 183 (305)
T ss_dssp EEEECTT-SCE-EEE--ECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE
T ss_pred EEEECCC-CCE-EEE--EeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE
Confidence 9999975 321 111 011111 123467899998 6677765 321 2568888877666433
Q ss_pred cccccCCCeeEEEecCCCCcEEEEEeCC------CcEEEEeCCCCCCC-cEE-ecCCCCCeEEEEEcCCCCCEEEEEeCC
Q 015484 253 RVKAHEKEVNYLSFNPYNEWVLATASSD------TTVALFDMRKMTVP-LHI-LSSHTEEVFQVEWDPNHETVLASSADD 324 (406)
Q Consensus 253 ~~~~~~~~v~~i~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~-~~~-~~~h~~~v~~i~~~p~~~~~l~s~~~d 324 (406)
.. .....+.++|+|++. .|+.+... +.|.+||+...... ... ..........++++++|. +. +++.+
T Consensus 184 ~~--~~~~p~gl~~spdg~-~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lw-v~~~~ 258 (305)
T 3dr2_A 184 MA--DLDHPNGLAFSPDEQ-TLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LW-SSSGT 258 (305)
T ss_dssp EE--EESSEEEEEECTTSS-EEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EE-ECCSS
T ss_pred Ee--cCCCCcceEEcCCCC-EEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EE-EecCC
Confidence 22 344568899999998 55555544 68999998753200 011 111234456789999996 34 44444
Q ss_pred CcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCc
Q 015484 325 RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNT 383 (406)
Q Consensus 325 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~ 383 (406)
.|.+|+... ..+..+..+. .+.+++|+++++.++ .++.++.
T Consensus 259 -gv~~~~~~g---------------~~~~~~~~~~-~~~~~~f~~d~~~L~-it~~~~l 299 (305)
T 3dr2_A 259 -GVCVFDSDG---------------QLLGHIPTPG-TASNCTFDQAQQRLF-ITGGPCL 299 (305)
T ss_dssp -EEEEECTTS---------------CEEEEEECSS-CCCEEEECTTSCEEE-EEETTEE
T ss_pred -cEEEECCCC---------------CEEEEEECCC-ceeEEEEeCCCCEEE-EEcCCeE
Confidence 499998753 3333333333 588999999888544 4444543
No 208
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.34 E-value=1.2e-10 Score=101.28 Aligned_cols=185 Identities=14% Similarity=0.059 Sum_probs=134.2
Q ss_pred CCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccC-ccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccc
Q 015484 178 KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHE-SVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA 256 (406)
Q Consensus 178 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 256 (406)
++ +|++++.++.|.+||..+++.. ..+..+. ..+.++.+.| ++++++ +.++.|..||. +++.+..+..
T Consensus 5 ~~-~lv~~~~~~~v~~~d~~tG~~~------w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~ 73 (276)
T 3no2_A 5 QH-LLVGGSGWNKIAIINKDTKEIV------WEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAA 73 (276)
T ss_dssp CE-EEEECTTCSEEEEEETTTTEEE------EEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEEC
T ss_pred Cc-EEEeeCCCCEEEEEECCCCeEE------EEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcC
Confidence 44 8999999999999999887543 3333343 4688899998 677877 45778999998 7888877765
Q ss_pred c-CCCeeEEEecCCCCcEEEEEeC-CCcEEEEeCCCCCCCcEEec------CCCCCeEEEEEcCCCCCEEEEEeCCCcEE
Q 015484 257 H-EKEVNYLSFNPYNEWVLATASS-DTTVALFDMRKMTVPLHILS------SHTEEVFQVEWDPNHETVLASSADDRRLM 328 (406)
Q Consensus 257 ~-~~~v~~i~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~------~h~~~v~~i~~~p~~~~~l~s~~~dg~i~ 328 (406)
. ...+.++.+.|+|. ++++.+. ++.|..+|. .++. +..+. .+......++..+++. ++++...++.|.
T Consensus 74 ~~~~~~~~~~~~~dG~-~lv~~~~~~~~v~~vd~-~Gk~-l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~~~~~v~ 149 (276)
T 3no2_A 74 PAGCEMQTARILPDGN-ALVAWCGHPSTILEVNM-KGEV-LSKTEFETGIERPHAQFRQINKNKKGN-YLVPLFATSEVR 149 (276)
T ss_dssp CTTCEEEEEEECTTSC-EEEEEESTTEEEEEECT-TSCE-EEEEEECCSCSSGGGSCSCCEECTTSC-EEEEETTTTEEE
T ss_pred CCCccccccEECCCCC-EEEEecCCCCEEEEEeC-CCCE-EEEEeccCCCCcccccccCceECCCCC-EEEEecCCCEEE
Confidence 4 35788999999999 7777766 677777775 3332 33332 1112345567889997 688899999999
Q ss_pred EEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 329 VWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 329 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.||... +.+..+..+ ..+.++...+++. ++++++.++.|..+|..++..
T Consensus 150 ~~d~~G---------------~~~w~~~~~-~~~~~~~~~~~g~-~~v~~~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 150 EIAPNG---------------QLLNSVKLS-GTPFSSAFLDNGD-CLVACGDAHCFVQLNLESNRI 198 (276)
T ss_dssp EECTTS---------------CEEEEEECS-SCCCEEEECTTSC-EEEECBTTSEEEEECTTTCCE
T ss_pred EECCCC---------------CEEEEEECC-CCccceeEcCCCC-EEEEeCCCCeEEEEeCcCCcE
Confidence 999862 344444433 3466788889998 677777788899999996644
No 209
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.31 E-value=1.6e-10 Score=104.03 Aligned_cols=260 Identities=13% Similarity=0.073 Sum_probs=154.7
Q ss_pred CeEEEEEeecCCceeEEEEcCCCCcEEEEEe--CCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeE
Q 015484 105 KVEIAQKIRVDGEVNRARCMPQKPNLVGTKT--SSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYL 182 (406)
Q Consensus 105 ~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 182 (406)
.++.+..+. ..+..++++|++ .++++.. .++.++||.+.+....+..... .....|-..+.++++++++. ++
T Consensus 8 ~~~~v~~~~--~~p~~va~~~~g-~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~--~~~~~~~~~p~gv~~d~~g~-L~ 81 (343)
T 2qe8_A 8 RLEVVAELS--LAPGNITLTPDG-RLFLSLHQFYQPEMQVAELTQDGLIPFPPQS--GNAIITFDTVLGIKSDGNGI-VW 81 (343)
T ss_dssp CCEEEEEES--SCEEEEEECTTS-CEEEEECGGGCCSCSEEEEETTEEEESCCCC--SSCCCCCSCEEEEEECSSSE-EE
T ss_pred eeEEEEEcC--CCcceEEECCCC-CEEEEeCCCCCCceEEEEECCCCeecCCCcc--cCcccceeEeeEEEEcCCCc-EE
Confidence 456565554 789999999998 5676653 2343555555432211100000 11224557899999999876 55
Q ss_pred EEecC-----CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe---cCCcEEEEECCCCcccccc
Q 015484 183 VSGSH-----DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG---DDCQLMIWDLRTNQTQQRV 254 (406)
Q Consensus 183 ~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~ 254 (406)
++-.. ++.|.+||+.+++....+..-.....+...++.++++|.++.++++.. .++.|.+||+.+++....+
T Consensus 82 v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~ 161 (343)
T 2qe8_A 82 MLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVL 161 (343)
T ss_dssp EEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEEC
T ss_pred EEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEe
Confidence 54332 578999999876432221100000112345689999985566666665 6789999999877654333
Q ss_pred ccc-----------------------------CCCeeEEEecCCCCcEEEEEeCCC-cEEEEeCC---CCCC-------C
Q 015484 255 KAH-----------------------------EKEVNYLSFNPYNEWVLATASSDT-TVALFDMR---KMTV-------P 294 (406)
Q Consensus 255 ~~~-----------------------------~~~v~~i~~~~~~~~~l~~~~~dg-~i~vwd~~---~~~~-------~ 294 (406)
..| ...++.|+|+|+++ .|+.+..++ .+..++.. .... .
T Consensus 162 ~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~-~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (343)
T 2qe8_A 162 QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENE-WLYLSPMHSTSMYRIKSADLSNLQLTDAELGSK 240 (343)
T ss_dssp TTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSC-EEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTT
T ss_pred cCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCC-EEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcc
Confidence 211 12368899999998 666665555 55555532 1110 0
Q ss_pred cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcE
Q 015484 295 LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWV 374 (406)
Q Consensus 295 ~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~ 374 (406)
+ ...++......+++++++. ++++...++.|.+||.... . ...+.. ..+...+.+++|.+++. +
T Consensus 241 ~-~~~g~~g~pdgia~d~~G~-l~va~~~~~~V~~~d~~~G-~-----------~~~~~~-~~~~~~p~~va~~~~g~-l 304 (343)
T 2qe8_A 241 I-ERYSEKPICDGISIDKDHN-IYVGDLAHSAIGVITSADR-A-----------YKLLVT-DEKLSWTDSFNFGSDGY-L 304 (343)
T ss_dssp C-EEEEECCSCSCEEECTTCC-EEEEEGGGTEEEEEETTTT-E-----------EEEEEE-CGGGSCEEEEEECTTSC-E
T ss_pred e-EecccCCCCceEEECCCCC-EEEEccCCCeEEEEECCCC-C-----------EEEEEE-CCceecCCeeEECCCCc-E
Confidence 1 1113344567799999985 7888888999999998321 0 111211 12345689999999987 6
Q ss_pred EEEEeCCCcEEEE
Q 015484 375 ISSVADDNTVQVW 387 (406)
Q Consensus 375 l~s~~~dg~i~iw 387 (406)
+++.+..+.+.+|
T Consensus 305 ~v~~~~~~~~~~f 317 (343)
T 2qe8_A 305 YFDCNQLHHSAPL 317 (343)
T ss_dssp EEEECCGGGSGGG
T ss_pred EEEeCcccccccc
Confidence 7776644444333
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.29 E-value=1.6e-09 Score=95.33 Aligned_cols=208 Identities=9% Similarity=0.126 Sum_probs=135.5
Q ss_pred CCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEE
Q 015484 165 HDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWD 244 (406)
Q Consensus 165 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d 244 (406)
+..-.-+..|++++..++++...++.|..||..++.. ..+ .....+.+++++| +++++++ . ++.|.+||
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-------~~~-~~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d 79 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-------QRV-TMDAPVSSVALRQ-SGGYVAT-I-GTKFCALN 79 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-------EEE-ECSSCEEEEEEBT-TSSEEEE-E-TTEEEEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-------EEE-eCCCceEEEEECC-CCCEEEE-E-CCeEEEEE
Confidence 3344568999997664777777889999999887532 111 2346789999998 5565544 3 56799999
Q ss_pred CCCCcccccccc----cCCCeeEEEecCCCCcEEEEEeC---------CCcEEEEeCCCCCCCcEEecCCCCCeEEEEEc
Q 015484 245 LRTNQTQQRVKA----HEKEVNYLSFNPYNEWVLATASS---------DTTVALFDMRKMTVPLHILSSHTEEVFQVEWD 311 (406)
Q Consensus 245 ~~~~~~~~~~~~----~~~~v~~i~~~~~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~ 311 (406)
..+++....... ....++.++++|+|. ++++... ...-.+|.+..... +..+..+....+.++|+
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~~~~~pngi~~s 157 (297)
T 3g4e_A 80 WKEQSAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFDQVDISNGLDWS 157 (297)
T ss_dssp TTTTEEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEEEESBEEEEEEC
T ss_pred CCCCcEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCCC-EEEEeeccccccceEEc
Confidence 987764322211 124578899999998 5554322 12334554443222 33333334557899999
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCC-CCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 312 PNHETVLASSADDRRLMVWDLNR-IGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 312 p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
|+++.++++.+.++.|.+|++.. .+... ..+....+..+...+..++++++|. +.++....+.|..|++.
T Consensus 158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~~--------~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~ 228 (297)
T 3g4e_A 158 LDHKIFYYIDSLSYSVDAFDYDLQTGQIS--------NRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPV 228 (297)
T ss_dssp TTSCEEEEEEGGGTEEEEEEECTTTCCEE--------EEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTT
T ss_pred CCCCEEEEecCCCCcEEEEeccCCCCccc--------CcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCC
Confidence 99987667777789999999742 11110 0122333333445678899999997 77777778889999998
Q ss_pred Cccc
Q 015484 391 DSIY 394 (406)
Q Consensus 391 ~~~~ 394 (406)
++.+
T Consensus 229 tG~~ 232 (297)
T 3g4e_A 229 TGKR 232 (297)
T ss_dssp TCCE
T ss_pred CceE
Confidence 6654
No 211
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.29 E-value=1.8e-10 Score=114.70 Aligned_cols=200 Identities=14% Similarity=0.061 Sum_probs=124.0
Q ss_pred CCCCeeEEEecCCCCCeEEEecCC-----CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCc
Q 015484 165 HDKEGYGLSWSPFKEGYLVSGSHD-----NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQ 239 (406)
Q Consensus 165 h~~~v~~l~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~ 239 (406)
|...+.+++|||+|+ +|+.++.+ ..|++||+.+++... . ..+...+..++|+|+ +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~-~la~~~~~~G~e~~~i~v~dl~tg~~~~------~-~~~~~~~~~~~wspD--~~l~~~~~~~~ 230 (741)
T 1yr2_A 161 GATALDAWAASDDGR-LLAYSVQDGGSDWRTVKFVGVADGKPLA------D-ELKWVKFSGLAWLGN--DALLYSRFAEP 230 (741)
T ss_dssp --EEEEEEEECTTSS-EEEEEEEETTCSEEEEEEEETTTCCEEE------E-EEEEEESCCCEESTT--SEEEEEECCCC
T ss_pred CCEEEEeEEECCCCC-EEEEEEcCCCCceEEEEEEECCCCCCCC------c-cCCCceeccEEEECC--CEEEEEEecCc
Confidence 334678999999998 77766543 369999998875311 1 111122357899994 55555555443
Q ss_pred --------------EEEEECCCCccc--ccc--cccCCCeeEEEecCCCCcEEEEEeCC-----CcEEEEeCCCCCCC-c
Q 015484 240 --------------LMIWDLRTNQTQ--QRV--KAHEKEVNYLSFNPYNEWVLATASSD-----TTVALFDMRKMTVP-L 295 (406)
Q Consensus 240 --------------i~i~d~~~~~~~--~~~--~~~~~~v~~i~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~-~ 295 (406)
|++|++.++... ..+ ..+...+..+.|+|+|+ +|+..+.+ ..|++||+.++... .
T Consensus 231 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 309 (741)
T 1yr2_A 231 KEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGR-WVVITSSEGTDPVNTVHVARVTNGKIGPV 309 (741)
T ss_dssp --------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC-EEEEEEECTTCSCCEEEEEEEETTEECCC
T ss_pred ccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCC-EEEEEEEccCCCcceEEEEECCCCCCccc
Confidence 899999876532 122 22233588999999999 55555433 38999999875222 4
Q ss_pred EEecCCCCCeEEEEEcCCCCCEEEEEeC---CCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCC
Q 015484 296 HILSSHTEEVFQVEWDPNHETVLASSAD---DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDP 372 (406)
Q Consensus 296 ~~~~~h~~~v~~i~~~p~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 372 (406)
..+..+...+.... +|+++.+++.+.. ++.|.+||+.... .........+...+.+++|+ .+
T Consensus 310 ~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~------------~~~~~l~~~~~~~l~~~~~~-~~- 374 (741)
T 1yr2_A 310 TALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGST------------PRFDTVVPESKDNLESVGIA-GN- 374 (741)
T ss_dssp EEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSS------------CEEEEEECCCSSEEEEEEEE-BT-
T ss_pred EEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCc------------cccEEEecCCCCeEEEEEEE-CC-
Confidence 45555555555553 4888764444332 3459999987521 01122223344456678887 34
Q ss_pred cEEEEEeCCCcEEEEeCC
Q 015484 373 WVISSVADDNTVQVWQMT 390 (406)
Q Consensus 373 ~~l~s~~~dg~i~iw~~~ 390 (406)
.++++...|+..+||.+.
T Consensus 375 ~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 375 RLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp EEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEECCEEEEEEEe
Confidence 488898999988877654
No 212
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.27 E-value=1.7e-09 Score=95.74 Aligned_cols=203 Identities=8% Similarity=0.108 Sum_probs=133.3
Q ss_pred cCCceeEEEEcCC-CCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee-CCCCCeeEEEecCCCCCeEEEecCC---
Q 015484 114 VDGEVNRARCMPQ-KPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK-GHDKEGYGLSWSPFKEGYLVSGSHD--- 188 (406)
Q Consensus 114 h~~~v~~i~~~p~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~d--- 188 (406)
+...+..+++.++ + .++++.. .+.|.+|+.. ..... .. ..... .....+.++++.+++. ++++...+
T Consensus 69 ~~~~~~~i~~~~~~g-~l~v~~~-~~~l~~~d~~-g~~~~---~~-~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~ 140 (314)
T 1pjx_A 69 YGGIPAGCQCDRDAN-QLFVADM-RLGLLVVQTD-GTFEE---IA-KKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVA 140 (314)
T ss_dssp EECCEEEEEECSSSS-EEEEEET-TTEEEEEETT-SCEEE---CC-SBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCT
T ss_pred CCCCCceEEEecCCC-cEEEEEC-CCCEEEEeCC-CCEEE---EE-eccCCCccccCCcCEEECCCCC-EEEEecCcccc
Confidence 4467899999998 6 5555443 4468899987 32210 00 00000 1124578999999887 66666554
Q ss_pred ------------CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEee----CCCCCEEEEEecCCcEEEEECC-CCcc-
Q 015484 189 ------------NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWH----LKNENLFGSAGDDCQLMIWDLR-TNQT- 250 (406)
Q Consensus 189 ------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~----p~~~~~l~~~~~dg~i~i~d~~-~~~~- 250 (406)
+.|..|+.. +.. ..+..+......++|+ |++..++++...++.|.+||+. .++.
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~-g~~-------~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~ 212 (314)
T 1pjx_A 141 PADYTRSMQEKFGSIYCFTTD-GQM-------IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIE 212 (314)
T ss_dssp TSCCCBTTSSSCEEEEEECTT-SCE-------EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEE
T ss_pred cccccccccCCCCeEEEECCC-CCE-------EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccc
Confidence 566667654 221 1111223456788999 8443556666678899999986 3331
Q ss_pred ----cccccccC-CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 015484 251 ----QQRVKAHE-KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDR 325 (406)
Q Consensus 251 ----~~~~~~~~-~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg 325 (406)
...+..+. .....++++++|. ++++...++.|.+||..++.. +..+..+...+.+++|+|+++.++++...++
T Consensus 213 ~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~ 290 (314)
T 1pjx_A 213 NKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGGQP-KMRIRCPFEKPSNLHFKPQTKTIFVTEHENN 290 (314)
T ss_dssp EEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCBSC-SEEEECSSSCEEEEEECTTSSEEEEEETTTT
T ss_pred cceEEEECCCCCCCCCCceEECCCCC-EEEEEcCCCEEEEEcCCCCcE-eEEEeCCCCCceeEEECCCCCEEEEEeCCCC
Confidence 12223232 5578899999998 777777788999999885443 5556666678999999999975666667778
Q ss_pred cEEEEeCCC
Q 015484 326 RLMVWDLNR 334 (406)
Q Consensus 326 ~i~iwd~~~ 334 (406)
.|..|++..
T Consensus 291 ~l~~~~~~~ 299 (314)
T 1pjx_A 291 AVWKFEWQR 299 (314)
T ss_dssp EEEEEECSS
T ss_pred eEEEEeCCC
Confidence 999999875
No 213
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.24 E-value=1.9e-09 Score=97.07 Aligned_cols=252 Identities=12% Similarity=0.056 Sum_probs=153.3
Q ss_pred eEEEEEeecCCceeEEEEcCCCCcEEEEEe---------CCCeEEEEeCCCccccccCCCCCceeeeCC-------CCCe
Q 015484 106 VEIAQKIRVDGEVNRARCMPQKPNLVGTKT---------SSCEVYVFDCAKQAEKQQDDCDPDLRLKGH-------DKEG 169 (406)
Q Consensus 106 ~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h-------~~~v 169 (406)
.++...+.-..... ++++|+++.++++.. .++.|.+||..+.. ....+.-. ...-
T Consensus 69 ~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~--------v~~~I~v~~g~r~~~g~~P 139 (386)
T 3sjl_D 69 GRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL--------PTADIELPDAPRFLVGTYP 139 (386)
T ss_dssp TEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--------EEEEEEETTCCCCCBSCCG
T ss_pred CeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe--------EEEEEECCCccccccCCCC
Confidence 34455555433334 999999976555442 36789999998842 23333211 1245
Q ss_pred eEEEecCCCCCeEEEecC--CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCC
Q 015484 170 YGLSWSPFKEGYLVSGSH--DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT 247 (406)
Q Consensus 170 ~~l~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~ 247 (406)
..++++|+|+ +++.+.. ++.|.++|+.+.+....+ .. .+ . ....|.+.+.|++.+.||.+.+.++..
T Consensus 140 ~~~a~spDGk-~lyVan~~~~~~VsVID~~t~~vv~tI------~v-~g-~--~~~~P~g~~~~~~~~~DG~~~~v~~~~ 208 (386)
T 3sjl_D 140 WMTSLTPDGK-TLLFYQFSPAPAVGVVDLEGKAFKRML------DV-PD-C--YHIFPTAPDTFFMHCRDGSLAKVAFGT 208 (386)
T ss_dssp GGEEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEE------EC-CS-E--EEEEEEETTEEEEEETTSCEEEEECCS
T ss_pred ceEEEcCCCC-EEEEEEcCCCCeEEEEECCCCcEEEEE------EC-CC-c--ceeecCCCceeEEECCCCCEEEEECCC
Confidence 6799999998 7666653 689999999987543222 11 11 1 122344667777888899999999976
Q ss_pred -Cccccc----ccccCCCee-EEEec-CCCCcEEEEEeCCCcEEEEeCCCCCCC-cEEec----------CCCCCeEEEE
Q 015484 248 -NQTQQR----VKAHEKEVN-YLSFN-PYNEWVLATASSDTTVALFDMRKMTVP-LHILS----------SHTEEVFQVE 309 (406)
Q Consensus 248 -~~~~~~----~~~~~~~v~-~i~~~-~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~----------~h~~~v~~i~ 309 (406)
++.... +.....++. ...|. ++|. +++ .+.+|.|++.|+...... +..+. ........++
T Consensus 209 ~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~-~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a 286 (386)
T 3sjl_D 209 EGTPEITHTEVFHPEDEFLINHPAYSQKAGR-LVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVA 286 (386)
T ss_dssp SSCCEEEECCCCSCTTSCBCSCCEEETTTTE-EEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEE
T ss_pred CCeEEEeecceeccccccccccceeEcCCCc-EEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceee
Confidence 454221 111112221 23554 5665 434 556899999999764321 11111 0112334577
Q ss_pred EcCCCCCEEEEEeC---------CCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCC-cEEEEEe
Q 015484 310 WDPNHETVLASSAD---------DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDP-WVISSVA 379 (406)
Q Consensus 310 ~~p~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~~l~s~~ 379 (406)
++|+++.++++... .+.|.+.|+.+. +.+..+.- ...+.++.++++++ .++++..
T Consensus 287 ~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~--------------kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~ 351 (386)
T 3sjl_D 287 YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG--------------ERLAKFEM-GHEIDSINVSQDEKPLLYALST 351 (386)
T ss_dssp EETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC--------------CEEEEEEE-EEEECEEEECSSSSCEEEEEET
T ss_pred ECCCCCeEEEEeccccccccCCCCCEEEEEECCCC--------------eEEEEEEC-CCCcceEEECCCCCeEEEEEcC
Confidence 78988865555432 257999999872 33333221 12588999999996 4455556
Q ss_pred CCCcEEEEeCCCccc
Q 015484 380 DDNTVQVWQMTDSIY 394 (406)
Q Consensus 380 ~dg~i~iw~~~~~~~ 394 (406)
.++.|.++|..++..
T Consensus 352 ~~~~VsViD~~t~k~ 366 (386)
T 3sjl_D 352 GDKTLYIHDAESGEE 366 (386)
T ss_dssp TTTEEEEEETTTCCE
T ss_pred CCCeEEEEECCCCcE
Confidence 689999999998865
No 214
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.23 E-value=1.8e-08 Score=91.38 Aligned_cols=233 Identities=11% Similarity=0.074 Sum_probs=141.2
Q ss_pred CCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee------C-CCCCeeEEEecCCCCCeEEEecCC------CeE
Q 015484 125 PQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK------G-HDKEGYGLSWSPFKEGYLVSGSHD------NKI 191 (406)
Q Consensus 125 p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~------~-h~~~v~~l~~~~~~~~~l~s~~~d------g~i 191 (406)
++++.+++.+..++.|+|+|+.+.... .+...++. . ....-..+..+|+| +++++..+ |.|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~----p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPRE----PKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGI 166 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTS----CEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCC----ceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeE
Confidence 778788888999999999999753221 11122221 0 11133456777877 56665555 789
Q ss_pred EEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe-------------------cCCcEEEEECCCCcccc
Q 015484 192 CLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG-------------------DDCQLMIWDLRTNQTQQ 252 (406)
Q Consensus 192 ~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~ 252 (406)
.++|..+.+....+.. -.....--..+-|+| +.+.+++.. .+..|.+||+.+++.+.
T Consensus 167 ~vlD~~T~~v~~~~~~---~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~ 242 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEI---DRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH 242 (462)
T ss_dssp EEECTTTCCEEEECCS---BCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE
T ss_pred EEEECCCCeEEEEEcc---CCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee
Confidence 9999987654322211 001112234677899 556666653 36899999999887777
Q ss_pred ccccc--CCCeeEEEe--cCCCCcEEEEEe-----CCCcEEEEeCCCCCC-CcEE-------ecC-----------CCCC
Q 015484 253 RVKAH--EKEVNYLSF--NPYNEWVLATAS-----SDTTVALFDMRKMTV-PLHI-------LSS-----------HTEE 304 (406)
Q Consensus 253 ~~~~~--~~~v~~i~~--~~~~~~~l~~~~-----~dg~i~vwd~~~~~~-~~~~-------~~~-----------h~~~ 304 (406)
++... ......+.| +|+++..++++. .+++|.+|....+.. ..+. ... -...
T Consensus 243 tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~ 322 (462)
T 2ece_A 243 SLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPL 322 (462)
T ss_dssp EEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCC
T ss_pred EEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCc
Confidence 77542 123344544 999995555555 667887665443210 0000 000 0245
Q ss_pred eEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCC--------------CCCeeeEEeCCC
Q 015484 305 VFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH--------------KAKISDFSWNKN 370 (406)
Q Consensus 305 v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h--------------~~~v~~~~~s~~ 370 (406)
...|.++|+++.+.++.-..+.|.+||+..... ++++....-. ......+.++|+
T Consensus 323 pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~-----------~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpD 391 (462)
T 2ece_A 323 VTDIDISLDDKFLYLSLWGIGEVRQYDISNPFK-----------PVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRD 391 (462)
T ss_dssp CCCEEECTTSCEEEEEETTTTEEEEEECSSTTS-----------CEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTT
T ss_pred eeEEEECCCCCEEEEEeCCCCEEEEEEecCCCC-----------cEEEEEEEeCCeeccccccccccCCCCCCEEEEcCC
Confidence 788999999998777777789999999974221 2233222111 013688999999
Q ss_pred CCcEEEEE
Q 015484 371 DPWVISSV 378 (406)
Q Consensus 371 ~~~~l~s~ 378 (406)
|++++++.
T Consensus 392 Gk~LyVaN 399 (462)
T 2ece_A 392 GRRVYVTN 399 (462)
T ss_dssp SSEEEEEC
T ss_pred CCEEEEEc
Confidence 99655554
No 215
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.22 E-value=3.5e-09 Score=97.50 Aligned_cols=212 Identities=8% Similarity=0.020 Sum_probs=133.6
Q ss_pred CCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC--cEEEEE
Q 015484 167 KEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC--QLMIWD 244 (406)
Q Consensus 167 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg--~i~i~d 244 (406)
.....|+|++++. ++++...++.|++||..++... .+........ ++|+| +++.++++..++ .|.+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~-------~~~~~~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d 200 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVT-------TVHPGFKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYM 200 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEE-------EEEETCCBCB-CEECT-TSSEEEEEBSSTTCEEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEE-------EeeccCCCCc-eeEec-CCCcEEEEecCCCceEEEEE
Confidence 3567999999887 7787777899999999865321 1111122233 89998 566666666655 788998
Q ss_pred CCCCcccccc----cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEe-----cCCCCCe--EEEEEcCC
Q 015484 245 LRTNQTQQRV----KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHIL-----SSHTEEV--FQVEWDPN 313 (406)
Q Consensus 245 ~~~~~~~~~~----~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~~h~~~v--~~i~~~p~ 313 (406)
...+.....+ ......+.+++++|++. .|.++..++.|+.||...... ..+ .++...- ..++|+|+
T Consensus 201 ~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g-~lyv~d~~~~I~~~d~~~~~~--~~~~~~~~~g~~~~~P~~~ia~~p~ 277 (409)
T 3hrp_A 201 KASGWAPTRIGQLGSTFSGKIGAVALDETEE-WLYFVDSNKNFGRFNVKTQEV--TLIKQLELSGSLGTNPGPYLIYYFV 277 (409)
T ss_dssp GGGTTCEEEEEECCTTSCSCCCBCEECTTSS-EEEEECTTCEEEEEETTTCCE--EEEEECCCCSCCCCSSCCEEEEETT
T ss_pred cCCCceeEEeeeccchhcCCcEEEEEeCCCC-eEEEEECCCcEEEEECCCCCE--EEEecccccCCCCCCccccEEEeCC
Confidence 8765443333 21445678899999555 344466788999999986542 222 1222222 39999996
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCee-EEEecCCCCCeeeEEeCCCCCcEEEEEe-CCCcEEEEeCCC
Q 015484 314 HETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPEL-LFSHGGHKAKISDFSWNKNDPWVISSVA-DDNTVQVWQMTD 391 (406)
Q Consensus 314 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~s~~~~~~l~s~~-~dg~i~iw~~~~ 391 (406)
+..++++-..++.|+.|+.... .............. -......-.....++++|+|. ++++-. .++.|+.|++.+
T Consensus 278 ~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~ 354 (409)
T 3hrp_A 278 DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILD 354 (409)
T ss_dssp TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTT
T ss_pred CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCC
Confidence 5567777788899999987641 00000000000000 000001123578999999998 788877 789999999766
Q ss_pred ccc
Q 015484 392 SIY 394 (406)
Q Consensus 392 ~~~ 394 (406)
+.+
T Consensus 355 G~v 357 (409)
T 3hrp_A 355 GYV 357 (409)
T ss_dssp TEE
T ss_pred CEE
Confidence 643
No 216
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.21 E-value=2.6e-09 Score=97.78 Aligned_cols=254 Identities=10% Similarity=0.048 Sum_probs=156.2
Q ss_pred eEEEEEeecCCceeEEEEcCCCCcEEEEEe---------CCCeEEEEeCCCccccccCCCCCceeeeCC-------CCCe
Q 015484 106 VEIAQKIRVDGEVNRARCMPQKPNLVGTKT---------SSCEVYVFDCAKQAEKQQDDCDPDLRLKGH-------DKEG 169 (406)
Q Consensus 106 ~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h-------~~~v 169 (406)
.++...+.-...- .+.++|+++.++++.. .++.|.++|..+.. ....+.-. ....
T Consensus 109 ~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~--------vv~~I~v~g~~r~~~g~~P 179 (426)
T 3c75_H 109 GRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL--------PIADIELPDAPRFLVGTYQ 179 (426)
T ss_dssp TEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--------EEEEEEETTCCCCCBSCCG
T ss_pred CEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc--------EEEEEECCCccccccCCCc
Confidence 4445555544444 8999999976555542 46789999998843 23333211 1234
Q ss_pred eEEEecCCCCCeEEEecC--CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCC
Q 015484 170 YGLSWSPFKEGYLVSGSH--DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT 247 (406)
Q Consensus 170 ~~l~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~ 247 (406)
..++++|+|+ +|+.+.. ++.|.+.|+.+.+....+ .. .. . ....|.+...+++.+.||.+.+.++.+
T Consensus 180 ~~~~~spDGk-~lyV~n~~~~~~VsVID~~t~kvv~~I------~v-~g-~--~~~~p~g~~~~v~~~~dG~~~~V~~~~ 248 (426)
T 3c75_H 180 WMNALTPDNK-NLLFYQFSPAPAVGVVDLEGKTFDRML------DV-PD-C--YHIFPASPTVFYMNCRDGSLARVDFAD 248 (426)
T ss_dssp GGSEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEE------EC-CS-E--EEEEEEETTEEEEEETTSSEEEEECCT
T ss_pred ceEEEcCCCC-EEEEEecCCCCeEEEEECCCCeEEEEE------Ec-CC-c--eeeccCCCcEEEEEcCCCCEEEEECCC
Confidence 6889999998 7777653 689999999986543222 11 11 1 233444557777888889988888865
Q ss_pred Ccccc----cccccCCCe-eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCc-EEec---C-------CCCCeEEEEEc
Q 015484 248 NQTQQ----RVKAHEKEV-NYLSFNPYNEWVLATASSDTTVALFDMRKMTVPL-HILS---S-------HTEEVFQVEWD 311 (406)
Q Consensus 248 ~~~~~----~~~~~~~~v-~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~---~-------h~~~v~~i~~~ 311 (406)
++... .+.....++ ..+.+.+++. .++..+..+.+.+.|+......+ ..+. . .......++++
T Consensus 249 ~~v~~~~~~~~~v~~~p~~~~~~~~~dg~-~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s 327 (426)
T 3c75_H 249 GETKVTNTEVFHTEDELLINHPAFSLRSG-RLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYH 327 (426)
T ss_dssp TCCEEEECCCCSCTTSCBCSCCEECTTTC-EEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEE
T ss_pred CcEEEEeeeeeccCCCceeeEeeecCCCC-EEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEc
Confidence 55431 222112221 2356788888 44445667899999986533100 0000 0 01112236899
Q ss_pred CCCCCEEEEEe---------CCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEe-CC
Q 015484 312 PNHETVLASSA---------DDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVA-DD 381 (406)
Q Consensus 312 p~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~-~d 381 (406)
|+++.++++.. ..+.|.+.|..+. +.+..+... .....+.|+|+++.+++++. .+
T Consensus 328 ~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~--------------kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s 392 (426)
T 3c75_H 328 RQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG--------------ERINKIELG-HEIDSINVSQDAEPLLYALSAGT 392 (426)
T ss_dssp GGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC--------------CEEEEEEEE-EEECEEEECCSSSCEEEEEETTT
T ss_pred CCCCEEEEEecccccccccCCCCEEEEEECCCC--------------eEEEEEECC-CCcCeEEEccCCCEEEEEEcCCC
Confidence 99887666543 1357999999872 333333211 24889999999984455555 69
Q ss_pred CcEEEEeCCCcccC
Q 015484 382 NTVQVWQMTDSIYR 395 (406)
Q Consensus 382 g~i~iw~~~~~~~~ 395 (406)
+.|.++|+.+....
T Consensus 393 ~~VsVID~~t~kvv 406 (426)
T 3c75_H 393 QTLHIYDAATGEEL 406 (426)
T ss_dssp TEEEEEETTTCCEE
T ss_pred CeEEEEECCCCCEE
Confidence 99999999988653
No 217
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.17 E-value=2.4e-09 Score=105.68 Aligned_cols=204 Identities=16% Similarity=0.160 Sum_probs=130.5
Q ss_pred CCCCeeEEEecCCCCCeEEE-----ecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC-
Q 015484 165 HDKEGYGLSWSPFKEGYLVS-----GSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC- 238 (406)
Q Consensus 165 h~~~v~~l~~~~~~~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg- 238 (406)
|...+.+++|||+|+ +|+- |+....|++||+.+++... ..+. ......++|+ ++ +.|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~-~lAy~~~~~G~~~~~i~v~dl~tg~~~~-----~~~~--~~k~~~~~Ws-Dg-~~l~y~~~~~~ 196 (693)
T 3iuj_A 127 GTTALDQLSFSRDGR-ILAYSLSLAGSDWREIHLMDVESKQPLE-----TPLK--DVKFSGISWL-GN-EGFFYSSYDKP 196 (693)
T ss_dssp SCCEEEEEEECTTSS-EEEEEEECSSCCEEEEEEEETTTCSEEE-----EEEE--EEESCCCEEE-TT-TEEEEEESSCC
T ss_pred CcEEEEEEEECCCCC-EEEEEEecCCCceEEEEEEECCCCCCCc-----cccC--CceeccEEEe-CC-CEEEEEEecCc
Confidence 455788899999998 6663 3334579999999875311 0111 1113567899 55 4444555443
Q ss_pred ------------cEEEEECCCCccc----ccccc-cCCCeeEEEecCCCCcEEEEEeCC---CcEEEEeCCCCCCCcEEe
Q 015484 239 ------------QLMIWDLRTNQTQ----QRVKA-HEKEVNYLSFNPYNEWVLATASSD---TTVALFDMRKMTVPLHIL 298 (406)
Q Consensus 239 ------------~i~i~d~~~~~~~----~~~~~-~~~~v~~i~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~ 298 (406)
.|++|++.++... ..... +...+.++.|+|+++.++++.+.+ +.|+++|+.+.......+
T Consensus 197 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 197 DGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp C-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred ccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 4999999876532 22222 344578899999999555555432 489999998765446667
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEeCC---CcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEE
Q 015484 299 SSHTEEVFQVEWDPNHETVLASSADD---RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVI 375 (406)
Q Consensus 299 ~~h~~~v~~i~~~p~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l 375 (406)
..+....... |+++++.+++.+..+ +.|..+|+...... ....+..|...+. .|++++.+++
T Consensus 277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~------------~~~~l~~~~~~~~--~~s~~g~~lv 341 (693)
T 3iuj_A 277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA------------HWRDLIPERQQVL--TVHSGSGYLF 341 (693)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG------------GCEEEECCCSSCE--EEEEETTEEE
T ss_pred eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc------------ccEEEecCCCCEE--EEEEECCEEE
Confidence 6666666665 667777666666554 67899998763211 0112233444444 8889888766
Q ss_pred EEEeCCC--cEEEEeCCCcc
Q 015484 376 SSVADDN--TVQVWQMTDSI 393 (406)
Q Consensus 376 ~s~~~dg--~i~iw~~~~~~ 393 (406)
++...++ .|++|++.++.
T Consensus 342 ~~~~~~g~~~l~~~d~~g~~ 361 (693)
T 3iuj_A 342 AEYMVDATARVEQFDYEGKR 361 (693)
T ss_dssp EEEEETTEEEEEEECTTSCE
T ss_pred EEEEECCeeEEEEEECCCCe
Confidence 6666665 58888887653
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.15 E-value=3.3e-08 Score=88.15 Aligned_cols=199 Identities=12% Similarity=0.102 Sum_probs=128.4
Q ss_pred eeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC
Q 015484 169 GYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN 248 (406)
Q Consensus 169 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~ 248 (406)
..+..|+|++..++++...++.|..||..++.. ..+. ....+.+++|+| +++++++ +.+ .|.+||..++
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~-------~~~~-~~~~v~~i~~~~-dg~l~v~-~~~-gl~~~d~~~g 119 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRK-------TVHA-LPFMGSALAKIS-DSKQLIA-SDD-GLFLRDTATG 119 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-------EEEE-CSSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTC
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE-------EEEE-CCCcceEEEEeC-CCeEEEE-ECC-CEEEEECCCC
Confidence 457899998664777777889999999876532 1111 245789999998 5666654 344 4999999877
Q ss_pred ccccccc----ccCCCeeEEEecCCCCcEEEEEeC------CCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEE
Q 015484 249 QTQQRVK----AHEKEVNYLSFNPYNEWVLATASS------DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVL 318 (406)
Q Consensus 249 ~~~~~~~----~~~~~v~~i~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l 318 (406)
+...... .....++.++++|+|. ++++... .+.|..++ .+. +..+..+......++|+|+++.++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g~--~~~~~~~~~~~~~i~~s~dg~~ly 194 (326)
T 2ghs_A 120 VLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KGK--VTKLFADISIPNSICFSPDGTTGY 194 (326)
T ss_dssp CEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TTE--EEEEEEEESSEEEEEECTTSCEEE
T ss_pred cEEEEeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CCc--EEEeeCCCcccCCeEEcCCCCEEE
Confidence 6432211 1123588999999998 5554432 24566666 322 333333334578999999998656
Q ss_pred EEEeCCCcEEEEeCCC-CC-cccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 319 ASSADDRRLMVWDLNR-IG-DEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 319 ~s~~~dg~i~iwd~~~-~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
++.+.++.|.+||+.. .+ ... .......+......+..++++++|. +.++...++.|.+|+....
T Consensus 195 v~~~~~~~I~~~d~~~~~Gl~~~--------~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~g~ 261 (326)
T 2ghs_A 195 FVDTKVNRLMRVPLDARTGLPTG--------KAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDGN 261 (326)
T ss_dssp EEETTTCEEEEEEBCTTTCCBSS--------CCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTTCC
T ss_pred EEECCCCEEEEEEcccccCCccc--------CceEEEECCCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECCCCC
Confidence 6666788999999851 11 100 0122223333344577899999998 6666666788999998544
No 219
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.13 E-value=4.6e-09 Score=94.54 Aligned_cols=244 Identities=9% Similarity=-0.065 Sum_probs=148.8
Q ss_pred EEEEEeecCCceeEEEEcCCCCcEEEEEe---------CCCeEEEEeCCCccccccCCCCCceeeeCC-------CCCee
Q 015484 107 EIAQKIRVDGEVNRARCMPQKPNLVGTKT---------SSCEVYVFDCAKQAEKQQDDCDPDLRLKGH-------DKEGY 170 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h-------~~~v~ 170 (406)
+++..+.-...- .+.++|+++.+.++.+ .++.|.+||..+. +....+..+ .....
T Consensus 57 ~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~--------~vv~~I~v~~~~~~~~g~~P~ 127 (368)
T 1mda_H 57 VTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF--------LPIADIELPDAPRFSVGPRVH 127 (368)
T ss_dssp EEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC--------CEEEEEEETTSCSCCBSCCTT
T ss_pred eEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC--------CEEEEEECCCccccccCCCcc
Confidence 444455433333 7999999966555442 3688999999984 334454322 12356
Q ss_pred EEEecCCCCCeEEEecC--CCeEEE--EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECC
Q 015484 171 GLSWSPFKEGYLVSGSH--DNKICL--WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR 246 (406)
Q Consensus 171 ~l~~~~~~~~~l~s~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~ 246 (406)
.++++|+|+ +++.+.. +..|.+ +|+.+ ...+ .. .. ++...|.+...+++.+.||.+.+.|+.
T Consensus 128 ~ia~SpDGk-~lyVan~~~~~~v~V~~iD~~t---v~~i------~v-~~---~~~~~p~g~~~~~~~~~dg~~~~vd~~ 193 (368)
T 1mda_H 128 IIGNCASSA-CLLFFLFGSSAAAGLSVPGASD---DQLT------KS-AS---CFHIHPGAAATHYLGSCPASLAASDLA 193 (368)
T ss_dssp SEEECTTSS-CEEEEECSSSCEEEEEETTTEE---EEEE------EC-SS---CCCCEEEETTEEECCCCTTSCEEEECC
T ss_pred eEEEcCCCC-EEEEEccCCCCeEEEEEEchhh---ceEE------EC-CC---ceEEccCCCeEEEEEcCCCCEEEEECc
Confidence 899999999 7776654 467888 88866 1111 11 11 122345566777778889999999988
Q ss_pred C-----Ccccc----cccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCC-cEEecC-------C---CCCeE
Q 015484 247 T-----NQTQQ----RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVP-LHILSS-------H---TEEVF 306 (406)
Q Consensus 247 ~-----~~~~~----~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~-------h---~~~v~ 306 (406)
+ ++... .+.....+. . .+++. .++..+. +.+.+.|+...... +..+.. + .....
T Consensus 194 ~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~-~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~ 267 (368)
T 1mda_H 194 AAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPG-MLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQ 267 (368)
T ss_dssp SSCCCCEECCCCSCTTSCBCSCCE---E-ETTTT-EEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSS
T ss_pred cccccCCeEEEEeeeeeeCCCCcc---c-cccCC-EEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcce
Confidence 6 43321 122223333 3 55565 4444445 89999998653211 111110 0 01112
Q ss_pred EEEEcCCCCCEEEEEe-C-------CCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEE
Q 015484 307 QVEWDPNHETVLASSA-D-------DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSV 378 (406)
Q Consensus 307 ~i~~~p~~~~~l~s~~-~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~ 378 (406)
.+.++|+++.++++.. . ++.+.++|+.+.. .+..+.... ....++|+|+|++++++.
T Consensus 268 ~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~--------------vv~~i~vg~-~p~gi~~s~Dg~~l~va~ 332 (368)
T 1mda_H 268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ--------------TSGPISNGH-DSDAIIAAQDGASDNYAN 332 (368)
T ss_dssp CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC--------------EEECCEEEE-EECEEEECCSSSCEEEEE
T ss_pred eeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe--------------EEEEEECCC-CcceEEECCCCCEEEEEc
Confidence 2689999987665544 2 2356699998732 222222111 488999999998778888
Q ss_pred e-CCCcEEEEeCCCccc
Q 015484 379 A-DDNTVQVWQMTDSIY 394 (406)
Q Consensus 379 ~-~dg~i~iw~~~~~~~ 394 (406)
. .++.|.++|+.+...
T Consensus 333 ~~~~~~VsVID~~t~kv 349 (368)
T 1mda_H 333 SAGTEVLDIYDAASDQD 349 (368)
T ss_dssp ETTTTEEEEEESSSCEE
T ss_pred cCCCCeEEEEECCCCcE
Confidence 8 699999999998754
No 220
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.05 E-value=1.7e-07 Score=85.00 Aligned_cols=232 Identities=8% Similarity=-0.047 Sum_probs=133.7
Q ss_pred eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec----------CCCeEEEEeCCCccCCceeeee
Q 015484 139 EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS----------HDNKICLWDVSALAQDKVIDAM 208 (406)
Q Consensus 139 ~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~ 208 (406)
.|.++|..+.. ....+.....+ .++++|+++ +++.+. .++.|.+||..+.+....+...
T Consensus 48 ~v~v~D~~t~~--------~~~~i~~g~~p--~i~~spDg~-~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~ 116 (373)
T 2mad_H 48 QQWVLDAGSGS--------ILGHVNGGFLP--NPVAAHSGS-EFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELP 116 (373)
T ss_pred EEEEEECCCCe--------EEEEecCCCCC--CeEECCCCC-EEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECC
Confidence 78999998732 23444433333 999999998 776664 3678999999875433222110
Q ss_pred --eeeeccCccEEEEEeeCCCCCEEEEEe-c-CCcEEEEECCCCccccc-ccccCCCeeEEEecCCCCcEEEEEeCCCcE
Q 015484 209 --HVYEAHESVVEDVSWHLKNENLFGSAG-D-DCQLMIWDLRTNQTQQR-VKAHEKEVNYLSFNPYNEWVLATASSDTTV 283 (406)
Q Consensus 209 --~~~~~~~~~i~~i~~~p~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i 283 (406)
.... +......+.|+| ++++++++. . ++.|.++| .+++.+.. +... . ++.+.|.+...+++.+.||.+
T Consensus 117 ~~~~~~-~g~~p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~ 189 (373)
T 2mad_H 117 DAPRFD-VGPYSWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGL 189 (373)
T ss_pred Cccccc-cCCCccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCE
Confidence 0000 012345789999 455555555 3 57899999 99887766 5422 1 245567666577788889999
Q ss_pred EEEeCCCCCCCcEEec-----CCCCC-eEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccc-ccccCCCCeeEEEec
Q 015484 284 ALFDMRKMTVPLHILS-----SHTEE-VFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE-LDAEDGPPELLFSHG 356 (406)
Q Consensus 284 ~vwd~~~~~~~~~~~~-----~h~~~-v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~ 356 (406)
.++|. .++. ..... ....+ .....+.+++..+++.. ..+.+.+.|+......... ........ ... .
T Consensus 190 ~~vd~-~g~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~-~~~--~ 263 (373)
T 2mad_H 190 AKTDH-AGGA-AGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGR-KAD--T 263 (373)
T ss_pred EEEEC-CCcE-EEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCcc-ccc--c
Confidence 99999 6543 21111 11122 23345666665544444 6789999998652211000 00000000 000 0
Q ss_pred CCCCCeeeEEeCCCCCcEEEEEe---------CCCcEEEEeCCCccc
Q 015484 357 GHKAKISDFSWNKNDPWVISSVA---------DDNTVQVWQMTDSIY 394 (406)
Q Consensus 357 ~h~~~v~~~~~s~~~~~~l~s~~---------~dg~i~iw~~~~~~~ 394 (406)
-.......+.++|+++.++++.. .++.|.++|+.+...
T Consensus 264 ~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v 310 (373)
T 2mad_H 264 WRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT 310 (373)
T ss_pred eecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEE
Confidence 01122344788999885555443 135799999987654
No 221
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.02 E-value=7.2e-07 Score=76.90 Aligned_cols=230 Identities=9% Similarity=-0.024 Sum_probs=140.5
Q ss_pred CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCcc
Q 015484 138 CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESV 217 (406)
Q Consensus 138 g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 217 (406)
+.|+.+++....... ......+........+++|++.+..++++-..++.|..+++...... .........
T Consensus 10 ~~I~~~~~~g~~~~~---~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~------~~~~~~~~~ 80 (267)
T 1npe_A 10 GKIERLPLERNTMKK---TEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT------TIIRQDLGS 80 (267)
T ss_dssp EEEEEEEESSSCBCG---GGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE------EEECTTCCC
T ss_pred CeEEEEEecCccccc---ccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE------EEEECCCCC
Confidence 468888887632110 00011122122456799999976635556666789999998754321 111122246
Q ss_pred EEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeC--CCcEEEEeCCCCCCCc
Q 015484 218 VEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS--DTTVALFDMRKMTVPL 295 (406)
Q Consensus 218 i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~ 295 (406)
...++++|.++.++++-...+.|.++++..................++++|++..++++... .+.|..+++..... .
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~ 159 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-R 159 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-E
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-E
Confidence 78899998667777777778899999987543222222222456899999976635554433 46888888764322 1
Q ss_pred EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEE
Q 015484 296 HILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVI 375 (406)
Q Consensus 296 ~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l 375 (406)
......-.....++++|+++.++++-...+.|.++|+.... ......+ ......++.. +.+++
T Consensus 160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~--------------~~~~~~~-~~~P~gi~~d--~~~ly 222 (267)
T 1npe_A 160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG--------------RRKVLEG-LQYPFAVTSY--GKNLY 222 (267)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE--------------EEEEEEC-CCSEEEEEEE--TTEEE
T ss_pred EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc--------------eEEEecC-CCCceEEEEe--CCEEE
Confidence 12222335689999999887777777778899999986411 1111111 2234566654 34466
Q ss_pred EEEeCCCcEEEEeCCCccc
Q 015484 376 SSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 376 ~s~~~dg~i~iw~~~~~~~ 394 (406)
++....+.|.+++..++..
T Consensus 223 va~~~~~~v~~~d~~~g~~ 241 (267)
T 1npe_A 223 YTDWKTNSVIAMDLAISKE 241 (267)
T ss_dssp EEETTTTEEEEEETTTTEE
T ss_pred EEECCCCeEEEEeCCCCCc
Confidence 6666678999999987643
No 222
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.01 E-value=2e-08 Score=90.35 Aligned_cols=216 Identities=13% Similarity=0.072 Sum_probs=128.6
Q ss_pred CCeeEEEecCCCCCeEEEec--CCCeEEEEeCCCccCCceeeee-eeeeccCccEEEEEeeCCCCCEEEEEec-----CC
Q 015484 167 KEGYGLSWSPFKEGYLVSGS--HDNKICLWDVSALAQDKVIDAM-HVYEAHESVVEDVSWHLKNENLFGSAGD-----DC 238 (406)
Q Consensus 167 ~~v~~l~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~i~~i~~~p~~~~~l~~~~~-----dg 238 (406)
.....++++++|+ ++++.. .++.++||.+..+.. ..+... .....+-..+..+++++ +++++++-.. ++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~-~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDG-NGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECS-SSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcC-CCcEEEEcCCCCcCCCC
Confidence 5788999999988 777753 234355665543211 111000 01123446789999998 4666665443 57
Q ss_pred cEEEEECCCCcccccccc------cCCCeeEEEecCCCCcEEEEEe---CCCcEEEEeCCCCCCCcEEecCC--------
Q 015484 239 QLMIWDLRTNQTQQRVKA------HEKEVNYLSFNPYNEWVLATAS---SDTTVALFDMRKMTVPLHILSSH-------- 301 (406)
Q Consensus 239 ~i~i~d~~~~~~~~~~~~------~~~~v~~i~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~h-------- 301 (406)
.|.+||+.+++.+..+.. +...+..++++|++..++++.. .++.|.+||+.++.. ...+..|
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~-~r~~~~~~~~~~~~~ 172 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA-ARVLQGYPGIAPEDI 172 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE-EEECTTCTTTSCCSC
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE-EEEecCCCccccccc
Confidence 899999998886555432 2245689999987654556655 578999999876442 2222221
Q ss_pred ---------------------CCCeEEEEEcCCCCCEEEEEeCCC-cEEEEeCCCCCcccccccccCCCCeeEEEecCCC
Q 015484 302 ---------------------TEEVFQVEWDPNHETVLASSADDR-RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHK 359 (406)
Q Consensus 302 ---------------------~~~v~~i~~~p~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 359 (406)
...+..|+|+|+++. |+.+..++ .+..++............... ... ...++.
T Consensus 173 ~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~-ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~--~~~g~~ 247 (343)
T 2qe8_A 173 DLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEW-LYLSPMHSTSMYRIKSADLSNLQLTDAELG--SKI--ERYSEK 247 (343)
T ss_dssp CCEETTEECBEECTTSCEECCCCCEEEEEECTTSCE-EEEEESSCSEEEEEEHHHHTCTTCCHHHHH--TTC--EEEEEC
T ss_pred ceeECCEEEEeccCCCceeceecccceeEeccCCCE-EEEEeCCCCeEEEEEHHHhcCCCCChhhhh--cce--EecccC
Confidence 123688999999975 55555554 454444321000000000000 000 111233
Q ss_pred CCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 360 AKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 360 ~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.....++++++|. ++++...++.|.+|+..++
T Consensus 248 g~pdgia~d~~G~-l~va~~~~~~V~~~d~~~G 279 (343)
T 2qe8_A 248 PICDGISIDKDHN-IYVGDLAHSAIGVITSADR 279 (343)
T ss_dssp CSCSCEEECTTCC-EEEEEGGGTEEEEEETTTT
T ss_pred CCCceEEECCCCC-EEEEccCCCeEEEEECCCC
Confidence 4567899999998 7888888899999999444
No 223
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.99 E-value=1.3e-07 Score=83.40 Aligned_cols=206 Identities=12% Similarity=0.075 Sum_probs=131.9
Q ss_pred ceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC
Q 015484 159 DLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC 238 (406)
Q Consensus 159 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg 238 (406)
...+........+..|+++++.+++++..++.|..|+.. +. ...+..+...+..+++++ +++++++...++
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-------~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~ 107 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-------VDVLLDATAFTNGNAVDA-QQRLVHCEHGRR 107 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-------EEEEEESCSCEEEEEECT-TSCEEEEETTTT
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-------EEEEeCCCCccceeeECC-CCCEEEEECCCC
Confidence 444555566678999999887567788888999999873 32 122334556789999998 567776655668
Q ss_pred cEEEEECCCCccccccc---c-cCCCeeEEEecCCCCcEEEE----EeC-------------CCcEEEEeCCCCCCCcEE
Q 015484 239 QLMIWDLRTNQTQQRVK---A-HEKEVNYLSFNPYNEWVLAT----ASS-------------DTTVALFDMRKMTVPLHI 297 (406)
Q Consensus 239 ~i~i~d~~~~~~~~~~~---~-~~~~v~~i~~~~~~~~~l~~----~~~-------------dg~i~vwd~~~~~~~~~~ 297 (406)
.|.+|+.. ++...... . ....++.++++|+|. ++++ |.. .+.|..||..++.. ..
T Consensus 108 ~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~--~~ 183 (305)
T 3dr2_A 108 AITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL--QR 183 (305)
T ss_dssp EEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC--EE
T ss_pred EEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE--EE
Confidence 89999976 44321111 1 123467899999998 6665 332 24677787765443 22
Q ss_pred ecCCCCCeEEEEEcCCCCCEEEEEeCC------CcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCC
Q 015484 298 LSSHTEEVFQVEWDPNHETVLASSADD------RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKND 371 (406)
Q Consensus 298 ~~~h~~~v~~i~~~p~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~ 371 (406)
+. .....+.++|+|+++. |+.+... +.|.+|++.... ... ..... .........++++++|
T Consensus 184 ~~-~~~~p~gl~~spdg~~-lyv~~~~~~~~~~~~i~~~~~~~~~--l~~-------~~~~~--~~~~~~pdgi~~d~~G 250 (305)
T 3dr2_A 184 MA-DLDHPNGLAFSPDEQT-LYVSQTPEQGHGSVEITAFAWRDGA--LHD-------RRHFA--SVPDGLPDGFCVDRGG 250 (305)
T ss_dssp EE-EESSEEEEEECTTSSE-EEEEECCC---CCCEEEEEEEETTE--EEE-------EEEEE--CCSSSCCCSEEECTTS
T ss_pred Ee-cCCCCcceEEcCCCCE-EEEEecCCcCCCCCEEEEEEecCCC--ccC-------CeEEE--ECCCCCCCeEEECCCC
Confidence 22 3456789999999985 4444443 789999986421 000 01111 1123446789999999
Q ss_pred CcEEEEEeCCCcEEEEeCCCcc
Q 015484 372 PWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 372 ~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
. +.++. .+ .|.+|+.....
T Consensus 251 ~-lwv~~-~~-gv~~~~~~g~~ 269 (305)
T 3dr2_A 251 W-LWSSS-GT-GVCVFDSDGQL 269 (305)
T ss_dssp C-EEECC-SS-EEEEECTTSCE
T ss_pred C-EEEec-CC-cEEEECCCCCE
Confidence 8 55544 44 49999986553
No 224
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.99 E-value=1.5e-06 Score=74.85 Aligned_cols=224 Identities=8% Similarity=0.041 Sum_probs=140.3
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
..+..++|.|++..++++-...+.|.+++..... .............++++++.+..++++-...+.|.+++
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~--------~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~ 107 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE--------PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAK 107 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC--------CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC--------cEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEE
Confidence 3578999999776777777778899999987621 11222222246789999987663555656678999999
Q ss_pred CCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec--CCcEEEEECCCCcccccc-cccCCCeeEEEecCCCCc
Q 015484 196 VSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD--DCQLMIWDLRTNQTQQRV-KAHEKEVNYLSFNPYNEW 272 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~-~~~~~~v~~i~~~~~~~~ 272 (406)
++.... ..+ ..........++++|.++.++++... .+.|..+++.... ...+ .........++++|++..
T Consensus 108 ~~g~~~-~~~-----~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~ 180 (267)
T 1npe_A 108 MDGTQR-RVL-----FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQ 180 (267)
T ss_dssp TTSCSC-EEE-----ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTE
T ss_pred cCCCCE-EEE-----EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCE
Confidence 864321 111 11112457889999865666655543 4688888876432 2222 122345788999998775
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeE
Q 015484 273 VLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELL 352 (406)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (406)
++++-...+.|.++|+..... ..... .......++.. +..++++....+.|.++|..+ .+.+
T Consensus 181 lyv~d~~~~~I~~~~~~g~~~-~~~~~-~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~--------------g~~~ 242 (267)
T 1npe_A 181 LCWVDAGTHRAECLNPAQPGR-RKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAI--------------SKEM 242 (267)
T ss_dssp EEEEETTTTEEEEEETTEEEE-EEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTT--------------TEEE
T ss_pred EEEEECCCCEEEEEecCCCce-EEEec-CCCCceEEEEe--CCEEEEEECCCCeEEEEeCCC--------------CCce
Confidence 666666678999999875321 22222 22345677664 445666666778999999875 2333
Q ss_pred EEecCC-CCCeeeEEeCCCCC
Q 015484 353 FSHGGH-KAKISDFSWNKNDP 372 (406)
Q Consensus 353 ~~~~~h-~~~v~~~~~s~~~~ 372 (406)
..+... ......+++.|++.
T Consensus 243 ~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 243 DTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEECCSSCCCCCCEEEECSCC
T ss_pred EEEccccccccceeeecCccC
Confidence 333322 22366777777653
No 225
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.96 E-value=7e-10 Score=100.82 Aligned_cols=179 Identities=11% Similarity=0.029 Sum_probs=94.0
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeee
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAM 208 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 208 (406)
..+++++.||.|+.||..++.. ...+.. ..+.+..+..++. .+++++.||.|..||..+++....+.
T Consensus 10 ~~v~~gs~dg~v~a~d~~tG~~--------~W~~~~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~-- 76 (369)
T 2hz6_A 10 TLLFVSTLDGSLHAVSKRTGSI--------KWTLKE--DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLTKLP-- 76 (369)
T ss_dssp TEEEEEETTSEEEEEETTTCCE--------EEEEEC--CCSCCCC-----C-CEEECTTTCCEEEC-----CCSEECS--
T ss_pred CEEEEEcCCCEEEEEECCCCCE--------EEEecC--CCceecceEcCCC-EEEEeCCCCEEEEEECCCCceeeeee--
Confidence 4788899999999999987433 344443 3455555555565 78888899999999998875432221
Q ss_pred eeeeccC-ccEE-EEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEE
Q 015484 209 HVYEAHE-SVVE-DVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALF 286 (406)
Q Consensus 209 ~~~~~~~-~~i~-~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vw 286 (406)
.+. ..+. +..+. .+..+++++.++.|+.||.++++.+..+..+. ...++|.+. .+++++.++.|+.|
T Consensus 77 ----~~~~~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~-~v~~~~~dg~v~a~ 145 (369)
T 2hz6_A 77 ----FTIPELVQASPCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTS-LLYLGRTEYTITMY 145 (369)
T ss_dssp ----CCHHHHHTTCSCC-------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECC
T ss_pred ----ccCccccccCceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCC-EEEEEecCCEEEEE
Confidence 111 1111 01111 24456678889999999999999877765433 234566666 78888889999999
Q ss_pred eCCCCCCCcEEecCCCCCeEEEEEcCCC---CCEEEEEeCCCcEEEEeCCCC
Q 015484 287 DMRKMTVPLHILSSHTEEVFQVEWDPNH---ETVLASSADDRRLMVWDLNRI 335 (406)
Q Consensus 287 d~~~~~~~~~~~~~h~~~v~~i~~~p~~---~~~l~s~~~dg~i~iwd~~~~ 335 (406)
|.++++. +..+..+. .....+.++. .. +++++.||.|..||..+.
T Consensus 146 d~~tG~~-~W~~~~~~--~~~~~~~~~~~~~~~-v~~~~~dg~v~a~d~~tG 193 (369)
T 2hz6_A 146 DTKTREL-RWNATYFD--YAASLPEDDVDYKMS-HFVSNGDGLVVTVDSESG 193 (369)
T ss_dssp CSSSSSC-CCEEEEEE--ECCBCCCCCTTCCCC-EEEEETSCEEEEECTTTC
T ss_pred ECCCCCE-EEeEeccc--ccCccccCCccccce-EEEECCCCEEEEEECCCC
Confidence 9998765 33322111 1122333321 33 667888999999999874
No 226
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.93 E-value=8e-09 Score=96.95 Aligned_cols=245 Identities=11% Similarity=0.089 Sum_probs=151.0
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee-CCCCCeeEEEe-c-CCCCCeEEEec----------------
Q 015484 126 QKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK-GHDKEGYGLSW-S-PFKEGYLVSGS---------------- 186 (406)
Q Consensus 126 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~-~-~~~~~~l~s~~---------------- 186 (406)
+|+.++++...++.|.+.|+...+. ...+. ........+++ + |+++ ++++++
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~--------~~ii~ip~g~~phg~~~~~~p~~~-~v~~~~~~~~p~~~dg~~l~~~ 170 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKC--------DAILEIPNAKGIHGLRPQKWPRSN-YVFCNGEDETPLVNDGTNMEDV 170 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEE--------EEEEECSSCCSEEEEEECCSSBCS-EEEEEECSCEESSCSSSSTTCG
T ss_pred CCCEEEEEcCCCCEEEEEECCCceE--------eeEEeCCCCCCCcceeeeecCCCc-EEEEecccccccCCCCcccccc
Confidence 7766677666778899999998432 22222 12345778887 4 7887 777773
Q ss_pred --CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC---------------------------
Q 015484 187 --HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD--------------------------- 237 (406)
Q Consensus 187 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d--------------------------- 237 (406)
.++.+.+.|..+.+...+ +.-. +....++++|+ ++++++.+.+
T Consensus 171 ~~~~~~vtvID~~t~~v~~q------I~Vg-g~pd~~~~spd-Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~ 242 (595)
T 1fwx_A 171 ANYVNVFTAVDADKWEVAWQ------VLVS-GNLDNCDADYE-GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE 242 (595)
T ss_dssp GGEEEEEEEEETTTTEEEEE------EEES-SCCCCEEECSS-SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred cccCceEEEEECCCCeEEEE------EEeC-CCccceEECCC-CCEEEEEecCcccCcchhhccccccceEEEeecccee
Confidence 356789999887533221 1111 13455667874 4444444422
Q ss_pred -----------CcEEEEECCC--Ccc-cccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC-----------
Q 015484 238 -----------CQLMIWDLRT--NQT-QQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT----------- 292 (406)
Q Consensus 238 -----------g~i~i~d~~~--~~~-~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~----------- 292 (406)
+.|.+.|.++ ++. +..+.. .....++.++|+|+++++++..+.+|.++|+.+..
T Consensus 243 ~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~ 321 (595)
T 1fwx_A 243 KAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS 321 (595)
T ss_dssp HHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred EeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence 2477778776 433 334432 23457899999999777777778899999998642
Q ss_pred CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCC-----CeeeEEe
Q 015484 293 VPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKA-----KISDFSW 367 (406)
Q Consensus 293 ~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~ 367 (406)
..+.... -......++|+|+| +..++...|+.|.+||+........ .+.....+.....|.. .-..+..
T Consensus 322 ~v~~~v~-vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~----g~~~~~vi~kidV~yqpGh~~~~~g~t~ 395 (595)
T 1fwx_A 322 AVVAEPE-LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYA----GEKVDPIKDKLDVHYQPGHLKTVMGETL 395 (595)
T ss_dssp GEEECCB-CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHH----TCSCCCEEEEEECSSCEEEEEETTTTST
T ss_pred ceEEEcC-CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhc----ccccceeEEEeecccccccceeccceEe
Confidence 1122222 23568999999999 6777888999999999875111000 0001234444444432 2245577
Q ss_pred CCCCCcEEEEEeCC-CcE-----------EEEeCCCccc
Q 015484 368 NKNDPWVISSVADD-NTV-----------QVWQMTDSIY 394 (406)
Q Consensus 368 s~~~~~~l~s~~~d-g~i-----------~iw~~~~~~~ 394 (406)
+|+|+|++++.... ..+ +++|++++.+
T Consensus 396 ~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 396 DATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp TCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred CCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 99999766555433 234 8899976654
No 227
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.92 E-value=2.2e-07 Score=84.37 Aligned_cols=213 Identities=15% Similarity=0.179 Sum_probs=133.1
Q ss_pred EEEec--CCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeee------c-cCccEEEEEeeCCCCCEEEEEecC----
Q 015484 171 GLSWS--PFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYE------A-HESVVEDVSWHLKNENLFGSAGDD---- 237 (406)
Q Consensus 171 ~l~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~------~-~~~~i~~i~~~p~~~~~l~~~~~d---- 237 (406)
+..++ ++++.++++|..+++|.++|+.+...... ....+. . .......+...| ++ +++++..+
T Consensus 86 ~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~--~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~ 161 (462)
T 2ece_A 86 CPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPK--IIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGE 161 (462)
T ss_dssp STTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCE--EEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSC
T ss_pred ccccCCCccCCEEEEccCCCCeEEEEECCCCCCCce--eeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCC
Confidence 33446 67775677788899999999975432211 122221 1 112445667788 44 77666555
Q ss_pred --CcEEEEECCCCcccccccccC---CCeeEEEecCCCCcEEEEEe-------------------CCCcEEEEeCCCCCC
Q 015484 238 --CQLMIWDLRTNQTQQRVKAHE---KEVNYLSFNPYNEWVLATAS-------------------SDTTVALFDMRKMTV 293 (406)
Q Consensus 238 --g~i~i~d~~~~~~~~~~~~~~---~~v~~i~~~~~~~~~l~~~~-------------------~dg~i~vwd~~~~~~ 293 (406)
|.|.++|.++.+.+.++.... ..-..+.|+|+++ .+++.. ...+|.+||+.+.+
T Consensus 162 ~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k- 239 (462)
T 2ece_A 162 GPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK- 239 (462)
T ss_dssp SCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE-
T ss_pred CCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCC-EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc-
Confidence 789999999999888775322 2234588899998 666664 35799999998753
Q ss_pred CcEEecCC-C-CCeEEEEE--cCCCCCEEEEEe-----CCCcEEEEeCCCCCcccccccccCCCCe-eEEEe-------c
Q 015484 294 PLHILSSH-T-EEVFQVEW--DPNHETVLASSA-----DDRRLMVWDLNRIGDEQLELDAEDGPPE-LLFSH-------G 356 (406)
Q Consensus 294 ~~~~~~~h-~-~~v~~i~~--~p~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~-------~ 356 (406)
.+.++... . .....+.| +|++++.++++- .+++|.+|.... +..... ..-+.+.. ....+ .
T Consensus 240 ~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-g~~~~~-~vIdi~~~~v~~~lp~~~~~f~ 317 (462)
T 2ece_A 240 RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED-GKWNAE-KVIEIPAEPLEGNLPEILKPFK 317 (462)
T ss_dssp EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET-TEEEEE-EEEEECCEECCSSCCGGGGGGT
T ss_pred EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC-CceeEE-EEEeCCCccccccccccccccc
Confidence 35555542 1 23455656 999987666666 788998887653 211000 00000000 00000 0
Q ss_pred CCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 357 GHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 357 ~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
+-......+.+|++|+++.++.-..+.|.+|++.+
T Consensus 318 ~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 318 AVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp EECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred cCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 00235789999999998888877789999999863
No 228
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.92 E-value=4.9e-07 Score=77.02 Aligned_cols=207 Identities=15% Similarity=0.105 Sum_probs=138.9
Q ss_pred CeEEEEEeecCCc--eeEEEEcCCCCcEEEEEeC--CCeEEEEeCCCccccccCCCCCceeeeC-CCCCeeEEEecCCCC
Q 015484 105 KVEIAQKIRVDGE--VNRARCMPQKPNLVGTKTS--SCEVYVFDCAKQAEKQQDDCDPDLRLKG-HDKEGYGLSWSPFKE 179 (406)
Q Consensus 105 ~~~~~~~~~h~~~--v~~i~~~p~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~ 179 (406)
..+++..+.|... ...+.|+|++ .+.++.+. ++.|+++|..+... ...+.- .......+++. +.
T Consensus 8 ~~~vv~~~p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v--------~~~i~l~~~~fgeGi~~~--g~ 76 (266)
T 2iwa_A 8 IVEVLNEFPHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKV--------ENIHKMDDSYFGEGLTLL--NE 76 (266)
T ss_dssp EEEEEEEEECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCE--------EEEEECCTTCCEEEEEEE--TT
T ss_pred CceEEEEEECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCE--------EEEEecCCCcceEEEEEe--CC
Confidence 4677888899865 5799999986 55555443 67999999998433 333321 11122355555 44
Q ss_pred CeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccC-
Q 015484 180 GYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHE- 258 (406)
Q Consensus 180 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~- 258 (406)
...++.-.++.+.++|..+.+... .+...... ...+++++..++++ ..++.|.++|..+.+.+..+....
T Consensus 77 ~lyv~t~~~~~v~viD~~t~~v~~------~i~~g~~~--g~glt~Dg~~l~vs-~gs~~l~viD~~t~~v~~~I~Vg~~ 147 (266)
T 2iwa_A 77 KLYQVVWLKNIGFIYDRRTLSNIK------NFTHQMKD--GWGLATDGKILYGS-DGTSILYEIDPHTFKLIKKHNVKYN 147 (266)
T ss_dssp EEEEEETTCSEEEEEETTTTEEEE------EEECCSSS--CCEEEECSSSEEEE-CSSSEEEEECTTTCCEEEEEECEET
T ss_pred EEEEEEecCCEEEEEECCCCcEEE------EEECCCCC--eEEEEECCCEEEEE-CCCCeEEEEECCCCcEEEEEEECCC
Confidence 355666678999999998764332 22211011 12344545666655 468899999999988777764221
Q ss_pred ----CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCC-------------CCCeEEEEEcCCCCCEEEEE
Q 015484 259 ----KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSH-------------TEEVFQVEWDPNHETVLASS 321 (406)
Q Consensus 259 ----~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h-------------~~~v~~i~~~p~~~~~l~s~ 321 (406)
..++.+.|. ++. +++....++.|.+.|..+++. +..+... ....+.|+|+|+++.+++++
T Consensus 148 ~~p~~~~nele~~-dg~-lyvn~~~~~~V~vID~~tg~V-~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg 224 (266)
T 2iwa_A 148 GHRVIRLNELEYI-NGE-VWANIWQTDCIARISAKDGTL-LGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG 224 (266)
T ss_dssp TEECCCEEEEEEE-TTE-EEEEETTSSEEEEEETTTCCE-EEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred CcccccceeEEEE-CCE-EEEecCCCCeEEEEECCCCcE-EEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC
Confidence 246778888 564 666665678999999998765 5554421 13579999999998899999
Q ss_pred eCCCcEEEEeCCC
Q 015484 322 ADDRRLMVWDLNR 334 (406)
Q Consensus 322 ~~dg~i~iwd~~~ 334 (406)
...+.+.+.++..
T Consensus 225 k~~~~v~~i~l~~ 237 (266)
T 2iwa_A 225 KLWPKLFEIKLHL 237 (266)
T ss_dssp TTCSEEEEEEEEE
T ss_pred CCCCeEEEEEEec
Confidence 9999999998875
No 229
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.91 E-value=2.9e-07 Score=81.88 Aligned_cols=218 Identities=9% Similarity=0.005 Sum_probs=137.1
Q ss_pred EEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeee
Q 015484 130 LVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMH 209 (406)
Q Consensus 130 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 209 (406)
.+..++.++.|..+|.. ... ......+...+.++...+++ .|..++.++.|..+|.. +... .
T Consensus 109 ~l~v~t~~~~l~~~d~~-g~~--------~~~~~~~~~~~~~~~~~~~g--~l~vgt~~~~l~~~d~~-g~~~------~ 170 (330)
T 3hxj_A 109 ILYVTSMDGHLYAINTD-GTE--------KWRFKTKKAIYATPIVSEDG--TIYVGSNDNYLYAINPD-GTEK------W 170 (330)
T ss_dssp EEEEECTTSEEEEECTT-SCE--------EEEEECSSCCCSCCEECTTS--CEEEECTTSEEEEECTT-SCEE------E
T ss_pred EEEEEecCCEEEEEcCC-CCE--------EEEEcCCCceeeeeEEcCCC--EEEEEcCCCEEEEECCC-CCEe------E
Confidence 46777888889999887 321 22333344445666666555 47778788999999987 4321 1
Q ss_pred eeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCC
Q 015484 210 VYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMR 289 (406)
Q Consensus 210 ~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~ 289 (406)
.+......+.++...+ ++.++ .++ +.|..+| .+++...........+.++...+++. |..++.++.|..+|..
T Consensus 171 ~~~~~~~~~~~~~~d~-~g~l~-v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~--l~v~t~~~gl~~~~~~ 243 (330)
T 3hxj_A 171 RFKTNDAITSAASIGK-DGTIY-FGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT--IYVTSLDGHLYAINPD 243 (330)
T ss_dssp EEECSSCCCSCCEECT-TCCEE-EES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC--EEEEETTTEEEEECTT
T ss_pred EEecCCCceeeeEEcC-CCEEE-EEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe--EEEEcCCCeEEEECCC
Confidence 2222344566666655 45555 444 7899999 67766555554556688888888876 5567777888888743
Q ss_pred CCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCC
Q 015484 290 KMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNK 369 (406)
Q Consensus 290 ~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 369 (406)
+.. +..+......+..+...+++. |..++.+|.|..+|... ..+..+......+.++...+
T Consensus 244 -g~~-~~~~~~~~~~~~~~~~~~~g~--l~v~t~~ggl~~~d~~g---------------~~~~~~~~~~~~~~~~~~d~ 304 (330)
T 3hxj_A 244 -GTE-KWRFKTGKRIESSPVIGNTDT--IYFGSYDGHLYAINPDG---------------TEKWNFETGSWIIATPVIDE 304 (330)
T ss_dssp -SCE-EEEEECSSCCCSCCEECTTSC--EEEECTTCEEEEECTTS---------------CEEEEEECSSCCCSCCEECT
T ss_pred -CCE-eEEeeCCCCccccceEcCCCe--EEEecCCCCEEEECCCC---------------cEEEEEEcCCccccceEEcC
Confidence 232 444444344445566666664 67788888999998532 22223333345677888888
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 370 NDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 370 ~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
++. |..++.+|.+++.......
T Consensus 305 ~g~--l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 305 NGT--IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp TCC--EEEECTTSCEEEEEC----
T ss_pred CCE--EEEEcCCCeEEEEeccccc
Confidence 887 4557889999988766544
No 230
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.88 E-value=2.1e-07 Score=83.74 Aligned_cols=248 Identities=10% Similarity=0.019 Sum_probs=141.7
Q ss_pred EEcCCCCcEEEEEeC----CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec----------C
Q 015484 122 RCMPQKPNLVGTKTS----SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS----------H 187 (406)
Q Consensus 122 ~~~p~~~~~l~~~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~----------~ 187 (406)
...|++..++++-.. ++.|.+.|..+.. .+..+.....+ .++++|+++ +++.++ .
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~--------v~~~I~vG~~P--~va~spDG~-~lyVan~~~~r~~~G~~ 107 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGR--------VIGMIDGGFLP--NPVVADDGS-FIAHASTVFSRIARGER 107 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTE--------EEEEEEECSSC--EEEECTTSS-CEEEEEEEEEETTEEEE
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCe--------EEEEEECCCCC--cEEECCCCC-EEEEEcccccccccCCC
Confidence 345777555555443 6799999998742 24455544444 499999999 665554 3
Q ss_pred CCeEEEEeCCCccCCceeeeee-eeeccCccEEEEEeeCCCCCEEEEEe-c-CCcEEEEECCCCcccccccccCCCeeEE
Q 015484 188 DNKICLWDVSALAQDKVIDAMH-VYEAHESVVEDVSWHLKNENLFGSAG-D-DCQLMIWDLRTNQTQQRVKAHEKEVNYL 264 (406)
Q Consensus 188 dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~i~~i~~~p~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~~~~~~~v~~i 264 (406)
++.|.+||..+.+....+..-. ...........+.|+|+ ++.++++. . ++.|.++|+.+++.+.++.... +.
T Consensus 108 ~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spD-Gk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~~ 182 (386)
T 3sjl_D 108 TDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPD-GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----CY 182 (386)
T ss_dssp EEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTT-SSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EE
T ss_pred CCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCC-CCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----cc
Confidence 6789999998865332221100 00000124567899995 55555554 3 6899999999999888774322 12
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCC----CCCeE-EEEEc-CCCCCEEEEEeCCCcEEEEeCCCCCcc
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSH----TEEVF-QVEWD-PNHETVLASSADDRRLMVWDLNRIGDE 338 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h----~~~v~-~i~~~-p~~~~~l~s~~~dg~i~iwd~~~~~~~ 338 (406)
...|.+...+++.+.||.+.+.++............+ ..++. ...|. ++|+ ++ -.+.+|.|.+.|+......
T Consensus 183 ~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~-~~-~vs~~g~V~v~d~~~~~~~ 260 (386)
T 3sjl_D 183 HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR-LV-WPTYTGKIHQIDLSSGDAK 260 (386)
T ss_dssp EEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTE-EE-EEBTTSEEEEEECTTSSCE
T ss_pred eeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCc-EE-EEeCCCEEEEEECCCCcce
Confidence 2234444467788889999999987633322211111 12221 24564 5664 33 3566899999998753211
Q ss_pred cccccccCCCCeeEEEe----cC-CCCCeeeEEeCCCCCcEEEEEeC---------CCcEEEEeCCCccc
Q 015484 339 QLELDAEDGPPELLFSH----GG-HKAKISDFSWNKNDPWVISSVAD---------DNTVQVWQMTDSIY 394 (406)
Q Consensus 339 ~~~~~~~~~~~~~~~~~----~~-h~~~v~~~~~s~~~~~~l~s~~~---------dg~i~iw~~~~~~~ 394 (406)
.... .. ++.. .+ .......+++++++..++++... .+.|.+.|+.++..
T Consensus 261 v~~~------~~-~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv 323 (386)
T 3sjl_D 261 FLPA------VE-ALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 323 (386)
T ss_dssp ECCC------EE-SSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred eecc------ee-ccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE
Confidence 0000 00 0000 00 11233457778888855554331 24688888888754
No 231
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.87 E-value=4.8e-10 Score=101.89 Aligned_cols=182 Identities=12% Similarity=0.008 Sum_probs=94.6
Q ss_pred CCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccccc
Q 015484 178 KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAH 257 (406)
Q Consensus 178 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 257 (406)
+. .+++++.||.|..||..+++..... .. ..+.+..+.. ++.++++++.||.|+.||.++++.+..+..+
T Consensus 9 ~~-~v~~gs~dg~v~a~d~~tG~~~W~~------~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~ 78 (369)
T 2hz6_A 9 ET-LLFVSTLDGSLHAVSKRTGSIKWTL------KE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT 78 (369)
T ss_dssp TT-EEEEEETTSEEEEEETTTCCEEEEE------EC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCC
T ss_pred CC-EEEEEcCCCEEEEEECCCCCEEEEe------cC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeecc
Confidence 44 8999999999999999988643222 22 2343444444 4567777789999999999988875544322
Q ss_pred CC-Cee-EEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 015484 258 EK-EVN-YLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI 335 (406)
Q Consensus 258 ~~-~v~-~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~ 335 (406)
.. .+. +..+. .+. .+++++.++.|+.||.++++. +..+..+. ...++|.+. .+++++.|+.|+.||..+.
T Consensus 79 ~~~~~~~sp~~~-~~~-~v~~g~~dg~v~a~D~~tG~~-~w~~~~~~----~~~~~p~~~-~v~~~~~dg~v~a~d~~tG 150 (369)
T 2hz6_A 79 IPELVQASPCRS-SDG-ILYMGKKQDIWYVIDLLTGEK-QQTLSSAF----ADSLSPSTS-LLYLGRTEYTITMYDTKTR 150 (369)
T ss_dssp HHHHHTTCSCC-------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSS
T ss_pred CccccccCceEe-cCC-EEEEEeCCCEEEEEECCCCcE-EEEecCCC----cccccccCC-EEEEEecCCEEEEEECCCC
Confidence 11 110 01111 233 677888899999999998765 44444332 234567665 5888888999999999874
Q ss_pred CcccccccccCCCCeeEEEecCCCCCeeeEEeCCCC---CcEEEEEeCCCcEEEEeCCCccc
Q 015484 336 GDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKND---PWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~---~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
..... +.... .....++++. . .++.++.||.|+.||..++..
T Consensus 151 ~~~W~------------~~~~~----~~~~~~~~~~~~~~-~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 151 ELRWN------------ATYFD----YAASLPEDDVDYKM-SHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp SCCCE------------EEEEE----ECCBCCCCCTTCCC-CEEEEETSCEEEEECTTTCCE
T ss_pred CEEEe------------Eeccc----ccCccccCCccccc-eEEEECCCCEEEEEECCCCcE
Confidence 32211 11111 1222333321 3 356678899999999988753
No 232
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.85 E-value=1.4e-07 Score=86.30 Aligned_cols=247 Identities=9% Similarity=-0.003 Sum_probs=141.1
Q ss_pred CCCcEEEEEeCC----CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec----------CCCeE
Q 015484 126 QKPNLVGTKTSS----CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS----------HDNKI 191 (406)
Q Consensus 126 ~~~~~l~~~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~----------~dg~i 191 (406)
++..++++...+ +.|.++|..+.. .+..+..-..+ .++++|+++ +|+.+. .++.|
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~--------vv~~I~vG~~P--gia~SpDgk-~lyVan~~~~~~~~G~~~~~V 151 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTGR--------ILGMTDGGFLP--HPVAAEDGS-FFAQASTVFERIARGKRTDYV 151 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTE--------EEEEEEECSSC--EEEECTTSS-CEEEEEEEEEETTEEEEEEEE
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCCE--------EEEEEECCCCC--ceEECCCCC-EEEEEeccccccccCCCCCEE
Confidence 443444444433 799999998843 24455443445 899999998 666654 46789
Q ss_pred EEEeCCCccCCceeeee--eeeeccCccEEEEEeeCCCCCEEEEEe-c-CCcEEEEECCCCcccccccccCCCeeEEEec
Q 015484 192 CLWDVSALAQDKVIDAM--HVYEAHESVVEDVSWHLKNENLFGSAG-D-DCQLMIWDLRTNQTQQRVKAHEKEVNYLSFN 267 (406)
Q Consensus 192 ~iwd~~~~~~~~~~~~~--~~~~~~~~~i~~i~~~p~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~ 267 (406)
.++|..+.+....+..- ..+ ........+.|+| ++++++++. . ++.|.+.|+.+++.+..+.... +....
T Consensus 152 sviD~~t~~vv~~I~v~g~~r~-~~g~~P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~ 225 (426)
T 3c75_H 152 EVFDPVTFLPIADIELPDAPRF-LVGTYQWMNALTP-DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIF 225 (426)
T ss_dssp EEECTTTCCEEEEEEETTCCCC-CBSCCGGGSEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEE
T ss_pred EEEECCCCcEEEEEECCCcccc-ccCCCcceEEEcC-CCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeec
Confidence 99999886543222110 000 0012345789999 455555554 3 6889999999998877775322 13344
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCcEE----ecCCCCCe-EEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccc-
Q 015484 268 PYNEWVLATASSDTTVALFDMRKMTVPLHI----LSSHTEEV-FQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE- 341 (406)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~----~~~h~~~v-~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~- 341 (406)
|.+...+++.+.||.+.+.+....+. ... +.....++ ..+.+.+++.. ++..+..+.|.+.|+.........
T Consensus 226 p~g~~~~v~~~~dG~~~~V~~~~~~v-~~~~~~~~~v~~~p~~~~~~~~~dg~~-~~~~s~~g~V~ViD~~~~~~~v~~~ 303 (426)
T 3c75_H 226 PASPTVFYMNCRDGSLARVDFADGET-KVTNTEVFHTEDELLINHPAFSLRSGR-LVWPTYTGKIFQADLTAEGATFRAP 303 (426)
T ss_dssp EEETTEEEEEETTSSEEEEECCTTCC-EEEECCCCSCTTSCBCSCCEECTTTCE-EEEEBTTSEEEEEEECSSCEEECCC
T ss_pred cCCCcEEEEEcCCCCEEEEECCCCcE-EEEeeeeeccCCCceeeEeeecCCCCE-EEEEeCCCcEEEEeccCCceEEeee
Confidence 55544677777888888888844332 211 11111221 23567888876 444566889999998652211000
Q ss_pred ccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeC---------CCcEEEEeCCCccc
Q 015484 342 LDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVAD---------DNTVQVWQMTDSIY 394 (406)
Q Consensus 342 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~---------dg~i~iw~~~~~~~ 394 (406)
............. .......++++|+++.++++... ++.|.+.|+.+...
T Consensus 304 ~~~~~~~~i~~g~---~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kv 362 (426)
T 3c75_H 304 IEALTEAERADDW---RPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGER 362 (426)
T ss_dssp EESSCTTTGGGTE---EECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred eeecccccccccc---ccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeE
Confidence 0000000000000 01112346899998865655431 35799999988754
No 233
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.85 E-value=4.5e-06 Score=73.48 Aligned_cols=241 Identities=6% Similarity=0.051 Sum_probs=141.3
Q ss_pred CCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEE
Q 015484 104 PKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLV 183 (406)
Q Consensus 104 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 183 (406)
...++...+.-......++|.|++ .++++-...+.|..|+..... ...........++++.+++. +++
T Consensus 20 ~~~~~~~~~p~~~~pegia~~~~g-~lyv~d~~~~~I~~~d~~g~~----------~~~~~~~~~p~gia~~~dG~-l~v 87 (306)
T 2p4o_A 20 APAKIITSFPVNTFLENLASAPDG-TIFVTNHEVGEIVSITPDGNQ----------QIHATVEGKVSGLAFTSNGD-LVA 87 (306)
T ss_dssp CCEEEEEEECTTCCEEEEEECTTS-CEEEEETTTTEEEEECTTCCE----------EEEEECSSEEEEEEECTTSC-EEE
T ss_pred CCceEeEeCCCCCCcceEEECCCC-CEEEEeCCCCeEEEECCCCce----------EEEEeCCCCceeEEEcCCCc-EEE
Confidence 345566666655778899999988 577776678899999876521 11112234678999999887 655
Q ss_pred EecCC-C-eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc-cc--------
Q 015484 184 SGSHD-N-KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT-QQ-------- 252 (406)
Q Consensus 184 s~~~d-g-~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~~-------- 252 (406)
+.... + .|..++..++.. ..+.... .......++..+ ++..+++-..++.|..+|...++. +.
T Consensus 88 ad~~~~~~~v~~~d~~~g~~----~~~~~~~-~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~ 161 (306)
T 2p4o_A 88 TGWNADSIPVVSLVKSDGTV----ETLLTLP-DAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR 161 (306)
T ss_dssp EEECTTSCEEEEEECTTSCE----EEEEECT-TCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSC
T ss_pred EeccCCcceEEEEcCCCCeE----EEEEeCC-CccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCcccc
Confidence 54332 2 466677665432 1111111 122234444443 455555555688999999875421 11
Q ss_pred -cccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCC-CCC-CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEE
Q 015484 253 -RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRK-MTV-PLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMV 329 (406)
Q Consensus 253 -~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~-~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~i 329 (406)
.....-...+.+ +|++..++++-...+.|..||+.. +.. ....+.. ......++++++|. ++++....+.|.+
T Consensus 162 ~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~-l~va~~~~~~V~~ 237 (306)
T 2p4o_A 162 SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGN-LYGATHIYNSVVR 237 (306)
T ss_dssp SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCC-EEEECBTTCCEEE
T ss_pred ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCC-EEEEeCCCCeEEE
Confidence 001111234555 777875666666778999999874 211 1122211 13456789999995 6767667889999
Q ss_pred EeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeC---CCCCcEEEEEe
Q 015484 330 WDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWN---KNDPWVISSVA 379 (406)
Q Consensus 330 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s---~~~~~~l~s~~ 379 (406)
+|... .. ..+..........++++|. |++..++++..
T Consensus 238 ~~~~G--~~-----------~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 238 IAPDR--ST-----------TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp ECTTC--CE-----------EEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred ECCCC--CE-----------EEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence 98642 10 1111122223458899998 78775666654
No 234
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.82 E-value=2.5e-05 Score=70.09 Aligned_cols=242 Identities=8% Similarity=-0.003 Sum_probs=146.6
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEE
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLW 194 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 194 (406)
....+|.+..+.. .++++ . ...|+..++.... ...+......+.+++|++.+..++++-...+.|..+
T Consensus 33 ~d~~~C~~~~~~~-~ll~~-~-~~~I~~i~~~g~~---------~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~ 100 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFA-N-RIDIRQVLPHRSE---------YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRA 100 (349)
T ss_dssp TTSSCEEESSSCC-EEEEE-C-BSCEEEECTTSCC---------EEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCCcccccccCc-eeEee-c-ccceEEEeCCCCe---------eEEeecCCCceEEEEEeccccEEEEEeccCCceEEE
Confidence 3445566655533 33433 3 3447777776521 222222334578999998666355555567899999
Q ss_pred eCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEE
Q 015484 195 DVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVL 274 (406)
Q Consensus 195 d~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 274 (406)
++...... ............+++.+.++.++++-...+.|.+.++........+.........++++|.+..++
T Consensus 101 ~~~g~~~~------~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly 174 (349)
T 3v64_C 101 NLNGSNVE------EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIY 174 (349)
T ss_dssp ETTSCSCE------EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEE
T ss_pred ecCCCCce------EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEE
Confidence 98764321 111112234567888876777877777788999999875443222233335578999999777566
Q ss_pred EEEeCC-CcEEEEeCCCCCCCcEEe-cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeE
Q 015484 275 ATASSD-TTVALFDMRKMTVPLHIL-SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELL 352 (406)
Q Consensus 275 ~~~~~d-g~i~vwd~~~~~~~~~~~-~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (406)
++-... +.|..+++.... ...+ ...-...+.|+++|++..+.++-...+.|..+|+..... ..+
T Consensus 175 ~td~~~~~~I~r~~~dG~~--~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~------------~~~ 240 (349)
T 3v64_C 175 WTDWGNTPRIEASSMDGSG--RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR------------KAV 240 (349)
T ss_dssp EEECSSSCEEEEEETTSCS--CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEE
T ss_pred EeccCCCCEEEEEeCCCCC--cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce------------EEE
Confidence 665555 789999887532 2222 223446799999998777777777788899999864111 111
Q ss_pred EEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 353 FSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 353 ~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
..........+++. .+. ++++-...+.|...+..++
T Consensus 241 --~~~~~~~P~giav~-~~~-ly~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 241 --ISQGLPHPFAITVF-EDS-LYWTDWHTKSINSANKFTG 276 (349)
T ss_dssp --ECSSCSSEEEEEEE-TTE-EEEEETTTTEEEEEETTTC
T ss_pred --EeCCCCCceEEEEE-CCE-EEEecCCCCeEEEEEccCC
Confidence 11123345667773 333 6666666677777764433
No 235
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.81 E-value=7.7e-06 Score=72.54 Aligned_cols=243 Identities=9% Similarity=0.008 Sum_probs=141.0
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC--------------------CCCCeeEEEec
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG--------------------HDKEGYGLSWS 175 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~--------------------h~~~v~~l~~~ 175 (406)
.....++|.+++ .++.++..++.|..|+...... ..+.. ......++++.
T Consensus 19 ~~p~~i~~d~~g-~~l~v~~~~~~i~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~ 88 (322)
T 2fp8_A 19 YAPNSFTFDSTN-KGFYTSVQDGRVIKYEGPNSGF---------VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYN 88 (322)
T ss_dssp SCCCCEECCTTC-SSEEEECTTSEEEEECCTTTCE---------EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEE
T ss_pred CCceEEEEcCCC-CEEEEEcCCCeEEEECCCCCce---------EEEecccccccccccccccchhccccCCCCceEEEc
Confidence 456778899987 5677788889999998765211 11110 01346889999
Q ss_pred CCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeec-cCccEEEEEeeCCCCCEEEEEec-----------------C
Q 015484 176 PFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEA-HESVVEDVSWHLKNENLFGSAGD-----------------D 237 (406)
Q Consensus 176 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~l~~~~~-----------------d 237 (406)
+++. .|+.+...+.|..+|..++.. ..+. ....+ .....+.+++.+.+++++++-.. +
T Consensus 89 ~~~g-~l~v~d~~~~i~~~d~~~g~~-~~~~--~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~ 164 (322)
T 2fp8_A 89 LQNN-QLYIVDCYYHLSVVGSEGGHA-TQLA--TSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKT 164 (322)
T ss_dssp TTTT-EEEEEETTTEEEEECTTCEEC-EEEE--SEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCC
T ss_pred CCCC-cEEEEECCCCEEEEeCCCCEE-EEec--ccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCC
Confidence 7333 455554455588888765321 1110 01111 11346788998723566655432 3
Q ss_pred CcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC-CcEEecCCCCCeEEEEEcCCCCC
Q 015484 238 CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV-PLHILSSHTEEVFQVEWDPNHET 316 (406)
Q Consensus 238 g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~i~~~p~~~~ 316 (406)
|.|..+|..+++...... .....+.++++|++..++++-+..+.|.+|++..... ....+....+ ...+++.++|.
T Consensus 165 g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~- 241 (322)
T 2fp8_A 165 GRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGH- 241 (322)
T ss_dssp EEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSC-
T ss_pred ceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCC-
Confidence 678888887665322221 2234567999999884455555668999999875321 1122211223 78899999996
Q ss_pred EEEEEeC----------CCcEEEEeCCCCCcccccccccCCCCeeEEEecCC----CCCeeeEEeCCCCCcEEEEEeCCC
Q 015484 317 VLASSAD----------DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH----KAKISDFSWNKNDPWVISSVADDN 382 (406)
Q Consensus 317 ~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~~~~s~~~~~~l~s~~~dg 382 (406)
+.++... .+.|..+|... +.+..+... ...++.+++ .++. ++++....+
T Consensus 242 l~va~~~~~~~~~~~~~~~~v~~~d~~G---------------~~~~~~~~~~g~~~~~~~~~~~-~~g~-L~v~~~~~~ 304 (322)
T 2fp8_A 242 FWVSSSEELDGNMHGRVDPKGIKFDEFG---------------NILEVIPLPPPFAGEHFEQIQE-HDGL-LYIGTLFHG 304 (322)
T ss_dssp EEEEEEEETTSSTTSCEEEEEEEECTTS---------------CEEEEEECCTTTTTSCCCEEEE-ETTE-EEEECSSCS
T ss_pred EEEEecCcccccccCCCccEEEEECCCC---------------CEEEEEECCCCCccccceEEEE-eCCE-EEEeecCCC
Confidence 5555443 45677777542 222222211 234666666 3455 677766788
Q ss_pred cEEEEeCCCc
Q 015484 383 TVQVWQMTDS 392 (406)
Q Consensus 383 ~i~iw~~~~~ 392 (406)
.|..+++...
T Consensus 305 ~i~~~~~~~~ 314 (322)
T 2fp8_A 305 SVGILVYDKK 314 (322)
T ss_dssp EEEEEEC---
T ss_pred ceEEEecccc
Confidence 8999987643
No 236
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.81 E-value=5.7e-07 Score=76.60 Aligned_cols=196 Identities=10% Similarity=0.035 Sum_probs=131.0
Q ss_pred eeEEEecCCCCCeEEEecC--CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECC
Q 015484 169 GYGLSWSPFKEGYLVSGSH--DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR 246 (406)
Q Consensus 169 v~~l~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~ 246 (406)
...++|++++. +.++.+. ++.|.++|+.+++....+. +.. ......+++. ++.++++.-.++.+.++|..
T Consensus 23 ~~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~----l~~-~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~ 94 (266)
T 2iwa_A 23 TQGLVYAENDT-LFESTGLYGRSSVRQVALQTGKVENIHK----MDD-SYFGEGLTLL--NEKLYQVVWLKNIGFIYDRR 94 (266)
T ss_dssp EEEEEECSTTE-EEEEECSTTTCEEEEEETTTCCEEEEEE----CCT-TCCEEEEEEE--TTEEEEEETTCSEEEEEETT
T ss_pred cccEEEeCCCe-EEEECCCCCCCEEEEEECCCCCEEEEEe----cCC-CcceEEEEEe--CCEEEEEEecCCEEEEEECC
Confidence 57999998754 5554443 6899999999875433221 111 1123345665 46777777789999999999
Q ss_pred CCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCC-----CCCeEEEEEcCCCCCEEEEE
Q 015484 247 TNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSH-----TEEVFQVEWDPNHETVLASS 321 (406)
Q Consensus 247 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h-----~~~v~~i~~~p~~~~~l~s~ 321 (406)
+.+.+.++......- ..+++++..++++ ..++.|.++|..+.+. +..+... -..++.+.|. ++ .+.+..
T Consensus 95 t~~v~~~i~~g~~~g--~glt~Dg~~l~vs-~gs~~l~viD~~t~~v-~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~ 168 (266)
T 2iwa_A 95 TLSNIKNFTHQMKDG--WGLATDGKILYGS-DGTSILYEIDPHTFKL-IKKHNVKYNGHRVIRLNELEYI-NG-EVWANI 168 (266)
T ss_dssp TTEEEEEEECCSSSC--CEEEECSSSEEEE-CSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TT-EEEEEE
T ss_pred CCcEEEEEECCCCCe--EEEEECCCEEEEE-CCCCeEEEEECCCCcE-EEEEEECCCCcccccceeEEEE-CC-EEEEec
Confidence 998888875331222 3344567745554 4678999999988664 4443321 1247788888 56 466666
Q ss_pred eCCCcEEEEeCCCCCcccccccccCCCCeeEEEecC-------------CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 322 ADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG-------------HKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 322 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------------h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
..++.|.+.|..+... +..+.- -......++|+|+++.+++++...+.|.+.+
T Consensus 169 ~~~~~V~vID~~tg~V--------------~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~ 234 (266)
T 2iwa_A 169 WQTDCIARISAKDGTL--------------LGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK 234 (266)
T ss_dssp TTSSEEEEEETTTCCE--------------EEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred CCCCeEEEEECCCCcE--------------EEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence 6788999999987332 222211 1135689999999988899998889999988
Q ss_pred CCCc
Q 015484 389 MTDS 392 (406)
Q Consensus 389 ~~~~ 392 (406)
+...
T Consensus 235 l~~~ 238 (266)
T 2iwa_A 235 LHLV 238 (266)
T ss_dssp EEEC
T ss_pred Eecc
Confidence 8664
No 237
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.80 E-value=1.5e-05 Score=72.55 Aligned_cols=241 Identities=7% Similarity=-0.023 Sum_probs=147.0
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeC
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV 196 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 196 (406)
.-+|.+..+.. . |+.+. ...|+..++.... ...+........+++|.+.+..++++-...+.|..+++
T Consensus 78 ~~~C~~~~~~~-~-l~~~~-~~~I~~i~~~~~~---------~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~ 145 (386)
T 3v65_B 78 RRSCKALGPEP-V-LLFAN-RIDIRQVLPHRSE---------YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANL 145 (386)
T ss_dssp SSCEEECSSCC-E-EEEEC-BSCEEEECTTSCC---------CEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCeECCccccc-e-eEeec-CccceeeccCCCc---------EEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEec
Confidence 34455545532 3 33333 3458888876521 22233334557899999866635555566789999998
Q ss_pred CCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEE
Q 015484 197 SALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLAT 276 (406)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~ 276 (406)
...... ............+++.+.++.++++-...+.|.+.++........+.........++++|.+..++++
T Consensus 146 ~g~~~~------~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~t 219 (386)
T 3v65_B 146 NGSNVE------EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWT 219 (386)
T ss_dssp TSCCEE------EEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred CCCCcE------EEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEe
Confidence 764311 11111223456788887677777777778889999887544322233333567899999987755655
Q ss_pred EeCC-CcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEe
Q 015484 277 ASSD-TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH 355 (406)
Q Consensus 277 ~~~d-g~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 355 (406)
-... +.|..+++..... .......-...+.|+|+|++..+.++-+..+.|..+|+..... ..+ .
T Consensus 220 d~~~~~~I~r~~~dG~~~-~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~------------~~~--~ 284 (386)
T 3v65_B 220 DWGNTPRIEASSMDGSGR-RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR------------KAV--I 284 (386)
T ss_dssp ECSSSCEEEEEETTSCSC-EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC------------EEE--E
T ss_pred ccCCCCEEEEEeCCCCCc-EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee------------EEE--E
Confidence 5555 6888888875332 2223333456799999988777777777788899999864111 111 1
Q ss_pred cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 356 GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 356 ~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.........+++. .+. ++++-...+.|..++..++
T Consensus 285 ~~~~~~P~giav~-~~~-ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 285 SQGLPHPFAITVF-EDS-LYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp CSSCSSEEEEEEE-TTE-EEEEETTTTEEEEEETTTC
T ss_pred ECCCCCceEEEEE-CCE-EEEeeCCCCeEEEEECCCC
Confidence 1223346677773 333 6667666777888874444
No 238
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.79 E-value=9.6e-07 Score=74.35 Aligned_cols=194 Identities=13% Similarity=0.149 Sum_probs=123.3
Q ss_pred CeEEEEEeecCCce--eEEEEcCCCCcEEEEEeCCC--eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCC
Q 015484 105 KVEIAQKIRVDGEV--NRARCMPQKPNLVGTKTSSC--EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEG 180 (406)
Q Consensus 105 ~~~~~~~~~h~~~v--~~i~~~p~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 180 (406)
..++++.++|...- ..+.|+ ++ .++.+.+.+| .|+++|+.+.+. ...+.-. .........+.+..
T Consensus 30 ~~~vv~~~phd~~~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv--------~~~~~l~-~~~FgeGit~~g~~ 98 (262)
T 3nol_A 30 DYQIVHSYPHDTKAFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKT--------LQQIELG-KRYFGEGISDWKDK 98 (262)
T ss_dssp EEEEEEEEECCTTCEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCE--------EEEEECC-TTCCEEEEEEETTE
T ss_pred ceEEEEEecCCCCcccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcE--------EEEEecC-CccceeEEEEeCCE
Confidence 36788889998655 889998 55 6666766666 899999998533 3333322 23333222233553
Q ss_pred eEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccccc--C
Q 015484 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAH--E 258 (406)
Q Consensus 181 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~ 258 (406)
+.+..-.++.+.++|..+.+.... +... ..-..++ +++..++++ ..++.|.++|..+.+.+..+... .
T Consensus 99 ly~ltw~~~~v~v~D~~t~~~~~t------i~~~-~eG~glt--~dg~~L~~S-dGs~~i~~iDp~T~~v~~~I~V~~~g 168 (262)
T 3nol_A 99 IVGLTWKNGLGFVWNIRNLRQVRS------FNYD-GEGWGLT--HNDQYLIMS-DGTPVLRFLDPESLTPVRTITVTAHG 168 (262)
T ss_dssp EEEEESSSSEEEEEETTTCCEEEE------EECS-SCCCCEE--ECSSCEEEC-CSSSEEEEECTTTCSEEEEEECEETT
T ss_pred EEEEEeeCCEEEEEECccCcEEEE------EECC-CCceEEe--cCCCEEEEE-CCCCeEEEEcCCCCeEEEEEEeccCC
Confidence 555555689999999988654322 2221 1123344 335555554 44788999999998887776432 1
Q ss_pred ---CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCC------------CCCeEEEEEcCCCCCEEEEEe
Q 015484 259 ---KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSH------------TEEVFQVEWDPNHETVLASSA 322 (406)
Q Consensus 259 ---~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h------------~~~v~~i~~~p~~~~~l~s~~ 322 (406)
..++.+.|. +|. +++..-.+..|.+.|.++++. +..+... ....+.|+|+|+++.+++||-
T Consensus 169 ~~~~~lNELe~~-~G~-lyan~w~~~~I~vIDp~tG~V-~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 169 EELPELNELEWV-DGE-IFANVWQTNKIVRIDPETGKV-TGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EECCCEEEEEEE-TTE-EEEEETTSSEEEEECTTTCBE-EEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred ccccccceeEEE-CCE-EEEEEccCCeEEEEECCCCcE-EEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 334567776 565 666555678999999998764 3333321 235789999999887666663
No 239
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.79 E-value=2.9e-05 Score=68.61 Aligned_cols=228 Identities=9% Similarity=0.015 Sum_probs=137.8
Q ss_pred CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCcc
Q 015484 138 CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESV 217 (406)
Q Consensus 138 g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 217 (406)
..|+..++.... ...+........+++|++.+..++++-...+.|..+++.......... ..+...-..
T Consensus 10 ~~I~~i~~~~~~---------~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~--~~~~~~~~~ 78 (316)
T 1ijq_A 10 HEVRKMTLDRSE---------YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD--TVISRDIQA 78 (316)
T ss_dssp SSEEEEETTSCC---------CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE--EEECSSCSC
T ss_pred CeEEEEECCCcc---------eEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE--EEEeCCCCC
Confidence 458888887632 122223345678999998766355565667899999987521000000 111112234
Q ss_pred EEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCC-CcEEEEeCCCCCCCcE
Q 015484 218 VEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD-TTVALFDMRKMTVPLH 296 (406)
Q Consensus 218 i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~ 296 (406)
...+++.+.+++++++-...+.|.++++........+.........++++|.+..++++.... +.|..+++.... ..
T Consensus 79 p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~--~~ 156 (316)
T 1ijq_A 79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IY 156 (316)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--EE
T ss_pred cCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC--eE
Confidence 578888875677777777888999999875433222232335678999999777455554433 688888876422 22
Q ss_pred Ee-cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEE
Q 015484 297 IL-SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVI 375 (406)
Q Consensus 297 ~~-~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l 375 (406)
.+ ...-...+.|+++|++..+.++-+..+.|..+|+.... ...+............+++.. +. ++
T Consensus 157 ~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~------------~~~~~~~~~~~~~P~giav~~-~~-ly 222 (316)
T 1ijq_A 157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN------------RKTILEDEKRLAHPFSLAVFE-DK-VF 222 (316)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS------------CEEEEECTTTTSSEEEEEEET-TE-EE
T ss_pred EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc------------eEEEeecCCccCCcEEEEEEC-CE-EE
Confidence 22 22345688999999887666676777899999986411 122222112223456777743 33 66
Q ss_pred EEEeCCCcEEEEeCCCc
Q 015484 376 SSVADDNTVQVWQMTDS 392 (406)
Q Consensus 376 ~s~~~dg~i~iw~~~~~ 392 (406)
++-...+.|..++..++
T Consensus 223 ~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 223 WTDIINEAIFSANRLTG 239 (316)
T ss_dssp EEETTTTEEEEEETTTC
T ss_pred EEECCCCeEEEEeCCCC
Confidence 67666778888887554
No 240
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.75 E-value=3e-06 Score=71.32 Aligned_cols=192 Identities=8% Similarity=0.031 Sum_probs=124.6
Q ss_pred eEEEEEeecCCce--eEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEE
Q 015484 106 VEIAQKIRVDGEV--NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLV 183 (406)
Q Consensus 106 ~~~~~~~~h~~~v--~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 183 (406)
.++++.+.|...- ..+.|+. ..+..+.+.+|.|+++|+.+.+. ...+....--.-.+++. +..+.+
T Consensus 43 ~~Vv~~~phd~~~ftqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv--------~~~~l~~~~FgeGit~~--g~~Ly~ 110 (268)
T 3nok_A 43 AHIIREYPHATNAFTQGLVFHQ--GHFFESTGHQGTLRQLSLESAQP--------VWMERLGNIFAEGLASD--GERLYQ 110 (268)
T ss_dssp EEEEEEEECCTTCCEEEEEEET--TEEEEEETTTTEEEECCSSCSSC--------SEEEECTTCCEEEEEEC--SSCEEE
T ss_pred eEEEEEEcCCCccccceEEEEC--CEEEEEcCCCCEEEEEECCCCcE--------EeEECCCCcceeEEEEe--CCEEEE
Confidence 3677888887555 6888874 36788888899999999988432 33331111112235554 443566
Q ss_pred EecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccC-----
Q 015484 184 SGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHE----- 258 (406)
Q Consensus 184 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----- 258 (406)
..-.++.+.+||..+.+....+ .. ...-..+++. +. .|+.+..++.|.++|..+.+.+.++....
T Consensus 111 ltw~~~~v~V~D~~Tl~~~~ti------~~-~~eGwGLt~D--g~-~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v 180 (268)
T 3nok_A 111 LTWTEGLLFTWSGMPPQRERTT------RY-SGEGWGLCYW--NG-KLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPV 180 (268)
T ss_dssp EESSSCEEEEEETTTTEEEEEE------EC-SSCCCCEEEE--TT-EEEEECSSSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred EEccCCEEEEEECCcCcEEEEE------eC-CCceeEEecC--CC-EEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccc
Confidence 6667899999999886543322 22 1222445543 44 44455568899999999988877763321
Q ss_pred CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC-------------CCCCeEEEEEcCCCCCEEEEEe
Q 015484 259 KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS-------------HTEEVFQVEWDPNHETVLASSA 322 (406)
Q Consensus 259 ~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-------------h~~~v~~i~~~p~~~~~l~s~~ 322 (406)
..++.+.|. +|. +++..-.+..|.+.|.++++. +..+.. -....+.|+|+|+++.+++||-
T Consensus 181 ~~lNeLe~~-dG~-lyanvw~s~~I~vIDp~TG~V-~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 181 ELINELECA-NGV-IYANIWHSSDVLEIDPATGTV-VGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp CCEEEEEEE-TTE-EEEEETTCSEEEEECTTTCBE-EEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred ccccccEEe-CCE-EEEEECCCCeEEEEeCCCCcE-EEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 245677777 565 666555677999999998764 333321 1236799999999888787773
No 241
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.69 E-value=6.6e-06 Score=68.66 Aligned_cols=194 Identities=13% Similarity=0.133 Sum_probs=123.3
Q ss_pred CCeEEEEEeecCCc--eeEEEEcCCCCcEEEEEeCC--CeEEEEeCCCccccccCCCCCceeeeCCCC-CeeEEEecCCC
Q 015484 104 PKVEIAQKIRVDGE--VNRARCMPQKPNLVGTKTSS--CEVYVFDCAKQAEKQQDDCDPDLRLKGHDK-EGYGLSWSPFK 178 (406)
Q Consensus 104 ~~~~~~~~~~h~~~--v~~i~~~p~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~ 178 (406)
...++++.++|... ...+.|++ + .++.+.+.. +.|+++|+.++.. .....-... -.-+++.. +
T Consensus 7 ~~~~v~~~~phd~~~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tgkv--------~~~~~l~~~~fgeGi~~~--~ 74 (243)
T 3mbr_X 7 QGYRVVKRYPHDTTAFTEGLFYLR-G-HLYESTGETGRSSVRKVDLETGRI--------LQRAEVPPPYFGAGIVAW--R 74 (243)
T ss_dssp CCEEEEEEEECCTTCCEEEEEEET-T-EEEEEECCTTSCEEEEEETTTCCE--------EEEEECCTTCCEEEEEEE--T
T ss_pred cceEEEEEcCCCCccccccEEEEC-C-EEEEECCCCCCceEEEEECCCCCE--------EEEEeCCCCcceeEEEEe--C
Confidence 34788889999855 55899987 4 566666665 4899999998433 333322211 11234443 4
Q ss_pred CCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccC
Q 015484 179 EGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHE 258 (406)
Q Consensus 179 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 258 (406)
..+....-.++.+.+||..+.+... .+... ..-..++ +++..++++ ..++.|.++|..+.+.+.++....
T Consensus 75 ~~ly~ltw~~~~v~v~D~~tl~~~~------ti~~~-~~Gwglt--~dg~~L~vS-dgs~~l~~iDp~t~~~~~~I~V~~ 144 (243)
T 3mbr_X 75 DRLIQLTWRNHEGFVYDLATLTPRA------RFRYP-GEGWALT--SDDSHLYMS-DGTAVIRKLDPDTLQQVGSIKVTA 144 (243)
T ss_dssp TEEEEEESSSSEEEEEETTTTEEEE------EEECS-SCCCEEE--ECSSCEEEE-CSSSEEEEECTTTCCEEEEEECEE
T ss_pred CEEEEEEeeCCEEEEEECCcCcEEE------EEeCC-CCceEEe--eCCCEEEEE-CCCCeEEEEeCCCCeEEEEEEEcc
Confidence 4355556678999999998865432 22221 2223444 335566655 458899999999988877764321
Q ss_pred -----CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC-------------CCCCeEEEEEcCCCCCEEEE
Q 015484 259 -----KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS-------------HTEEVFQVEWDPNHETVLAS 320 (406)
Q Consensus 259 -----~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-------------h~~~v~~i~~~p~~~~~l~s 320 (406)
..++.+.|. +|. +++..-.+..|.+.|.++++. +..+.. .....+.|+++|+++.+++|
T Consensus 145 ~g~~~~~lNeLe~~-~G~-lyanvw~s~~I~vIDp~tG~V-~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVT 221 (243)
T 3mbr_X 145 GGRPLDNLNELEWV-NGE-LLANVWLTSRIARIDPASGKV-VAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVT 221 (243)
T ss_dssp TTEECCCEEEEEEE-TTE-EEEEETTTTEEEEECTTTCBE-EEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEE
T ss_pred CCcccccceeeEEe-CCE-EEEEECCCCeEEEEECCCCCE-EEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEE
Confidence 345667766 455 555555677999999998764 333321 12357899999998877777
Q ss_pred Ee
Q 015484 321 SA 322 (406)
Q Consensus 321 ~~ 322 (406)
|-
T Consensus 222 GK 223 (243)
T 3mbr_X 222 GK 223 (243)
T ss_dssp ET
T ss_pred CC
Confidence 63
No 242
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.69 E-value=1.2e-06 Score=77.72 Aligned_cols=223 Identities=11% Similarity=0.016 Sum_probs=133.1
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeC
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV 196 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 196 (406)
.+.++...+++ . |..++.+ |..+|... .. ...+............. +. .|..++.++.|..+|.
T Consensus 61 ~~~~~~~~~~g-~-l~v~t~~--l~~~d~~g-~~--------~~~~~~~~~~~~~~~~~--~~-~l~v~t~~~~l~~~d~ 124 (330)
T 3hxj_A 61 IECRPSIGKDG-T-IYFGSDK--VYAINPDG-TE--------KWRFDTKKAIVSDFTIF--ED-ILYVTSMDGHLYAINT 124 (330)
T ss_dssp EEECCEETTTT-E-ECCSSCE--EEEECCCG-GG--------GGGSCC-----CCEEEE--TT-EEEEECTTSEEEEECT
T ss_pred cccceEEecCC-c-EEEecCc--EEEECCCC-cE--------EEEEECCCCcccCceEE--CC-EEEEEecCCEEEEEcC
Confidence 34566666666 3 5555544 88888632 21 11111111112222333 33 6888888999999998
Q ss_pred CCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEE
Q 015484 197 SALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLAT 276 (406)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~ 276 (406)
. +... .........+.++...+ ++. +..++.++.|..+|.. ++....+......+.++...+++. +..
T Consensus 125 ~-g~~~------~~~~~~~~~~~~~~~~~-~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~--l~v 192 (330)
T 3hxj_A 125 D-GTEK------WRFKTKKAIYATPIVSE-DGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT--IYF 192 (330)
T ss_dssp T-SCEE------EEEECSSCCCSCCEECT-TSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC--EEE
T ss_pred C-CCEE------EEEcCCCceeeeeEEcC-CCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE--EEE
Confidence 7 4321 12222334455566654 444 4467788999999998 776655554556677778877776 444
Q ss_pred EeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEec
Q 015484 277 ASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG 356 (406)
Q Consensus 277 ~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (406)
++ +.|..+| .++.. +.........+.++...+++. |..++.++.+..+|... ..+....
T Consensus 193 ~t--~~l~~~d-~~g~~-~~~~~~~~~~~~~~~~~~~g~--l~v~t~~~gl~~~~~~g---------------~~~~~~~ 251 (330)
T 3hxj_A 193 GS--DKVYAIN-PDGTE-KWNFYAGYWTVTRPAISEDGT--IYVTSLDGHLYAINPDG---------------TEKWRFK 251 (330)
T ss_dssp ES--SSEEEEC-TTSCE-EEEECCSSCCCSCCEECTTSC--EEEEETTTEEEEECTTS---------------CEEEEEE
T ss_pred Ee--CEEEEEC-CCCcE-EEEEccCCcceeceEECCCCe--EEEEcCCCeEEEECCCC---------------CEeEEee
Confidence 44 7899999 55443 444444556688888888874 66677788888887432 2222223
Q ss_pred CCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 357 GHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 357 ~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
.....+..+...+++. |..++.+|.|..++..
T Consensus 252 ~~~~~~~~~~~~~~g~--l~v~t~~ggl~~~d~~ 283 (330)
T 3hxj_A 252 TGKRIESSPVIGNTDT--IYFGSYDGHLYAINPD 283 (330)
T ss_dssp CSSCCCSCCEECTTSC--EEEECTTCEEEEECTT
T ss_pred CCCCccccceEcCCCe--EEEecCCCCEEEECCC
Confidence 2333345566666675 5566778788888864
No 243
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.66 E-value=2.7e-06 Score=83.37 Aligned_cols=236 Identities=11% Similarity=0.102 Sum_probs=137.6
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCC-C----CCeeE-EEecCCCCCeEEEecC------CCeEEEEeC
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGH-D----KEGYG-LSWSPFKEGYLVSGSH------DNKICLWDV 196 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h-~----~~v~~-l~~~~~~~~~l~s~~~------dg~i~iwd~ 196 (406)
..|++++.|+.|..+|..+++. ...+..+ . ..+.+ ... .+. .++.++. +|.|..+|.
T Consensus 129 ~~v~v~~~dg~l~alD~~tG~~--------~W~~~~~~~~~~~~~~~~~p~v--~~~-~v~v~~~~~~~~~~g~v~a~D~ 197 (677)
T 1kb0_A 129 GKVYVGAWDGRLIALDAATGKE--------VWHQNTFEGQKGSLTITGAPRV--FKG-KVIIGNGGAEYGVRGYITAYDA 197 (677)
T ss_dssp TEEEEECTTSEEEEEETTTCCE--------EEEEETTTTCCSSCBCCSCCEE--ETT-EEEECCBCTTTCCBCEEEEEET
T ss_pred CEEEEEcCCCEEEEEECCCCCE--------EeeecCCcCcCcCcccccCcEE--ECC-EEEEEecccccCCCCEEEEEEC
Confidence 3577788899999999987543 2333322 1 11111 111 133 5666553 799999999
Q ss_pred CCccCCceeeeeeee-----------------e---------ccCccEEEEEeeCCCCCEEEEEecCC------------
Q 015484 197 SALAQDKVIDAMHVY-----------------E---------AHESVVEDVSWHLKNENLFGSAGDDC------------ 238 (406)
Q Consensus 197 ~~~~~~~~~~~~~~~-----------------~---------~~~~~i~~i~~~p~~~~~l~~~~~dg------------ 238 (406)
.+++....+...... . ........++++|. ..+++.++.++
T Consensus 198 ~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~-~~~vy~~~~~~~~w~~~~~~~~~ 276 (677)
T 1kb0_A 198 ETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE-LNTMYVGTGNGSPWSHKVRSPKG 276 (677)
T ss_dssp TTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT-TTEEEEECCCEESSCHHHHSTTC
T ss_pred CCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCC-CCEEEEECCCCccccCCCCCccC
Confidence 988654332211000 0 11112235678884 55666666553
Q ss_pred -------cEEEEECCCCcccccccc--cC-------CCeeEEEecCCCC--cEEEEEeCCCcEEEEeCCCCCCCcEEecC
Q 015484 239 -------QLMIWDLRTNQTQQRVKA--HE-------KEVNYLSFNPYNE--WVLATASSDTTVALFDMRKMTVPLHILSS 300 (406)
Q Consensus 239 -------~i~i~d~~~~~~~~~~~~--~~-------~~v~~i~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 300 (406)
.|..+|.++++.+..+.. +. .....+....+|+ ..++.++.+|.|+++|.++++. +.....
T Consensus 277 gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~-l~~~~~ 355 (677)
T 1kb0_A 277 GDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF-ISAKNF 355 (677)
T ss_dssp CCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE-EEEEES
T ss_pred CCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCE-eccccc
Confidence 599999999988766532 21 1122223333552 3789999999999999998764 332221
Q ss_pred CC----------C-Ce------------------------EEEEEcCCCCCEEEEEeCC---------------------
Q 015484 301 HT----------E-EV------------------------FQVEWDPNHETVLASSADD--------------------- 324 (406)
Q Consensus 301 h~----------~-~v------------------------~~i~~~p~~~~~l~s~~~d--------------------- 324 (406)
.. + ++ ..++++|+.. ++++...+
T Consensus 356 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~-~~yv~~~~~~~~~~~~~~~~~g~~~~~~~ 434 (677)
T 1kb0_A 356 VPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG-LVYLPAQNVPVNLMDDKKWEFNQAGPGKP 434 (677)
T ss_dssp SCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT-EEEEEEEECCCEEEECTTCCTTCCCTTST
T ss_pred cccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC-EEEEeChhcceeeeccccccccccccccc
Confidence 10 0 01 1468888876 45554332
Q ss_pred ----------------------CcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCC
Q 015484 325 ----------------------RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDN 382 (406)
Q Consensus 325 ----------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg 382 (406)
|.|..||+.+ .+.+..+. +..++....+...+. +++.++.||
T Consensus 435 ~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t--------------G~~~W~~~-~~~~~~~g~~~~~g~-~v~~g~~dg 498 (677)
T 1kb0_A 435 QSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA--------------QKAAWSVE-HVSPWNGGTLTTAGN-VVFQGTADG 498 (677)
T ss_dssp TGGGTCCCCEEECSSCCCSCCEEEEEEEETTT--------------TEEEEEEE-ESSSCCCCEEEETTT-EEEEECTTS
T ss_pred ccccccccccccccccCCCCCccEEEEEeCCC--------------CcEEeecC-CCCCCcCcceEeCCC-EEEEECCCC
Confidence 5677777765 23333332 223445555666666 677789999
Q ss_pred cEEEEeCCCccc
Q 015484 383 TVQVWQMTDSIY 394 (406)
Q Consensus 383 ~i~iw~~~~~~~ 394 (406)
.+++||..++..
T Consensus 499 ~l~a~D~~tG~~ 510 (677)
T 1kb0_A 499 RLVAYHAATGEK 510 (677)
T ss_dssp EEEEEETTTCCE
T ss_pred cEEEEECCCCce
Confidence 999999998854
No 244
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.65 E-value=0.00012 Score=65.58 Aligned_cols=205 Identities=5% Similarity=-0.043 Sum_probs=133.3
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
.....+..++|.+.+..++.+-...+.|+.++...... ...+........++++.+.+..+.++-...+.|.
T Consensus 70 ~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~--------~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~ 141 (349)
T 3v64_C 70 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV--------EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIE 141 (349)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred cCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc--------eEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEE
Confidence 33456889999987767777777788999999876311 1122222234568888876663666666678999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC-CcEEEEECCCCcccccccccCCCeeEEEecCCCC
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD-CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNE 271 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~ 271 (406)
+.+++.... . ......-.....++++|.++.++++-... +.|..+++............-...+.|+++|.+.
T Consensus 142 ~~~~dG~~~-~-----~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~ 215 (349)
T 3v64_C 142 VANLDGAHR-K-----VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGR 215 (349)
T ss_dssp EEETTSCSC-E-----EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTT
T ss_pred EEcCCCCce-E-----EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCC
Confidence 999875321 1 11122234578999999777777776665 8899999875433222222334568999998777
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 272 WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
.++++-...+.|..+|+..... ...+.........|++. .+ .++++-...+.|..++...
T Consensus 216 ~lY~aD~~~~~I~~~~~dG~~~-~~~~~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~ 275 (349)
T 3v64_C 216 RMYWVDAKHHVIERANLDGSHR-KAVISQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFT 275 (349)
T ss_dssp EEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTT
T ss_pred EEEEEECCCCEEEEEeCCCCce-EEEEeCCCCCceEEEEE-CC-EEEEecCCCCeEEEEEccC
Confidence 5666666677899999875332 33333334567888884 33 4677777788888888544
No 245
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.64 E-value=0.00018 Score=65.79 Aligned_cols=230 Identities=7% Similarity=-0.002 Sum_probs=140.6
Q ss_pred CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCc
Q 015484 137 SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHES 216 (406)
Q Consensus 137 dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 216 (406)
...|+..++.... ...+......+.+|+|++.+..++++-...+.|..+++......... .........
T Consensus 91 ~~~I~~i~l~~~~---------~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~--~~~~~~~~~ 159 (400)
T 3p5b_L 91 RHEVRKMTLDRSE---------YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY--DTVISRDIQ 159 (400)
T ss_dssp TTEEEEECTTSCS---------CEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCC--EEEECSSCS
T ss_pred cceeEEEccCCcc---------eeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcc--eEEEeCCCC
Confidence 4678888887631 22233445678899999876635555556788999988653210001 111222334
Q ss_pred cEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeC-CCcEEEEeCCCCCCCc
Q 015484 217 VVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS-DTTVALFDMRKMTVPL 295 (406)
Q Consensus 217 ~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~ 295 (406)
....+++.+.+++++++-...+.|.+.++........+.........|+++|.+..++.+-.. .+.|...++..... .
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~-~ 238 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-Y 238 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC-E
T ss_pred CcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc-E
Confidence 677888887677888777788899999987654333333334557899999977745554423 36899998875332 2
Q ss_pred EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEE
Q 015484 296 HILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVI 375 (406)
Q Consensus 296 ~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l 375 (406)
......-...+.|+++|.+..+.++-+..+.|..+|+.... ...+....+.......++... ..++
T Consensus 239 ~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~------------~~~~~~~~~~l~~P~gl~v~~--~~ly 304 (400)
T 3p5b_L 239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN------------RKTILEDEKRLAHPFSLAVFE--DKVF 304 (400)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC------------CEEEEECSSTTSSEEEEEEET--TEEE
T ss_pred EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc------------cEEEEeCCCCCCCCEEEEEeC--CEEE
Confidence 33333345789999999887666666677889999986421 122222112223455666632 2366
Q ss_pred EEEeCCCcEEEEeCCCc
Q 015484 376 SSVADDNTVQVWQMTDS 392 (406)
Q Consensus 376 ~s~~~dg~i~iw~~~~~ 392 (406)
.+-...+.|..++..++
T Consensus 305 wtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 305 WTDIINEAIFSANRLTG 321 (400)
T ss_dssp EEESSSCSEEEEESSSC
T ss_pred EecCCCCeEEEEEcCCC
Confidence 66666777888875554
No 246
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.62 E-value=4.4e-06 Score=82.09 Aligned_cols=155 Identities=10% Similarity=0.064 Sum_probs=88.4
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC--CCCCeeEEEecC--CCCCeEEEec------CCCeEEEEeCCC
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG--HDKEGYGLSWSP--FKEGYLVSGS------HDNKICLWDVSA 198 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~--~~~~~l~s~~------~dg~i~iwd~~~ 198 (406)
..|++++.|+.|+.+|..+++. .-.+.. +......+..+| .+. .++.++ .+|.|..||..+
T Consensus 122 g~v~v~~~dg~l~AlDa~TG~~--------~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~t 192 (689)
T 1yiq_A 122 GKVYVGVLDGRLEAIDAKTGQR--------AWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAET 192 (689)
T ss_dssp TEEEEECTTSEEEEEETTTCCE--------EEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTT
T ss_pred CEEEEEccCCEEEEEECCCCCE--------eeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCC
Confidence 3577788899999999987543 222221 111111111111 133 455554 378999999998
Q ss_pred ccCCceeeeeee--e-----------------------eccCccEEEEEeeCCCCCEEEEEecCC---------------
Q 015484 199 LAQDKVIDAMHV--Y-----------------------EAHESVVEDVSWHLKNENLFGSAGDDC--------------- 238 (406)
Q Consensus 199 ~~~~~~~~~~~~--~-----------------------~~~~~~i~~i~~~p~~~~~l~~~~~dg--------------- 238 (406)
++....+..... . .........++++| ...+++.++.++
T Consensus 193 G~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~ 271 (689)
T 1yiq_A 193 GKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDN 271 (689)
T ss_dssp CCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCC
T ss_pred CcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCc
Confidence 865433221000 0 00111123567887 456777777665
Q ss_pred ----cEEEEECCCCcccccccc--cC-------CCeeEEEecCCCC--cEEEEEeCCCcEEEEeCCCCCC
Q 015484 239 ----QLMIWDLRTNQTQQRVKA--HE-------KEVNYLSFNPYNE--WVLATASSDTTVALFDMRKMTV 293 (406)
Q Consensus 239 ----~i~i~d~~~~~~~~~~~~--~~-------~~v~~i~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~ 293 (406)
.|..+|.++++.+..+.. |. ..........+|. ..++.++.+|.++++|.++++.
T Consensus 272 ~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 341 (689)
T 1yiq_A 272 LFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL 341 (689)
T ss_dssp TTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred eeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence 399999999998766532 21 1111112222332 2688899999999999998764
No 247
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.61 E-value=2.9e-06 Score=71.40 Aligned_cols=192 Identities=13% Similarity=0.151 Sum_probs=116.0
Q ss_pred eeEEEecCCCCCeEEEecCCC--eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECC
Q 015484 169 GYGLSWSPFKEGYLVSGSHDN--KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR 246 (406)
Q Consensus 169 v~~l~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~ 246 (406)
...+.|+ ++. ++.+.+.+| .|+++|+.+++....+. +. ....-..++.. ++.+++..-.++.+.+||..
T Consensus 45 tqGL~~~-~~~-LyestG~~g~S~v~~vD~~Tgkv~~~~~----l~-~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~ 115 (262)
T 3nol_A 45 TEGFFYR-NGY-FYESTGLNGRSSIRKVDIESGKTLQQIE----LG-KRYFGEGISDW--KDKIVGLTWKNGLGFVWNIR 115 (262)
T ss_dssp EEEEEEE-TTE-EEEEEEETTEEEEEEECTTTCCEEEEEE----CC-TTCCEEEEEEE--TTEEEEEESSSSEEEEEETT
T ss_pred cceEEEE-CCE-EEEECCCCCCceEEEEECCCCcEEEEEe----cC-CccceeEEEEe--CCEEEEEEeeCCEEEEEECc
Confidence 4788998 454 777777766 89999999876433221 11 11112334444 56777777789999999999
Q ss_pred CCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCC--C---CCeEEEEEcCCCCCEEEEE
Q 015484 247 TNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSH--T---EEVFQVEWDPNHETVLASS 321 (406)
Q Consensus 247 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h--~---~~v~~i~~~p~~~~~l~s~ 321 (406)
+.+.+.++..... -..++ +++. .|+.+..++.|.++|..+.+. +..+... . ..++.+.|. +|+ +.+..
T Consensus 116 t~~~~~ti~~~~e-G~glt--~dg~-~L~~SdGs~~i~~iDp~T~~v-~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~ 188 (262)
T 3nol_A 116 NLRQVRSFNYDGE-GWGLT--HNDQ-YLIMSDGTPVLRFLDPESLTP-VRTITVTAHGEELPELNELEWV-DGE-IFANV 188 (262)
T ss_dssp TCCEEEEEECSSC-CCCEE--ECSS-CEEECCSSSEEEEECTTTCSE-EEEEECEETTEECCCEEEEEEE-TTE-EEEEE
T ss_pred cCcEEEEEECCCC-ceEEe--cCCC-EEEEECCCCeEEEEcCCCCeE-EEEEEeccCCccccccceeEEE-CCE-EEEEE
Confidence 9999888864322 23344 4566 344444567899999988664 4443321 1 345678887 564 66666
Q ss_pred eCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEE
Q 015484 322 ADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSV 378 (406)
Q Consensus 322 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~ 378 (406)
-.++.|.+.|..+....... ......+.... ...-....+.|+|+|+++.++++|
T Consensus 189 w~~~~I~vIDp~tG~V~~~I-d~~~L~~~~~~-~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 189 WQTNKIVRIDPETGKVTGII-DLNGILAEAGP-LPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp TTSSEEEEECTTTCBEEEEE-ECTTGGGGSCS-CCSSCCCEEEEEEETTTTEEEEEE
T ss_pred ccCCeEEEEECCCCcEEEEE-ECCcCcccccc-ccCcCCceEEEEEcCCCCEEEEEC
Confidence 67889999998874321111 00000000000 001123568899999988666665
No 248
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.60 E-value=5.7e-05 Score=68.72 Aligned_cols=204 Identities=5% Similarity=-0.043 Sum_probs=131.8
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
....+..++|.+.+..++.+-...+.|+.++...... ...+........++++.+.+..+.++-...+.|.+
T Consensus 114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~--------~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~ 185 (386)
T 3v65_B 114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV--------EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEV 185 (386)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE--------EEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEE
T ss_pred CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc--------EEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEE
Confidence 3456889999987667777777788999999876311 11122222344678888766635666666788888
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC-CcEEEEECCCCcccccccccCCCeeEEEecCCCCc
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD-CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEW 272 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 272 (406)
.+++.... . ......-.....|+++|.++.++++-... +.|..+++............-...+.|+++|.+..
T Consensus 186 ~~~dg~~~-~-----~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~ 259 (386)
T 3v65_B 186 ANLDGAHR-K-----VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRR 259 (386)
T ss_dssp CBTTSCSC-E-----EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTE
T ss_pred EeCCCCce-E-----EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCE
Confidence 88765321 1 11122234678999998667777666555 78999988754332222223345688999987775
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 273 VLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
++++-+..+.|..+|+..... ...+.........|++. .+ .++++-...+.|..++...
T Consensus 260 lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~ 318 (386)
T 3v65_B 260 MYWVDAKHHVIERANLDGSHR-KAVISQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFT 318 (386)
T ss_dssp EEEEETTTTEEEEECTTSCSC-EEEECSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTT
T ss_pred EEEEECCCCEEEEEeCCCCee-EEEEECCCCCceEEEEE-CC-EEEEeeCCCCeEEEEECCC
Confidence 666666677899999875332 33333334567888883 33 4677777788898888544
No 249
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.60 E-value=7.7e-05 Score=63.06 Aligned_cols=205 Identities=13% Similarity=0.141 Sum_probs=125.7
Q ss_pred eeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEE
Q 015484 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLM 241 (406)
Q Consensus 162 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~ 241 (406)
+.+-...+.+++|+|++..++++...++.|...|.. ++..+.+ .+.+ ......|++.+ ++.++++.-.++.+.
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i----~l~g-~~D~EGIa~~~-~g~~~vs~E~~~~l~ 94 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTI----PLDF-VKDLETIEYIG-DNQFVISDERDYAIY 94 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEE----ECSS-CSSEEEEEECS-TTEEEEEETTTTEEE
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEE----ecCC-CCChHHeEEeC-CCEEEEEECCCCcEE
Confidence 445556799999999876355557778889999987 4322111 1121 24577888886 555655555677888
Q ss_pred EEECCCCccc---ccc------cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCC--CCCCcEEec-------CCCC
Q 015484 242 IWDLRTNQTQ---QRV------KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRK--MTVPLHILS-------SHTE 303 (406)
Q Consensus 242 i~d~~~~~~~---~~~------~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~-------~h~~ 303 (406)
++++.....+ ... ...+.....++|+|.+..++++.-.+ ...+|.+.. ....+..+. .+..
T Consensus 95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~-p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~ 173 (255)
T 3qqz_A 95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN-PIEVYKVNGLLSSNELHISKDKALQRQFTLD 173 (255)
T ss_dssp EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS-SEEEEEEESTTCSSCCEEEECHHHHHTCCSS
T ss_pred EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC-CceEEEEcccccCCceeeecchhhccccccC
Confidence 8887654421 111 12344568999999987455544444 444444431 111122221 1334
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEec-CC------CCCeeeEEeCCCCCcEEE
Q 015484 304 EVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG-GH------KAKISDFSWNKNDPWVIS 376 (406)
Q Consensus 304 ~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~h------~~~v~~~~~s~~~~~~l~ 376 (406)
.+.+++++|....+++.+.....+.++|.... . .....+. +. -...-.|+|.++|. +++
T Consensus 174 d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~--~-----------~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyI 239 (255)
T 3qqz_A 174 DVSGAEFNQQKNTLLVLSHESRALQEVTLVGE--V-----------IGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYI 239 (255)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEECTTCC--E-----------EEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEE
T ss_pred CceeEEEcCCCCeEEEEECCCCeEEEEcCCCC--E-----------EEEEEcCCccCCcccccCCCCeeEECCCCC-EEE
Confidence 67899999998888888888899999997641 1 1122222 11 12567899999998 555
Q ss_pred EEeCCCcEEEEeC
Q 015484 377 SVADDNTVQVWQM 389 (406)
Q Consensus 377 s~~~dg~i~iw~~ 389 (406)
+ ++-+.++.+..
T Consensus 240 v-sE~n~~y~f~~ 251 (255)
T 3qqz_A 240 V-SEPNRFYRFTP 251 (255)
T ss_dssp E-ETTTEEEEEEC
T ss_pred E-cCCceEEEEEe
Confidence 5 67776666643
No 250
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.57 E-value=0.00012 Score=64.51 Aligned_cols=228 Identities=7% Similarity=0.019 Sum_probs=139.7
Q ss_pred CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCc
Q 015484 137 SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHES 216 (406)
Q Consensus 137 dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 216 (406)
...|+..++..... .....+. ....+.+++|.+.+..++.+-...+.|..+++........ .....-.
T Consensus 12 ~~~I~~i~l~~~~~------~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~-----~~~~~l~ 79 (318)
T 3sov_A 12 RRDLRLVDATNGKE------NATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN-----VVVSGLL 79 (318)
T ss_dssp EEEEEEEETTCTTS------CCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE-----EEEECCS
T ss_pred cCeEEEEECCCCce------EEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE-----EEcCCCC
Confidence 45689999876321 1111121 2235679999986653555656678999999876532111 1111223
Q ss_pred cEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEe-CCCcEEEEeCCCCCCCc
Q 015484 217 VVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS-SDTTVALFDMRKMTVPL 295 (406)
Q Consensus 217 ~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~ 295 (406)
....+++.+.++.++++-...+.|.++++........+.........++++|.+..++.+-. ..+.|...++..... .
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~ 158 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-F 158 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-E
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-E
Confidence 46678888767778777777889999998754332222233455789999997663444432 257888888864322 2
Q ss_pred EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEE
Q 015484 296 HILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVI 375 (406)
Q Consensus 296 ~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l 375 (406)
......-...+.|+++|++..+..+-+..+.|..+|+..... ..+. .+.......+++..+ .++
T Consensus 159 ~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~------------~~~~--~~~~~~P~glav~~~--~ly 222 (318)
T 3sov_A 159 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR------------QAVV--KGSLPHPFALTLFED--ILY 222 (318)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEEE--CSCCSCEEEEEEETT--EEE
T ss_pred EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce------------EEEe--cCCCCCceEEEEeCC--EEE
Confidence 222233356789999998776677767788999999864111 1111 122334566776533 366
Q ss_pred EEEeCCCcEEEEeCCCcc
Q 015484 376 SSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 376 ~s~~~dg~i~iw~~~~~~ 393 (406)
.+-...+.|..++..++.
T Consensus 223 wtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 223 WTDWSTHSILACNKYTGE 240 (318)
T ss_dssp EEETTTTEEEEEETTTCC
T ss_pred EEecCCCeEEEEECCCCC
Confidence 666667788888876553
No 251
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.53 E-value=1.2e-05 Score=67.80 Aligned_cols=192 Identities=11% Similarity=0.085 Sum_probs=119.9
Q ss_pred eeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC
Q 015484 169 GYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN 248 (406)
Q Consensus 169 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~ 248 (406)
..++.|+. +. +..+.+.+|.|+++|+.+++....+ +.. ...-..+++. ++.+++..-.++.+.+||..+.
T Consensus 57 tqGL~~~~-~~-Ly~stG~~g~v~~iD~~Tgkv~~~~-----l~~-~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl 126 (268)
T 3nok_A 57 TQGLVFHQ-GH-FFESTGHQGTLRQLSLESAQPVWME-----RLG-NIFAEGLASD--GERLYQLTWTEGLLFTWSGMPP 126 (268)
T ss_dssp EEEEEEET-TE-EEEEETTTTEEEECCSSCSSCSEEE-----ECT-TCCEEEEEEC--SSCEEEEESSSCEEEEEETTTT
T ss_pred cceEEEEC-CE-EEEEcCCCCEEEEEECCCCcEEeEE-----CCC-CcceeEEEEe--CCEEEEEEccCCEEEEEECCcC
Confidence 46888874 44 7888888999999999998654332 111 1112334544 5788878778999999999999
Q ss_pred cccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC--CC---CCeEEEEEcCCCCCEEEEEeC
Q 015484 249 QTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS--HT---EEVFQVEWDPNHETVLASSAD 323 (406)
Q Consensus 249 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--h~---~~v~~i~~~p~~~~~l~s~~~ 323 (406)
+.+.++..... -..++ +++. .|+.+..++.|.++|..+.+. +..+.. +. ..++.+.|. +|+ +.+..-.
T Consensus 127 ~~~~ti~~~~e-GwGLt--~Dg~-~L~vSdGs~~l~~iDp~T~~v-~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~ 199 (268)
T 3nok_A 127 QRERTTRYSGE-GWGLC--YWNG-KLVRSDGGTMLTFHEPDGFAL-VGAVQVKLRGQPVELINELECA-NGV-IYANIWH 199 (268)
T ss_dssp EEEEEEECSSC-CCCEE--EETT-EEEEECSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TTE-EEEEETT
T ss_pred cEEEEEeCCCc-eeEEe--cCCC-EEEEECCCCEEEEEcCCCCeE-EEEEEeCCCCcccccccccEEe-CCE-EEEEECC
Confidence 99888864322 23444 4566 455555688999999988664 444432 11 246778887 564 6666657
Q ss_pred CCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEE
Q 015484 324 DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSV 378 (406)
Q Consensus 324 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~ 378 (406)
+..|.+.|..+....... ......+........-....+.|+|+|+++.+++||
T Consensus 200 s~~I~vIDp~TG~V~~~I-dl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 200 SSDVLEIDPATGTVVGVI-DASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp CSEEEEECTTTCBEEEEE-ECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCeEEEEeCCCCcEEEEE-ECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 889999998874321110 000000000000001124578899999888777776
No 252
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.52 E-value=9.3e-06 Score=79.63 Aligned_cols=201 Identities=11% Similarity=0.078 Sum_probs=121.7
Q ss_pred eEEEecCCCCCeEEEecCCC-------------------eEEEEeCCCccCCceeeeeeeeeccC-------ccEEEEEe
Q 015484 170 YGLSWSPFKEGYLVSGSHDN-------------------KICLWDVSALAQDKVIDAMHVYEAHE-------SVVEDVSW 223 (406)
Q Consensus 170 ~~l~~~~~~~~~l~s~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~-------~~i~~i~~ 223 (406)
..+++++++. .++.+..++ .|..+|..+++....++. ..|. ....-+..
T Consensus 246 ~~~~~d~~~~-~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~----~~~d~wd~~~~~~p~l~~~ 320 (677)
T 1kb0_A 246 DSMTFDAELN-TMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQE----TPGDNWDYTSTQPMILADI 320 (677)
T ss_dssp SCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES----STTCCSCCCCCSCCEEEEE
T ss_pred cceeEcCCCC-EEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEec----CCCcccccccCCCcEEEec
Confidence 3577888777 777776654 599999988764332211 1111 11111222
Q ss_pred eCCCC---CEEEEEecCCcEEEEECCCCcccccccccC-----------CCe------------------------eEEE
Q 015484 224 HLKNE---NLFGSAGDDCQLMIWDLRTNQTQQRVKAHE-----------KEV------------------------NYLS 265 (406)
Q Consensus 224 ~p~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------~~v------------------------~~i~ 265 (406)
.. ++ ..++.++.+|.++++|.++++.+..+.... .++ ..++
T Consensus 321 ~~-dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a 399 (677)
T 1kb0_A 321 KI-AGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMS 399 (677)
T ss_dssp EE-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCE
T ss_pred cc-CCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCce
Confidence 22 33 678889999999999999998765442110 001 1567
Q ss_pred ecCCCCcEEEEEeC-------------------------------------------CCcEEEEeCCCCCCCcEEecCCC
Q 015484 266 FNPYNEWVLATASS-------------------------------------------DTTVALFDMRKMTVPLHILSSHT 302 (406)
Q Consensus 266 ~~~~~~~~l~~~~~-------------------------------------------dg~i~vwd~~~~~~~~~~~~~h~ 302 (406)
++|++. ++++... .|.|..||+.+++. +-... +.
T Consensus 400 ~dp~~~-~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~-~W~~~-~~ 476 (677)
T 1kb0_A 400 FNPQTG-LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA-AWSVE-HV 476 (677)
T ss_dssp EETTTT-EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE-EEEEE-ES
T ss_pred EcCCCC-EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE-EeecC-CC
Confidence 888887 5655432 26799999988764 33332 23
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEec-CCCCCeeeEEeCCCCCcEEEEEeC-
Q 015484 303 EEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG-GHKAKISDFSWNKNDPWVISSVAD- 380 (406)
Q Consensus 303 ~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~~l~s~~~- 380 (406)
.++....+...+. +++.++.||.+++||..+. +.+..+. ++.....-+.|..+|+.+++..+.
T Consensus 477 ~~~~~g~~~~~g~-~v~~g~~dg~l~a~D~~tG--------------~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~ 541 (677)
T 1kb0_A 477 SPWNGGTLTTAGN-VVFQGTADGRLVAYHAATG--------------EKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGW 541 (677)
T ss_dssp SSCCCCEEEETTT-EEEEECTTSEEEEEETTTC--------------CEEEEEECSSCCCSCCEEEEETTEEEEEEEECC
T ss_pred CCCcCcceEeCCC-EEEEECCCCcEEEEECCCC--------------ceeeeeeCCCCcccCCEEEEeCCEEEEEEeccC
Confidence 3344445555665 5778899999999999873 3344433 222233445666777644444322
Q ss_pred ---------------CCcEEEEeCCCccc
Q 015484 381 ---------------DNTVQVWQMTDSIY 394 (406)
Q Consensus 381 ---------------dg~i~iw~~~~~~~ 394 (406)
.+.+..|.+.....
T Consensus 542 ~~~~~~~~~~~~~~~~~~l~~f~l~~~a~ 570 (677)
T 1kb0_A 542 GGVYGLAARATERQGPGTVYTFVVGGKAR 570 (677)
T ss_dssp CHHHHHHCCSCSCCCCCEEEEEEETCBCC
T ss_pred CccccccccccccCCCCeEEEEecccccc
Confidence 46788888875443
No 253
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.49 E-value=0.00021 Score=60.41 Aligned_cols=204 Identities=8% Similarity=0.133 Sum_probs=126.7
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee-CCCCCeeEEEecCCCCCeEEEecCCCeE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK-GHDKEGYGLSWSPFKEGYLVSGSHDNKI 191 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i 191 (406)
+-.+.+..++|.|++..++++...++.|...|... .. ...+. +-....-+|++.+++. ++++.-.++.+
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g-~v--------~~~i~l~g~~D~EGIa~~~~g~-~~vs~E~~~~l 93 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNG-DL--------IRTIPLDFVKDLETIEYIGDNQ-FVISDERDYAI 93 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTC-CE--------EEEEECSSCSSEEEEEECSTTE-EEEEETTTTEE
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCC-CE--------EEEEecCCCCChHHeEEeCCCE-EEEEECCCCcE
Confidence 34568999999998767777788888899888873 11 22221 1124567889987776 66666667889
Q ss_pred EEEeCCCccCCceeeeeee-e--eccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCC---Ccccccc-------cccC
Q 015484 192 CLWDVSALAQDKVIDAMHV-Y--EAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT---NQTQQRV-------KAHE 258 (406)
Q Consensus 192 ~iwd~~~~~~~~~~~~~~~-~--~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~-------~~~~ 258 (406)
.++++.............. + .........++|+|.++.+++ +.......+|..+. ...+..+ ....
T Consensus 94 ~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~v-a~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~ 172 (255)
T 3qqz_A 94 YVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWF-FKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTL 172 (255)
T ss_dssp EEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEE-EEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCS
T ss_pred EEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEE-EECcCCceEEEEcccccCCceeeecchhhcccccc
Confidence 9998876542111111110 0 123455789999996555555 44443444444431 1111111 1123
Q ss_pred CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCC---------CCeEEEEEcCCCCCEEEEEeCCCcEEE
Q 015484 259 KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHT---------EEVFQVEWDPNHETVLASSADDRRLMV 329 (406)
Q Consensus 259 ~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~---------~~v~~i~~~p~~~~~l~s~~~dg~i~i 329 (406)
..+.+++++|....+++.....+.|..+|.... ++..+.-.. ...-.|+|.++|. +. ..++-+.+++
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~--~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-ly-IvsE~n~~y~ 248 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE--VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IY-IVSEPNRFYR 248 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EE-EEETTTEEEE
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC--EEEEEEcCCccCCcccccCCCCeeEECCCCC-EE-EEcCCceEEE
Confidence 467899999988767777777889999997743 243333221 3678999999996 44 4466666665
Q ss_pred Ee
Q 015484 330 WD 331 (406)
Q Consensus 330 wd 331 (406)
+.
T Consensus 249 f~ 250 (255)
T 3qqz_A 249 FT 250 (255)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 254
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.47 E-value=5e-06 Score=78.23 Aligned_cols=202 Identities=11% Similarity=0.089 Sum_probs=128.6
Q ss_pred CCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEe-e-CCCCCEEEEEe------------------c
Q 015484 177 FKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSW-H-LKNENLFGSAG------------------D 236 (406)
Q Consensus 177 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~-~-p~~~~~l~~~~------------------~ 236 (406)
+|+..+++...++.|.+.|+.+.+..+.+ .+. ....+..+++ . | ++.++++++ .
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii----~ip-~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~ 173 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAIL----EIP-NAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANY 173 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEE----ECS-SCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEE----eCC-CCCCCcceeeeecC-CCcEEEEecccccccCCCCccccccccc
Confidence 66634555555778999999986543222 111 2245677777 4 7 455555553 3
Q ss_pred CCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCC-----------------------------------
Q 015484 237 DCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT----------------------------------- 281 (406)
Q Consensus 237 dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg----------------------------------- 281 (406)
++.+.+.|..+.+...++.... ....++++|+|. ++++.+.+.
T Consensus 174 ~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk-~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~ 251 (595)
T 1fwx_A 174 VNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGK-WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ 251 (595)
T ss_dssp EEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSS-EEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred CceEEEEECCCCeEEEEEEeCC-CccceEECCCCC-EEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCee
Confidence 5679999999988777765323 345678999998 444444332
Q ss_pred ---cEEEEeCCC--CCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEec
Q 015484 282 ---TVALFDMRK--MTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG 356 (406)
Q Consensus 282 ---~i~vwd~~~--~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (406)
.|.+.|.++ ....+..+.. .....++.++|+|+++++++..+.+|.++|+.+....... .. +..........
T Consensus 252 ~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~-~l-~~~~~v~~~v~ 328 (595)
T 1fwx_A 252 ELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYE-NA-DPRSAVVAEPE 328 (595)
T ss_dssp EETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHS-CC-CGGGGEEECCB
T ss_pred EECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccccc-cc-CcccceEEEcC
Confidence 477777776 3321333332 2356789999999988888888999999999863210000 00 00011222222
Q ss_pred CCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 357 GHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 357 ~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
-......++|+|+| +..++.-.|+.|.+|++..
T Consensus 329 -vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 329 -LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp -CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred -CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence 23457889999999 5788888999999999977
No 255
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.47 E-value=2.1e-05 Score=65.64 Aligned_cols=198 Identities=12% Similarity=0.086 Sum_probs=118.5
Q ss_pred CCCC--CeeEEEecCCCCCeEEEecCCC--eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCc
Q 015484 164 GHDK--EGYGLSWSPFKEGYLVSGSHDN--KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQ 239 (406)
Q Consensus 164 ~h~~--~v~~l~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~ 239 (406)
.|.. -...+.|++ +. ++.+.+.+| .|+.+|+.+++....+. +.. ...-..++.. ++++++..-.++.
T Consensus 16 phd~~~ftqGL~~~~-~~-LyestG~~g~S~v~~vD~~tgkv~~~~~----l~~-~~fgeGi~~~--~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLR-GH-LYESTGETGRSSVRKVDLETGRILQRAE----VPP-PYFGAGIVAW--RDRLIQLTWRNHE 86 (243)
T ss_dssp ECCTTCCEEEEEEET-TE-EEEEECCTTSCEEEEEETTTCCEEEEEE----CCT-TCCEEEEEEE--TTEEEEEESSSSE
T ss_pred CCCCccccccEEEEC-CE-EEEECCCCCCceEEEEECCCCCEEEEEe----CCC-CcceeEEEEe--CCEEEEEEeeCCE
Confidence 4553 355899986 44 666666654 89999999875432221 111 1111334444 5777777778999
Q ss_pred EEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCC-----CCeEEEEEcCCC
Q 015484 240 LMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHT-----EEVFQVEWDPNH 314 (406)
Q Consensus 240 i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~-----~~v~~i~~~p~~ 314 (406)
+.+||..+.+.+.++..... -..++ +++..++++ ..++.|.++|..+.+. +..+.... ..++.+.|. ++
T Consensus 87 v~v~D~~tl~~~~ti~~~~~-Gwglt--~dg~~L~vS-dgs~~l~~iDp~t~~~-~~~I~V~~~g~~~~~lNeLe~~-~G 160 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYPGE-GWALT--SDDSHLYMS-DGTAVIRKLDPDTLQQ-VGSIKVTAGGRPLDNLNELEWV-NG 160 (243)
T ss_dssp EEEEETTTTEEEEEEECSSC-CCEEE--ECSSCEEEE-CSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TT
T ss_pred EEEEECCcCcEEEEEeCCCC-ceEEe--eCCCEEEEE-CCCCeEEEEeCCCCeE-EEEEEEccCCcccccceeeEEe-CC
Confidence 99999999999888864332 24455 445534554 4578999999998664 44443311 356777776 45
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEE
Q 015484 315 ETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSV 378 (406)
Q Consensus 315 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~ 378 (406)
+ +.+..-.+..|.+.|..+....... ......+.............+.|+++|++..++++|
T Consensus 161 ~-lyanvw~s~~I~vIDp~tG~V~~~i-dl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 161 E-LLANVWLTSRIARIDPASGKVVAWI-DLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp E-EEEEETTTTEEEEECTTTCBEEEEE-ECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred E-EEEEECCCCeEEEEECCCCCEEEEE-ECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 3 5666656789999999874321111 000000000000001223578899999888677765
No 256
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.45 E-value=0.00031 Score=70.41 Aligned_cols=253 Identities=8% Similarity=0.027 Sum_probs=148.7
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
..|.++...+++. |..|+.+| |.+|+.......... ..+.....-....|.++...++|. |..|+.++-|..|+
T Consensus 263 ~~i~~i~~d~~g~--lWigt~~G-l~~~~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~D~~g~--lWigt~~~Gl~~~~ 336 (795)
T 4a2l_A 263 NYIRSLAMDSQNR--LWIGTFND-LNIYHEGTDSFASYS-SNPVENGSLSQRSVRSIFMDSQGG--MWLGTYFGGLNYYH 336 (795)
T ss_dssp SBEEEEEECTTSC--EEEEESSC-EEEEETTTTEEEEEC-CCTTSTTSCSSSCEEEEEECTTSC--EEEEESSSCEEEEC
T ss_pred CeEEEEEEcCCCC--EEEEeCCh-hheEcCCCCeEEEEe-cCCCCCCCCCCCcEEEEEEeCCcC--EEEEECCCCeEEeC
Confidence 5689998888874 44455555 888887653211000 000000011235689998887765 67777778899998
Q ss_pred CCCccCCceeeeeee-eeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccc--------ccCCCeeEEEe
Q 015484 196 VSALAQDKVIDAMHV-YEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK--------AHEKEVNYLSF 266 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~-~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~v~~i~~ 266 (406)
....... .+..... ..-....|.++...+ ++.+. .|+.++.|..||..++....... .....|.++..
T Consensus 337 ~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~-~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~ 413 (795)
T 4a2l_A 337 PIRNRFK-NIRNIPYKNSLSDNVVSCIVEDK-DKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYV 413 (795)
T ss_dssp GGGGSSE-EECCCTTSSSCSCSSEEEEEECT-TSCEE-EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEE
T ss_pred CCcccce-EEcCCCCCCCCCCCeeEEEEECC-CCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEE
Confidence 7654221 1100000 001234688888876 45544 57777789999987665422211 12356889988
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec-----CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccc
Q 015484 267 NPYNEWVLATASSDTTVALFDMRKMTVPLHILS-----SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE 341 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 341 (406)
.+++. +|..|+.++-|..||..+.. ...+. .+...|.++...+++. |..|+. +-+.+||.....-. ..
T Consensus 414 d~~g~-~lWigt~~~Gl~~~d~~~~~--~~~~~~~~~~l~~~~v~~i~~d~~g~--lwigt~-~Gl~~~~~~~~~~~-~~ 486 (795)
T 4a2l_A 414 DEKKS-LVYIGTHAGGLSILHRNSGQ--VENFNQRNSQLVNENVYAILPDGEGN--LWLGTL-SALVRFNPEQRSFT-TI 486 (795)
T ss_dssp ETTTT-EEEEEETTTEEEEEETTTCC--EEEECTTTSCCSCSCEEEEEECSSSC--EEEEES-SCEEEEETTTTEEE-EC
T ss_pred cCCCC-EEEEEeCcCceeEEeCCCCc--EEEeecCCCCcCCCeeEEEEECCCCC--EEEEec-CceeEEeCCCCeEE-Ec
Confidence 88776 57778887789999987643 33332 2345799999998886 344444 45888887652110 00
Q ss_pred ccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 342 LDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 342 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.....+. .-....|.++...++|. +.+.+ . +.|..|+..++.+
T Consensus 487 -~~~~~~~------~~~~~~i~~i~~d~~g~-lWigt-~-~Gl~~~~~~~~~~ 529 (795)
T 4a2l_A 487 -EKEKDGT------PVVSKQITTLFRDSHKR-LWIGG-E-EGLSVFKQEGLDI 529 (795)
T ss_dssp -CBCTTCC------BCCCCCEEEEEECTTCC-EEEEE-S-SCEEEEEEETTEE
T ss_pred -ccccccc------ccCCceEEEEEECCCCC-EEEEe-C-CceEEEeCCCCeE
Confidence 0000000 01235688999999998 45444 3 4588888766543
No 257
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.44 E-value=0.00021 Score=70.96 Aligned_cols=195 Identities=12% Similarity=0.141 Sum_probs=109.1
Q ss_pred ceeEEEEc-CCCCcEEEEEeCCC----eEEEEeCCCc-cccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC--
Q 015484 117 EVNRARCM-PQKPNLVGTKTSSC----EVYVFDCAKQ-AEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD-- 188 (406)
Q Consensus 117 ~v~~i~~~-p~~~~~l~~~~~dg----~i~iw~~~~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-- 188 (406)
.+...+|+ |+|..++.+...+| +|+++|+.++ ... + ..+.. ...+++|+|+++ .|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l------~-~~~~~---~~~~~~WspDg~-~l~y~~~d~~ 243 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI------A-DKVSG---TNGEIVWGPDHT-SLFYVTKDET 243 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC------C-CCEEE---ECSCCEECSSTT-EEEEEEECTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC------C-ccccC---ceeeEEEecCCC-EEEEEEECCC
Confidence 67889999 99954443443333 5999999874 210 0 11111 134789999998 55555544
Q ss_pred ---CeEEEEeCCCccCCceeeeeeeee-ccCccEEEEEeeCCCCCEEEEEe---cCCcEEEEECCCCcc-c--ccc-ccc
Q 015484 189 ---NKICLWDVSALAQDKVIDAMHVYE-AHESVVEDVSWHLKNENLFGSAG---DDCQLMIWDLRTNQT-Q--QRV-KAH 257 (406)
Q Consensus 189 ---g~i~iwd~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~p~~~~~l~~~~---~dg~i~i~d~~~~~~-~--~~~-~~~ 257 (406)
..|.++++.++..... ..+. ........+.|+|+ ++.|+... ....|.++|+.++.. . ..+ ...
T Consensus 244 ~~~~~v~~~~lgt~~~~~~----lv~~~~~~~~~~~~~~SpD-g~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~ 318 (751)
T 2xe4_A 244 LRENKVWRHVMGKLQSEDV----CLYEEHNPLFSAFMYKAAD-TNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPRE 318 (751)
T ss_dssp CCEEEEEEEETTSCGGGCE----EEEECCCTTCEEEEEECTT-SSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCC
T ss_pred CCCCEEEEEECCCCchhcE----EEEecCCCceEEEEEECCC-CCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCC
Confidence 3577888876532111 1111 12234567899995 55554433 234688889887531 2 223 333
Q ss_pred CCCeeEEEecCCCCcEEEEEeCC--C--cEEEEeCCCCCCCcEE-ecCCCC--CeEEEEEcCCCCCEEEEEeCCCcEEEE
Q 015484 258 EKEVNYLSFNPYNEWVLATASSD--T--TVALFDMRKMTVPLHI-LSSHTE--EVFQVEWDPNHETVLASSADDRRLMVW 330 (406)
Q Consensus 258 ~~~v~~i~~~~~~~~~l~~~~~d--g--~i~vwd~~~~~~~~~~-~~~h~~--~v~~i~~~p~~~~~l~s~~~dg~i~iw 330 (406)
.....++.|+. +..+++....+ + .|..+|+.+... ... +..+.. .+..+.+. ++.++++...++..+||
T Consensus 319 ~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~-~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 319 KGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSD-WSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp TTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTC-CCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEE
T ss_pred CCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCccc-ceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEE
Confidence 45556666654 44355555544 2 577777764222 222 333333 34555554 55678888888875554
Q ss_pred e
Q 015484 331 D 331 (406)
Q Consensus 331 d 331 (406)
-
T Consensus 395 ~ 395 (751)
T 2xe4_A 395 T 395 (751)
T ss_dssp E
T ss_pred E
Confidence 3
No 258
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.44 E-value=0.00014 Score=65.87 Aligned_cols=226 Identities=9% Similarity=0.031 Sum_probs=127.4
Q ss_pred EEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeee
Q 015484 130 LVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMH 209 (406)
Q Consensus 130 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 209 (406)
.+.+++.++.|..+|..++.. ................. +. .++.++.++.|..+|..+++.........
T Consensus 105 ~v~v~~~~g~l~a~d~~tG~~--------~W~~~~~~~~~~~p~~~--~~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~ 173 (376)
T 3q7m_A 105 HVYIGSEKAQVYALNTSDGTV--------AWQTKVAGEALSRPVVS--DG-LVLIHTSNGQLQALNEADGAVKWTVNLDM 173 (376)
T ss_dssp EEEEEETTSEEEEEETTTCCE--------EEEEECSSCCCSCCEEE--TT-EEEEECTTSEEEEEETTTCCEEEEEECCC
T ss_pred EEEEEcCCCEEEEEECCCCCE--------EEEEeCCCceEcCCEEE--CC-EEEEEcCCCeEEEEECCCCcEEEEEeCCC
Confidence 577788899999999987432 22222221111111222 34 78888899999999998875432221100
Q ss_pred eeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCC----eeE---EEecC--CCCcEEEEEeCC
Q 015484 210 VYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKE----VNY---LSFNP--YNEWVLATASSD 280 (406)
Q Consensus 210 ~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----v~~---i~~~~--~~~~~l~~~~~d 280 (406)
.... .......... +..++.++.++.|..+|.++++.+......... +.. +...| .+. .+..++.+
T Consensus 174 ~~~~-~~~~~~~~~~---~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~v~~~~~~ 248 (376)
T 3q7m_A 174 PSLS-LRGESAPTTA---FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNG-VVFALAYN 248 (376)
T ss_dssp ------CCCCCCEEE---TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETT-EEEEECTT
T ss_pred Ccee-ecCCCCcEEE---CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECC-EEEEEecC
Confidence 0000 0000112222 345667888999999999998876554321100 000 10111 134 67778889
Q ss_pred CcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEec-CCC
Q 015484 281 TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG-GHK 359 (406)
Q Consensus 281 g~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~h~ 359 (406)
+.+..+|.++++. +.... ......+... +. .+..++.++.|..+|..+.. .+.... ...
T Consensus 249 g~l~~~d~~tG~~-~w~~~--~~~~~~~~~~--~~-~l~~~~~~g~l~~~d~~tG~--------------~~w~~~~~~~ 308 (376)
T 3q7m_A 249 GNLTALDLRSGQI-MWKRE--LGSVNDFIVD--GN-RIYLVDQNDRVMALTIDGGV--------------TLWTQSDLLH 308 (376)
T ss_dssp SCEEEEETTTCCE-EEEEC--CCCEEEEEEE--TT-EEEEEETTCCEEEEETTTCC--------------EEEEECTTTT
T ss_pred cEEEEEECCCCcE-Eeecc--CCCCCCceEE--CC-EEEEEcCCCeEEEEECCCCc--------------EEEeecccCC
Confidence 9999999988764 33332 2334455443 33 47778889999999988733 222222 111
Q ss_pred CCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 360 AKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 360 ~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
..+...... +. .|+.++.+|.|.++|..++..
T Consensus 309 ~~~~~~~~~--~~-~l~v~~~~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 309 RLLTSPVLY--NG-NLVVGDSEGYLHWINVEDGRF 340 (376)
T ss_dssp SCCCCCEEE--TT-EEEEECTTSEEEEEETTTCCE
T ss_pred CcccCCEEE--CC-EEEEEeCCCeEEEEECCCCcE
Confidence 122222332 23 467778899999999988764
No 259
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.43 E-value=0.00065 Score=59.84 Aligned_cols=210 Identities=8% Similarity=-0.018 Sum_probs=130.0
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeE
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKI 191 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 191 (406)
+..-..+..++|.+.+..++.+-...+.|+.+++...... ......+...-....++++.+.+.++.++-...+.|
T Consensus 26 ~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~----~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I 101 (316)
T 1ijq_A 26 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV----SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTV 101 (316)
T ss_dssp ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred hcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC----cccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEE
Confidence 3445678899999977677777777889999998751100 001111222223457888886565355666678899
Q ss_pred EEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC-CcEEEEECCCCcccccc-cccCCCeeEEEecCC
Q 015484 192 CLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD-CQLMIWDLRTNQTQQRV-KAHEKEVNYLSFNPY 269 (406)
Q Consensus 192 ~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~-~~~~~~v~~i~~~~~ 269 (406)
.+.++..... . ............++++|.++.++++.... +.|...++... ....+ ...-...+.++++|+
T Consensus 102 ~~~~~~g~~~----~--~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gla~d~~ 174 (316)
T 1ijq_A 102 SVADTKGVKR----K--TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLL 174 (316)
T ss_dssp EEEETTSSSE----E--EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETT
T ss_pred EEEeCCCCce----E--EEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECCCCCceEEEEecc
Confidence 9999865321 1 11122234678999998667666665443 78888887643 22222 223345789999998
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCcEEec--CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 015484 270 NEWVLATASSDTTVALFDMRKMTVPLHILS--SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI 335 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~ 335 (406)
+..++++-+..+.|..+|+..... ..... ..-.....+++.. + .++++-...+.|..++..+.
T Consensus 175 ~~~lY~~D~~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~~-~-~ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 175 SGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFE-D-KVFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEET-T-EEEEEETTTTEEEEEETTTC
T ss_pred CCEEEEEECCCCeEEEEecCCCce-EEEeecCCccCCcEEEEEEC-C-EEEEEECCCCeEEEEeCCCC
Confidence 775666666677999999875332 22222 1234567888853 3 56777777889999987543
No 260
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.40 E-value=3.4e-05 Score=75.80 Aligned_cols=184 Identities=9% Similarity=0.076 Sum_probs=109.7
Q ss_pred EEEecCCCCCeEEEecCCCe-------------------EEEEeCCCccCCceeeeeeeeeccC-------ccEEEEEee
Q 015484 171 GLSWSPFKEGYLVSGSHDNK-------------------ICLWDVSALAQDKVIDAMHVYEAHE-------SVVEDVSWH 224 (406)
Q Consensus 171 ~l~~~~~~~~~l~s~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~~~~~-------~~i~~i~~~ 224 (406)
.+++++.+. +++.+..++. |..+|..+++....++. ..|. .++......
T Consensus 239 ~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~----~~~d~wd~~~~~~~~l~d~~ 313 (689)
T 1yiq_A 239 SFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQT----TPGDAWDYTATQHMILAELP 313 (689)
T ss_dssp CEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEES----STTCCSCCCCCSCEEEEEEE
T ss_pred ceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeec----CCcccccccCCCCcEEEeec
Confidence 577888776 8888887764 99999998865332211 1111 111111111
Q ss_pred CCCC---CEEEEEecCCcEEEEECCCCcccccccccC---------------------------------------CCee
Q 015484 225 LKNE---NLFGSAGDDCQLMIWDLRTNQTQQRVKAHE---------------------------------------KEVN 262 (406)
Q Consensus 225 p~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------------------------------------~~v~ 262 (406)
. ++ ..++.++.+|.++++|.++++.+....... ..-.
T Consensus 314 ~-~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~ 392 (689)
T 1yiq_A 314 I-DGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQ 392 (689)
T ss_dssp E-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSS
T ss_pred c-CCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCC
Confidence 1 23 368888999999999999998763221000 0012
Q ss_pred EEEecCCCCcEEEEEeC---------------------------------------------CCcEEEEeCCCCCCCcEE
Q 015484 263 YLSFNPYNEWVLATASS---------------------------------------------DTTVALFDMRKMTVPLHI 297 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~---------------------------------------------dg~i~vwd~~~~~~~~~~ 297 (406)
.++++|+.. ++++... +|.|..||+.+++. +-.
T Consensus 393 ~~a~dp~~~-~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~-~W~ 470 (689)
T 1yiq_A 393 PMSYNPDTG-LVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQA-AWE 470 (689)
T ss_dssp CCEEETTTT-EEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEE-EEE
T ss_pred cceECCCCC-EEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCe-EeE
Confidence 367888877 5555422 36799999998764 333
Q ss_pred ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCC-CCCeeeEEeCCCCCcEEE
Q 015484 298 LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH-KAKISDFSWNKNDPWVIS 376 (406)
Q Consensus 298 ~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~~l~ 376 (406)
...+ .++..-.+...+. +++.++.||.++.||.++. +.+..+... .....-+.|..+|+.+++
T Consensus 471 ~~~~-~~~~~g~~~tagg-lvf~gt~dg~l~a~D~~tG--------------~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 471 VPYV-TIFNGGTLSTAGN-LVFEGSADGRVIAYAADTG--------------EKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp EEES-SSCCCCEEEETTT-EEEEECTTSEEEEEETTTC--------------CEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred ccCC-CCccCccceECCC-EEEEECCCCcEEEEECCCC--------------ccceeeeCCCCcccCceEEEECCEEEEE
Confidence 3332 2233334444554 7888999999999999883 444444322 222344667778874444
Q ss_pred EE
Q 015484 377 SV 378 (406)
Q Consensus 377 s~ 378 (406)
..
T Consensus 535 ~~ 536 (689)
T 1yiq_A 535 FM 536 (689)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 261
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.39 E-value=1.1e-05 Score=72.62 Aligned_cols=192 Identities=8% Similarity=-0.043 Sum_probs=115.0
Q ss_pred ceeEEEEcCCCCcEEEEEeC--CCeEEE--EeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 117 EVNRARCMPQKPNLVGTKTS--SCEVYV--FDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~--dg~i~i--w~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
....++++|+++. ++++.. +..|.+ +|..+ ...+... + ++...|++...+++.+.||.+.
T Consensus 125 ~P~~ia~SpDGk~-lyVan~~~~~~v~V~~iD~~t-----------v~~i~v~-~---~~~~~p~g~~~~~~~~~dg~~~ 188 (368)
T 1mda_H 125 RVHIIGNCASSAC-LLFFLFGSSAAAGLSVPGASD-----------DQLTKSA-S---CFHIHPGAAATHYLGSCPASLA 188 (368)
T ss_dssp CTTSEEECTTSSC-EEEEECSSSCEEEEEETTTEE-----------EEEEECS-S---CCCCEEEETTEEECCCCTTSCE
T ss_pred CcceEEEcCCCCE-EEEEccCCCCeEEEEEEchhh-----------ceEEECC-C---ceEEccCCCeEEEEEcCCCCEE
Confidence 4678999999965 444443 467888 88865 1122211 1 1223455655677777889988
Q ss_pred EEeCCC-----ccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCc--ccccccc---------
Q 015484 193 LWDVSA-----LAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ--TQQRVKA--------- 256 (406)
Q Consensus 193 iwd~~~-----~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~--------- 256 (406)
+.++.+ ++...... ..+.....+. . .+.++.++ ..+. +.+.+.|+.... .+..+..
T Consensus 189 ~vd~~~~~~~~~~v~~~~t--~~i~vg~~P~---~-~~~~~~~~-~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~ 260 (368)
T 1mda_H 189 ASDLAAAPAAAGIVGAQCT--GAQNCSSQAA---Q-ANYPGMLV-WAVA-SSILQGDIPAAGATMKAAIDGNESGRKADN 260 (368)
T ss_dssp EEECCSSCCCCEECCCCSC--TTSCBCSCCE---E-ETTTTEEE-ECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTT
T ss_pred EEECccccccCCeEEEEee--eeeeCCCCcc---c-cccCCEEE-EEcC-CEEEEEECCCCcceEEEEEEeccccccccc
Confidence 888876 22110000 0011112333 3 55344444 4455 899999986532 1222210
Q ss_pred -cCCCeeEEEecCCCCcEEEEEe---C-----CCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEe-CCCc
Q 015484 257 -HEKEVNYLSFNPYNEWVLATAS---S-----DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSA-DDRR 326 (406)
Q Consensus 257 -~~~~v~~i~~~~~~~~~l~~~~---~-----dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~-~dg~ 326 (406)
.......++++|++..++++.. . ++.+.++|+.+.+. +..+... ....+|+|+|+++.++++.. .++.
T Consensus 261 ~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v-v~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~ 338 (368)
T 1mda_H 261 FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT-SGPISNG-HDSDAIIAAQDGASDNYANSAGTEV 338 (368)
T ss_dssp EEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE-EECCEEE-EEECEEEECCSSSCEEEEEETTTTE
T ss_pred cccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeE-EEEEECC-CCcceEEECCCCCEEEEEccCCCCe
Confidence 0111223689999985554433 2 23566999998664 5555432 25889999999987888888 6999
Q ss_pred EEEEeCCC
Q 015484 327 LMVWDLNR 334 (406)
Q Consensus 327 i~iwd~~~ 334 (406)
|.++|+.+
T Consensus 339 VsVID~~t 346 (368)
T 1mda_H 339 LDIYDAAS 346 (368)
T ss_dssp EEEEESSS
T ss_pred EEEEECCC
Confidence 99999987
No 262
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.39 E-value=0.00017 Score=65.31 Aligned_cols=221 Identities=11% Similarity=0.056 Sum_probs=124.7
Q ss_pred EEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCC---------CCCee-EEEecCCCCCeEEEecCCCeEEEEeCCCc
Q 015484 130 LVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGH---------DKEGY-GLSWSPFKEGYLVSGSHDNKICLWDVSAL 199 (406)
Q Consensus 130 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h---------~~~v~-~l~~~~~~~~~l~s~~~dg~i~iwd~~~~ 199 (406)
.+.+++.++.|..+|..++.. ....... ...+. .+.. .+. .++.++.++.|..+|..++
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~--------~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~v~v~~~~g~l~a~d~~tG 123 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKE--------IWSVSLAEKDGWFSKEPALLSGGVTV--SGG-HVYIGSEKAQVYALNTSDG 123 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCE--------EEEEECCC---CCSCCCCCEEEEEEE--ETT-EEEEEETTSEEEEEETTTC
T ss_pred EEEEEcCCCeEEEEEccCCce--------eeeecCccccccccccCcccccCceE--eCC-EEEEEcCCCEEEEEECCCC
Confidence 566777788999999877433 2122211 12222 2222 244 7888889999999999887
Q ss_pred cCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCe-----eEEEecCCCCcEE
Q 015484 200 AQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEV-----NYLSFNPYNEWVL 274 (406)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v-----~~i~~~~~~~~~l 274 (406)
+..... ............. +..++.++.++.|..+|.++++.+.......... ...... +. .+
T Consensus 124 ~~~W~~------~~~~~~~~~p~~~---~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~-~v 191 (376)
T 3q7m_A 124 TVAWQT------KVAGEALSRPVVS---DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FG-AA 191 (376)
T ss_dssp CEEEEE------ECSSCCCSCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TT-EE
T ss_pred CEEEEE------eCCCceEcCCEEE---CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CC-EE
Confidence 543221 1111111112222 3466678889999999999998766553322111 112222 33 67
Q ss_pred EEEeCCCcEEEEeCCCCCCCcEEecCCCC-------CeEEEEEcC--CCCCEEEEEeCCCcEEEEeCCCCCccccccccc
Q 015484 275 ATASSDTTVALFDMRKMTVPLHILSSHTE-------EVFQVEWDP--NHETVLASSADDRRLMVWDLNRIGDEQLELDAE 345 (406)
Q Consensus 275 ~~~~~dg~i~vwd~~~~~~~~~~~~~h~~-------~v~~i~~~p--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 345 (406)
++++.++.|..+|..+++. +........ .+..+.-.| .+. .+..++.++.+..+|..+..
T Consensus 192 ~~g~~~g~l~~~d~~tG~~-~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~v~~~~~~g~l~~~d~~tG~--------- 260 (376)
T 3q7m_A 192 VVGGDNGRVSAVLMEQGQM-IWQQRISQATGSTEIDRLSDVDTTPVVVNG-VVFALAYNGNLTALDLRSGQ--------- 260 (376)
T ss_dssp EECCTTTEEEEEETTTCCE-EEEEECCC-----------CCCCCCEEETT-EEEEECTTSCEEEEETTTCC---------
T ss_pred EEEcCCCEEEEEECCCCcE-EEEEecccCCCCcccccccccCCCcEEECC-EEEEEecCcEEEEEECCCCc---------
Confidence 7788899999999988664 322221110 000010111 123 47778889999999987632
Q ss_pred CCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 346 DGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 346 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.+.... ......+... +. .+..++.++.|..+|..++..
T Consensus 261 -----~~w~~~--~~~~~~~~~~--~~-~l~~~~~~g~l~~~d~~tG~~ 299 (376)
T 3q7m_A 261 -----IMWKRE--LGSVNDFIVD--GN-RIYLVDQNDRVMALTIDGGVT 299 (376)
T ss_dssp -----EEEEEC--CCCEEEEEEE--TT-EEEEEETTCCEEEEETTTCCE
T ss_pred -----EEeecc--CCCCCCceEE--CC-EEEEEcCCCeEEEEECCCCcE
Confidence 222221 1123333333 33 466667788999999988754
No 263
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.38 E-value=2e-05 Score=77.17 Aligned_cols=249 Identities=9% Similarity=-0.006 Sum_probs=132.1
Q ss_pred eEEEEcC-CCCcEEEEEeCCC-----------eEEEEeCCCccccccCCCCCceeeeC-CCCCeeEEEecCCCCCeEEEe
Q 015484 119 NRARCMP-QKPNLVGTKTSSC-----------EVYVFDCAKQAEKQQDDCDPDLRLKG-HDKEGYGLSWSPFKEGYLVSG 185 (406)
Q Consensus 119 ~~i~~~p-~~~~~l~~~~~dg-----------~i~iw~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~ 185 (406)
..+++.| ++ .+++.|+.++ .+.+||..+. .+.....+.. +.....++++..++. +++.|
T Consensus 189 ~~~av~~~~g-~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~------~w~~~~~~~~~~~~~~~~~~~~~~g~-lyv~G 260 (656)
T 1k3i_A 189 AAAAIEPTSG-RVLMWSSYRNDAFGGSPGGITLTSSWDPSTG------IVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTG 260 (656)
T ss_dssp SEEEEETTTT-EEEEEEECCCTTTCSCCCSEEEEEEECTTTC------CBCCCEEEECSCCCSSCEEEECTTSC-EEEEC
T ss_pred eeEEEEecCC-EEEEEecccccccccCCCCeEEEEEEeCCCC------cEEeCcccCCCCCCccccccCCCCCC-EEEeC
Confidence 4667777 55 6777776542 5889998874 3444444432 333444677777787 88888
Q ss_pred cC-CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe-cC-----CcEEEEECCCCcccccc----
Q 015484 186 SH-DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG-DD-----CQLMIWDLRTNQTQQRV---- 254 (406)
Q Consensus 186 ~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~d-----g~i~i~d~~~~~~~~~~---- 254 (406)
+. ++.+.+||..+.. +..+....... .-.+++..+ ++++++.|+ .+ ..+.+||..+.+....-
T Consensus 261 G~~~~~v~~yd~~t~~----W~~~~~~~~~R-~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~ 334 (656)
T 1k3i_A 261 GNDAKKTSLYDSSSDS----WIPGPDMQVAR-GYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKV 334 (656)
T ss_dssp SSSTTCEEEEEGGGTE----EEECCCCSSCC-SSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCS
T ss_pred CCCCCceEEecCcCCc----eeECCCCCccc-cccceEEec-CCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccc
Confidence 74 5689999987643 21111111111 112334444 678888888 34 46899999876532210
Q ss_pred cccCCCeeEEEecCCCCcEEEEEeCCC---------cEEEEeCCCCCCCcEEecCC---------CCCeEEEEEcCCCCC
Q 015484 255 KAHEKEVNYLSFNPYNEWVLATASSDT---------TVALFDMRKMTVPLHILSSH---------TEEVFQVEWDPNHET 316 (406)
Q Consensus 255 ~~~~~~v~~i~~~~~~~~~l~~~~~dg---------~i~vwd~~~~~~~~~~~~~h---------~~~v~~i~~~p~~~~ 316 (406)
......-....+..++. +++.|+.+| .+..||...... ......+ ...-.++.|...+..
T Consensus 335 ~p~~~~~~~~~~~~~~~-iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w-~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~ 412 (656)
T 1k3i_A 335 NPMLTADKQGLYRSDNH-AWLFGWKKGSVFQAGPSTAMNWYYTSGSGD-VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGK 412 (656)
T ss_dssp GGGCCCCTTGGGTTTCS-CCEEECGGGCEEECCSSSEEEEEECSTTCE-EEEEEECEETTEECCCCBTCEEEEEETTTTE
T ss_pred cccccccccceeecCCc-eEEEECCCCcEEEecCccceeeeecCCcce-eecCCccccccccCCCCCCCceEeccCCCCe
Confidence 00000000011223344 445554443 467888876431 1111111 112345555543445
Q ss_pred EEEEEeCCC-----------cEEEEeCCCCCcccccccccCCCCeeEEEecCCCCC-eeeEEeCCCCCcEEEEEeCC---
Q 015484 317 VLASSADDR-----------RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAK-ISDFSWNKNDPWVISSVADD--- 381 (406)
Q Consensus 317 ~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~s~~~~~~l~s~~~d--- 381 (406)
+++.|+.++ .|.+||.....-. .+..-..+... -.++...|+++ +++.||.+
T Consensus 413 i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~------------~~~~~~mp~~R~~~~~~~l~~g~-i~v~GG~~~~~ 479 (656)
T 1k3i_A 413 ILTFGGSPDYQDSDATTNAHIITLGEPGTSPNT------------VFASNGLYFARTFHTSVVLPDGS-TFITGGQRRGI 479 (656)
T ss_dssp EEEECCBSSSSSSBCCCCEEEEECCSTTSCCEE------------EECTTCCSSCCBSCEEEECTTSC-EEEECCBSBCC
T ss_pred EEEEeCCCCCCCCCcCCcceEEEcCCCCCCCee------------EEccCCCCCCcccCCeEECCCCC-EEEECCcccCc
Confidence 777877542 5667776542110 00000111112 23445667888 78888754
Q ss_pred --------CcEEEEeCCCcccCC
Q 015484 382 --------NTVQVWQMTDSIYRD 396 (406)
Q Consensus 382 --------g~i~iw~~~~~~~~~ 396 (406)
..+.+||+.++.+..
T Consensus 480 ~~~~~~~~~~v~~ydp~t~~W~~ 502 (656)
T 1k3i_A 480 PFEDSTPVFTPEIYVPEQDTFYK 502 (656)
T ss_dssp TTCCCSBCCCCEEEEGGGTEEEE
T ss_pred CcCCCCcccceEEEcCCCCceee
Confidence 468999998776543
No 264
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.37 E-value=0.00051 Score=68.12 Aligned_cols=230 Identities=7% Similarity=0.004 Sum_probs=134.8
Q ss_pred CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCc
Q 015484 137 SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHES 216 (406)
Q Consensus 137 dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 216 (406)
...|+..++.... ...+......+.+|+|.+.+..++++-...+.|+.+++......... ...+.....
T Consensus 403 ~~~Ir~i~l~~~~---------~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~--~~vi~~~l~ 471 (791)
T 3m0c_C 403 RHEVRKMTLDRSE---------YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY--DTVISRDIQ 471 (791)
T ss_dssp BSSEEEECTTSCC---------CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C--EEEECSSCS
T ss_pred ccceeEeeccCCc---------ceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcce--eEEEecCCC
Confidence 3457777776521 22333445667899999866535556666788999988753210011 111222334
Q ss_pred cEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCC-CcEEEEeCCCCCCCc
Q 015484 217 VVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD-TTVALFDMRKMTVPL 295 (406)
Q Consensus 217 ~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~ 295 (406)
....|++.+.+++++++-...+.|.+.++........+.........|+++|.+..++++-... +.|...++..... .
T Consensus 472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~-~ 550 (791)
T 3m0c_C 472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-Y 550 (791)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-E
T ss_pred CcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce-E
Confidence 5677888876778888888889999999875443333333345578999999866455544333 6788888875332 2
Q ss_pred EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEE
Q 015484 296 HILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVI 375 (406)
Q Consensus 296 ~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l 375 (406)
..+...-...+.|++++.+..|+++-...+.|...++..... ..+....+.......|++..+ +++
T Consensus 551 ~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~------------~~v~~~~~~l~~P~glav~~~--~lY 616 (791)
T 3m0c_C 551 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR------------KTILEDEKRLAHPFSLAVFED--KVF 616 (791)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEEEECTTTTSSEEEEEEETT--EEE
T ss_pred EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce------------EEEecCCCccCCCCEEEEeCC--EEE
Confidence 233333457899999988776666666677899998865221 112111112223445555332 355
Q ss_pred EEEeCCCcEEEEeCCCc
Q 015484 376 SSVADDNTVQVWQMTDS 392 (406)
Q Consensus 376 ~s~~~dg~i~iw~~~~~ 392 (406)
++-...+.|...+..++
T Consensus 617 wtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 617 WTDIINEAIFSANRLTG 633 (791)
T ss_dssp EEETTTTEEEEEETTTC
T ss_pred EEECCCCEEEEEeCCCC
Confidence 55555566666664444
No 265
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.37 E-value=0.00074 Score=67.67 Aligned_cols=252 Identities=10% Similarity=-0.007 Sum_probs=147.2
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
..|.++...+++. |-.|+.++-|..|+.......... ..+. .-.-....|.++...++|. |..|+.++-|..|+
T Consensus 310 ~~i~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~~~~-~~~~-~~~l~~~~V~~i~~d~~g~--lWiGt~~~Gl~~~~ 383 (795)
T 4a2l_A 310 RSVRSIFMDSQGG--MWLGTYFGGLNYYHPIRNRFKNIR-NIPY-KNSLSDNVVSCIVEDKDKN--LWIGTNDGGLNLYN 383 (795)
T ss_dssp SCEEEEEECTTSC--EEEEESSSCEEEECGGGGSSEEEC-CCTT-SSSCSCSSEEEEEECTTSC--EEEEESSSCEEEEC
T ss_pred CcEEEEEEeCCcC--EEEEECCCCeEEeCCCcccceEEc-CCCC-CCCCCCCeeEEEEECCCCC--EEEEECCCCeEEEc
Confidence 5688898888873 556777666888886653211000 0000 0001235688998877665 66788887899999
Q ss_pred CCCccCCceeeeee-ee--eccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccc----ccCCCeeEEEecC
Q 015484 196 VSALAQDKVIDAMH-VY--EAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK----AHEKEVNYLSFNP 268 (406)
Q Consensus 196 ~~~~~~~~~~~~~~-~~--~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~v~~i~~~~ 268 (406)
..++.... +.... .. .-....|.++...+ ++.+|..|+.++.|.++|.++++...... .....|.++...+
T Consensus 384 ~~~~~~~~-~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~ 461 (795)
T 4a2l_A 384 PITQRFTS-YTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG 461 (795)
T ss_dssp TTTCCEEE-ECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS
T ss_pred CCCCcEEE-EecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC
Confidence 87643211 10000 00 01235688888876 56634567777779999988765422111 2345789999988
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEec-------CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccc
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILS-------SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE 341 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 341 (406)
++. |..|+.+ .|.+||..+.. ...+. .....|.++...+++. |..|+. +-+..||...... .
T Consensus 462 ~g~--lwigt~~-Gl~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~i~~d~~g~--lWigt~-~Gl~~~~~~~~~~--~- 530 (795)
T 4a2l_A 462 EGN--LWLGTLS-ALVRFNPEQRS--FTTIEKEKDGTPVVSKQITTLFRDSHKR--LWIGGE-EGLSVFKQEGLDI--Q- 530 (795)
T ss_dssp SSC--EEEEESS-CEEEEETTTTE--EEECCBCTTCCBCCCCCEEEEEECTTCC--EEEEES-SCEEEEEEETTEE--E-
T ss_pred CCC--EEEEecC-ceeEEeCCCCe--EEEccccccccccCCceEEEEEECCCCC--EEEEeC-CceEEEeCCCCeE--E-
Confidence 887 4444554 58899987542 22221 1236799999999886 334444 4588888754110 0
Q ss_pred ccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 342 LDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 342 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
...... ........|.++...++|. +.+++. . -|..|+..++.+.
T Consensus 531 ~~~~~~------~~~l~~~~i~~i~~d~~g~-lWigT~-~-Gl~~~d~~~~~~~ 575 (795)
T 4a2l_A 531 KASILP------VSNVTKLFTNCIYEASNGI-IWVGTR-E-GFYCFNEKDKQIK 575 (795)
T ss_dssp ECCCSC------SCGGGGSCEEEEEECTTSC-EEEEES-S-CEEEEETTTTEEE
T ss_pred EecCCC------CCCCCCCeeEEEEECCCCC-EEEEeC-C-CceeECCCCCcEE
Confidence 000000 0011345688999999998 454433 3 5788888776543
No 266
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.36 E-value=0.00091 Score=58.90 Aligned_cols=205 Identities=6% Similarity=-0.038 Sum_probs=130.7
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
..+..+.|.+.+..++.+-...+.|+.++..... .....+...-....++++.+.+..+.++-...+.|.+++
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~-------~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~ 107 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE-------SVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSN 107 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSS-------CCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCC-------ceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEE
Confidence 3577899999765777777778899999987631 111222222234567888875653666666778999999
Q ss_pred CCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe-cCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEE
Q 015484 196 VSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG-DDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVL 274 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 274 (406)
++.... . ............+++.|.++.++.+-. ..+.|...++............-...+.|+++|++..++
T Consensus 108 ~dG~~~-~-----~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY 181 (318)
T 3sov_A 108 LDGSLR-K-----VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLY 181 (318)
T ss_dssp TTSCSC-E-----EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEE
T ss_pred CCCCcE-E-----EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEE
Confidence 875321 1 111123345789999986666665542 357888888764332222222234568899999777566
Q ss_pred EEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCC
Q 015484 275 ATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIG 336 (406)
Q Consensus 275 ~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 336 (406)
++-+..+.|..+|+..... .............+++..+ .++.+-...+.|..++..+..
T Consensus 182 ~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~glav~~~--~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 182 WADAKLNFIHKSNLDGTNR-QAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp EEETTTTEEEEEETTSCSC-EEEECSCCSCEEEEEEETT--EEEEEETTTTEEEEEETTTCC
T ss_pred EEECCCCEEEEEcCCCCce-EEEecCCCCCceEEEEeCC--EEEEEecCCCeEEEEECCCCC
Confidence 6666677999999875332 2223334456778888633 467777778899999986543
No 267
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.35 E-value=0.00015 Score=64.07 Aligned_cols=205 Identities=12% Similarity=0.088 Sum_probs=121.8
Q ss_pred CCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeee--------------eccCccEEEEEeeCCCCCEEE
Q 015484 167 KEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVY--------------EAHESVVEDVSWHLKNENLFG 232 (406)
Q Consensus 167 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--------------~~~~~~i~~i~~~p~~~~~l~ 232 (406)
....+++|.+++. ++.++..++.|..|+...+.. ..+.....+ ......+..+++.+.++++++
T Consensus 19 ~~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI 96 (322)
T ss_dssp SCCCCEECCTTCS-SEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE
T ss_pred CCceEEEEcCCCC-EEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE
Confidence 3456889999876 788888899999998765321 111000000 001134788999863455554
Q ss_pred EEecCCcEEEEECCCCccccccc-----ccCCCeeEEEecC-CCCcEEEEEeC-----------------CCcEEEEeCC
Q 015484 233 SAGDDCQLMIWDLRTNQTQQRVK-----AHEKEVNYLSFNP-YNEWVLATASS-----------------DTTVALFDMR 289 (406)
Q Consensus 233 ~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~v~~i~~~~-~~~~~l~~~~~-----------------dg~i~vwd~~ 289 (406)
+...+.|..+|..++.. ..+. ......+.+++.+ +|. ++++... ++.|..||..
T Consensus 97 -~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 173 (322)
T 2fp8_A 97 -VDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS 173 (322)
T ss_dssp -EETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred -EECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCC
Confidence 44445588888775532 1221 1123467899999 887 5554322 3678888876
Q ss_pred CCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCC
Q 015484 290 KMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNK 369 (406)
Q Consensus 290 ~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 369 (406)
+.. +..+...-...+.|+|+|+++.++++-...+.|.+|++..... +........ .. ...+++++
T Consensus 174 ~~~--~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~---------~~~~~~~~~---~g-P~gi~~d~ 238 (322)
T 2fp8_A 174 TKE--TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK---------GTAEVLVKI---PN-PGNIKRNA 238 (322)
T ss_dssp TTE--EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT---------TCEEEEEEC---SS-EEEEEECT
T ss_pred CCE--EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC---------CccceEEeC---CC-CCCeEECC
Confidence 543 2222111234567999999975566666778999999874210 011222221 22 77899999
Q ss_pred CCCcEEEEEeC----------CCcEEEEeCCCc
Q 015484 370 NDPWVISSVAD----------DNTVQVWQMTDS 392 (406)
Q Consensus 370 ~~~~~l~s~~~----------dg~i~iw~~~~~ 392 (406)
+|. +.++... .+.|..++....
T Consensus 239 ~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G~ 270 (322)
T 2fp8_A 239 DGH-FWVSSSEELDGNMHGRVDPKGIKFDEFGN 270 (322)
T ss_dssp TSC-EEEEEEEETTSSTTSCEEEEEEEECTTSC
T ss_pred CCC-EEEEecCcccccccCCCccEEEEECCCCC
Confidence 998 5555543 356777776544
No 268
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.34 E-value=0.0014 Score=59.79 Aligned_cols=211 Identities=9% Similarity=-0.012 Sum_probs=131.6
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeE
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKI 191 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 191 (406)
+.....+..++|.+.+..++.+-...+.|+.+++..... .......+........++++.+.+.++.++-...+.|
T Consensus 108 ~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~----~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I 183 (400)
T 3p5b_L 108 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG----VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTV 183 (400)
T ss_dssp ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC----------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCC----CCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeE
Confidence 345567889999987667777777788899998865210 0111222222334567888887555366666677899
Q ss_pred EEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec-CCcEEEEECCCCcccccccccCCCeeEEEecCCC
Q 015484 192 CLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD-DCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 192 ~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~ 270 (406)
.+.+++..... ..+...-.....|+++|.++.++.+-.. .+.|...++............-...+.|++++.+
T Consensus 184 ~~~~~~g~~~~------~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~ 257 (400)
T 3p5b_L 184 SVADTKGVKRK------TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLS 257 (400)
T ss_dssp EEECTTTCSEE------EEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTT
T ss_pred EEEeCCCCceE------EEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCC
Confidence 99998754211 1122233457899999966666665433 4789999987543322223233567899999887
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCcEEecC--CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 015484 271 EWVLATASSDTTVALFDMRKMTVPLHILSS--HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI 335 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~ 335 (406)
..++++-...+.|..+|+..... ...... .-.....+++. +..++.+-...+.|..+|..+.
T Consensus 258 ~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 258 GRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp TEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESSSC
T ss_pred CEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCC
Confidence 75556555667899999875332 222222 23455677774 3347777777888999986553
No 269
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.31 E-value=0.00078 Score=62.14 Aligned_cols=253 Identities=9% Similarity=0.031 Sum_probs=139.6
Q ss_pred ceeEEEEcCC--CCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC---Ce-
Q 015484 117 EVNRARCMPQ--KPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD---NK- 190 (406)
Q Consensus 117 ~v~~i~~~p~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~- 190 (406)
....++|.|+ +..++++-.. +.|+.++..... +..+........++++++++. ++++.... ..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~---------v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~g 208 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQY---------VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTG 208 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTE---------EEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEE
T ss_pred CCceEEEccccCCCEEEEEeCC-CCEEEEECCCCE---------EEEeecCCCCccEEEECCCCC-EEEEcCCCCcccce
Confidence 4678899985 3344444333 789999986532 223333445678999999988 66665421 12
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-c-ccCCCeeEEEecC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-K-AHEKEVNYLSFNP 268 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~-~~~~~v~~i~~~~ 268 (406)
+...+.... .... ..+. .-.....++++|.++.++++-..++.|+.+|..++.....+ . .....-..++|+|
T Consensus 209 v~~~~~~~~-~~~~----~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dp 282 (433)
T 4hw6_A 209 IYLFTRASG-FTER----LSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHP 282 (433)
T ss_dssp EEEECGGGT-TCCE----EEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECT
T ss_pred EEEEECCCC-eecc----cccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeC
Confidence 333332211 1100 1111 22345678889866777777777889999998866542222 1 1122234699999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCC---cEEecCC---------------CCCeEEEEE---------cCCCCCEEEEE
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVP---LHILSSH---------------TEEVFQVEW---------DPNHETVLASS 321 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~h---------------~~~v~~i~~---------~p~~~~~l~s~ 321 (406)
+++.++++-...+.|+.+++...... ...+.+. -.....+++ .+++. ++++-
T Consensus 283 dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyvaD 361 (433)
T 4hw6_A 283 TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFCD 361 (433)
T ss_dssp TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEEE
T ss_pred CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEEE
Confidence 99855555556778999886532110 1122111 123677898 66664 66666
Q ss_pred eCCCcEEEEeCCCCCcccccccccCC-CCeeEEE---ecCCCCCeeeEEeC-CCCCcEEEEEeCCCcEEEEeCC
Q 015484 322 ADDRRLMVWDLNRIGDEQLELDAEDG-PPELLFS---HGGHKAKISDFSWN-KNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 322 ~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~---~~~h~~~v~~~~~s-~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
...+.|+.++... ........... ..-..-- ....-.....|+++ +++. ++++=...+.|+.++++
T Consensus 362 ~~n~~I~~~~~~G--~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~-lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 362 RDSHTVRVLTPEG--RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKC-FYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TTTTEEEEECTTS--EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTE-EEEEEGGGTEEEEEEEC
T ss_pred CCCCEEEEECCCC--CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCE-EEEEeCCCCEEEEEecC
Confidence 6778899887532 11111000000 0000000 00012346789999 5665 66666667788887764
No 270
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.30 E-value=0.00035 Score=61.22 Aligned_cols=200 Identities=13% Similarity=0.090 Sum_probs=120.4
Q ss_pred CCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC--CcEEEEE
Q 015484 167 KEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD--CQLMIWD 244 (406)
Q Consensus 167 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d--g~i~i~d 244 (406)
....+++|++++. ++++-..++.|..||..... . ..+ .....+..+++.+ +++++++.... ..|..+|
T Consensus 32 ~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~~----~---~~~-~~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d 101 (306)
T 2p4o_A 32 TFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQ----Q---IHA-TVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLV 101 (306)
T ss_dssp CCEEEEEECTTSC-EEEEETTTTEEEEECTTCCE----E---EEE-ECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCeEEEECCCCce----E---EEE-eCCCCceeEEEcC-CCcEEEEeccCCcceEEEEc
Confidence 4567899999877 77777688999999876521 1 111 1234688899998 45666555432 2477778
Q ss_pred CCCCccccccc-ccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEE---------ecCCCCCeEEEEEcCCC
Q 015484 245 LRTNQTQQRVK-AHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHI---------LSSHTEEVFQVEWDPNH 314 (406)
Q Consensus 245 ~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---------~~~h~~~v~~i~~~p~~ 314 (406)
..+++...... ........++..+.+. .+++-..++.|.++|.......+.. ....-...+.| +|++
T Consensus 102 ~~~g~~~~~~~~~~~~~~~g~~~~~~~~-~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg 178 (306)
T 2p4o_A 102 KSDGTVETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFG 178 (306)
T ss_dssp CTTSCEEEEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEET
T ss_pred CCCCeEEEEEeCCCccccCcccccCCCc-EEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCC
Confidence 77766432221 1122234455444443 4555545789999997643110110 00111245666 7888
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 315 ETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 315 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
+.++++-...+.|..|++...+.. ......... .....++++++|. ++++....+.|.+++....
T Consensus 179 ~~lyv~d~~~~~I~~~~~~~~g~~--------~~~~~~~~~----~~P~gi~vd~dG~-l~va~~~~~~V~~~~~~G~ 243 (306)
T 2p4o_A 179 NFLYVSNTEKMLLLRIPVDSTDKP--------GEPEIFVEQ----TNIDDFAFDVEGN-LYGATHIYNSVVRIAPDRS 243 (306)
T ss_dssp TEEEEEETTTTEEEEEEBCTTSCB--------CCCEEEEES----CCCSSEEEBTTCC-EEEECBTTCCEEEECTTCC
T ss_pred CEEEEEeCCCCEEEEEEeCCCCCC--------CccEEEecc----CCCCCeEECCCCC-EEEEeCCCCeEEEECCCCC
Confidence 777777778899999998642110 011222221 3467899999997 6777666788999997643
No 271
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.28 E-value=0.00051 Score=63.35 Aligned_cols=254 Identities=8% Similarity=0.025 Sum_probs=136.0
Q ss_pred ceeEEEEcC-CCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC-CC----e
Q 015484 117 EVNRARCMP-QKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH-DN----K 190 (406)
Q Consensus 117 ~v~~i~~~p-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-dg----~ 190 (406)
....++++| ++..++++ ...+.|+.+|..... +..+.........|+|++++. .|+.+.. ++ .
T Consensus 138 ~P~~lavdp~~~g~Lyv~-d~~~~I~~id~~~~~---------v~~~~~~~~~P~~ia~d~~G~-~lyvad~~~~~~~~~ 206 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLV-GEQHPTRLIDFEKEY---------VSTVYSGLSKVRTICWTHEAD-SMIITNDQNNNDRPN 206 (430)
T ss_dssp CCCEEEEETTEEEEEEEE-EBTEEEEEEETTTTE---------EEEEECCCSCEEEEEECTTSS-EEEEEECCSCTTSEE
T ss_pred CCCEEEECCCCCCeEEEE-eCCCcEEEEECCCCE---------EEEEecCCCCcceEEEeCCCC-EEEEEeCCCCcccce
Confidence 457788888 34344444 333788888887632 223333445678999999887 5665544 22 2
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccc-ccCCCeeEEEecCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK-AHEKEVNYLSFNPY 269 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~i~~~~~ 269 (406)
+.+++. .+.... . ..+.. ......++++|.++.++++-..++.|..++...+....... ......+.++|+|+
T Consensus 207 v~~~~~-~g~~~~-~---~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pd 280 (430)
T 3tc9_A 207 NYILTR-ESGFKV-I---TELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPS 280 (430)
T ss_dssp EEEEEG-GGTSCS-E---EEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTT
T ss_pred EEEEeC-CCceee-e---eeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCC
Confidence 333443 222211 0 11111 23456788998677888777788899999988665322221 11234678999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCC---CcEEecCC---------------CCCeE-EEEEc--------CCCCCEEEEEe
Q 015484 270 NEWVLATASSDTTVALFDMRKMTV---PLHILSSH---------------TEEVF-QVEWD--------PNHETVLASSA 322 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~h---------------~~~v~-~i~~~--------p~~~~~l~s~~ 322 (406)
++.++++-...+.|..++...... .+..+.+. -.... .+... +++ .+.++-.
T Consensus 281 G~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g-~lyvaD~ 359 (430)
T 3tc9_A 281 GNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEY-DFYFCDR 359 (430)
T ss_dssp SSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCE-EEEEEEG
T ss_pred CCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCC-eEEEEEC
Confidence 985555556677899987653211 01111111 01123 44443 234 3455555
Q ss_pred CCCcEEEEeCCCCCcccccccccC-CCCeeEEE---ecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 323 DDRRLMVWDLNRIGDEQLELDAED-GPPELLFS---HGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 323 ~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~---~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
..+.|+.++... .......... +..-..-- ..+.-.....++++|++..++++-...+.|+.++++
T Consensus 360 ~n~~I~~i~~~G--~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 360 ENHCIRILTPQG--RVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp GGTEEEEECTTS--EEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCcEEEEECCCC--cEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 567787777321 1110000000 00000000 000112478899999533367776667788887764
No 272
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.27 E-value=0.00046 Score=64.13 Aligned_cols=262 Identities=10% Similarity=0.029 Sum_probs=144.5
Q ss_pred eeEEEEcCC-CCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC----CCCCeeEEEe-------cCCCCCeEEEe
Q 015484 118 VNRARCMPQ-KPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG----HDKEGYGLSW-------SPFKEGYLVSG 185 (406)
Q Consensus 118 v~~i~~~p~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~----h~~~v~~l~~-------~~~~~~~l~s~ 185 (406)
...|+|.|. +.+++++....+.|++.|+..... ..+.. .......|+| ++++. .|+.+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v---------~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~-~lyva 210 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRML---------SSPLNINTIPTNRIRSIAFNKKIEGYADEAE-YMIVA 210 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEE---------EEEECCTTSSCSBEEEEEECCCBTTTBCTTC-EEEEE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEE---------EEEEccCccccCCCcEEEEeecccccCCCCC-EEEEE
Confidence 568899984 445666665556788888877322 22221 1235789999 99887 66666
Q ss_pred cCCC-------eEEEEeCCC-ccCCc-e-eeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECC-------CC
Q 015484 186 SHDN-------KICLWDVSA-LAQDK-V-IDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR-------TN 248 (406)
Q Consensus 186 ~~dg-------~i~iwd~~~-~~~~~-~-~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~-------~~ 248 (406)
...+ .|.+++... +.... . ...+..+ .....++.+|.++.++++-..++.|..+|+. ++
T Consensus 211 d~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~----~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg 286 (496)
T 3kya_A 211 IDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY----KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNG 286 (496)
T ss_dssp ECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE----SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTT
T ss_pred eCCCCCcccCceEEEEecCCCCceeecccceeeccC----CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCc
Confidence 5543 255665333 11110 0 0111111 2345778899778888888889999999997 45
Q ss_pred cc-----------cccc-c-ccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCc---EEecCC---C-------
Q 015484 249 QT-----------QQRV-K-AHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPL---HILSSH---T------- 302 (406)
Q Consensus 249 ~~-----------~~~~-~-~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~~h---~------- 302 (406)
.. ...+ . ......+.|+|+|++..++++-+....|+.++.......+ ..+.+. .
T Consensus 287 ~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~ 366 (496)
T 3kya_A 287 GSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVG 366 (496)
T ss_dssp CCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBG
T ss_pred eeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcc
Confidence 43 0111 1 1233457899999998445555566788886654321101 112111 1
Q ss_pred -----CCeE-EEEEc-------CCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC----------CCCeeEEEecCCC
Q 015484 303 -----EEVF-QVEWD-------PNHETVLASSADDRRLMVWDLNRIGDEQLELDAED----------GPPELLFSHGGHK 359 (406)
Q Consensus 303 -----~~v~-~i~~~-------p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~~~~~~~~~h~ 359 (406)
.... .+... +.+ .++++-....+|+.++... .......... +...=.....+.-
T Consensus 367 ~~a~f~~P~~gv~vd~~~~~~~~~g-~lyVaD~~N~rIr~i~~~G--~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f 443 (496)
T 3kya_A 367 TEARMNNPCQGVFVKNPDYTGEEEY-DFYFVDRLNFCVRKVTPEG--IVSTYAGRGASTSLADGNQWGTDDGDLREVARF 443 (496)
T ss_dssp GGCBCSSEEEEEEEECTTCCSSCCE-EEEEEEGGGTEEEEECTTC--BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCC
T ss_pred cccccCCCeEEEEEccccccccCCC-eEEEEECCCCEEEEEeCCC--CEEEEecccccccccCccccccCCCCchhhhhc
Confidence 1234 44444 344 3566666778898888432 1111111000 0000000000112
Q ss_pred CCeeeEEeCCC-CCcEEEEEeCCCcEEEEeCCCcccCCC
Q 015484 360 AKISDFSWNKN-DPWVISSVADDNTVQVWQMTDSIYRDD 397 (406)
Q Consensus 360 ~~v~~~~~s~~-~~~~l~s~~~dg~i~iw~~~~~~~~~~ 397 (406)
.....|+++++ +. ++++=.....|+.+++.....-.+
T Consensus 444 ~~P~gIavd~~~g~-lyVaD~~N~rIrki~~~~~~~~~~ 481 (496)
T 3kya_A 444 RDVSGLVYDDVKEM-FYVHDQVGHTIRTISMEQEENVAG 481 (496)
T ss_dssp SSEEEEEEETTTTE-EEEEETTTTEEEEEEECCCC----
T ss_pred CCCcEEEEECCCCE-EEEEeCCCCEEEEEECCCCccccc
Confidence 34678999996 66 677766778999999988766443
No 273
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.25 E-value=1.7e-05 Score=78.00 Aligned_cols=229 Identities=7% Similarity=0.014 Sum_probs=130.5
Q ss_pred CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEe-cCCCeEEEEeCCCccCCceeeeeeeeeccC
Q 015484 137 SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSG-SHDNKICLWDVSALAQDKVIDAMHVYEAHE 215 (406)
Q Consensus 137 dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 215 (406)
.+.|++.++..... ..+......+.+|+|.+.+. .|+.+ ...+.|..+++.......... ..+....
T Consensus 385 ~~~I~~id~~~~~~---------~~~~~~~~~p~gla~d~~~~-~Ly~sD~~~~~I~~~~~~g~~~~~~~~--~~i~~~~ 452 (699)
T 1n7d_A 385 RHEVRKMTLDRSEY---------TSLIPNLRNVVALDTEVASN-RIYWSDLSQRMICSTQLDRAHGVSSYD--TVISRDI 452 (699)
T ss_dssp TTC-CEECTTSCCE---------ECCSCCCTTCCCCEEETTTT-EEEECCTTTTSBEEEESCCCCC-CCCC--CBCCSCC
T ss_pred ccceEEEeCCCCcc---------eeeeccCcceEEEccccccC-eEEEEecCCCeEEEEecCCCCCCcceE--EEEeCCC
Confidence 34577777765211 11112224567899998766 55544 456789999987511000000 1111111
Q ss_pred ccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCC-CcEEEEeCCCCCCC
Q 015484 216 SVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD-TTVALFDMRKMTVP 294 (406)
Q Consensus 216 ~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~ 294 (406)
.....|++.+.+++++++-...+.|.++++........+.........|+++|.+..++++-... +.|.++++.....
T Consensus 453 ~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~- 531 (699)
T 1n7d_A 453 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI- 531 (699)
T ss_dssp --CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-
T ss_pred CCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-
Confidence 23456777765677777766778899999875543333332234567889999766455544333 6888888764332
Q ss_pred cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcE
Q 015484 295 LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWV 374 (406)
Q Consensus 295 ~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~ 374 (406)
.......-...+.|+|+|++..++++-+..+.|..+++..... ..+....+.......|++..+ ++
T Consensus 532 ~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~------------~~~~~~~~~~~~P~glavd~~--~l 597 (699)
T 1n7d_A 532 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR------------KTILEDEKRLAHPFSLAVFED--KV 597 (699)
T ss_dssp CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC------------EEECCCSSSCSSCCCCEEETT--EE
T ss_pred eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce------------EEEEecCCcCCCceEeEEECC--EE
Confidence 2222222345678999998777777777788999999864211 111111111223455666543 36
Q ss_pred EEEEeCCCcEEEEeCCCc
Q 015484 375 ISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 375 l~s~~~dg~i~iw~~~~~ 392 (406)
+++....+.|..++..++
T Consensus 598 ywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 598 FWTDIINEAIFSANRLTG 615 (699)
T ss_dssp EEECSTTTCEEEEETTTE
T ss_pred EEEeCCCCeEEEEEccCC
Confidence 667666788888887654
No 274
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.24 E-value=0.0017 Score=64.81 Aligned_cols=246 Identities=10% Similarity=-0.026 Sum_probs=144.7
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCc--eeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPD--LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
..|.++...+++. |-.|+.++-|..++.......... ..+. ....-....|.++...+++. |..|+.++-|..
T Consensus 313 ~~v~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~v~~i~~d~~g~--lWigt~~~Gl~~ 387 (781)
T 3v9f_A 313 ASARYIFQDSFNN--IWIGTWGGGINFISNAPPTFHTWS-YSPTQMNESSLSNKVVSSVCDDGQGK--LWIGTDGGGINV 387 (781)
T ss_dssp SCEEEEEECSSCC--EEEEEBSSCEEEECSSCCSCEEEC-----CCCSSCCSSSCEEEEEECTTSC--EEEEEBSSCEEE
T ss_pred CeEEEEEEeCCCC--EEEEecCCeEEEeCCCCCcceeec-cCccccccCCCCCcceEEEEEcCCCC--EEEEeCCCcEEE
Confidence 5688888888773 555676666888887653211000 0000 00001235688888877654 667776677888
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc--cccCCCeeEEEecCCCC
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV--KAHEKEVNYLSFNPYNE 271 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~i~~~~~~~ 271 (406)
|+..+..... +. .........|.++...+ ++.+. .|+.++.|..+|.++++..... ......|.++...+++.
T Consensus 388 ~~~~~~~~~~-~~--~~~~~~~~~v~~i~~d~-~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~ 462 (781)
T 3v9f_A 388 FENGKRVAIY-NK--ENRELLSNSVLCSLKDS-EGNLW-FGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK 462 (781)
T ss_dssp EETTEEEEEC-C-------CCCSBEEEEEECT-TSCEE-EEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE
T ss_pred EECCCCeEEE-cc--CCCCCCCcceEEEEECC-CCCEE-EEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC
Confidence 9876532110 00 00012345688888775 45555 4666677999998776532221 12346789998888776
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCcEEecCC-----CCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC
Q 015484 272 WVLATASSDTTVALFDMRKMTVPLHILSSH-----TEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED 346 (406)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h-----~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 346 (406)
|..|+. +.|..||..+... ....... ...|.++...+++. |..|+.++-+..||.....
T Consensus 463 --lwigt~-~Gl~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~---------- 526 (781)
T 3v9f_A 463 --IWIGTH-AGVFVIDLASKKV-IHHYDTSNSQLLENFVRSIAQDSEGR--FWIGTFGGGVGIYTPDMQL---------- 526 (781)
T ss_dssp --EEEEET-TEEEEEESSSSSC-CEEECTTTSSCSCSCEEEEEECTTCC--EEEEESSSCEEEECTTCCE----------
T ss_pred --EEEEEC-CceEEEeCCCCeE-EecccCcccccccceeEEEEEcCCCC--EEEEEcCCCEEEEeCCCCe----------
Confidence 555555 4589999876443 1211111 35799999999886 4455554457778875411
Q ss_pred CCCeeEEEec----CCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 347 GPPELLFSHG----GHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 347 ~~~~~~~~~~----~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
...+. -....|.++...++|. +.++. .+|.|..|+..++.+
T Consensus 527 -----~~~~~~~~~l~~~~i~~i~~d~~g~-lWi~T-~~Glv~~~d~~~~~~ 571 (781)
T 3v9f_A 527 -----VRKFNQYEGFCSNTINQIYRSSKGQ-MWLAT-GEGLVCFPSARNFDY 571 (781)
T ss_dssp -----EEEECTTTTCSCSCEEEEEECTTSC-EEEEE-TTEEEEESCTTTCCC
T ss_pred -----EEEccCCCCCCCCeeEEEEECCCCC-EEEEE-CCCceEEECCCCCcE
Confidence 11111 1234688999999888 45443 466558888877654
No 275
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.22 E-value=0.0016 Score=64.60 Aligned_cols=210 Identities=8% Similarity=-0.017 Sum_probs=129.4
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
.....+..|+|.+.+..++.+-...+.|+.+++...... ......+........+|++.+.++++.++-...+.|.
T Consensus 421 ~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~----~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~ 496 (791)
T 3m0c_C 421 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV----SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS 496 (791)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC----cceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEE
Confidence 344567889999866567777777788988888752110 0112223223345668888877764666667788999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC-CcEEEEECCCCcccccccccCCCeeEEEecCCCC
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD-CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNE 271 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~ 271 (406)
+.++..... . ..+...-.....|+++|..+.++++-... +.|...++........+...-...+.|++++.+.
T Consensus 497 v~~ldG~~~----~--~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~ 570 (791)
T 3m0c_C 497 VADTKGVKR----K--TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG 570 (791)
T ss_dssp EEETTSSSE----E--EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTT
T ss_pred EEeCCCCeE----E--EEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCC
Confidence 999875321 1 11222334588999999666666665333 7899999875443333333335678999998777
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCcEEecC--CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 015484 272 WVLATASSDTTVALFDMRKMTVPLHILSS--HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI 335 (406)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~ 335 (406)
.++++-...+.|..+++..... ...+.. .-.....|++.. .+++++-...+.|...+..+.
T Consensus 571 ~LYwaD~~~~~I~~~d~dG~~~-~~v~~~~~~l~~P~glav~~--~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 571 RLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp EEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEEEEETTTC
T ss_pred eEEEEeCCCCcEEEEecCCCce-EEEecCCCccCCCCEEEEeC--CEEEEEECCCCEEEEEeCCCC
Confidence 4555555567899999875433 223322 123455677643 356777777788888886554
No 276
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.20 E-value=0.0013 Score=65.76 Aligned_cols=255 Identities=9% Similarity=0.028 Sum_probs=145.4
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCC--C----CCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDD--C----DPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
...|.++...+++ . |..|+..+-|.+++........... . .+.....-....|.++...++|. |-.|+.+
T Consensus 257 ~~~i~~i~~d~~g-~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~--lWigt~~ 332 (781)
T 3v9f_A 257 SSYIFSIKQLKDN-K-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN--IWIGTWG 332 (781)
T ss_dssp CCCEEEEEECTTS-E-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC--EEEEEBS
T ss_pred CceEEEEEECCCC-C-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC--EEEEecC
Confidence 3568888888877 3 5556664458888887632110000 0 00000011345688988887665 6777777
Q ss_pred CeEEEEeCCCccCCceeeeee----eeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc---cccCCCe
Q 015484 189 NKICLWDVSALAQDKVIDAMH----VYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV---KAHEKEV 261 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~----~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v 261 (406)
+-|..++....... .+.... ........|.++...+ ++.+. .|+.++.|..||..++...... ......|
T Consensus 333 ~Gl~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v 409 (781)
T 3v9f_A 333 GGINFISNAPPTFH-TWSYSPTQMNESSLSNKVVSSVCDDG-QGKLW-IGTDGGGINVFENGKRVAIYNKENRELLSNSV 409 (781)
T ss_dssp SCEEEECSSCCSCE-EEC----CCCSSCCSSSCEEEEEECT-TSCEE-EEEBSSCEEEEETTEEEEECC-----CCCSBE
T ss_pred CeEEEeCCCCCcce-eeccCccccccCCCCCcceEEEEEcC-CCCEE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcce
Confidence 77888987654321 110000 0011235688888775 45544 5676677999998765432211 1234678
Q ss_pred eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec---CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcc
Q 015484 262 NYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILS---SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE 338 (406)
Q Consensus 262 ~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 338 (406)
.++...+++. |..|+.++.|..+|.++.. ...+. .....|.++...+++. |..|+. +-|..||.....-.
T Consensus 410 ~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~~~~v~~i~~d~~g~--lwigt~-~Gl~~~~~~~~~~~ 482 (781)
T 3v9f_A 410 LCSLKDSEGN--LWFGTYLGNISYYNTRLKK--FQIIELEKNELLDVRVFYEDKNKK--IWIGTH-AGVFVIDLASKKVI 482 (781)
T ss_dssp EEEEECTTSC--EEEEETTEEEEEECSSSCE--EEECCSTTTCCCCEEEEEECTTSE--EEEEET-TEEEEEESSSSSCC
T ss_pred EEEEECCCCC--EEEEeccCCEEEEcCCCCc--EEEeccCCCCCCeEEEEEECCCCC--EEEEEC-CceEEEeCCCCeEE
Confidence 8998888776 5557776679999886543 22332 2346799999888875 444555 56888887652211
Q ss_pred cccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 339 QLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
... .. .. . ......|.++...++|. +.++ +.++-|..|+..++.+
T Consensus 483 ~~~-~~-~~-~------~~~~~~i~~i~~d~~g~-lWig-t~~~Gl~~~~~~~~~~ 527 (781)
T 3v9f_A 483 HHY-DT-SN-S------QLLENFVRSIAQDSEGR-FWIG-TFGGGVGIYTPDMQLV 527 (781)
T ss_dssp EEE-CT-TT-S------SCSCSCEEEEEECTTCC-EEEE-ESSSCEEEECTTCCEE
T ss_pred ecc-cC-cc-c------ccccceeEEEEEcCCCC-EEEE-EcCCCEEEEeCCCCeE
Confidence 000 00 00 0 01135688999999888 4444 4434477788776543
No 277
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.12 E-value=0.00023 Score=69.67 Aligned_cols=154 Identities=11% Similarity=0.100 Sum_probs=86.8
Q ss_pred EEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCC-CCeeEEEecC--CCCCeEEEecC------CCeEEEEeCCCcc
Q 015484 130 LVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHD-KEGYGLSWSP--FKEGYLVSGSH------DNKICLWDVSALA 200 (406)
Q Consensus 130 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~--~~~~~l~s~~~------dg~i~iwd~~~~~ 200 (406)
.+++++.++.|..+|..+++. .-.+.... .....+.-+| .+. .++.+.. +|.|..+|..+++
T Consensus 119 ~v~v~~~dg~l~alD~~tG~~--------~W~~~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~ 189 (668)
T 1kv9_A 119 KVYVGTLDGRLIALDAKTGKA--------IWSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGK 189 (668)
T ss_dssp EEEEECTTSEEEEEETTTCCE--------EEEEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred EEEEEcCCCEEEEEECCCCCE--------eeeeccCCCCCcceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCc
Confidence 577778899999999987543 22222110 0000010111 133 5555543 5899999999886
Q ss_pred CCceeeeeeeee-------------------------ccCccEEEEEeeCCCCCEEEEEecCC-----------------
Q 015484 201 QDKVIDAMHVYE-------------------------AHESVVEDVSWHLKNENLFGSAGDDC----------------- 238 (406)
Q Consensus 201 ~~~~~~~~~~~~-------------------------~~~~~i~~i~~~p~~~~~l~~~~~dg----------------- 238 (406)
....+....... ........+++.| ...+++.++.++
T Consensus 190 ~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~ 268 (668)
T 1kv9_A 190 LAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLY 268 (668)
T ss_dssp EEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred EEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCcee
Confidence 543332100000 0111122467777 456666776665
Q ss_pred --cEEEEECCCCcccccccc--cC-------CCeeEEEecCCCC--cEEEEEeCCCcEEEEeCCCCCC
Q 015484 239 --QLMIWDLRTNQTQQRVKA--HE-------KEVNYLSFNPYNE--WVLATASSDTTVALFDMRKMTV 293 (406)
Q Consensus 239 --~i~i~d~~~~~~~~~~~~--~~-------~~v~~i~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~ 293 (406)
.|..+|.++++.+-.+.. |. .+.....+..++. ..++.++.+|.++++|.++++.
T Consensus 269 ~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 336 (668)
T 1kv9_A 269 LSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL 336 (668)
T ss_dssp TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred eeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence 499999999998766532 21 2222222222342 2588899999999999988764
No 278
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.12 E-value=0.00029 Score=70.03 Aligned_cols=196 Identities=11% Similarity=0.136 Sum_probs=109.6
Q ss_pred CeeEEEec-CCCCCeEEEe-cCCC----eEEEEeCCCc-cCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC---
Q 015484 168 EGYGLSWS-PFKEGYLVSG-SHDN----KICLWDVSAL-AQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD--- 237 (406)
Q Consensus 168 ~v~~l~~~-~~~~~~l~s~-~~dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d--- 237 (406)
.+...+|| |+|+ +|+-+ +.+| .|+++|+.++ .... ..+. .....++|+|++..++++ ..+
T Consensus 175 ~~~~~~~S~PDG~-~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-----~~~~---~~~~~~~WspDg~~l~y~-~~d~~~ 244 (751)
T 2xe4_A 175 DVMEVKPAPPEHD-LVAFSVDMSGNEVYTIEFKRISDPSQTIA-----DKVS---GTNGEIVWGPDHTSLFYV-TKDETL 244 (751)
T ss_dssp EEEEEEECTTTTC-EEEEEEESSSSSCEEEEEEETTCTTCCCC-----CCEE---EECSCCEECSSTTEEEEE-EECTTC
T ss_pred EEeeeEecCCCCC-EEEEEEeCCCCceEEEEEEECCCCCEeCC-----cccc---CceeeEEEecCCCEEEEE-EECCCC
Confidence 57789999 9998 66643 3333 5999999887 4211 0111 123568899954445544 443
Q ss_pred --CcEEEEECCCCccc--cccc-ccCCCeeEEEecCCCCcEEEEEeC--CCcEEEEeCCCCCCCc--EEec-CCCCCeEE
Q 015484 238 --CQLMIWDLRTNQTQ--QRVK-AHEKEVNYLSFNPYNEWVLATASS--DTTVALFDMRKMTVPL--HILS-SHTEEVFQ 307 (406)
Q Consensus 238 --g~i~i~d~~~~~~~--~~~~-~~~~~v~~i~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~--~~~~-~h~~~v~~ 307 (406)
..|.++++.++... ..+. ........+.|+|+++.++++... ...|.++|+.+..... ..+. .......+
T Consensus 245 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s 324 (751)
T 2xe4_A 245 RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYD 324 (751)
T ss_dssp CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEE
T ss_pred CCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEE
Confidence 35888888776432 2222 223346678999999955544433 2368888988753223 3343 33455566
Q ss_pred EEEcCCCCCEEEEEeCC--C--cEEEEeCCCCCcccccccccCCCCee-EEEecCCCCCeeeEEeCCCCCcEEEEEeCCC
Q 015484 308 VEWDPNHETVLASSADD--R--RLMVWDLNRIGDEQLELDAEDGPPEL-LFSHGGHKAKISDFSWNKNDPWVISSVADDN 382 (406)
Q Consensus 308 i~~~p~~~~~l~s~~~d--g--~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg 382 (406)
+.|+. ++.+++.+..+ + .|..+++..... ... +.... ....+.++.+. +.+++++...++
T Consensus 325 ~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~-----------~~~~li~~~-~~~~l~~~~~~--~~~lv~~~~~~g 389 (751)
T 2xe4_A 325 VQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSD-----------WSHVLVDHS-EDVFMESIAVR--SNYLVVAGRRAG 389 (751)
T ss_dssp EEEET-TTEEEEEECTTTCTTCEEEEEETTSTTC-----------CCCEEECCC-SSEEEEEEEEC--SSEEEEEEEETT
T ss_pred Eeeee-CCEEEEEeCCCCCCCcEEEEEcCCCccc-----------ceeeEECCC-CCcEEEEEEEE--CCEEEEEEEeCC
Confidence 66654 44456665554 3 566666543110 111 11111 11134555655 445788888888
Q ss_pred cEEEEe
Q 015484 383 TVQVWQ 388 (406)
Q Consensus 383 ~i~iw~ 388 (406)
..+||-
T Consensus 390 ~~~l~~ 395 (751)
T 2xe4_A 390 LTRIWT 395 (751)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 755553
No 279
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.06 E-value=3.6e-05 Score=75.64 Aligned_cols=207 Identities=8% Similarity=-0.006 Sum_probs=121.1
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEE
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLW 194 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 194 (406)
...+..|+|.+.+..++++-...+.|+.+++...... ......+...-....+|++.+.+..++++-...+.|.++
T Consensus 405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~----~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~ 480 (699)
T 1n7d_A 405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV----SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 480 (699)
T ss_dssp CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-----CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEE
T ss_pred CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCC----cceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEE
Confidence 3456788999876566666566788999888751100 000111111122345778876555366665667899999
Q ss_pred eCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC-CcEEEEECCCCcccccccccCCCeeEEEecCCCCcE
Q 015484 195 DVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD-CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWV 273 (406)
Q Consensus 195 d~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 273 (406)
++...... ..+.........|+++|.++.++++-... +.|..+++........+...-...+.|+|+|++..+
T Consensus 481 d~dg~~~~------~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~L 554 (699)
T 1n7d_A 481 DTKGVKRK------TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRL 554 (699)
T ss_dssp BSSSCCEE------EECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCE
T ss_pred ecCCCceE------EEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEE
Confidence 98753211 11111223467888998666666554333 778888876433222122223446789999987757
Q ss_pred EEEEeCCCcEEEEeCCCCCCCcEEecC--CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 274 LATASSDTTVALFDMRKMTVPLHILSS--HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 274 l~~~~~dg~i~vwd~~~~~~~~~~~~~--h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
+++-+..+.|..+|+..... ...+.. .......|++..+ .++++....+.|..++..+
T Consensus 555 Y~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 555 YWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp EEEETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTT
T ss_pred EEEecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccC
Confidence 77766778999999875332 222221 1123445566543 4677777788999998754
No 280
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.06 E-value=0.0061 Score=58.96 Aligned_cols=224 Identities=11% Similarity=0.063 Sum_probs=138.8
Q ss_pred CCCeEEEEeCCCccccccCCCCCceeee-CCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeecc
Q 015484 136 SSCEVYVFDCAKQAEKQQDDCDPDLRLK-GHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAH 214 (406)
Q Consensus 136 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 214 (406)
....|+..++..... ...+. ..-..+.+|+|++.+...+++-..++.|..++++..... ......
T Consensus 13 ~~~~I~~i~l~~~~~--------~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~------~v~~~g 78 (628)
T 4a0p_A 13 RRADIRRISLETNNN--------NVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE------HVVEFG 78 (628)
T ss_dssp ETTEEEEEESSCTTC--------EEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE------EEECSS
T ss_pred eCCcEEEEECCCCCc--------ceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE------EEEeCC
Confidence 456799999876311 11111 123457899999977635556566789999988754221 111112
Q ss_pred CccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEE-eCCCcEEEEeCCCCCC
Q 015484 215 ESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATA-SSDTTVALFDMRKMTV 293 (406)
Q Consensus 215 ~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~ 293 (406)
......+++.+.+++++++-...+.|.+.++........+...-.....|+++|....++.+- +..+.|...++....
T Consensus 79 ~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~- 157 (628)
T 4a0p_A 79 LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE- 157 (628)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-
T ss_pred CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-
Confidence 235677888876778888777788999999875432222223344568999999766344443 225678888876543
Q ss_pred CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCc
Q 015484 294 PLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPW 373 (406)
Q Consensus 294 ~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 373 (406)
...+...-...+.|++++.++.+.++-...+.|..+|+..... +.+.. .......+++.. +.
T Consensus 158 -~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~------------~v~~~---~l~~P~glav~~-~~- 219 (628)
T 4a0p_A 158 -RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR------------EVIAD---DLPHPFGLTQYQ-DY- 219 (628)
T ss_dssp -CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEEEE---CCSCEEEEEEET-TE-
T ss_pred -eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce------------EEeec---cCCCceEEEEEC-CE-
Confidence 2333334567899999998776666767788999999865211 22211 223355677654 33
Q ss_pred EEEEEeCCCcEEEEeCCCc
Q 015484 374 VISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 374 ~l~s~~~dg~i~iw~~~~~ 392 (406)
++.+-...+.|...+..++
T Consensus 220 ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 220 IYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp EEEEETTTTEEEEEETTTC
T ss_pred EEEecCCCCEEEEEECCCC
Confidence 5666555677777776554
No 281
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.96 E-value=0.0089 Score=53.40 Aligned_cols=241 Identities=8% Similarity=0.059 Sum_probs=121.7
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC---CCCeEEEecC-C--
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF---KEGYLVSGSH-D-- 188 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~~l~s~~~-d-- 188 (406)
-.....++|.|++ .++++ ...|.|++++ .. ........ + ...........|+|+|+ +. .|..+.. .
T Consensus 30 l~~P~~ia~~pdG-~l~V~-e~~g~I~~i~-~g-~~~~~~~~-~--v~~~g~~~p~gia~~pdf~~~g-~lYv~~~~~~~ 101 (352)
T 2ism_A 30 LEVPWALAFLPDG-GMLIA-ERPGRIRLFR-EG-RLSTYAEL-S--VYHRGESGLLGLALHPRFPQEP-YVYAYRTVAEG 101 (352)
T ss_dssp CSCEEEEEECTTS-CEEEE-ETTTEEEEEE-TT-EEEEEEEC-C--CCCSTTCSEEEEEECTTTTTSC-EEEEEEEECTT
T ss_pred CCCceEEEEcCCC-eEEEE-eCCCeEEEEE-CC-CccEeecc-e--EeecCCCCceeEEECCCCCCCC-EEEEEEecCCC
Confidence 3467899999999 44544 5669999998 22 11100000 0 11122356789999997 44 4444432 2
Q ss_pred ---CeEEEEeCCCccCCceeee-eeeee---ccCccEEEEEeeCCCCCEEEEEec-------------CCcEEEEECCCC
Q 015484 189 ---NKICLWDVSALAQDKVIDA-MHVYE---AHESVVEDVSWHLKNENLFGSAGD-------------DCQLMIWDLRTN 248 (406)
Q Consensus 189 ---g~i~iwd~~~~~~~~~~~~-~~~~~---~~~~~i~~i~~~p~~~~~l~~~~~-------------dg~i~i~d~~~~ 248 (406)
+.|..++...... ...+. +..+. ........++|.| ++.++++.+. .|.|.-++....
T Consensus 102 ~~~~~v~r~~~~~~~~-~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~ 179 (352)
T 2ism_A 102 GLRNQVVRLRHLGERG-VLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGE 179 (352)
T ss_dssp SSEEEEEEEEECSSCE-EEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSS
T ss_pred CCccEEEEEEeCCCCc-CceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCC
Confidence 6788888764311 01111 11122 1112346899999 5577766442 256666665431
Q ss_pred ------------cccccccccCCCeeEEEecC-CCCcEEEEEeCCCc--------EEEEeCCC---------------CC
Q 015484 249 ------------QTQQRVKAHEKEVNYLSFNP-YNEWVLATASSDTT--------VALFDMRK---------------MT 292 (406)
Q Consensus 249 ------------~~~~~~~~~~~~v~~i~~~~-~~~~~l~~~~~dg~--------i~vwd~~~---------------~~ 292 (406)
.....+...-.....++|+| .+. ++++-..... |.+..... ..
T Consensus 180 ~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~-l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~ 258 (352)
T 2ism_A 180 PAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGE-LFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYR 258 (352)
T ss_dssp BCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCC-EEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSC
T ss_pred CCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCC-EEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCc
Confidence 01111111112356789999 566 5554433333 44432211 01
Q ss_pred CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCC
Q 015484 293 VPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDP 372 (406)
Q Consensus 293 ~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 372 (406)
.|+..+. +......++| .++. ++++.-..+.|...++.......... ....+ +. -...+.++++.|+|.
T Consensus 259 ~p~~~~~-~~~ap~G~~~-~~G~-l~v~~~~~~~v~~v~~~~~~~~~~~~-----~~~~~--~~-~~~rp~~v~~~pdG~ 327 (352)
T 2ism_A 259 DPLYFWP-QGFPPGNLAF-FRGD-LYVAGLRGQALLRLVLEGERGRWRVL-----RVETA--LS-GFGRLREVQVGPDGA 327 (352)
T ss_dssp CCSEECT-TCCCEEEEEE-ETTE-EEEEETTTTEEEEEEEEEETTEEEEE-----EEEEE--EE-SSCCEEEEEECTTSC
T ss_pred CCeEecC-CCCCCcceEE-ECCE-EEEEECCCCEEEEEEECCCCcceeec-----chhee--cc-cCCCeeEEEECCCCc
Confidence 2344442 2345677888 3453 56666666777777765422100000 00111 12 235689999999998
Q ss_pred cEEEEE
Q 015484 373 WVISSV 378 (406)
Q Consensus 373 ~~l~s~ 378 (406)
++++.
T Consensus 328 -lyv~~ 332 (352)
T 2ism_A 328 -LYVTT 332 (352)
T ss_dssp -EEEEE
T ss_pred -EEEEE
Confidence 55554
No 282
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.94 E-value=0.00017 Score=70.53 Aligned_cols=235 Identities=6% Similarity=-0.073 Sum_probs=119.1
Q ss_pred CceeEEEEcCCCCcEEEEEe-CCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec-CC-----
Q 015484 116 GEVNRARCMPQKPNLVGTKT-SSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS-HD----- 188 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~d----- 188 (406)
....++++.+++ .+++.|+ .++.+.+||..+..-. ....+... ..-.+++..++++ +++.|+ .+
T Consensus 243 ~~~~~~~~~~~g-~lyv~GG~~~~~v~~yd~~t~~W~------~~~~~~~~-R~~~s~~~~~dg~-iyv~GG~~~~~~~~ 313 (656)
T 1k3i_A 243 MFCPGISMDGNG-QIVVTGGNDAKKTSLYDSSSDSWI------PGPDMQVA-RGYQSSATMSDGR-VFTIGGSWSGGVFE 313 (656)
T ss_dssp CSSCEEEECTTS-CEEEECSSSTTCEEEEEGGGTEEE------ECCCCSSC-CSSCEEEECTTSC-EEEECCCCCSSSCC
T ss_pred CccccccCCCCC-CEEEeCCCCCCceEEecCcCCcee------ECCCCCcc-ccccceEEecCCe-EEEEeCcccCCccc
Confidence 334456777777 5777777 4568999998874221 11112111 1123455556677 888887 34
Q ss_pred CeEEEEeCCCccCCceeeeeeee--eccCccEEEEEeeCCCCCEEEEEecCC---------cEEEEECCCCccccccccc
Q 015484 189 NKICLWDVSALAQDKVIDAMHVY--EAHESVVEDVSWHLKNENLFGSAGDDC---------QLMIWDLRTNQTQQRVKAH 257 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~--~~~~~~i~~i~~~p~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~ 257 (406)
..+.+||..+..- ..+... ......-....+.. ++.+++.++.+| .+..||..+..........
T Consensus 314 ~~~e~yd~~t~~W----~~~~~~~~~p~~~~~~~~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~ 388 (656)
T 1k3i_A 314 KNGEVYSPSSKTW----TSLPNAKVNPMLTADKQGLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKR 388 (656)
T ss_dssp CCEEEEETTTTEE----EEETTSCSGGGCCCCTTGGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEEC
T ss_pred ccceEeCCCCCcc----eeCCCccccccccccccceeec-CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCcc
Confidence 5689999876431 111000 00000000011222 455555665544 4678888776533222111
Q ss_pred C---------CCeeEEEecCCCCcEEEEEeCCC-----------cEEEEeCCCCCCCcEEe---cCCCCC-eEEEEEcCC
Q 015484 258 E---------KEVNYLSFNPYNEWVLATASSDT-----------TVALFDMRKMTVPLHIL---SSHTEE-VFQVEWDPN 313 (406)
Q Consensus 258 ~---------~~v~~i~~~~~~~~~l~~~~~dg-----------~i~vwd~~~~~~~~~~~---~~h~~~-v~~i~~~p~ 313 (406)
. ..-.++.+...+..+++.|+.++ .|.+||..+..- ... ..+... -.++...|+
T Consensus 389 ~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W--~~~~~~~mp~~R~~~~~~~l~~ 466 (656)
T 1k3i_A 389 QSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPN--TVFASNGLYFARTFHTSVVLPD 466 (656)
T ss_dssp EETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCE--EEECTTCCSSCCBSCEEEECTT
T ss_pred ccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCe--eEEccCCCCCCcccCCeEECCC
Confidence 1 12244455443444888887532 577888765431 111 112222 234566678
Q ss_pred CCCEEEEEeCC-----------CcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeC
Q 015484 314 HETVLASSADD-----------RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVAD 380 (406)
Q Consensus 314 ~~~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~ 380 (406)
++ +++.|+.+ ..+.+||..+..-. .+..............+.|+++ +++.||.
T Consensus 467 g~-i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~------------~~~~~~~~R~~hs~a~ll~dg~-v~v~GG~ 530 (656)
T 1k3i_A 467 GS-TFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY------------KQNPNSIVRVYHSISLLLPDGR-VFNGGGG 530 (656)
T ss_dssp SC-EEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE------------ECCCCSSCCCTTEEEEECTTSC-EEEEECC
T ss_pred CC-EEEECCcccCcCcCCCCcccceEEEcCCCCcee------------ecCCCCCccccccHhhcCCCcE-EEecCCC
Confidence 86 78888754 45888887652110 0000011111122345678898 7888874
No 283
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.91 E-value=0.0076 Score=58.19 Aligned_cols=228 Identities=8% Similarity=0.035 Sum_probs=131.8
Q ss_pred CCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccC
Q 015484 136 SSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHE 215 (406)
Q Consensus 136 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 215 (406)
....|++.++..... . ...+...-....+++|++.+..++++=...+.|..++++...... ..+...-
T Consensus 16 ~~~~I~~i~~~~~~~------~-~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~-----~v~~~~~ 83 (619)
T 3s94_A 16 NRRDLRLVDATNGKE------N-ATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ-----NVVVSGL 83 (619)
T ss_dssp CSSBEEEECCC----------------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CE-----EEECSSC
T ss_pred ccccEEEEeCCCCcc------e-EEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceE-----EEEeCCC
Confidence 355688888875210 0 111222334577999998776344444456889888887542111 1122222
Q ss_pred ccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEe-CCCcEEEEeCCCCCCC
Q 015484 216 SVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS-SDTTVALFDMRKMTVP 294 (406)
Q Consensus 216 ~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~ 294 (406)
.....+++.+.+++++++-...+.|.+.++........+...-.....|+++|.+..++++-- ..+.|...++.....
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~- 162 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR- 162 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC-
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce-
Confidence 468889999867778878778899999998754432222233445678999998663555432 245777777764332
Q ss_pred cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcE
Q 015484 295 LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWV 374 (406)
Q Consensus 295 ~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~ 374 (406)
.......-...+.|++++.++.+.++-...+.|...|+...... .+. .+.......+++..+ .+
T Consensus 163 ~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~-----------~~~---~~~~~~P~gi~~~~~--~l 226 (619)
T 3s94_A 163 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ-----------AVV---KGSLPHPFALTLFED--IL 226 (619)
T ss_dssp EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------------------CCCEEESSS--EE
T ss_pred EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccE-----------EEE---eCCCCCceEEEEeCC--EE
Confidence 22333334568999999987766666667788988888642111 111 111122456677655 35
Q ss_pred EEEEeCCCcEEEEeCCCc
Q 015484 375 ISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 375 l~s~~~dg~i~iw~~~~~ 392 (406)
+.+-...+.|...+..++
T Consensus 227 y~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 227 YWTDWSTHSILACNKYTG 244 (619)
T ss_dssp EEECTTTCSEEEEESSSC
T ss_pred EEecCCCCEEEEEECCCC
Confidence 666556677777777655
No 284
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.89 E-value=0.0031 Score=60.38 Aligned_cols=54 Identities=9% Similarity=0.011 Sum_probs=35.6
Q ss_pred cEEEEECCCCccccccccc----------CCCeeEEEecCCCC--cEEEEEeCCCcEEEEeCCCCCC
Q 015484 239 QLMIWDLRTNQTQQRVKAH----------EKEVNYLSFNPYNE--WVLATASSDTTVALFDMRKMTV 293 (406)
Q Consensus 239 ~i~i~d~~~~~~~~~~~~~----------~~~v~~i~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~ 293 (406)
.|..+|.++++.+-.+... ..++. +...++|+ .+++.++.+|.++++|..+++.
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 338 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNL 338 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCE
Confidence 5999999999886655321 12221 22223453 3677888899999999988764
No 285
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.86 E-value=0.0024 Score=58.89 Aligned_cols=204 Identities=11% Similarity=0.128 Sum_probs=114.9
Q ss_pred CeeEEEecCC--CCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC---C-cEE
Q 015484 168 EGYGLSWSPF--KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD---C-QLM 241 (406)
Q Consensus 168 ~v~~l~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d---g-~i~ 241 (406)
...+|+|+|+ +. .|..+...+.|+.+|+.++.. ..+.........++++++ ++++++.... . .+.
T Consensus 140 ~P~gvavd~~s~~g-~Lyv~D~~~~I~~id~~~g~v-------~~~~~~~~~P~giavd~d-G~lyVad~~~~~~~~gv~ 210 (433)
T 4hw6_A 140 NIWRMMFDPNSNYD-DLYWVGQRDAFRHVDFVNQYV-------DIKTTNIGQCADVNFTLN-GDMVVVDDQSSDTNTGIY 210 (433)
T ss_dssp CCCEEEECTTTTTC-EEEEECBTSCEEEEETTTTEE-------EEECCCCSCEEEEEECTT-CCEEEEECCSCTTSEEEE
T ss_pred CCceEEEccccCCC-EEEEEeCCCCEEEEECCCCEE-------EEeecCCCCccEEEECCC-CCEEEEcCCCCcccceEE
Confidence 3468999985 33 566665558999999866432 122223456889999984 5566554321 1 233
Q ss_pred EEECCCCccc-ccccccCCCeeEEEecC-CCCcEEEEEeCCCcEEEEeCCCCCCCcEEec-CCCCCeEEEEEcCCCCCEE
Q 015484 242 IWDLRTNQTQ-QRVKAHEKEVNYLSFNP-YNEWVLATASSDTTVALFDMRKMTVPLHILS-SHTEEVFQVEWDPNHETVL 318 (406)
Q Consensus 242 i~d~~~~~~~-~~~~~~~~~v~~i~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~i~~~p~~~~~l 318 (406)
..+...+... ..+. .......++++| .+. ++++-..++.|+.+|..++......+. .....-..++|+|+++.++
T Consensus 211 ~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~-lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LY 288 (433)
T 4hw6_A 211 LFTRASGFTERLSLC-NARGAKTCAVHPQNGK-IYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAY 288 (433)
T ss_dssp EECGGGTTCCEEEEE-ECSSBCCCEECTTTCC-EEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEE
T ss_pred EEECCCCeecccccc-ccCCCCEEEEeCCCCe-EEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEE
Confidence 3332221110 1111 233456788999 555 666655677899999875432011111 1122345799999998667
Q ss_pred EEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEe------------cCCCCCeeeEEe---------CCCCCcEEEE
Q 015484 319 ASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH------------GGHKAKISDFSW---------NKNDPWVISS 377 (406)
Q Consensus 319 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------------~~h~~~v~~~~~---------s~~~~~~l~s 377 (406)
++-...+.|..+++........ .+..+.-. ...-.....+++ .+++. ++++
T Consensus 289 vad~~~~~I~~~~~d~~~~~~~-------~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyva 360 (433)
T 4hw6_A 289 IIYNGKHCIYRVDYNRETGKLA-------VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFC 360 (433)
T ss_dssp EEETTTTEEEEEEBCTTTCCBC-------CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEE
T ss_pred EEeCCCCEEEEEeCCCCCcccC-------cEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEE
Confidence 7777788999988653211100 00011000 011223667888 67776 6666
Q ss_pred EeCCCcEEEEeCC
Q 015484 378 VADDNTVQVWQMT 390 (406)
Q Consensus 378 ~~~dg~i~iw~~~ 390 (406)
-...+.|+.++..
T Consensus 361 D~~n~~I~~~~~~ 373 (433)
T 4hw6_A 361 DRDSHTVRVLTPE 373 (433)
T ss_dssp ETTTTEEEEECTT
T ss_pred ECCCCEEEEECCC
Confidence 6667788888853
No 286
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.81 E-value=0.0069 Score=52.75 Aligned_cols=208 Identities=10% Similarity=0.045 Sum_probs=120.1
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC----C--CCCeeEEEe---cCCCCCeEEEec
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG----H--DKEGYGLSW---SPFKEGYLVSGS 186 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~----h--~~~v~~l~~---~~~~~~~l~s~~ 186 (406)
.-.-+++|.+....++++.-..|+|..|+........ . .+.+ . ...+.+|.| .|.+. ++++..
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~------~-~~~~~s~~g~~~~~~sGl~~~~~D~~gr-L~vv~~ 84 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFN------V-VIDGASSNGDGEQQMSGLSLLTHDNSKR-LFAVMK 84 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEE------E-CCTTTCCSSCCSEEEEEEEESSSSSCCE-EEEEEE
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEE------E-ecCCccccCCCcceeeEEEEeccCCCCc-EEEEEc
Confidence 3455788988665666666689999999987432110 1 1111 1 113579999 57755 655433
Q ss_pred -------------CCCeEEEEeCC---CccCCceeeeeeeeec-------cCccEEEEEeeCCCCCEEEEEecC-CcEEE
Q 015484 187 -------------HDNKICLWDVS---ALAQDKVIDAMHVYEA-------HESVVEDVSWHLKNENLFGSAGDD-CQLMI 242 (406)
Q Consensus 187 -------------~dg~i~iwd~~---~~~~~~~~~~~~~~~~-------~~~~i~~i~~~p~~~~~l~~~~~d-g~i~i 242 (406)
.+..|..+|+. +++.......-....+ -....++++..+ .++..++++.. +.|..
T Consensus 85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~r 163 (334)
T 2p9w_A 85 NAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIAR 163 (334)
T ss_dssp ETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEE
T ss_pred ccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEE
Confidence 26789999998 5543322110000000 113588999998 67777788887 88887
Q ss_pred EECCCCcccccc------cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec--CC---CCCeEEE-EE
Q 015484 243 WDLRTNQTQQRV------KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILS--SH---TEEVFQV-EW 310 (406)
Q Consensus 243 ~d~~~~~~~~~~------~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~h---~~~v~~i-~~ 310 (406)
.+.... .+..+ .......+.|+++|++. +|++....|.|..+|++.......... +. -.....| .-
T Consensus 164 V~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~-~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~ 241 (334)
T 2p9w_A 164 VSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSN-KLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTV 241 (334)
T ss_dssp ECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTT-EEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEE
T ss_pred EeCCCC-EEeeeeecCCCcccccCcceEEEeCCCC-EEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCccccccc
Confidence 776643 22222 11123467999999998 555555599999999984322001111 21 1223443 22
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 311 DPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 311 ~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
-.+|+.++++....+.+.+.+...
T Consensus 242 ~~~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 242 PVGNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp EETTEEEEEEEETTEEEEEECSST
T ss_pred ccCCEEEEEEcCCCCEEEEECCCC
Confidence 335654466666677666665543
No 287
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.79 E-value=0.031 Score=54.05 Aligned_cols=201 Identities=7% Similarity=-0.023 Sum_probs=131.3
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
..+..|+|.+.+..++.+-..++.|+.+++..... ...+........++++.+.+.++.++-...+.|.+.+
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~--------~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~ 108 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL--------EHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSK 108 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc--------EEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEe
Confidence 46889999997767777777889999998875211 1222222234567888766664566666678999999
Q ss_pred CCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEE-ecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEE
Q 015484 196 VSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSA-GDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVL 274 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 274 (406)
++.... ..+ ....-.....|++.|..+.++.+- +..+.|...++..... ..+...-...+.|++++.+..++
T Consensus 109 ~dG~~~-~~l-----~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~~~~~~P~GlalD~~~~~LY 181 (628)
T 4a0p_A 109 LDGQHR-QVL-----VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVPNVGRANGLTIDYAKRRLY 181 (628)
T ss_dssp TTSTTC-EEE-----ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSCSSEEEEEEETTTTEEE
T ss_pred cCCCcE-EEE-----EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEECCCCCcceEEEccccCEEE
Confidence 875421 111 112334578999999666666654 2357888888865443 22222345678999999877566
Q ss_pred EEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 015484 275 ATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI 335 (406)
Q Consensus 275 ~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~ 335 (406)
++-...+.|..+|+..... ..+.........+++.. + .++++-...+.|...|..+.
T Consensus 182 ~aD~~~~~I~~~d~dG~~~--~v~~~~l~~P~glav~~-~-~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 182 WTDLDTNLIESSNMLGLNR--EVIADDLPHPFGLTQYQ-D-YIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp EEETTTTEEEEEETTSCSC--EEEEECCSCEEEEEEET-T-EEEEEETTTTEEEEEETTTC
T ss_pred EEECCCCEEEEEcCCCCce--EEeeccCCCceEEEEEC-C-EEEEecCCCCEEEEEECCCC
Confidence 6666677999999976443 33333344567888865 3 46667667888888886554
No 288
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.72 E-value=0.0011 Score=60.99 Aligned_cols=155 Identities=14% Similarity=0.185 Sum_probs=96.0
Q ss_pred CeeEEEecC-CCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC----cEEE
Q 015484 168 EGYGLSWSP-FKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC----QLMI 242 (406)
Q Consensus 168 ~v~~l~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg----~i~i 242 (406)
....|+++| ++. .|..+...+.|+.+|+..... ..+.........++|++.+..++++...++ .+..
T Consensus 138 ~P~~lavdp~~~g-~Lyv~d~~~~I~~id~~~~~v-------~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~ 209 (430)
T 3tc9_A 138 GAVWLSFDPKNHN-HLYLVGEQHPTRLIDFEKEYV-------STVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYI 209 (430)
T ss_dssp CCCEEEEETTEEE-EEEEEEBTEEEEEEETTTTEE-------EEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEE
T ss_pred CCCEEEECCCCCC-eEEEEeCCCcEEEEECCCCEE-------EEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEE
Confidence 346889998 355 566665558899999876431 122223456889999984333665554332 2333
Q ss_pred EECCCCccc--ccccccCCCeeEEEecC-CCCcEEEEEeCCCcEEEEeCCCCCC-CcEEecCCCCCeEEEEEcCCCCCEE
Q 015484 243 WDLRTNQTQ--QRVKAHEKEVNYLSFNP-YNEWVLATASSDTTVALFDMRKMTV-PLHILSSHTEEVFQVEWDPNHETVL 318 (406)
Q Consensus 243 ~d~~~~~~~--~~~~~~~~~v~~i~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~i~~~p~~~~~l 318 (406)
++ +.+... ..+. .......++++| ++. ++++-..++.|..++...... .+... ........|+|+|++++++
T Consensus 210 ~~-~~g~~~~~~~l~-~~~~p~giavdp~~g~-lyv~d~~~~~V~~~~~~~~~~~~~~~~-~~~~~P~gia~~pdG~~ly 285 (430)
T 3tc9_A 210 LT-RESGFKVITELT-KGQNCNGAETHPINGE-LYFNSWNAGQVFRYDFTTQETTPLFTI-QDSGWEFHIQFHPSGNYAY 285 (430)
T ss_dssp EE-GGGTSCSEEEEE-ECSSCCCEEECTTTCC-EEEEETTTTEEEEEETTTTEEEEEEEC-SSSSCCEEEEECTTSSEEE
T ss_pred Ee-CCCceeeeeeec-cCCCceEEEEeCCCCE-EEEEECCCCEEEEEECCCCcEEEEEEc-CCCCcceeEEEcCCCCEEE
Confidence 44 333322 2222 233457788999 555 666666778999999875432 11111 1224578999999998667
Q ss_pred EEEeCCCcEEEEeCCC
Q 015484 319 ASSADDRRLMVWDLNR 334 (406)
Q Consensus 319 ~s~~~dg~i~iwd~~~ 334 (406)
++-...+.|..++...
T Consensus 286 v~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 286 IVVVNQHYILRSDYDW 301 (430)
T ss_dssp EEETTTTEEEEEEEET
T ss_pred EEECCCCEEEEEeCCc
Confidence 7777788999988653
No 289
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.69 E-value=0.0064 Score=53.00 Aligned_cols=164 Identities=11% Similarity=0.151 Sum_probs=104.7
Q ss_pred eeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeec------cCccEEEEEe---eCCCCCEE
Q 015484 161 RLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEA------HESVVEDVSW---HLKNENLF 231 (406)
Q Consensus 161 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~------~~~~i~~i~~---~p~~~~~l 231 (406)
.+.....---+++|.+....++++.-..|+|..|+...+... .+ .+.. ....+..|.| .| .++++
T Consensus 7 ~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~----~~-~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~ 80 (334)
T 2p9w_A 7 DVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHF----NV-VIDGASSNGDGEQQMSGLSLLTHDN-SKRLF 80 (334)
T ss_dssp EECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEE----EE-CCTTTCCSSCCSEEEEEEEESSSSS-CCEEE
T ss_pred EecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEE----EE-ecCCccccCCCcceeeEEEEeccCC-CCcEE
Confidence 344444445689998866624555557999999998743211 11 1111 1124578999 57 46777
Q ss_pred EEEec-------------CCcEEEEECC---CCccccccc--c-----------cCCCeeEEEecCCCCcEEEEEeCC-C
Q 015484 232 GSAGD-------------DCQLMIWDLR---TNQTQQRVK--A-----------HEKEVNYLSFNPYNEWVLATASSD-T 281 (406)
Q Consensus 232 ~~~~~-------------dg~i~i~d~~---~~~~~~~~~--~-----------~~~~v~~i~~~~~~~~~l~~~~~d-g 281 (406)
++... +..|..||+. +++.+.... . .....+.++..++|+ ..++++.. +
T Consensus 81 vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~ 159 (334)
T 2p9w_A 81 AVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMP 159 (334)
T ss_dssp EEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSC
T ss_pred EEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCC
Confidence 65432 6789999999 777654332 1 113478999999999 77777777 7
Q ss_pred cEEEEeCCCCCCCcEEec------CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 282 TVALFDMRKMTVPLHILS------SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 282 ~i~vwd~~~~~~~~~~~~------~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
.|..++.... .+..+. ......+.|+++|++.. |++....|.+..+|+..
T Consensus 160 ~I~rV~pdG~--~~~~~~~~~~~~~~~~G~nGIv~~pdg~~-Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 160 AIARVSADGK--TVSTFAWESGNGGQRPGYSGITFDPHSNK-LIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEECTTSC--CEEEEEECCCCSSSCCSCSEEEEETTTTE-EEEESSSSSEEEEECSS
T ss_pred eEEEEeCCCC--EEeeeeecCCCcccccCcceEEEeCCCCE-EEEEcCCCeEEEEcCCC
Confidence 7777776543 122221 11234779999999975 55554499999999874
No 290
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.61 E-value=0.019 Score=55.17 Aligned_cols=55 Identities=9% Similarity=0.003 Sum_probs=36.8
Q ss_pred CcEEEEECCCCcccccccccC----------CCeeEEEec-CCCC--cEEEEEeCCCcEEEEeCCCCCC
Q 015484 238 CQLMIWDLRTNQTQQRVKAHE----------KEVNYLSFN-PYNE--WVLATASSDTTVALFDMRKMTV 293 (406)
Q Consensus 238 g~i~i~d~~~~~~~~~~~~~~----------~~v~~i~~~-~~~~--~~l~~~~~dg~i~vwd~~~~~~ 293 (406)
+.|..+|.++++.+-.+.... .++. +... .+|+ .+++.++.+|.++++|.++++.
T Consensus 278 ~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 345 (599)
T 1w6s_A 278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGAL 345 (599)
T ss_dssp SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred ceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCE
Confidence 479999999998866553221 1221 2222 4552 3678888999999999988764
No 291
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.56 E-value=0.039 Score=52.88 Aligned_cols=55 Identities=9% Similarity=0.021 Sum_probs=37.2
Q ss_pred CcEEEEECCCCcccccccc--cC--------CCeeEEEec-CCCC--cEEEEEeCCCcEEEEeCCCCCC
Q 015484 238 CQLMIWDLRTNQTQQRVKA--HE--------KEVNYLSFN-PYNE--WVLATASSDTTVALFDMRKMTV 293 (406)
Q Consensus 238 g~i~i~d~~~~~~~~~~~~--~~--------~~v~~i~~~-~~~~--~~l~~~~~dg~i~vwd~~~~~~ 293 (406)
+.|..+|.++++.+-.+.. |. .++. +... .+|+ .+++.++.+|.++++|.++++.
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 358 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKL 358 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCE
Confidence 5899999999998766532 21 1221 1221 3453 3788899999999999988664
No 292
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.56 E-value=0.0045 Score=60.52 Aligned_cols=154 Identities=8% Similarity=0.087 Sum_probs=90.8
Q ss_pred EEEecCCCCCeEEEecCCC-------------------eEEEEeCCCccCCceeeeeeeeeccC-------ccEEEEEee
Q 015484 171 GLSWSPFKEGYLVSGSHDN-------------------KICLWDVSALAQDKVIDAMHVYEAHE-------SVVEDVSWH 224 (406)
Q Consensus 171 ~l~~~~~~~~~l~s~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~-------~~i~~i~~~ 224 (406)
.+++.+... .++.++.++ .|..+|..+++.....+. ..|. .+.....+.
T Consensus 234 ~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~----~~~~~wd~~~~~~~~~~d~~ 308 (668)
T 1kv9_A 234 SMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQV----TPGDSWDFTATQQITLAELN 308 (668)
T ss_dssp CEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES----STTCCSCCCCCSCEEEEEEE
T ss_pred ceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeec----CCCccccccCCCCcEEEEec
Confidence 467877766 788877666 389999988764332211 1111 222211222
Q ss_pred CCCCC---EEEEEecCCcEEEEECCCCcccccccccC------------CC------------------------eeEEE
Q 015484 225 LKNEN---LFGSAGDDCQLMIWDLRTNQTQQRVKAHE------------KE------------------------VNYLS 265 (406)
Q Consensus 225 p~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------~~------------------------v~~i~ 265 (406)
. +++ .++.++.+|.++++|.++++.+....... .+ -..++
T Consensus 309 ~-~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a 387 (668)
T 1kv9_A 309 I-DGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMS 387 (668)
T ss_dssp E-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCE
T ss_pred c-CCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcce
Confidence 2 233 67888999999999999998763221100 00 01256
Q ss_pred ecCCCCcEEEEE------------------------------------eCCCcEEEEeCCCCCCCcEEecCCCCCeEEEE
Q 015484 266 FNPYNEWVLATA------------------------------------SSDTTVALFDMRKMTVPLHILSSHTEEVFQVE 309 (406)
Q Consensus 266 ~~~~~~~~l~~~------------------------------------~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~ 309 (406)
++|+.. ++.+. ..+|.|..||+.+++. +-....+ .......
T Consensus 388 ~dp~~g-~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~-~W~~~~~-~~~~~~~ 464 (668)
T 1kv9_A 388 FNPGTG-LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKA-AWKVPYP-THWNGGT 464 (668)
T ss_dssp EETTTT-EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEE-EEEEEES-SSCCCCE
T ss_pred ECCCCC-EEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcE-EEEccCC-CCCcCce
Confidence 777766 43331 1237799999988764 3333222 2222223
Q ss_pred EcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 310 WDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 310 ~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
+...+. +++.++.||.++.||..+
T Consensus 465 ~~t~gg-~vf~g~~dg~l~a~d~~t 488 (668)
T 1kv9_A 465 LSTAGN-LVFQGTAAGQMHAYSADK 488 (668)
T ss_dssp EEETTT-EEEEECTTSEEEEEETTT
T ss_pred eEeCCC-EEEEECCcccchhhhhhc
Confidence 333454 688889999999999987
No 293
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.52 E-value=0.042 Score=48.38 Aligned_cols=236 Identities=7% Similarity=0.013 Sum_probs=117.7
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEE
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLW 194 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 194 (406)
...+..|.|.| + ..+++ +..|.|+. ..+... .+........+...+..+.+.+++. .++.+ .+|.| |
T Consensus 79 ~~~~~~i~~~~-~-~~~~~-g~~g~i~~--S~DgG~----tW~~~~~~~~~~~~~~~i~~~~~~~-~~~~~-~~g~v--~ 145 (327)
T 2xbg_A 79 DYRFNSVSFQG-N-EGWIV-GEPPIMLH--TTDGGQ----SWSQIPLDPKLPGSPRLIKALGNGS-AEMIT-NVGAI--Y 145 (327)
T ss_dssp CCEEEEEEEET-T-EEEEE-EETTEEEE--ESSTTS----SCEECCCCTTCSSCEEEEEEEETTE-EEEEE-TTCCE--E
T ss_pred CccEEEEEecC-C-eEEEE-ECCCeEEE--ECCCCC----CceECccccCCCCCeEEEEEECCCC-EEEEe-CCccE--E
Confidence 34688889886 3 44554 45664443 222111 1211111112234567788776555 55555 45644 3
Q ss_pred eCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEE-EECCCCcccccc-cccCCCeeEEEecCCCCc
Q 015484 195 DVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMI-WDLRTNQTQQRV-KAHEKEVNYLSFNPYNEW 272 (406)
Q Consensus 195 d~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i-~d~~~~~~~~~~-~~~~~~v~~i~~~~~~~~ 272 (406)
....+. .....+. ......+..+.+.| ++.+++++ .+|.+.. .|- .+..-..+ ......+..+.+.+++.
T Consensus 146 ~S~DgG--~tW~~~~--~~~~~~~~~~~~~~-~~~~~~~g-~~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~g~- 217 (327)
T 2xbg_A 146 RTKDSG--KNWQALV--QEAIGVMRNLNRSP-SGEYVAVS-SRGSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTPDGR- 217 (327)
T ss_dssp EESSTT--SSEEEEE--CSCCCCEEEEEECT-TSCEEEEE-TTSSEEEEECT-TCSSCEEEECCSSSCEEEEEECTTSC-
T ss_pred EEcCCC--CCCEEee--cCCCcceEEEEEcC-CCcEEEEE-CCCcEEEEeCC-CCCceeECCCCCCCccceeEECCCCC-
Confidence 222221 1222211 23345688899988 56666555 4455444 332 12222222 22456788899999887
Q ss_pred EEEEEeCCCcEEEEeCC---CCCCCcEEe-cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCC
Q 015484 273 VLATASSDTTVALFDMR---KMTVPLHIL-SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGP 348 (406)
Q Consensus 273 ~l~~~~~dg~i~vwd~~---~~~~~~~~~-~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 348 (406)
++ .++.+|.+++.+.. +... +..- ..+...+..+.+.+++. ++++ +.+|.|. +.... +..-..
T Consensus 218 ~~-~~~~~G~~~~s~~D~G~tW~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~-g~~g~i~-~S~Dg-G~tW~~------- 284 (327)
T 2xbg_A 218 LW-MIVNGGKIAFSDPDNSENWGE-LLSPLRRNSVGFLDLAYRTPNE-VWLA-GGAGALL-CSQDG-GQTWQQ------- 284 (327)
T ss_dssp EE-EEETTTEEEEEETTEEEEECC-CBCTTSSCCSCEEEEEESSSSC-EEEE-ESTTCEE-EESST-TSSCEE-------
T ss_pred EE-EEeCCceEEEecCCCCCeeEe-ccCCcccCCcceEEEEecCCCE-EEEE-eCCCeEE-EeCCC-CcccEE-------
Confidence 44 44567877776421 1111 1110 01234588999998764 4544 4577663 33222 111110
Q ss_pred CeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 349 PELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 349 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
+.........+.++.|.+++. ++.++.+|.|.-++-
T Consensus 285 ---~~~~~~~~~~~~~v~~~~~~~--~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 285 ---DVDVKKVPSNFYKILFFSPDQ--GFILGQKGILLRYVT 320 (327)
T ss_dssp ---CGGGTTSSSCCCEEEEEETTE--EEEECSTTEEEEECC
T ss_pred ---cCccCCCCCCeEEEEEECCCc--eEEEcCCceEEEEcC
Confidence 000001234577888875554 556677897766543
No 294
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.51 E-value=0.0039 Score=57.93 Aligned_cols=172 Identities=9% Similarity=0.119 Sum_probs=100.4
Q ss_pred cEEEEEeeCC-CCCEEEEEecCCcEEEEECCCCcccccccc---cCCCeeEEEe-------cCCCCcEEEEEeCCC----
Q 015484 217 VVEDVSWHLK-NENLFGSAGDDCQLMIWDLRTNQTQQRVKA---HEKEVNYLSF-------NPYNEWVLATASSDT---- 281 (406)
Q Consensus 217 ~i~~i~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~i~~-------~~~~~~~l~~~~~dg---- 281 (406)
....|+|+|. +++++++-...+.|++.|+..+........ .......++| ++++..++++-..++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4678899983 566776666567899999887665433322 1235789999 999984444443332
Q ss_pred --cEEEEeCCC-CCCC----cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCC-------CCCcccccccccCC
Q 015484 282 --TVALFDMRK-MTVP----LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLN-------RIGDEQLELDAEDG 347 (406)
Q Consensus 282 --~i~vwd~~~-~~~~----~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~-------~~~~~~~~~~~~~~ 347 (406)
.|.+++... +... ...+.. -.....++.+|++..++++-..++.|..+|+. .............+
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 266776433 1111 022221 12346778899776777788888999999986 21110000000000
Q ss_pred CCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 348 PPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 348 ~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
....++.. +.......++|+|+|.+++++-.....|+.+++.
T Consensus 299 ~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 299 TFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp TEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 01122222 2234568999999999556666667788886553
No 295
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.50 E-value=0.018 Score=51.12 Aligned_cols=194 Identities=10% Similarity=0.101 Sum_probs=107.1
Q ss_pred CeeEEEecCCCCCeEEEec-------------CCCeEEEEeCCCccCC-ceeeeeee-eeccCccEEEEEeeCC--CC-C
Q 015484 168 EGYGLSWSPFKEGYLVSGS-------------HDNKICLWDVSALAQD-KVIDAMHV-YEAHESVVEDVSWHLK--NE-N 229 (406)
Q Consensus 168 ~v~~l~~~~~~~~~l~s~~-------------~dg~i~iwd~~~~~~~-~~~~~~~~-~~~~~~~i~~i~~~p~--~~-~ 229 (406)
..-.+...|+|. +++++ .+|.|.++|+.+.... ..+..... +....-....+.+.++ +. .
T Consensus 51 G~EDi~~~~~G~--~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 51 GSEDLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp CCCEEEECTTSE--EEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CcceeEEcCCCe--EEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 344666677553 44443 6899999998753211 11211100 1112235566666542 22 3
Q ss_pred EEEEEec--CCcEEEEECCCCcc----cccccc-cCCCeeEEEecCCCCcEEEEEe-----------------CCCcEEE
Q 015484 230 LFGSAGD--DCQLMIWDLRTNQT----QQRVKA-HEKEVNYLSFNPYNEWVLATAS-----------------SDTTVAL 285 (406)
Q Consensus 230 ~l~~~~~--dg~i~i~d~~~~~~----~~~~~~-~~~~v~~i~~~~~~~~~l~~~~-----------------~dg~i~v 285 (406)
++++-.. +..|.+|++..... +..+.+ .-...+.+.+.++|. ++++.. ..|.|.-
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEE
Confidence 4444333 46777877765322 222221 224578899999987 555543 1245555
Q ss_pred EeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeE
Q 015484 286 FDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDF 365 (406)
Q Consensus 286 wd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 365 (406)
+|.. + +..+...-...+.|+|+|+++.+.++-+..+.|..|++...+.... .+ .+.. ....-.+
T Consensus 208 ~d~~--~--~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~--------~~-~~~~---~g~PDGi 271 (355)
T 3sre_A 208 YSPN--D--VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTP--------LR-VLSF---DTLVDNI 271 (355)
T ss_dssp ECTT--C--CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE--------EE-EEEC---SSEEEEE
T ss_pred EECC--e--EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEec--------CE-EEeC---CCCCceE
Confidence 5542 2 3333333346799999999987777777889999999864221110 01 1111 3456788
Q ss_pred EeCC-CCCcEEEEEeCC
Q 015484 366 SWNK-NDPWVISSVADD 381 (406)
Q Consensus 366 ~~s~-~~~~~l~s~~~d 381 (406)
+..+ +|. +.+++..+
T Consensus 272 ~vD~e~G~-lwva~~~~ 287 (355)
T 3sre_A 272 SVDPVTGD-LWVGCHPN 287 (355)
T ss_dssp EECTTTCC-EEEEEESC
T ss_pred EEeCCCCc-EEEEecCC
Confidence 9998 588 56655433
No 296
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.49 E-value=0.012 Score=56.28 Aligned_cols=102 Identities=12% Similarity=0.036 Sum_probs=63.7
Q ss_pred CEEEEEecCCcEEEEECCCCcccccccccC-------------CCe--------------------------eEEEecCC
Q 015484 229 NLFGSAGDDCQLMIWDLRTNQTQQRVKAHE-------------KEV--------------------------NYLSFNPY 269 (406)
Q Consensus 229 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~v--------------------------~~i~~~~~ 269 (406)
.+++.++.+|.++++|.++++.+..+.... .++ ..++++|+
T Consensus 317 ~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~ 396 (571)
T 2ad6_A 317 PLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPE 396 (571)
T ss_dssp EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred EEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCC
Confidence 467778899999999999998765442111 111 23567777
Q ss_pred CCcEEEEEe-------------------------------------CCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcC
Q 015484 270 NEWVLATAS-------------------------------------SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDP 312 (406)
Q Consensus 270 ~~~~l~~~~-------------------------------------~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p 312 (406)
.. ++.+.. .+|.|..||+.+++. +-.+.. ...+.......
T Consensus 397 ~g-~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~-~W~~~~-~~~~~~~~~~t 473 (571)
T 2ad6_A 397 SR-TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKA-KWTKWE-KFAAWGGTLYT 473 (571)
T ss_dssp TT-EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCE-EEEEEE-SSCCCSBCEEE
T ss_pred CC-EEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCE-EEEecC-CCCccceeEEE
Confidence 76 444432 347899999988764 333322 12222222222
Q ss_pred CCCCEEEEEeCCCcEEEEeCCC
Q 015484 313 NHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 313 ~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
.+. +++.++.||.|+.+|..+
T Consensus 474 ~gg-~v~~g~~dg~l~a~D~~t 494 (571)
T 2ad6_A 474 KGG-LVWYATLDGYLKALDNKD 494 (571)
T ss_dssp TTT-EEEEECTTSEEEEEETTT
T ss_pred CCC-EEEEEcCCCeEEEEECCC
Confidence 343 577789999999999987
No 297
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.47 E-value=0.086 Score=50.86 Aligned_cols=161 Identities=8% Similarity=0.072 Sum_probs=103.7
Q ss_pred CCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECC
Q 015484 167 KEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR 246 (406)
Q Consensus 167 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~ 246 (406)
..+.+|+|.+.+..++++-...+.|..++++..... ......-.....+++.+.+++++.+-+..+.|.+.++.
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~------~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~ 422 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQ------FVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLN 422 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE------EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccE------EEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCC
Confidence 457799999866634555556788999988753221 11122224567888887677888887788899999987
Q ss_pred CCcccccccccCCCeeEEEecCCCCcEEEEEeC-CCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 015484 247 TNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS-DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDR 325 (406)
Q Consensus 247 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg 325 (406)
.......+...-.....|+++|....++.+-.. .+.|...++..... .......-...+.|++++.++.+.++=+..+
T Consensus 423 G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~-~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~ 501 (619)
T 3s94_A 423 GTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR-VVLVNTSLGWPNGLALDYDEGKIYWGDAKTD 501 (619)
T ss_dssp SCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc-EEEEeCCCCCCeeeEEcccCCEEEEEECCCC
Confidence 543222222234567899999975535454322 35677777754332 2233333457899999997776666666678
Q ss_pred cEEEEeCCC
Q 015484 326 RLMVWDLNR 334 (406)
Q Consensus 326 ~i~iwd~~~ 334 (406)
.|..+++..
T Consensus 502 ~I~~~~~dG 510 (619)
T 3s94_A 502 KIEVMNTDG 510 (619)
T ss_dssp EEEEEESSS
T ss_pred EEEEEecCC
Confidence 899898865
No 298
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.46 E-value=0.048 Score=48.43 Aligned_cols=201 Identities=12% Similarity=0.157 Sum_probs=112.3
Q ss_pred ceeEEEEcCCCCcEEEEE------------eCCCeEEEEeCCCccccccCCCCCceeeeC-----CCCCeeEEEecC--C
Q 015484 117 EVNRARCMPQKPNLVGTK------------TSSCEVYVFDCAKQAEKQQDDCDPDLRLKG-----HDKEGYGLSWSP--F 177 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~------------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~~~--~ 177 (406)
..-.+...|+| ..++++ ..+|.|.++|..+..... . ...+.+ ..-....+.+.+ +
T Consensus 51 G~EDi~~~~~G-~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~----~-~l~~~g~~~~~~~f~PhGi~~~~d~d 124 (355)
T 3sre_A 51 GSEDLEILPNG-LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV----S-ELEIIGNTLDISSFNPHGISTFIDDD 124 (355)
T ss_dssp CCCEEEECTTS-EEEEEECCC-----------CCEEEEEETTSSSCCE----E-ECEEECSSCCGGGCCEEEEEEEECTT
T ss_pred CcceeEEcCCC-eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce----E-EEEccCCCCCcCceeeeeeEEEECCC
Confidence 45566667766 333333 268999999987532111 1 112222 123556777765 3
Q ss_pred CCCeEEEe-cC--CCeEEEEeCCCccCCceeeeeeeeecc-CccEEEEEeeCCCCCEEEEEe-----------------c
Q 015484 178 KEGYLVSG-SH--DNKICLWDVSALAQDKVIDAMHVYEAH-ESVVEDVSWHLKNENLFGSAG-----------------D 236 (406)
Q Consensus 178 ~~~~l~s~-~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~p~~~~~l~~~~-----------------~ 236 (406)
+..+|+.+ .. +.+|.+|+++.... ....+..+.+. -...+++.+.+ ++.++++.. .
T Consensus 125 g~~~L~Vvnh~~~~s~ielf~~d~~~~--~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~ 201 (355)
T 3sre_A 125 NTVYLLVVNHPGSSSTVEVFKFQEEEK--SLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLA 201 (355)
T ss_dssp CCEEEEEEECSTTCCEEEEEEEETTTT--EEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCC
T ss_pred CcEEEEEEECCCCCCeEEEEEEECCCC--EEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCC
Confidence 43244444 22 56788888766432 22233334332 24678999998 566665543 1
Q ss_pred CCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCC--cEEecCCCCCeEEEEEcC-C
Q 015484 237 DCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVP--LHILSSHTEEVFQVEWDP-N 313 (406)
Q Consensus 237 dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~h~~~v~~i~~~p-~ 313 (406)
.|.|..+|. ++ +..+...-..-+.++|+|+++.++++-+..+.|..|++...... ...+ ...+..-.+++.+ +
T Consensus 202 ~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~ 277 (355)
T 3sre_A 202 WSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVT 277 (355)
T ss_dssp CEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTT
T ss_pred ccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCC
Confidence 245666654 32 22232233557899999999866666667789999998743221 1223 2245678889998 4
Q ss_pred CCCEEEEEeCC-CcEEEEe
Q 015484 314 HETVLASSADD-RRLMVWD 331 (406)
Q Consensus 314 ~~~~l~s~~~d-g~i~iwd 331 (406)
|. +.+++..+ +.|..|+
T Consensus 278 G~-lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 278 GD-LWVGCHPNGMRIFFYD 295 (355)
T ss_dssp CC-EEEEEESCHHHHHSCC
T ss_pred Cc-EEEEecCCceEEEEEC
Confidence 86 55555433 3444443
No 299
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.43 E-value=0.017 Score=55.34 Aligned_cols=52 Identities=10% Similarity=0.075 Sum_probs=31.8
Q ss_pred CCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 280 dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
+|.|.-||+.+++. +-..... .++..-.....+. +++.++.||.++.||.++
T Consensus 465 ~G~l~A~D~~tG~~-~W~~~~~-~~~~~g~~~tagg-lvf~g~~dg~l~A~D~~t 516 (582)
T 1flg_A 465 VGSLRAMDPVSGKV-VWEHKEH-LPLWAGVLATAGN-LVFTGTGDGYFKAFDAKS 516 (582)
T ss_dssp SEEEEEECTTTCCE-EEEEEES-SCCCSCCEEETTT-EEEEECTTSEEEEEETTT
T ss_pred cceEEEEECCCCCE-EEEecCC-CCCcccceEeCCC-EEEEECCCCcEEEEECCC
Confidence 57899999988764 3222211 1111111111243 677799999999999987
No 300
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.34 E-value=0.045 Score=48.13 Aligned_cols=189 Identities=8% Similarity=0.198 Sum_probs=113.8
Q ss_pred eEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCC---CCC---EEEE-Eec--CCcEEEEECC--CCc
Q 015484 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLK---NEN---LFGS-AGD--DCQLMIWDLR--TNQ 249 (406)
Q Consensus 181 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~---~~~---~l~~-~~~--dg~i~i~d~~--~~~ 249 (406)
+++.....+-+.+||+ .++. + +.+. .+.++.+..-|. ++. ++++ ... +++|.+|++. ++.
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~---l---~~~~--~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~ 112 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKM---L---HSYN--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT 112 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCE---E---EEEC--CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred EEEEEcCCCCEEEEcC-CCcE---E---EEcc--CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence 6666677889999999 4432 2 2222 245666665541 111 2233 333 5789999773 332
Q ss_pred ccccccc------cC-CCeeEEEe--cCC-CCcEEEEEeCCCcEEEEeCCCC------CCCcEEecCCCCCeEEEEEcCC
Q 015484 250 TQQRVKA------HE-KEVNYLSF--NPY-NEWVLATASSDTTVALFDMRKM------TVPLHILSSHTEEVFQVEWDPN 313 (406)
Q Consensus 250 ~~~~~~~------~~-~~v~~i~~--~~~-~~~~l~~~~~dg~i~vwd~~~~------~~~~~~~~~h~~~v~~i~~~p~ 313 (406)
+..+.. .. ..+..+++ +|. +..++++...+|.+..|++... ...+..+.. .+.+-.|...+.
T Consensus 113 -l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~ 190 (355)
T 3amr_A 113 -LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDE 190 (355)
T ss_dssp -EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETT
T ss_pred -eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCC
Confidence 333311 11 55666777 774 4456888888899999988431 122455554 457888999987
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEec-CC-CCCeeeEEe--CCCCC-cEEEEEeCCCcEEEEe
Q 015484 314 HETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG-GH-KAKISDFSW--NKNDP-WVISSVADDNTVQVWQ 388 (406)
Q Consensus 314 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~h-~~~v~~~~~--s~~~~-~~l~s~~~dg~i~iw~ 388 (406)
.. .|..+-++.-|..++.+.... ....++.... ++ ...+..|+. .++++ |+++|+-.++.+.+|+
T Consensus 191 ~g-~Lyv~eEd~GIw~~da~p~~~---------~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 191 YG-RLYIAEEDEAIWKFSAEPDGG---------SNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp TT-EEEEEETTTEEEEEECSTTSC---------SCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred CC-eEEEecccceEEEEeCCcCCC---------CCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence 76 488888886665555443110 0123343331 22 236788887 45555 7788876788999999
Q ss_pred CC
Q 015484 389 MT 390 (406)
Q Consensus 389 ~~ 390 (406)
..
T Consensus 261 r~ 262 (355)
T 3amr_A 261 RQ 262 (355)
T ss_dssp SS
T ss_pred CC
Confidence 96
No 301
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.32 E-value=0.08 Score=47.16 Aligned_cols=248 Identities=9% Similarity=0.026 Sum_probs=128.7
Q ss_pred eEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCcee---eeCCCCCeeEEEecCC---CC
Q 015484 106 VEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLR---LKGHDKEGYGLSWSPF---KE 179 (406)
Q Consensus 106 ~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~---~~~h~~~v~~l~~~~~---~~ 179 (406)
+++.....--.....|+|.|++ .+++ +..+|.|++++... . . .+.. ..........|+++|+ +.
T Consensus 19 ~~~~~va~~l~~P~~ia~~pdG-~l~V-~e~~g~I~~~d~~G-~-~------~~~~~~v~~~g~~g~~gia~~pdf~~~g 88 (354)
T 3a9g_A 19 FKISEVASDLEVPWSIAPLGGG-RYLV-TERPGRLVLISPSG-K-K------LVASFDVANVGEAGLLGLALHPEFPKKS 88 (354)
T ss_dssp EEEEEEECSCSCEEEEEEEETT-EEEE-EETTTEEEEECSSC-E-E------EEEECCCCCSTTCSEEEEEECTTTTTSC
T ss_pred eEEEEEeCCCCCCeEEEEcCCC-eEEE-EeCCCEEEEEeCCC-c-e------EeeccceeecCCCceeeEEeCCCCCcCC
Confidence 4444444444678899999998 4444 45669999997332 1 1 1111 1122346789999997 44
Q ss_pred CeEEEecC----C----CeEEEEeCCCccCC-ceeeee-eeeec-cCccEEEEEeeCCCCCEEEEEec------------
Q 015484 180 GYLVSGSH----D----NKICLWDVSALAQD-KVIDAM-HVYEA-HESVVEDVSWHLKNENLFGSAGD------------ 236 (406)
Q Consensus 180 ~~l~s~~~----d----g~i~iwd~~~~~~~-~~~~~~-~~~~~-~~~~i~~i~~~p~~~~~l~~~~~------------ 236 (406)
.|..+.. + +.|..|+....... ...+.+ ..+.. .......++|.| ++.++++.+.
T Consensus 89 -~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~ 166 (354)
T 3a9g_A 89 -WVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSS 166 (354)
T ss_dssp -EEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTC
T ss_pred -EEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCC
Confidence 4444332 3 56777776543110 011111 11111 112346789999 5677766443
Q ss_pred -CCcEEEEECCCCc-------ccccc-cccCCCeeEEEecC-CCCcEEEEEeCCC---cEEEEeCCC-------------
Q 015484 237 -DCQLMIWDLRTNQ-------TQQRV-KAHEKEVNYLSFNP-YNEWVLATASSDT---TVALFDMRK------------- 290 (406)
Q Consensus 237 -dg~i~i~d~~~~~-------~~~~~-~~~~~~v~~i~~~~-~~~~~l~~~~~dg---~i~vwd~~~------------- 290 (406)
.|.|.-++....- ....+ .++ .....++|+| .+. ++++-.... .|.+.....
T Consensus 167 ~~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~-l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~ 244 (354)
T 3a9g_A 167 LAGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGV-MVATEHGPVGHDEVNIILKGGNYGWPLATGKAGR 244 (354)
T ss_dssp CSSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCC-EEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCC
T ss_pred CCeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCC-EEEEecCCCCCcEEEEecCCCcCCCCcccCCCCC
Confidence 2456666654220 01111 122 2346799999 565 544433222 244332111
Q ss_pred --CCCCcEEecCCCCCeEEEEEc-------CCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCC
Q 015484 291 --MTVPLHILSSHTEEVFQVEWD-------PNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAK 361 (406)
Q Consensus 291 --~~~~~~~~~~h~~~v~~i~~~-------p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 361 (406)
...|+..+.........++|. .++ .++++.-..+.|...++...+... .....+.+....
T Consensus 245 ~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~~g~~~----------~~~~~~~~~~~r 313 (354)
T 3a9g_A 245 GEFVDPVIDTGSETWAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFGDNMEVR----------KISTFFKNVFGR 313 (354)
T ss_dssp TTSCCCSEECTTCCCCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEECGGGCEE----------EEEEECTTTSCC
T ss_pred CCCcCCEeecCCCCcCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEECCCCccc----------ceeeeccCCCCC
Confidence 012344442223467888884 345 356666667788888776421110 001112222456
Q ss_pred eeeEEeCCCCCcEEEEEe
Q 015484 362 ISDFSWNKNDPWVISSVA 379 (406)
Q Consensus 362 v~~~~~s~~~~~~l~s~~ 379 (406)
+.++++.|+|. ++++..
T Consensus 314 p~~v~~~pDG~-lyv~~~ 330 (354)
T 3a9g_A 314 LRDVVIDDDGG-ILISTS 330 (354)
T ss_dssp EEEEEECTTSC-EEEEEC
T ss_pred eeEEEECCCCc-EEEEEe
Confidence 89999999997 566653
No 302
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.30 E-value=0.087 Score=50.53 Aligned_cols=147 Identities=10% Similarity=0.067 Sum_probs=84.2
Q ss_pred EEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEE-EEeeCCCCCEEEEEe------cCCcEEEEECCCCcccccc
Q 015484 182 LVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED-VSWHLKNENLFGSAG------DDCQLMIWDLRTNQTQQRV 254 (406)
Q Consensus 182 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~-i~~~p~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~ 254 (406)
|+.++.|+.|..+|..+++......... . .....+.+ -... ++. +++++ .+|.|+.+|.++++.+-.+
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~-~-~~~~~~~ssP~v~--~g~-V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~ 198 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSD-I-KVGSTLTIAPYVV--KDK-VIIGSSGAELGVRGYLTAYDVKTGEQVWRA 198 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCC-G-GGTCBCCSCCEEE--TTE-EEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCC-C-CccceeecCCEEE--CCE-EEEEecccccCCCCeEEEEECCCCcEEEEE
Confidence 8888899999999998886532221100 0 00001111 1112 344 44444 3799999999999876554
Q ss_pred cccCCC-------------------------------------e-eEEEecCCCCcEEEEEeCC----------------
Q 015484 255 KAHEKE-------------------------------------V-NYLSFNPYNEWVLATASSD---------------- 280 (406)
Q Consensus 255 ~~~~~~-------------------------------------v-~~i~~~~~~~~~l~~~~~d---------------- 280 (406)
...... + ..+++.+... ++..+..+
T Consensus 199 ~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g-~vy~g~g~~~p~~~~~r~gd~~y~ 277 (599)
T 1w6s_A 199 YATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTN-LIYFGTGNPAPWNETMRPGDNKWT 277 (599)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTS
T ss_pred cCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCC-EEEEeCCCCccccCcccCCCcccc
Confidence 221100 0 1345566666 66666654
Q ss_pred CcEEEEeCCCCCCCcEEecC--CC--------CCeEEEEEc-CCCC--CEEEEEeCCCcEEEEeCCCCC
Q 015484 281 TTVALFDMRKMTVPLHILSS--HT--------EEVFQVEWD-PNHE--TVLASSADDRRLMVWDLNRIG 336 (406)
Q Consensus 281 g~i~vwd~~~~~~~~~~~~~--h~--------~~v~~i~~~-p~~~--~~l~s~~~dg~i~iwd~~~~~ 336 (406)
+.|..+|.++++. +-.+.. |. .++. +... .+++ .+++.++.+|.+.++|..+..
T Consensus 278 ~sv~Ald~~TG~~-~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 344 (599)
T 1w6s_A 278 MTIFGRDADTGEA-KFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA 344 (599)
T ss_dssp SEEEEEETTTCCE-EEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred ceEEEEeCCCCce-eeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCC
Confidence 3788999988764 333222 21 1222 2222 4552 367788899999999998754
No 303
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.27 E-value=0.069 Score=46.97 Aligned_cols=191 Identities=11% Similarity=0.099 Sum_probs=112.5
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC----CCC--e-EEEecC--CCeEEEEeCCCc
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF----KEG--Y-LVSGSH--DNKICLWDVSAL 199 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~~~--~-l~s~~~--dg~i~iwd~~~~ 199 (406)
.+++.....+-+.+||+... .+..+.. +.++.+..-|. ++. + +++.-. +++|++|++...
T Consensus 41 s~ii~t~k~~gL~Vydl~G~---------~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~ 109 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSLDGK---------MLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGK 109 (355)
T ss_dssp CEEEEEETTTEEEEEETTSC---------EEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTT
T ss_pred cEEEEEcCCCCEEEEcCCCc---------EEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCC
Confidence 34555566778999999542 2333432 55677666552 211 2 233333 579999977422
Q ss_pred cCCceeeeeee----eeccCccEEEEEe--eCCCCC-EEEEEecCCcEEEEECC-------CCcccccccccCCCeeEEE
Q 015484 200 AQDKVIDAMHV----YEAHESVVEDVSW--HLKNEN-LFGSAGDDCQLMIWDLR-------TNQTQQRVKAHEKEVNYLS 265 (406)
Q Consensus 200 ~~~~~~~~~~~----~~~~~~~i~~i~~--~p~~~~-~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~~~~v~~i~ 265 (406)
.. .+..+.. +...-..+..+|+ +|..+. ++++...+|.+..|++. +.+.+.++.. .+.+-.+.
T Consensus 110 ~~--~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~Egcv 186 (355)
T 3amr_A 110 NG--TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMA 186 (355)
T ss_dssp TC--CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEE
T ss_pred CC--ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEE
Confidence 11 1221111 0111145667777 664454 56777888999999883 2344555543 45677888
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCC--C--CcEEec-CC-CCCeEEEEE--cCCCC-CEEEEEeCCCcEEEEeCCC
Q 015484 266 FNPYNEWVLATASSDTTVALFDMRKMT--V--PLHILS-SH-TEEVFQVEW--DPNHE-TVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 266 ~~~~~~~~l~~~~~dg~i~vwd~~~~~--~--~~~~~~-~h-~~~v~~i~~--~p~~~-~~l~s~~~dg~i~iwd~~~ 334 (406)
..+... .|..+-++..|..||.+-.. . .+..+. ++ ...+..|++ .++++ ++|+++-.+++..+||...
T Consensus 187 vDd~~g-~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~ 263 (355)
T 3amr_A 187 ADDEYG-RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG 263 (355)
T ss_dssp EETTTT-EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred EcCCCC-eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence 888777 78888888777777754211 1 132221 22 236888888 45555 5666665788999999963
No 304
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.26 E-value=0.048 Score=49.12 Aligned_cols=145 Identities=10% Similarity=0.198 Sum_probs=91.7
Q ss_pred cCCcEEEEECCCCccccccccc----CCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC---C------Cc--EEecC
Q 015484 236 DDCQLMIWDLRTNQTQQRVKAH----EKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT---V------PL--HILSS 300 (406)
Q Consensus 236 ~dg~i~i~d~~~~~~~~~~~~~----~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~------~~--~~~~~ 300 (406)
.++.||..++......+.+... -..+..+..+|+|. +||..+ +..|.|..+..+. . ++ ..+..
T Consensus 39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~-lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l 116 (452)
T 3pbp_A 39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGD-LLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSI 116 (452)
T ss_dssp ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSS-EEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEG
T ss_pred ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCC-EEEEec-CCeEEEEEecCccccCcccccccccceeEEEc
Confidence 3478888888754444444322 23678899999999 777765 4579998887322 1 01 12221
Q ss_pred ------CCCCeEEEEEcCCCCC--EEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCC
Q 015484 301 ------HTEEVFQVEWDPNHET--VLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDP 372 (406)
Q Consensus 301 ------h~~~v~~i~~~p~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 372 (406)
...+|..+.|+|-+.. .|++-..|+.|++||+........... . ....+........|.+++|.+++-
T Consensus 117 ~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~---k-~~~~fg~d~~~~ev~S~~Fg~~~l 192 (452)
T 3pbp_A 117 DEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLN---K-PNNSFGLDARVNDITDLEFSKDGL 192 (452)
T ss_dssp GGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEES---C-CCSEEESCSSCCCEEEEEECTTSS
T ss_pred CCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchh---c-cccccCCCcccceEEEEEEcCCCc
Confidence 2568999999997543 688999999999999987332221111 1 111234444557799999999654
Q ss_pred cEEEEEe--CCCcEEEE
Q 015484 373 WVISSVA--DDNTVQVW 387 (406)
Q Consensus 373 ~~l~s~~--~dg~i~iw 387 (406)
.|...+ ..|.|+-.
T Consensus 193 -TLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 193 -TLYCLNTTEGGDIFAF 208 (452)
T ss_dssp -CEEEEECTTSCEEEEE
T ss_pred -EEEEEecCCCCCEEEE
Confidence 455534 66776543
No 305
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.25 E-value=0.2 Score=51.96 Aligned_cols=155 Identities=12% Similarity=0.162 Sum_probs=92.9
Q ss_pred CeeEEE---ecCCCCCeEEEec----------CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEE
Q 015484 168 EGYGLS---WSPFKEGYLVSGS----------HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSA 234 (406)
Q Consensus 168 ~v~~l~---~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~ 234 (406)
.+.+++ |..+...+|+.|. ..|.|.+|++.. ..++.+... ..+++|++++-- +++++++.
T Consensus 830 ~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~----~kL~lv~~~-~v~g~v~al~~~--~g~Lla~i 902 (1158)
T 3ei3_A 830 YALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSD----GKLQTVAEK-EVKGAVYSMVEF--NGKLLASI 902 (1158)
T ss_dssp EEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEET----TEEEEEEEE-EESSCEEEEEEE--TTEEEEEE
T ss_pred ceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEEC----CEEEEEEEE-EcCCcCEEEeee--CCEEEEEc
Confidence 344444 3333334888775 358899999873 233333332 246788888744 45555443
Q ss_pred ecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEe--cCCCCCeEEEEEcC
Q 015484 235 GDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHIL--SSHTEEVFQVEWDP 312 (406)
Q Consensus 235 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~h~~~v~~i~~~p 312 (406)
...|++|++...+.+..-..+-..+..+.....++ ++++|..-..|.++..+.....+..+ ..+...++++.+-.
T Consensus 903 --g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~-~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld 979 (1158)
T 3ei3_A 903 --NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGD-FILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILD 979 (1158)
T ss_dssp --TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETT-EEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEE
T ss_pred --CCEEEEEECCCCceEEEEeeccccEEEEEEeccCC-EEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEc
Confidence 46899999986654331111111133223323455 78888887777776554333223322 34556788998876
Q ss_pred CCCCEEEEEeCCCcEEEEeCCC
Q 015484 313 NHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 313 ~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
++ .++.+..+|.+.+.....
T Consensus 980 ~~--t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 980 DD--NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp TT--EEEEEETTSEEEEEEECT
T ss_pred cC--cEEEEcCCCcEEEEecCC
Confidence 55 377899999999998765
No 306
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.17 E-value=0.022 Score=49.34 Aligned_cols=235 Identities=10% Similarity=0.057 Sum_probs=110.1
Q ss_pred cEEEEEe-CC-----CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC-----CeEEEEeCC
Q 015484 129 NLVGTKT-SS-----CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD-----NKICLWDVS 197 (406)
Q Consensus 129 ~~l~~~~-~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-----g~i~iwd~~ 197 (406)
.+++.|+ .+ ..+.+||..+..-.. ...+........++.. ++. +++.|+.+ ..+.+||+.
T Consensus 16 ~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~------~~~~p~~r~~~~~~~~--~~~-l~v~GG~~~~~~~~~~~~~d~~ 86 (301)
T 2vpj_A 16 VLLVVGGFGSQQSPIDVVEKYDPKTQEWSF------LPSITRKRRYVASVSL--HDR-IYVIGGYDGRSRLSSVECLDYT 86 (301)
T ss_dssp EEEEECCEETTTEECCCEEEEETTTTEEEE------CCCCSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCCEEEEETT
T ss_pred EEEEEeCccCCCcceeEEEEEcCCCCeEEe------CCCCChhhccccEEEE--CCE-EEEEcCCCCCccCceEEEEECC
Confidence 4666666 32 368889987643211 1111111111112222 344 77777755 468899987
Q ss_pred CccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC-----CcEEEEECCCCcccc--cccccCCCeeEEEecCCC
Q 015484 198 ALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD-----CQLMIWDLRTNQTQQ--RVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~~~~--~~~~~~~~v~~i~~~~~~ 270 (406)
+.... ....+.......... +++.. ++.+++.|+.+ ..+.+||+.+.+-.. .+......-..+.+ ++
T Consensus 87 ~~~~~-~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~ 160 (301)
T 2vpj_A 87 ADEDG-VWYSVAPMNVRRGLA-GATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SG 160 (301)
T ss_dssp CCTTC-CCEEECCCSSCCBSC-EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TT
T ss_pred CCCCC-eeEECCCCCCCccce-eEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CC
Confidence 75410 011111111111111 12222 46777777754 358889987765322 11111111122222 34
Q ss_pred CcEEEEEeCC-----CcEEEEeCCCCCCC-cEEecCCCCCeEEEEEcCCCCCEEEEEeCC-----CcEEEEeCCCCCccc
Q 015484 271 EWVLATASSD-----TTVALFDMRKMTVP-LHILSSHTEEVFQVEWDPNHETVLASSADD-----RRLMVWDLNRIGDEQ 339 (406)
Q Consensus 271 ~~~l~~~~~d-----g~i~vwd~~~~~~~-~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d-----g~i~iwd~~~~~~~~ 339 (406)
. +++.|+.+ ..+.+||+.+..-. +..+.........+.+ ++ .+++.|+.+ ..+.+||+.+..-..
T Consensus 161 ~-iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 236 (301)
T 2vpj_A 161 V-IYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--ND-HIYVVGGFDGTAHLSSVEAYNIRTDSWTT 236 (301)
T ss_dssp E-EEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred E-EEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CC-EEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence 4 77777654 36889998764310 1111111111222232 33 467777654 468888887522110
Q ss_pred ccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCC-----CcEEEEeCCCcccCCC
Q 015484 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADD-----NTVQVWQMTDSIYRDD 397 (406)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~d-----g~i~iw~~~~~~~~~~ 397 (406)
+............+.+ ++. +++.|+.+ ..+.+||+.++.+...
T Consensus 237 ------------~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 284 (301)
T 2vpj_A 237 ------------VTSMTTPRCYVGATVL--RGR-LYAIAGYDGNSLLSSIECYDPIIDSWEVV 284 (301)
T ss_dssp ------------ECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBEEEEEEEETTTTEEEEE
T ss_pred ------------CCCCCCcccceeEEEE--CCE-EEEEcCcCCCcccccEEEEcCCCCeEEEc
Confidence 0000000111112222 455 67777765 4578899988776543
No 307
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.17 E-value=0.03 Score=48.55 Aligned_cols=191 Identities=14% Similarity=0.103 Sum_probs=91.4
Q ss_pred CCCeEEEecCC-----CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC-----cEEEEECCC
Q 015484 178 KEGYLVSGSHD-----NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC-----QLMIWDLRT 247 (406)
Q Consensus 178 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg-----~i~i~d~~~ 247 (406)
+. +++.|+.+ ..+.+||..+.. ...+.......... +++.. ++.+++.|+.++ .+.+||+.+
T Consensus 62 ~~-lyv~GG~~~~~~~~~~~~~d~~~~~----W~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~ 133 (302)
T 2xn4_A 62 GL-VFAVGGFNGSLRVRTVDSYDPVKDQ----WTSVANMRDRRSTL-GAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKS 133 (302)
T ss_dssp TE-EEEESCBCSSSBCCCEEEEETTTTE----EEEECCCSSCCBSC-EEEEE--TTEEEEEEEECSSCEEEEEEEEETTT
T ss_pred CE-EEEEeCcCCCccccceEEECCCCCc----eeeCCCCCccccce-EEEEE--CCEEEEEcCCCCCccCceEEEEeCCC
Confidence 44 77777754 357888887643 21111111111111 12222 467777887654 477889877
Q ss_pred Ccccc--cccccCCCeeEEEecCCCCcEEEEEeCC-------CcEEEEeCCCCCC-CcEEecCCCCCeEEEEEcCCCCCE
Q 015484 248 NQTQQ--RVKAHEKEVNYLSFNPYNEWVLATASSD-------TTVALFDMRKMTV-PLHILSSHTEEVFQVEWDPNHETV 317 (406)
Q Consensus 248 ~~~~~--~~~~~~~~v~~i~~~~~~~~~l~~~~~d-------g~i~vwd~~~~~~-~~~~~~~h~~~v~~i~~~p~~~~~ 317 (406)
.+-.. .+.........+.+ ++. +++.|+.+ ..+.+||+.+..- .+..+.........+.+ ++ .+
T Consensus 134 ~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~i 207 (302)
T 2xn4_A 134 NEWFHVAPMNTRRSSVGVGVV--GGL-LYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NN-LL 207 (302)
T ss_dssp TEEEEECCCSSCCBSCEEEEE--TTE-EEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EE
T ss_pred CeEeecCCCCCcccCceEEEE--CCE-EEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CC-EE
Confidence 64321 12111111122222 344 66666542 3588999876431 01111111111222222 33 46
Q ss_pred EEEEeCC-----CcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCC-----cEEEE
Q 015484 318 LASSADD-----RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDN-----TVQVW 387 (406)
Q Consensus 318 l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg-----~i~iw 387 (406)
++.|+.+ ..+.+||+.+..-... ...+.. ...| ..+.+ ++. +++.|+.++ .+.+|
T Consensus 208 yv~GG~~~~~~~~~~~~yd~~~~~W~~~----~~~~~~----r~~~----~~~~~--~~~-i~v~GG~~~~~~~~~v~~y 272 (302)
T 2xn4_A 208 YAVGGHDGPLVRKSVEVYDPTTNAWRQV----ADMNMC----RRNA----GVCAV--NGL-LYVVGGDDGSCNLASVEYY 272 (302)
T ss_dssp EEECCBSSSSBCCCEEEEETTTTEEEEE----CCCSSC----CBSC----EEEEE--TTE-EEEECCBCSSSBCCCEEEE
T ss_pred EEECCCCCCcccceEEEEeCCCCCEeeC----CCCCCc----cccC----eEEEE--CCE-EEEECCcCCCcccccEEEE
Confidence 7777654 3688888865221100 000000 0111 11222 444 677777653 48999
Q ss_pred eCCCcccCCC
Q 015484 388 QMTDSIYRDD 397 (406)
Q Consensus 388 ~~~~~~~~~~ 397 (406)
|+.++.+...
T Consensus 273 d~~~~~W~~~ 282 (302)
T 2xn4_A 273 NPTTDKWTVV 282 (302)
T ss_dssp ETTTTEEEEC
T ss_pred cCCCCeEEEC
Confidence 9998876543
No 308
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.15 E-value=0.036 Score=48.15 Aligned_cols=229 Identities=7% Similarity=0.019 Sum_probs=110.5
Q ss_pred cEEEEEeC--CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC----CeEEEEeCCCccCC
Q 015484 129 NLVGTKTS--SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD----NKICLWDVSALAQD 202 (406)
Q Consensus 129 ~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~ 202 (406)
.+++.|+. ...+.+||.....-.. ...+........++.+ ++. +++.|+.+ ..+.+||+.+..-
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~------~~~~p~~r~~~~~~~~--~~~-lyv~GG~~~~~~~~~~~~d~~~~~W- 82 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTD------IRCPFEKRRDAACVFW--DNV-VYILGGSQLFPIKRMDCYNVVKDSW- 82 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEE------CCCCSCCCBSCEEEEE--TTE-EEEECCBSSSBCCEEEEEETTTTEE-
T ss_pred eEEEEeCCCCCceEEEecCCCCCEec------CCCCCcccceeEEEEE--CCE-EEEEeCCCCCCcceEEEEeCCCCeE-
Confidence 56666664 3568889988743221 1111111111122222 344 77777754 6788888877432
Q ss_pred ceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC------CcEEEEECCCCcccc--cccccCCCeeEEEecCCCCcEE
Q 015484 203 KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD------CQLMIWDLRTNQTQQ--RVKAHEKEVNYLSFNPYNEWVL 274 (406)
Q Consensus 203 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d------g~i~i~d~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~l 274 (406)
..+........... ++.. ++.+++.|+.+ ..+.+||+.+.+-.. .+......-..+.+ ++. ++
T Consensus 83 ---~~~~~~p~~r~~~~-~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~-iy 153 (306)
T 3ii7_A 83 ---YSKLGPPTPRDSLA-ACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGL-IY 153 (306)
T ss_dssp ---EEEECCSSCCBSCE-EEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE-EE
T ss_pred ---EECCCCCcccccee-EEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCE-EE
Confidence 11111111111111 2222 56777787765 458899988765321 12111111122222 344 66
Q ss_pred EEEeC---------CCcEEEEeCCCCCCCcEEec---CCCCCeEEEEEcCCCCCEEEEEeCC-----CcEEEEeCCCCCc
Q 015484 275 ATASS---------DTTVALFDMRKMTVPLHILS---SHTEEVFQVEWDPNHETVLASSADD-----RRLMVWDLNRIGD 337 (406)
Q Consensus 275 ~~~~~---------dg~i~vwd~~~~~~~~~~~~---~h~~~v~~i~~~p~~~~~l~s~~~d-----g~i~iwd~~~~~~ 337 (406)
+.|+. -..+.+||+.+.. -..+. .....-..+.+ ++ .+++.|+.+ ..+.+||+.+..-
T Consensus 154 v~GG~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~~~~yd~~~~~W 228 (306)
T 3ii7_A 154 VCGGSLGNNVSGRVLNSCEVYDPATET--WTELCPMIEARKNHGLVFV--KD-KIFAVGGQNGLGGLDNVEYYDIKLNEW 228 (306)
T ss_dssp EECCEESCTTTCEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE--TT-EEEEECCEETTEEBCCEEEEETTTTEE
T ss_pred EECCCCCCCCcccccceEEEeCCCCCe--EEECCCccchhhcceEEEE--CC-EEEEEeCCCCCCCCceEEEeeCCCCcE
Confidence 66653 3458899987643 11111 11111122222 34 367776653 3578888875221
Q ss_pred ccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCC-----CcEEEEeCCCcccCC
Q 015484 338 EQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADD-----NTVQVWQMTDSIYRD 396 (406)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~d-----g~i~iw~~~~~~~~~ 396 (406)
... .. ..........+.+ ++. +++.|+.+ ..+.+||+.+..+..
T Consensus 229 ~~~----~~--------~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~~~~yd~~~~~W~~ 277 (306)
T 3ii7_A 229 KMV----SP--------MPWKGVTVKCAAV--GSI-VYVLAGFQGVGRLGHILEYNTETDKWVA 277 (306)
T ss_dssp EEC----CC--------CSCCBSCCEEEEE--TTE-EEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred EEC----CC--------CCCCccceeEEEE--CCE-EEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence 100 00 0001111122222 444 77777754 568999998887654
No 309
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.95 E-value=0.056 Score=47.18 Aligned_cols=181 Identities=12% Similarity=0.091 Sum_probs=85.2
Q ss_pred EEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCC-CCeeEEEecCCCCCeEEEecC----C-------CeEEEEeCC
Q 015484 130 LVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHD-KEGYGLSWSPFKEGYLVSGSH----D-------NKICLWDVS 197 (406)
Q Consensus 130 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~----d-------g~i~iwd~~ 197 (406)
+++.|+ ..+.+||..+.. +.. ..+.... ..-.+++. .++. +++.|+. + ..+.+||..
T Consensus 7 l~~~GG--~~~~~yd~~~~~------W~~-~~~~~p~~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~d~~ 75 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANE------CYC-ASLSSQVPKNHVSLVT-KENQ-VFVAGGLFYNEDNKEDPMSAYFLQFDHL 75 (315)
T ss_dssp EEEEET--TEEEEEETTTTE------EEE-EECCCCSCSSEEEEEC-TTCC-EEEEEEEEECSSCSSSCEEEEEEEEETT
T ss_pred EEEEcC--CceEEECCCCCe------Eec-CCCCCCCCccceEEEE-ECCE-EEEEcCcccCCCCCccccccceEEecCC
Confidence 455665 469999998743 211 1121111 11222332 3444 7777763 1 126778877
Q ss_pred CccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC--------CcEEEEECCCCccc--ccccccCCCeeEEEec
Q 015484 198 ALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD--------CQLMIWDLRTNQTQ--QRVKAHEKEVNYLSFN 267 (406)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d--------g~i~i~d~~~~~~~--~~~~~~~~~v~~i~~~ 267 (406)
+..- ..+......... .+++.. ++.+++.|+.+ ..+.+||+.+.+-. ..+......-..+.
T Consensus 76 ~~~W----~~~~~~p~~r~~-~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-- 146 (315)
T 4asc_A 76 DSEW----LGMPPLPSPRCL-FGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-- 146 (315)
T ss_dssp TTEE----EECCCBSSCEES-CEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--
T ss_pred CCeE----EECCCCCcchhc-eeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--
Confidence 6431 111111111111 112222 56777777743 45889998876432 22221111112222
Q ss_pred CCCCcEEEEEeC-C-----CcEEEEeCCCCCC-CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC-----cEEEEeCCC
Q 015484 268 PYNEWVLATASS-D-----TTVALFDMRKMTV-PLHILSSHTEEVFQVEWDPNHETVLASSADDR-----RLMVWDLNR 334 (406)
Q Consensus 268 ~~~~~~l~~~~~-d-----g~i~vwd~~~~~~-~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg-----~i~iwd~~~ 334 (406)
-++. +++.|+. + ..+.+||+.+..- .+..+......-..+.+ ++ .+++.|+.++ .+.+||+.+
T Consensus 147 ~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~ 221 (315)
T 4asc_A 147 HMDL-VYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DG-RIIVAAGVTDTGLTSSAEVYSITD 221 (315)
T ss_dssp ETTE-EEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT-EEEEEEEECSSSEEEEEEEEETTT
T ss_pred ECCE-EEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CC-EEEEEeccCCCCccceEEEEECCC
Confidence 2344 7777765 2 3689999876421 01111111111222222 34 4677777554 477888865
No 310
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.92 E-value=0.2 Score=44.51 Aligned_cols=253 Identities=9% Similarity=0.045 Sum_probs=124.4
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC---CCCeEEEe-cC---
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF---KEGYLVSG-SH--- 187 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~~l~s~-~~--- 187 (406)
-.....|+|.|++..+++ +...|.|++++............ + ............|+++|+ +. .|..+ +.
T Consensus 17 l~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~g~~~~~~~~~-~-~v~~~g~~g~~gia~~pdf~~~g-~lYv~~~~~~~ 92 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLI-TLRGGELRHWQAGKGLSAPLSGV-P-DVWAHGQGGLLDVVLAPDFAQSR-RIWLSYSEVGD 92 (353)
T ss_dssp ESSEEEEEECSTTCCEEE-EETTTEEEEEETTTEECCCCBSC-C-CCCCSTTCSEEEEEECTTHHHHC-EEEEEEEEECS
T ss_pred CCCcEEEEEcCCCCEEEE-EeCCceEEEEeCCCceeeEecCC-c-ccccCCCCCceeEEECCCCCCCC-EEEEEEeCCCC
Confidence 356789999999942554 45679999998543211000000 0 011122345689999995 44 44443 22
Q ss_pred ----CCeEEEEeCCCccCC-ceeeee-eeee---ccCccEEEEEeeCCCCCEEEEEecC-------------CcEEEEEC
Q 015484 188 ----DNKICLWDVSALAQD-KVIDAM-HVYE---AHESVVEDVSWHLKNENLFGSAGDD-------------CQLMIWDL 245 (406)
Q Consensus 188 ----dg~i~iwd~~~~~~~-~~~~~~-~~~~---~~~~~i~~i~~~p~~~~~l~~~~~d-------------g~i~i~d~ 245 (406)
...|..|++...... ...+.+ ..+. ........++|.| ++.++++.+.. |.|.-++.
T Consensus 93 ~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~ 171 (353)
T 2g8s_A 93 DGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTD 171 (353)
T ss_dssp SSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEET
T ss_pred CCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECC
Confidence 235666666532110 011111 1111 1112246799999 56666665442 46777776
Q ss_pred CCCc------------ccccccccCCCeeEEEecC-CCCcEEEEEeC-CCcEEEEeCCCC--------------------
Q 015484 246 RTNQ------------TQQRVKAHEKEVNYLSFNP-YNEWVLATASS-DTTVALFDMRKM-------------------- 291 (406)
Q Consensus 246 ~~~~------------~~~~~~~~~~~v~~i~~~~-~~~~~l~~~~~-dg~i~vwd~~~~-------------------- 291 (406)
...- ....+...-.....++|+| .+. ++++-.. ++.=.|.-+..+
T Consensus 172 dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~-l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~ 250 (353)
T 2g8s_A 172 QGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNA-LWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIP 250 (353)
T ss_dssp TSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTE-EEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCT
T ss_pred CCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCC-EEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccC
Confidence 5321 1111211123467899999 555 4443221 211122211111
Q ss_pred ----------CCCcEEecCCCCCeEEEEEcC-------CCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEE
Q 015484 292 ----------TVPLHILSSHTEEVFQVEWDP-------NHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFS 354 (406)
Q Consensus 292 ----------~~~~~~~~~h~~~v~~i~~~p-------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 354 (406)
..|+..+.. ...+..+.|.. ++ .++++.-..+.|...++.. .... .....
T Consensus 251 ~~~~~~~~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g-~l~v~~~~~~~v~~~~~~~-~~~~----------~~~~~ 317 (353)
T 2g8s_A 251 EAKGEIVAGTEQPVFYWKD-SPAVSGMAFYNSDKFPQWQQ-KLFIGALKDKDVIVMSVNG-DKVT----------EDGRI 317 (353)
T ss_dssp TCCBSSCTTSCCCSEEESS-CCCEEEEEEECCSSSGGGTT-EEEEEETTTTEEEEEEEET-TEEE----------EEEEE
T ss_pred cccCCCCCCccCCeEEeCC-CcCcceeEEECCccCcccCC-cEEEEEccCCEEEEEEeCC-CeEe----------eeEEc
Confidence 122333332 34677888864 34 3566666677777777653 1100 00011
Q ss_pred ecCCCCCeeeEEeCCCCCcEEEEEe-CCCcEEEEeC
Q 015484 355 HGGHKAKISDFSWNKNDPWVISSVA-DDNTVQVWQM 389 (406)
Q Consensus 355 ~~~h~~~v~~~~~s~~~~~~l~s~~-~dg~i~iw~~ 389 (406)
+......+.++++.|+|. ++++.. .+| +||.+
T Consensus 318 ~~~~~~rp~~v~~~pdG~-lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 318 LTDRGQRIRDVRTGPDGY-LYVLTDESSG--ELLKV 350 (353)
T ss_dssp SGGGCCCEEEEEECTTSC-EEEEECSTTE--EEEEE
T ss_pred ccCCCCceeEEEECCCCc-EEEEEeCCCC--EEEEE
Confidence 122234789999999998 555433 334 45554
No 311
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.77 E-value=0.28 Score=44.26 Aligned_cols=145 Identities=13% Similarity=0.191 Sum_probs=90.0
Q ss_pred CCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeee-ccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccc---
Q 015484 176 PFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYE-AHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ--- 251 (406)
Q Consensus 176 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~--- 251 (406)
.+|. .++.+ .++.||.-++..... .+.+..-. -.-..|..+..+| ++.++|..+. ..|.+..+..+...
T Consensus 30 ~n~t-~i~~a-~~n~iR~~~i~~~~~---Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g~-~~V~Vv~LP~~~~~~~~ 102 (452)
T 3pbp_A 30 QNGT-RIVFI-QDNIIRWYNVLTDSL---YHSLNFSRHLVLDDTFHVISST-SGDLLCLFND-NEIFVMEVPWGYSNVED 102 (452)
T ss_dssp TTTT-EEEEE-ETTEEEEEETTTCSS---CEEEECTTTCCCCTTCEEEECT-TSSEEEEECS-SEEEEEECCTTCSCCCC
T ss_pred cCCC-EEEEE-ECCEEEEEECCCCCc---ceEEecCcccccCceeEEEECC-CCCEEEEecC-CeEEEEEecCccccCcc
Confidence 3444 45555 347888878775322 21111110 0112567799998 7888877654 57999888733211
Q ss_pred ---------ccccc------cCCCeeEEEecCCCCc--EEEEEeCCCcEEEEeCCC-CCCCcEEec---------CCCCC
Q 015484 252 ---------QRVKA------HEKEVNYLSFNPYNEW--VLATASSDTTVALFDMRK-MTVPLHILS---------SHTEE 304 (406)
Q Consensus 252 ---------~~~~~------~~~~v~~i~~~~~~~~--~l~~~~~dg~i~vwd~~~-~~~~~~~~~---------~h~~~ 304 (406)
+.+.. ...+|..+.|||.+.. .|++-..|+.|++||+.. ...|. .+. .....
T Consensus 103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~e 181 (452)
T 3pbp_A 103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVND 181 (452)
T ss_dssp HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCC
T ss_pred cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccce
Confidence 11111 2467999999997543 899999999999999986 23333 332 22256
Q ss_pred eEEEEEcCCCCCEEEEEe--CCCcEEE
Q 015484 305 VFQVEWDPNHETVLASSA--DDRRLMV 329 (406)
Q Consensus 305 v~~i~~~p~~~~~l~s~~--~dg~i~i 329 (406)
|.+++|.+++=+ |...+ ..|.|+-
T Consensus 182 v~S~~Fg~~~lT-LYvl~~t~~GDIYA 207 (452)
T 3pbp_A 182 ITDLEFSKDGLT-LYCLNTTEGGDIFA 207 (452)
T ss_dssp EEEEEECTTSSC-EEEEECTTSCEEEE
T ss_pred EEEEEEcCCCcE-EEEEecCCCCCEEE
Confidence 889999997654 44543 6777754
No 312
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.65 E-value=0.12 Score=44.84 Aligned_cols=231 Identities=5% Similarity=0.000 Sum_probs=107.8
Q ss_pred cEEEEEeC----CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC----C-----CeEEEEe
Q 015484 129 NLVGTKTS----SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH----D-----NKICLWD 195 (406)
Q Consensus 129 ~~l~~~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~----d-----g~i~iwd 195 (406)
.+++.|+. -..+.+||..+..-.. ...+...... .+++.. ++. +++.|+. + ..+.+||
T Consensus 26 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~------~~~~p~~r~~-~~~~~~-~~~-lyv~GG~~~~~~~~~~~~~~~~~d 96 (308)
T 1zgk_A 26 LIYTAGGYFRQSLSYLEAYNPSNGTWLR------LADLQVPRSG-LAGCVV-GGL-LYAVGGRNNSPDGNTDSSALDCYN 96 (308)
T ss_dssp CEEEECCBSSSBCCCEEEEETTTTEEEE------CCCCSSCCBS-CEEEEE-TTE-EEEECCEEEETTEEEECCCEEEEE
T ss_pred EEEEEeCcCCCCcceEEEEcCCCCeEeE------CCCCCccccc-ceEEEE-CCE-EEEECCCcCCCCCCeecceEEEEC
Confidence 56666663 2358888887643221 1111111111 122222 344 6777765 2 4578888
Q ss_pred CCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC-----CcEEEEECCCCcccc--cccccCCCeeEEEecC
Q 015484 196 VSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD-----CQLMIWDLRTNQTQQ--RVKAHEKEVNYLSFNP 268 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~~~~--~~~~~~~~v~~i~~~~ 268 (406)
+.+.. ...+............+. . ++.+++.|+.+ ..+.+||+.+.+-.. .+......-..+.+
T Consensus 97 ~~~~~----W~~~~~~p~~r~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-- 167 (308)
T 1zgk_A 97 PMTNQ----WSPCAPMSVPRNRIGVGV-I--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-- 167 (308)
T ss_dssp TTTTE----EEECCCCSSCCBTCEEEE-E--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--
T ss_pred CCCCe----EeECCCCCcCccccEEEE-E--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--
Confidence 87643 111111111111112222 2 46777777643 358889988764321 22211112222223
Q ss_pred CCCcEEEEEeCC-----CcEEEEeCCCCCC-CcEEecCCCCCeEEEEEcCCCCCEEEEEeCC-----CcEEEEeCCCCCc
Q 015484 269 YNEWVLATASSD-----TTVALFDMRKMTV-PLHILSSHTEEVFQVEWDPNHETVLASSADD-----RRLMVWDLNRIGD 337 (406)
Q Consensus 269 ~~~~~l~~~~~d-----g~i~vwd~~~~~~-~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d-----g~i~iwd~~~~~~ 337 (406)
++. +++.|+.+ ..+.+||+.+..- .+..+.........+.+ ++ .+++.|+.+ ..+.+||+.+..-
T Consensus 168 ~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W 243 (308)
T 1zgk_A 168 NRL-LYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HN-CIYAAGGYDGQDQLNSVERYDVETETW 243 (308)
T ss_dssp TTE-EEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCE-EEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CC-EEEEEeCCCCCCccceEEEEeCCCCcE
Confidence 344 77777654 3688999876431 01111111112222333 34 467777654 4588888875221
Q ss_pred ccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCC-----CcEEEEeCCCcccCC
Q 015484 338 EQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADD-----NTVQVWQMTDSIYRD 396 (406)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~d-----g~i~iw~~~~~~~~~ 396 (406)
... . . ..........+.. ++. +++.|+.+ ..+.+||+.+..+..
T Consensus 244 ~~~--~--~--------~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 292 (308)
T 1zgk_A 244 TFV--A--P--------MKHRRSALGITVH--QGR-IYVLGGYDGHTFLDSVECYDPDTDTWSE 292 (308)
T ss_dssp EEC--C--C--------CSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred EEC--C--C--------CCCCccceEEEEE--CCE-EEEEcCcCCCcccceEEEEcCCCCEEee
Confidence 100 0 0 0000011111222 344 67777644 458899998887654
No 313
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.41 E-value=0.44 Score=41.73 Aligned_cols=237 Identities=9% Similarity=0.013 Sum_probs=118.2
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCcee-eeCCCCCeeEEEecCCCCCeEEEecCCCeE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLR-LKGHDKEGYGLSWSPFKEGYLVSGSHDNKI 191 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 191 (406)
+-...+.+|.|.+.+ ..+++ +..|.|.. ..... . .+..... .......+.+|.+.+ +. .++ ++..|.|
T Consensus 33 ~~~~~~~~v~~~~~~-~~~~~-G~~g~i~~-s~DgG-~----tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~-~g~~g~i 101 (327)
T 2xbg_A 33 PTTATILDMSFIDRH-HGWLV-GVNATLME-TRDGG-Q----TWEPRTLVLDHSDYRFNSVSFQG-NE-GWI-VGEPPIM 101 (327)
T ss_dssp SCSSCEEEEEESSSS-CEEEE-ETTTEEEE-ESSTT-S----SCEECCCCCSCCCCEEEEEEEET-TE-EEE-EEETTEE
T ss_pred CCCCcEEEEEECCCC-cEEEE-cCCCeEEE-eCCCC-C----CCeECCCCCCCCCccEEEEEecC-Ce-EEE-EECCCeE
Confidence 344678999988766 45664 45675532 22221 1 1211111 112345688999976 33 444 4556754
Q ss_pred EEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-cccCCCeeEEEecCCC
Q 015484 192 CLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKEVNYLSFNPYN 270 (406)
Q Consensus 192 ~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~i~~~~~~ 270 (406)
.. ..+.++ ....+.....+...+..+.+.+ ++.+++++ .+|.|.. ....++.-... ......+..+.+.|++
T Consensus 102 ~~-S~DgG~---tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~ 174 (327)
T 2xbg_A 102 LH-TTDGGQ---SWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSG 174 (327)
T ss_dssp EE-ESSTTS---SCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTS
T ss_pred EE-ECCCCC---CceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCC
Confidence 33 222222 2221111111234567777765 45555544 4565432 22334432222 2344578899999988
Q ss_pred CcEEEEEeCCCcEEE-EeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCC
Q 015484 271 EWVLATASSDTTVAL-FDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349 (406)
Q Consensus 271 ~~~l~~~~~dg~i~v-wd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (406)
. +++++. .|.+.. .|-. +..-...-......+..+.+.+++. +..++.+|.+.+.+... +....... .+
T Consensus 175 ~-~~~~g~-~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~--~~~~~~~G~~~~s~~D~-G~tW~~~~---~~- 244 (327)
T 2xbg_A 175 E-YVAVSS-RGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGR--LWMIVNGGKIAFSDPDN-SENWGELL---SP- 244 (327)
T ss_dssp C-EEEEET-TSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSC--EEEEETTTEEEEEETTE-EEEECCCB---CT-
T ss_pred c-EEEEEC-CCcEEEEeCCC-CCceeECCCCCCCccceeEECCCCC--EEEEeCCceEEEecCCC-CCeeEecc---CC-
Confidence 7 666554 454443 3421 1110111223456789999999885 44556688877764221 11000000 00
Q ss_pred eeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcE
Q 015484 350 ELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTV 384 (406)
Q Consensus 350 ~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i 384 (406)
. ..+...+.++.+.+++. +++++ .+|.|
T Consensus 245 ~-----~~~~~~~~~v~~~~~~~-~~~~g-~~g~i 272 (327)
T 2xbg_A 245 L-----RRNSVGFLDLAYRTPNE-VWLAG-GAGAL 272 (327)
T ss_dssp T-----SSCCSCEEEEEESSSSC-EEEEE-STTCE
T ss_pred c-----ccCCcceEEEEecCCCE-EEEEe-CCCeE
Confidence 0 01123478888988776 55554 46766
No 314
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.34 E-value=0.21 Score=43.56 Aligned_cols=102 Identities=9% Similarity=0.110 Sum_probs=50.2
Q ss_pred CCCEEEEEecC-------CcEEEEECCCCcccc--cccccCCCeeEEEecCCCCcEEEEEeC------CCcEEEEeCCCC
Q 015484 227 NENLFGSAGDD-------CQLMIWDLRTNQTQQ--RVKAHEKEVNYLSFNPYNEWVLATASS------DTTVALFDMRKM 291 (406)
Q Consensus 227 ~~~~l~~~~~d-------g~i~i~d~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~l~~~~~------dg~i~vwd~~~~ 291 (406)
++.+++.|+.+ ..+.+||+.+.+-.. .+......- +++. .++. +++.|+. -..+.+||+.+.
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~ 185 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH-NVIS-HNGM-IYCLGGKTDDKKCTNRVFIYNPKKG 185 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC-EEEE-ETTE-EEEECCEESSSCBCCCEEEEETTTT
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc-EEEE-ECCE-EEEEcCCCCCCCccceEEEEcCCCC
Confidence 56777787754 247888988764322 111111111 1222 2344 6666653 235899998764
Q ss_pred CC-CcEEecCCCCCeEEEEEcCCCCCEEEEEeCC-----CcEEEEeCCC
Q 015484 292 TV-PLHILSSHTEEVFQVEWDPNHETVLASSADD-----RRLMVWDLNR 334 (406)
Q Consensus 292 ~~-~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d-----g~i~iwd~~~ 334 (406)
.- .+..+.........+.+ ++ .+++.|+.+ ..+.+||+.+
T Consensus 186 ~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~ 231 (318)
T 2woz_A 186 DWKDLAPMKTPRSMFGVAIH--KG-KIVIAGGVTEDGLSASVEAFDLKT 231 (318)
T ss_dssp EEEEECCCSSCCBSCEEEEE--TT-EEEEEEEEETTEEEEEEEEEETTT
T ss_pred EEEECCCCCCCcccceEEEE--CC-EEEEEcCcCCCCccceEEEEECCC
Confidence 31 01111111111122222 33 467777643 3467888765
No 315
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.29 E-value=0.49 Score=41.08 Aligned_cols=234 Identities=11% Similarity=0.182 Sum_probs=134.9
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCC--CCCeeEEEecCCCCCeEEEecCCCeEEEEeCCC
Q 015484 121 ARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGH--DKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSA 198 (406)
Q Consensus 121 i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~ 198 (406)
.-.+|.. .++|.-. ..++.|||++.. ..++.| ...|.-=.|-... .|+-.+ +..|.-|++..
T Consensus 72 AIMnP~~-~ViALra-g~~LQiFnletK-----------~klks~~~~e~VvfWkWis~~--~L~lVT-~taVyHWs~~~ 135 (365)
T 2xzh_A 72 AIMNPAS-KVIALKA-GKTLQIFNIEMK-----------SKMKAHTMTDDVTFWKWISLN--TVALVT-DNAVYHWSMEG 135 (365)
T ss_dssp EEECSSS-SEEEEEE-TTEEEEEETTTT-----------EEEEEEECSSCEEEEEECSSS--EEEEEE-SSEEEEEESST
T ss_pred eeeCCCc-cEEEEec-CCeEEEechHHh-----------hhhcceecCCccEEEEecCCC--eEEEEc-CCcEEEEcccC
Confidence 3457877 5777665 678999999983 223332 3567777787544 455553 36899999976
Q ss_pred ccCCceeeeeeeeecc----CccEEEEEeeCCCCCEEEEEe------cCCcEEEEECCCCcccccccccCCCeeEEEec-
Q 015484 199 LAQDKVIDAMHVYEAH----ESVVEDVSWHLKNENLFGSAG------DDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFN- 267 (406)
Q Consensus 199 ~~~~~~~~~~~~~~~~----~~~i~~i~~~p~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~- 267 (406)
... +...+..| ...|..-..+++..-++++|- -.|.+.+|..+.+. -+.+.+|...-..+...
T Consensus 136 ~s~-----P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g 209 (365)
T 2xzh_A 136 ESQ-----PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEG 209 (365)
T ss_dssp TCC-----CEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTT
T ss_pred CCC-----CceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceeeeeeeeeEEEecCC
Confidence 322 22333333 245666666763333333332 24678899877443 34555555444333332
Q ss_pred -CCCCcEEEEEeC---CCcEEEEeCCCC---CCCc-----EEecC---CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 015484 268 -PYNEWVLATASS---DTTVALFDMRKM---TVPL-----HILSS---HTEEVFQVEWDPNHETVLASSADDRRLMVWDL 332 (406)
Q Consensus 268 -~~~~~~l~~~~~---dg~i~vwd~~~~---~~~~-----~~~~~---h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~ 332 (406)
+....+++.+.. .+.+++.++... ..+. ..+.. ...-..++..++... ++..-+.-|.|.+||+
T Consensus 210 ~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kyg-viyviTK~G~ihlyDl 288 (365)
T 2xzh_A 210 NAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDL 288 (365)
T ss_dssp CSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTT-EEEEEETTSEEEEEET
T ss_pred CCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCC-EEEEEeCCcEEEEEEc
Confidence 111223333332 258999998543 1111 11111 234466788888775 7888999999999999
Q ss_pred CCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 333 NRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.+ ..+++..+-....|...+-+..... +++....|.|.--.+++.
T Consensus 289 eT--------------gt~i~~nrIS~d~iF~ta~~~~~~G-i~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 289 ET--------------GTCIYMNRISGETIFVTAPHEATAG-IIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp TT--------------CCEEEEEECCSSCEEEEEEEGGGTE-EEEEETTCEEEEEEECTT
T ss_pred cc--------------CcEEEEeccCCCceEEecccCCCCc-EEEEcCCCEEEEEEECcc
Confidence 98 4556665555566665555444332 445556776665555544
No 316
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.18 E-value=0.63 Score=41.27 Aligned_cols=105 Identities=13% Similarity=0.172 Sum_probs=60.3
Q ss_pred CCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCC---CCCEEEEEecC-----C
Q 015484 167 KEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLK---NENLFGSAGDD-----C 238 (406)
Q Consensus 167 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~---~~~~l~~~~~d-----g 238 (406)
..-.+++|.|+|. ++++ ...|.|.+++ .+.. ..+..+............|+|+|+ ++.++++-... +
T Consensus 31 ~~P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~-~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGG-MLIA-ERPGRIRLFR--EGRL-STYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSC-EEEE-ETTTEEEEEE--TTEE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCc-cEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 3457999999987 5554 5669999998 3221 111111111122356889999984 35566555433 5
Q ss_pred cEEEEECCCCcc-----c-cccc---ccCCCeeEEEecCCCCcEEEEE
Q 015484 239 QLMIWDLRTNQT-----Q-QRVK---AHEKEVNYLSFNPYNEWVLATA 277 (406)
Q Consensus 239 ~i~i~d~~~~~~-----~-~~~~---~~~~~v~~i~~~~~~~~~l~~~ 277 (406)
.|..++...... + ..+. ........++|.|+|. ++++.
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~ 152 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTT 152 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEEC
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEE
Confidence 688888764321 1 1122 1112346899999997 55553
No 317
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.18 E-value=0.61 Score=41.11 Aligned_cols=242 Identities=12% Similarity=0.075 Sum_probs=124.7
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCcee----eeCCCCCeeEEEecCC---CCCeEEEe
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLR----LKGHDKEGYGLSWSPF---KEGYLVSG 185 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~----~~~h~~~v~~l~~~~~---~~~~l~s~ 185 (406)
.--...+.|+|.|++ .++++-...|.|++++....... ++.. ..........|+++|+ +. .|...
T Consensus 29 ~gL~~P~~ia~~pdG-~llVter~~G~I~~v~~~~g~~~------~v~~~~~v~~~g~~GllGia~~Pdf~~~g-~lYv~ 100 (347)
T 3das_A 29 TGLNSPWGLAPLPGG-DLLVSSRDEATITRVDAKTGRKT------ELGEVPGVSPSGEGGLLGIALSPDYASDH-MVYAY 100 (347)
T ss_dssp CCCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEE------EEEECTTCCCBTTBSEEEEEECTTHHHHC-EEEEE
T ss_pred cCCCCceEEEEcCCC-cEEEEEecCCEEEEEECCCCcEe------eecccCceeecCCCCceeeEeccccccCC-EEEEE
Confidence 345678999999999 56666555899999976542211 1111 1123456789999985 33 44432
Q ss_pred ---cCCCeEEEEeCCCcc----CCceeee-eeeee-ccCccEEEEEeeCCCCCEEEEEec-------------CCcEEEE
Q 015484 186 ---SHDNKICLWDVSALA----QDKVIDA-MHVYE-AHESVVEDVSWHLKNENLFGSAGD-------------DCQLMIW 243 (406)
Q Consensus 186 ---~~dg~i~iwd~~~~~----~~~~~~~-~~~~~-~~~~~i~~i~~~p~~~~~l~~~~~-------------dg~i~i~ 243 (406)
..++.|.-|.+.... .....+. +..+. ........|+|.| ++.++++.+. .|.|.-.
T Consensus 101 yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi 179 (347)
T 3das_A 101 FTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRM 179 (347)
T ss_dssp EECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEE
T ss_pred EecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEE
Confidence 245567667665421 1001111 11111 1122346789999 5677777542 3455555
Q ss_pred ECCCCc-------ccccc-cccCCCeeEEEecCCCCcEEEEE-eCCCcEEEEeCCCC-----------------CCCcEE
Q 015484 244 DLRTNQ-------TQQRV-KAHEKEVNYLSFNPYNEWVLATA-SSDTTVALFDMRKM-----------------TVPLHI 297 (406)
Q Consensus 244 d~~~~~-------~~~~~-~~~~~~v~~i~~~~~~~~~l~~~-~~dg~i~vwd~~~~-----------------~~~~~~ 297 (406)
+....- ....+ .++. ....++|+|++. ++++- +.++.=.|--+..+ ..|+..
T Consensus 180 ~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~-L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~ 257 (347)
T 3das_A 180 TPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQR-LFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQ 257 (347)
T ss_dssp CTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCC-EEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEE
T ss_pred eCCCCccCCCCCCCCeEEeeCCC-CcceEEECCCCC-EEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEe
Confidence 554220 00111 2332 346799999877 44432 22332222222211 123444
Q ss_pred ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEE
Q 015484 298 LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISS 377 (406)
Q Consensus 298 ~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s 377 (406)
+..+......++|.. + .++...-..+.|....+...+. . .+....+.+....+.+|+..|+|. ++++
T Consensus 258 ~~~~~~ap~G~~~~~-g-~~~~~~l~~~~l~~v~~~~~~~-~---------~~~e~~l~~~~gR~~dv~~~pDG~-lyv~ 324 (347)
T 3das_A 258 WSTDEASPSGIAYAE-G-SVWMAGLRGERLWRIPLKGTAA-A---------ADPQAFLEGEYGRLRTVAPAGGDK-LWLV 324 (347)
T ss_dssp ECTTTCCEEEEEEET-T-EEEEEESTTCSEEEEEEETTEE-S---------SCCEEESTTTSSCEEEEEEEETTE-EEEE
T ss_pred cCCCCCCCcceEEEc-C-ceeeccccCCEEEEEEecCCce-e---------cceEEeecCCCCCccEEEECCCCc-EEEE
Confidence 443334667888874 4 3565555556665555543110 0 011122233446799999999998 4444
Q ss_pred E
Q 015484 378 V 378 (406)
Q Consensus 378 ~ 378 (406)
.
T Consensus 325 t 325 (347)
T 3das_A 325 T 325 (347)
T ss_dssp E
T ss_pred E
Confidence 3
No 318
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.17 E-value=0.6 Score=48.82 Aligned_cols=229 Identities=10% Similarity=0.178 Sum_probs=129.9
Q ss_pred CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCcc
Q 015484 138 CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESV 217 (406)
Q Consensus 138 g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 217 (406)
..|.|.|+.+.... ... .-..-+.-.+|..+ .|+-= ...++.|||+++....+.. . ....
T Consensus 48 ~~vvIidl~~~~~~-------~rr----pi~AdsAIMnP~~~-iiALr-ag~~lQiFnl~~k~klks~------~-~~e~ 107 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNP-------IRR----PISADSAIMNPASK-VIALK-AGKTLQIFNIEMKSKMKAH------T-MTDD 107 (1630)
T ss_pred ceEEEEECCCCCCc-------ccc----cccchhhccCCCcc-eEEEe-cCCeEEEeehHHhhhhccc------c-cCCC
Confidence 37888888874321 111 11112333566554 44444 3678999999875432221 1 2345
Q ss_pred EEEEEeeCCCCCEEEEEecCCcEEEEECCCC-ccccccccc----CCCeeEEEecCCCCcEEEEEe------CCCcEEEE
Q 015484 218 VEDVSWHLKNENLFGSAGDDCQLMIWDLRTN-QTQQRVKAH----EKEVNYLSFNPYNEWVLATAS------SDTTVALF 286 (406)
Q Consensus 218 i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~----~~~v~~i~~~~~~~~~l~~~~------~dg~i~vw 286 (406)
|.--.|- +.+.++-.+. ..|..|++... .+++.+..| ...|..-..+++.++++++|- -.|.+.+|
T Consensus 108 VvfWkWi--s~~~l~lVT~-~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLy 184 (1630)
T 1xi4_A 108 VTFWKWI--SLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY 184 (1630)
T ss_pred ceEEEec--CCCeeEEEcC-CeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeee
Confidence 6666676 4666655553 57999999743 334444333 456777788899997777765 34788899
Q ss_pred eCCCCCCCcEEecCCCCCeEEEEEc--CCCCCEEEEEeC---CCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCC
Q 015484 287 DMRKMTVPLHILSSHTEEVFQVEWD--PNHETVLASSAD---DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAK 361 (406)
Q Consensus 287 d~~~~~~~~~~~~~h~~~v~~i~~~--p~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 361 (406)
...... -+.+.+|.+.-..+... +....+++.+.. .+.+.|-++.........+ ......+.+......+-
T Consensus 185 S~er~~--sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f--~kk~~~~~~~~~~~~Df 260 (1630)
T 1xi4_A 185 SVDRKV--SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF--PKKAVDVFFPPEAQNDF 260 (1630)
T ss_pred eccccc--chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCC--ccccccccCCcccccCc
Confidence 887533 34566666554444432 222223433322 3789999886531100000 00011111111222344
Q ss_pred eeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 362 ISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 362 v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
...+..++... ++...+.-|.|+++|+.++..
T Consensus 261 pv~~~vs~k~g-~iy~itk~G~~~~~d~~t~~~ 292 (1630)
T 1xi4_A 261 PVAMQISEKHD-VVFLITKYGYIHLYDLETGTC 292 (1630)
T ss_pred ceEEEeccccC-EEEEEecCceEEEEecccchh
Confidence 55677777666 677778889999999999864
No 319
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.16 E-value=0.41 Score=38.98 Aligned_cols=136 Identities=13% Similarity=0.078 Sum_probs=76.6
Q ss_pred eEEEecCCCeEEEEeCCCccCCceeeeeeeeecc--CccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccC
Q 015484 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAH--ESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHE 258 (406)
Q Consensus 181 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 258 (406)
.|+...+| +++.=.........-+...... +. =..+.+++|+| ++.+.++ .+|.+.-.+..+.....-+. ..
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~-s~ 79 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMG-RA 79 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHH-HC
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccc-cc
Confidence 67777777 6555444443321111111111 12 13677999999 7777766 77887777765433211111 12
Q ss_pred CC--------eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCC-c----EEe-cCCCCCeEEEEEcCCCCCEEEEEeCC
Q 015484 259 KE--------VNYLSFNPYNEWVLATASSDTTVALFDMRKMTVP-L----HIL-SSHTEEVFQVEWDPNHETVLASSADD 324 (406)
Q Consensus 259 ~~--------v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~----~~~-~~h~~~v~~i~~~p~~~~~l~s~~~d 324 (406)
.. -.++.|.|+|. +.++ .||.|+-++..+.... . ..+ ..-=..+..|.+.|+|. |.+.. |
T Consensus 80 t~IG~~Gw~~F~a~~fD~~G~-LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~--Lyav~-d 153 (236)
T 1tl2_A 80 KKIGNGGWNQFQFLFFDPNGY-LYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY--LYAVH-G 153 (236)
T ss_dssp EEEECSCGGGCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC--EEEEE-T
T ss_pred cEecccccccceEEEECCCCC-EEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce--EEEEe-C
Confidence 22 37889999998 5555 5698988875432211 0 011 11113679999999995 55555 8
Q ss_pred CcEE
Q 015484 325 RRLM 328 (406)
Q Consensus 325 g~i~ 328 (406)
+.+.
T Consensus 154 g~ly 157 (236)
T 1tl2_A 154 QQFY 157 (236)
T ss_dssp TEEE
T ss_pred CcEE
Confidence 8854
No 320
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.04 E-value=0.31 Score=41.97 Aligned_cols=187 Identities=10% Similarity=0.051 Sum_probs=88.7
Q ss_pred cEEEEEeCC-----CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC-----CeEEEEeCCC
Q 015484 129 NLVGTKTSS-----CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD-----NKICLWDVSA 198 (406)
Q Consensus 129 ~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-----g~i~iwd~~~ 198 (406)
.+++.|+.+ ..+.+||..+.... .+.....+........++.. ++. +++.|+.+ ..+.+||+.+
T Consensus 64 ~l~v~GG~~~~~~~~~~~~~d~~~~~~~---~W~~~~~~p~~r~~~~~~~~--~~~-lyv~GG~~~~~~~~~~~~~d~~~ 137 (301)
T 2vpj_A 64 RIYVIGGYDGRSRLSSVECLDYTADEDG---VWYSVAPMNVRRGLAGATTL--GDM-IYVSGGFDGSRRHTSMERYDPNI 137 (301)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTCCTTC---CCEEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCEEEEEETTT
T ss_pred EEEEEcCCCCCccCceEEEEECCCCCCC---eeEECCCCCCCccceeEEEE--CCE-EEEEcccCCCcccceEEEEcCCC
Confidence 567777754 46889998774300 01111111111111112222 344 67777654 3588888876
Q ss_pred ccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC-----CcEEEEECCCCcccc--cccccCCCeeEEEecCCCC
Q 015484 199 LAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD-----CQLMIWDLRTNQTQQ--RVKAHEKEVNYLSFNPYNE 271 (406)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~~~~--~~~~~~~~v~~i~~~~~~~ 271 (406)
.. ...+.......... +++.. ++.+++.|+.+ ..+.+||+.+.+-.. .+.........+.+ ++.
T Consensus 138 ~~----W~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~ 208 (301)
T 2vpj_A 138 DQ----WSMLGDMQTAREGA-GLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDH 208 (301)
T ss_dssp TE----EEEEEECSSCCBSC-EEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE
T ss_pred Ce----EEECCCCCCCcccc-eEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCE
Confidence 43 22222111111111 22222 56777777754 458899988764322 12111111222222 344
Q ss_pred cEEEEEeCC-----CcEEEEeCCCCCC-CcEEecCCCCCeEEEEEcCCCCCEEEEEeCC-----CcEEEEeCCC
Q 015484 272 WVLATASSD-----TTVALFDMRKMTV-PLHILSSHTEEVFQVEWDPNHETVLASSADD-----RRLMVWDLNR 334 (406)
Q Consensus 272 ~~l~~~~~d-----g~i~vwd~~~~~~-~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d-----g~i~iwd~~~ 334 (406)
+++.|+.+ ..+.+||+.+..- .+..+.........+.+ ++ .+++.|+.+ ..+.+||+..
T Consensus 209 -i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 209 -IYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RG-RLYAIAGYDGNSLLSSIECYDPII 278 (301)
T ss_dssp -EEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBEEEEEEEETTT
T ss_pred -EEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CC-EEEEEcCcCCCcccccEEEEcCCC
Confidence 77777754 4689999886431 01111111111222222 34 366677654 3467777765
No 321
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.98 E-value=0.79 Score=40.65 Aligned_cols=147 Identities=12% Similarity=0.112 Sum_probs=79.0
Q ss_pred CCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCC---CCCEEEEEec---C---
Q 015484 167 KEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLK---NENLFGSAGD---D--- 237 (406)
Q Consensus 167 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~---~~~~l~~~~~---d--- 237 (406)
....+++|.|++. ++ .+..+|.|.+++. .+. ..+..+............|+++|+ ++.++++-+. +
T Consensus 29 ~~P~~ia~~pdG~-l~-V~e~~g~I~~~d~-~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YL-VTERPGRLVLISP-SGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp SCEEEEEEEETTE-EE-EEETTTEEEEECS-SCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCeEEEEcCCCe-EE-EEeCCCEEEEEeC-CCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 3457999999886 44 4556699999873 332 111111111122356889999985 4566555442 3
Q ss_pred -CcEEEEECCCCc--c-----c-cccc-ccCCCeeEEEecCCCCcEEEEEeC-------------CCcEEEEeCCCCC--
Q 015484 238 -CQLMIWDLRTNQ--T-----Q-QRVK-AHEKEVNYLSFNPYNEWVLATASS-------------DTTVALFDMRKMT-- 292 (406)
Q Consensus 238 -g~i~i~d~~~~~--~-----~-~~~~-~~~~~v~~i~~~~~~~~~l~~~~~-------------dg~i~vwd~~~~~-- 292 (406)
..|..|+..... . + ..+. ........|+|.|+|. ++++.+. .|.|.-++....-
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~ 182 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPA 182 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCT
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCC
Confidence 567777765431 1 1 1121 1122346799999998 5554332 2456666654310
Q ss_pred -----CCcEEecCCCCCeEEEEEcC-CCCCEEEEE
Q 015484 293 -----VPLHILSSHTEEVFQVEWDP-NHETVLASS 321 (406)
Q Consensus 293 -----~~~~~~~~h~~~v~~i~~~p-~~~~~l~s~ 321 (406)
.......++ .....++|+| ++. ++++-
T Consensus 183 ~npf~~~~i~a~G~-rnp~Gla~d~~~g~-l~v~d 215 (354)
T 3a9g_A 183 DNPFPNSPIWSYGH-RNPQGIDWHRASGV-MVATE 215 (354)
T ss_dssp TSSSTTCCEEEECC-SCCCEEEECTTTCC-EEEEE
T ss_pred CCCCCCCcEEEEcc-CCcceEEEeCCCCC-EEEEe
Confidence 001112233 2356899999 554 45443
No 322
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.95 E-value=0.91 Score=41.11 Aligned_cols=234 Identities=11% Similarity=0.181 Sum_probs=139.0
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCC--CCCeeEEEecCCCCCeEEEecCCCeEEEEeCC
Q 015484 120 RARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGH--DKEGYGLSWSPFKEGYLVSGSHDNKICLWDVS 197 (406)
Q Consensus 120 ~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~ 197 (406)
+.-.+|.. .++|.-. ..++.|||++.. ..++.| ...|.-=.|-... .|+-.+ +..|.-|++.
T Consensus 70 sAIMnP~~-~iiALra-g~~lQiFnle~K-----------~klks~~~~e~VvfWkWis~~--~l~lVT-~taVyHWsi~ 133 (494)
T 1bpo_A 70 SAIMNPAS-KVIALKA-GKTLQIFNIEMK-----------SKMKAHTMTDDVTFWKWISLN--TVALVT-DNAVYHWSME 133 (494)
T ss_dssp EEEECSSS-SCEEEEE-TTEEEEEETTTT-----------EEEEEEECSSCCCEEEEEETT--EEEEEC-SSEEEEEESS
T ss_pred eeeeCCCC-cEEEEec-CCeEEEEchHHh-----------hhhcceecCCCceEEEecCCC--eEEEEc-CCeeEEeccc
Confidence 34567777 5676665 678999999983 223333 3567677776544 455553 4689999997
Q ss_pred CccCCceeeeeeeeecc----CccEEEEEeeCCCCCEEE-EEe------cCCcEEEEECCCCcccccccccCCCeeEEEe
Q 015484 198 ALAQDKVIDAMHVYEAH----ESVVEDVSWHLKNENLFG-SAG------DDCQLMIWDLRTNQTQQRVKAHEKEVNYLSF 266 (406)
Q Consensus 198 ~~~~~~~~~~~~~~~~~----~~~i~~i~~~p~~~~~l~-~~~------~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~ 266 (406)
.... +...+..| ...|..-..+++ .+.++ +|- -.|.+.+|..+.+. -+.+.+|......+..
T Consensus 134 ~~s~-----P~kvFdR~~~L~~~QIInY~~d~~-~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~ 206 (494)
T 1bpo_A 134 GESQ-----PVKMFDRHSSLAGCQIINYRTDAK-QKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKM 206 (494)
T ss_dssp SSCC-----CEEEEECCGGGTTCEEEEEEECTT-SSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEEC
T ss_pred CCCC-----chhheecchhcccceEEEEEECCC-CCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEec
Confidence 6322 22333333 345666666763 44443 332 24678899977543 4555666555544444
Q ss_pred cCC--CCcEEEEEeCC---CcEEEEeCCCC---CCCc-----EEec---CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEE
Q 015484 267 NPY--NEWVLATASSD---TTVALFDMRKM---TVPL-----HILS---SHTEEVFQVEWDPNHETVLASSADDRRLMVW 330 (406)
Q Consensus 267 ~~~--~~~~l~~~~~d---g~i~vwd~~~~---~~~~-----~~~~---~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iw 330 (406)
.-+ ...+++.+... +.++|.++... ..+. ..+. ....-..++..++... ++..-+.-|.|.+|
T Consensus 207 ~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg-viyviTK~G~i~ly 285 (494)
T 1bpo_A 207 EGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLY 285 (494)
T ss_dssp TTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT-EEEEEETTSEEEEE
T ss_pred CCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC-EEEEEecCceEEEE
Confidence 311 12244444442 68999998653 1111 1111 1234467788888876 78889999999999
Q ss_pred eCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 331 DLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 331 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
|+.+ ..+++..+-....|...+-+..... +++....|.|.--.+++.
T Consensus 286 DleT--------------gt~i~~nrIs~~~iF~t~~~~~~~G-i~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 286 DLET--------------GTCIYMNRISGETIFVTAPHEATAG-IIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp ETTT--------------CCEEEEEECCSSCEEEEEEETTTTE-EEEEETTCEEEEEEECTT
T ss_pred eccc--------------ceeeeeecccCCceEEecccCCCCc-EEEEccCceEEEEEEccc
Confidence 9998 4556665555566665555544443 445557777666555544
No 323
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.89 E-value=0.32 Score=42.00 Aligned_cols=184 Identities=9% Similarity=0.018 Sum_probs=89.2
Q ss_pred cEEEEEeCC----CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC------CeEEEEeCCC
Q 015484 129 NLVGTKTSS----CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD------NKICLWDVSA 198 (406)
Q Consensus 129 ~~l~~~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d------g~i~iwd~~~ 198 (406)
.+++.|+.+ ..+.+||..+..-. ....+........++.+ ++. +++.|+.+ ..+.+||+.+
T Consensus 57 ~lyv~GG~~~~~~~~~~~~d~~~~~W~------~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~d~~~ 127 (306)
T 3ii7_A 57 VVYILGGSQLFPIKRMDCYNVVKDSWY------SKLGPPTPRDSLAACAA--EGK-IYTSGGSEVGNSALYLFECYDTRT 127 (306)
T ss_dssp EEEEECCBSSSBCCEEEEEETTTTEEE------EEECCSSCCBSCEEEEE--TTE-EEEECCBBTTBSCCCCEEEEETTT
T ss_pred EEEEEeCCCCCCcceEEEEeCCCCeEE------ECCCCCccccceeEEEE--CCE-EEEECCCCCCCcEeeeEEEEeCCC
Confidence 577777754 57888998774321 11111111111112222 344 67777765 4588889877
Q ss_pred ccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec---------CCcEEEEECCCCccc--ccccccCCCeeEEEec
Q 015484 199 LAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD---------DCQLMIWDLRTNQTQ--QRVKAHEKEVNYLSFN 267 (406)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~---------dg~i~i~d~~~~~~~--~~~~~~~~~v~~i~~~ 267 (406)
..- ..+........... ++.. ++.+++.|+. -..+.+||+.+.+-. ..+......-..+.+
T Consensus 128 ~~W----~~~~~~p~~r~~~~-~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~- 199 (306)
T 3ii7_A 128 ESW----HTKPSMLTQRCSHG-MVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV- 199 (306)
T ss_dssp TEE----EEECCCSSCCBSCE-EEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-
T ss_pred Cce----EeCCCCcCCcceeE-EEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-
Confidence 431 11111111111111 2222 4677777764 345889999876432 112111111122222
Q ss_pred CCCCcEEEEEeCC-----CcEEEEeCCCCCC-CcEEecCCCCCeEEEEEcCCCCCEEEEEeCC-----CcEEEEeCCC
Q 015484 268 PYNEWVLATASSD-----TTVALFDMRKMTV-PLHILSSHTEEVFQVEWDPNHETVLASSADD-----RRLMVWDLNR 334 (406)
Q Consensus 268 ~~~~~~l~~~~~d-----g~i~vwd~~~~~~-~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d-----g~i~iwd~~~ 334 (406)
++. +++.|+.+ ..+.+||+.+..- .+..+.........+.+ ++ .+++.|+.+ ..+.+||+..
T Consensus 200 -~~~-i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~~~~yd~~~ 272 (306)
T 3ii7_A 200 -KDK-IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GS-IVYVLAGFQGVGRLGHILEYNTET 272 (306)
T ss_dssp -TTE-EEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TT-EEEEEECBCSSSBCCEEEEEETTT
T ss_pred -CCE-EEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CC-EEEEEeCcCCCeeeeeEEEEcCCC
Confidence 344 77777653 3688999876421 01111111122233333 33 477777754 4577888765
No 324
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.89 E-value=0.18 Score=43.58 Aligned_cols=184 Identities=11% Similarity=0.079 Sum_probs=87.0
Q ss_pred cEEEEEeCC-----CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC-----eEEEEeCCC
Q 015484 129 NLVGTKTSS-----CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN-----KICLWDVSA 198 (406)
Q Consensus 129 ~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-----~i~iwd~~~ 198 (406)
.+++.|+.+ ..+.+||..+..-.. ...+........++.+ ++. +++.|+.++ .+.+||+.+
T Consensus 63 ~lyv~GG~~~~~~~~~~~~~d~~~~~W~~------~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~d~~~ 133 (302)
T 2xn4_A 63 LVFAVGGFNGSLRVRTVDSYDPVKDQWTS------VANMRDRRSTLGAAVL--NGL-LYAVGGFDGSTGLSSVEAYNIKS 133 (302)
T ss_dssp EEEEESCBCSSSBCCCEEEEETTTTEEEE------ECCCSSCCBSCEEEEE--TTE-EEEEEEECSSCEEEEEEEEETTT
T ss_pred EEEEEeCcCCCccccceEEECCCCCceee------CCCCCccccceEEEEE--CCE-EEEEcCCCCCccCceEEEEeCCC
Confidence 577777754 358888887643211 1111111111112222 344 667776553 477888776
Q ss_pred ccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC-------CcEEEEECCCCcccc--cccccCCCeeEEEecCC
Q 015484 199 LAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD-------CQLMIWDLRTNQTQQ--RVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-------g~i~i~d~~~~~~~~--~~~~~~~~v~~i~~~~~ 269 (406)
.. ...+.......... +++.. ++.+++.|+.+ ..+.+||+.+.+-.. .+.........+.+ +
T Consensus 134 ~~----W~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~ 204 (302)
T 2xn4_A 134 NE----WFHVAPMNTRRSSV-GVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--N 204 (302)
T ss_dssp TE----EEEECCCSSCCBSC-EEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T
T ss_pred Ce----EeecCCCCCcccCc-eEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--C
Confidence 43 21111111111111 22222 46777777643 358899988764321 22211112222222 3
Q ss_pred CCcEEEEEeCC-----CcEEEEeCCCCCC-CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC-----cEEEEeCCC
Q 015484 270 NEWVLATASSD-----TTVALFDMRKMTV-PLHILSSHTEEVFQVEWDPNHETVLASSADDR-----RLMVWDLNR 334 (406)
Q Consensus 270 ~~~~l~~~~~d-----g~i~vwd~~~~~~-~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg-----~i~iwd~~~ 334 (406)
+. +++.|+.+ ..+.+||+.+..- .+..+.........+.+ ++ .+++.|+.++ .+.+||+.+
T Consensus 205 ~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~ 276 (302)
T 2xn4_A 205 NL-LYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NG-LLYVVGGDDGSCNLASVEYYNPTT 276 (302)
T ss_dssp TE-EEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTT
T ss_pred CE-EEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CC-EEEEECCcCCCcccccEEEEcCCC
Confidence 44 77777654 3688999876431 01111111111122222 34 3677776553 478888765
No 325
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.84 E-value=2.1 Score=44.89 Aligned_cols=192 Identities=11% Similarity=0.222 Sum_probs=106.9
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCC--CCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCc
Q 015484 122 RCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGH--DKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSAL 199 (406)
Q Consensus 122 ~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~ 199 (406)
-.+|.. .++|.-. ..++.|||+.... .++.| ..+|.-=.|-... .|+-.+ +..|.-|++...
T Consensus 72 IMnP~~-~iiALra-g~~lQiFnl~~k~-----------klks~~~~e~VvfWkWis~~--~l~lVT-~~aVyHW~~~~~ 135 (1630)
T 1xi4_A 72 IMNPAS-KVIALKA-GKTLQIFNIEMKS-----------KMKAHTMTDDVTFWKWISLN--TVALVT-DNAVYHWSMEGE 135 (1630)
T ss_pred ccCCCc-ceEEEec-CCeEEEeehHHhh-----------hhcccccCCCceEEEecCCC--eeEEEc-CCeEEEeccCCC
Confidence 456766 4666554 6789999998732 22233 3467666776544 354443 467999999652
Q ss_pred cCCceeeeeeeeecc----CccEEEEEeeCCCCCEEEEEe------cCCcEEEEECCCCcccccccccCCCeeEEEec--
Q 015484 200 AQDKVIDAMHVYEAH----ESVVEDVSWHLKNENLFGSAG------DDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFN-- 267 (406)
Q Consensus 200 ~~~~~~~~~~~~~~~----~~~i~~i~~~p~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~-- 267 (406)
.. |...+..| ...|..-..+++..-++++|- -.|.+.+|..+.+. .+.+.+|......+...
T Consensus 136 s~-----P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~ 209 (1630)
T 1xi4_A 136 SQ-----PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGN 209 (1630)
T ss_pred Cc-----cHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCC
Confidence 21 12222222 345656666663333333332 35788899887543 34445554443333321
Q ss_pred CCCCcEEEEEeC---CCcEEEEeCCCC---CCC-----cEEecC---CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 015484 268 PYNEWVLATASS---DTTVALFDMRKM---TVP-----LHILSS---HTEEVFQVEWDPNHETVLASSADDRRLMVWDLN 333 (406)
Q Consensus 268 ~~~~~~l~~~~~---dg~i~vwd~~~~---~~~-----~~~~~~---h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~ 333 (406)
+....+++.+.. .+.++|.++... ..+ +..+.. ...-..++..++... ++..-+.-|.|.+||+.
T Consensus 210 ~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g-~iy~itk~G~~~~~d~~ 288 (1630)
T 1xi4_A 210 AEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLE 288 (1630)
T ss_pred CCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccC-EEEEEecCceEEEEecc
Confidence 111213332222 268999988553 111 111111 123345677777765 68888899999999999
Q ss_pred CCC
Q 015484 334 RIG 336 (406)
Q Consensus 334 ~~~ 336 (406)
++.
T Consensus 289 t~~ 291 (1630)
T 1xi4_A 289 TGT 291 (1630)
T ss_pred cch
Confidence 843
No 326
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.80 E-value=2.2 Score=44.35 Aligned_cols=199 Identities=12% Similarity=0.095 Sum_probs=99.8
Q ss_pred eEEEEEeecCCceeEEEEcCCC-----CcEEEEEeC-CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecC-CC
Q 015484 106 VEIAQKIRVDGEVNRARCMPQK-----PNLVGTKTS-SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSP-FK 178 (406)
Q Consensus 106 ~~~~~~~~h~~~v~~i~~~p~~-----~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~ 178 (406)
+.........++|.|+++.|.. ..++|+|.. |++|+|+++....... ...+.. .....++.+.. .+
T Consensus 544 L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~------~~~L~~-~~~p~si~l~~~~~ 616 (1158)
T 3ei3_A 544 LRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLH------KEMLGG-EIIPRSILMTTFES 616 (1158)
T ss_dssp EEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEE------EEECCS-SCCEEEEEEEEETT
T ss_pred eeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEE------EEECCC-CCCCcEEEEEEeCC
Confidence 4445555667899999998642 368899986 9999999998632110 111211 12333443322 13
Q ss_pred CCeEEEecCCCeEEEEeCCCccCCceeeee-eeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccccc
Q 015484 179 EGYLVSGSHDNKICLWDVSALAQDKVIDAM-HVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAH 257 (406)
Q Consensus 179 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 257 (406)
..+|..|-.||.+..+.++.... .+... ..+-+ ..++.=..+...+..-+++++ +....+|.-+ ++.... ...
T Consensus 617 ~~~L~igl~dG~l~~~~~d~~tg--~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s-~l~ 690 (1158)
T 3ei3_A 617 SHYLLCALGDGALFYFGLNIETG--LLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFS-NVN 690 (1158)
T ss_dssp EEEEEEEETTSEEEEEEECTTTC--CEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEE-EBS
T ss_pred CcEEEEEeCCCeEEEEEEcCCCC--ccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEe-ccC
Confidence 33889999999987776653211 11111 11222 234433333332333333333 3444444433 221111 111
Q ss_pred CCCeeEE-EecCCC-CcEEEEEeCCCcEEEEeCCCCCC-CcEEecCCCCCeEEEEEcCCCCCEEE
Q 015484 258 EKEVNYL-SFNPYN-EWVLATASSDTTVALFDMRKMTV-PLHILSSHTEEVFQVEWDPNHETVLA 319 (406)
Q Consensus 258 ~~~v~~i-~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~i~~~p~~~~~l~ 319 (406)
...+..+ .|+... +.-++..+ ++.++|.-+..... ++..+.- ...+..++++|..+.+.+
T Consensus 691 ~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL-~~Tprri~y~~~~~~~~v 753 (1158)
T 3ei3_A 691 LKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPL-YESPRKICYQEVSQCFGV 753 (1158)
T ss_dssp SSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEEC-SSEEEEEEEEGGGTEEEE
T ss_pred hHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeC-CCCceEEEEcCCCCEEEE
Confidence 2233333 343321 22344333 45699888755332 2233332 467899999998874333
No 327
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.70 E-value=0.93 Score=39.36 Aligned_cols=202 Identities=13% Similarity=0.139 Sum_probs=118.2
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCC----CCeeEEEecCCCCCeEEEec--
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHD----KEGYGLSWSPFKEGYLVSGS-- 186 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~----~~v~~l~~~~~~~~~l~s~~-- 186 (406)
....+|.-=+|-... .|+..+. ..|+-|++.. ...|...+..|. ..|..-..+++.+-++++|-
T Consensus 104 ~~~e~VvfWkWis~~--~L~lVT~-taVyHWs~~~-------~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~ 173 (365)
T 2xzh_A 104 TMTDDVTFWKWISLN--TVALVTD-NAVYHWSMEG-------ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISA 173 (365)
T ss_dssp ECSSCEEEEEECSSS--EEEEEES-SEEEEEESST-------TCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEE
T ss_pred ecCCccEEEEecCCC--eEEEEcC-CcEEEEcccC-------CCCCceeeecchhcccceEEEEEECCCCCEEEEEeEec
Confidence 344566666666554 4555543 4599999976 245566666554 45666677777773444442
Q ss_pred ----CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEee--CCCCCEEEEEec---CCcEEEEECCCC-cccccc--
Q 015484 187 ----HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWH--LKNENLFGSAGD---DCQLMIWDLRTN-QTQQRV-- 254 (406)
Q Consensus 187 ----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~--p~~~~~l~~~~~---dg~i~i~d~~~~-~~~~~~-- 254 (406)
-.|.+.+|..+.... +.+.+|.+....+... +....+|+-+.. .+.+++.++... .....+
T Consensus 174 ~~~~v~G~mQLYS~er~~s-------Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~k 246 (365)
T 2xzh_A 174 QQNRVVGAMQLYSVDRKVS-------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK 246 (365)
T ss_dssp ETTEEEEEEEEEETTTTEE-------EEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCC
T ss_pred cCCccceeEEEEeeccccc-------ceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCccc
Confidence 247788999887432 4455665544444332 111234433332 268999998543 111111
Q ss_pred ---------cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 015484 255 ---------KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDR 325 (406)
Q Consensus 255 ---------~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg 325 (406)
....+---++..++... ++..-+.-|.|++||+.++.. +..-.-....|...+-+..... ++.....|
T Consensus 247 k~vdi~fppea~~DFPVamqvs~kyg-viyviTK~G~ihlyDleTgt~-i~~nrIS~d~iF~ta~~~~~~G-i~~Vnr~G 323 (365)
T 2xzh_A 247 KAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTC-IYMNRISGETIFVTAPHEATAG-IIGVNRKG 323 (365)
T ss_dssp EEEEECCCTTCTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEEEGGGTE-EEEEETTC
T ss_pred ccceeeCCccccCCceEEEEecccCC-EEEEEeCCcEEEEEEcccCcE-EEEeccCCCceEEecccCCCCc-EEEEcCCC
Confidence 11234445677777777 788888999999999999776 5555555556655554444333 44555677
Q ss_pred cEEEEeCCC
Q 015484 326 RLMVWDLNR 334 (406)
Q Consensus 326 ~i~iwd~~~ 334 (406)
.|.--.++.
T Consensus 324 qVl~v~v~~ 332 (365)
T 2xzh_A 324 QVLSVCVEE 332 (365)
T ss_dssp EEEEEEECT
T ss_pred EEEEEEECc
Confidence 666555543
No 328
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.69 E-value=1.2 Score=41.00 Aligned_cols=109 Identities=10% Similarity=0.139 Sum_probs=59.8
Q ss_pred CCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeee-eee--ccCccEEEEEeeCC---CCCEEEEEec----
Q 015484 167 KEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMH-VYE--AHESVVEDVSWHLK---NENLFGSAGD---- 236 (406)
Q Consensus 167 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~--~~~~~i~~i~~~p~---~~~~l~~~~~---- 236 (406)
....+|+|.|+|+ ++++-...+.|.+++...+.. ..+..+. .+. .....+..|+|+|+ ++.++++-+.
T Consensus 27 ~~P~~~a~~pdG~-l~V~e~~gg~I~~~~~~~g~~-~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPDNQ-IWLTERATGKILRVNPESGSV-KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCE-EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCCCc-EEEEEcCCCEEEEEECCCCcE-eEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 4567999999987 666654445788887654322 1111110 010 12456789999985 5556555442
Q ss_pred --------CCcEEEEECCCCc-------ccc-ccc-ccCCCeeEEEecCCCCcEEEEE
Q 015484 237 --------DCQLMIWDLRTNQ-------TQQ-RVK-AHEKEVNYLSFNPYNEWVLATA 277 (406)
Q Consensus 237 --------dg~i~i~d~~~~~-------~~~-~~~-~~~~~v~~i~~~~~~~~~l~~~ 277 (406)
...|.-++..... .+. .+. ........|+|.|+|..++++|
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 2345555543221 111 111 1234578899999998444444
No 329
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.59 E-value=0.75 Score=37.47 Aligned_cols=153 Identities=10% Similarity=0.056 Sum_probs=77.6
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCC-CCceeeeCCC-CCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDC-DPDLRLKGHD-KEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
..+..++|+|++ .+.++ .+|.++-.+..+.... .+ .....+-... ..-.++.|.++|. +.++ .||.|.-
T Consensus 41 ~~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~~---~W~~s~t~IG~~Gw~~F~a~~fD~~G~-LYav--~dG~iyr 111 (236)
T 1tl2_A 41 SNFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDND---NWMGRAKKIGNGGWNQFQFLFFDPNGY-LYAV--SKDKLYK 111 (236)
T ss_dssp TTCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTC---CHHHHCEEEECSCGGGCSEEEECTTSC-EEEE--ETTEEEE
T ss_pred ccceeEEECCCc-cEEEE--eCCeEEEECCCCCCcc---cccccccEecccccccceEEEECCCCC-EEEe--CCCEEEE
Confidence 478899999988 55665 6776555554331100 00 0001111000 1136888998886 4444 5699887
Q ss_pred EeCCCccCCceeeeeeeeec-cCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccc------cc-cccCCCeeEEE
Q 015484 194 WDVSALAQDKVIDAMHVYEA-HESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ------RV-KAHEKEVNYLS 265 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~------~~-~~~~~~v~~i~ 265 (406)
++-.+.....-+..-..+.. -=..+..|.|.| ++.+.++. |+.+.-....+..... .+ ...-...+-+.
T Consensus 112 ~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~ 188 (236)
T 1tl2_A 112 ASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLF 188 (236)
T ss_dssp ESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEE
T ss_pred eCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEE
Confidence 77543322211111111111 114678999999 67777555 7776543333222111 11 11222344566
Q ss_pred ecCCCCcEEEEEeCCCcE
Q 015484 266 FNPYNEWVLATASSDTTV 283 (406)
Q Consensus 266 ~~~~~~~~l~~~~~dg~i 283 (406)
|.|++. +.++. +|.+
T Consensus 189 f~~~G~-l~~v~--~g~~ 203 (236)
T 1tl2_A 189 FSSVGT-LFGVQ--GGKF 203 (236)
T ss_dssp ECTTSC-EEEEE--TTEE
T ss_pred ECCCCc-EEEEe--CCeE
Confidence 888887 44444 6643
No 330
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.23 E-value=1.7 Score=39.37 Aligned_cols=201 Identities=13% Similarity=0.135 Sum_probs=121.4
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCC----CCeeEEEecCCCCCeEEEec---
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHD----KEGYGLSWSPFKEGYLVSGS--- 186 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~----~~v~~l~~~~~~~~~l~s~~--- 186 (406)
...+|.-=+|-... .|+..+ +..|+-|++.. ...|...+..|. ..|..-..+++.+-++++|-
T Consensus 104 ~~e~VvfWkWis~~--~l~lVT-~taVyHWsi~~-------~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~ 173 (494)
T 1bpo_A 104 MTDDVTFWKWISLN--TVALVT-DNAVYHWSMEG-------ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQ 173 (494)
T ss_dssp CSSCCCEEEEEETT--EEEEEC-SSEEEEEESSS-------SCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEE
T ss_pred cCCCceEEEecCCC--eEEEEc-CCeeEEecccC-------CCCchhheecchhcccceEEEEEECCCCCeEEEEeeccc
Confidence 34556666665544 455554 44699999976 245566666654 45666677777773444442
Q ss_pred ---CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeC--CCCCEEEEEec---CCcEEEEECCCC-cccccc---
Q 015484 187 ---HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHL--KNENLFGSAGD---DCQLMIWDLRTN-QTQQRV--- 254 (406)
Q Consensus 187 ---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p--~~~~~l~~~~~---dg~i~i~d~~~~-~~~~~~--- 254 (406)
-.|.+.+|.++.... +.+.+|.+....+...- ....+|+-+.. .+.+++.++... .....+
T Consensus 174 ~~~v~G~mQLYS~er~~s-------Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk 246 (494)
T 1bpo_A 174 QNRVVGAMQLYSVDRKVS-------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKK 246 (494)
T ss_dssp TTEEEEEEEEEESTTCCE-------EEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCE
T ss_pred CCcccceEEEeecccccc-------chheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccce
Confidence 247888999887432 44566665554444321 11234444433 378999998643 111111
Q ss_pred --------cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCc
Q 015484 255 --------KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRR 326 (406)
Q Consensus 255 --------~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~ 326 (406)
....+--.++..++... ++..-+.-|.|++||+.++.. +..-.-....|...+-+..... ++.....|.
T Consensus 247 ~vdv~fppe~~~DFPvamqvs~kyg-viyviTK~G~i~lyDleTgt~-i~~nrIs~~~iF~t~~~~~~~G-i~~Vnr~Gq 323 (494)
T 1bpo_A 247 AVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTC-IYMNRISGETIFVTAPHEATAG-IIGVNRKGQ 323 (494)
T ss_dssp EEECCCCTTSTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEEETTTTE-EEEEETTCE
T ss_pred eeeeeCCcccccCceeEEEecccCC-EEEEEecCceEEEEeccccee-eeeecccCCceEEecccCCCCc-EEEEccCce
Confidence 12234445788888777 888889999999999999776 5555555566666555554444 555557777
Q ss_pred EEEEeCCC
Q 015484 327 LMVWDLNR 334 (406)
Q Consensus 327 i~iwd~~~ 334 (406)
|.--.+..
T Consensus 324 Vl~v~v~e 331 (494)
T 1bpo_A 324 VLSVCVEE 331 (494)
T ss_dssp EEEEEECT
T ss_pred EEEEEEcc
Confidence 76655544
No 331
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.22 E-value=2.7 Score=41.56 Aligned_cols=233 Identities=10% Similarity=0.073 Sum_probs=128.6
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEE
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLW 194 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 194 (406)
...|++|.-..+| +|-.|+.+| +..||-..-.. ..... ......|.++.-..++ .|..|+.+| +..|
T Consensus 21 ~n~V~~I~qD~~G--~lWigT~~G-L~ryDG~~~~~-----~~~~~--~~~~~~i~~i~~d~~g--~lWigT~~G-l~~y 87 (758)
T 3ott_A 21 ASVVSCFLQDSEG--LIWIGSNKG-LFSYDGYSTQQ-----HFTYG--ENNNTRIYCGVIIDNT--YLYMGTDNG-ILVY 87 (758)
T ss_dssp CCCEEEEEECTTS--CEEEEESSC-EEEECSSCEEE-----CSCTT--STTSSCEEEEEEETTT--EEEEEETTE-EEEE
T ss_pred cceEEEEEECCCC--CEEEEECCC-ccccCCCceEE-----EEccC--CCCCceEEEEEEcCCC--cEEEEeCCC-eEEE
Confidence 4578999888877 355566777 66677433110 00000 1123468887766544 577776665 7889
Q ss_pred eCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccc--c--cccCCCeeEEEecCCC
Q 015484 195 DVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQR--V--KAHEKEVNYLSFNPYN 270 (406)
Q Consensus 195 d~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~--~~~~~~v~~i~~~~~~ 270 (406)
|..+..... . .......|.++... ++.+. .++.+ .|..+|..+++.... . ......|.++....++
T Consensus 88 d~~~~~f~~---~---~~~~~~~i~~i~~~--~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g 157 (758)
T 3ott_A 88 NYRADRYEQ---P---ETDFPTDVRTMALQ--GDTLW-LGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDN 157 (758)
T ss_dssp ETTTTEECC---C---SCCCCSCEEEEEEE--TTEEE-EEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTC
T ss_pred eCCCCEEEC---c---ccCCCceEEEEEec--CCcEE-EEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCC
Confidence 987643211 0 01112346666543 44444 45555 688899876553211 0 1123568888888877
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCcEEecC------CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc
Q 015484 271 EWVLATASSDTTVALFDMRKMTVPLHILSS------HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 344 (406)
. |..|+.. -|..+|..+.. ...+.. ....|.++...+++.. |..|+. +-+..+|..... .
T Consensus 158 ~--lWigt~~-Gl~~~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~d~~~~~-lWigt~-~Gl~~~~~~~~~-~------ 223 (758)
T 3ott_A 158 Q--IYVGTYN-GLCRYIPSNGK--FEGIPLPVHSSQSNLFVNSLLEDTTRQC-VWIGTE-GYLFQYFPSTGQ-I------ 223 (758)
T ss_dssp C--EEEEETT-EEEEEETTTTE--EEEECCCCCTTCSSCCEEEEEEETTTTE-EEEEEE-EEEEEEETTTTE-E------
T ss_pred C--EEEEeCC-CHhhCccCCCc--eEEecCCCccccccceeEEEEEECCCCE-EEEEEC-CCCeEEcCCCCe-E------
Confidence 7 3445554 47788876532 111111 1234888888877653 333443 457778865411 0
Q ss_pred cCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 345 EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 345 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
...... ....|.++...++|. +.+ |+. +-+.+++..++.+
T Consensus 224 -----~~~~~l--~~~~i~~i~~d~~g~-lWi-gT~-~Gl~~~~~~~~~~ 263 (758)
T 3ott_A 224 -----KQTEAF--HNNSIKSLALDGNGD-LLA-GTD-NGLYVYHNDTTPL 263 (758)
T ss_dssp -----EEEEEE--EEEEEEEEEECTTCC-EEE-EET-TEEEEECCTTSCC
T ss_pred -----EeccCC--CCCeEEEEEEcCCCC-EEE-EeC-CceeEEecCCCcE
Confidence 001111 123588888888887 444 343 4588888776543
No 332
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.22 E-value=0.67 Score=40.96 Aligned_cols=28 Identities=7% Similarity=0.105 Sum_probs=17.2
Q ss_pred CCCcEEEEEeCCC------cEEEEeCCCcccCCCc
Q 015484 370 NDPWVISSVADDN------TVQVWQMTDSIYRDDD 398 (406)
Q Consensus 370 ~~~~~l~s~~~dg------~i~iw~~~~~~~~~~~ 398 (406)
+++ +++.||.++ .|.++++.++.+.+..
T Consensus 316 ~~~-i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 316 NNS-LLIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp TTE-EEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred CCE-EEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 455 777777553 3666688888765543
No 333
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.06 E-value=1.7 Score=38.45 Aligned_cols=148 Identities=7% Similarity=0.067 Sum_probs=79.1
Q ss_pred CeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeee-eeeeccCccEEEEEeeCC---CCCEEEEEec-------
Q 015484 168 EGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAM-HVYEAHESVVEDVSWHLK---NENLFGSAGD------- 236 (406)
Q Consensus 168 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~i~~i~~~p~---~~~~l~~~~~------- 236 (406)
....|+|.|+++ .|+.+...|.|++++.... ....+..+ ............|+++|+ ++.++++-..
T Consensus 19 ~P~~i~~~pdG~-~l~V~e~~G~i~~~~~~g~-~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 19 HPWALAFLPDNH-GMLITLRGGELRHWQAGKG-LSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SEEEEEECSTTC-CEEEEETTTEEEEEETTTE-ECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CcEEEEEcCCCC-EEEEEeCCceEEEEeCCCc-eeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 457999999886 4667777899999985322 11111111 111122345789999985 4566655433
Q ss_pred CCcEEEEECCCCc----ccc----ccc---ccCCCeeEEEecCCCCcEEEEEeC-------------CCcEEEEeCCCCC
Q 015484 237 DCQLMIWDLRTNQ----TQQ----RVK---AHEKEVNYLSFNPYNEWVLATASS-------------DTTVALFDMRKMT 292 (406)
Q Consensus 237 dg~i~i~d~~~~~----~~~----~~~---~~~~~v~~i~~~~~~~~~l~~~~~-------------dg~i~vwd~~~~~ 292 (406)
...|..+++.... ... .+. ........|+|.|+|. ++++.+. .|.|.-++....-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 2356666654321 111 111 1112246799999996 4444332 2467777765320
Q ss_pred ------------CCcEEecCCCCCeEEEEEcC-CCCCEEEE
Q 015484 293 ------------VPLHILSSHTEEVFQVEWDP-NHETVLAS 320 (406)
Q Consensus 293 ------------~~~~~~~~h~~~v~~i~~~p-~~~~~l~s 320 (406)
.+-..-.++ .....++|+| .+. ++++
T Consensus 176 p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~-l~~~ 214 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNA-LWLN 214 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTE-EEEE
T ss_pred CCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCC-EEEE
Confidence 111111222 3468899999 554 4443
No 334
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=94.73 E-value=0.55 Score=40.56 Aligned_cols=144 Identities=10% Similarity=-0.010 Sum_probs=70.9
Q ss_pred cEEEEEeC----C-----CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC-----CeEEEE
Q 015484 129 NLVGTKTS----S-----CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD-----NKICLW 194 (406)
Q Consensus 129 ~~l~~~~~----d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-----g~i~iw 194 (406)
.+++.|+. + ..+.+||..+..-.. ...+........++.+ ++. +++.|+.+ ..+.+|
T Consensus 72 ~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~------~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~y 142 (308)
T 1zgk_A 72 LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSP------CAPMSVPRNRIGVGVI--DGH-IYAVGGSHGCIHHNSVERY 142 (308)
T ss_dssp EEEEECCEEEETTEEEECCCEEEEETTTTEEEE------CCCCSSCCBTCEEEEE--TTE-EEEECCEETTEECCCEEEE
T ss_pred EEEEECCCcCCCCCCeecceEEEECCCCCeEeE------CCCCCcCccccEEEEE--CCE-EEEEcCCCCCcccccEEEE
Confidence 56666665 2 358888887643221 1111111111112222 344 66776643 357888
Q ss_pred eCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC-----CcEEEEECCCCccc--ccccccCCCeeEEEec
Q 015484 195 DVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD-----CQLMIWDLRTNQTQ--QRVKAHEKEVNYLSFN 267 (406)
Q Consensus 195 d~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~~~--~~~~~~~~~v~~i~~~ 267 (406)
|+.+..- ..+............ +.. ++.+++.|+.+ ..+.+||+.+.+-. ..+.........+.+
T Consensus 143 d~~~~~W----~~~~~~p~~r~~~~~-~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~- 214 (308)
T 1zgk_A 143 EPERDEW----HLVAPMLTRRIGVGV-AVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL- 214 (308)
T ss_dssp ETTTTEE----EECCCCSSCCBSCEE-EEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-
T ss_pred CCCCCeE----eECCCCCccccceEE-EEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-
Confidence 8876431 111111111111112 222 46777777754 45889998776432 122111122222333
Q ss_pred CCCCcEEEEEeCC-----CcEEEEeCCCC
Q 015484 268 PYNEWVLATASSD-----TTVALFDMRKM 291 (406)
Q Consensus 268 ~~~~~~l~~~~~d-----g~i~vwd~~~~ 291 (406)
++. +++.|+.+ ..+.+||+.+.
T Consensus 215 -~~~-iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 215 -HNC-IYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp -TTE-EEEECCBCSSSBCCCEEEEETTTT
T ss_pred -CCE-EEEEeCCCCCCccceEEEEeCCCC
Confidence 344 77777654 46899998764
No 335
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.69 E-value=2.6 Score=38.75 Aligned_cols=122 Identities=7% Similarity=0.086 Sum_probs=63.6
Q ss_pred eEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee------CCCCCeeEEEecCC--
Q 015484 106 VEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK------GHDKEGYGLSWSPF-- 177 (406)
Q Consensus 106 ~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~~~~-- 177 (406)
+++.....--...+.|+|.|++ .++++-...+.|++++..+.... .+..+. ........|+|+|+
T Consensus 17 f~~~~~a~~l~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~~~------~~~~~~~~~~~~~g~~Gllgia~~Pdf~ 89 (454)
T 1cru_A 17 FDKKVILSNLNKPHALLWGPDN-QIWLTERATGKILRVNPESGSVK------TVFQVPEIVNDADGQNGLLGFAFHPDFK 89 (454)
T ss_dssp SCEEEEECCCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEE------EEEECTTCCCCTTSSCSEEEEEECTTTT
T ss_pred eEEEEEECCCCCceEEEEcCCC-cEEEEEcCCCEEEEEECCCCcEe------EEecCCccccccCCCCceeEEEECCCcC
Confidence 4444443334577899999999 56665444457888876432111 111111 12456779999995
Q ss_pred -CCCeEEEecC-------------CCeEEEEeCCCccCC-ceeeee-eeee-ccCccEEEEEeeCCCCCEEEEEec
Q 015484 178 -KEGYLVSGSH-------------DNKICLWDVSALAQD-KVIDAM-HVYE-AHESVVEDVSWHLKNENLFGSAGD 236 (406)
Q Consensus 178 -~~~~l~s~~~-------------dg~i~iwd~~~~~~~-~~~~~~-~~~~-~~~~~i~~i~~~p~~~~~l~~~~~ 236 (406)
+. .|..+.. ...|.-+++...... ...+.+ ..+. ........|+|.| ++.++++.+.
T Consensus 90 ~~g-~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd 163 (454)
T 1cru_A 90 NNP-YIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGD 163 (454)
T ss_dssp TSC-EEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECC
T ss_pred cCC-EEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECC
Confidence 44 4444332 235555655432110 011111 1111 1123478899999 5677776553
No 336
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=94.52 E-value=4.2 Score=40.42 Aligned_cols=157 Identities=10% Similarity=0.062 Sum_probs=80.4
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC----CCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG----HDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~----h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
.+.|.+|+++|..+..+.+++..+.|...+-... .+.++..... ....+.+|++.|...+.++.+..+..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~------tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~ 87 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTS------KWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYV 87 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTT------EEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCT
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCC------CeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccC
Confidence 4789999999987677777777776655443221 1221111000 12468999999865434544432211
Q ss_pred ----EEEEeCCCccCCceeeeeee-ee-----ccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccc-----
Q 015484 191 ----ICLWDVSALAQDKVIDAMHV-YE-----AHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK----- 255 (406)
Q Consensus 191 ----i~iwd~~~~~~~~~~~~~~~-~~-----~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----- 255 (406)
-.||....+. ...+.+.. +. .....+..++++|.+...+.++...+.|. .....++.-..+.
T Consensus 88 ~~~~~~v~~S~DgG--~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~ 164 (789)
T 1sqj_A 88 GDEWAAFYVSEDRG--QSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDA 164 (789)
T ss_dssp TSSCCEEEEESSTT--SEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCC
T ss_pred CCcccEEEEECCCC--CcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccc
Confidence 3344333322 22222211 00 00113567888886666776666444432 2333344322221
Q ss_pred -ccCCCeeEEEecCCCCcEEEEEeCC
Q 015484 256 -AHEKEVNYLSFNPYNEWVLATASSD 280 (406)
Q Consensus 256 -~~~~~v~~i~~~~~~~~~l~~~~~d 280 (406)
.....+..+.++|.....++++..+
T Consensus 165 ~~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 165 FTNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp CSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred cCCCCCeEEEEECCCCCCEEEEEEcC
Confidence 1124578899988654355555544
No 337
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=94.43 E-value=1.2 Score=38.45 Aligned_cols=101 Identities=8% Similarity=0.111 Sum_probs=52.2
Q ss_pred eEEEecCC--------CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec------CCcEEEEECC
Q 015484 181 YLVSGSHD--------NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD------DCQLMIWDLR 246 (406)
Q Consensus 181 ~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~------dg~i~i~d~~ 246 (406)
+++.|+.+ ..+.+||+.+.. ...+.......... +++.. ++.+++.|+. -..+.+||+.
T Consensus 101 lyv~GG~~~~~~~~~~~~~~~~d~~~~~----W~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~ 173 (315)
T 4asc_A 101 IYVVGGREIKDGERCLDSVMCYDRLSFK----WGESDPLPYVVYGH-TVLSH--MDLVYVIGGKGSDRKCLNKMCVYDPK 173 (315)
T ss_dssp EEEECCEESSTTCCBCCCEEEEETTTTE----EEECCCCSSCCBSC-EEEEE--TTEEEEECCBCTTSCBCCCEEEEETT
T ss_pred EEEEeCCcCCCCCcccceEEEECCCCCc----EeECCCCCCcccce-eEEEE--CCEEEEEeCCCCCCcccceEEEEeCC
Confidence 66677632 458888887643 21111111111111 12222 5677778776 2468899988
Q ss_pred CCccc--ccccccCCCeeEEEecCCCCcEEEEEeCCC-----cEEEEeCCCC
Q 015484 247 TNQTQ--QRVKAHEKEVNYLSFNPYNEWVLATASSDT-----TVALFDMRKM 291 (406)
Q Consensus 247 ~~~~~--~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg-----~i~vwd~~~~ 291 (406)
+.+-. ..+......-.++.+ ++. +++.|+.++ .+.+||+.+.
T Consensus 174 ~~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 174 KFEWKELAPMQTARSLFGATVH--DGR-IIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp TTEEEECCCCSSCCBSCEEEEE--TTE-EEEEEEECSSSEEEEEEEEETTTT
T ss_pred CCeEEECCCCCCchhceEEEEE--CCE-EEEEeccCCCCccceEEEEECCCC
Confidence 76432 222111111222222 344 777777654 5888998764
No 338
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=93.63 E-value=2.4 Score=36.57 Aligned_cols=63 Identities=11% Similarity=0.253 Sum_probs=34.6
Q ss_pred CCCEEEEEec------CCcEEEEECCCCcccc--cccccCCCeeEEEecCCCCcEEEEEeCCC-----cEEEEeCCCCC
Q 015484 227 NENLFGSAGD------DCQLMIWDLRTNQTQQ--RVKAHEKEVNYLSFNPYNEWVLATASSDT-----TVALFDMRKMT 292 (406)
Q Consensus 227 ~~~~l~~~~~------dg~i~i~d~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~ 292 (406)
++.+++.|+. -..+.+||+.+.+-.. .+........++.+ ++. +++.|+.++ .+.+||+.+..
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGK-IVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE-EEEEEEEETTEEEEEEEEEETTTCC
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCE-EEEEcCcCCCCccceEEEEECCCCe
Confidence 5677777764 2358899998764321 12111111222222 344 777776432 57789987643
No 339
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.31 E-value=2.6 Score=41.25 Aligned_cols=191 Identities=9% Similarity=0.055 Sum_probs=93.6
Q ss_pred cEEEEEeCC----CeEEEEeCCCccccccCCCCCce-ee----eCCCCCeeEEEecC-CCCCeEEEecCC------CeEE
Q 015484 129 NLVGTKTSS----CEVYVFDCAKQAEKQQDDCDPDL-RL----KGHDKEGYGLSWSP-FKEGYLVSGSHD------NKIC 192 (406)
Q Consensus 129 ~~l~~~~~d----g~i~iw~~~~~~~~~~~~~~~~~-~~----~~h~~~v~~l~~~~-~~~~~l~s~~~d------g~i~ 192 (406)
.+++.|+.+ ..+.+||..+..- .... .+ ......-.+++..+ ++. +++.|+.+ ..+.
T Consensus 399 ~iyv~GG~~~~~~~~v~~yd~~~~~W------~~~~~~~p~~~~p~~R~~hs~~~~~~~~~-lyv~GG~~~~~~~~~dv~ 471 (695)
T 2zwa_A 399 DVFYMGGSNPYRVNEILQLSIHYDKI------DMKNIEVSSSEVPVARMCHTFTTISRNNQ-LLLIGGRKAPHQGLSDNW 471 (695)
T ss_dssp CEEEECCBSSSBCCCEEEEEECSSCE------EEEECCCCCSCCCCCCBSCEEEEETTTTE-EEEECCBSSTTCBCCCCE
T ss_pred EEEEECCCCCCCcCcEEEEECCCCeE------EEeccCCCCCCCCccccceEEEEEccCCE-EEEEcCCCCCCCccccEE
Confidence 567777643 4588888876321 1111 10 00111112333332 455 77777654 3577
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC--cEEEEECCCCccccc-----ccccCCCeeEEE
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC--QLMIWDLRTNQTQQR-----VKAHEKEVNYLS 265 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~-----~~~~~~~v~~i~ 265 (406)
+||+.+.. +..+.........-..+.+. ++.+++.|+.++ .+.+||+.+..-... +........++.
T Consensus 472 ~yd~~t~~----W~~~~~~p~~R~~h~~~~~~--~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v 545 (695)
T 2zwa_A 472 IFDMKTRE----WSMIKSLSHTRFRHSACSLP--DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLE 545 (695)
T ss_dssp EEETTTTE----EEECCCCSBCCBSCEEEECT--TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEE
T ss_pred EEeCCCCc----EEECCCCCCCcccceEEEEc--CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEE
Confidence 88887642 21111111111111222222 578888887655 689999987653211 211222223355
Q ss_pred ecCCCCcEEEEEeC--C-----CcEEEEeCCCCCC--C-----cEEec-CCCCCeEEEEEcCCCCCEEEEEeC-------
Q 015484 266 FNPYNEWVLATASS--D-----TTVALFDMRKMTV--P-----LHILS-SHTEEVFQVEWDPNHETVLASSAD------- 323 (406)
Q Consensus 266 ~~~~~~~~l~~~~~--d-----g~i~vwd~~~~~~--~-----~~~~~-~h~~~v~~i~~~p~~~~~l~s~~~------- 323 (406)
+......+++.|+. + ..+.+||+.+..- . +.... ........+.+ .++ .+++.|+.
T Consensus 546 ~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~-~~~-~iyv~GG~~~~~~~~ 623 (695)
T 2zwa_A 546 FDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI-TPR-KLLIVGGTSPSGLFD 623 (695)
T ss_dssp EETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEE-ETT-EEEEECCBCSSCCCC
T ss_pred EeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEe-CCC-EEEEECCccCCCCCC
Confidence 56552337777765 2 3588999887551 1 11111 11112222222 224 36777764
Q ss_pred -CCcEEEEeCCC
Q 015484 324 -DRRLMVWDLNR 334 (406)
Q Consensus 324 -dg~i~iwd~~~ 334 (406)
...+.+||+.+
T Consensus 624 ~~~~v~~yd~~t 635 (695)
T 2zwa_A 624 RTNSIISLDPLS 635 (695)
T ss_dssp TTTSEEEEETTT
T ss_pred CCCeEEEEECCC
Confidence 34588888876
No 340
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=93.01 E-value=4.8 Score=36.02 Aligned_cols=146 Identities=5% Similarity=-0.009 Sum_probs=70.1
Q ss_pred CeeEEEecCCC-CCeEEEecCCCeEEEEeCCCccCCceeeeeeeee----------------ccCccEEEEEeeCCCCCE
Q 015484 168 EGYGLSWSPFK-EGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYE----------------AHESVVEDVSWHLKNENL 230 (406)
Q Consensus 168 ~v~~l~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----------------~~~~~i~~i~~~p~~~~~ 230 (406)
.|.++++.|.+ .+.|.++...+.|... ..+.. .+..+.... .....+.+|.++|.+...
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S--~DgG~--tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~ 191 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRS--TDHGA--SWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKH 191 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEE--SSTTS--BCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTC
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEE--cCCCC--CeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCE
Confidence 57789998743 3366666666655443 22211 111111100 112357889998854444
Q ss_pred EEEEecCCcEEEEECCCCcccccccc-------------cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEE
Q 015484 231 FGSAGDDCQLMIWDLRTNQTQQRVKA-------------HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHI 297 (406)
Q Consensus 231 l~~~~~dg~i~i~d~~~~~~~~~~~~-------------~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 297 (406)
+..+..++.|...+ ..++....+.. ....+.+|.++|.....|.++...+ |...+-. ......
T Consensus 192 l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D~--G~tW~~ 267 (394)
T 3b7f_A 192 LYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDRR--EGVWKR 267 (394)
T ss_dssp EEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEETT--TTEEEC
T ss_pred EEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCCC--CCcceE
Confidence 44454444444432 22332222110 0134889999987443666676554 4444322 111111
Q ss_pred ec--CCC---CCeEEEEEcCCCCCEEEEE
Q 015484 298 LS--SHT---EEVFQVEWDPNHETVLASS 321 (406)
Q Consensus 298 ~~--~h~---~~v~~i~~~p~~~~~l~s~ 321 (406)
+. ... ..+..+.++|..+..|..+
T Consensus 268 ~~~~l~~~~~~~~~~i~~~p~~~~~l~~~ 296 (394)
T 3b7f_A 268 IGDAMPREVGDIGFPIVVHQRDPRTVWVF 296 (394)
T ss_dssp GGGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred CCCCCCCCCccceEEEEECCCCCCEEEEE
Confidence 11 111 3467788887543334444
No 341
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=92.36 E-value=5.4 Score=35.05 Aligned_cols=146 Identities=13% Similarity=0.152 Sum_probs=80.0
Q ss_pred CCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeee-eeeeccCccEEEEEeeCC---CCCEEEEEe--cCCc
Q 015484 166 DKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAM-HVYEAHESVVEDVSWHLK---NENLFGSAG--DDCQ 239 (406)
Q Consensus 166 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~i~~i~~~p~---~~~~l~~~~--~dg~ 239 (406)
-...+.|+|.|+|. ++++--..|.|++++...+.. ..+..+ ..+.........|+++|+ ++.++++-+ .++.
T Consensus 31 L~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~-~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 31 LNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRK-TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCE-EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred CCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcE-eeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 34567999999987 666665589999998654322 111101 111223456889999984 355554322 3455
Q ss_pred EEEEECCCCc----c---cc----ccc-ccCCCeeEEEecCCCCcEEEEEeC-------------CCcEEEEeCCCCC--
Q 015484 240 LMIWDLRTNQ----T---QQ----RVK-AHEKEVNYLSFNPYNEWVLATASS-------------DTTVALFDMRKMT-- 292 (406)
Q Consensus 240 i~i~d~~~~~----~---~~----~~~-~~~~~v~~i~~~~~~~~~l~~~~~-------------dg~i~vwd~~~~~-- 292 (406)
|.-|.+..+. . .. .+. ........|.|.|+|. ++++.+. .|.|.-++....-
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~ 187 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAP 187 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCT
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccccCCCCCCCEEEEEeCCCCccC
Confidence 6666655421 1 11 111 1223446799999998 5555332 3555555554320
Q ss_pred -CC----cEEecCCCCCeEEEEEcCCCC
Q 015484 293 -VP----LHILSSHTEEVFQVEWDPNHE 315 (406)
Q Consensus 293 -~~----~~~~~~h~~~v~~i~~~p~~~ 315 (406)
.| ...-.+|. ....++|+|++.
T Consensus 188 ~nPf~~~~i~a~G~R-Np~Gla~dp~G~ 214 (347)
T 3das_A 188 GNPFPGSPVYSYGHR-NVQGLAWDDKQR 214 (347)
T ss_dssp TCSSTTCCEEEBCCS-BCCEEEECTTCC
T ss_pred CCCCCCCeEEeeCCC-CcceEEECCCCC
Confidence 00 11122443 456899999875
No 342
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=92.20 E-value=6.1 Score=35.29 Aligned_cols=156 Identities=8% Similarity=-0.040 Sum_probs=73.7
Q ss_pred CCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeee-eec---------cCccEEEEEeeCCCCCEEEEEec
Q 015484 167 KEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHV-YEA---------HESVVEDVSWHLKNENLFGSAGD 236 (406)
Q Consensus 167 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~---------~~~~i~~i~~~p~~~~~l~~~~~ 236 (406)
..+.+|.+.|...+.|..+..++.|... ..+.. .+..+.. ... ....+.+|.++|.+...+.+++.
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s--~DgG~--tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~ 252 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFES--TDAGT--DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH 252 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEE--SSTTS--SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEE--CCCCC--CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC
Confidence 4578999988543356656544544333 22211 1111110 000 01348889999865566666665
Q ss_pred CCcEEEEECCCCcccccccc--cC---CCeeEEEecCCCCcEEEEEeC-----------CCcEEEEeCCCCCCCcEEecC
Q 015484 237 DCQLMIWDLRTNQTQQRVKA--HE---KEVNYLSFNPYNEWVLATASS-----------DTTVALFDMRKMTVPLHILSS 300 (406)
Q Consensus 237 dg~i~i~d~~~~~~~~~~~~--~~---~~v~~i~~~~~~~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~ 300 (406)
.+ |...+- .++....+.. .. ..+.++.++|.....+.++.. ++...+|........-..+..
T Consensus 253 ~g-l~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~ 330 (394)
T 3b7f_A 253 CG-IYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDR 330 (394)
T ss_dssp TE-EEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECB
T ss_pred Ce-EEEeCC-CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCC
Confidence 44 544432 2332222211 11 345678888754334444432 333456655443222222211
Q ss_pred --CC-C-----CeEEEEEcCCCCCEEEEEeCCCcEE
Q 015484 301 --HT-E-----EVFQVEWDPNHETVLASSADDRRLM 328 (406)
Q Consensus 301 --h~-~-----~v~~i~~~p~~~~~l~s~~~dg~i~ 328 (406)
.. . ....++++|..+..|+.++.++.|.
T Consensus 331 glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~ 366 (394)
T 3b7f_A 331 GLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIW 366 (394)
T ss_dssp TSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEE
T ss_pred CCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEE
Confidence 00 0 1135788886533355666565554
No 343
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=91.53 E-value=11 Score=37.00 Aligned_cols=239 Identities=7% Similarity=-0.050 Sum_probs=121.8
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee-------CCCCCeeEEEecCCCCCeEEEecCC
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK-------GHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-------~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
..|.++.-..++. |-.|+.+| +..++...... .....+. -....|.++.-..++. |-.|+ +
T Consensus 324 ~~v~~i~~D~~g~--lWiGt~~G-l~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--lWigt-~ 391 (758)
T 3ott_A 324 NQFYSLFRDSKGF--YWFGGANG-LIRFTDPAGER------HDAIWYRMGDKTYPLSHNRIRHIYEDKEQQ--LWIAT-D 391 (758)
T ss_dssp CBEEEEEECTTCC--EEEEETTE-EEEESCTTSSC------CCCEEECTTCSSSCCSCSCEEEEEECTTSC--EEEEE-T
T ss_pred ceEEEEEEcCCCC--EEEeeCCc-ceeeccccccc------ceeEEeccCCcCCCCCCCceEEEEECCCCC--EEEEe-C
Confidence 3567776666663 44455555 55565543110 0111111 0124578887766554 55565 4
Q ss_pred CeEEEEeCCCccCCceeeeeeeeec----cCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC-----ccc---ccc--
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEA----HESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN-----QTQ---QRV-- 254 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~----~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~-----~~~---~~~-- 254 (406)
+-|..+|..++.. ........ ....|.++...+ ...|-.|+..+-|.++|.++. ... ..+
T Consensus 392 ~GL~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~i~~d~--~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 465 (758)
T 3ott_A 392 GSINRYDYATRQF----IHYNIVDNTGTYNTNWTYYIFEDT--AGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSV 465 (758)
T ss_dssp TEEEEEETTTTEE----EEEEEECCC--CBSSSEEEEEECT--TSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECG
T ss_pred CcHhhcCcCCCcE----EEeecCCCcCCCCCceEEEEEEcC--CCCEEEEECCCceEEEccccccccCCcceeccccccc
Confidence 5688899876432 11111010 124577777654 344445776667888886531 111 011
Q ss_pred -c-ccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCC----CCCeEEEEEcCCCCCEEEEEeCCCcEE
Q 015484 255 -K-AHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSH----TEEVFQVEWDPNHETVLASSADDRRLM 328 (406)
Q Consensus 255 -~-~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h----~~~v~~i~~~p~~~~~l~s~~~dg~i~ 328 (406)
. .....|.++...++|. +.+.++..+-|..+|..+.. +..+... ...+.++....+|. |..|+..| +.
T Consensus 466 ~~~l~~~~i~~i~~d~~g~-lWi~~~t~~Gl~~~d~~~~~--~~~~~~~~~~~~~~~~~i~~d~~g~--lWigt~~G-l~ 539 (758)
T 3ott_A 466 HNGLSGMFINQIIPDNEGN-VWVLLYNNKGIDKINPRTRE--VTKLFADELTGEKSPNYLLCDEDGL--LWVGFHGG-VM 539 (758)
T ss_dssp GGTCSCSCEEEEEECTTSC-EEEEETTCSSEEEEETTTTE--EEEECTTTSCGGGCEEEEEECTTSC--EEEEETTE-EE
T ss_pred ccccccceeeeEEEcCCCC-EEEEccCCCCcEEEeCCCCc--eEEecCCCcCCCcccceEEECCCCC--EEEEecCc-eE
Confidence 1 1224588999988888 54423333558889987543 3332211 24678888888885 34455544 77
Q ss_pred EEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 329 VWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 329 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.|+.....-... . ..+ + ....|.++... +|. +.++ +..| |..+++.+..+
T Consensus 540 ~~~~~~~~~~~~--~-~~g-------l--~~~~i~~i~~~-~g~-lWi~-t~~G-l~~~~~~~~~~ 589 (758)
T 3ott_A 540 RINPKDESQQSI--S-FGS-------F--SNNEILSMTCV-KNS-IWVS-TTNG-LWIIDRKTMDA 589 (758)
T ss_dssp EECC--CCCCBC--C-CCC------------CCEEEEEEE-TTE-EEEE-ESSC-EEEEETTTCCE
T ss_pred EEecCCCceEEe--c-ccC-------C--CccceEEEEEC-CCC-EEEE-CCCC-eEEEcCCCcee
Confidence 788654221100 0 000 0 12346666653 554 4444 3444 66677766543
No 344
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=90.18 E-value=6.9 Score=35.98 Aligned_cols=117 Identities=10% Similarity=0.120 Sum_probs=61.9
Q ss_pred CeeEEEecCCCCcEEEEEeCCCcEEEEeCCCC--CCCcEEec---------CCCCCeEEEEEcCC---CCCEEEEEeC--
Q 015484 260 EVNYLSFNPYNEWVLATASSDTTVALFDMRKM--TVPLHILS---------SHTEEVFQVEWDPN---HETVLASSAD-- 323 (406)
Q Consensus 260 ~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~---------~h~~~v~~i~~~p~---~~~~l~s~~~-- 323 (406)
.-..|+|.|++...|+++...|.|++++.... ..++..+. ........|+|+|+ +..+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 45789999998423455567899999975432 12233221 11456889999996 2234444332
Q ss_pred C----------CcEEEEeCCCCCcccccccccCCCCeeEEEec--CCCCCeeeEEeCCCCCcEEEEEeCC
Q 015484 324 D----------RRLMVWDLNRIGDEQLELDAEDGPPELLFSHG--GHKAKISDFSWNKNDPWVISSVADD 381 (406)
Q Consensus 324 d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~~l~s~~~d 381 (406)
+ ..|.-|.+........ . ....+.++... ........|+|.|+|. |.++.+..
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~--d--~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd~ 159 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQV--D--LRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGDG 159 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSB--C--GGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECCT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCcc--C--CCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCCC
Confidence 1 1344455542110000 0 00122333221 1223468899999997 66666643
No 345
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=90.07 E-value=4.4 Score=35.54 Aligned_cols=51 Identities=10% Similarity=-0.014 Sum_probs=25.4
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec------CCcEEEEEC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD------DCQLMIWDL 245 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~------dg~i~i~d~ 245 (406)
..+.+||+.+.. +..+.........-.+++.. ++.+++.|+. ...+.+||+
T Consensus 168 ~~v~~yd~~~~~----W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 168 KFLLSFDPSTQQ----WSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp CEEEEEETTTTE----EEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEEC
T ss_pred ccEEEEeCCCCc----EEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEe
Confidence 578889987743 22222211111110222333 5677777764 345777876
No 346
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=88.97 E-value=19 Score=35.44 Aligned_cols=114 Identities=9% Similarity=0.034 Sum_probs=60.1
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC----CCCCeeEEEecCCCCCeEEEecCC---
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG----HDKEGYGLSWSPFKEGYLVSGSHD--- 188 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~----h~~~v~~l~~~~~~~~~l~s~~~d--- 188 (406)
+.|..|+++|.++..+.++...|.|+..+-... .+.++....+ ....|.+|++.|.+.+.++.+...
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~------tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~ 96 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDPSTE------TWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTN 96 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEETTTT------EEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSS
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCCCCC------CEEECcCccCcccccCCCcceEEeCCCCCCEEEEEeccccc
Confidence 389999999987666777776666555543321 1111111001 124588999998654455544321
Q ss_pred ----CeEEEEeCCCccCCceeeeeee-ee--cc---CccEEEEEeeCCCCCEEEEEecC
Q 015484 189 ----NKICLWDVSALAQDKVIDAMHV-YE--AH---ESVVEDVSWHLKNENLFGSAGDD 237 (406)
Q Consensus 189 ----g~i~iwd~~~~~~~~~~~~~~~-~~--~~---~~~i~~i~~~p~~~~~l~~~~~d 237 (406)
+...||.-..+... ++.+.. +. .+ ...+..|+++|.+...+.++...
T Consensus 97 ~~~~~~~~l~~S~DgG~T--W~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 97 DWLPNMGAILRSTDRGET--WEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp SSSCCCCEEEEESSSSSS--CEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred ccccCCccEEEeCCCCCC--cccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 12455554443322 222111 10 00 11246789999777777676643
No 347
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=88.59 E-value=7.3 Score=38.03 Aligned_cols=111 Identities=12% Similarity=0.137 Sum_probs=57.5
Q ss_pred CCCcEEEEEeCC------CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC--eEEEEeCC
Q 015484 126 QKPNLVGTKTSS------CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN--KICLWDVS 197 (406)
Q Consensus 126 ~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~iwd~~ 197 (406)
++ .+++.|+.+ ..+.+||..+..-.. ...+...... .+++...++. +++.|+.++ .+.+||+.
T Consensus 451 ~~-~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~------~~~~p~~R~~-h~~~~~~~~~-iyv~GG~~~~~~v~~yd~~ 521 (695)
T 2zwa_A 451 NN-QLLLIGGRKAPHQGLSDNWIFDMKTREWSM------IKSLSHTRFR-HSACSLPDGN-VLILGGVTEGPAMLLYNVT 521 (695)
T ss_dssp TT-EEEEECCBSSTTCBCCCCEEEETTTTEEEE------CCCCSBCCBS-CEEEECTTSC-EEEECCBCSSCSEEEEETT
T ss_pred CC-EEEEEcCCCCCCCccccEEEEeCCCCcEEE------CCCCCCCccc-ceEEEEcCCE-EEEECCCCCCCCEEEEECC
Confidence 44 567777643 357888887742211 1111111111 1222222455 778887655 68899987
Q ss_pred CccCCceeeeeee---eeccCccEEEEEeeCCCCCEEEEEec--C-----CcEEEEECCCCc
Q 015484 198 ALAQDKVIDAMHV---YEAHESVVEDVSWHLKNENLFGSAGD--D-----CQLMIWDLRTNQ 249 (406)
Q Consensus 198 ~~~~~~~~~~~~~---~~~~~~~i~~i~~~p~~~~~l~~~~~--d-----g~i~i~d~~~~~ 249 (406)
+.. +..+.. .........++.+....+.+++.|+. + ..+.+||+.+..
T Consensus 522 t~~----W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 522 EEI----FKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TTE----EEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCc----eEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 743 211111 11111122234455433677777775 2 458899998876
No 348
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=86.58 E-value=16 Score=31.96 Aligned_cols=117 Identities=5% Similarity=-0.065 Sum_probs=60.6
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCC-CCCeeEEEe--cCCCCCeEEEe-cCCCeEEEEeCCCccCCce
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGH-DKEGYGLSW--SPFKEGYLVSG-SHDNKICLWDVSALAQDKV 204 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~--~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~ 204 (406)
.++++++.||.|+-+|..++... -.+... ..++....- .+.+...++.. +.||.|..++..++.....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~--------W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~ 82 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHII--------WSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLP 82 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEE--------EEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEE--------EEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEee
Confidence 36777888888888887764332 111111 011111000 01122133333 5899999999877632211
Q ss_pred eeeeeeeeccCccEEE---EEe-eC---CCCCEEEEEecCCcEEEEECCCCccccccc
Q 015484 205 IDAMHVYEAHESVVED---VSW-HL---KNENLFGSAGDDCQLMIWDLRTNQTQQRVK 255 (406)
Q Consensus 205 ~~~~~~~~~~~~~i~~---i~~-~p---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 255 (406)
+.. ..+ ...+++.. ... .+ ..+..+++|+.+|.+...|+++|+.+..+.
T Consensus 83 ~~~-~~l-v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 83 LSI-RQL-VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp EEH-HHH-HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred ecc-ccc-eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 110 000 01122221 000 00 035667799999999999999999887764
No 349
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=85.77 E-value=9.7 Score=33.31 Aligned_cols=112 Identities=9% Similarity=0.058 Sum_probs=63.2
Q ss_pred eEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEe--eCCCCCEEEEE-ecCCcEEEEECCCCcccccccc-
Q 015484 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSW--HLKNENLFGSA-GDDCQLMIWDLRTNQTQQRVKA- 256 (406)
Q Consensus 181 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~--~p~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~- 256 (406)
+++.++.||.|.-+|..+++....++.- ...++....- .+.++..++.. +.||.|..++..+|.....+..
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~-----~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~ 86 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPE-----NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIR 86 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGG-----GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHH
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCC-----ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccc
Confidence 7888999999999999887654333211 0011111110 01123344333 6899999999887754332211
Q ss_pred ---cCCCeeE---EEe-cC----CCCcEEEEEeCCCcEEEEeCCCCCCCcEEec
Q 015484 257 ---HEKEVNY---LSF-NP----YNEWVLATASSDTTVALFDMRKMTVPLHILS 299 (406)
Q Consensus 257 ---~~~~v~~---i~~-~~----~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 299 (406)
...++.. ... .+ .+. .+++|+.+|.+...|+++++. +..+.
T Consensus 87 ~lv~~SP~~~~~~pvv~~~~~~~~~g-~Vy~Gs~~g~l~ald~~tG~~-~W~~~ 138 (339)
T 2be1_A 87 QLVSTSPLHLKTNIVVNDSGKIVEDE-KVYTGSMRTIMYTINMLNGEI-ISAFG 138 (339)
T ss_dssp HHHTTCSEEEECC----------CCE-EEEECEEEEEEEEEETTTCCE-EEEES
T ss_pred cceeccccccCCCceeecccccccCC-EEEEEecCCEEEEEECCCCcE-EEEEe
Confidence 1122221 000 00 233 788999999999999999775 44443
No 350
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=85.15 E-value=2.9 Score=39.17 Aligned_cols=74 Identities=9% Similarity=0.161 Sum_probs=53.5
Q ss_pred CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC-----------C-cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCc
Q 015484 259 KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV-----------P-LHILSSHTEEVFQVEWDPNHETVLASSADDRR 326 (406)
Q Consensus 259 ~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-----------~-~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~ 326 (406)
.....+..+|+|++++++|-.+.++.++|++.... . +.... -.-.....+|.++| +...|..-|..
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G-~aYTtlfidSq 400 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG-NAYTTLFIDSQ 400 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS-EEEEEETTTTE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC-ceEeeeeecce
Confidence 34467889999997777777788999999984211 0 11122 23457889999999 45667778999
Q ss_pred EEEEeCCC
Q 015484 327 LMVWDLNR 334 (406)
Q Consensus 327 i~iwd~~~ 334 (406)
|.-|++..
T Consensus 401 vvkWni~~ 408 (638)
T 3sbq_A 401 VVKWNMEE 408 (638)
T ss_dssp EEEEEHHH
T ss_pred EEEEeccH
Confidence 99999975
No 351
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=83.22 E-value=21 Score=30.55 Aligned_cols=86 Identities=6% Similarity=0.055 Sum_probs=46.6
Q ss_pred CcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEE---eCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCC
Q 015484 238 CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATA---SSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNH 314 (406)
Q Consensus 238 g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~---~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~ 314 (406)
..|+..++...+.. .+. ... +..|++.++.+..+- .....|...++.... ...+..+.. ..|+|++
T Consensus 88 ~~Iy~i~~dg~~~~-~l~--~~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~--~~~lt~~~~----~~~~~~g 156 (302)
T 3s25_A 88 NSLCRIKRNGHGST-VLD--PDP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE--KKKIKNHYL----FTCNTSD 156 (302)
T ss_dssp EEEEEEETTSCCCE-EEE--CSC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC--CEEEESSCC----CCSEEET
T ss_pred CeEEEEeCCCCcce-Eee--cCC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC--eEEEeCCCc----eEeeEEC
Confidence 46777787765432 221 122 235677788444443 223456666665422 444444433 4567788
Q ss_pred CCEEEEEeCCCcEEEEeCCC
Q 015484 315 ETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 315 ~~~l~s~~~dg~i~iwd~~~ 334 (406)
+.+..+......|.+-++..
T Consensus 157 ~~iy~t~~g~~~Iy~~~l~g 176 (302)
T 3s25_A 157 RYFYYNNPKNGQLYRYDTAS 176 (302)
T ss_dssp TEEEEECTTTCCEEEEETTT
T ss_pred CEEEEEeCCCceEEEEECCC
Confidence 76555544456777777654
No 352
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=82.17 E-value=42 Score=33.25 Aligned_cols=153 Identities=12% Similarity=0.106 Sum_probs=78.2
Q ss_pred CCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeec----cCccEEEEEeeCCCCCEEEEEecCCc--
Q 015484 166 DKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEA----HESVVEDVSWHLKNENLFGSAGDDCQ-- 239 (406)
Q Consensus 166 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~i~~i~~~p~~~~~l~~~~~dg~-- 239 (406)
...|.+|+++|.....++++...+.|...+ .+. .....+..... ....+.+|+++|.+...+.++.....
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~--DgG--~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~ 89 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD--AGT--SKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGD 89 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE--TTT--TEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTS
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec--CCC--CCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCC
Confidence 458999999998766788887777665443 221 22322211110 13469999999855555545442211
Q ss_pred --EEEE-ECCCCcccccccc---------cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec------CC
Q 015484 240 --LMIW-DLRTNQTQQRVKA---------HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILS------SH 301 (406)
Q Consensus 240 --i~i~-d~~~~~~~~~~~~---------~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------~h 301 (406)
-.|| ....++.-..+.. ....+..++++|.....+..+...+.| |--......-..+. ..
T Consensus 90 ~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~TW~~~~~~~~~~~~ 167 (789)
T 1sqj_A 90 EWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSIPDAFTN 167 (789)
T ss_dssp SCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSSCEEETTSCCCCST
T ss_pred cccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcccCCCccCccccCC
Confidence 2233 3333433222210 111356788888655466666644433 32222221111211 11
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCC
Q 015484 302 TEEVFQVEWDPNHETVLASSADD 324 (406)
Q Consensus 302 ~~~v~~i~~~p~~~~~l~s~~~d 324 (406)
...+..+.++|.....+..+..+
T Consensus 168 ~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 168 GIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp TTCEEEEEECTTSTTCEEEEESS
T ss_pred CCCeEEEEECCCCCCEEEEEEcC
Confidence 24588899998654335555544
No 353
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=80.38 E-value=25 Score=29.62 Aligned_cols=222 Identities=14% Similarity=0.129 Sum_probs=120.0
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeC
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV 196 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 196 (406)
.|..|+.-.. +.++. . ||.|+.|-........ .|.. ....|..|+-.... .++. . ||.|..|-.
T Consensus 25 ~i~~ia~G~~--h~~~l-~-~G~v~~wG~n~~Gqlg----~p~~----~~~~i~~ia~G~~h--s~~l-~-~G~v~~wG~ 88 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLAL-K-GGKVLGWGANLNGQLT----MPAA----TQSGVDAIAAGNYH--SLAL-K-DGEVIAWGG 88 (282)
T ss_dssp SCCEEEECSS--EEEEE-E-TTEEEEEECCSSSTTS----CCGG----GGSCCCEEEECSSE--EEEE-E-TTEEEEEEC
T ss_pred CCcEEEeCCC--eEEEE-E-CCEEEEEeCCCCCCCC----CCcc----CCCCEEEEEeCCCE--EEEE-E-CCEEEEeeC
Confidence 5666665543 33444 4 8999999876632211 1111 12356667664322 2333 4 899999987
Q ss_pred CCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEE
Q 015484 197 SALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLAT 276 (406)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~ 276 (406)
+....... + ..-...|..|+.. ....++-. +|.|..|-......+.........|..++..... .++
T Consensus 89 n~~Gqlg~--P----~~~~~~v~~ia~G---~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~--~~~- 155 (282)
T 3qhy_B 89 NEDGQTTV--P----AEARSGVDAIAAG---AWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT--ALA- 155 (282)
T ss_dssp CTTSTTCC--C----GGGSSSEEEEEEE---TTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE--EEE-
T ss_pred CCCCCCCC--C----cccCCCeEEEECc---CCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE--EEE-
Confidence 65432211 0 0113467777765 33334445 9999999876533322222234567777765432 233
Q ss_pred EeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEec
Q 015484 277 ASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG 356 (406)
Q Consensus 277 ~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (406)
-. ||.|..|-.....+ +.....-...|..|+..... .++. .||.|..|-....++.-.. .
T Consensus 156 l~-~G~v~~wG~n~~gq-lg~p~~~~~~v~~i~~G~~h--s~al--~~G~v~~wG~n~~gqlg~p--------~------ 215 (282)
T 3qhy_B 156 VK-NGGVIAWGDNYFGQ-TTVPAEAQSGVDDVAGGIFH--SLAL--KDGKVIAWGDNRYKQTTVP--------T------ 215 (282)
T ss_dssp EE-TTEEEEEECCTTST-TSCCGGGGSSEEEEEECSSE--EEEE--ETTEEEEEECCTTSTTCCC--------G------
T ss_pred EE-CCEEEEecCCCCCC-CCCceecCCCeEEEEecCCE--EEEE--ECCeEEEEECCCCCCCCCC--------c------
Confidence 34 79999997654332 11111113568888776544 2444 5999999987654332110 0
Q ss_pred CCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 357 GHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 357 ~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
.....|..++-..... ++. . ||.|..|=-+.
T Consensus 216 ~~~~~v~~i~~G~~h~--~al-~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 216 EALSGVSAIASGEWYS--LAL-K-NGKVIAWGSSR 246 (282)
T ss_dssp GGGSSCCEEEECSSCE--EEE-E-TTEEEEESTTC
T ss_pred ccCCCceEEEcCCCEE--EEE-E-CCEEEEecCCC
Confidence 0123466666554432 333 3 88888886554
No 354
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=77.44 E-value=6.9 Score=36.72 Aligned_cols=107 Identities=9% Similarity=0.123 Sum_probs=65.7
Q ss_pred cEEEEeCCC----CCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecC
Q 015484 282 TVALFDMRK----MTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG 357 (406)
Q Consensus 282 ~i~vwd~~~----~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (406)
.+.+.|.+. ... +..+-.-......+..+|+|+++++++-.+.++.++|++......... . ..+...+.....
T Consensus 299 gv~ViD~~~~~~~~~~-~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k-~-~~~~~~~~ae~e 375 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSK-FTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGK-L-ADPRDVIVGEPE 375 (638)
T ss_dssp CCCEEECSCBTTBCCS-SEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTC-C-SCGGGGEEECCB
T ss_pred CeeEEccccccccCCc-eEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhcc-c-cCcccceEeecc
Confidence 366666665 222 222223334567889999999888888889999999998632211000 0 001111111111
Q ss_pred CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 358 HKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 358 h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
-.......+|.++|. ...|---|..|.-|++...
T Consensus 376 ~GlGPlHt~Fd~~G~-aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 376 LGLGPLHTTFDGRGN-AYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp CCSCEEEEEECSSSE-EEEEETTTTEEEEEEHHHH
T ss_pred CCCcccEEEECCCCc-eEeeeeecceEEEEeccHH
Confidence 223467789999995 6667778999999999764
No 355
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=73.67 E-value=38 Score=34.39 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=30.0
Q ss_pred cEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc
Q 015484 217 VVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV 254 (406)
Q Consensus 217 ~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 254 (406)
.+.+++..+ +..++++.+.|+++|+|++.+++++.+.
T Consensus 237 ~~~~~~~~~-~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEET-TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecC-CCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 466677665 6778889999999999999999876554
No 356
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=72.81 E-value=57 Score=29.84 Aligned_cols=116 Identities=12% Similarity=0.080 Sum_probs=60.1
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee---------CCCCCeeEEEecCC---CCCeEE
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK---------GHDKEGYGLSWSPF---KEGYLV 183 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~---------~h~~~v~~l~~~~~---~~~~l~ 183 (406)
.....|+|.|++...|+++...|.|++++...... ..++..+. ........|+|+|+ +..+.+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~-----~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv 88 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIF-----KEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYV 88 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBC-----SSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCee-----eeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEE
Confidence 56789999999842244456789999997543211 01111111 12456789999986 221333
Q ss_pred EecC--C----------CeEEEEeCCCccC----Cceeeeeeeee--ccCccEEEEEeeCCCCCEEEEEecC
Q 015484 184 SGSH--D----------NKICLWDVSALAQ----DKVIDAMHVYE--AHESVVEDVSWHLKNENLFGSAGDD 237 (406)
Q Consensus 184 s~~~--d----------g~i~iwd~~~~~~----~~~~~~~~~~~--~~~~~i~~i~~~p~~~~~l~~~~~d 237 (406)
+-+. + ..|.-|.+..... ....+.+.... ........|+|.| ++.++++.+..
T Consensus 89 ~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp-DG~LYv~~Gd~ 159 (463)
T 2wg3_C 89 SYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP-DGFLYIILGDG 159 (463)
T ss_dssp EEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT-TSCEEEEECCT
T ss_pred EEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC-CCcEEEEeCCC
Confidence 3221 1 1455566653210 00111111111 1123467899999 56777776653
No 357
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=72.79 E-value=74 Score=31.13 Aligned_cols=108 Identities=10% Similarity=0.019 Sum_probs=57.7
Q ss_pred CeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeec----cCccEEEEEeeCCCCCEEEEEecC------
Q 015484 168 EGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEA----HESVVEDVSWHLKNENLFGSAGDD------ 237 (406)
Q Consensus 168 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~i~~i~~~p~~~~~l~~~~~d------ 237 (406)
.|.+|+++|.+.+.+..+...|.|...+ ... .....+..... ....|.+|+++|.+...++++...
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~--D~G--~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~ 99 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWD--PST--ETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWL 99 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEE--TTT--TEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSS
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeC--CCC--CCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccc
Confidence 7899999998766777777666655543 221 22222211011 124589999998655444444321
Q ss_pred -CcEEEEE-CCCCcccccccc-c--------CCCeeEEEecCCCCcEEEEEeC
Q 015484 238 -CQLMIWD-LRTNQTQQRVKA-H--------EKEVNYLSFNPYNEWVLATASS 279 (406)
Q Consensus 238 -g~i~i~d-~~~~~~~~~~~~-~--------~~~v~~i~~~~~~~~~l~~~~~ 279 (406)
+...||- ...++.-..+.. . ...+..|+++|.....+..+..
T Consensus 100 ~~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~ 152 (737)
T 2cn3_A 100 PNMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTR 152 (737)
T ss_dssp CCCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECS
T ss_pred cCCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeec
Confidence 1233443 333443222211 0 1134678999876546666653
No 358
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=71.05 E-value=48 Score=28.23 Aligned_cols=141 Identities=8% Similarity=0.064 Sum_probs=71.8
Q ss_pred EEecCCCCCeEEEec----CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCC
Q 015484 172 LSWSPFKEGYLVSGS----HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT 247 (406)
Q Consensus 172 l~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~ 247 (406)
..|+++++ .|+-.. ....|...++..... ..+..+.. ..++|.+..++.+......|...++..
T Consensus 109 ~~~s~~g~-~Iy~~~~~~~~~~~Iy~~~~dGs~~-------~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g 176 (302)
T 3s25_A 109 IYASLIGN-YIYYLHYDTQTATSLYRIRIDGEEK-------KKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTAS 176 (302)
T ss_dssp EEEEEETT-EEEEEEESSSSCEEEEEEETTSCCC-------EEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTT
T ss_pred cEEEEeCC-EEEEEeecCCCCceEEEEECCCCCe-------EEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCC
Confidence 36777787 666554 334555555553221 12222222 345665566655544467888888876
Q ss_pred CcccccccccCCCeeEEEecCCCCcEEEEEeCC-CcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEe-CCC
Q 015484 248 NQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD-TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSA-DDR 325 (406)
Q Consensus 248 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~-~dg 325 (406)
+.....+. .... ..++|++.++..+...+ ..|..-++.... ...+.. ..+ ..|+|.++.+..+.. ..+
T Consensus 177 ~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~--~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~ 246 (302)
T 3s25_A 177 QSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN--PVVLTE--ANI--EHYNVYGSLIFYQRGGDNP 246 (302)
T ss_dssp TEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC--CEECSC--SCE--EEEEEETTEEEEEECSSSC
T ss_pred CCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC--eEEEeC--CCc--ceEEECCCEEEEEECCCCc
Confidence 54332222 2222 34568888444444333 356666666543 333432 233 347788875433322 234
Q ss_pred cEEEEeCCC
Q 015484 326 RLMVWDLNR 334 (406)
Q Consensus 326 ~i~iwd~~~ 334 (406)
.|..-++..
T Consensus 247 ~i~~~~~DG 255 (302)
T 3s25_A 247 ALCVVKNDG 255 (302)
T ss_dssp EEEEEETTS
T ss_pred EEEEEECCC
Confidence 555555543
No 359
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=70.13 E-value=52 Score=33.43 Aligned_cols=34 Identities=21% Similarity=0.040 Sum_probs=27.8
Q ss_pred CeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCC
Q 015484 168 EGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQD 202 (406)
Q Consensus 168 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 202 (406)
.+.+++..++.. ++++-+.|+++|+|++.+++..
T Consensus 237 ~~~~~~~~~~~~-~lftl~~D~~LRiWsl~t~~~v 270 (950)
T 4gq2_M 237 TIISMIFLSTYN-VLVMLSLDYKLKVLDLSTNQCV 270 (950)
T ss_dssp CEEEEEEETTTT-EEEEEETTCEEEEEETTTTEEE
T ss_pred eEEEEeecCCCc-EEEEEECCCEEEEEECCCCCeE
Confidence 456777777666 9999999999999999987643
No 360
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=69.25 E-value=61 Score=28.69 Aligned_cols=249 Identities=12% Similarity=0.065 Sum_probs=122.2
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCcee---ee-CCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccC---
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLR---LK-GHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQ--- 201 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~---~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--- 201 (406)
...+.-..+|.|+.|-.......-.+....... +. .....+..++.+.-.. ..+.-..||.|..|-.+....
T Consensus 63 ~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~-h~~al~~~G~v~~wG~n~~GqLG~ 141 (389)
T 3kci_A 63 QTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGK-HCLALSSEGEVYSWGEAEDGKLGH 141 (389)
T ss_dssp TEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCS-EEEEEETTSCEEEEECCGGGTTCS
T ss_pred CeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCC-eEEEEcCCCCEEEEeCCCCCcCCC
Confidence 344555789999999765532211111111110 11 1122344455555334 666777899999997654211
Q ss_pred ---Cceeeeeeeeec-cCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccc-----------ccc-cccCCCeeEEE
Q 015484 202 ---DKVIDAMHVYEA-HESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ-----------QRV-KAHEKEVNYLS 265 (406)
Q Consensus 202 ---~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~-----------~~~-~~~~~~v~~i~ 265 (406)
.....+ ..+.. ....|..|+. +....++...+|.|+.|-....-.+ ..+ ......|..++
T Consensus 142 g~~~~~~~p-~~v~~l~~~~i~~va~---G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia 217 (389)
T 3kci_A 142 GNRSPCDRP-RVIESLRGIEVVDVAA---GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIA 217 (389)
T ss_dssp SSCCCEEEE-EECGGGTTSCEEEEEE---CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEE
T ss_pred CCCccCcCC-eEecccCCCeEEEEEe---CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEE
Confidence 111111 11111 1235666664 3455566788999999975431111 001 11233566666
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCCC-----------CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 266 FNPYNEWVLATASSDTTVALFDMRKMTV-----------PLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 266 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~-----------~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
...... ..+.-..+|.|..|-.....+ |..........|..|+.... ..+.-..||.|..|-...
T Consensus 218 ~G~g~~-~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~---hs~alt~~G~v~~wG~n~ 293 (389)
T 3kci_A 218 CGSGDA-QTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ---FSVALTKSGAVYTWGKGD 293 (389)
T ss_dssp ECCSSC-EEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT---EEEEEETTSCEEEEECCG
T ss_pred EcCCCc-EEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC---EEEEEeCCCeEEEEeCCC
Confidence 543223 555567889999996543111 11111112235777766543 344557899999998754
Q ss_pred CCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 335 IGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
.++.-... ......+.....-....|..++.... ..+....||.|..|=.+.
T Consensus 294 ~GqLG~g~--~~~~~~P~~v~~l~~~~v~~ia~G~~---h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 294 YHRLGHGS--DDHVRRPRQVQGLQGKKVIAIATGSL---HCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp GGTTCSSS--CCCEEEEEECGGGTTCCEEEEEECSS---EEEEEETTCCEEEEECCT
T ss_pred CCCCCCCC--CccccCCeEeccCCCCCEEEEEeccC---eEEEECCCCCEEEeeCCC
Confidence 33211100 00000111111111234666665433 334446789999997653
No 361
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=64.52 E-value=77 Score=28.11 Aligned_cols=143 Identities=13% Similarity=0.240 Sum_probs=72.5
Q ss_pred cEEEEECCCC--ccccccc------ccCCCeeEEEec---CC---CCcEEEEEe-CCCcEEEEeCCCCCCCcEEe-----
Q 015484 239 QLMIWDLRTN--QTQQRVK------AHEKEVNYLSFN---PY---NEWVLATAS-SDTTVALFDMRKMTVPLHIL----- 298 (406)
Q Consensus 239 ~i~i~d~~~~--~~~~~~~------~~~~~v~~i~~~---~~---~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~----- 298 (406)
.|.+||+.+. +.++++. ...+.+..+.+. |. +..++..+. ..+.|.|+|+.+++. .+..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~s-wRv~~~~~~ 202 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDS-WNVTHPTFK 202 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEE-EEEECGGGS
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcE-EEEccCCCc
Confidence 3455666665 5544431 123557777777 32 122333333 466899999987542 1111
Q ss_pred ---------cCC----CCCeEEEEEcCC----CCCEEEEEeCCCcEEEEeCCCC--CcccccccccCCCCeeEEEecCCC
Q 015484 299 ---------SSH----TEEVFQVEWDPN----HETVLASSADDRRLMVWDLNRI--GDEQLELDAEDGPPELLFSHGGHK 359 (406)
Q Consensus 299 ---------~~h----~~~v~~i~~~p~----~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~h~ 359 (406)
.+. ...|..|+.+|+ ++.+....-... ++|.+.+. .... .....+.+-. .+..
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~--~ly~V~T~~L~~~~-----~~~~v~~~G~-kg~~ 274 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI--KVYSVNTKELKQKG-----GKLNPELLGN-RGKY 274 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS--EEEEEEHHHHSSTT-----CCCCCEEEEE-CCTT
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC--cEEEEEHHHhhCcc-----hhhceEEeee-cCCC
Confidence 010 246888899987 554333333222 33433321 0000 0111122221 1212
Q ss_pred CCeeeEEeC-CCCCcEEEEEeCCCcEEEEeCCC
Q 015484 360 AKISDFSWN-KNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 360 ~~v~~~~~s-~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
..-..++.. .+|. ++++--+.+.|..|+..+
T Consensus 275 s~~~~~~~D~~~G~-ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 275 NDAIALAYDPKTKV-IFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp CCEEEEEECTTTCE-EEEEESSSSEEEEEETTS
T ss_pred CCcceEEEeCCCCe-EEEEeccCCeEEEEeCCC
Confidence 233456675 5666 677777888999999886
No 362
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=64.13 E-value=1.1e+02 Score=29.96 Aligned_cols=160 Identities=14% Similarity=0.083 Sum_probs=80.1
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCcee-e-----eC---CCCCeeEEEecCCCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLR-L-----KG---HDKEGYGLSWSPFKEGYLV 183 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~-----~~---h~~~v~~l~~~~~~~~~l~ 183 (406)
+-.+.|.+|.++|.++..+.++...|.|....-.. . .+.++.. + .. ....+.+|++.|...+.++
T Consensus 18 g~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~DgG--~----tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~ 91 (763)
T 3a0f_A 18 SGGGFISGLVAHPTEKDLIYARTDIGGTYRWNAAK--W----EWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLY 91 (763)
T ss_dssp CBCSCEEEEEECSSSTTCEEEEESSSCEEEEETTT--T----EEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEE
T ss_pred cCCCceeEEEeCCCCCCEEEEEeccCcEEEECCCC--C----CeeECccCccccccCCCcccccceeEEEECCCCCCEEE
Confidence 45679999999998877777777666554433221 1 1111111 1 00 2245889999986544554
Q ss_pred EecCC-----CeEEEEeCCCccCCceeeeeee-eec--c-Cc--cEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccc
Q 015484 184 SGSHD-----NKICLWDVSALAQDKVIDAMHV-YEA--H-ES--VVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ 252 (406)
Q Consensus 184 s~~~d-----g~i~iwd~~~~~~~~~~~~~~~-~~~--~-~~--~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~ 252 (406)
.+... ....||.-..+.. ..+.+.. ... . .. ....++++|.+...+.+++..+.|. .....++.-.
T Consensus 92 ~~~g~~~~~~~~~~i~~S~DgG~--TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~-~S~DgG~TW~ 168 (763)
T 3a0f_A 92 LAQGDYVQWDPWAAFLVSDDRGK--TFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLW-RSTDRAQTWS 168 (763)
T ss_dssp EEECSCTTTCSCCEEEEESSTTS--SCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEE-EESSTTSSCE
T ss_pred EEecccccCCCCceEEEECCCCC--CceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEE-EECCCCcCcc
Confidence 43321 1234444333222 1221111 000 0 11 1246888886666666666554433 2333344322
Q ss_pred cccc------cCCCeeEEEecCCCCcEEEEEeCCC
Q 015484 253 RVKA------HEKEVNYLSFNPYNEWVLATASSDT 281 (406)
Q Consensus 253 ~~~~------~~~~v~~i~~~~~~~~~l~~~~~dg 281 (406)
.+.. ....+..|.++|.....++.+..++
T Consensus 169 ~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 169 RMNQLPDSSTYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp ECTTSCCCSCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred ccccCcccCCCccceEEEEECCCCCCEEEEEEeCC
Confidence 2211 1134778899887644455555554
No 363
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=59.56 E-value=1.2e+02 Score=28.74 Aligned_cols=58 Identities=14% Similarity=0.215 Sum_probs=35.1
Q ss_pred eeEEEecCCCCcEEEEEeCC------------CcEEEEeCCCCCCCcEEecC-CCCCeEEEEEcCCCCCEEEE
Q 015484 261 VNYLSFNPYNEWVLATASSD------------TTVALFDMRKMTVPLHILSS-HTEEVFQVEWDPNHETVLAS 320 (406)
Q Consensus 261 v~~i~~~~~~~~~l~~~~~d------------g~i~vwd~~~~~~~~~~~~~-h~~~v~~i~~~p~~~~~l~s 320 (406)
.-.|.|+|.|. +++.-..+ ..+.+.+..+++. ...+.. ....++.++|+|+++++++.
T Consensus 478 PDNL~fd~~G~-LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~-~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPATGEI-RRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCC-EEEEECCCCCCSGGGTTTCSCEEEEECTTTCCE-EEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCC-EEEEecCCCcccccccccccceEEEEeCCCCeE-EEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 35689999998 55543322 1345555554332 233333 34679999999999876554
No 364
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=58.49 E-value=99 Score=27.40 Aligned_cols=153 Identities=10% Similarity=0.163 Sum_probs=79.8
Q ss_pred CccEEEEEee---CC--C-CCE-EEEEecCCcEEEEECCCCccccccc----cc--------------CCCeeEEEecCC
Q 015484 215 ESVVEDVSWH---LK--N-ENL-FGSAGDDCQLMIWDLRTNQTQQRVK----AH--------------EKEVNYLSFNPY 269 (406)
Q Consensus 215 ~~~i~~i~~~---p~--~-~~~-l~~~~~dg~i~i~d~~~~~~~~~~~----~~--------------~~~v~~i~~~~~ 269 (406)
.+.+.++.+. |. . ..+ .++=...+.|.++|+.+++..+.+. .. ...+..|+.+|+
T Consensus 151 ~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~ 230 (381)
T 3q6k_A 151 PTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDR 230 (381)
T ss_dssp GGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCC
T ss_pred CCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCC
Confidence 4567888877 21 1 223 3333456789999999876543221 10 246788999987
Q ss_pred ----CCcEEEEEeCCCcEEEEe---CCCC--CCCcEEecCC--CCCeEEEEEc-CCCCCEEEEEeCCCcEEEEeCCC-CC
Q 015484 270 ----NEWVLATASSDTTVALFD---MRKM--TVPLHILSSH--TEEVFQVEWD-PNHETVLASSADDRRLMVWDLNR-IG 336 (406)
Q Consensus 270 ----~~~~l~~~~~dg~i~vwd---~~~~--~~~~~~~~~h--~~~v~~i~~~-p~~~~~l~s~~~dg~i~iwd~~~-~~ 336 (406)
++.+....-....+.-.. +++. ...+..+-.. ...-..++.. .+| .++++--..+.|..|+... .-
T Consensus 231 ~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G-~ly~~~~~~~aI~~w~~~~~~~ 309 (381)
T 3q6k_A 231 DSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTK-VIFFAEANTKQVSCWNTQKMPL 309 (381)
T ss_dssp CTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTC-EEEEEESSSSEEEEEETTSCSB
T ss_pred cCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCC-eEEEEeccCCeEEEEeCCCCcc
Confidence 563333333322333332 2221 1112222111 1334456675 455 4677777888999999864 11
Q ss_pred cccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEE
Q 015484 337 DEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSV 378 (406)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~ 378 (406)
... ....+.. ...-..+.++.+.++|. +.+..
T Consensus 310 ~~~--------n~~~l~~-d~~l~~pd~~~i~~~g~-Lwv~s 341 (381)
T 3q6k_A 310 RMK--------NTDVVYT-SSRFVFGTDISVDSKGG-LWFMS 341 (381)
T ss_dssp CGG--------GEEEEEE-CTTCCSEEEEEECTTSC-EEEEE
T ss_pred ccC--------ceEEEEE-CCCccccCeEEECCCCe-EEEEE
Confidence 100 0122222 22334577788777776 45554
No 365
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=49.66 E-value=1.1e+02 Score=25.49 Aligned_cols=184 Identities=12% Similarity=0.112 Sum_probs=101.3
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
..|..|+..... .++. . ||.|+.|-....... ..|... ...|..|+.... ..+.-. +|.|..|-
T Consensus 63 ~~i~~ia~G~~h--s~~l-~-~G~v~~wG~n~~Gql----g~P~~~----~~~v~~ia~G~~---hs~al~-~G~v~~wG 126 (282)
T 3qhy_B 63 SGVDAIAAGNYH--SLAL-K-DGEVIAWGGNEDGQT----TVPAEA----RSGVDAIAAGAW---ASYALK-DGKVIAWG 126 (282)
T ss_dssp SCCCEEEECSSE--EEEE-E-TTEEEEEECCTTSTT----CCCGGG----SSSEEEEEEETT---EEEEEE-TTEEEEEE
T ss_pred CCEEEEEeCCCE--EEEE-E-CCEEEEeeCCCCCCC----CCCccc----CCCeEEEECcCC---EEEEEe-CCeEEEec
Confidence 357777765433 3444 4 899999987753221 111111 236777766432 444445 89999998
Q ss_pred CCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEE
Q 015484 196 VSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLA 275 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~ 275 (406)
.+....... .......|..|+... ...+ .-. ||.|..|-......+..-......|..|+..... .++
T Consensus 127 ~n~~gqlg~------~~~~~~~i~~i~~G~--~~~~-~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h--s~a 194 (282)
T 3qhy_B 127 DDSDGQTTV------PAEAQSGVTALDGGV--YTAL-AVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH--SLA 194 (282)
T ss_dssp CCTTSTTSC------CGGGGSSEEEEEECS--SEEE-EEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE--EEE
T ss_pred CCCCCcCCC------CccCCCCeEEEEccc--CEEE-EEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCE--EEE
Confidence 765332110 011234577776542 2333 334 7999999866533322211224567777765433 344
Q ss_pred EEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 276 TASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 276 ~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
. .||.|+.|-.....+ +-.-......|..|+..... .++.. ||.|..|-...
T Consensus 195 l--~~G~v~~wG~n~~gq-lg~p~~~~~~v~~i~~G~~h--~~al~--~g~v~~wG~n~ 246 (282)
T 3qhy_B 195 L--KDGKVIAWGDNRYKQ-TTVPTEALSGVSAIASGEWY--SLALK--NGKVIAWGSSR 246 (282)
T ss_dssp E--ETTEEEEEECCTTST-TCCCGGGGSSCCEEEECSSC--EEEEE--TTEEEEESTTC
T ss_pred E--ECCeEEEEECCCCCC-CCCCcccCCCceEEEcCCCE--EEEEE--CCEEEEecCCC
Confidence 4 589999997654332 11111112357777765543 23333 99999997665
No 366
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=48.74 E-value=2e+02 Score=28.14 Aligned_cols=155 Identities=12% Similarity=0.033 Sum_probs=76.4
Q ss_pred CCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeee-ee----c----cCccEEEEEeeCCCCCEEEEEe
Q 015484 165 HDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHV-YE----A----HESVVEDVSWHLKNENLFGSAG 235 (406)
Q Consensus 165 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~----~----~~~~i~~i~~~p~~~~~l~~~~ 235 (406)
-.+.|.+|+++|.+...+..+...|.|... ..+. +....+.. .. . ....+.+|+++|.+...+.++.
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S--~DgG--~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~ 94 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRW--NAAK--WEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQ 94 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEE--ETTT--TEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEE
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEE--CCCC--CCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEe
Confidence 456899999999887677777766655433 2221 22222211 10 0 1245899999985545444433
Q ss_pred cC------CcEEEEECCCCccccccccc-------C--CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC
Q 015484 236 DD------CQLMIWDLRTNQTQQRVKAH-------E--KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS 300 (406)
Q Consensus 236 ~d------g~i~i~d~~~~~~~~~~~~~-------~--~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 300 (406)
.. +...+.....++.-..+... . .....++++|.....+.++...+.|. --......-..+..
T Consensus 95 g~~~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~--~S~DgG~TW~~~~~ 172 (763)
T 3a0f_A 95 GDYVQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLW--RSTDRAQTWSRMNQ 172 (763)
T ss_dssp CSCTTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEE--EESSTTSSCEECTT
T ss_pred cccccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEE--EECCCCcCcccccc
Confidence 21 22223334444443222110 1 11246888886544555555544333 22222111111111
Q ss_pred ------CCCCeEEEEEcCCCCCEEEEEeCCC
Q 015484 301 ------HTEEVFQVEWDPNHETVLASSADDR 325 (406)
Q Consensus 301 ------h~~~v~~i~~~p~~~~~l~s~~~dg 325 (406)
....+..|.++|..+..++.+..++
T Consensus 173 ~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 173 LPDSSTYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp SCCCSCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred CcccCCCccceEEEEECCCCCCEEEEEEeCC
Confidence 1135788999987543355555554
No 367
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=41.60 E-value=45 Score=34.71 Aligned_cols=34 Identities=12% Similarity=0.138 Sum_probs=26.9
Q ss_pred CeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 361 KISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 361 ~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
.+.+++..++.. ++++-+.|+.+|||++.++.+-
T Consensus 239 ~~vs~~~~~~~~-~lftL~~D~~LRiWsl~t~~~v 272 (1139)
T 4fhn_B 239 TIISMIFLSTYN-VLVMLSLDYKLKVLDLSTNQCV 272 (1139)
T ss_dssp CBSCCEEETTTT-EEEEEBTTCEEEEEETTTTEEE
T ss_pred eeEEeeccCCcc-EEEEEeCCCEEEEEECCCCCeE
Confidence 455666667777 6889999999999999998653
No 368
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=36.52 E-value=1.2e+02 Score=28.69 Aligned_cols=62 Identities=11% Similarity=0.180 Sum_probs=37.7
Q ss_pred CeeEEEecCCCCcEEEEEeC------------CCcEEEEeCCCCCCCcEEecC-CCCCeEEEEEcCCCCCEEEEEeC
Q 015484 260 EVNYLSFNPYNEWVLATASS------------DTTVALFDMRKMTVPLHILSS-HTEEVFQVEWDPNHETVLASSAD 323 (406)
Q Consensus 260 ~v~~i~~~~~~~~~l~~~~~------------dg~i~vwd~~~~~~~~~~~~~-h~~~v~~i~~~p~~~~~l~s~~~ 323 (406)
....|.|+++|. +.++... ...+..++..+++. ...+.. ....++.++|+|+++.|+++.-.
T Consensus 477 sPDnL~fd~~G~-LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel-~~fl~~P~~aEpnGiafSPD~ktLfV~vQH 551 (592)
T 4a9v_A 477 SPDGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPATGEI-RRFMVGPIGCEVTGISFSPDQKTLFVGIQH 551 (592)
T ss_dssp CEEEEEECTTCC-EEEEECCCCCCSGGGTTCCSCEEEEECTTTCCE-EEEEECCTTCEEEEEEECTTSSEEEEEEES
T ss_pred CCCceEECCCCC-EEEEeCCCcCccccccccCCceEEEEeCCCCeE-EEEEeCCCCccccCCEECCCCCEEEEEEeC
Confidence 456799999998 4442221 11466666655442 222332 23568999999999876665543
No 369
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=34.57 E-value=27 Score=36.31 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=28.7
Q ss_pred cEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc
Q 015484 217 VVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV 254 (406)
Q Consensus 217 ~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 254 (406)
.+.+++..+ +..++++.+.|+++|+|++.+++++.+.
T Consensus 239 ~~vs~~~~~-~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEET-TTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccC-CccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 344555554 6788889999999999999999876554
No 370
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=33.12 E-value=45 Score=32.39 Aligned_cols=35 Identities=26% Similarity=0.422 Sum_probs=27.4
Q ss_pred cEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc
Q 015484 217 VVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV 254 (406)
Q Consensus 217 ~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 254 (406)
.|.++.+ +..++++-+.|.++|+|++++++++...
T Consensus 223 ~Is~~~~---~~~fLftL~~Dh~LRiWsL~t~~lv~t~ 257 (729)
T 3f7f_A 223 VISCKLF---HERYLIVLTQNCHLKIWDLTSFTLIQDY 257 (729)
T ss_dssp EEEEEEE---TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEecc---CCcEEEEEEcCCeEEEEEcCCCceEEee
Confidence 4555544 3678889999999999999999876554
No 371
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=32.82 E-value=2.5e+02 Score=24.57 Aligned_cols=209 Identities=11% Similarity=0.099 Sum_probs=106.3
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCce---eeeC-CCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDL---RLKG-HDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
.+..++.+.-. ...+.-+.+|.|+.|-.......-.+...... .+.. ....|..|+- +....+....+|.|.
T Consensus 106 ~~~~v~i~~G~-~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~---G~~hs~alt~~G~v~ 181 (389)
T 3kci_A 106 FIKKVAVNSGG-KHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA---GGAHSACVTAAGDLY 181 (389)
T ss_dssp CEEEEEECTTC-SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE---CSSEEEEEETTSCEE
T ss_pred ceeEEEECcCC-CeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEe---CcCeEEEEeCCCeEE
Confidence 34445555544 34555578999999976553221111111111 0111 1224555554 333566667899999
Q ss_pred EEeCCCccC------CceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccc-----------cccc
Q 015484 193 LWDVSALAQ------DKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ-----------QRVK 255 (406)
Q Consensus 193 iwd~~~~~~------~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~-----------~~~~ 255 (406)
.|-.+.... .....+..........|..++... +....++...+|.|..|-......+ ..+.
T Consensus 182 ~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~-g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 260 (389)
T 3kci_A 182 TWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGS-GDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKID 260 (389)
T ss_dssp EEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECC-SSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECG
T ss_pred EeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcC-CCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEec
Confidence 997654211 111111111111233566666542 2355566788999999975432111 0111
Q ss_pred -ccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC-----------CcEEecCCCCCeEEEEEcCCCCCEEEEEeC
Q 015484 256 -AHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV-----------PLHILSSHTEEVFQVEWDPNHETVLASSAD 323 (406)
Q Consensus 256 -~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-----------~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~ 323 (406)
.....|..|+.... ..++-..+|.|+.|-.....+ |..........|..|+.... ..+....
T Consensus 261 ~~~~~~v~~v~~G~~---hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~---h~~al~~ 334 (389)
T 3kci_A 261 SLTGLGVVKVECGSQ---FSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSL---HCVCCTE 334 (389)
T ss_dssp GGTTSCEEEEEEETT---EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSS---EEEEEET
T ss_pred ccCCCcEEEEeCCCC---EEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccC---eEEEECC
Confidence 11224666655432 444457789999996543111 11111112245777765433 3455678
Q ss_pred CCcEEEEeCCCCC
Q 015484 324 DRRLMVWDLNRIG 336 (406)
Q Consensus 324 dg~i~iwd~~~~~ 336 (406)
||.|..|=....+
T Consensus 335 ~G~v~~wG~n~~G 347 (389)
T 3kci_A 335 DGEVYTWGDNDEG 347 (389)
T ss_dssp TCCEEEEECCTTS
T ss_pred CCCEEEeeCCCCC
Confidence 9999999876543
No 372
>3f6k_A Sortilin; protein sorting receptor, 10-bladed beta-propeller, Cys-rich ssortilin, sortilin VPS10P-D, protein-peptide complex, DEVE protein; HET: NAG BMA PGE; 2.00A {Homo sapiens}
Probab=31.28 E-value=2.9e+02 Score=26.75 Aligned_cols=65 Identities=9% Similarity=0.042 Sum_probs=32.8
Q ss_pred EEEEEeeCCCC-CEEEEEec-----CCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcE
Q 015484 218 VEDVSWHLKNE-NLFGSAGD-----DCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTV 283 (406)
Q Consensus 218 i~~i~~~p~~~-~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i 283 (406)
+..|+.+|.++ .+++++.. .+.| +.....|+....+.....+...+.++|..+..|++++.++.|
T Consensus 92 ~~~IavdP~dp~~vyvag~~~~~~~~g~v-~rS~DgG~TW~~~~~p~~~~~~l~~~P~~~~~l~a~~~~~gl 162 (685)
T 3f6k_A 92 EFGMAIGPENSGKVVLTAEVSGGSRGGRI-FRSSDFAKNFVQTDLPFHPLTQMMYSPQNSDYLLALSTENGL 162 (685)
T ss_dssp GGCEEECSTTCCCEEEEECCCTTCSSCEE-EEESSTTSSCEEEECSSCBSSCCEEETTEEEEEEEEBTTCCE
T ss_pred eeEEEECCCCCCEEEEEEeccCCCCCceE-EEECCCCceeEeccCCCCCceEEEEecCCCCEEEEEECCCCE
Confidence 46788888665 45555531 3333 334444554333321111223577888765455555444433
No 373
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=29.37 E-value=4e+02 Score=25.85 Aligned_cols=200 Identities=12% Similarity=0.143 Sum_probs=95.8
Q ss_pred eEEE-EcCCCCcEEEEEeCCC----eEEEEeCCCccccccCCCCCceeeeCCC-----CCeeEEEecCCCCCeEEEe---
Q 015484 119 NRAR-CMPQKPNLVGTKTSSC----EVYVFDCAKQAEKQQDDCDPDLRLKGHD-----KEGYGLSWSPFKEGYLVSG--- 185 (406)
Q Consensus 119 ~~i~-~~p~~~~~l~~~~~dg----~i~iw~~~~~~~~~~~~~~~~~~~~~h~-----~~v~~l~~~~~~~~~l~s~--- 185 (406)
..+. ++|++..++++-+..| .++++|+.+...... ...+. ... .....++|...+. ++++.
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~~~----~k~~~~~~~~~~~~~W~d~~~-~~~~~~~~ 205 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFEPI----TNSGKLLEGKFTYPTWINKDT-IIFNLVLH 205 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSCCB----CTTCCBCCEETCCEEEEETTE-EEECCCCS
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccccc----cccccccccccceeeEECCCE-EEEEeCCC
Confidence 3344 7888866665555544 699999988543211 00000 000 0113457864333 44432
Q ss_pred -------cCCCeEEEEeCCCccCCceeeeeeeeeccCccE-EEEEeeCCCCC----EEEEEecC---CcEEEEECCCCcc
Q 015484 186 -------SHDNKICLWDVSALAQDKVIDAMHVYEAHESVV-EDVSWHLKNEN----LFGSAGDD---CQLMIWDLRTNQT 250 (406)
Q Consensus 186 -------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i-~~i~~~p~~~~----~l~~~~~d---g~i~i~d~~~~~~ 250 (406)
+....|+.|.+-+..... ...+......+ .....+++... ++++.+.+ ..+.+.|......
T Consensus 206 ~~~~~~~~~~~~v~~~~~Gt~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 281 (711)
T 4hvt_A 206 KNEITSSLYPNSLYIWKRGESIEKA----KKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNL 281 (711)
T ss_dssp TTCBCTTSSBCEEEEEETTSCGGGC----EEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSC
T ss_pred CCCcCcCCCCCEEEEEECCCChHHC----eEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCC
Confidence 123568888877643221 12233222222 22333443332 34444322 3456666553211
Q ss_pred -cccccccCCCeeEEEecCCCCcEEEEE----------eCCCcEEEEeCCCCC------CCcEE-ecC-CCCCeEEEEEc
Q 015484 251 -QQRVKAHEKEVNYLSFNPYNEWVLATA----------SSDTTVALFDMRKMT------VPLHI-LSS-HTEEVFQVEWD 311 (406)
Q Consensus 251 -~~~~~~~~~~v~~i~~~~~~~~~l~~~----------~~dg~i~vwd~~~~~------~~~~~-~~~-h~~~v~~i~~~ 311 (406)
...+...... .+..+..+. +++.. ...+.|...|+.... ..... +.. ....+..+.|.
T Consensus 282 ~~~~l~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 358 (711)
T 4hvt_A 282 KLQKINMPSDA--TLQGSFKEY-VFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTT 358 (711)
T ss_dssp EEEECCSCTTC--EEEEEETTE-EEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEEC
T ss_pred cceEeecCCcc--eEeeeECCE-EEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEE
Confidence 1222212211 123334444 44422 246789999987631 12333 322 23457788888
Q ss_pred CCCCCEEEEEeCCCc--EEEEeCC
Q 015484 312 PNHETVLASSADDRR--LMVWDLN 333 (406)
Q Consensus 312 p~~~~~l~s~~~dg~--i~iwd~~ 333 (406)
.+ .++++...++. +.++++.
T Consensus 359 ~~--~l~~~~~~~~~~~l~~~~~~ 380 (711)
T 4hvt_A 359 KD--RVFLATYDNVVAKVVTFTLE 380 (711)
T ss_dssp SS--CEEEEEEETTEEEEEEECEE
T ss_pred CC--EEEEEEEECCEEEEEEEECC
Confidence 75 47888888876 5555543
No 374
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=24.70 E-value=3.6e+02 Score=23.78 Aligned_cols=204 Identities=7% Similarity=-0.022 Sum_probs=102.4
Q ss_pred CeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCC--------ceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCc
Q 015484 168 EGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQD--------KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQ 239 (406)
Q Consensus 168 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~ 239 (406)
.|..|+. +..+.+.-..||.|..|-.+..... ....+.. .. ....|..|+. +....++...||.
T Consensus 76 ~v~~va~---G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~-v~-~~~~i~~va~---G~~hs~al~~~G~ 147 (423)
T 3mvd_K 76 DAVDISA---GGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDL-ID-LPGKALCISA---GDSHSACLLEDGR 147 (423)
T ss_dssp SEEEEEE---CSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEE-CC-CSSCEEEEEE---CSSEEEEEETTSC
T ss_pred CceEEee---CCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeE-Ec-CCCCEEEEEc---CcCeEEEEeCCCe
Confidence 4555554 3336666778999999976542210 0111111 11 2235666664 3455556788999
Q ss_pred EEEEEC--CC-Cccc---------ccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC---------------
Q 015484 240 LMIWDL--RT-NQTQ---------QRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT--------------- 292 (406)
Q Consensus 240 i~i~d~--~~-~~~~---------~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~--------------- 292 (406)
|+.|-. .. ++.- .........|..|+.... ..+.-..+|.|+.|-.....
T Consensus 148 v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~---hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~ 224 (423)
T 3mvd_K 148 VFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGAD---HLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGR 224 (423)
T ss_dssp EEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECSS---EEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCST
T ss_pred EEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCCC---eEEEEecCCeEEEeeCCcCCccCCCcccccccccc
Confidence 999985 22 2110 000112345666665432 45556788999999643221
Q ss_pred -------CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeE
Q 015484 293 -------VPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDF 365 (406)
Q Consensus 293 -------~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 365 (406)
.|..........|..|+..... .++.-..+|.|..|-....++.-...........++.. ....|..|
T Consensus 225 ~~~~~~~~p~~v~~~~~~~v~~i~~g~~~--~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~---~~~~v~~i 299 (423)
T 3mvd_K 225 RGKRDLLRPTQLIITRAKPFEAIWATNYC--TFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKT---ELKDIRHI 299 (423)
T ss_dssp TTTTTTSSCEEECCTTCCCEEEEEEETTE--EEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEE---CCCSEEEE
T ss_pred cccccccCCeEEeecCCccEEEEEECCcE--EEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEc---CCCCeEEE
Confidence 1122222223456666654332 24333689999999766543321100000000011111 12356666
Q ss_pred EeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 366 SWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 366 ~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
+.-.. ..+.-..||.|..|=-.
T Consensus 300 a~G~~---ht~alt~~G~v~~wG~n 321 (423)
T 3mvd_K 300 AGGQH---HTVILTTDLKCSVVGRP 321 (423)
T ss_dssp EECSS---EEEEEETTCCEEEEECC
T ss_pred EcccC---eEEEEeCCCcEEEEECC
Confidence 65443 33444678889988654
No 375
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=23.09 E-value=3.9e+02 Score=23.53 Aligned_cols=256 Identities=12% Similarity=0.136 Sum_probs=125.3
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCcee---ee-CCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLR---LK-GHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~---~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
.|..|+.-.. +.+|....++.|+.|-.......-.+....... +. .....|..|+- +..+.+.-..+|.|.
T Consensus 69 ~i~~va~G~~--ht~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~---G~~h~~alt~~G~v~ 143 (406)
T 4d9s_A 69 QIVSVTCGAD--HTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIAC---GDSHCLAVTMEGEVQ 143 (406)
T ss_dssp CEEEEEECSS--EEEEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE---CSSEEEEEETTSCEE
T ss_pred CEEEEEeCcc--eEEEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEE---ChhheEEEcCCCcEE
Confidence 5777766543 234443444599999765532211111111100 11 12235666665 333666667899999
Q ss_pred EEeCCCccC------CceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccc-----------ccc-
Q 015484 193 LWDVSALAQ------DKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ-----------QRV- 254 (406)
Q Consensus 193 iwd~~~~~~------~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~-----------~~~- 254 (406)
.|-.+.... .....+..........|..|+. +....++...+|.|+.|-......+ ..+
T Consensus 144 ~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~---G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~ 220 (406)
T 4d9s_A 144 SWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAA---GAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVT 220 (406)
T ss_dssp EEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEE---CSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECC
T ss_pred EeCCCCCccCCCCCCCCcccceEecccCCCcEEEEec---CCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEec
Confidence 997654221 1111111111111235666664 3455666788999999975432111 001
Q ss_pred cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC-----------CcEEecCCCCCeEEEEEcCCCCCEEEEEeC
Q 015484 255 KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV-----------PLHILSSHTEEVFQVEWDPNHETVLASSAD 323 (406)
Q Consensus 255 ~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-----------~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~ 323 (406)
......|..++.... ..+.-..+|.|+.|-.....+ |..........|..|+-... ..+.-..
T Consensus 221 ~~~~~~i~~va~G~~---ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~---hs~alt~ 294 (406)
T 4d9s_A 221 STGGEKMSMVACGWR---HTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWR---HTMALTS 294 (406)
T ss_dssp CSTTCCEEEEEECSS---EEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS---EEEEEET
T ss_pred ccCCceEEEEEECCC---cEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCC---EEEEEcC
Confidence 111234555555322 455556789999997543221 01111112234666665433 3455568
Q ss_pred CCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 324 DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 324 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
||.|..|=....++.-..... ....+..........|..++.-.. ..+....||.|..|=-..
T Consensus 295 ~G~v~~wG~n~~GqLG~g~~~--~~~~p~~v~~~~~~~v~~va~G~~---hs~alt~~G~v~~wG~n~ 357 (406)
T 4d9s_A 295 DGKLYGWGWNKFGQVGVGNNL--DQCSPVQVRFPDDQKVVQVSCGWR---HTLAVTERNNVFAWGRGT 357 (406)
T ss_dssp TSCEEEEECCTTSTTCSSSSS--CEEEEEEECCGGGCCEEEEEECSS---EEEEEETTSCEEEEECCT
T ss_pred CCeEEEeeCCCCCCCCCCCCC--CCccCEEEeccCCCcEEEEEeCCC---eEEEEeCCCCEEEecCCC
Confidence 999999986654332111100 000111111112235666665443 334446789999996543
No 376
>4b4p_A FEDF, F18 fimbrial adhesin AC; cell adhesion, fimbriae, bacterial adhesins, protein-carbohy interactions, ABH blood group binding, STEC; 1.80A {Escherichia coli k-12} PDB: 4b4q_A* 4b4r_A*
Probab=20.53 E-value=1.1e+02 Score=20.87 Aligned_cols=56 Identities=13% Similarity=0.327 Sum_probs=34.6
Q ss_pred CCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeC
Q 015484 167 KEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHL 225 (406)
Q Consensus 167 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p 225 (406)
..|+.+.|-|...+.| ++ ..|+|.+|.-... ....+.+...+....+.|+.-.|-.
T Consensus 32 hqiynvnfipsssgtl-tc-qagtilvwkngre-tqyalecrvsihhssgsinesqwgq 87 (151)
T 4b4p_A 32 HQIYNVNFIPSSSGTL-TC-QAGTILVWKNGRE-TQYALECRVSIHHSSGSINESQWGQ 87 (151)
T ss_dssp EEEEEEEECCSSCEEE-EE-EECEEEEEETTEE-EEEECEEEEEEEETTSCEEECCCBS
T ss_pred eeeeeeeeeecCCCcE-EE-ccceEEEEeCCce-eeEeEEEEEEEeecCCccChhHhcc
Confidence 3588899999776343 44 4589999974322 2233444444444456787777764
No 377
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=20.03 E-value=3.7e+02 Score=25.37 Aligned_cols=65 Identities=14% Similarity=0.162 Sum_probs=40.4
Q ss_pred ccEEEEEeeCCCCCEEEEEec------------CCcEEEEECCCCccccccccc-CCCeeEEEecCCCCcEEEEEeCCC
Q 015484 216 SVVEDVSWHLKNENLFGSAGD------------DCQLMIWDLRTNQTQQRVKAH-EKEVNYLSFNPYNEWVLATASSDT 281 (406)
Q Consensus 216 ~~i~~i~~~p~~~~~l~~~~~------------dg~i~i~d~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~l~~~~~dg 281 (406)
.....|.|.+ ++.+.++... ...+..++..+++....+... ...++.++|+|+++.+++....-|
T Consensus 476 nsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQHPG 553 (592)
T 4a9v_A 476 NSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQHPG 553 (592)
T ss_dssp CCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEESTT
T ss_pred CCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEeCCC
Confidence 3467789998 5666653221 125677777777654444322 356899999999995555544333
Done!