BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015489
         (406 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WK8|A Chain A, Structure Of Holo Form Of Vibrio Cholerae Cqsa
 pdb|2WK8|B Chain B, Structure Of Holo Form Of Vibrio Cholerae Cqsa
 pdb|2WK9|A Chain A, Structure Of Plp_thr Aldimine Form Of Vibrio Cholerae Cqsa
 pdb|2WK9|B Chain B, Structure Of Plp_thr Aldimine Form Of Vibrio Cholerae Cqsa
 pdb|2WKA|A Chain A, Structure Of Plp_thr_decanoyl-Coa Aldimine Form Of Vibrio
           Cholerae Cqsa
 pdb|2WKA|B Chain B, Structure Of Plp_thr_decanoyl-Coa Aldimine Form Of Vibrio
           Cholerae Cqsa
          Length = 389

 Score = 32.0 bits (71), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 87  QNNTKIWIPTNPRGAERLAPGIIESQSDLYPRRLWGSPDKDLPIRPKYLVTFTVGFD 143
           Q+N  + +  +P    RLA  ++E Q  L+    +   D D P+  K L  FT GFD
Sbjct: 45  QSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFT-GFD 100


>pdb|3HQT|A Chain A, Plp-Dependent Acyl-Coa Transferase Cqsa
 pdb|3HQT|B Chain B, Plp-Dependent Acyl-Coa Transferase Cqsa
 pdb|3KKI|A Chain A, Plp-Dependent Acyl-Coa Transferase Cqsa
 pdb|3KKI|B Chain B, Plp-Dependent Acyl-Coa Transferase Cqsa
          Length = 409

 Score = 32.0 bits (71), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 87  QNNTKIWIPTNPRGAERLAPGIIESQSDLYPRRLWGSPDKDLPIRPKYLVTFTVGFD 143
           Q+N  + +  +P    RLA  ++E Q  L+    +   D D P+  K L  FT GFD
Sbjct: 65  QSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFT-GFD 120


>pdb|2WK7|A Chain A, Structure Of Apo Form Of Vibrio Cholerae Cqsa
 pdb|2WK7|B Chain B, Structure Of Apo Form Of Vibrio Cholerae Cqsa
          Length = 393

 Score = 32.0 bits (71), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 87  QNNTKIWIPTNPRGAERLAPGIIESQSDLYPRRLWGSPDKDLPIRPKYLVTFTVGFD 143
           Q+N  + +  +P    RLA  ++E Q  L+    +   D D P+  K L  FT GFD
Sbjct: 45  QSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFT-GFD 100


>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
           Synthetase Complexed With Trna(Val) And Valyl-Adenylate
           Analogue
 pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
           Synthetase Complexed With Trna(Val) And Valyl-Adenylate
           Analogue
 pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
           Synthetase Complexed With Trna(Val) And Valyl-Adenylate
           Analogue
 pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
           Synthetase Complexed With Trna(Val) And Valyl-Adenylate
           Analogue
 pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
           Valyl-Trna Synthetase
 pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
           Valyl-Trna Synthetase
          Length = 862

 Score = 29.6 bits (65), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 204 IVASYDYIFIWDEDLGVE--NFNGEEYIKLVRKHGLEISQPG 243
           +V  YD +F+W   + V   +F GE   K V  HGL + + G
Sbjct: 485 LVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKG 526


>pdb|1R88|A Chain A, The Crystal Structure Of Mycobacterium Tuberculosis Mpt51
           (Fbpc1)
 pdb|1R88|B Chain B, The Crystal Structure Of Mycobacterium Tuberculosis Mpt51
           (Fbpc1)
          Length = 280

 Score = 28.1 bits (61), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 9/77 (11%)

Query: 38  AISISKMNLPSSLFPTSDLNYVEDKYTGISTQALLNA-------WSTLQTNRGFYSQNNT 90
           A S+S    PS+      +     ++ G+ T  +  A       W     +    +QNNT
Sbjct: 140 AGSMSGFLYPSNTTTNGAIAAGMQQFGGVDTNGMWGAPQLGRWKWHDPWVHASLLAQNNT 199

Query: 91  KIWI--PTNPRGAERLA 105
           ++W+  PTNP  ++  A
Sbjct: 200 RVWVWSPTNPGASDPAA 216


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,321,595
Number of Sequences: 62578
Number of extensions: 602928
Number of successful extensions: 1174
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1173
Number of HSP's gapped (non-prelim): 7
length of query: 406
length of database: 14,973,337
effective HSP length: 101
effective length of query: 305
effective length of database: 8,652,959
effective search space: 2639152495
effective search space used: 2639152495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)