Query 015489
Match_columns 406
No_of_seqs 152 out of 174
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 06:47:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015489.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015489hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05212 DUF707: Protein of un 100.0 2E-130 4E-135 949.2 26.6 293 92-384 1-294 (294)
2 cd02510 pp-GalNAc-T pp-GalNAc- 94.4 1.1 2.3E-05 42.8 13.3 171 206-387 82-263 (299)
3 cd04186 GT_2_like_c Subfamily 94.2 0.11 2.4E-06 43.0 5.4 91 207-341 74-165 (166)
4 TIGR01556 rhamnosyltran L-rham 94.1 0.23 5.1E-06 46.6 8.2 128 206-342 72-202 (281)
5 cd04185 GT_2_like_b Subfamily 93.6 0.25 5.4E-06 43.3 6.9 100 206-345 78-177 (202)
6 cd02526 GT2_RfbF_like RfbF is 93.4 0.27 5.8E-06 44.0 6.8 123 207-341 75-204 (237)
7 PF13641 Glyco_tranf_2_3: Glyc 90.7 0.67 1.4E-05 41.3 6.2 127 206-343 85-212 (228)
8 cd02520 Glucosylceramide_synth 89.4 0.42 9E-06 42.4 3.8 92 206-341 85-176 (196)
9 PLN02726 dolichyl-phosphate be 88.1 2.2 4.8E-05 39.3 7.7 107 131-242 8-128 (243)
10 cd02525 Succinoglycan_BP_ExoA 87.6 0.99 2.1E-05 40.2 4.9 125 206-341 80-208 (249)
11 cd04195 GT2_AmsE_like GT2_AmsE 84.2 0.62 1.3E-05 40.6 1.9 116 206-338 79-198 (201)
12 cd06433 GT_2_WfgS_like WfgS an 82.2 1.5 3.3E-05 37.3 3.4 36 206-241 74-110 (202)
13 COG1216 Predicted glycosyltran 80.2 8.8 0.00019 37.2 8.3 137 208-347 85-226 (305)
14 cd06437 CESA_CaSu_A2 Cellulose 79.3 1.3 2.8E-05 40.1 2.1 130 206-345 86-217 (232)
15 cd06442 DPM1_like DPM1_like re 73.6 2.7 5.8E-05 37.1 2.5 35 206-240 77-111 (224)
16 cd04196 GT_2_like_d Subfamily 72.1 2.6 5.5E-05 36.7 2.0 46 292-341 158-203 (214)
17 PF10111 Glyco_tranf_2_2: Glyc 71.1 4 8.6E-05 39.3 3.2 94 136-230 2-111 (281)
18 PF13632 Glyco_trans_2_3: Glyc 70.8 24 0.00052 30.9 7.8 122 210-345 1-127 (193)
19 cd04188 DPG_synthase DPG_synth 70.2 2.1 4.6E-05 38.1 1.1 34 206-239 81-114 (211)
20 cd06913 beta3GnTL1_like Beta 1 67.7 6 0.00013 35.4 3.5 128 206-342 83-210 (219)
21 PF00535 Glycos_transf_2: Glyc 63.9 5.5 0.00012 32.4 2.2 38 206-243 77-114 (169)
22 cd06434 GT2_HAS Hyaluronan syn 63.3 4 8.8E-05 36.4 1.5 62 182-246 55-116 (235)
23 PF03672 UPF0154: Uncharacteri 62.6 4.7 0.0001 32.6 1.6 17 18-34 3-19 (64)
24 cd06421 CESA_CelA_like CESA_Ce 61.8 6.8 0.00015 34.8 2.6 125 206-342 83-212 (234)
25 cd06439 CESA_like_1 CESA_like_ 61.4 4 8.7E-05 37.0 1.1 39 207-245 109-147 (251)
26 PTZ00260 dolichyl-phosphate be 59.0 7.4 0.00016 38.9 2.6 189 132-336 70-287 (333)
27 PF02434 Fringe: Fringe-like; 57.7 3 6.6E-05 40.4 -0.3 189 134-347 9-213 (252)
28 cd06435 CESA_NdvC_like NdvC_li 54.5 7.1 0.00015 35.1 1.5 123 207-338 84-206 (236)
29 PF13506 Glyco_transf_21: Glyc 53.3 5.9 0.00013 36.1 0.8 124 206-344 30-156 (175)
30 PRK01844 hypothetical protein; 52.7 8.8 0.00019 31.8 1.6 16 19-34 11-26 (72)
31 cd02522 GT_2_like_a GT_2_like_ 52.0 30 0.00066 30.4 5.1 40 206-245 71-110 (221)
32 cd06420 GT2_Chondriotin_Pol_N 51.4 38 0.00082 28.9 5.4 26 206-231 78-103 (182)
33 PRK13915 putative glucosyl-3-p 45.0 81 0.0017 31.4 7.3 216 132-378 31-268 (306)
34 PRK10714 undecaprenyl phosphat 44.4 44 0.00095 33.3 5.4 102 132-239 6-121 (325)
35 PF11688 DUF3285: Protein of u 43.5 6.4 0.00014 29.9 -0.4 30 6-36 13-42 (45)
36 PRK00523 hypothetical protein; 42.1 16 0.00035 30.3 1.6 16 19-34 12-27 (72)
37 cd00761 Glyco_tranf_GTA_type G 41.5 22 0.00048 27.8 2.3 36 207-242 77-113 (156)
38 PRK11204 N-glycosyltransferase 41.3 89 0.0019 31.4 7.1 196 132-345 54-264 (420)
39 cd06423 CESA_like CESA_like is 40.5 17 0.00038 29.2 1.6 38 207-244 78-116 (180)
40 PF06295 DUF1043: Protein of u 40.0 17 0.00036 32.2 1.5 18 18-35 2-19 (128)
41 PF14654 Epiglycanin_C: Mucin, 39.8 15 0.00033 32.3 1.2 30 9-38 8-42 (106)
42 PRK11677 hypothetical protein; 39.6 18 0.00039 32.9 1.7 17 19-35 7-23 (134)
43 cd04184 GT2_RfbC_Mx_like Myxoc 37.7 26 0.00056 30.4 2.3 37 206-242 82-119 (202)
44 cd04192 GT_2_like_e Subfamily 36.4 28 0.0006 30.6 2.3 37 206-242 81-117 (229)
45 KOG2978 Dolichol-phosphate man 35.8 50 0.0011 32.6 4.1 161 132-303 3-178 (238)
46 cd06427 CESA_like_2 CESA_like_ 32.5 42 0.00091 30.8 2.9 38 206-243 83-122 (241)
47 PF12072 DUF3552: Domain of un 32.5 21 0.00045 33.7 0.9 18 19-36 3-20 (201)
48 PF13712 Glyco_tranf_2_5: Glyc 31.9 1.2E+02 0.0026 28.8 5.9 31 206-236 53-85 (217)
49 TIGR03469 HonB hopene-associat 29.5 51 0.0011 33.3 3.2 34 207-240 133-166 (384)
50 PF09258 Glyco_transf_64: Glyc 28.6 22 0.00049 34.5 0.5 59 176-235 45-103 (247)
51 PF12996 DUF3880: DUF based on 26.8 31 0.00068 27.7 1.0 25 202-236 13-37 (79)
52 PF13807 GNVR: G-rich domain o 26.8 57 0.0012 26.2 2.5 21 10-30 54-74 (82)
53 cd00505 Glyco_transf_8 Members 25.9 88 0.0019 29.5 3.9 87 133-231 31-118 (246)
54 PF01762 Galactosyl_T: Galacto 24.7 1.1E+02 0.0023 27.9 4.1 178 117-325 6-186 (195)
55 PF12621 DUF3779: Phosphate me 23.9 43 0.00093 28.2 1.3 44 197-244 34-77 (95)
56 PRK14583 hmsR N-glycosyltransf 22.9 2.3E+02 0.0051 29.2 6.6 98 132-234 75-182 (444)
57 COG0016 PheS Phenylalanyl-tRNA 21.9 70 0.0015 33.2 2.6 22 280-301 271-293 (335)
58 PF09828 Chrome_Resist: Chroma 21.8 59 0.0013 29.9 1.8 52 193-250 15-84 (135)
59 PRK10073 putative glycosyl tra 20.9 88 0.0019 31.2 3.0 105 132-241 6-119 (328)
60 cd04190 Chitin_synth_C C-termi 20.8 1E+02 0.0022 28.8 3.2 30 205-234 71-100 (244)
61 cd06438 EpsO_like EpsO protein 20.6 97 0.0021 27.0 2.9 29 206-234 80-108 (183)
62 KOG4179 Lysyl hydrolase/glycos 20.5 53 0.0011 35.7 1.4 62 185-251 77-150 (568)
63 PF06295 DUF1043: Protein of u 20.4 43 0.00093 29.7 0.6 20 22-41 2-21 (128)
64 PF05060 MGAT2: N-acetylglucos 20.4 3.5E+02 0.0076 28.5 7.2 54 287-341 232-290 (356)
No 1
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=100.00 E-value=1.8e-130 Score=949.25 Aligned_cols=293 Identities=61% Similarity=1.157 Sum_probs=287.0
Q ss_pred eeccCCCCCcCCCCCCceecCCCCccccCCCCCCCCCCCCCceEEEEEeccccccchhHHhhccccCcEEEEEEECCCCC
Q 015489 92 IWIPTNPRGAERLAPGIIESQSDLYPRRLWGSPDKDLPIRPKYLVTFTVGFDLKHNIDAAVKKFSENFTIMLFHYDGRTS 171 (406)
Q Consensus 92 ~~~~~~p~g~e~LP~giv~~~sd~~l~~Lwg~p~~~~~~~~k~Lla~~VG~~qk~~vd~~v~kf~~nF~vmLFhYDG~~~ 171 (406)
|+++++|+|+|+||+|||+++|||+||||||.|.+|.+.++|||||||||+|||++||++|+||++|||||||||||++|
T Consensus 1 ~~~~~~p~g~e~Lp~giv~~~sd~~~r~lw~~p~~~~~~~~k~Lla~~VG~kqk~~vd~~v~Kf~~nF~i~LfhYDg~vd 80 (294)
T PF05212_consen 1 IWVPCNPRGAERLPPGIVVRESDLELRPLWGNPSEDLPKKPKYLLAMTVGIKQKDNVDAIVKKFSDNFDIMLFHYDGRVD 80 (294)
T ss_pred CCcCCCCCccccCCCCccccCCCceeeecCCCccccccCCCceEEEEEecHHHHhhhhHHHhhhccCceEEEEEecCCcC
Confidence 68999999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred cccccccccceEEEEeeccccccccccccCcccccCccEEEEecCcccCCCCChHHHHHHHHHhCCcccCCCccCCCC-c
Q 015489 172 DWEEFEWSKRAIHVSARKQTKWWYAKRFLHPDIVASYDYIFIWDEDLGVENFNGEEYIKLVRKHGLEISQPGLEPNGW-L 250 (406)
Q Consensus 172 ~W~d~eWs~~aiHv~a~kqtKWw~akRFLHPdiva~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~-i 250 (406)
+|+|||||++||||+++|||||||||||||||+|++|||||||||||+||+|+|+|||+||++||||||||||+++++ +
T Consensus 81 ~w~~~~ws~~aiHv~~~kqtKww~akrfLHPdiv~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~~~~~~ 160 (294)
T PF05212_consen 81 EWDDFEWSDRAIHVSARKQTKWWFAKRFLHPDIVAPYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDPDSSEI 160 (294)
T ss_pred chhhcccccceEEEEeccceEEeehhhhcChhhhccceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCCCCcee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999875 9
Q ss_pred ceeeeeecCCcceeeeeccccCccCCCCCCCCcceEEEeeccccHHHHHHHhhhhcCCCcceehhhhhchhhhcCCCCeE
Q 015489 251 TWQMTKRRNDTEVHTQTEEREGWCAETHEPPCAAFVEIMATVFSREAWRCVWYMIQNDLVHGWGLDFALRKCVEPAHEKI 330 (406)
Q Consensus 251 sh~iT~R~~~~~vHr~~~~~~g~C~~~~~ppcTgFVEiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~~~~C~~~~~~ki 330 (406)
||+||+|++++++||.+.+++++|+++++||||||||||||||||+|||||||||||||+|||||||+|++|++.+++||
T Consensus 161 ~~~iT~R~~~~~vhr~~~~~~~~~~~~~~ppct~fVEiMAPVFSr~Awrcvw~miqNDLvhGWGLDf~~~~c~~~~~~ki 240 (294)
T PF05212_consen 161 HHPITKRRPDSEVHRKTRGGPRCCDDSTGPPCTGFVEIMAPVFSRAAWRCVWHMIQNDLVHGWGLDFKWGYCAGDRHKKI 240 (294)
T ss_pred eeeEEeecCCceeEeccCCCCCcCCCCCCCCcceEEEEecceechHHHHHHHhcccCCCccccchhhhHHHHhccccccE
Confidence 99999999999999988888888999999999999999999999999999999999999999999999999998889999
Q ss_pred EEEeeeeEEeecCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015489 331 GVVDAQWIVHQGVPSLGNQGQPHDGRAPWEAVRERCKNEWEMFKDRMTSAEKAY 384 (406)
Q Consensus 331 GVVDa~~VvH~g~PtLg~~g~~~~~~~~~~~vR~r~~~E~~~F~~R~~~A~k~~ 384 (406)
||||||||+|+++|||||||.+.++..+|.+||+||++||++|++||++|+|+|
T Consensus 241 GVVDs~~VvH~gvptLG~~~~~~~~~~~~~~Vr~r~~~E~~~F~~R~~~a~~~~ 294 (294)
T PF05212_consen 241 GVVDSQYVVHTGVPTLGGQGNSEKGKDPREEVRRRSFAEMRIFQKRWANAVKEY 294 (294)
T ss_pred EEEeeEEEEEcCCCcCCCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999987
No 2
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=94.35 E-value=1.1 Score=42.78 Aligned_cols=171 Identities=13% Similarity=0.037 Sum_probs=91.0
Q ss_pred cCccEEEEecCcccCCCCChHHHHHHHHHhCCcccCCCccCCCC--cceeeeee-cC---Ccceeeeeccc--cCccCC-
Q 015489 206 ASYDYIFIWDEDLGVENFNGEEYIKLVRKHGLEISQPGLEPNGW--LTWQMTKR-RN---DTEVHTQTEER--EGWCAE- 276 (406)
Q Consensus 206 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~--ish~iT~R-~~---~~~vHr~~~~~--~g~C~~- 276 (406)
+..|||++.|+|..++..-++++++.+....-.+.-|.+..-.. ..+.-... .. ...++..-... ...+..
T Consensus 82 A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (299)
T cd02510 82 ATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEERRRES 161 (299)
T ss_pred ccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCHHHhhhcC
Confidence 67999999999999999999999999998887777787653321 11211110 00 00111100000 000000
Q ss_pred CCCCCCcceEEEeeccccHHHHHHHhhhhcCCCcceeh-hhhhchhhhcCCCCeEEEEeeeeEEeecC-CCCCCCCCCCC
Q 015489 277 THEPPCAAFVEIMATVFSREAWRCVWYMIQNDLVHGWG-LDFALRKCVEPAHEKIGVVDAQWIVHQGV-PSLGNQGQPHD 354 (406)
Q Consensus 277 ~~~ppcTgFVEiMAPVFSR~Awrcvw~miqNDLvhGWG-LDf~~~~C~~~~~~kiGVVDa~~VvH~g~-PtLg~~g~~~~ 354 (406)
+..+..+.++=..+=+++|++|.-+=.| . .....|| =|.-+..=+.-...+|-++-...|.|... +.-+....
T Consensus 162 ~~~~~~~~~~~g~~~~irr~~~~~vGgf-D-e~~~~~~~ED~Dl~~R~~~~G~~i~~~p~a~v~H~~~~~~~~~~~~--- 236 (299)
T cd02510 162 PTAPIRSPTMAGGLFAIDREWFLELGGY-D-EGMDIWGGENLELSFKVWQCGGSIEIVPCSRVGHIFRRKRKPYTFP--- 236 (299)
T ss_pred CCCCccCccccceeeEEEHHHHHHhCCC-C-CcccccCchhHHHHHHHHHcCCeEEEeeccEEEEeccccCCCCCCC---
Confidence 1111122233233446899999887443 2 3335665 35443212222457899999999999765 44322111
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015489 355 GRAPWEAVRERCKNEWEMFKDRMTSAEKAYLEA 387 (406)
Q Consensus 355 ~~~~~~~vR~r~~~E~~~F~~R~~~A~k~~~~~ 387 (406)
.+ .. +.......|.++|-+..+.++..
T Consensus 237 ~~--~~----~~~~n~~r~~~~w~~~~~~~~~~ 263 (299)
T cd02510 237 GG--SG----TVLRNYKRVAEVWMDEYKEYFYK 263 (299)
T ss_pred Cc--cc----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 00 22234456777777666666644
No 3
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.18 E-value=0.11 Score=42.96 Aligned_cols=91 Identities=20% Similarity=0.126 Sum_probs=61.5
Q ss_pred CccEEEEecCcccCCCCChHHHHHHHHHh-CCcccCCCccCCCCcceeeeeecCCcceeeeeccccCccCCCCCCCCcce
Q 015489 207 SYDYIFIWDEDLGVENFNGEEYIKLVRKH-GLEISQPGLEPNGWLTWQMTKRRNDTEVHTQTEEREGWCAETHEPPCAAF 285 (406)
Q Consensus 207 ~YDYIflwDDDL~vd~f~i~ry~~Ivr~~-gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ppcTgF 285 (406)
.+|||++.|+|...+...+.++.+.+.+. +..+..+. + +
T Consensus 74 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~-------------------~------------------~--- 113 (166)
T cd04186 74 KGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK-------------------V------------------S--- 113 (166)
T ss_pred CCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc-------------------C------------------c---
Confidence 79999999999999888788887754433 33333222 0 0
Q ss_pred EEEeeccccHHHHHHHhhhhcCCCcceehhhhhchhhhcCCCCeEEEEeeeeEEee
Q 015489 286 VEIMATVFSREAWRCVWYMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDAQWIVHQ 341 (406)
Q Consensus 286 VEiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~~~~C~~~~~~kiGVVDa~~VvH~ 341 (406)
..+.+|++++|+-+-.+ ++....+|-|..+...+.....+|..+....+.|.
T Consensus 114 --~~~~~~~~~~~~~~~~~--~~~~~~~~eD~~~~~~~~~~g~~i~~~~~~~~~h~ 165 (166)
T cd04186 114 --GAFLLVRREVFEEVGGF--DEDFFLYYEDVDLCLRARLAGYRVLYVPQAVIYHH 165 (166)
T ss_pred --eeeEeeeHHHHHHcCCC--ChhhhccccHHHHHHHHHHcCCeEEEccceEEEec
Confidence 12357899999865322 23223477787776555545679999999999995
No 4
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=94.13 E-value=0.23 Score=46.62 Aligned_cols=128 Identities=11% Similarity=0.012 Sum_probs=72.3
Q ss_pred cCccEEEEecCcccCCCCChHHHHHHHHHh--CCcccCCCc-cCCCCcceeeeeecCCcceeeeeccccCccCCCCCCCC
Q 015489 206 ASYDYIFIWDEDLGVENFNGEEYIKLVRKH--GLEISQPGL-EPNGWLTWQMTKRRNDTEVHTQTEEREGWCAETHEPPC 282 (406)
Q Consensus 206 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~--gLeISQPAL-d~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ppc 282 (406)
+.+|||++.|+|..++.-.++++++.+++. +.-+..|.. +.+.....+..... +... +.. ...+.+.+.-
T Consensus 72 ~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~-----~~~~~~~~~~ 144 (281)
T TIGR01556 72 RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLD-GLLL-RQI-----SLDGLTTPQK 144 (281)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeec-ccce-eee-----cccccCCcee
Confidence 379999999999999988899999988876 567777764 22221112211111 1100 000 0001111100
Q ss_pred cceEEEeeccccHHHHHHHhhhhcCCCcceehhhhhchhhhcCCCCeEEEEeeeeEEeec
Q 015489 283 AAFVEIMATVFSREAWRCVWYMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDAQWIVHQG 342 (406)
Q Consensus 283 TgFVEiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~~~~C~~~~~~kiGVVDa~~VvH~g 342 (406)
+.++=.-..+++|++++.+=. +..++ -.++.|.-|..=+.....++.++....+.|..
T Consensus 145 ~~~~~~sg~li~~~~~~~iG~-fde~~-fi~~~D~e~~~R~~~~G~~i~~~~~~~~~H~~ 202 (281)
T TIGR01556 145 TSFLISSGCLITREVYQRLGM-MDEEL-FIDHVDTEWSLRAQNYGIPLYIDPDIVLEHRI 202 (281)
T ss_pred ccEEEcCcceeeHHHHHHhCC-ccHhh-cccchHHHHHHHHHHCCCEEEEeCCEEEEEec
Confidence 111100123689999988732 33343 24667776633333346799999999999963
No 5
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.55 E-value=0.25 Score=43.32 Aligned_cols=100 Identities=18% Similarity=0.189 Sum_probs=66.8
Q ss_pred cCccEEEEecCcccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCcceeeeeccccCccCCCCCCCCcce
Q 015489 206 ASYDYIFIWDEDLGVENFNGEEYIKLVRKHGLEISQPGLEPNGWLTWQMTKRRNDTEVHTQTEEREGWCAETHEPPCAAF 285 (406)
Q Consensus 206 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ppcTgF 285 (406)
+.+||+++.|+|..++.-.++++.+.++..++.+..|....... ++.+
T Consensus 78 ~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~- 125 (202)
T cd04185 78 LGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDPDG-------------------------------SFVG- 125 (202)
T ss_pred cCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcCCC-------------------------------ceEE-
Confidence 57999999999999998888888888775555555443322110 1112
Q ss_pred EEEeeccccHHHHHHHhhhhcCCCcceehhhhhchhhhcCCCCeEEEEeeeeEEeecCCC
Q 015489 286 VEIMATVFSREAWRCVWYMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDAQWIVHQGVPS 345 (406)
Q Consensus 286 VEiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~~~~C~~~~~~kiGVVDa~~VvH~g~Pt 345 (406)
-+++|++|+.+ .+. .+.-..||=|.-+..-+.....++ .+.+..+.|....+
T Consensus 126 -----~~~~~~~~~~~-g~~-~~~~~~~~eD~~~~~r~~~~G~~i-~~~~~~~~h~~~~~ 177 (202)
T cd04185 126 -----VLISRRVVEKI-GLP-DKEFFIWGDDTEYTLRASKAGPGI-YVPDAVVVHKTAIN 177 (202)
T ss_pred -----EEEeHHHHHHh-CCC-ChhhhccchHHHHHHHHHHcCCcE-EecceEEEEccccc
Confidence 24889999766 332 333457887876654444456788 99999999976544
No 6
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=93.37 E-value=0.27 Score=44.01 Aligned_cols=123 Identities=17% Similarity=0.089 Sum_probs=62.0
Q ss_pred CccEEEEecCcccCCCCChHHHH---HHHH-HhCCcccCCCccCCCC-cceeeeeecCCcceeeeeccccCccCCCCCCC
Q 015489 207 SYDYIFIWDEDLGVENFNGEEYI---KLVR-KHGLEISQPGLEPNGW-LTWQMTKRRNDTEVHTQTEEREGWCAETHEPP 281 (406)
Q Consensus 207 ~YDYIflwDDDL~vd~f~i~ry~---~Ivr-~~gLeISQPALd~~S~-ish~iT~R~~~~~vHr~~~~~~g~C~~~~~pp 281 (406)
.||||++.|+|..++...+++++ +..+ ...+-+..|....... ..... .+.....+. ... +. ..+
T Consensus 75 ~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~----~~---~~~ 144 (237)
T cd02526 75 GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPG-VRKSGYKLR--IQK----EG---EEG 144 (237)
T ss_pred CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccc-eeccCccce--ecc----cc---cCC
Confidence 68999999999999988888875 2221 2234455554432211 11100 011110000 000 00 000
Q ss_pred CcceEEEe--eccccHHHHHHHhhhhcCCCcceehhhhhchhhhcCCCCeEEEEeeeeEEee
Q 015489 282 CAAFVEIM--ATVFSREAWRCVWYMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDAQWIVHQ 341 (406)
Q Consensus 282 cTgFVEiM--APVFSR~Awrcvw~miqNDLvhGWGLDf~~~~C~~~~~~kiGVVDa~~VvH~ 341 (406)
+...-.++ +-+|+|++++.+=.+ ..++ ...|-|+.|..-+.-...++..+....|.|.
T Consensus 145 ~~~~~~~~~~~~~~rr~~~~~~ggf-d~~~-~~~~eD~d~~~r~~~~G~~~~~~~~~~v~h~ 204 (237)
T cd02526 145 LKEVDFLITSGSLISLEALEKVGGF-DEDL-FIDYVDTEWCLRARSKGYKIYVVPDAVLKHE 204 (237)
T ss_pred ceEeeeeeccceEEcHHHHHHhCCC-CHHH-cCccchHHHHHHHHHcCCcEEEEcCeEEEec
Confidence 10000111 125899999887443 2232 2335566665444445678998888888885
No 7
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=90.74 E-value=0.67 Score=41.33 Aligned_cols=127 Identities=18% Similarity=0.106 Sum_probs=64.9
Q ss_pred cCccEEEEecCcccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCcceeeeeccccCccCCC-CCCCCcc
Q 015489 206 ASYDYIFIWDEDLGVENFNGEEYIKLVRKHGLEISQPGLEPNGWLTWQMTKRRNDTEVHTQTEEREGWCAET-HEPPCAA 284 (406)
Q Consensus 206 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~-~~ppcTg 284 (406)
..+|||++.|+|..++...+.++++.+...+..+.|+....... ...++.-......+.......+ ... ...+|+|
T Consensus 85 ~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~G 161 (228)
T PF13641_consen 85 ARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDND-RNWLTRLQDLFFARWHLRFRSG--RRALGVAFLSG 161 (228)
T ss_dssp ---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTC-CCEEEE-TT--S-EETTTS-TT---B----S-B--
T ss_pred cCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCC-CCHHHHHHHHHHhhhhhhhhhh--hcccceeeccC
Confidence 45999999999999999999999999977888888866644321 1112211111100000000000 000 1111221
Q ss_pred eEEEeeccccHHHHHHHhhhhcCCCcceehhhhhchhhhcCCCCeEEEEeeeeEEeecC
Q 015489 285 FVEIMATVFSREAWRCVWYMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDAQWIVHQGV 343 (406)
Q Consensus 285 FVEiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~~~~C~~~~~~kiGVVDa~~VvH~g~ 343 (406)
-+=+|+|++++-+-.+ +. ..-|=|+.+..-+.....++.......|.|...
T Consensus 162 ----~~~~~rr~~~~~~g~f--d~--~~~~eD~~l~~r~~~~G~~~~~~~~~~v~~~~~ 212 (228)
T PF13641_consen 162 ----SGMLFRRSALEEVGGF--DP--FILGEDFDLCLRLRAAGWRIVYAPDALVYHEEP 212 (228)
T ss_dssp ----TEEEEEHHHHHHH-S----S--SSSSHHHHHHHHHHHTT--EEEEEEEEEEE--S
T ss_pred ----cEEEEEHHHHHHhCCC--CC--CCcccHHHHHHHHHHCCCcEEEECCcEEEEeCC
Confidence 2337899999888543 23 344578777655555678999999888999633
No 8
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=89.44 E-value=0.42 Score=42.44 Aligned_cols=92 Identities=15% Similarity=0.168 Sum_probs=56.1
Q ss_pred cCccEEEEecCcccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCcceeeeeccccCccCCCCCCCCcce
Q 015489 206 ASYDYIFIWDEDLGVENFNGEEYIKLVRKHGLEISQPGLEPNGWLTWQMTKRRNDTEVHTQTEEREGWCAETHEPPCAAF 285 (406)
Q Consensus 206 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ppcTgF 285 (406)
+.+|||++.|.|..++...+.++++.....+..+.++. | ++|
T Consensus 85 a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~------------------------------~-------~~g- 126 (196)
T cd02520 85 ARYDILVISDSDISVPPDYLRRMVAPLMDPGVGLVTCL------------------------------C-------AFG- 126 (196)
T ss_pred CCCCEEEEECCCceEChhHHHHHHHHhhCCCCCeEEee------------------------------c-------ccC-
Confidence 57999999999998877777777665432222222211 0 111
Q ss_pred EEEeeccccHHHHHHHhhhhcCCCcceehhhhhchhhhcCCCCeEEEEeeeeEEee
Q 015489 286 VEIMATVFSREAWRCVWYMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDAQWIVHQ 341 (406)
Q Consensus 286 VEiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~~~~C~~~~~~kiGVVDa~~VvH~ 341 (406)
.+-+|+|++|+.+=.+ .....-++=|+.+..-+.....++..++.. ++|.
T Consensus 127 ---~~~~~r~~~~~~~ggf--~~~~~~~~eD~~l~~rl~~~G~~i~~~~~~-~~~~ 176 (196)
T cd02520 127 ---KSMALRREVLDAIGGF--EAFADYLAEDYFLGKLIWRLGYRVVLSPYV-VMQP 176 (196)
T ss_pred ---ceeeeEHHHHHhccCh--HHHhHHHHHHHHHHHHHHHcCCeEEEcchh-eecc
Confidence 2347899999876433 111123466887776666567899888775 5553
No 9
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=88.09 E-value=2.2 Score=39.34 Aligned_cols=107 Identities=22% Similarity=0.215 Sum_probs=60.9
Q ss_pred CCceEEEEEeccccccchhHHhhccc------cCcEEEEEEECCCCCccccc--cc----ccceEEEEe--ecccccccc
Q 015489 131 RPKYLVTFTVGFDLKHNIDAAVKKFS------ENFTIMLFHYDGRTSDWEEF--EW----SKRAIHVSA--RKQTKWWYA 196 (406)
Q Consensus 131 ~~k~Lla~~VG~~qk~~vd~~v~kf~------~nF~vmLFhYDG~~~~W~d~--eW----s~~aiHv~a--~kqtKWw~a 196 (406)
.++..|++++ ++....+..+++... .+|.|+ +-=||+.|+=.++ ++ ....+++.. .+++|---.
T Consensus 8 ~~~vsVvIp~-yne~~~l~~~l~~l~~~~~~~~~~eii-vvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~ 85 (243)
T PLN02726 8 AMKYSIIVPT-YNERLNIALIVYLIFKALQDVKDFEII-VVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAY 85 (243)
T ss_pred CceEEEEEcc-CCchhhHHHHHHHHHHHhccCCCeEEE-EEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHH
Confidence 4567777776 666666655444331 266666 4568887642211 11 111233322 223321111
Q ss_pred ccccCcccccCccEEEEecCcccCCCCChHHHHHHHHHhCCcccCC
Q 015489 197 KRFLHPDIVASYDYIFIWDEDLGVENFNGEEYIKLVRKHGLEISQP 242 (406)
Q Consensus 197 kRFLHPdiva~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQP 242 (406)
+.-+ -.+..|||++.|.|...+.-.++++++.+.+.+.++...
T Consensus 86 n~g~---~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 128 (243)
T PLN02726 86 IHGL---KHASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTG 128 (243)
T ss_pred HHHH---HHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 1111 135789999999999988888888898887777666544
No 10
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=87.60 E-value=0.99 Score=40.21 Aligned_cols=125 Identities=12% Similarity=0.000 Sum_probs=65.6
Q ss_pred cCccEEEEecCcccCCCCChHHHHHHHHHhCCcccCCCccCCC-CcceeeeeecCCcceeeeeccccCccCCC---CCCC
Q 015489 206 ASYDYIFIWDEDLGVENFNGEEYIKLVRKHGLEISQPGLEPNG-WLTWQMTKRRNDTEVHTQTEEREGWCAET---HEPP 281 (406)
Q Consensus 206 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S-~ish~iT~R~~~~~vHr~~~~~~g~C~~~---~~pp 281 (406)
+.+|||.+.|+|..++...++++++..++.+..+.+....... ........+.....+.. .....+... ...+
T Consensus 80 a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 156 (249)
T cd02525 80 SRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGS---GGSAYRGGAVKIGYVD 156 (249)
T ss_pred hCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhcc---CCcccccccccccccc
Confidence 3799999999999998888999998888777776655432211 10000000000000000 000000000 0001
Q ss_pred CcceEEEeeccccHHHHHHHhhhhcCCCcceehhhhhchhhhcCCCCeEEEEeeeeEEee
Q 015489 282 CAAFVEIMATVFSREAWRCVWYMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDAQWIVHQ 341 (406)
Q Consensus 282 cTgFVEiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~~~~C~~~~~~kiGVVDa~~VvH~ 341 (406)
+.++ =+|+|++|+.+=.+ ... ...|-|+.+..-+.....++..+....+.|.
T Consensus 157 ~~~~-----~~~~~~~~~~~g~~-~~~--~~~~eD~~l~~r~~~~G~~~~~~~~~~~~~~ 208 (249)
T cd02525 157 TVHH-----GAYRREVFEKVGGF-DES--LVRNEDAELNYRLRKAGYKIWLSPDIRVYYY 208 (249)
T ss_pred cccc-----ceEEHHHHHHhCCC-Ccc--cCccchhHHHHHHHHcCcEEEEcCCeEEEEc
Confidence 1111 15799999876322 222 2346676554333334678999998888885
No 11
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=84.20 E-value=0.62 Score=40.58 Aligned_cols=116 Identities=14% Similarity=0.084 Sum_probs=62.0
Q ss_pred cCccEEEEecCcccCCCCChHHHHHHHHHh-CCcccCCCccCCC--CcceeeeeecCCcceeeeecc-ccCccCCCCCCC
Q 015489 206 ASYDYIFIWDEDLGVENFNGEEYIKLVRKH-GLEISQPGLEPNG--WLTWQMTKRRNDTEVHTQTEE-REGWCAETHEPP 281 (406)
Q Consensus 206 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~-gLeISQPALd~~S--~ish~iT~R~~~~~vHr~~~~-~~g~C~~~~~pp 281 (406)
+.+|||++.|+|..++.-.+++.++.++++ +..+..+....-. ...+.... .+.. .+.... ....|.
T Consensus 79 a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~------ 149 (201)
T cd04195 79 CTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIGKRR-LPTS--HDDILKFARRRSP------ 149 (201)
T ss_pred cCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeecccc-CCCC--HHHHHHHhccCCC------
Confidence 579999999999999888888888887654 5666555432211 11111110 0000 000000 001111
Q ss_pred CcceEEEeeccccHHHHHHHhhhhcCCCcceehhhhhchhhhcCCCCeEEEEeeeeE
Q 015489 282 CAAFVEIMATVFSREAWRCVWYMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDAQWI 338 (406)
Q Consensus 282 cTgFVEiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~~~~C~~~~~~kiGVVDa~~V 338 (406)
+..++=+|+|++++.+-.+- .. -++-|+.+...+.....++..+....+
T Consensus 150 ----~~~~~~~~rr~~~~~~g~~~--~~--~~~eD~~~~~r~~~~g~~~~~~~~~~~ 198 (201)
T cd04195 150 ----FNHPTVMFRKSKVLAVGGYQ--DL--PLVEDYALWARMLANGARFANLPEILV 198 (201)
T ss_pred ----CCChHHhhhHHHHHHcCCcC--CC--CCchHHHHHHHHHHcCCceecccHHHh
Confidence 11112368999998875542 22 467787766554334567777655443
No 12
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=82.16 E-value=1.5 Score=37.27 Aligned_cols=36 Identities=11% Similarity=-0.045 Sum_probs=26.6
Q ss_pred cCccEEEEecCcccCCCCChHHHHHHH-HHhCCcccC
Q 015489 206 ASYDYIFIWDEDLGVENFNGEEYIKLV-RKHGLEISQ 241 (406)
Q Consensus 206 a~YDYIflwDDDL~vd~f~i~ry~~Iv-r~~gLeISQ 241 (406)
+..|||++.|+|..++.-.+.+.++.. +..+..+..
T Consensus 74 a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~ 110 (202)
T cd06433 74 ATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVY 110 (202)
T ss_pred cCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEE
Confidence 468999999999999988888888444 333444443
No 13
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=80.23 E-value=8.8 Score=37.22 Aligned_cols=137 Identities=21% Similarity=0.064 Sum_probs=84.3
Q ss_pred ccEEEEecCcccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCcceeeeeccccCccCC-----CCCCCC
Q 015489 208 YDYIFIWDEDLGVENFNGEEYIKLVRKHGLEISQPGLEPNGWLTWQMTKRRNDTEVHTQTEEREGWCAE-----THEPPC 282 (406)
Q Consensus 208 YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~-----~~~ppc 282 (406)
|+|++++++|..++...++++++.+++.+-...-+++-.+..-...+..+........ .......+.. ...+.|
T Consensus 85 ~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 163 (305)
T COG1216 85 DDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRGGESDGLT-GGWRASPLLEIAPDLSSYLEV 163 (305)
T ss_pred CcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchheecccccccc-ccceecccccccccccchhhh
Confidence 5599999999999999999999999999887777776654322222222211000000 0000111111 112334
Q ss_pred cceEEEeeccccHHHHHHHhhhhcCCCcceehhhhhchhhhcCCCCeEEEEeeeeEEeecCCCCC
Q 015489 283 AAFVEIMATVFSREAWRCVWYMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDAQWIVHQGVPSLG 347 (406)
Q Consensus 283 TgFVEiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~~~~C~~~~~~kiGVVDa~~VvH~g~PtLg 347 (406)
..++..-+-+++|++++-+=.+ ..+. =.+.-|.-|..=+.-...++..+=.-.|.|..--+.+
T Consensus 164 ~~~~~G~~~li~~~~~~~vG~~-de~~-F~y~eD~D~~~R~~~~G~~i~~~p~a~i~H~~g~s~~ 226 (305)
T COG1216 164 VASLSGACLLIRREAFEKVGGF-DERF-FIYYEDVDLCLRARKAGYKIYYVPDAIIYHKIGSSKG 226 (305)
T ss_pred hhhcceeeeEEcHHHHHHhCCC-Cccc-ceeehHHHHHHHHHHcCCeEEEeeccEEEEeccCCCC
Confidence 4467777788999999887543 2333 3666776664444445568999999999997555543
No 14
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=79.29 E-value=1.3 Score=40.11 Aligned_cols=130 Identities=15% Similarity=0.006 Sum_probs=68.2
Q ss_pred cCccEEEEecCcccCCCCChHHHHHHHHHhCCcccCCCccCC-CCcceeeee-ecCCcceeeeeccccCccCCCCCCCCc
Q 015489 206 ASYDYIFIWDEDLGVENFNGEEYIKLVRKHGLEISQPGLEPN-GWLTWQMTK-RRNDTEVHTQTEEREGWCAETHEPPCA 283 (406)
Q Consensus 206 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~-S~ish~iT~-R~~~~~vHr~~~~~~g~C~~~~~ppcT 283 (406)
+.+|||++.|.|..++...++++..+....+..+.|+-+... ..-++ ++. +.-....|.... ..+. ....+.
T Consensus 86 a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~----~~~~~~ 159 (232)
T cd06437 86 AKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINANYSL-LTRVQAMSLDYHFTIE-QVAR----SSTGLF 159 (232)
T ss_pred CCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcCCCch-hhHhhhhhHHhhhhHh-HhhH----hhcCCe
Confidence 489999999999999888888877766555555555533211 00000 000 000000000000 0000 000111
Q ss_pred ceEEEeeccccHHHHHHHhhhhcCCCcceehhhhhchhhhcCCCCeEEEEeeeeEEeecCCC
Q 015489 284 AFVEIMATVFSREAWRCVWYMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDAQWIVHQGVPS 345 (406)
Q Consensus 284 gFVEiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~~~~C~~~~~~kiGVVDa~~VvH~g~Pt 345 (406)
..+=.++-+|+|++|+.+-.+ .+ ...+=|+.+...+.....++..++...|.|...++
T Consensus 160 ~~~~g~~~~~rr~~~~~vgg~--~~--~~~~ED~~l~~rl~~~G~~~~~~~~~~v~~~~~~~ 217 (232)
T cd06437 160 FNFNGTAGVWRKECIEDAGGW--NH--DTLTEDLDLSYRAQLKGWKFVYLDDVVVPAELPAS 217 (232)
T ss_pred EEeccchhhhhHHHHHHhCCC--CC--CcchhhHHHHHHHHHCCCeEEEeccceeeeeCCcC
Confidence 111112237999999887554 22 12457877665554456799999888888864444
No 15
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=73.60 E-value=2.7 Score=37.15 Aligned_cols=35 Identities=23% Similarity=0.197 Sum_probs=25.3
Q ss_pred cCccEEEEecCcccCCCCChHHHHHHHHHhCCccc
Q 015489 206 ASYDYIFIWDEDLGVENFNGEEYIKLVRKHGLEIS 240 (406)
Q Consensus 206 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeIS 240 (406)
+..|||++.|+|..++.-.+.++++.+...+..+.
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v 111 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLV 111 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEE
Confidence 45699999999988776667777776555554443
No 16
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=72.05 E-value=2.6 Score=36.68 Aligned_cols=46 Identities=20% Similarity=0.147 Sum_probs=31.1
Q ss_pred cccHHHHHHHhhhhcCCCcceehhhhhchhhhcCCCCeEEEEeeeeEEee
Q 015489 292 VFSREAWRCVWYMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDAQWIVHQ 341 (406)
Q Consensus 292 VFSR~Awrcvw~miqNDLvhGWGLDf~~~~C~~~~~~kiGVVDa~~VvH~ 341 (406)
+|+|++++-+-.+. .. ..|+-|+.+..++.. ..++.+++...+.|+
T Consensus 158 ~~r~~~~~~~~~~~--~~-~~~~~D~~~~~~~~~-~~~~~~~~~~~~~~r 203 (214)
T cd04196 158 AFNRELLELALPFP--DA-DVIMHDWWLALLASA-FGKVVFLDEPLILYR 203 (214)
T ss_pred eEEHHHHHhhcccc--cc-ccccchHHHHHHHHH-cCceEEcchhHHHHh
Confidence 68999998875542 21 167778766655543 458888888777664
No 17
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=71.09 E-value=4 Score=39.31 Aligned_cols=94 Identities=12% Similarity=0.175 Sum_probs=51.7
Q ss_pred EEEEecccccc-----chhHHhhcc-----ccCcEEEEEEECCCCCccc-cc-cccc--ceE-EEEeecccccccccccc
Q 015489 136 VTFTVGFDLKH-----NIDAAVKKF-----SENFTIMLFHYDGRTSDWE-EF-EWSK--RAI-HVSARKQTKWWYAKRFL 200 (406)
Q Consensus 136 la~~VG~~qk~-----~vd~~v~kf-----~~nF~vmLFhYDG~~~~W~-d~-eWs~--~ai-Hv~a~kqtKWw~akRFL 200 (406)
+++||..+... .+..++.+. +.+|.|++..++. .++|. ++ +..+ ..+ .+.-..+.+.|..-+-.
T Consensus 2 iIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~~eiIvvd~~s-~~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~ar 80 (281)
T PF10111_consen 2 IIIPVRNRSERPDILERLRNCLESLSQFQSDPDFEIIVVDDGS-SDEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAKAR 80 (281)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHhcCCCCCEEEEEEECCC-chhHHHHHHHHHhccCceEEEEcCCCCCCcCHHHHH
Confidence 57888887742 332333333 2588888777644 44441 11 1112 122 12212222223222222
Q ss_pred C-cccccCccEEEEecCcccCCCCChHHHHH
Q 015489 201 H-PDIVASYDYIFIWDEDLGVENFNGEEYIK 230 (406)
Q Consensus 201 H-Pdiva~YDYIflwDDDL~vd~f~i~ry~~ 230 (406)
. -=-.+.-|||+++|-|+.++...++++++
T Consensus 81 N~g~~~A~~d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 81 NIGAKYARGDYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred HHHHHHcCCCEEEEEcCCeeeCHHHHHHHHH
Confidence 1 12236899999999999999888888888
No 18
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=70.75 E-value=24 Score=30.92 Aligned_cols=122 Identities=18% Similarity=0.132 Sum_probs=66.9
Q ss_pred EEEEecCcccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCccee-----eeeccccCccCCCCCCCCcc
Q 015489 210 YIFIWDEDLGVENFNGEEYIKLVRKHGLEISQPGLEPNGWLTWQMTKRRNDTEVH-----TQTEEREGWCAETHEPPCAA 284 (406)
Q Consensus 210 YIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vH-----r~~~~~~g~C~~~~~ppcTg 284 (406)
||.+.|+|..++.-...+..+.++.-+..+.|+....... ...++.-+...... +......|.|.
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 70 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRNR-GSLLTRLQDFEYAISHGLSRLSQSSLGRPL--------- 70 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecCC-CChhheeehhhhhhhhhhhHHHHHhcCCCc---------
Confidence 7899999999998888888888885588888888776421 11122222111100 00001112111
Q ss_pred eEEEeeccccHHHHHHHhhhhcCCCcceehhhhhchhhhcCCCCeEEEEeeeeEEeecCCC
Q 015489 285 FVEIMATVFSREAWRCVWYMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDAQWIVHQGVPS 345 (406)
Q Consensus 285 FVEiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~~~~C~~~~~~kiGVVDa~~VvH~g~Pt 345 (406)
++=.-.=+|++++++.+=.+ ++ .--.|=|..+..=+.....+++.++...+ |...|.
T Consensus 71 ~~~G~~~~~r~~~l~~vg~~--~~-~~~~~ED~~l~~~l~~~G~~~~~~~~~~~-~~~~p~ 127 (193)
T PF13632_consen 71 FLSGSGMLFRREALREVGGF--DD-PFSIGEDMDLGFRLRRAGYRIVYVPDAIV-YTEAPP 127 (193)
T ss_pred cccCcceeeeHHHHHHhCcc--cc-cccccchHHHHHHHHHCCCEEEEecccce-eeeCCC
Confidence 11122347899999865221 11 11233455554333334589999998845 444444
No 19
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=70.22 E-value=2.1 Score=38.11 Aligned_cols=34 Identities=29% Similarity=0.362 Sum_probs=24.6
Q ss_pred cCccEEEEecCcccCCCCChHHHHHHHHHhCCcc
Q 015489 206 ASYDYIFIWDEDLGVENFNGEEYIKLVRKHGLEI 239 (406)
Q Consensus 206 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeI 239 (406)
+..|||++.|.|...+.-.+.++++.+...+..+
T Consensus 81 a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~ 114 (211)
T cd04188 81 ARGDYILFADADLATPFEELEKLEEALKTSGYDI 114 (211)
T ss_pred hcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcE
Confidence 3569999999998887777777777654444443
No 20
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=67.69 E-value=6 Score=35.42 Aligned_cols=128 Identities=14% Similarity=-0.046 Sum_probs=62.5
Q ss_pred cCccEEEEecCcccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCcceeeeeccccCccCCCCCCCCcce
Q 015489 206 ASYDYIFIWDEDLGVENFNGEEYIKLVRKHGLEISQPGLEPNGWLTWQMTKRRNDTEVHTQTEEREGWCAETHEPPCAAF 285 (406)
Q Consensus 206 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ppcTgF 285 (406)
+.+|||++.|+|..++...+++.+..+.+....+.-+.......-...-. .+....+.. ..-...+...++ ||+ +
T Consensus 83 a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~-~~~-~ 157 (219)
T cd06913 83 SSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGCQVRRIPEDSTERY-TRWINTLTR--EQLLTQVYTSHG-PTV-I 157 (219)
T ss_pred cCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEEEEEecCcccchhh-HHHHHhcCH--HHHHHHHHhhcC-Ccc-c
Confidence 57999999999999988888887777765443222221110000000000 000000000 000000001111 121 0
Q ss_pred EEEeeccccHHHHHHHhhhhcCCCcceehhhhhchhhhcCCCCeEEEEeeeeEEeec
Q 015489 286 VEIMATVFSREAWRCVWYMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDAQWIVHQG 342 (406)
Q Consensus 286 VEiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~~~~C~~~~~~kiGVVDa~~VvH~g 342 (406)
+-.-+++|++|+.+=.+ ++..-+++=|+.+.+.+.....+|.-+|...+.++.
T Consensus 158 --~~~~~~rr~~~~~~g~f--~~~~~~~~eD~~l~~r~~~~g~~i~~~~~~~~~yr~ 210 (219)
T cd06913 158 --MPTWFCSREWFSHVGPF--DEGGKGVPEDLLFFYEHLRKGGGVYRVDRCLLLYRY 210 (219)
T ss_pred --cccceeehhHHhhcCCc--cchhccchhHHHHHHHHHHcCCceEEEcceeeeeee
Confidence 10125799999876443 232235567876655443345789999887766653
No 21
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=63.88 E-value=5.5 Score=32.37 Aligned_cols=38 Identities=21% Similarity=0.208 Sum_probs=29.7
Q ss_pred cCccEEEEecCcccCCCCChHHHHHHHHHhCCcccCCC
Q 015489 206 ASYDYIFIWDEDLGVENFNGEEYIKLVRKHGLEISQPG 243 (406)
Q Consensus 206 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPA 243 (406)
+..|||++.|+|..++.-.++++++.+++.+-.+.-+.
T Consensus 77 a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 114 (169)
T PF00535_consen 77 AKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGS 114 (169)
T ss_dssp --SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEE
T ss_pred cceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEE
Confidence 46779999999999999999999999999776554433
No 22
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=63.31 E-value=4 Score=36.42 Aligned_cols=62 Identities=10% Similarity=-0.051 Sum_probs=43.5
Q ss_pred eEEEEeeccccccccccccCcccccCccEEEEecCcccCCCCChHHHHHHHHHhCCcccCCCccC
Q 015489 182 AIHVSARKQTKWWYAKRFLHPDIVASYDYIFIWDEDLGVENFNGEEYIKLVRKHGLEISQPGLEP 246 (406)
Q Consensus 182 aiHv~a~kqtKWw~akRFLHPdiva~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~ 246 (406)
..++...+++|-.-...-+ -.+.+|||++.|+|..++...+++.++.+...+..+.++....
T Consensus 55 ~~v~~~~~~g~~~a~n~g~---~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~ 116 (235)
T cd06434 55 IFVITVPHPGKRRALAEGI---RHVTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRI 116 (235)
T ss_pred EEEEecCCCChHHHHHHHH---HHhCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEe
Confidence 4444445555543322211 1248999999999999999999999999887788888776544
No 23
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=62.62 E-value=4.7 Score=32.63 Aligned_cols=17 Identities=29% Similarity=0.847 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhhheee
Q 015489 18 LMITTFVGVAVGFFLGI 34 (406)
Q Consensus 18 ~~~~~~~~~~~gf~~g~ 34 (406)
+|++.++|++.|||++-
T Consensus 3 iilali~G~~~Gff~ar 19 (64)
T PF03672_consen 3 IILALIVGAVIGFFIAR 19 (64)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57888899999999864
No 24
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=61.81 E-value=6.8 Score=34.76 Aligned_cols=125 Identities=11% Similarity=-0.116 Sum_probs=70.1
Q ss_pred cCccEEEEecCcccCCCCChHHHHHHHHH-hCCcccCCCccCC-CCcceeeeeecC---CcceeeeeccccCccCCCCCC
Q 015489 206 ASYDYIFIWDEDLGVENFNGEEYIKLVRK-HGLEISQPGLEPN-GWLTWQMTKRRN---DTEVHTQTEEREGWCAETHEP 280 (406)
Q Consensus 206 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~-~gLeISQPALd~~-S~ish~iT~R~~---~~~vHr~~~~~~g~C~~~~~p 280 (406)
+.+|||++.|+|..++.-.++++++.+.+ .++.+.++..... ......+..... ....+ +....... .
T Consensus 83 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~ 155 (234)
T cd06421 83 TTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYG-VIQPGRDR------W 155 (234)
T ss_pred CCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHH-HHHHHHhh------c
Confidence 47999999999999999999999999887 6677776543111 000000000000 00000 00000000 1
Q ss_pred CCcceEEEeeccccHHHHHHHhhhhcCCCcceehhhhhchhhhcCCCCeEEEEeeeeEEeec
Q 015489 281 PCAAFVEIMATVFSREAWRCVWYMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDAQWIVHQG 342 (406)
Q Consensus 281 pcTgFVEiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~~~~C~~~~~~kiGVVDa~~VvH~g 342 (406)
++. ++=.+.=+|+|++++.+-.+- + ...+-|+.+..-+.....+|..++...+.|..
T Consensus 156 ~~~-~~~g~~~~~r~~~~~~ig~~~--~--~~~~eD~~l~~r~~~~g~~i~~~~~~~~~~~~ 212 (234)
T cd06421 156 GAA-FCCGSGAVVRREALDEIGGFP--T--DSVTEDLATSLRLHAKGWRSVYVPEPLAAGLA 212 (234)
T ss_pred CCc-eecCceeeEeHHHHHHhCCCC--c--cceeccHHHHHHHHHcCceEEEecCccccccC
Confidence 111 121234578999999876542 2 24577877764443345688888887777753
No 25
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=61.44 E-value=4 Score=37.04 Aligned_cols=39 Identities=5% Similarity=-0.033 Sum_probs=30.9
Q ss_pred CccEEEEecCcccCCCCChHHHHHHHHHhCCcccCCCcc
Q 015489 207 SYDYIFIWDEDLGVENFNGEEYIKLVRKHGLEISQPGLE 245 (406)
Q Consensus 207 ~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd 245 (406)
..|||++.|+|...+...+.++++.++..+..+.++...
T Consensus 109 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~ 147 (251)
T cd06439 109 TGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELV 147 (251)
T ss_pred CCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEE
Confidence 469999999999999877888888886666666665554
No 26
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=59.00 E-value=7.4 Score=38.88 Aligned_cols=189 Identities=14% Similarity=0.172 Sum_probs=94.4
Q ss_pred CceEEEEEeccccccchhHHhhccc------------cCcEEEEEEECCCCCcccc--cccccc------eEEEE--eec
Q 015489 132 PKYLVTFTVGFDLKHNIDAAVKKFS------------ENFTIMLFHYDGRTSDWEE--FEWSKR------AIHVS--ARK 189 (406)
Q Consensus 132 ~k~Lla~~VG~~qk~~vd~~v~kf~------------~nF~vmLFhYDG~~~~W~d--~eWs~~------aiHv~--a~k 189 (406)
++--+++|+ ++...++..+++... .++.|+ +.-||+.|+=.+ -++.++ .+++. ..+
T Consensus 70 ~~isVVIP~-yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EII-VVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~N 147 (333)
T PTZ00260 70 VDLSIVIPA-YNEEDRLPKMLKETIKYLESRSRKDPKFKYEII-IVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLRN 147 (333)
T ss_pred eEEEEEEee-CCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEE-EEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCCC
Confidence 344555554 555555655554431 256655 668898875322 112111 14443 345
Q ss_pred cccccccccccCcccccCccEEEEecCcccCCCCChHHHHHHHHH---hCCcccCCCccC--CC-Cc-ceeeeeecCCcc
Q 015489 190 QTKWWYAKRFLHPDIVASYDYIFIWDEDLGVENFNGEEYIKLVRK---HGLEISQPGLEP--NG-WL-TWQMTKRRNDTE 262 (406)
Q Consensus 190 qtKWw~akRFLHPdiva~YDYIflwDDDL~vd~f~i~ry~~Ivr~---~gLeISQPALd~--~S-~i-sh~iT~R~~~~~ 262 (406)
++|-.-.+.=+. .+..|||++.|.|...+..++.++++.+++ .+.++..-.-.. ++ .. ..+...+--...
T Consensus 148 ~G~~~A~~~Gi~---~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~r~~~~~~ 224 (333)
T PTZ00260 148 KGKGGAVRIGML---ASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWYRNILMYG 224 (333)
T ss_pred CChHHHHHHHHH---HccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccccCcHHHHHHHHH
Confidence 666543332221 257899999999999999999999998875 444443332211 01 00 000000000001
Q ss_pred eeeeeccccCccCCCCCCCCcceEEEeeccccHHHHHHHhhhhcCCCcceehhhhhchhhhcCCCCeEEEEeee
Q 015489 263 VHTQTEEREGWCAETHEPPCAAFVEIMATVFSREAWRCVWYMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDAQ 336 (406)
Q Consensus 263 vHr~~~~~~g~C~~~~~ppcTgFVEiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~~~~C~~~~~~kiGVVDa~ 336 (406)
+|.-. .-.|...-.-..+||- +|+|++++-+... -...+|+.|.-+...+...+.+|.-|--.
T Consensus 225 ~~~l~---~~~~~~~i~D~~~Gfk-----~~~r~~~~~i~~~---~~~~~~~fd~Ell~~a~~~g~~I~EvPv~ 287 (333)
T PTZ00260 225 FHFIV---NTICGTNLKDTQCGFK-----LFTRETARIIFPS---LHLERWAFDIEIVMIAQKLNLPIAEVPVN 287 (333)
T ss_pred HHHHH---HHHcCCCcccCCCCeE-----EEeHHHHHHHhhh---ccccCccchHHHHHHHHHcCCCEEEEcee
Confidence 11000 0011111111122333 7899999876432 22358888887776766444455544433
No 27
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=57.68 E-value=3 Score=40.35 Aligned_cols=189 Identities=16% Similarity=0.117 Sum_probs=79.6
Q ss_pred eEEEEEeccccccchhHHhhccccCcEEEEE-EECCCCCcccccccccc-eEEEEeeccc-----cccccc-ccc-Cccc
Q 015489 134 YLVTFTVGFDLKHNIDAAVKKFSENFTIMLF-HYDGRTSDWEEFEWSKR-AIHVSARKQT-----KWWYAK-RFL-HPDI 204 (406)
Q Consensus 134 ~Lla~~VG~~qk~~vd~~v~kf~~nF~vmLF-hYDG~~~~W~d~eWs~~-aiHv~a~kqt-----KWw~ak-RFL-HPdi 204 (406)
++.++|....-+..+..+.+-|....+-.+| .-|..-.+.. .. .+|+...+.. |+...+ .+. +-.+
T Consensus 9 ~i~V~T~~k~h~tR~~~I~~TW~~~~~~~~~ifsd~~d~~l~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~y~~~~ 83 (252)
T PF02434_consen 9 FIAVKTTKKFHKTRAPAIKQTWAKRCNKQTFIFSDAEDPSLP-----TVTGVHLVNPNCDAGHCRKTLSCKMAYEYDHFL 83 (252)
T ss_dssp EEEEE--GGGTTTTHHHHHHTGGGGSGGGEEEEESS--HHHH-----HHHGGGEEE-------------HHHHHHHHHHH
T ss_pred EEEEEeCHHHHHHHHHHHHHHHHhhcCCceEEecCccccccc-----cccccccccCCCcchhhHHHHHHHHHHHHHhhh
Confidence 4556666666678899999999744443344 3344222222 22 2233322211 122122 111 1123
Q ss_pred ccCccEEEEecCcccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCcceeeeeccccCccCCCCCCCCcc
Q 015489 205 VASYDYIFIWDEDLGVENFNGEEYIKLVRKHGLEISQPGLEPNGWLTWQMTKRRNDTEVHTQTEEREGWCAETHEPPCAA 284 (406)
Q Consensus 205 va~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ppcTg 284 (406)
-..+||+++.|||..| +++++.++..+|+- +||-.=...+..++++.-.+... . .....+-.
T Consensus 84 ~~~~~Wf~~~DDDtyv---~~~~L~~~L~~~~~--~~~~yiG~~~~~~~~~~~~~~~~-~------------~~~~~~~~ 145 (252)
T PF02434_consen 84 NSDKDWFCFADDDTYV---NVENLRRLLSKYDP--SEPIYIGRPSGDRPIEIIHRFNP-N------------KSKDSGFW 145 (252)
T ss_dssp HHT-SEEEEEETTEEE----HHHHHHHHTTS-T--TS--EEE-EE-----------------------------------
T ss_pred cCCceEEEEEeCCcee---cHHHHHHHHhhCCC--ccCEEeeeeccCccceeeccccc-c------------ccCcCceE
Confidence 3578999999999987 67777777766542 33322111111122222100000 0 00111223
Q ss_pred eEEEee-ccccHHHHHHH--hh----hhcCCCcceehhhhhchhhhcCCCCeEEEEeeeeEEeecCCCCC
Q 015489 285 FVEIMA-TVFSREAWRCV--WY----MIQNDLVHGWGLDFALRKCVEPAHEKIGVVDAQWIVHQGVPSLG 347 (406)
Q Consensus 285 FVEiMA-PVFSR~Awrcv--w~----miqNDLvhGWGLDf~~~~C~~~~~~kiGVVDa~~VvH~g~PtLg 347 (406)
|.-..| -|+||.+.+.+ |. +.+.+..-.+.=|..+++|++.- -+|-.+++ .-.|.-+|.|.
T Consensus 146 f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~-lgv~lt~s-~~fhs~~~~l~ 213 (252)
T PF02434_consen 146 FATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENL-LGVPLTHS-PLFHSHLENLQ 213 (252)
T ss_dssp EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHT-T---EEE--TT---SSS-GG
T ss_pred eeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhc-CCcceeec-hhhcccCcccc
Confidence 444444 47899998766 22 22223333567799999999831 34444554 55677788864
No 28
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=54.55 E-value=7.1 Score=35.09 Aligned_cols=123 Identities=12% Similarity=-0.094 Sum_probs=63.1
Q ss_pred CccEEEEecCcccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCcceeeeeccccCccCCCCCCCCcceE
Q 015489 207 SYDYIFIWDEDLGVENFNGEEYIKLVRKHGLEISQPGLEPNGWLTWQMTKRRNDTEVHTQTEEREGWCAETHEPPCAAFV 286 (406)
Q Consensus 207 ~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ppcTgFV 286 (406)
.||||++.|+|..++.-.+.++++.++..+..+.++.......-...+.... ...... .......|. +...++ ++
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~--~~~~~~-~~ 158 (236)
T cd06435 84 DAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAPQDYRDGEESLFKRMC-YAEYKG-FFDIGMVSR--NERNAI-IQ 158 (236)
T ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecCccccCCCccHHHHHH-hHHHHH-HHHHHhccc--cccCce-EE
Confidence 4999999999999999888888888876677766653321111000010000 000000 000000010 001111 22
Q ss_pred EEeeccccHHHHHHHhhhhcCCCcceehhhhhchhhhcCCCCeEEEEeeeeE
Q 015489 287 EIMATVFSREAWRCVWYMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDAQWI 338 (406)
Q Consensus 287 EiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~~~~C~~~~~~kiGVVDa~~V 338 (406)
=..+-+|+|++++.+=.+ ..+. -+=|+.+..-+.....++..++...+
T Consensus 159 ~g~~~~~rr~~~~~iGgf-~~~~---~~eD~dl~~r~~~~G~~~~~~~~~~~ 206 (236)
T cd06435 159 HGTMCLIRRSALDDVGGW-DEWC---ITEDSELGLRMHEAGYIGVYVAQSYG 206 (236)
T ss_pred ecceEEEEHHHHHHhCCC-CCcc---ccchHHHHHHHHHCCcEEEEcchhhc
Confidence 222347899999987433 2222 24477665555445678888876444
No 29
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=53.35 E-value=5.9 Score=36.08 Aligned_cols=124 Identities=21% Similarity=0.170 Sum_probs=69.9
Q ss_pred cCccEEEEecCcccCCCCChHHHHHHHHH--hCCcccCCCccCCCCc-ceeeeeecCCcceeeeeccccCccCCCCCCCC
Q 015489 206 ASYDYIFIWDEDLGVENFNGEEYIKLVRK--HGLEISQPGLEPNGWL-TWQMTKRRNDTEVHTQTEEREGWCAETHEPPC 282 (406)
Q Consensus 206 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~--~gLeISQPALd~~S~i-sh~iT~R~~~~~vHr~~~~~~g~C~~~~~ppc 282 (406)
+.||||++.|+|+.++.-.+.++..-... .|+-=+.|-..+..++ +.- ..-....|-.+.- . -.=
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~~~~~l---~~~~~~~~~~~~~-------a--~~~ 97 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARGFWSRL---EAAFFNFLPGVLQ-------A--LGG 97 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcCHHHHH---HHHHHhHHHHHHH-------H--hcC
Confidence 79999999999999987777777765543 3332222222222111 000 0000001100000 0 011
Q ss_pred cceEEEeeccccHHHHHHHhhhhcCCCcceehhhhhchhhhcCCCCeEEEEeeeeEEeecCC
Q 015489 283 AAFVEIMATVFSREAWRCVWYMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDAQWIVHQGVP 344 (406)
Q Consensus 283 TgFVEiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~~~~C~~~~~~kiGVVDa~~VvH~g~P 344 (406)
+.|+=.|+=.|+|++++.+=- .+.+.+...=||.++..+.....+|...... |+|+.+|
T Consensus 98 ~~~~~G~~m~~rr~~L~~~GG--~~~l~~~ladD~~l~~~~~~~G~~v~~~~~~-v~~~~~~ 156 (175)
T PF13506_consen 98 APFAWGGSMAFRREALEEIGG--FEALADYLADDYALGRRLRARGYRVVLSPYP-VVQTSVP 156 (175)
T ss_pred CCceecceeeeEHHHHHHccc--HHHHhhhhhHHHHHHHHHHHCCCeEEEcchh-eeecccC
Confidence 567778888999999986521 1344456667999999888777788776643 4454333
No 30
>PRK01844 hypothetical protein; Provisional
Probab=52.74 E-value=8.8 Score=31.82 Aligned_cols=16 Identities=38% Similarity=0.831 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhhheee
Q 015489 19 MITTFVGVAVGFFLGI 34 (406)
Q Consensus 19 ~~~~~~~~~~gf~~g~ 34 (406)
|++.++|++.|||++-
T Consensus 11 I~~li~G~~~Gff~ar 26 (72)
T PRK01844 11 VVALVAGVALGFFIAR 26 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677788888888763
No 31
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=51.98 E-value=30 Score=30.43 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=30.3
Q ss_pred cCccEEEEecCcccCCCCChHHHHHHHHHhCCcccCCCcc
Q 015489 206 ASYDYIFIWDEDLGVENFNGEEYIKLVRKHGLEISQPGLE 245 (406)
Q Consensus 206 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd 245 (406)
+.+|||++.|+|..++...+++++......+..++.+...
T Consensus 71 a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 110 (221)
T cd02522 71 ARGDWLLFLHADTRLPPDWDAAIIETLRADGAVAGAFRLR 110 (221)
T ss_pred ccCCEEEEEcCCCCCChhHHHHHHHHhhcCCcEEEEEEee
Confidence 4589999999999998888888876666666555554443
No 32
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=51.38 E-value=38 Score=28.87 Aligned_cols=26 Identities=27% Similarity=0.155 Sum_probs=19.9
Q ss_pred cCccEEEEecCcccCCCCChHHHHHH
Q 015489 206 ASYDYIFIWDEDLGVENFNGEEYIKL 231 (406)
Q Consensus 206 a~YDYIflwDDDL~vd~f~i~ry~~I 231 (406)
+.+|||+++|+|..++...+.+.++.
T Consensus 78 a~g~~i~~lD~D~~~~~~~l~~~~~~ 103 (182)
T cd06420 78 AKGDYLIFIDGDCIPHPDFIADHIEL 103 (182)
T ss_pred hcCCEEEEEcCCcccCHHHHHHHHHH
Confidence 57899999999998866555555544
No 33
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=44.97 E-value=81 Score=31.35 Aligned_cols=216 Identities=14% Similarity=0.083 Sum_probs=102.4
Q ss_pred CceEEEEEeccccccchhHHhhccc------cCcEEEEEEECCCCCccccc--ccccceEEE------Eeeccccccccc
Q 015489 132 PKYLVTFTVGFDLKHNIDAAVKKFS------ENFTIMLFHYDGRTSDWEEF--EWSKRAIHV------SARKQTKWWYAK 197 (406)
Q Consensus 132 ~k~Lla~~VG~~qk~~vd~~v~kf~------~nF~vmLFhYDG~~~~W~d~--eWs~~aiHv------~a~kqtKWw~ak 197 (406)
++..+++++ ++...++.++++... ..+.|+ +.-||+.|+=.+. ++..+.++. ...+.+|=--.+
T Consensus 31 ~~vSVVIPa-yNee~~I~~~l~sl~~~~~~~~~~EII-VVDDgStD~T~~ia~~~~~~v~~~~~~~~~~~~n~Gkg~A~~ 108 (306)
T PRK13915 31 RTVSVVLPA-LNEEETVGKVVDSIRPLLMEPLVDELI-VIDSGSTDATAERAAAAGARVVSREEILPELPPRPGKGEALW 108 (306)
T ss_pred CCEEEEEec-CCcHHHHHHHHHHHHHHhccCCCcEEE-EEeCCCccHHHHHHHHhcchhhcchhhhhccccCCCHHHHHH
Confidence 455555554 455556666555552 235554 6778988752211 111111111 122333321111
Q ss_pred cccCcccccCccEEEEecCccc-CCCCChHHHHHHHH-HhCCcccCCCccCCCCcceeeeeecCCcceeeeeccccC-cc
Q 015489 198 RFLHPDIVASYDYIFIWDEDLG-VENFNGEEYIKLVR-KHGLEISQPGLEPNGWLTWQMTKRRNDTEVHTQTEEREG-WC 274 (406)
Q Consensus 198 RFLHPdiva~YDYIflwDDDL~-vd~f~i~ry~~Ivr-~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g-~C 274 (406)
+-+ -.+..|||.+.|.|.. .+...+.++++-+. ..+.++.................. .+..+-+.....-- .+
T Consensus 109 ~g~---~~a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~~~r~~~~~~~~~~~-~~gr~~~~~~~~l~~~~ 184 (306)
T PRK13915 109 RSL---AATTGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAFYRRPLRVSGGVDAT-GGGRVTELVARPLLNLL 184 (306)
T ss_pred HHH---HhcCCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEEeccccccccccCcC-CCCchHHHHHHHHHHHH
Confidence 111 1256899999999996 78888888888765 345665543221100000000000 00000000000000 00
Q ss_pred CC---CCCCCCcceEEEeeccccHHHHHHHhhhhcCCCcceehhhhhc-hhhh-cCCCCeEEEEeeeeEEeecCCCCCCC
Q 015489 275 AE---THEPPCAAFVEIMATVFSREAWRCVWYMIQNDLVHGWGLDFAL-RKCV-EPAHEKIGVVDAQWIVHQGVPSLGNQ 349 (406)
Q Consensus 275 ~~---~~~ppcTgFVEiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~~-~~C~-~~~~~kiGVVDa~~VvH~g~PtLg~~ 349 (406)
.. .-..|.+||. +|+|++++.+- ...|||+|... -.++ ...-.+|+-||-....|.. |
T Consensus 185 ~~~l~~i~dp~sG~~-----a~rr~~l~~l~------~~~~yg~e~~~l~~~~~~~g~~~i~~V~l~~r~h~~------~ 247 (306)
T PRK13915 185 RPELAGFVQPLGGEY-----AGRRELLESLP------FVPGYGVEIGLLIDTLDRLGLDAIAQVDLGVRAHRN------Q 247 (306)
T ss_pred HHhhhcccCcchHhH-----HHHHHHHHhCC------CCCCCeehHHHHHHHHHHhCcCceEEEEecccccCC------C
Confidence 00 0112344542 58999987652 23689988433 2232 2122388889977777742 1
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHHH
Q 015489 350 GQPHDGRAPWEAVRERCKNEWEMFKDRMT 378 (406)
Q Consensus 350 g~~~~~~~~~~~vR~r~~~E~~~F~~R~~ 378 (406)
+...+.+-..+=+..|.+|+.
T Consensus 248 --------~~~~~~~m~~~i~~~~~~~~~ 268 (306)
T PRK13915 248 --------PLRALGRMARQIIATALSRLG 268 (306)
T ss_pred --------CHHHHHHHHHHHHHHHHHHHh
Confidence 123444556666777877774
No 34
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=44.43 E-value=44 Score=33.31 Aligned_cols=102 Identities=15% Similarity=0.205 Sum_probs=62.5
Q ss_pred CceEEEEEeccccccchhHHhhcc-------ccCcEEEEEEECCCCCccccc--cc----ccceEEE-Eeeccccccccc
Q 015489 132 PKYLVTFTVGFDLKHNIDAAVKKF-------SENFTIMLFHYDGRTSDWEEF--EW----SKRAIHV-SARKQTKWWYAK 197 (406)
Q Consensus 132 ~k~Lla~~VG~~qk~~vd~~v~kf-------~~nF~vmLFhYDG~~~~W~d~--eW----s~~aiHv-~a~kqtKWw~ak 197 (406)
++.-+++|+ +++..++.++++.. ..+|.|+ +.=||+.|+-.+. ++ ..+.+++ ..++.+|..-.+
T Consensus 6 ~~vSVVIP~-yNE~~~i~~~l~~l~~~~~~~~~~~EII-vVDDgS~D~T~~il~~~~~~~~~~v~~i~~~~n~G~~~A~~ 83 (325)
T PRK10714 6 KKVSVVIPV-YNEQESLPELIRRTTAACESLGKEYEIL-LIDDGSSDNSAEMLVEAAQAPDSHIVAILLNRNYGQHSAIM 83 (325)
T ss_pred CeEEEEEcc-cCchhhHHHHHHHHHHHHHhCCCCEEEE-EEeCCCCCcHHHHHHHHHhhcCCcEEEEEeCCCCCHHHHHH
Confidence 345555554 55656666655543 2467765 6689998875442 12 1223322 345555544333
Q ss_pred cccCcccccCccEEEEecCcccCCCCChHHHHHHHHHhCCcc
Q 015489 198 RFLHPDIVASYDYIFIWDEDLGVENFNGEEYIKLVRKHGLEI 239 (406)
Q Consensus 198 RFLHPdiva~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeI 239 (406)
.=+ -.+.+|||++.|.|+..+...+.++++.++ .|.++
T Consensus 84 ~G~---~~A~gd~vv~~DaD~q~~p~~i~~l~~~~~-~~~Dv 121 (325)
T PRK10714 84 AGF---SHVTGDLIITLDADLQNPPEEIPRLVAKAD-EGYDV 121 (325)
T ss_pred HHH---HhCCCCEEEEECCCCCCCHHHHHHHHHHHH-hhCCE
Confidence 222 125789999999999999999999999875 34443
No 35
>PF11688 DUF3285: Protein of unknown function (DUF3285); InterPro: IPR021702 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=43.47 E-value=6.4 Score=29.91 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=22.4
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHhhheeeec
Q 015489 6 RSATIKPAETMKLMITTFVGVAVGFFLGICF 36 (406)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~gf~~g~s~ 36 (406)
|...||-..+++.+..+.+| ++||+||+++
T Consensus 13 RNMVRKg~~SL~HF~LT~~g-ll~~lv~la~ 42 (45)
T PF11688_consen 13 RNMVRKGGTSLFHFGLTAVG-LLGFLVGLAY 42 (45)
T ss_pred HHHHHccCcchhHHHHHHHH-HHHHHHHHHH
Confidence 44567888888877777666 5799999874
No 36
>PRK00523 hypothetical protein; Provisional
Probab=42.12 E-value=16 Score=30.30 Aligned_cols=16 Identities=25% Similarity=0.544 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhhheee
Q 015489 19 MITTFVGVAVGFFLGI 34 (406)
Q Consensus 19 ~~~~~~~~~~gf~~g~ 34 (406)
|+..++|++.|||++-
T Consensus 12 i~~li~G~~~Gffiar 27 (72)
T PRK00523 12 IPLLIVGGIIGYFVSK 27 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5567778888888763
No 37
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=41.55 E-value=22 Score=27.84 Aligned_cols=36 Identities=17% Similarity=0.044 Sum_probs=24.3
Q ss_pred CccEEEEecCcccCCCCChHHH-HHHHHHhCCcccCC
Q 015489 207 SYDYIFIWDEDLGVENFNGEEY-IKLVRKHGLEISQP 242 (406)
Q Consensus 207 ~YDYIflwDDDL~vd~f~i~ry-~~Ivr~~gLeISQP 242 (406)
.+||+++.|+|..++...+.++ ....+..+..+.++
T Consensus 77 ~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (156)
T cd00761 77 RGEYILFLDADDLLLPDWLERLVAELLADPEADAVGG 113 (156)
T ss_pred cCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEec
Confidence 6999999999999888777776 22233334444443
No 38
>PRK11204 N-glycosyltransferase; Provisional
Probab=41.28 E-value=89 Score=31.39 Aligned_cols=196 Identities=13% Similarity=0.098 Sum_probs=93.0
Q ss_pred CceEEEEEeccccccchhHHhhccc----cCcEEEEEEECCCCCccccc--ccccc--eEEEE--eeccccccccccccC
Q 015489 132 PKYLVTFTVGFDLKHNIDAAVKKFS----ENFTIMLFHYDGRTSDWEEF--EWSKR--AIHVS--ARKQTKWWYAKRFLH 201 (406)
Q Consensus 132 ~k~Lla~~VG~~qk~~vd~~v~kf~----~nF~vmLFhYDG~~~~W~d~--eWs~~--aiHv~--a~kqtKWw~akRFLH 201 (406)
++.-+.+++ ++..+.+.++++-.. .+|+|++ -=||+.|+=.+. ++.++ -+++. ..+.+|=.-.+.-+
T Consensus 54 p~vsViIp~-yne~~~i~~~l~sl~~q~yp~~eiiV-vdD~s~d~t~~~l~~~~~~~~~v~~i~~~~n~Gka~aln~g~- 130 (420)
T PRK11204 54 PGVSILVPC-YNEGENVEETISHLLALRYPNYEVIA-INDGSSDNTGEILDRLAAQIPRLRVIHLAENQGKANALNTGA- 130 (420)
T ss_pred CCEEEEEec-CCCHHHHHHHHHHHHhCCCCCeEEEE-EECCCCccHHHHHHHHHHhCCcEEEEEcCCCCCHHHHHHHHH-
Confidence 456666665 344445555554432 3677764 456766543221 11111 12222 23444432222222
Q ss_pred cccccCccEEEEecCcccCCCCChHHHHHHHHH-hCCcccCC--CccCCC-CcceeeeeecCC-cceeeeeccccCccCC
Q 015489 202 PDIVASYDYIFIWDEDLGVENFNGEEYIKLVRK-HGLEISQP--GLEPNG-WLTWQMTKRRND-TEVHTQTEEREGWCAE 276 (406)
Q Consensus 202 Pdiva~YDYIflwDDDL~vd~f~i~ry~~Ivr~-~gLeISQP--ALd~~S-~ish~iT~R~~~-~~vHr~~~~~~g~C~~ 276 (406)
-.+.||||++.|.|..++...++++.+.+++ .+..+.|. ...... ...+..+..-.. ..+-++.....|
T Consensus 131 --~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 204 (420)
T PRK11204 131 --AAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRIRNRSTLLGRIQVGEFSSIIGLIKRAQRVYG---- 204 (420)
T ss_pred --HHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCceeccchhHHHHHHHHHHHHhhhHHHHHHHHhC----
Confidence 1267999999999999988888888887753 33444432 221110 000000000000 000000000000
Q ss_pred CCCCCCcceEEEeeccccHHHHHHHhhhhcCCCcceehhhhhchhhhcCCCCeEEEEeeeeEEeecCCC
Q 015489 277 THEPPCAAFVEIMATVFSREAWRCVWYMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDAQWIVHQGVPS 345 (406)
Q Consensus 277 ~~~ppcTgFVEiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~~~~C~~~~~~kiGVVDa~~VvH~g~Pt 345 (406)
. ...+=.++-+|+|++++.+=.+ ..+.. +=|+.+..-+.....++..+....+.|..-++
T Consensus 205 ---~--~~~~~G~~~~~rr~~l~~vgg~-~~~~~---~ED~~l~~rl~~~G~~i~~~p~~~~~~~~p~t 264 (420)
T PRK11204 205 ---R--VFTVSGVITAFRKSALHEVGYW-STDMI---TEDIDISWKLQLRGWDIRYEPRALCWILMPET 264 (420)
T ss_pred ---C--ceEecceeeeeeHHHHHHhCCC-CCCcc---cchHHHHHHHHHcCCeEEeccccEEEeECccc
Confidence 0 0112233457899999876332 12222 34666654554456788888887777753333
No 39
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=40.53 E-value=17 Score=29.21 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=25.8
Q ss_pred CccEEEEecCcccCCCCChHHH-HHHHHHhCCcccCCCc
Q 015489 207 SYDYIFIWDEDLGVENFNGEEY-IKLVRKHGLEISQPGL 244 (406)
Q Consensus 207 ~YDYIflwDDDL~vd~f~i~ry-~~Ivr~~gLeISQPAL 244 (406)
.+|||++.|+|..++...+.++ ..+.+..+..+..+..
T Consensus 78 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~ 116 (180)
T cd06423 78 KGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRV 116 (180)
T ss_pred CCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeE
Confidence 7999999999998877667766 3333444444444444
No 40
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=40.03 E-value=17 Score=32.23 Aligned_cols=18 Identities=33% Similarity=0.707 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhhheeee
Q 015489 18 LMITTFVGVAVGFFLGIC 35 (406)
Q Consensus 18 ~~~~~~~~~~~gf~~g~s 35 (406)
.|+..++|+++|||++-.
T Consensus 2 ~~i~lvvG~iiG~~~~r~ 19 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRL 19 (128)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 366777777777777643
No 41
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=39.80 E-value=15 Score=32.26 Aligned_cols=30 Identities=37% Similarity=0.730 Sum_probs=20.2
Q ss_pred CCCCchhhH---HHHHHHH--HHHHhhheeeeccc
Q 015489 9 TIKPAETMK---LMITTFV--GVAVGFFLGICFPA 38 (406)
Q Consensus 9 ~~~~~~~~~---~~~~~~~--~~~~gf~~g~s~p~ 38 (406)
.-||+.+.+ +|+.+++ -+++|+|+|++|=+
T Consensus 8 ~~KPsGsL~PWeIfLItLasVvvavGl~aGLfFcv 42 (106)
T PF14654_consen 8 EVKPSGSLKPWEIFLITLASVVVAVGLFAGLFFCV 42 (106)
T ss_pred ccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777766 4444444 46789999999865
No 42
>PRK11677 hypothetical protein; Provisional
Probab=39.60 E-value=18 Score=32.91 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhhheeee
Q 015489 19 MITTFVGVAVGFFLGIC 35 (406)
Q Consensus 19 ~~~~~~~~~~gf~~g~s 35 (406)
++..++|+++|||+|-.
T Consensus 7 ~i~livG~iiG~~~~R~ 23 (134)
T PRK11677 7 LIGLVVGIIIGAVAMRF 23 (134)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 44555666666666543
No 43
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=37.67 E-value=26 Score=30.41 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=29.2
Q ss_pred cCccEEEEecCcccCCCCChHHHHHHH-HHhCCcccCC
Q 015489 206 ASYDYIFIWDEDLGVENFNGEEYIKLV-RKHGLEISQP 242 (406)
Q Consensus 206 a~YDYIflwDDDL~vd~f~i~ry~~Iv-r~~gLeISQP 242 (406)
+.+|||++.|+|..++.-.++++++.+ +..+..+..+
T Consensus 82 a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~ 119 (202)
T cd04184 82 ATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYS 119 (202)
T ss_pred hcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEc
Confidence 568999999999999888888888887 4455555543
No 44
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=36.40 E-value=28 Score=30.59 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=27.9
Q ss_pred cCccEEEEecCcccCCCCChHHHHHHHHHhCCcccCC
Q 015489 206 ASYDYIFIWDEDLGVENFNGEEYIKLVRKHGLEISQP 242 (406)
Q Consensus 206 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQP 242 (406)
+.+|||++.|+|..++.-.++++++.+.+.+-...+.
T Consensus 81 ~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~ 117 (229)
T cd04192 81 AKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAG 117 (229)
T ss_pred hcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEee
Confidence 5699999999999998877888887665555443333
No 45
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=35.78 E-value=50 Score=32.59 Aligned_cols=161 Identities=17% Similarity=0.238 Sum_probs=95.1
Q ss_pred CceEEEEEeccccccchhHH----hhccc---cCcEEEEEEECCCCCcccc----cc--cccceEEEEeecccccccccc
Q 015489 132 PKYLVTFTVGFDLKHNIDAA----VKKFS---ENFTIMLFHYDGRTSDWEE----FE--WSKRAIHVSARKQTKWWYAKR 198 (406)
Q Consensus 132 ~k~Lla~~VG~~qk~~vd~~----v~kf~---~nF~vmLFhYDG~~~~W~d----~e--Ws~~aiHv~a~kqtKWw~akR 198 (406)
+||-+.+|. ++.|.|+--+ ++-++ .+|.|+ |.=|++.|.=.+ +. +-..-|-+. .+..|.=.--.
T Consensus 3 ~kYsvilPt-YnEk~Nlpi~~~li~~~~~e~~~~~eiI-ivDD~SpDGt~~~a~~L~k~yg~d~i~l~-pR~~klGLgtA 79 (238)
T KOG2978|consen 3 IKYSVILPT-YNEKENLPIITRLIAKYMSEEGKKYEII-IVDDASPDGTQEVAKALQKIYGEDNILLK-PRTKKLGLGTA 79 (238)
T ss_pred cceeEEecc-ccCCCCCeeeHHHHHhhhhhhcCceEEE-EEeCCCCCccHHHHHHHHHHhCCCcEEEE-eccCcccchHH
Confidence 467777775 6677775422 22233 478888 556777665432 22 222333332 22335545566
Q ss_pred ccCcccccCccEEEEecCcccCCCCChHHHHHHHHHhCCcccCCCccC-CCCc-ceeeeeecCCcceeeeeccccCccCC
Q 015489 199 FLHPDIVASYDYIFIWDEDLGVENFNGEEYIKLVRKHGLEISQPGLEP-NGWL-TWQMTKRRNDTEVHTQTEEREGWCAE 276 (406)
Q Consensus 199 FLHPdiva~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~-~S~i-sh~iT~R~~~~~vHr~~~~~~g~C~~ 276 (406)
++|.=--+.-||+.+.|-||.-+.-.+-++|++.++++++|--=.--. +.++ -|++-++-=..-.+. -...-.+
T Consensus 80 y~hgl~~a~g~fiviMDaDlsHhPk~ipe~i~lq~~~~~div~GTRYa~~ggV~gW~mkRk~IS~gAn~----la~~ll~ 155 (238)
T KOG2978|consen 80 YIHGLKHATGDFIVIMDADLSHHPKFIPEFIRLQKEGNYDIVLGTRYAGGGGVYGWDMKRKIISRGANF----LARILLN 155 (238)
T ss_pred HHhhhhhccCCeEEEEeCccCCCchhHHHHHHHhhccCcceeeeeeEcCCCceecchhhHHHHhhhhHH----HHHHhcc
Confidence 777777788999999999999999999999999999999886433222 2233 466654421110000 0000113
Q ss_pred CCCCCCcceEEEeeccccHHHHHHHhh
Q 015489 277 THEPPCAAFVEIMATVFSREAWRCVWY 303 (406)
Q Consensus 277 ~~~ppcTgFVEiMAPVFSR~Awrcvw~ 303 (406)
+..-+.||+.- ...++.++|+..
T Consensus 156 ~~~sdltGsFr----Lykk~vl~~li~ 178 (238)
T KOG2978|consen 156 PGVSDLTGSFR----LYKKEVLEKLIE 178 (238)
T ss_pred CCCccCcceee----eehHHHHHhhHH
Confidence 44556777763 446777777644
No 46
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=32.49 E-value=42 Score=30.76 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=29.2
Q ss_pred cCccEEEEecCcccCCCCChHHHHHHHHHh--CCcccCCC
Q 015489 206 ASYDYIFIWDEDLGVENFNGEEYIKLVRKH--GLEISQPG 243 (406)
Q Consensus 206 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~--gLeISQPA 243 (406)
+.+|||++.|.|..++.-.+.+.++.+.+. ++-+.|+-
T Consensus 83 a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~ 122 (241)
T cd06427 83 ARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAP 122 (241)
T ss_pred cCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCc
Confidence 578999999999999988888888877643 34444543
No 47
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=32.46 E-value=21 Score=33.65 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhhheeeec
Q 015489 19 MITTFVGVAVGFFLGICF 36 (406)
Q Consensus 19 ~~~~~~~~~~gf~~g~s~ 36 (406)
|+++++|+++||++|..+
T Consensus 3 ii~~i~~~~vG~~~G~~~ 20 (201)
T PF12072_consen 3 IIIAIVALIVGIGIGYLV 20 (201)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 667777777777777655
No 48
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=31.86 E-value=1.2e+02 Score=28.76 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=22.7
Q ss_pred cCccEEEEecCcccCCCCC-hHHHHHHH-HHhC
Q 015489 206 ASYDYIFIWDEDLGVENFN-GEEYIKLV-RKHG 236 (406)
Q Consensus 206 a~YDYIflwDDDL~vd~f~-i~ry~~Iv-r~~g 236 (406)
+.++|+++..||+.+.+.+ +.+.+++. +...
T Consensus 53 a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~ 85 (217)
T PF13712_consen 53 AKAKYLVFLHQDVFIINENWLEDILEIFEEDPN 85 (217)
T ss_dssp --SSEEEEEETTEE-SSHHHHHHHHHHHHH-TT
T ss_pred CCCCEEEEEeCCeEEcchhHHHHHHHHHhhCCC
Confidence 6899999999999998766 78888888 3334
No 49
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=29.49 E-value=51 Score=33.29 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=29.7
Q ss_pred CccEEEEecCcccCCCCChHHHHHHHHHhCCccc
Q 015489 207 SYDYIFIWDEDLGVENFNGEEYIKLVRKHGLEIS 240 (406)
Q Consensus 207 ~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeIS 240 (406)
++|||++.|.|..++...++++++.+++.+..+.
T Consensus 133 ~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~v 166 (384)
T TIGR03469 133 PADYLLLTDADIAHGPDNLARLVARARAEGLDLV 166 (384)
T ss_pred CCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEE
Confidence 3999999999999999889999999988776654
No 50
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=28.62 E-value=22 Score=34.49 Aligned_cols=59 Identities=17% Similarity=0.239 Sum_probs=38.6
Q ss_pred cccccceEEEEeeccccccccccccCcccccCccEEEEecCcccCCCCChHHHHHHHHHh
Q 015489 176 FEWSKRAIHVSARKQTKWWYAKRFLHPDIVASYDYIFIWDEDLGVENFNGEEYIKLVRKH 235 (406)
Q Consensus 176 ~eWs~~aiHv~a~kqtKWw~akRFLHPdiva~YDYIflwDDDL~vd~f~i~ry~~Ivr~~ 235 (406)
.+|....+-|....+++=-.-.||+-.+.+ .=|.|+..|||+.++..+++.=|+.-+++
T Consensus 45 ~~~~~~~vpV~~~~~~~nsLnnRF~p~~~i-~T~AVl~~DDDv~~~~~~l~faF~~W~~~ 103 (247)
T PF09258_consen 45 SKWPSTGVPVRVVRSSRNSLNNRFLPDPEI-ETDAVLSLDDDVMLSCDELEFAFQVWREF 103 (247)
T ss_dssp HHHT---S-EEEEEESSHHGGGGGS--TT---SSEEEEEETTEEE-HHHHHHHHHHHCCS
T ss_pred cccCCCCceEEEEecCCccHHhcCcCcccc-CcceEEEecCCcccCHHHHHHHHHHHHhC
Confidence 345555566666667666677888744333 47999999999999999998888887743
No 51
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=26.85 E-value=31 Score=27.73 Aligned_cols=25 Identities=40% Similarity=0.786 Sum_probs=18.8
Q ss_pred cccccCccEEEEecCcccCCCCChHHHHHHHHHhC
Q 015489 202 PDIVASYDYIFIWDEDLGVENFNGEEYIKLVRKHG 236 (406)
Q Consensus 202 Pdiva~YDYIflwDDDL~vd~f~i~ry~~Ivr~~g 236 (406)
..+...|||||++|.+ +++-.|+.|
T Consensus 13 ~~i~~~~~~iFt~D~~----------~~~~~~~~G 37 (79)
T PF12996_consen 13 YSIANSYDYIFTFDRS----------FVEEYRNLG 37 (79)
T ss_pred hhhCCCCCEEEEECHH----------HHHHHHHcC
Confidence 4788899999999975 345555666
No 52
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=26.80 E-value=57 Score=26.24 Aligned_cols=21 Identities=24% Similarity=0.661 Sum_probs=10.4
Q ss_pred CCCchhhHHHHHHHHHHHHhh
Q 015489 10 IKPAETMKLMITTFVGVAVGF 30 (406)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~gf 30 (406)
-+|+-.+-+++.+++|+++|+
T Consensus 54 ~~P~~~lil~l~~~~Gl~lgi 74 (82)
T PF13807_consen 54 VSPKRALILALGLFLGLILGI 74 (82)
T ss_pred CCCcHHHHHHHHHHHHHHHHH
Confidence 456654444444444444444
No 53
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=25.91 E-value=88 Score=29.47 Aligned_cols=87 Identities=22% Similarity=0.091 Sum_probs=52.4
Q ss_pred ceEEEEEeccccccchhHHhhcc-ccCcEEEEEEECCCCCcccccccccceEEEEeeccccccccccccCcccccCccEE
Q 015489 133 KYLVTFTVGFDLKHNIDAAVKKF-SENFTIMLFHYDGRTSDWEEFEWSKRAIHVSARKQTKWWYAKRFLHPDIVASYDYI 211 (406)
Q Consensus 133 k~Lla~~VG~~qk~~vd~~v~kf-~~nF~vmLFhYDG~~~~W~d~eWs~~aiHv~a~kqtKWw~akRFLHPdiva~YDYI 211 (406)
-.+..++-|++.. +.+++-+-. ..++.+-+..++- .++..+++.. ..-+++- ..||+=|+++..||-|
T Consensus 31 ~~~~il~~~is~~-~~~~L~~~~~~~~~~i~~~~~~~--~~~~~~~~~~-------~~~~~~~-y~RL~i~~llp~~~kv 99 (246)
T cd00505 31 LRFHVLTNPLSDT-FKAALDNLRKLYNFNYELIPVDI--LDSVDSEHLK-------RPIKIVT-LTKLHLPNLVPDYDKI 99 (246)
T ss_pred eEEEEEEccccHH-HHHHHHHHHhccCceEEEEeccc--cCcchhhhhc-------Cccccce-eHHHHHHHHhhccCeE
Confidence 4566666666552 333322212 1467777666643 4555454420 1112232 3556568998889999
Q ss_pred EEecCcccCCCCChHHHHHH
Q 015489 212 FIWDEDLGVENFNGEEYIKL 231 (406)
Q Consensus 212 flwDDDL~vd~f~i~ry~~I 231 (406)
...|.|+.+- -+++.++++
T Consensus 100 lYLD~D~iv~-~di~~L~~~ 118 (246)
T cd00505 100 LYVDADILVL-TDIDELWDT 118 (246)
T ss_pred EEEcCCeeec-cCHHHHhhc
Confidence 9999999986 688888865
No 54
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=24.70 E-value=1.1e+02 Score=27.86 Aligned_cols=178 Identities=16% Similarity=0.187 Sum_probs=87.3
Q ss_pred cccCCCCCCCCCCCCCceEEEEEecccc--ccchhHHhhcccc-CcEEEEEEECCCCCcccccccccceEEEEeeccccc
Q 015489 117 PRRLWGSPDKDLPIRPKYLVTFTVGFDL--KHNIDAAVKKFSE-NFTIMLFHYDGRTSDWEEFEWSKRAIHVSARKQTKW 193 (406)
Q Consensus 117 l~~Lwg~p~~~~~~~~k~Lla~~VG~~q--k~~vd~~v~kf~~-nF~vmLFhYDG~~~~W~d~eWs~~aiHv~a~kqtKW 193 (406)
+|.=||++..-. ..+.-+.+-||... ...++..+++=++ .=||+++-+ .|.+..+.. +.+. .-+|
T Consensus 6 IR~TW~~~~~~~--~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~---~D~y~nlt~--K~~~-----~~~w 73 (195)
T PF01762_consen 6 IRETWGNQRNFK--GVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDF---VDSYRNLTL--KTLA-----GLKW 73 (195)
T ss_pred HHHHHhcccccC--CCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeec---ccccchhhH--HHHH-----HHHH
Confidence 466788765422 24667778888877 4445565554333 336665433 344443321 1111 1122
Q ss_pred cccccccCcccccCccEEEEecCcccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCcceeeeeccccCc
Q 015489 194 WYAKRFLHPDIVASYDYIFIWDEDLGVENFNGEEYIKLVRKHGLEISQPGLEPNGWLTWQMTKRRNDTEVHTQTEEREGW 273 (406)
Q Consensus 194 w~akRFLHPdiva~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~ 273 (406)
- .+.+ ..++||+..|||+-| ++.++++..++.-.+...+.+.. ......-..|.+..+-+- ....
T Consensus 74 ~-~~~c------~~~~~v~k~DDD~~v---n~~~l~~~L~~~~~~~~~~~~~g-~~~~~~~~~r~~~~kw~v----~~~~ 138 (195)
T PF01762_consen 74 A-SKHC------PNAKYVLKVDDDVFV---NPDRLVSFLKSLKQDPSKNSIYG-GCIKNGPPIRDPSSKWYV----SEEE 138 (195)
T ss_pred H-HhhC------CchhheeecCcEEEE---ehHHhhhhhhhcccCcccccccc-ccccCCccccccccCcee----eeee
Confidence 2 2222 258999999999988 55666666666522222222211 111111122222222100 0000
Q ss_pred cCCCCCCCCcceEEEeeccccHHHHHHHhhhhcCCCcceehhhhhchhhhcC
Q 015489 274 CAETHEPPCAAFVEIMATVFSREAWRCVWYMIQNDLVHGWGLDFALRKCVEP 325 (406)
Q Consensus 274 C~~~~~ppcTgFVEiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~~~~C~~~ 325 (406)
=+....||+ ....+-++|+++.+.+....+ ....-+-=|-.++.|++.
T Consensus 139 y~~~~yP~y---~~G~~yvls~~~v~~i~~~~~-~~~~~~~eDv~iGi~~~~ 186 (195)
T PF01762_consen 139 YPDDYYPPY---CSGGGYVLSSDVVKRIYKASS-HTPFFPLEDVFIGILAEK 186 (195)
T ss_pred cccccCCCc---CCCCeEEecHHHHHHHHHHhh-cCCCCCchHHHHHHHHHH
Confidence 011234443 346778899999988766532 222223334445888763
No 55
>PF12621 DUF3779: Phosphate metabolism protein ; InterPro: IPR022257 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02714 from PFAM. There are two completely conserved residues (W and D) that may be functionally important. This family is likely to be involved in phosphate metabolism however there is little accompanying literature to confirm this.
Probab=23.90 E-value=43 Score=28.25 Aligned_cols=44 Identities=34% Similarity=0.548 Sum_probs=34.8
Q ss_pred ccccCcccccCccEEEEecCcccCCCCChHHHHHHHHHhCCcccCCCc
Q 015489 197 KRFLHPDIVASYDYIFIWDEDLGVENFNGEEYIKLVRKHGLEISQPGL 244 (406)
Q Consensus 197 kRFLHPdiva~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPAL 244 (406)
..|+||.+.++--.|||+-|++|+.... ++-.++.|+.||.-+-
T Consensus 34 ~ay~~Pa~~~~~P~lWIP~D~~GvS~~e----i~~~~~~~v~~Sd~gA 77 (95)
T PF12621_consen 34 HAYLHPAVSAPQPILWIPRDPLGVSRQE----IEETRKVGVPISDEGA 77 (95)
T ss_pred hccCCHhHcCCCCeEEeecCCCCCCHHH----HHHhhcCCeEEECCCe
Confidence 5699999999999999999999997644 4456667777775543
No 56
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=22.86 E-value=2.3e+02 Score=29.21 Aligned_cols=98 Identities=13% Similarity=0.051 Sum_probs=58.0
Q ss_pred CceEEEEEeccccccchhHHhhccc----cCcEEEEEEECCCCCccccc--cccc--ceEEEEe--eccccccccccccC
Q 015489 132 PKYLVTFTVGFDLKHNIDAAVKKFS----ENFTIMLFHYDGRTSDWEEF--EWSK--RAIHVSA--RKQTKWWYAKRFLH 201 (406)
Q Consensus 132 ~k~Lla~~VG~~qk~~vd~~v~kf~----~nF~vmLFhYDG~~~~W~d~--eWs~--~aiHv~a--~kqtKWw~akRFLH 201 (406)
|+.-+.+++=-.. ..+.++++..- .+|+|+ +.=||+.|+..+. ++.. ..+++.. .+++|=.-.+.-+
T Consensus 75 p~vsViIP~yNE~-~~i~~~l~sll~q~yp~~eIi-vVdDgs~D~t~~~~~~~~~~~~~v~vv~~~~n~Gka~AlN~gl- 151 (444)
T PRK14583 75 PLVSILVPCFNEG-LNARETIHAALAQTYTNIEVI-AINDGSSDDTAQVLDALLAEDPRLRVIHLAHNQGKAIALRMGA- 151 (444)
T ss_pred CcEEEEEEeCCCH-HHHHHHHHHHHcCCCCCeEEE-EEECCCCccHHHHHHHHHHhCCCEEEEEeCCCCCHHHHHHHHH-
Confidence 4566777765443 34545554431 478876 4568988876431 1211 1133332 4566643333322
Q ss_pred cccccCccEEEEecCcccCCCCChHHHHHHHHH
Q 015489 202 PDIVASYDYIFIWDEDLGVENFNGEEYIKLVRK 234 (406)
Q Consensus 202 Pdiva~YDYIflwDDDL~vd~f~i~ry~~Ivr~ 234 (406)
..+.||||.+.|.|-.++...+.++.+-+.+
T Consensus 152 --~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~ 182 (444)
T PRK14583 152 --AAARSEYLVCIDGDALLDKNAVPYLVAPLIA 182 (444)
T ss_pred --HhCCCCEEEEECCCCCcCHHHHHHHHHHHHh
Confidence 2367999999999999988888887775543
No 57
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=21.87 E-value=70 Score=33.24 Aligned_cols=22 Identities=23% Similarity=0.590 Sum_probs=19.5
Q ss_pred CCCcceEEEe-eccccHHHHHHH
Q 015489 280 PPCAAFVEIM-ATVFSREAWRCV 301 (406)
Q Consensus 280 ppcTgFVEiM-APVFSR~Awrcv 301 (406)
+-|++|+|++ |-+|+.+-++.+
T Consensus 271 ~~~~~WlEi~G~Gmv~P~VL~~~ 293 (335)
T COG0016 271 PGCGGWLEILGCGMVHPNVLEAV 293 (335)
T ss_pred cCCCCEEEEecccccCHHHHHhc
Confidence 5589999999 999999999876
No 58
>PF09828 Chrome_Resist: Chromate resistance exported protein; InterPro: IPR018634 Members of this family of bacterial proteins are involved in the reduction of chromate accumulation and are essential for chromate resistance [, ].
Probab=21.77 E-value=59 Score=29.85 Aligned_cols=52 Identities=21% Similarity=0.496 Sum_probs=35.8
Q ss_pred ccccccccCcccccCccEEEEecCc-------ccCCCCCh-----------HHHHHHHHHhCCcccCCCccCCCCc
Q 015489 193 WWYAKRFLHPDIVASYDYIFIWDED-------LGVENFNG-----------EEYIKLVRKHGLEISQPGLEPNGWL 250 (406)
Q Consensus 193 Ww~akRFLHPdiva~YDYIflwDDD-------L~vd~f~i-----------~ry~~Ivr~~gLeISQPALd~~S~i 250 (406)
=|+++||+-|+ =+++|+.++. .+...||+ -.|=-++++||| .+|||..=..|
T Consensus 15 ~WLIrRFIDp~----A~F~fv~~~~v~~~~~~~~A~pFD~~ga~~tH~g~~cTFe~ll~~f~L--~dpaL~~la~I 84 (135)
T PF09828_consen 15 PWLIRRFIDPE----AEFLFVPPPEVLDVACPFDAIPFDIPGAEFTHRGDRCTFEVLLASFGL--DDPALARLAAI 84 (135)
T ss_pred HHHHHHhcCCC----ceEEEeCchhhccccccCCCCcccCCCCeeeeeCCcccHHHHHHHhCC--CCHHHHHHHHH
Confidence 48999999875 4677887776 12223443 346678899999 89999754333
No 59
>PRK10073 putative glycosyl transferase; Provisional
Probab=20.92 E-value=88 Score=31.18 Aligned_cols=105 Identities=17% Similarity=0.207 Sum_probs=59.0
Q ss_pred CceEEEEEeccccccchhHHhhcc----ccCcEEEEEEECCCCCcccc--cccccc--eEEEE-eeccccccccccccCc
Q 015489 132 PKYLVTFTVGFDLKHNIDAAVKKF----SENFTIMLFHYDGRTSDWEE--FEWSKR--AIHVS-ARKQTKWWYAKRFLHP 202 (406)
Q Consensus 132 ~k~Lla~~VG~~qk~~vd~~v~kf----~~nF~vmLFhYDG~~~~W~d--~eWs~~--aiHv~-a~kqtKWw~akRFLHP 202 (406)
|+.-+++|| ++....+.++++-. -.+|.|+ +.=||++|+=.+ -+|.++ .+++. -.+++. ..-|- .-
T Consensus 6 p~vSVIIP~-yN~~~~L~~~l~Sl~~Qt~~~~EII-iVdDgStD~t~~i~~~~~~~~~~i~vi~~~n~G~--~~arN-~g 80 (328)
T PRK10073 6 PKLSIIIPL-YNAGKDFRAFMESLIAQTWTALEII-IVNDGSTDNSVEIAKHYAENYPHVRLLHQANAGV--SVARN-TG 80 (328)
T ss_pred CeEEEEEec-cCCHHHHHHHHHHHHhCCCCCeEEE-EEeCCCCccHHHHHHHHHhhCCCEEEEECCCCCh--HHHHH-HH
Confidence 456677777 44434444444443 2578777 456888764211 112111 23322 222221 00000 01
Q ss_pred ccccCccEEEEecCcccCCCCChHHHHHHHHHhCCcccC
Q 015489 203 DIVASYDYIFIWDEDLGVENFNGEEYIKLVRKHGLEISQ 241 (406)
Q Consensus 203 diva~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQ 241 (406)
=-.+.-|||++.|.|-.++...++++++.+++.++++..
T Consensus 81 l~~a~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~ 119 (328)
T PRK10073 81 LAVATGKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQ 119 (328)
T ss_pred HHhCCCCEEEEECCCCccChhHHHHHHHHHHhCCCCEEE
Confidence 112567999999999888888888899988888777754
No 60
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=20.82 E-value=1e+02 Score=28.78 Aligned_cols=30 Identities=17% Similarity=0.176 Sum_probs=25.4
Q ss_pred ccCccEEEEecCcccCCCCChHHHHHHHHH
Q 015489 205 VASYDYIFIWDEDLGVENFNGEEYIKLVRK 234 (406)
Q Consensus 205 va~YDYIflwDDDL~vd~f~i~ry~~Ivr~ 234 (406)
.+.+|||++.|.|..++.-.+.++.+.+.+
T Consensus 71 ~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~ 100 (244)
T cd04190 71 PDDPEFILLVDADTKFDPDSIVQLYKAMDK 100 (244)
T ss_pred cCCCCEEEEECCCCcCCHhHHHHHHHHHHh
Confidence 478999999999999988888888777643
No 61
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=20.63 E-value=97 Score=27.04 Aligned_cols=29 Identities=21% Similarity=0.115 Sum_probs=24.5
Q ss_pred cCccEEEEecCcccCCCCChHHHHHHHHH
Q 015489 206 ASYDYIFIWDEDLGVENFNGEEYIKLVRK 234 (406)
Q Consensus 206 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~ 234 (406)
+.||||++.|.|..++...+.++.+.+..
T Consensus 80 ~~~d~v~~~DaD~~~~p~~l~~l~~~~~~ 108 (183)
T cd06438 80 DDPDAVVVFDADNLVDPNALEELNARFAA 108 (183)
T ss_pred CCCCEEEEEcCCCCCChhHHHHHHHHHhh
Confidence 46999999999999998888888776653
No 62
>KOG4179 consensus Lysyl hydrolase/glycosyltransferase family 25 [Posttranslational modification, protein turnover, chaperones]
Probab=20.46 E-value=53 Score=35.68 Aligned_cols=62 Identities=26% Similarity=0.286 Sum_probs=46.1
Q ss_pred EEeeccccccccccccCc------------ccccCccEEEEecCcccCCCCChHHHHHHHHHhCCcccCCCccCCCCcc
Q 015489 185 VSARKQTKWWYAKRFLHP------------DIVASYDYIFIWDEDLGVENFNGEEYIKLVRKHGLEISQPGLEPNGWLT 251 (406)
Q Consensus 185 v~a~kqtKWw~akRFLHP------------diva~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~is 251 (406)
+.-..|.|||-..||-|- +.+ -|||++.|+|..+++-+- +.+.-..+|.|-.|-|...+.+|
T Consensus 77 ~~d~~~pk~W~~sr~q~lm~lKeea~~~~r~~~--adyilf~d~d~lLts~dT---l~llm~l~~~ivapml~S~~~yS 150 (568)
T KOG4179|consen 77 YPDEHGPKHWPDSRFQHLMSLKEEALNWARSGW--ADYILFKDEDNLLTSGDT---LPLLMNLILPIVAPMLKSHVLYS 150 (568)
T ss_pred cCcccCCccCchHHHHHHHHHHHHHHHHHHhhh--cceeEEeehhheeeCCch---HhHHHhcccceechhhhcccccc
Confidence 334568999999999772 233 389999999988877654 34445778999999988776554
No 63
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.41 E-value=43 Score=29.68 Aligned_cols=20 Identities=20% Similarity=0.607 Sum_probs=15.7
Q ss_pred HHHHHHHhhheeeeccceee
Q 015489 22 TFVGVAVGFFLGICFPAISI 41 (406)
Q Consensus 22 ~~~~~~~gf~~g~s~p~~~~ 41 (406)
+++|+|+|++||+.+-.+.-
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~ 21 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTS 21 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 57899999999988665544
No 64
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=20.37 E-value=3.5e+02 Score=28.53 Aligned_cols=54 Identities=20% Similarity=0.411 Sum_probs=37.6
Q ss_pred EEeeccccHHHHHHHh----hhh-cCCCcceehhhhhchhhhcCCCCeEEEEeeeeEEee
Q 015489 287 EIMATVFSREAWRCVW----YMI-QNDLVHGWGLDFALRKCVEPAHEKIGVVDAQWIVHQ 341 (406)
Q Consensus 287 EiMAPVFSR~Awrcvw----~mi-qNDLvhGWGLDf~~~~C~~~~~~kiGVVDa~~VvH~ 341 (406)
.-|+=.|+|++|+-+- .|- .+|--.-|-|-..-..|... .-++=++-+-=|.|.
T Consensus 232 HNmGmAfNRs~W~kI~~ca~~FC~yDDYNWDwSL~~ls~~cl~~-~~kvL~~~~PRV~Hi 290 (356)
T PF05060_consen 232 HNMGMAFNRSTWNKIKSCADEFCTYDDYNWDWSLQHLSQRCLPS-PLKVLVPKGPRVFHI 290 (356)
T ss_pred ccceeEecHHHHHHHHHHHHHhCCCCCCCchHHHHHHHhhccCC-ccEEEEEccCcEEEc
Confidence 3588899999996443 222 46666667777777788753 345557778889996
Done!