BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015490
(406 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
+ D+++S D LVS + ++WD++S L ++ +F C F+P +N L
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSN----LI 125
Query: 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXX 331
++ D S+ W+ T K ++T +PVS+ + + DG L+ +
Sbjct: 126 VSGSFDE--SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
Q + V+ + FS + + +++A++D+++++
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 221
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 171 LALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNR 230
F+ + + +GS + ++R++ + + + V + F+ DG +VS
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 231 GPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW 290
G R+WD AS L +++ + +FSP N Y+L AA D ++ W+ +
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP--NGKYIL--AATLDN--TLKLWDYSKG 227
Query: 291 KRIRT 295
K ++T
Sbjct: 228 KCLKT 232
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
+ D+++S D LVS + ++WD++S L ++ +F C F+P +N L
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSN----LI 125
Query: 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXX 331
++ D S+ W+ T K ++T +PVS+ + + DG L+ +
Sbjct: 126 VSGSFDE--SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
Q + V+ + FS + + +++A++D+++++
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 221
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 90/209 (43%), Gaps = 16/209 (7%)
Query: 171 LALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNR 230
F+ + + +GS + ++R++ + + + V + F+ DG +VS
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 231 GPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW 290
G R+WD AS L +++ + +FSP N Y+L AA D ++ W+ +
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP--NGKYIL--AATLDN--TLKLWDYSKG 227
Query: 291 KRIRT----KQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXXLQVRTAVKK--AHLG 344
K ++T K ++F+V+ GK + G+ LQ + V+K H
Sbjct: 228 KCLKTYTGHKNEKYCIFANFSVTG-GKWIVSGS---EDNLVYIWNLQTKEIVQKLQGHTD 283
Query: 345 IVTALAFSYDSRALVSASMDSSVRVTVIE 373
+V + A + SA++++ + + +
Sbjct: 284 VVISTACHPTENIIASAALENDKTIKLFK 312
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
+ D+++S D LVS + ++WD++S L ++ +F C F+P +N L
Sbjct: 85 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSN----LI 139
Query: 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXX 331
++ D S+ W+ T K ++T +PVS+ + + DG L+ +
Sbjct: 140 VSGSFDE--SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 197
Query: 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
Q + V+ + FS + + +++A++D+++++
Sbjct: 198 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 235
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 171 LALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNR 230
F+ + + +GS + ++R++ + + + V + F+ DG +VS
Sbjct: 128 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 187
Query: 231 GPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW 290
G R+WD AS L +++ + +FSP N Y+L AA D ++ W+ +
Sbjct: 188 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP--NGKYIL--AATLDN--TLKLWDYSKG 241
Query: 291 KRIRT 295
K ++T
Sbjct: 242 KCLKT 246
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
+ D+++S D LVS + ++WD++S L ++ +F C F+P +N L
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSN----LI 125
Query: 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXX 331
++ D S+ W+ T K ++T +PVS+ + + DG L+ +
Sbjct: 126 VSGSFDE--SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
Q + V+ + FS + + +++A++D+++++
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 221
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 171 LALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNR 230
F+ + + +GS + ++R++ + + + V + F+ DG +VS
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 231 GPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW 290
G R+WD AS L +++ + +FSP N Y+L AA D ++ W+ +
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP--NGKYIL--AATLDN--TLKLWDYSKG 227
Query: 291 KRIRT 295
K ++T
Sbjct: 228 KCLKT 232
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
+ D+++S D LVS + ++WD++S L ++ +F C F+P +N L
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSN----LI 128
Query: 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXX 331
++ D S+ W+ T K ++T +PVS+ + + DG L+ +
Sbjct: 129 VSGSFDE--SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
Q + V+ + FS + + +++A++D+++++
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 224
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 171 LALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNR 230
F+ + + +GS + ++R++ + + + V + F+ DG +VS
Sbjct: 117 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 176
Query: 231 GPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW 290
G R+WD AS L +++ + +FSP N Y+L AA D ++ W+ +
Sbjct: 177 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP--NGKYIL--AATLDN--TLKLWDYSKG 230
Query: 291 KRIRT 295
K ++T
Sbjct: 231 KCLKT 235
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
+ D+++S D LVS + ++WD++S L ++ +F C F+P +N L
Sbjct: 67 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSN----LI 121
Query: 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXX 331
++ D S+ W+ T K ++T +PVS+ + + DG L+ +
Sbjct: 122 VSGSFDE--SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 179
Query: 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
Q + V+ + FS + + +++A++D+++++
Sbjct: 180 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 217
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 171 LALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNR 230
F+ + + +GS + ++R++ + + + V + F+ DG +VS
Sbjct: 110 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 169
Query: 231 GPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW 290
G R+WD AS L +++ + +FSP N Y+L AA D ++ W+ +
Sbjct: 170 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP--NGKYIL--AATLDN--TLKLWDYSKG 223
Query: 291 KRIRT 295
K ++T
Sbjct: 224 KCLKT 228
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
+ D+++S D LVS + ++WD++S L ++ +F C F+P +N L
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSN----LI 122
Query: 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXX 331
++ D S+ W+ T K ++T +PVS+ + + DG L+ +
Sbjct: 123 VSGSFDE--SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Query: 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
Q + V+ + FS + + +++A++D+++++
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 218
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 171 LALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNR 230
F+ + + +GS + ++R++ + + + V + F+ DG +VS
Sbjct: 111 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170
Query: 231 GPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW 290
G R+WD AS L +++ + +FSP N Y+L AA D ++ W+ +
Sbjct: 171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP--NGKYIL--AATLDN--TLKLWDYSKG 224
Query: 291 KRIRT 295
K ++T
Sbjct: 225 KCLKT 229
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
+ D+++S D LVS + ++WD++S L ++ +F C F+P +N L
Sbjct: 64 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSN----LI 118
Query: 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXX 331
++ D S+ W+ T K ++T +PVS+ + + DG L+ +
Sbjct: 119 VSGSFDE--SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 176
Query: 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
Q + V+ + FS + + +++A++D+++++
Sbjct: 177 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 214
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 171 LALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNR 230
F+ + + +GS + ++R++ + + + V + F+ DG +VS
Sbjct: 107 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 166
Query: 231 GPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW 290
G R+WD AS L +++ + +FSP N Y+L AA D ++ W+ +
Sbjct: 167 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP--NGKYIL--AATLDN--TLKLWDYSKG 220
Query: 291 KRIRT 295
K ++T
Sbjct: 221 KCLKT 225
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
+ D+++S D LVS + ++WD++S L ++ +F C F+P +N L
Sbjct: 73 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSN----LI 127
Query: 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXX 331
++ D S+ W+ T K ++T +PVS+ + + DG L+ +
Sbjct: 128 VSGSFDE--SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 185
Query: 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
Q + V+ + FS + + +++A++D+++++
Sbjct: 186 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 223
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 171 LALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNR 230
F+ + + +GS + ++R++ + + + V + F+ DG +VS
Sbjct: 116 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 175
Query: 231 GPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW 290
G R+WD AS L +++ + +FSP N Y+L AA D ++ W+ +
Sbjct: 176 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP--NGKYIL--AATLDN--TLKLWDYSKG 229
Query: 291 KRIRT 295
K ++T
Sbjct: 230 KCLKT 234
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
+ D+++S D LVS + ++WD++S L ++ +F C F+P +N L
Sbjct: 69 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSN----LI 123
Query: 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXX 331
++ D S+ W+ T K ++T +PVS+ + + DG L+ +
Sbjct: 124 VSGSFDE--SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 181
Query: 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
Q + V+ + FS + + +++A++D+++++
Sbjct: 182 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 219
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 171 LALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNR 230
F+ + + +GS + ++R++ + + + V + F+ DG +VS
Sbjct: 112 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 171
Query: 231 GPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW 290
G R+WD AS L +++ + +FSP N Y+L AA D ++ W+ +
Sbjct: 172 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP--NGKYIL--AATLDN--TLKLWDYSKG 225
Query: 291 KRIRT 295
K ++T
Sbjct: 226 KCLKT 230
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
+ D+++S D LVS + ++WD++S L ++ +F C F+P +N L
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSN----LI 128
Query: 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXX 331
++ D S+ W+ T K ++T +PVS+ + + DG L+ +
Sbjct: 129 VSGSFDE--SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
Q + V+ + FS + + +++A++D+++++
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 224
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 171 LALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNR 230
F+ + + +GS + ++R++ + + + V + F+ DG +VS
Sbjct: 117 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 176
Query: 231 GPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW 290
G R+WD AS L +++ + +FSP N Y+L AA D ++ W+ +
Sbjct: 177 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP--NGKYIL--AATLDN--TLKLWDYSKG 230
Query: 291 KRIRT 295
K ++T
Sbjct: 231 KCLKT 235
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
+ D+++S D LVS + ++WD++S L ++ +F C F+P +N L
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSN----LI 122
Query: 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXX 331
++ D S+ W+ T K ++T +PVS+ + + DG L+ +
Sbjct: 123 VSGSFDE--SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Query: 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
Q + V+ + FS + + +++A++D+++++
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 218
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 171 LALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNR 230
F+ + + +GS + ++R++ + + + V + F+ DG +VS
Sbjct: 111 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170
Query: 231 GPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW 290
G R+WD AS L +++ + +FSP N Y+L AA D ++ W+ +
Sbjct: 171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP--NGKYIL--AATLDN--TLKLWDYSKG 224
Query: 291 KRIRT 295
K ++T
Sbjct: 225 KCLKT 229
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
+ D+++S D LVS + ++WD++S L ++ +F C F+P +N L
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSN----LI 128
Query: 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXX 331
++ D S+ W+ T K ++T +PVS+ + + DG L+ +
Sbjct: 129 VSGSFDE--SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
Q + V+ + FS + + +++A++D+++++
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 224
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 171 LALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNR 230
F+ + + +GS + ++R++ + + + V + F+ DG +VS
Sbjct: 117 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 176
Query: 231 GPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW 290
G R+WD AS L +++ + +FSP N Y+L AA D ++ W+ +
Sbjct: 177 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP--NGKYIL--AATLDN--TLKLWDYSKG 230
Query: 291 KRIRT 295
K ++T
Sbjct: 231 KCLKT 235
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
+ D+++S D LVS + ++WD++S L ++ +F C F+P +N L
Sbjct: 90 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSN----LI 144
Query: 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXX 331
++ D S+ W+ T K ++T +PVS+ + + DG L+ +
Sbjct: 145 VSGSFDE--SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 202
Query: 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
Q + V+ + FS + + +++A++D+++++
Sbjct: 203 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 240
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 171 LALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNR 230
F+ + + +GS + ++R++ + + + V + F+ DG +VS
Sbjct: 133 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 192
Query: 231 GPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW 290
G R+WD AS L +++ + +FSP N Y+L AA D ++ W+ +
Sbjct: 193 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP--NGKYIL--AATLDN--TLKLWDYSKG 246
Query: 291 KRIRT 295
K ++T
Sbjct: 247 KCLKT 251
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
+ D+++S D LVS + ++WD++S L ++ +F C F+P +N L
Sbjct: 92 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSN----LI 146
Query: 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXX 331
++ D S+ W+ T K ++T +PVS+ + + DG L+ +
Sbjct: 147 VSGSFDE--SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 204
Query: 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
Q + V+ + FS + + +++A++D+++++
Sbjct: 205 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 242
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 171 LALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNR 230
F+ + + +GS + ++R++ + + + V + F+ DG +VS
Sbjct: 135 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 194
Query: 231 GPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW 290
G R+WD AS L +++ + +FSP N Y+L AA D ++ W+ +
Sbjct: 195 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP--NGKYIL--AATLDN--TLKLWDYSKG 248
Query: 291 KRIRT 295
K ++T
Sbjct: 249 KCLKT 253
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 74/158 (46%), Gaps = 7/158 (4%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
+ D+++S D LVS + ++WD++S L ++ +F C F+P +N L
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSN----LI 125
Query: 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXX 331
++ D S+ W+ T ++T +PVS+ + + DG L+ +
Sbjct: 126 VSGSFDE--SVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
Q + V+ + FS + + +++A++D+++++
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 221
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 8/126 (6%)
Query: 171 LALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHAS-VKDLSFSPDGKFLVSLGN 229
F+ + + +GS + ++R++ + L AH+ V + F+ DG +VS
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWD-VKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 172
Query: 230 RGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT 289
G R+WD AS L +++ + +FSP N Y+L AA D ++ W+ +
Sbjct: 173 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP--NGKYIL--AATLDN--TLKLWDYSK 226
Query: 290 WKRIRT 295
K ++T
Sbjct: 227 GKCLKT 232
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 73/158 (46%), Gaps = 7/158 (4%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
+ D+++S D LVS + ++WD++S L ++ +F C F+P +N L
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSN----LI 125
Query: 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXX 331
++ D S+ W+ T ++T +PVS+ + + DG L+ +
Sbjct: 126 VSGSFDE--SVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
Q + V+ + FS + + +++A++D+ +++
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKL 221
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query: 171 LALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHAS-VKDLSFSPDGKFLVSLGN 229
F+ + + +GS + ++R++ + L AH+ V + F+ DG +VS
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWD-VKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 172
Query: 230 RGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT 289
G R+WD AS L +++ + +FSP N Y+L AA D + W+ +
Sbjct: 173 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP--NGKYIL--AATLDNDLKL--WDYSK 226
Query: 290 WKRIRT 295
K ++T
Sbjct: 227 GKCLKT 232
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 28/182 (15%)
Query: 203 LNESEAHAS---VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCR 259
LN S + +S ++ + FSPDGKFL + R+WD+ + + L +++ S
Sbjct: 114 LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY-SLD 172
Query: 260 FSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV-----VREPVSSFNVS-ADGK 313
+ P ++ ++ DR I W+ +RT Q + + V++ VS DGK
Sbjct: 173 YFPSGDK----LVSGSGDRTVRI--WD------LRTGQCSLTLSIEDGVTTVAVSPGDGK 220
Query: 314 LLAVGTAX------XXXXXXXXXXLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSV 367
+A G+ L H V ++ F+ D +++VS S+D SV
Sbjct: 221 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 280
Query: 368 RV 369
++
Sbjct: 281 KL 282
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 10/117 (8%)
Query: 209 HASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASC-RFSPLNN-- 265
+ V ++FSPD + ++S G ++W++ + KEN + SC R+SP+
Sbjct: 118 QSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSA 177
Query: 266 ---EDYVLYIAAITDRGASIVTWNTTTWKRIR-TKQVVREPVSSFNVSADGKLLAVG 318
+ + Y A++ G + WNT +IR T + V+ ++S +GK +A G
Sbjct: 178 NKVQPFAPYFASVGWDG-RLKVWNTNF--QIRYTFKAHESNVNHLSISPNGKYIATG 231
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 11/124 (8%)
Query: 182 FAAGSENGNLRVFKWPSLEIILNESEAHAS-VKDLSFSPDGKFLVSLGNRGPGRVWDLAS 240
FA+ +G L+V W + I +AH S V LS SP+GK++ + G +WD+ +
Sbjct: 187 FASVGWDGRLKV--WNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN 244
Query: 241 SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR 300
L E A + + + ++A TD+G I N T + +
Sbjct: 245 ------LTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIF--NLMTQSKAPVCTIEA 296
Query: 301 EPVS 304
EP++
Sbjct: 297 EPIT 300
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 10/74 (13%)
Query: 175 FDSEGTIFAAGSENGNLRVFKWPSLEII-----LNESEAHAS---VKDLSFSPDGKFLVS 226
F + T+ A G +NG +R++ + E++ L+E A V DL FSPDGK L+S
Sbjct: 1141 FSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLIS 1200
Query: 227 LGNRGPGRVWDLAS 240
G G + W++ +
Sbjct: 1201 AG--GYIKWWNVVT 1212
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 5/147 (3%)
Query: 174 TFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPG 233
F +G A+ + L+VFK + E +L V +FS D +F+ +
Sbjct: 628 CFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKV 687
Query: 234 RVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRI 293
++W+ + + E+ E C F+ N+ ++L +D + W+ +
Sbjct: 688 KIWNSMTGELVHTY-DEHSEQVNCCHFT--NSSHHLLLATGSSD--CFLKLWDLNQKECR 742
Query: 294 RTKQVVREPVSSFNVSADGKLLAVGTA 320
T V+ S D KLLA +A
Sbjct: 743 NTMFGHTNSVNHCRFSPDDKLLASCSA 769
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 173 LTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHA-SVKDLSFSPDGKFLVSLGNRG 231
T S + A GS + L+++ E N H SV FSPD K L S G
Sbjct: 713 FTNSSHHLLLATGSSDCFLKLWDLNQKEC-RNTMFGHTNSVNHCRFSPDDKLLASCSADG 771
Query: 232 PGRVWDLASS 241
++WD S+
Sbjct: 772 TLKLWDATSA 781
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 27/159 (16%)
Query: 168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAH-ASVKDLSFSPDGKFLVS 226
G L+ + T F++ S + +++ + L + L+E H V+ +FS D L +
Sbjct: 1092 GTVLSCDISHDATKFSSTSADKTAKIWSFDLL-LPLHELRGHNGCVRCSAFSVDSTLLAT 1150
Query: 227 LGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITD--------- 277
+ G R+W+++ N EL C +PL+ E + +TD
Sbjct: 1151 GDDNGEIRIWNVS-----------NGELLHLC--APLSEEGAATHGGWVTDLCFSPDGKM 1197
Query: 278 ---RGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGK 313
G I WN T + +T + +VS D K
Sbjct: 1198 LISAGGYIKWWNVVTGESSQTFYTNGTNLKKIHVSPDFK 1236
>pdb|4H5I|A Chain A, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P1 Form)
pdb|4H5I|B Chain B, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P1 Form)
pdb|4H5J|A Chain A, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P64 Form)
pdb|4H5J|B Chain B, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P64 Form)
Length = 365
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 91/211 (43%), Gaps = 35/211 (16%)
Query: 178 EGTIFAAGSENGNLRVFKWPSLEIILN--------ESEAHASVKDLSFSPDGKFLVSLGN 229
EGT+ A S K P++ I++ E E VKDL FS DGK + +
Sbjct: 144 EGTVAAIASS-------KVPAIXRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYI-- 194
Query: 230 RGPGRVWDLASSAVATPLAKENDELFASCRFSPLN--NEDYVLYIAAITDRGASIV---- 283
G ++ S+ + +A++ D + S +N +D VL IAA +G IV
Sbjct: 195 --TGSSLEVISTVTGSCIARKTD-FDKNWSLSKINFIADDTVL-IAASLKKGKGIVLTKI 250
Query: 284 ---TWNTTTWKRIRTKQVVR--EPVSSFNVSADGKLLAVGTAXXXXXXXXXXXLQVRTAV 338
+ NT+ +R+KQV + ++S +V G+L + + L
Sbjct: 251 SIKSGNTSV---LRSKQVTNRFKGITSXDVDXKGELAVLASNDNSIALVKLKDLSXSKIF 307
Query: 339 KKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
K+AH +T + S DS + S S +++ +
Sbjct: 308 KQAHSFAITEVTISPDSTYVASVSAANTIHI 338
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 171 LALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHA-SVKDLSFSPDGKFLVSLGN 229
L++ + +G A+G+ +G + +F + ++ L+ E HA ++ L+FSPD + LV+ +
Sbjct: 168 LSIAYSPDGKYLASGAIDGIINIFDIATGKL-LHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 230 RGPGRVWDLASSAVATPLA 248
G +++D+ + +A L+
Sbjct: 227 DGYIKIYDVQHANLAGTLS 245
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 173 LTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGP 232
L F + A G+ G + +F S + + + +++SPDGK+L S G
Sbjct: 128 LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGI 187
Query: 233 GRVWDLASSAVATPLAKENDELFASCRFSP 262
++D+A+ + L + S FSP
Sbjct: 188 INIFDIATGKLLHTLEGHAMPI-RSLTFSP 216
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 176 DSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRV 235
D TI +AG++ ++ + +I + ++++ L+ SPDG + S G G +
Sbjct: 164 DDSVTIISAGNDK-XVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXL 222
Query: 236 WDLASSAVATPLAKENDELFASCRFSP 262
W+LA+ L+ + DE+F S FSP
Sbjct: 223 WNLAAKKAXYTLSAQ-DEVF-SLAFSP 247
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 176 DSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRV 235
D TI +AG++ ++ + +I + ++++ L+ SPDG + S G G +
Sbjct: 164 DDSVTIISAGNDK-MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 236 WDLASSAVATPLAKENDELFASCRFSP 262
W+LA+ L+ + DE+F S FSP
Sbjct: 223 WNLAAKKAMYTLSAQ-DEVF-SLAFSP 247
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 176 DSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRV 235
D TI +AG++ ++ + +I + ++++ L+ SPDG + S G G +
Sbjct: 164 DDSVTIISAGNDK-MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 236 WDLASSAVATPLAKENDELFASCRFSP 262
W+LA+ L+ + DE+F S FSP
Sbjct: 223 WNLAAKKAMYTLSAQ-DEVF-SLAFSP 247
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 176 DSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRV 235
D TI +AG++ ++ + +I + ++++ L+ SPDG + S G G +
Sbjct: 158 DDSVTIISAGNDK-MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 216
Query: 236 WDLASSAVATPLAKENDELFASCRFSP 262
W+LA+ L+ + DE+F S FSP
Sbjct: 217 WNLAAKKAMYTLSAQ-DEVF-SLAFSP 241
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 176 DSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRV 235
D TI +AG++ ++ + +I + ++++ L+ SPDG + S G G +
Sbjct: 164 DDSVTIISAGNDK-MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 236 WDLASSAVATPLAKENDELFASCRFSP 262
W+LA+ L+ + DE+F S FSP
Sbjct: 223 WNLAAKKAMYTLSAQ-DEVF-SLAFSP 247
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 176 DSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRV 235
D TI +AG++ ++ + +I + ++++ L+ SPDG + S G G +
Sbjct: 164 DDSVTIISAGNDK-MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 236 WDLASSAVATPLAKENDELFASCRFSP 262
W+LA+ L+ + DE+F S FSP
Sbjct: 223 WNLAAKKAMYTLSAQ-DEVF-SLAFSP 247
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASC-RFSPLNNEDYVL 270
V ++FSPD + +VS G RVW++ + T L++ + SC RFSP + D +
Sbjct: 112 VLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHT-LSRGAHTDWVSCVRFSP--SLDAPV 168
Query: 271 YIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLA 316
++ D + W+ T + + + V+S VS DG L A
Sbjct: 169 IVSGGWDNLVKV--WDLATGRLVTDLKGHTNYVTSVTVSPDGSLCA 212
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 76/197 (38%), Gaps = 17/197 (8%)
Query: 173 LTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGP 232
+ F ++G + SE+ ++V+ W + + + ++ +VKD D + L+S G
Sbjct: 1009 IQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAH-QETVKDFRLLQDSR-LLSWSFDGT 1066
Query: 233 GRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR 292
+VW++ + + + SC S D + + D+ A I W+
Sbjct: 1067 VKVWNVITGRIERDFTCHQGTVL-SCAISS----DATKFSSTSADKTAKI--WSFDLLSP 1119
Query: 293 IRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXXLQVRTAV--------KKAHLG 344
+ + V S DG LLA G Q+ + H G
Sbjct: 1120 LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGG 1179
Query: 345 IVTALAFSYDSRALVSA 361
VT + FS DS+ LVSA
Sbjct: 1180 WVTDVCFSPDSKTLVSA 1196
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 75/193 (38%), Gaps = 12/193 (6%)
Query: 183 AAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLAS-S 241
A G E+G +++ + P+ + + +V+ + F+ DGK L+S +VW+ +
Sbjct: 977 AFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD 1036
Query: 242 AVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVRE 301
V +E + F + S L + + ++ WN T + R +
Sbjct: 1037 YVFLQAHQETVKDFRLLQDSRLLSWSF----------DGTVKVWNVITGRIERDFTCHQG 1086
Query: 302 PVSSFNVSADGKLLAVGTAXXXXXXXXXXXLQVRTAVKKAHLGIVTALAFSYDSRALVSA 361
V S +S+D + +A L + K H G V AFS D L +
Sbjct: 1087 TVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL-KGHNGCVRCSAFSLDGILLATG 1145
Query: 362 SMDSSVRVTVIED 374
+ +R+ + D
Sbjct: 1146 DDNGEIRIWNVSD 1158
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Query: 174 TFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPG 233
F +G A+ + L+VFK + E +L+ V +FS D ++ +
Sbjct: 622 CFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKV 681
Query: 234 RVWDLASSAVATPLAKENDELFASCRFSPLNN 265
++WD A+ + E+ E C F+ +N
Sbjct: 682 KIWDSATGKLVHTY-DEHSEQVNCCHFTNKSN 712
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 79/206 (38%), Gaps = 13/206 (6%)
Query: 173 LTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHA-SVKDLSFSPDGKFLVSLGNRG 231
T S + A GS + L+++ E N H SV FSPD + L S G
Sbjct: 707 FTNKSNHLLLATGSNDFFLKLWDLNQKEC-RNTMFGHTNSVNHCRFSPDDELLASCSADG 765
Query: 232 PGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTW--NTTT 289
R+WD+ S A N + F P + + ++ + + G I+ N
Sbjct: 766 TLRLWDVRS---ANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL 822
Query: 290 WKRIRTKQVVREPVSSFNVS------ADGKLLAVGTAXXXXXXXXXXXLQVRTAVKKAHL 343
I T ++ E + + + + LAV +++ A + HL
Sbjct: 823 LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL 882
Query: 344 GIVTALAFSYDSRALVSASMDSSVRV 369
V + FS D + ++AS D ++RV
Sbjct: 883 SWVHGVMFSPDGSSFLTASDDQTIRV 908
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAH-ASVKDLSFSPDGKFLVS 226
G L+ S+ T F++ S + +++ + L L+E + H V+ +FS DG L +
Sbjct: 1086 GTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP-LHELKGHNGCVRCSAFSLDGILLAT 1144
Query: 227 LGNRGPGRVWDLA 239
+ G R+W+++
Sbjct: 1145 GDDNGEIRIWNVS 1157
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 76/197 (38%), Gaps = 17/197 (8%)
Query: 173 LTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGP 232
+ F ++G + SE+ ++V+ W + + + ++ +VKD D + L+S G
Sbjct: 1016 IQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAH-QETVKDFRLLQDSR-LLSWSFDGT 1073
Query: 233 GRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR 292
+VW++ + + + SC S D + + D+ A I W+
Sbjct: 1074 VKVWNVITGRIERDFTCHQGTVL-SCAIS----SDATKFSSTSADKTAKI--WSFDLLSP 1126
Query: 293 IRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXXLQVRTAV--------KKAHLG 344
+ + V S DG LLA G Q+ + H G
Sbjct: 1127 LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGG 1186
Query: 345 IVTALAFSYDSRALVSA 361
VT + FS DS+ LVSA
Sbjct: 1187 WVTDVCFSPDSKTLVSA 1203
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 75/193 (38%), Gaps = 12/193 (6%)
Query: 183 AAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLAS-S 241
A G E+G +++ + P+ + + +V+ + F+ DGK L+S +VW+ +
Sbjct: 984 AFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD 1043
Query: 242 AVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVRE 301
V +E + F + S L + + ++ WN T + R +
Sbjct: 1044 YVFLQAHQETVKDFRLLQDSRLLSWSF----------DGTVKVWNVITGRIERDFTCHQG 1093
Query: 302 PVSSFNVSADGKLLAVGTAXXXXXXXXXXXLQVRTAVKKAHLGIVTALAFSYDSRALVSA 361
V S +S+D + +A L + K H G V AFS D L +
Sbjct: 1094 TVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL-KGHNGCVRCSAFSLDGILLATG 1152
Query: 362 SMDSSVRVTVIED 374
+ +R+ + D
Sbjct: 1153 DDNGEIRIWNVSD 1165
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Query: 174 TFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPG 233
F +G A+ + L+VFK + E +L+ V +FS D ++ +
Sbjct: 629 CFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKV 688
Query: 234 RVWDLASSAVATPLAKENDELFASCRFSPLNN 265
++WD A+ + E+ E C F+ +N
Sbjct: 689 KIWDSATGKLVHTY-DEHSEQVNCCHFTNKSN 719
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 79/206 (38%), Gaps = 13/206 (6%)
Query: 173 LTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHA-SVKDLSFSPDGKFLVSLGNRG 231
T S + A GS + L+++ E N H SV FSPD + L S G
Sbjct: 714 FTNKSNHLLLATGSNDFFLKLWDLNQKEC-RNTMFGHTNSVNHCRFSPDDELLASCSADG 772
Query: 232 PGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTW--NTTT 289
R+WD+ S A N + F P + + ++ + + G I+ N
Sbjct: 773 TLRLWDVRS---ANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL 829
Query: 290 WKRIRTKQVVREPVSSFNVS------ADGKLLAVGTAXXXXXXXXXXXLQVRTAVKKAHL 343
I T ++ E + + + + LAV +++ A + HL
Sbjct: 830 LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL 889
Query: 344 GIVTALAFSYDSRALVSASMDSSVRV 369
V + FS D + ++AS D ++RV
Sbjct: 890 SWVHGVMFSPDGSSFLTASDDQTIRV 915
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAH-ASVKDLSFSPDGKFLVS 226
G L+ S+ T F++ S + +++ + L L+E + H V+ +FS DG L +
Sbjct: 1093 GTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP-LHELKGHNGCVRCSAFSLDGILLAT 1151
Query: 227 LGNRGPGRVWDLA 239
+ G R+W+++
Sbjct: 1152 GDDNGEIRIWNVS 1164
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 7/137 (5%)
Query: 180 TIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLA 239
++ + SE+ ++V+ + + + SV+D+SF GK L S ++WD
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180
Query: 240 SSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVV 299
+ +D +S P N D+++ + R +I W T ++T
Sbjct: 181 GFECIRTMHG-HDHNVSSVSIMP--NGDHIVSAS----RDKTIKMWEVQTGYCVKTFTGH 233
Query: 300 REPVSSFNVSADGKLLA 316
RE V + DG L+A
Sbjct: 234 REWVRMVRPNQDGTLIA 250
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/68 (20%), Positives = 33/68 (48%)
Query: 173 LTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGP 232
++FD G + A+ S + ++++ + E I +V +S P+G +VS
Sbjct: 156 ISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT 215
Query: 233 GRVWDLAS 240
++W++ +
Sbjct: 216 IKMWEVQT 223
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 18/193 (9%)
Query: 178 EGTIFAAGSENGNLRVFKW--PSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRV 235
+G G E L ++ P+ I + + + L+ SPD K S + G V
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167
Query: 236 WDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRT 295
WDL + + D ASC ++N+ L+ + + ++ +W+ ++++
Sbjct: 168 WDLHNQTLVRQFQGHTDG--ASCI--DISNDGTKLWTGGLDN---TVRSWDLREGRQLQQ 220
Query: 296 KQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXXLQVRTAVK---KAHLGIVTALAFS 352
+ + S G+ LAVG L V K H V +L F+
Sbjct: 221 HDFTSQ-IFSLGYCPTGEWLAVGM-----ESSNVEVLHVNKPDKYQLHLHESCVLSLKFA 274
Query: 353 YDSRALVSASMDS 365
Y + VS D+
Sbjct: 275 YCGKWFVSTGKDN 287
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 5/107 (4%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
++ PDG L+ G +WDLA+ TP K A ++ + D +
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAA---PTPRIKAELTSSAPACYALAISPDSKVC 156
Query: 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVG 318
+ +D +I W+ +R Q + S ++S DG L G
Sbjct: 157 FSCCSD--GNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTG 201
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 41/110 (37%), Gaps = 9/110 (8%)
Query: 119 MAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSE 178
+A PH D + + R+ WD ++G + + L QQ
Sbjct: 175 VAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQ-------- 226
Query: 179 GTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDG-KFLVSL 227
+F G ENG + + S +L+ + V L FSP FL SL
Sbjct: 227 SEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASL 276
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 172 ALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAH--ASVKDLSFSPDGKFLVSLGN 229
A+ F G FA GS++ R+F + + ++ S + + +SFS G+ L++ +
Sbjct: 231 AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290
Query: 230 RGPGRVWDLASSAVATPLAKENDEL 254
VWD + A LA ++ +
Sbjct: 291 DFNCNVWDALKADRAGVLAGHDNRV 315
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 87/199 (43%), Gaps = 14/199 (7%)
Query: 172 ALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHAS-VKDLSFSPDGKFLVSLGNR 230
+ F +G A+ S++ +++ W +L H+S V+ ++FSPDG+ + S +
Sbjct: 349 GVAFSPDGQTIASASDDKTVKL--WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD 406
Query: 231 GPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW 290
++W+ + T L + ++ FSP +D IA+ +D ++ WN
Sbjct: 407 KTVKLWNRNGQLLQT-LTGHSSSVWG-VAFSP---DDQT--IASASDD-KTVKLWNRNG- 457
Query: 291 KRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXXLQVRTAVKKAHLGIVTALA 350
+ ++T V S DG+ +A + ++T H V +A
Sbjct: 458 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT--GHSSSVRGVA 515
Query: 351 FSYDSRALVSASMDSSVRV 369
FS D + + SAS D +V++
Sbjct: 516 FSPDGQTIASASDDKTVKL 534
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 12/167 (7%)
Query: 204 NESEAHAS-VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSP 262
N EAH+S V+ ++FSPDG+ + S + ++W+ + T L + ++ FSP
Sbjct: 10 NRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVWG-VAFSP 67
Query: 263 LNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXX 322
D +A D+ ++ WN + ++T V S DG+ +A +
Sbjct: 68 ----DGQTIASASDDK--TVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 120
Query: 323 XXXXXXXXXLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
++T H V +AFS D + + SAS D +V++
Sbjct: 121 TVKLWNRNGQLLQTLT--GHSSSVWGVAFSPDGQTIASASDDKTVKL 165
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 81/199 (40%), Gaps = 14/199 (7%)
Query: 172 ALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHAS-VKDLSFSPDGKFLVSLGNR 230
+ F +G A+ S++ +++ W +L H+S V+ ++FSPDG+ + S +
Sbjct: 185 GVAFSPDGQTIASASDDKTVKL--WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD 242
Query: 231 GPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW 290
++W+ + T + F P D +A D+ ++ WN
Sbjct: 243 KTVKLWNRNGQLLQTLTGHSSS--VNGVAFRP----DGQTIASASDDK--TVKLWNRNG- 293
Query: 291 KRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXXLQVRTAVKKAHLGIVTALA 350
+ ++T V S DG+ +A + ++T H V +A
Sbjct: 294 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLT--GHSSSVWGVA 351
Query: 351 FSYDSRALVSASMDSSVRV 369
FS D + + SAS D +V++
Sbjct: 352 FSPDGQTIASASDDKTVKL 370
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 81/199 (40%), Gaps = 14/199 (7%)
Query: 172 ALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHAS-VKDLSFSPDGKFLVSLGNR 230
+ F +G A+ S++ +++ W +L H+S V ++FSPDG+ + S +
Sbjct: 21 GVAFSPDGQTIASASDDKTVKL--WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 78
Query: 231 GPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW 290
++W+ + T + FSP D +A D+ ++ WN
Sbjct: 79 KTVKLWNRNGQLLQTLTGHSSS--VRGVAFSP----DGQTIASASDDK--TVKLWNRNG- 129
Query: 291 KRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXXLQVRTAVKKAHLGIVTALA 350
+ ++T V S DG+ +A + ++T H V +A
Sbjct: 130 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT--GHSSSVWGVA 187
Query: 351 FSYDSRALVSASMDSSVRV 369
FS D + + SAS D +V++
Sbjct: 188 FSPDGQTIASASDDKTVKL 206
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 172 ALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAH--ASVKDLSFSPDGKFLVSLGN 229
A+ F G FA GS++ R+F + + ++ S + + +SFS G+ L++ +
Sbjct: 231 AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290
Query: 230 RGPGRVWDLASSAVATPLAKENDEL 254
VWD + A LA ++ +
Sbjct: 291 DFNCNVWDALKADRAGVLAGHDNRV 315
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 172 ALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAH--ASVKDLSFSPDGKFLVSLGN 229
A+ F G FA GS++ R+F + + ++ S + + +SFS G+ L++ +
Sbjct: 242 AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 301
Query: 230 RGPGRVWDLASSAVATPLAKENDEL 254
VWD + A LA ++ +
Sbjct: 302 DFNCNVWDALKADRAGVLAGHDNRV 326
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 172 ALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAH--ASVKDLSFSPDGKFLVSLGN 229
A+ F G FA GS++ R+F + + ++ S + + +SFS G+ L++ +
Sbjct: 231 AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290
Query: 230 RGPGRVWDLASSAVATPLAKENDEL 254
VWD + A LA ++ +
Sbjct: 291 DFNCNVWDALKADRAGVLAGHDNRV 315
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 172 ALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAH--ASVKDLSFSPDGKFLVSLGN 229
A+ F G FA GS++ R+F + + ++ S + + +SFS G+ L++ +
Sbjct: 231 AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290
Query: 230 RGPGRVWDLASSAVATPLAKENDEL 254
VWD + A LA ++ +
Sbjct: 291 DFNCNVWDALKADRAGVLAGHDNRV 315
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 6/143 (4%)
Query: 177 SEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVW 236
S+G +GS +G LR++ + V ++FS D + +VS ++W
Sbjct: 96 SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 155
Query: 237 DLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTK 296
+ T + + E + RFSP N + ++ D+ + WN K ++T
Sbjct: 156 NTLGVCKYTVQDESHSEWVSCVRFSP--NSSNPIIVSCGWDKLVKV--WNLANCK-LKTN 210
Query: 297 QVVREP-VSSFNVSADGKLLAVG 318
+ +++ VS DG L A G
Sbjct: 211 HIGHTGYLNTVTVSPDGSLCASG 233
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 6/143 (4%)
Query: 177 SEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVW 236
S+G +GS +G LR++ + V ++FS D + +VS ++W
Sbjct: 73 SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 132
Query: 237 DLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTK 296
+ T + + E + RFSP N + ++ D+ + WN K ++T
Sbjct: 133 NTLGVCKYTVQDESHSEWVSCVRFSP--NSSNPIIVSCGWDKLVKV--WNLANCK-LKTN 187
Query: 297 QVVREP-VSSFNVSADGKLLAVG 318
+ +++ VS DG L A G
Sbjct: 188 HIGHTGYLNTVTVSPDGSLCASG 210
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 175 FDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGR 234
FD +G + + + F + + L ++ V + FSP KFL + G+ G
Sbjct: 223 FDDQGDDYNSS------KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIIS 276
Query: 235 VWDLASSAVATPLAKENDE 253
W+L + AK N++
Sbjct: 277 CWNLQTRKKIKNFAKFNED 295
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 175 FDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGR 234
FD +G + + + F + + L ++ V + FSP KFL + G+ G
Sbjct: 223 FDDQGDDYNSS------KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIIS 276
Query: 235 VWDLASSAVATPLAKENDE 253
W+L + AK N++
Sbjct: 277 CWNLQTRKKIKNFAKFNED 295
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 175 FDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGR 234
FD +G + + + F + + L ++ V + FSP KFL + G+ G
Sbjct: 223 FDDQGDDYNSS------KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIIS 276
Query: 235 VWDLASSAVATPLAKENDE 253
W+L + AK N++
Sbjct: 277 CWNLQTRKKIKNFAKFNED 295
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 208 AHAS-VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDEL 254
AH+S V LSF+ G+ L S G G R WD+ + T L D++
Sbjct: 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 336
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 175 FDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGR 234
FD +G + + + F + + L ++ V + FSP KFL + G+ G
Sbjct: 223 FDDQGDDYNSS------KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIIS 276
Query: 235 VWDLASSAVATPLAKENDE 253
W+L + AK N++
Sbjct: 277 CWNLQTRKKIKNFAKFNED 295
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
V+D+ S DG+F +S G R+WDLA+ ++ S FS L+N V
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVL-SVAFS-LDNRQIV-- 488
Query: 272 IAAITDRGASIVTWNT 287
+A DR +I WNT
Sbjct: 489 -SASRDR--TIKLWNT 501
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 208 AHAS-VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDEL 254
AH+S V LSF+ G+ L S G G R WD+ + T L D++
Sbjct: 299 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 346
>pdb|2JID|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
pdb|2JID|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
Length = 736
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 175 FDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLV 225
+ E I +E GN VF LE + H S+ D S SPDG+F++
Sbjct: 40 YKQENNILVFNAEYGNSSVF----LENSTFDEFGH-SINDYSISPDGQFIL 85
>pdb|2QT9|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QT9|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
Length = 766
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 175 FDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLV 225
+ E I +E GN VF LE + H S+ D S SPDG+F++
Sbjct: 70 YKQENNILVFNAEYGNSSVF----LENSTFDEFGH-SINDYSISPDGQFIL 115
>pdb|3CCB|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3G0B|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0C|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0D|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0G|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3O95|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O9V|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3OPM|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|4G1F|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
Length = 740
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 175 FDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLV 225
+ E I +E GN VF LE + H S+ D S SPDG+F++
Sbjct: 44 YKQENNILVFNAEYGNSSVF----LENSTFDEFGH-SINDYSISPDGQFIL 89
>pdb|1R9M|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution
Length = 733
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 175 FDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLV 225
+ E I +E GN VF LE + H S+ D S SPDG+F++
Sbjct: 37 YKQENNILVFNAEYGNSSVF----LENSTFDEFGH-SINDYSISPDGQFIL 82
>pdb|1J2E|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1J2E|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1WCY|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|1WCY|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|3VJM|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJM|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJK|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJK|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJL|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
pdb|3VJL|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
Length = 740
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 175 FDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLV 225
+ E I +E GN VF LE + H S+ D S SPDG+F++
Sbjct: 38 YKQENNILVFNAEYGNSSVF----LENSTFDEFGH-SINDYSISPDGQFIL 83
>pdb|2BGR|A Chain A, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
pdb|2BGR|B Chain B, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
Length = 738
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 175 FDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLV 225
+ E I +E GN VF LE + H S+ D S SPDG+F++
Sbjct: 42 YKQENNILVFNAEYGNSSVF----LENSTFDEFGH-SINDYSISPDGQFIL 87
>pdb|4A5S|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
pdb|4A5S|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
Length = 740
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 175 FDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLV 225
+ E I +E GN VF LE + H S+ D S SPDG+F++
Sbjct: 32 YKQENNILVFNAEYGNSSVF----LENSTFDEFGH-SINDYSISPDGQFIL 77
>pdb|3Q8W|A Chain A, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
pdb|3Q8W|B Chain B, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
Length = 732
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 175 FDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLV 225
+ E I +E GN VF LE + H S+ D S SPDG+F++
Sbjct: 32 YKQENNILVFNAEYGNSSVF----LENSTFDEFGH-SINDYSISPDGQFIL 77
>pdb|2QJR|A Chain A, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|2QJR|B Chain B, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|3F8S|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3F8S|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 175 FDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLV 225
+ E I +E GN VF LE + H S+ D S SPDG+F++
Sbjct: 40 YKQENNILVFNAEYGNSSVF----LENSTFDEFGH-SINDYSISPDGQFIL 85
>pdb|2G5P|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5P|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5T|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G5T|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G63|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2I03|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2OQV|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2OQV|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2I78|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2OAG|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
Length = 726
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 175 FDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLV 225
+ E I +E GN VF LE + H S+ D S SPDG+F++
Sbjct: 32 YKQENNILVFNAEYGNSSVF----LENSTFDEFGH-SINDYSISPDGQFIL 77
>pdb|3QBJ|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3QBJ|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 175 FDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLV 225
+ E I +E GN VF LE + H S+ D S SPDG+F++
Sbjct: 40 YKQENNILVFNAEYGNSSVF----LENSTFDEFGH-SINDYSISPDGQFIL 85
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 146 NTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPS---LEI 201
+T +R ++I+ + + + G ++ F +G F GS++G R+F + L++
Sbjct: 227 DTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV 286
Query: 202 ILNESEAHAS----VKDLSFSPDGKFLVSLGNRGPGRVWD 237
E + + + V ++FS G+ L + + G VWD
Sbjct: 287 YNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWD 326
>pdb|1N1M|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1N1M|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1NU6|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU6|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU8|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1NU8|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1TK3|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TK3|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TKR|A Chain A, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1TKR|B Chain B, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1W1I|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1RWQ|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|1RWQ|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|2BGN|A Chain A, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|B Chain B, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|C Chain C, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|D Chain D, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2AJL|I Chain I, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2AJL|J Chain J, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2BUB|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2BUB|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2OGZ|A Chain A, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OGZ|B Chain B, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OQI|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|C Chain C, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|D Chain D, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OLE|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|2OLE|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|3BJM|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3BJM|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3EIO|A Chain A, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3EIO|B Chain B, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3H0C|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3H0C|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3KWF|A Chain A, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3KWF|B Chain B, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3OC0|A Chain A, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3OC0|B Chain B, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|A Chain A, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|B Chain B, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|4DSA|A Chain A, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSA|B Chain B, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSZ|A Chain A, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DSZ|B Chain B, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DTC|A Chain A, Crystal Structure Of Dpp-iv With Compound C5
pdb|4DTC|B Chain B, Crystal Structure Of Dpp-iv With Compound C5
Length = 728
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 175 FDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLV 225
+ E I +E GN VF LE + H S+ D S SPDG+F++
Sbjct: 32 YKQENNILVFNAEYGNSSVF----LENSTFDEFGH-SINDYSISPDGQFIL 77
>pdb|2RGU|A Chain A, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
pdb|2RGU|B Chain B, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
Length = 734
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 175 FDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLV 225
+ E I +E GN VF LE + H S+ D S SPDG+F++
Sbjct: 32 YKQENNILVFNAEYGNSSVF----LENSTFDEFGH-SINDYSISPDGQFIL 77
>pdb|1X70|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|1X70|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|2FJP|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2FJP|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2HHA|A Chain A, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2HHA|B Chain B, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2IIT|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIT|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIV|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2IIV|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2OPH|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2OPH|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2P8S|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2P8S|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2QOE|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|2QOE|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|3C43|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C43|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C45|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3C45|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3D4L|A Chain A, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|3D4L|B Chain B, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|2QKY|A Chain A, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|B Chain B, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|C Chain C, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|D Chain D, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|3HAB|A Chain A, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAB|B Chain B, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAC|A Chain A, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
pdb|3HAC|B Chain B, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
Length = 728
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 175 FDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLV 225
+ E I +E GN VF LE + H S+ D S SPDG+F++
Sbjct: 32 YKQENNILVFNAEYGNSSVF----LENSTFDEFGH-SINDYSISPDGQFIL 77
>pdb|1PFQ|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
pdb|1PFQ|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
Length = 731
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 175 FDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLV 225
+ E I +E GN VF LE + H S+ D S SPDG+F++
Sbjct: 35 YKQENNILVFNAEYGNSSVF----LENSTFDEFGH-SINDYSISPDGQFIL 80
>pdb|2ONC|A Chain A, Crystal Structure Of Human Dpp-4
pdb|2ONC|B Chain B, Crystal Structure Of Human Dpp-4
pdb|2ONC|C Chain C, Crystal Structure Of Human Dpp-4
pdb|2ONC|D Chain D, Crystal Structure Of Human Dpp-4
Length = 731
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 175 FDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLV 225
+ E I +E GN VF LE + H S+ D S SPDG+F++
Sbjct: 35 YKQENNILVFNAEYGNSSVF----LENSTFDEFGH-SINDYSISPDGQFIL 80
>pdb|1R9N|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
Length = 739
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 175 FDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLV 225
+ E I +E GN VF LE + H S+ D S SPDG+F++
Sbjct: 43 YKQENNILVFNAEYGNSSVF----LENSTFDEFGH-SINDYSISPDGQFIL 88
>pdb|1U8E|A Chain A, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
pdb|1U8E|B Chain B, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
Length = 728
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 175 FDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLV 225
+ E I +E GN VF LE + H S+ D S SPDG+F++
Sbjct: 32 YKQENNILVFNAEYGNSSVF----LENSTFDEFGH-SINDYSISPDGQFIL 77
>pdb|3NOX|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3NOX|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3SWW|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SWW|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3Q0T|A Chain A, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
pdb|3Q0T|B Chain B, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
Length = 753
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 175 FDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLV 225
+ E I +E GN VF LE + H S+ D S SPDG+F++
Sbjct: 34 YKQENNILVFNAEYGNSSVF----LENSTFDEFGH-SINDYSISPDGQFIL 79
>pdb|2RIP|A Chain A, Structure Of Dppiv In Complex With An Inhibitor
Length = 729
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 175 FDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLV 225
+ E I +E GN VF LE + H S+ D S SPDG+F++
Sbjct: 33 YKQENNILVFNAEYGNSSVF----LENSTFDEFGH-SINDYSISPDGQFIL 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,358,620
Number of Sequences: 62578
Number of extensions: 376178
Number of successful extensions: 1129
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 910
Number of HSP's gapped (non-prelim): 198
length of query: 406
length of database: 14,973,337
effective HSP length: 101
effective length of query: 305
effective length of database: 8,652,959
effective search space: 2639152495
effective search space used: 2639152495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)