Query 015490
Match_columns 406
No_of_seqs 723 out of 3836
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 06:48:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015490.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015490hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0272 U4/U6 small nuclear ri 100.0 3.1E-44 6.7E-49 303.4 22.9 269 67-371 185-458 (459)
2 KOG0271 Notchless-like WD40 re 100.0 2.5E-43 5.5E-48 294.4 24.7 257 90-371 138-479 (480)
3 KOG0271 Notchless-like WD40 re 100.0 2.6E-43 5.7E-48 294.3 22.6 254 105-381 107-447 (480)
4 KOG0315 G-protein beta subunit 100.0 1.5E-39 3.2E-44 257.2 29.9 260 103-382 30-297 (311)
5 KOG0272 U4/U6 small nuclear ri 100.0 3.9E-41 8.5E-46 284.6 19.9 251 108-380 170-425 (459)
6 KOG0279 G protein beta subunit 100.0 5.9E-39 1.3E-43 257.9 27.6 264 104-383 6-272 (315)
7 KOG0286 G-protein beta subunit 100.0 3.3E-38 7.1E-43 255.1 31.5 273 68-371 66-343 (343)
8 KOG0263 Transcription initiati 100.0 4.3E-39 9.4E-44 292.4 24.6 271 100-378 365-654 (707)
9 KOG0284 Polyadenylation factor 100.0 1.3E-38 2.8E-43 268.3 17.3 272 68-374 107-381 (464)
10 KOG0279 G protein beta subunit 100.0 2E-35 4.3E-40 237.6 30.4 249 102-374 52-314 (315)
11 KOG0291 WD40-repeat-containing 100.0 1.3E-35 2.7E-40 268.0 32.2 258 104-381 298-558 (893)
12 KOG0286 G-protein beta subunit 100.0 2.3E-35 5E-40 238.7 28.9 256 105-380 47-310 (343)
13 KOG0295 WD40 repeat-containing 100.0 5.2E-35 1.1E-39 243.3 26.2 264 90-372 131-405 (406)
14 KOG0273 Beta-transducin family 100.0 3.3E-35 7.2E-40 252.0 25.3 243 113-379 235-488 (524)
15 KOG0771 Prolactin regulatory e 100.0 1.2E-34 2.6E-39 246.1 26.5 235 170-406 147-397 (398)
16 KOG0296 Angio-associated migra 100.0 7.3E-34 1.6E-38 236.6 30.2 261 90-373 87-398 (399)
17 KOG0284 Polyadenylation factor 100.0 8.9E-36 1.9E-40 251.2 15.1 250 112-383 95-347 (464)
18 KOG0295 WD40 repeat-containing 100.0 1.4E-34 3E-39 240.7 21.0 257 104-382 99-373 (406)
19 KOG0645 WD40 repeat protein [G 100.0 2E-32 4.3E-37 219.5 29.9 252 105-373 6-311 (312)
20 KOG0318 WD40 repeat stress pro 100.0 2.5E-32 5.4E-37 237.5 31.5 264 88-377 128-564 (603)
21 KOG0273 Beta-transducin family 100.0 1.2E-32 2.7E-37 236.3 29.0 261 90-373 258-523 (524)
22 KOG0263 Transcription initiati 100.0 1.6E-33 3.6E-38 256.2 23.4 206 105-331 443-650 (707)
23 KOG0266 WD40 repeat-containing 100.0 1.8E-32 4E-37 254.9 30.6 256 106-381 151-417 (456)
24 KOG0266 WD40 repeat-containing 100.0 1.9E-32 4.2E-37 254.8 30.7 249 105-373 195-454 (456)
25 KOG0291 WD40-repeat-containing 100.0 4.8E-32 1E-36 244.9 31.8 282 67-383 317-622 (893)
26 KOG0293 WD40 repeat-containing 100.0 1.6E-33 3.4E-38 238.0 20.3 257 100-375 211-515 (519)
27 cd00200 WD40 WD40 domain, foun 100.0 3E-31 6.5E-36 233.9 35.5 268 68-371 20-289 (289)
28 KOG0285 Pleiotropic regulator 100.0 3.2E-33 7E-38 232.1 21.1 250 104-377 142-393 (460)
29 KOG0973 Histone transcription 100.0 2.1E-32 4.5E-37 257.3 27.4 326 9-376 5-358 (942)
30 KOG0282 mRNA splicing factor [ 100.0 2E-33 4.2E-38 242.0 18.3 259 87-371 237-503 (503)
31 KOG0319 WD40-repeat-containing 100.0 3.7E-32 8E-37 245.2 26.3 285 57-374 324-620 (775)
32 KOG0278 Serine/threonine kinas 100.0 4.6E-33 1E-37 220.6 17.9 251 104-378 50-302 (334)
33 KOG0265 U5 snRNP-specific prot 100.0 3.1E-32 6.8E-37 221.4 22.8 257 103-381 37-304 (338)
34 KOG0276 Vesicle coat complex C 100.0 1E-32 2.2E-37 244.4 21.4 255 107-382 7-266 (794)
35 KOG0316 Conserved WD40 repeat- 100.0 2.6E-32 5.6E-37 214.6 21.0 255 103-383 7-267 (307)
36 KOG0315 G-protein beta subunit 100.0 4.5E-31 9.7E-36 209.3 27.9 238 88-351 62-308 (311)
37 cd00200 WD40 WD40 domain, foun 100.0 4.4E-31 9.6E-36 232.8 31.2 254 106-381 2-257 (289)
38 KOG0643 Translation initiation 100.0 2.9E-30 6.2E-35 206.7 26.1 247 107-375 4-319 (327)
39 PLN00181 protein SPA1-RELATED; 100.0 3.5E-30 7.6E-35 257.0 32.9 254 109-377 479-742 (793)
40 KOG0318 WD40 repeat stress pro 100.0 1.6E-29 3.5E-34 220.0 31.8 265 90-377 40-354 (603)
41 KOG0265 U5 snRNP-specific prot 100.0 6.8E-30 1.5E-34 207.8 27.5 256 88-371 70-336 (338)
42 KOG1407 WD40 repeat protein [F 100.0 8.5E-31 1.8E-35 209.1 21.5 256 107-383 14-271 (313)
43 PLN00181 protein SPA1-RELATED; 100.0 4.1E-29 8.9E-34 249.3 38.9 243 106-372 526-792 (793)
44 KOG0292 Vesicle coat complex C 100.0 3.5E-30 7.5E-35 236.7 27.5 275 67-377 19-325 (1202)
45 KOG0277 Peroxisomal targeting 100.0 1E-30 2.3E-35 207.8 20.6 242 111-372 58-308 (311)
46 KOG0296 Angio-associated migra 100.0 1.8E-30 3.9E-35 216.4 22.6 252 105-380 56-363 (399)
47 KOG0313 Microtubule binding pr 100.0 1.5E-29 3.2E-34 212.0 27.1 270 68-373 114-418 (423)
48 KOG0282 mRNA splicing factor [ 100.0 1.5E-31 3.2E-36 230.5 15.6 260 101-382 202-471 (503)
49 KOG0281 Beta-TrCP (transducin 100.0 9.7E-32 2.1E-36 222.7 13.2 233 112-377 196-432 (499)
50 KOG0305 Anaphase promoting com 100.0 1.6E-29 3.4E-34 226.3 28.0 260 90-375 198-463 (484)
51 KOG1446 Histone H3 (Lys4) meth 100.0 7.8E-29 1.7E-33 203.5 28.4 255 104-382 5-271 (311)
52 KOG0281 Beta-TrCP (transducin 100.0 8.2E-31 1.8E-35 217.2 15.9 249 90-376 218-480 (499)
53 KOG0292 Vesicle coat complex C 100.0 4E-30 8.8E-35 236.2 22.0 252 109-381 5-288 (1202)
54 KOG0283 WD40 repeat-containing 100.0 1.4E-29 3E-34 232.6 25.3 261 106-376 259-579 (712)
55 KOG0285 Pleiotropic regulator 100.0 5.7E-29 1.2E-33 207.0 26.5 260 90-376 174-442 (460)
56 KOG0277 Peroxisomal targeting 100.0 2E-29 4.3E-34 200.5 21.2 245 117-377 12-269 (311)
57 KOG0640 mRNA cleavage stimulat 100.0 6.6E-29 1.4E-33 203.0 24.1 253 104-373 163-426 (430)
58 KOG0319 WD40-repeat-containing 100.0 1.1E-28 2.5E-33 222.8 26.8 267 90-382 304-586 (775)
59 PTZ00421 coronin; Provisional 100.0 7.9E-28 1.7E-32 223.1 32.9 238 107-354 69-314 (493)
60 KOG0276 Vesicle coat complex C 100.0 1.3E-28 2.8E-33 218.5 25.3 274 68-376 24-301 (794)
61 KOG0306 WD40-repeat-containing 100.0 1.8E-28 3.9E-33 221.9 26.3 273 86-381 343-630 (888)
62 PTZ00421 coronin; Provisional 100.0 1.4E-27 3E-32 221.5 32.9 207 165-378 73-295 (493)
63 KOG0310 Conserved WD40 repeat- 100.0 2.6E-28 5.6E-33 210.9 25.4 247 105-376 60-312 (487)
64 KOG0275 Conserved WD40 repeat- 100.0 4.6E-29 9.9E-34 205.2 19.4 281 62-371 218-507 (508)
65 KOG0306 WD40-repeat-containing 100.0 9.2E-28 2E-32 217.3 27.4 247 104-374 405-665 (888)
66 KOG0641 WD40 repeat protein [G 100.0 1.2E-26 2.5E-31 181.9 28.8 258 108-374 27-304 (350)
67 KOG0310 Conserved WD40 repeat- 100.0 2.5E-28 5.3E-33 211.0 21.3 253 109-383 22-278 (487)
68 KOG0316 Conserved WD40 repeat- 100.0 4.5E-27 9.7E-32 185.2 25.2 265 68-373 28-299 (307)
69 KOG0641 WD40 repeat protein [G 100.0 2.8E-26 6E-31 179.8 28.8 252 106-373 82-349 (350)
70 KOG0772 Uncharacterized conser 100.0 3.6E-28 7.8E-33 211.2 19.9 267 101-383 155-455 (641)
71 KOG0294 WD40 repeat-containing 100.0 2.5E-27 5.5E-32 194.2 23.5 249 102-377 32-285 (362)
72 KOG0275 Conserved WD40 repeat- 100.0 2E-28 4.3E-33 201.5 16.8 260 111-383 211-477 (508)
73 KOG0645 WD40 repeat protein [G 100.0 2.5E-26 5.5E-31 184.6 25.7 200 166-373 13-225 (312)
74 KOG0288 WD40 repeat protein Ti 100.0 7.5E-28 1.6E-32 203.8 17.4 255 88-371 198-459 (459)
75 KOG0299 U3 snoRNP-associated p 100.0 8.5E-27 1.8E-31 200.1 23.9 260 106-376 135-413 (479)
76 KOG0288 WD40 repeat protein Ti 100.0 3.1E-28 6.8E-33 206.1 15.0 256 102-380 164-424 (459)
77 KOG0772 Uncharacterized conser 100.0 5.9E-27 1.3E-31 203.7 23.2 275 85-373 187-487 (641)
78 PTZ00420 coronin; Provisional 100.0 1.6E-25 3.4E-30 208.8 34.3 240 104-355 65-318 (568)
79 KOG0264 Nucleosome remodeling 100.0 2E-26 4.2E-31 197.8 25.8 257 108-373 119-404 (422)
80 PTZ00420 coronin; Provisional 100.0 9.1E-26 2E-30 210.4 32.5 202 166-375 73-295 (568)
81 KOG0973 Histone transcription 100.0 5.8E-27 1.3E-31 220.8 24.3 260 111-379 11-318 (942)
82 KOG0289 mRNA splicing factor [ 100.0 1.8E-26 3.8E-31 196.7 24.3 248 104-372 252-505 (506)
83 KOG0289 mRNA splicing factor [ 100.0 1.6E-26 3.5E-31 197.0 23.8 238 114-371 220-460 (506)
84 KOG1446 Histone H3 (Lys4) meth 100.0 1.3E-24 2.9E-29 178.7 33.7 271 68-376 25-306 (311)
85 KOG0268 Sof1-like rRNA process 100.0 1.2E-27 2.5E-32 199.6 15.1 262 90-381 90-353 (433)
86 KOG0313 Microtubule binding pr 100.0 1.6E-26 3.4E-31 194.0 21.7 245 104-376 97-379 (423)
87 KOG0640 mRNA cleavage stimulat 100.0 5.4E-27 1.2E-31 191.9 18.5 270 105-381 104-391 (430)
88 KOG1407 WD40 repeat protein [F 100.0 2.5E-25 5.5E-30 177.9 27.1 258 88-373 43-311 (313)
89 KOG0274 Cdc4 and related F-box 100.0 7.1E-26 1.5E-30 210.4 26.8 256 92-381 231-490 (537)
90 KOG0643 Translation initiation 99.9 1.6E-25 3.5E-30 179.6 21.9 209 165-380 8-227 (327)
91 KOG0308 Conserved WD40 repeat- 99.9 3.9E-26 8.4E-31 203.8 19.1 244 118-376 29-288 (735)
92 KOG0270 WD40 repeat-containing 99.9 1.8E-25 3.8E-30 191.3 22.0 294 68-378 136-454 (463)
93 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.2E-23 2.6E-28 187.5 35.2 264 90-382 12-288 (300)
94 KOG0274 Cdc4 and related F-box 99.9 1.5E-25 3.4E-30 208.1 23.1 241 111-382 206-450 (537)
95 KOG0639 Transducin-like enhanc 99.9 7.5E-26 1.6E-30 196.3 19.0 277 61-372 423-703 (705)
96 KOG0647 mRNA export protein (c 99.9 5.1E-25 1.1E-29 179.7 22.3 247 111-380 25-288 (347)
97 KOG0283 WD40 repeat-containing 99.9 1.2E-25 2.5E-30 206.9 20.8 207 165-381 265-540 (712)
98 KOG0293 WD40 repeat-containing 99.9 2.2E-25 4.7E-30 189.0 20.3 210 104-331 260-514 (519)
99 KOG0646 WD40 repeat protein [G 99.9 7.2E-25 1.6E-29 188.7 23.3 213 163-382 77-316 (476)
100 KOG0300 WD40 repeat-containing 99.9 3.7E-25 8.1E-30 181.8 20.4 266 103-377 180-480 (481)
101 KOG0305 Anaphase promoting com 99.9 1.1E-24 2.3E-29 195.5 24.9 230 68-332 228-463 (484)
102 KOG2055 WD40 repeat protein [G 99.9 3.4E-24 7.4E-29 184.2 26.0 277 68-373 224-512 (514)
103 KOG1036 Mitotic spindle checkp 99.9 3.9E-24 8.4E-29 175.2 23.1 266 113-405 13-302 (323)
104 KOG1408 WD40 repeat protein [F 99.9 2.1E-24 4.6E-29 194.7 23.5 286 86-374 343-714 (1080)
105 KOG0268 Sof1-like rRNA process 99.9 7.2E-26 1.6E-30 188.9 12.9 247 104-377 57-306 (433)
106 KOG0308 Conserved WD40 repeat- 99.9 7.7E-25 1.7E-29 195.6 20.0 285 62-374 30-328 (735)
107 KOG0639 Transducin-like enhanc 99.9 3.7E-25 8.1E-30 192.0 17.1 254 111-382 417-672 (705)
108 KOG0278 Serine/threonine kinas 99.9 1.5E-25 3.3E-30 178.1 13.0 251 105-381 6-262 (334)
109 KOG2096 WD40 repeat protein [G 99.9 2.7E-24 5.8E-29 176.8 20.2 249 105-371 78-400 (420)
110 KOG1539 WD repeat protein [Gen 99.9 1.9E-23 4.1E-28 191.7 27.9 196 168-373 449-648 (910)
111 KOG0269 WD40 repeat-containing 99.9 4.1E-25 8.9E-30 201.0 16.9 250 114-375 40-298 (839)
112 KOG0299 U3 snoRNP-associated p 99.9 1.2E-23 2.6E-28 180.8 23.9 238 110-372 199-455 (479)
113 KOG1332 Vesicle coat complex C 99.9 2.6E-24 5.6E-29 170.6 17.4 256 109-375 7-288 (299)
114 KOG2055 WD40 repeat protein [G 99.9 1.6E-23 3.5E-28 180.1 23.2 250 113-382 213-476 (514)
115 KOG1274 WD40 repeat protein [G 99.9 2.2E-23 4.7E-28 193.3 25.3 243 110-374 10-263 (933)
116 KOG0300 WD40 repeat-containing 99.9 7.5E-24 1.6E-28 174.1 19.2 255 103-382 138-436 (481)
117 KOG0267 Microtubule severing p 99.9 1.3E-25 2.9E-30 202.6 9.4 236 107-364 22-259 (825)
118 KOG1036 Mitotic spindle checkp 99.9 1.9E-22 4.1E-27 165.4 26.5 280 56-376 13-319 (323)
119 KOG1539 WD repeat protein [Gen 99.9 3.3E-22 7.2E-27 183.6 30.7 260 104-383 193-616 (910)
120 KOG0646 WD40 repeat protein [G 99.9 1.8E-23 3.8E-28 180.2 20.7 221 111-354 79-330 (476)
121 KOG0647 mRNA export protein (c 99.9 2.5E-22 5.5E-27 164.1 25.7 271 55-361 26-311 (347)
122 KOG0264 Nucleosome remodeling 99.9 8.4E-24 1.8E-28 181.7 17.6 205 164-374 121-348 (422)
123 KOG0301 Phospholipase A2-activ 99.9 2.6E-22 5.7E-27 180.8 26.4 252 91-377 37-292 (745)
124 KOG2445 Nuclear pore complex c 99.9 4.1E-22 8.9E-27 163.3 24.4 250 110-373 10-318 (361)
125 KOG4283 Transcription-coupled 99.9 4.6E-23 1E-27 167.8 18.2 207 166-377 42-280 (397)
126 KOG2919 Guanine nucleotide-bin 99.9 1.5E-22 3.3E-27 166.8 20.9 257 117-380 53-335 (406)
127 KOG1007 WD repeat protein TSSC 99.9 3.8E-22 8.2E-27 162.1 22.4 273 86-374 39-362 (370)
128 KOG0269 WD40 repeat-containing 99.9 3.6E-23 7.8E-28 188.4 18.4 243 116-375 90-342 (839)
129 KOG0290 Conserved WD40 repeat- 99.9 5.7E-22 1.2E-26 161.2 23.2 274 83-370 69-362 (364)
130 KOG4378 Nuclear protein COP1 [ 99.9 1.1E-22 2.5E-27 176.5 19.7 245 114-376 35-283 (673)
131 KOG2106 Uncharacterized conser 99.9 4.6E-21 9.9E-26 166.9 29.1 279 58-374 202-522 (626)
132 KOG1274 WD40 repeat protein [G 99.9 1.6E-21 3.4E-26 181.1 27.7 261 68-368 24-295 (933)
133 KOG4378 Nuclear protein COP1 [ 99.9 2.9E-22 6.2E-27 174.0 20.9 220 115-355 81-305 (673)
134 KOG0307 Vesicle coat complex C 99.9 3.7E-23 8E-28 196.3 15.5 279 84-376 36-330 (1049)
135 KOG1063 RNA polymerase II elon 99.9 1.1E-21 2.4E-26 176.8 23.8 258 109-380 263-657 (764)
136 KOG4283 Transcription-coupled 99.9 6E-22 1.3E-26 161.4 20.1 217 108-333 38-279 (397)
137 KOG0267 Microtubule severing p 99.9 4.7E-24 1E-28 192.7 8.4 207 166-380 27-233 (825)
138 KOG2106 Uncharacterized conser 99.9 2E-20 4.2E-25 163.0 29.4 262 85-376 178-480 (626)
139 KOG2048 WD40 repeat protein [G 99.9 1.3E-20 2.9E-25 169.5 29.2 246 107-374 62-320 (691)
140 KOG0302 Ribosome Assembly prot 99.9 1E-21 2.3E-26 165.0 20.7 258 107-372 145-437 (440)
141 KOG0301 Phospholipase A2-activ 99.9 7.9E-22 1.7E-26 177.8 21.2 242 104-374 5-250 (745)
142 KOG2048 WD40 repeat protein [G 99.9 9E-21 2E-25 170.6 27.3 248 110-377 22-279 (691)
143 KOG0294 WD40 repeat-containing 99.9 3.3E-21 7.1E-26 158.5 22.4 198 166-377 42-241 (362)
144 KOG4328 WD40 protein [Function 99.9 7.3E-22 1.6E-26 169.9 19.0 263 104-380 177-457 (498)
145 KOG1273 WD40 repeat protein [G 99.9 1.1E-21 2.5E-26 161.2 19.2 199 170-373 26-226 (405)
146 KOG0321 WD40 repeat-containing 99.9 3.2E-21 6.8E-26 172.3 22.8 255 104-375 91-393 (720)
147 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.2E-19 2.5E-24 161.8 33.2 236 90-353 54-300 (300)
148 KOG0302 Ribosome Assembly prot 99.9 1.7E-21 3.7E-26 163.7 18.6 205 163-375 147-380 (440)
149 KOG1273 WD40 repeat protein [G 99.9 5.8E-21 1.3E-25 157.1 20.4 240 116-378 26-327 (405)
150 KOG1332 Vesicle coat complex C 99.9 4E-22 8.6E-27 158.3 12.5 203 166-373 10-241 (299)
151 KOG4328 WD40 protein [Function 99.9 3.3E-20 7.1E-25 159.8 24.2 266 90-373 211-495 (498)
152 KOG0307 Vesicle coat complex C 99.9 2.4E-22 5.3E-27 190.8 12.3 253 117-383 10-294 (1049)
153 KOG1034 Transcriptional repres 99.9 6.9E-21 1.5E-25 157.5 17.8 261 88-373 65-383 (385)
154 KOG2096 WD40 repeat protein [G 99.9 1.3E-20 2.7E-25 155.3 19.1 208 166-382 85-317 (420)
155 KOG1445 Tumor-specific antigen 99.9 1.1E-20 2.4E-25 168.9 19.9 103 273-376 643-753 (1012)
156 KOG0270 WD40 repeat-containing 99.9 2E-20 4.2E-25 160.6 19.4 238 117-376 129-407 (463)
157 KOG0650 WD40 repeat nucleolar 99.9 2E-20 4.3E-25 166.1 19.7 245 104-372 391-679 (733)
158 KOG1009 Chromatin assembly com 99.9 9.8E-20 2.1E-24 154.7 22.9 285 88-377 37-376 (434)
159 KOG1408 WD40 repeat protein [F 99.9 5.3E-20 1.2E-24 166.6 21.8 249 117-380 328-678 (1080)
160 KOG1063 RNA polymerase II elon 99.9 5.8E-19 1.2E-23 159.4 27.8 271 103-376 181-605 (764)
161 PRK11028 6-phosphogluconolacto 99.9 5.8E-18 1.2E-22 152.7 34.2 263 88-373 13-304 (330)
162 KOG0642 Cell-cycle nuclear pro 99.9 1.3E-20 2.8E-25 166.3 15.4 261 105-378 286-566 (577)
163 KOG2110 Uncharacterized conser 99.8 4.8E-18 1E-22 143.0 28.0 242 114-376 6-251 (391)
164 KOG1538 Uncharacterized conser 99.8 4.1E-19 9E-24 159.8 21.5 259 90-374 34-294 (1081)
165 KOG0303 Actin-binding protein 99.8 1.4E-18 3E-23 147.3 22.6 218 105-334 73-298 (472)
166 KOG1007 WD repeat protein TSSC 99.8 7.3E-19 1.6E-23 143.1 20.0 258 59-330 66-361 (370)
167 KOG0649 WD40 repeat protein [G 99.8 1.6E-17 3.6E-22 132.2 24.9 248 104-370 53-313 (325)
168 KOG0290 Conserved WD40 repeat- 99.8 1.6E-18 3.4E-23 141.3 18.9 246 114-377 45-322 (364)
169 KOG2445 Nuclear pore complex c 99.8 4.4E-18 9.6E-23 139.8 21.1 202 166-374 12-257 (361)
170 KOG0322 G-protein beta subunit 99.8 1.6E-18 3.5E-23 139.4 17.2 250 102-372 3-322 (323)
171 KOG0303 Actin-binding protein 99.8 1.8E-17 3.8E-22 140.6 22.3 201 166-376 80-297 (472)
172 KOG1188 WD40 repeat protein [G 99.8 1.7E-18 3.6E-23 144.2 15.7 231 126-375 41-348 (376)
173 KOG1034 Transcriptional repres 99.8 4.8E-18 1E-22 140.8 18.1 252 109-377 34-341 (385)
174 COG2319 FOG: WD40 repeat [Gene 99.8 1.9E-16 4E-21 147.7 31.4 250 108-378 60-319 (466)
175 KOG2919 Guanine nucleotide-bin 99.8 4.6E-17 1E-21 134.8 22.9 233 113-364 104-361 (406)
176 PRK01742 tolB translocation pr 99.8 2.1E-17 4.6E-22 153.6 23.7 234 89-354 184-426 (429)
177 KOG0650 WD40 repeat nucleolar 99.8 1.7E-17 3.7E-22 147.7 21.2 199 163-370 517-732 (733)
178 KOG4227 WD40 repeat protein [G 99.8 9.5E-18 2.1E-22 142.2 18.5 261 105-381 48-330 (609)
179 KOG0321 WD40 repeat-containing 99.8 2.4E-17 5.1E-22 147.9 20.3 246 119-377 55-351 (720)
180 KOG0644 Uncharacterized conser 99.8 2.3E-19 5.1E-24 165.1 7.5 263 104-385 181-480 (1113)
181 KOG2111 Uncharacterized conser 99.8 4E-16 8.7E-21 129.1 25.2 240 116-376 8-259 (346)
182 KOG1009 Chromatin assembly com 99.8 1.2E-16 2.5E-21 136.2 21.5 254 112-379 12-335 (434)
183 PRK03629 tolB translocation pr 99.8 6.5E-16 1.4E-20 143.4 28.5 238 89-353 179-427 (429)
184 KOG1272 WD40-repeat-containing 99.8 2.9E-18 6.3E-23 148.2 10.4 247 109-383 125-373 (545)
185 KOG1587 Cytoplasmic dynein int 99.8 6.9E-16 1.5E-20 143.0 26.0 280 90-387 223-530 (555)
186 COG2319 FOG: WD40 repeat [Gene 99.8 2.4E-14 5.2E-19 133.5 37.0 252 105-376 100-362 (466)
187 KOG1963 WD40 repeat protein [G 99.8 8.9E-16 1.9E-20 142.9 26.4 250 109-375 201-540 (792)
188 PF02239 Cytochrom_D1: Cytochr 99.8 2.7E-15 5.8E-20 135.2 29.1 269 90-382 17-356 (369)
189 KOG1188 WD40 repeat protein [G 99.8 5.6E-17 1.2E-21 135.2 16.5 195 180-382 41-251 (376)
190 PRK11028 6-phosphogluconolacto 99.8 1.9E-15 4.1E-20 136.3 27.6 225 132-375 10-260 (330)
191 KOG0649 WD40 repeat protein [G 99.7 9.4E-16 2E-20 122.3 21.8 239 114-373 11-274 (325)
192 PRK01742 tolB translocation pr 99.7 4.1E-16 8.9E-21 145.1 22.8 192 166-373 202-401 (429)
193 KOG1523 Actin-related protein 99.7 3.2E-16 6.9E-21 129.7 19.2 229 108-354 5-260 (361)
194 KOG1538 Uncharacterized conser 99.7 1.5E-16 3.3E-21 143.5 18.4 230 115-372 14-251 (1081)
195 PF08662 eIF2A: Eukaryotic tra 99.7 8.3E-16 1.8E-20 126.1 19.4 159 213-382 9-187 (194)
196 KOG1524 WD40 repeat-containing 99.7 3.1E-16 6.6E-21 138.2 16.4 182 166-371 103-284 (737)
197 KOG1445 Tumor-specific antigen 99.7 4.1E-16 8.8E-21 140.0 17.4 233 88-334 604-848 (1012)
198 KOG2394 WD40 protein DMR-N9 [G 99.7 1.8E-15 3.9E-20 133.4 20.8 220 115-352 125-383 (636)
199 KOG2139 WD40 repeat protein [G 99.7 2.5E-14 5.4E-19 120.5 26.5 256 112-373 139-431 (445)
200 PRK05137 tolB translocation pr 99.7 1.4E-14 3.1E-19 135.2 28.2 238 89-354 182-433 (435)
201 PRK02889 tolB translocation pr 99.7 5.4E-15 1.2E-19 137.4 25.1 238 90-354 177-425 (427)
202 KOG0771 Prolactin regulatory e 99.7 3.8E-16 8.3E-21 133.9 15.2 194 117-330 148-354 (398)
203 KOG1272 WD40-repeat-containing 99.7 1.8E-17 3.9E-22 143.4 7.1 200 170-381 132-331 (545)
204 PRK04922 tolB translocation pr 99.7 7.2E-15 1.6E-19 137.0 25.1 237 90-353 185-432 (433)
205 KOG1524 WD40 repeat-containing 99.7 4.3E-16 9.3E-21 137.3 15.5 239 111-368 12-250 (737)
206 PF10282 Lactonase: Lactonase, 99.7 1.4E-12 3E-17 117.9 38.9 270 85-373 11-322 (345)
207 KOG1523 Actin-related protein 99.7 1.1E-15 2.3E-20 126.6 16.4 202 167-376 10-239 (361)
208 KOG1517 Guanine nucleotide bin 99.7 5.6E-15 1.2E-19 140.0 22.1 245 114-374 1065-1334(1387)
209 PRK05137 tolB translocation pr 99.7 4.3E-14 9.3E-19 132.0 28.0 201 166-376 200-415 (435)
210 KOG4497 Uncharacterized conser 99.7 2.6E-16 5.5E-21 130.8 11.3 229 118-380 13-247 (447)
211 KOG3881 Uncharacterized conser 99.7 1.5E-14 3.3E-19 123.0 21.8 255 111-380 53-327 (412)
212 PRK03629 tolB translocation pr 99.7 4.5E-14 9.8E-19 131.1 26.9 196 166-373 197-406 (429)
213 PRK02889 tolB translocation pr 99.7 1.8E-14 4E-19 133.9 23.8 209 133-365 173-392 (427)
214 PRK04922 tolB translocation pr 99.7 2.1E-14 4.7E-19 133.9 24.3 197 166-374 202-412 (433)
215 KOG2321 WD40 repeat protein [G 99.7 1.6E-14 3.6E-19 128.5 21.0 266 111-388 49-355 (703)
216 KOG1587 Cytoplasmic dynein int 99.7 3.2E-14 7E-19 132.0 23.9 234 90-331 266-517 (555)
217 KOG1310 WD40 repeat protein [G 99.7 2.1E-15 4.5E-20 133.4 14.5 218 105-338 42-311 (758)
218 KOG1517 Guanine nucleotide bin 99.7 4.1E-14 8.8E-19 134.3 23.9 255 113-377 1109-1385(1387)
219 KOG0642 Cell-cycle nuclear pro 99.6 5.2E-15 1.1E-19 131.3 15.5 228 100-338 331-569 (577)
220 PRK01029 tolB translocation pr 99.6 4.2E-13 9E-18 124.2 28.6 242 90-355 166-426 (428)
221 PRK00178 tolB translocation pr 99.6 5.3E-13 1.1E-17 124.9 28.5 238 90-354 180-428 (430)
222 KOG1963 WD40 repeat protein [G 99.6 2.3E-13 4.9E-18 127.1 25.3 157 116-289 163-323 (792)
223 KOG2394 WD40 protein DMR-N9 [G 99.6 3.4E-14 7.3E-19 125.5 17.8 176 113-289 219-453 (636)
224 KOG2139 WD40 repeat protein [G 99.6 6.7E-14 1.4E-18 118.0 18.7 197 168-374 99-310 (445)
225 PF08662 eIF2A: Eukaryotic tra 99.6 1.5E-13 3.2E-18 112.8 20.5 158 171-338 9-186 (194)
226 KOG1310 WD40 repeat protein [G 99.6 6.8E-15 1.5E-19 130.2 13.3 206 166-377 49-307 (758)
227 PRK04792 tolB translocation pr 99.6 8E-13 1.7E-17 123.3 27.7 225 107-353 211-446 (448)
228 KOG1240 Protein kinase contain 99.6 2.6E-13 5.6E-18 130.8 24.5 263 103-378 1038-1339(1431)
229 PF10282 Lactonase: Lactonase, 99.6 2.4E-11 5.2E-16 109.8 36.1 274 66-351 45-345 (345)
230 KOG0644 Uncharacterized conser 99.6 9.3E-16 2E-20 141.7 7.2 205 163-379 185-432 (1113)
231 PF02239 Cytochrom_D1: Cytochr 99.6 2E-12 4.3E-17 116.7 28.6 238 127-382 7-311 (369)
232 KOG3881 Uncharacterized conser 99.6 8.8E-14 1.9E-18 118.4 18.1 227 108-354 100-342 (412)
233 KOG2110 Uncharacterized conser 99.6 2.8E-12 6.2E-17 108.6 26.9 205 161-375 81-332 (391)
234 KOG4227 WD40 repeat protein [G 99.6 1.4E-13 3.1E-18 117.1 18.8 248 103-372 94-386 (609)
235 PRK01029 tolB translocation pr 99.6 1.3E-12 2.8E-17 121.0 26.4 202 168-377 185-407 (428)
236 KOG1240 Protein kinase contain 99.6 1.4E-13 3E-18 132.7 19.9 216 158-377 1038-1277(1431)
237 KOG4497 Uncharacterized conser 99.6 2.4E-12 5.3E-17 107.4 24.1 248 105-375 83-433 (447)
238 COG2706 3-carboxymuconate cycl 99.6 7.7E-11 1.7E-15 100.3 33.4 271 87-374 16-322 (346)
239 KOG0322 G-protein beta subunit 99.6 1.1E-13 2.4E-18 111.9 14.2 156 168-329 151-322 (323)
240 COG2706 3-carboxymuconate cycl 99.6 5.3E-11 1.2E-15 101.2 30.8 273 67-352 49-345 (346)
241 TIGR02800 propeller_TolB tol-p 99.6 2.5E-12 5.4E-17 120.1 25.5 190 166-365 188-386 (417)
242 PRK00178 tolB translocation pr 99.6 3.6E-12 7.7E-17 119.3 26.3 199 166-374 197-407 (430)
243 KOG1334 WD40 repeat protein [G 99.6 4.6E-14 9.9E-19 123.3 12.3 265 105-376 134-469 (559)
244 KOG2111 Uncharacterized conser 99.6 1.7E-11 3.7E-16 102.0 26.3 196 68-289 57-257 (346)
245 PRK04792 tolB translocation pr 99.5 7.6E-12 1.7E-16 116.8 26.4 198 166-373 216-425 (448)
246 TIGR02800 propeller_TolB tol-p 99.5 8.2E-12 1.8E-16 116.7 25.9 236 89-351 170-416 (417)
247 KOG1354 Serine/threonine prote 99.5 6.3E-13 1.4E-17 111.5 16.1 258 112-377 24-363 (433)
248 KOG2321 WD40 repeat protein [G 99.5 5.6E-13 1.2E-17 118.9 16.4 216 158-383 42-312 (703)
249 KOG2315 Predicted translation 99.5 7.6E-12 1.6E-16 111.6 22.6 117 251-378 269-394 (566)
250 KOG4547 WD40 repeat-containing 99.5 6.4E-12 1.4E-16 112.8 21.6 189 177-374 3-221 (541)
251 TIGR02658 TTQ_MADH_Hv methylam 99.5 2.8E-09 6E-14 94.4 34.7 270 90-381 28-338 (352)
252 KOG1354 Serine/threonine prote 99.4 2.9E-11 6.4E-16 101.6 19.4 212 113-332 84-361 (433)
253 KOG1409 Uncharacterized conser 99.4 2.3E-11 5E-16 102.3 18.8 253 103-376 14-273 (404)
254 PLN02919 haloacid dehalogenase 99.4 1.6E-09 3.5E-14 110.6 32.1 255 116-377 570-892 (1057)
255 PRK04043 tolB translocation pr 99.4 8.9E-10 1.9E-14 101.5 26.4 196 168-375 188-402 (419)
256 PRK04043 tolB translocation pr 99.4 1.2E-09 2.6E-14 100.7 27.2 196 115-332 189-402 (419)
257 KOG0280 Uncharacterized conser 99.4 3.7E-10 7.9E-15 93.2 20.5 268 91-377 48-337 (339)
258 KOG1064 RAVE (regulator of V-A 99.3 6.8E-12 1.5E-16 125.3 11.5 226 109-366 2204-2439(2439)
259 KOG3914 WD repeat protein WDR4 99.3 3.2E-11 7E-16 103.5 13.8 173 211-390 64-240 (390)
260 KOG2314 Translation initiation 99.3 4.9E-10 1.1E-14 100.1 21.5 236 117-374 214-574 (698)
261 KOG0974 WD-repeat protein WDR6 99.3 9.1E-11 2E-15 112.0 18.0 195 114-331 88-289 (967)
262 PF15492 Nbas_N: Neuroblastoma 99.3 6.8E-09 1.5E-13 86.0 26.4 238 119-383 3-269 (282)
263 COG4946 Uncharacterized protei 99.3 8.2E-09 1.8E-13 90.8 27.5 174 124-317 331-505 (668)
264 KOG1064 RAVE (regulator of V-A 99.3 2.1E-11 4.6E-16 121.9 12.2 198 168-383 2209-2408(2439)
265 COG5354 Uncharacterized protei 99.3 2.7E-08 5.9E-13 88.3 29.2 260 90-377 109-399 (561)
266 KOG0974 WD-repeat protein WDR6 99.3 1.4E-10 3.1E-15 110.7 16.1 196 170-376 90-291 (967)
267 COG4946 Uncharacterized protei 99.3 3.5E-09 7.6E-14 93.1 22.8 226 121-362 274-507 (668)
268 KOG0280 Uncharacterized conser 99.3 4.2E-09 9.2E-14 87.1 21.6 201 167-376 69-287 (339)
269 COG5354 Uncharacterized protei 99.3 1.5E-09 3.3E-14 96.1 20.1 246 112-375 31-308 (561)
270 PF04762 IKI3: IKI3 family; I 99.3 2.3E-08 4.9E-13 100.4 31.2 201 168-377 210-460 (928)
271 TIGR02658 TTQ_MADH_Hv methylam 99.2 2E-08 4.4E-13 88.9 26.0 223 136-382 27-296 (352)
272 KOG2041 WD40 repeat protein [G 99.2 3.5E-09 7.7E-14 97.5 21.4 279 68-376 25-340 (1189)
273 KOG2315 Predicted translation 99.2 7.8E-09 1.7E-13 92.7 23.1 221 110-353 162-410 (566)
274 KOG1334 WD40 repeat protein [G 99.2 2.9E-10 6.4E-15 99.9 13.8 207 166-377 141-428 (559)
275 KOG4547 WD40 repeat-containing 99.2 1.9E-08 4.1E-13 90.9 22.6 144 179-331 70-221 (541)
276 PF07433 DUF1513: Protein of u 99.2 7.7E-08 1.7E-12 82.3 25.2 233 115-367 6-279 (305)
277 PLN02919 haloacid dehalogenase 99.1 1.3E-07 2.9E-12 96.8 31.3 211 114-334 624-892 (1057)
278 KOG2041 WD40 repeat protein [G 99.1 2.5E-09 5.5E-14 98.5 16.3 239 115-364 16-279 (1189)
279 KOG0309 Conserved WD40 repeat- 99.1 2.7E-10 5.8E-15 105.0 10.0 242 113-374 24-340 (1081)
280 PF08450 SGL: SMP-30/Gluconola 99.1 7E-07 1.5E-11 76.9 30.6 219 117-361 3-243 (246)
281 KOG4190 Uncharacterized conser 99.1 2.1E-10 4.6E-15 102.4 8.2 205 163-375 730-950 (1034)
282 PF04762 IKI3: IKI3 family; I 99.1 4.9E-07 1.1E-11 91.0 32.5 243 111-372 73-378 (928)
283 KOG3914 WD repeat protein WDR4 99.1 5.2E-09 1.1E-13 90.2 15.5 166 116-299 65-234 (390)
284 KOG1409 Uncharacterized conser 99.1 1.3E-08 2.9E-13 86.0 17.0 248 104-374 105-395 (404)
285 TIGR03300 assembly_YfgL outer 99.1 4.5E-07 9.8E-12 83.5 28.4 228 124-382 104-347 (377)
286 KOG1912 WD40 repeat protein [G 99.0 5.6E-08 1.2E-12 90.6 20.4 265 90-376 36-367 (1062)
287 KOG4532 WD40-like repeat conta 99.0 3.3E-07 7.2E-12 75.2 21.6 186 127-330 131-331 (344)
288 PF07433 DUF1513: Protein of u 99.0 4.1E-07 8.9E-12 77.9 23.2 208 169-383 6-257 (305)
289 COG5170 CDC55 Serine/threonine 99.0 1.1E-08 2.3E-13 85.4 12.9 253 113-373 26-367 (460)
290 KOG1912 WD40 repeat protein [G 99.0 1.7E-07 3.7E-12 87.5 21.5 237 116-374 18-305 (1062)
291 KOG4190 Uncharacterized conser 99.0 2.9E-09 6.2E-14 95.4 9.5 248 104-370 726-985 (1034)
292 PF08450 SGL: SMP-30/Gluconola 98.9 1.6E-06 3.5E-11 74.7 25.6 199 172-382 4-221 (246)
293 PF15492 Nbas_N: Neuroblastoma 98.9 2.2E-06 4.9E-11 71.3 24.7 203 115-339 45-268 (282)
294 KOG4714 Nucleoporin [Nuclear s 98.9 1.4E-08 3E-13 82.6 11.0 149 220-374 100-255 (319)
295 COG5170 CDC55 Serine/threonine 98.9 5.1E-08 1.1E-12 81.5 14.3 210 166-383 25-320 (460)
296 KOG2314 Translation initiation 98.9 1.1E-07 2.5E-12 85.4 16.0 179 171-360 214-410 (698)
297 TIGR03300 assembly_YfgL outer 98.9 4.2E-06 9.1E-11 77.1 27.2 173 180-370 191-376 (377)
298 KOG0882 Cyclophilin-related pe 98.9 5.5E-08 1.2E-12 85.2 13.3 250 111-380 7-312 (558)
299 PF13360 PQQ_2: PQQ-like domai 98.9 2.4E-06 5.1E-11 73.3 23.7 186 178-377 35-234 (238)
300 KOG3617 WD40 and TPR repeat-co 98.9 6.2E-08 1.3E-12 91.2 14.3 112 113-239 15-131 (1416)
301 KOG0309 Conserved WD40 repeat- 98.8 1.4E-08 3E-13 94.1 9.3 204 166-376 23-235 (1081)
302 KOG4714 Nucleoporin [Nuclear s 98.8 1.7E-07 3.8E-12 76.4 14.0 170 103-289 79-255 (319)
303 KOG4532 WD40-like repeat conta 98.8 8.3E-07 1.8E-11 72.9 17.7 190 179-377 84-286 (344)
304 KOG0882 Cyclophilin-related pe 98.8 7.9E-08 1.7E-12 84.2 11.4 212 166-381 8-239 (558)
305 PF00400 WD40: WD domain, G-be 98.8 3.4E-08 7.3E-13 58.0 6.3 39 332-371 1-39 (39)
306 PF05694 SBP56: 56kDa selenium 98.7 8.6E-05 1.9E-09 66.5 28.8 291 66-361 16-391 (461)
307 KOG1832 HIV-1 Vpr-binding prot 98.7 7E-09 1.5E-13 97.8 3.6 199 162-383 1095-1301(1516)
308 KOG2695 WD40 repeat protein [G 98.7 4.8E-08 1.1E-12 82.7 8.2 131 163-299 248-387 (425)
309 KOG1645 RING-finger-containing 98.7 9.8E-07 2.1E-11 76.5 16.1 245 106-374 186-462 (463)
310 KOG2066 Vacuolar assembly/sort 98.7 1.1E-06 2.3E-11 82.8 17.6 188 168-375 40-235 (846)
311 PF00400 WD40: WD domain, G-be 98.7 7.7E-08 1.7E-12 56.4 6.4 39 290-328 1-39 (39)
312 PF00930 DPPIV_N: Dipeptidyl p 98.7 1.2E-05 2.5E-10 73.3 23.6 258 90-361 24-345 (353)
313 PRK02888 nitrous-oxide reducta 98.7 6E-06 1.3E-10 77.5 21.7 234 124-374 140-405 (635)
314 KOG2695 WD40 repeat protein [G 98.7 5.6E-08 1.2E-12 82.4 7.7 157 215-383 217-386 (425)
315 KOG1275 PAB-dependent poly(A) 98.7 6.6E-07 1.4E-11 85.2 15.3 148 170-328 180-340 (1118)
316 KOG1920 IkappaB kinase complex 98.7 1E-05 2.2E-10 79.8 23.4 205 166-375 67-324 (1265)
317 KOG1920 IkappaB kinase complex 98.7 1.7E-05 3.7E-10 78.3 24.2 203 112-333 67-325 (1265)
318 COG0823 TolB Periplasmic compo 98.6 8.2E-06 1.8E-10 75.1 21.0 193 107-320 186-389 (425)
319 PF06977 SdiA-regulated: SdiA- 98.6 6.2E-05 1.4E-09 63.8 24.6 202 108-327 16-247 (248)
320 PF06433 Me-amine-dh_H: Methyl 98.6 0.00024 5.1E-09 62.1 26.7 272 90-382 18-329 (342)
321 PF11768 DUF3312: Protein of u 98.6 7.1E-06 1.5E-10 75.2 18.0 80 162-243 254-333 (545)
322 PRK11138 outer membrane biogen 98.6 0.00023 5E-09 65.9 28.7 220 127-372 162-393 (394)
323 COG0823 TolB Periplasmic compo 98.6 1E-05 2.3E-10 74.4 19.1 179 189-376 173-361 (425)
324 KOG1832 HIV-1 Vpr-binding prot 98.6 4.3E-08 9.3E-13 92.7 3.6 219 104-359 1092-1317(1516)
325 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00034 7.4E-09 57.8 23.9 70 178-248 62-132 (354)
326 PF04053 Coatomer_WDAD: Coatom 98.5 7.3E-05 1.6E-09 69.2 22.8 231 104-375 23-264 (443)
327 PRK11138 outer membrane biogen 98.5 0.00018 3.9E-09 66.7 25.5 229 125-382 120-362 (394)
328 KOG2066 Vacuolar assembly/sort 98.5 7.7E-06 1.7E-10 77.2 15.9 141 122-288 80-233 (846)
329 COG3391 Uncharacterized conser 98.5 0.00049 1.1E-08 63.2 27.7 244 115-380 32-290 (381)
330 PRK02888 nitrous-oxide reducta 98.5 3E-05 6.4E-10 73.0 19.5 152 166-331 233-405 (635)
331 KOG2114 Vacuolar assembly/sort 98.5 3.7E-05 7.9E-10 73.3 19.9 196 173-376 29-246 (933)
332 PF11768 DUF3312: Protein of u 98.4 0.0011 2.4E-08 61.3 28.4 73 299-374 258-330 (545)
333 PF13360 PQQ_2: PQQ-like domai 98.4 9.9E-05 2.1E-09 63.2 20.9 177 188-377 2-195 (238)
334 KOG2114 Vacuolar assembly/sort 98.4 8E-05 1.7E-09 71.1 21.3 204 120-345 30-258 (933)
335 KOG1275 PAB-dependent poly(A) 98.3 1.8E-05 4E-10 75.8 14.6 183 178-371 146-340 (1118)
336 PF08596 Lgl_C: Lethal giant l 98.3 0.00098 2.1E-08 60.9 24.9 253 115-372 3-334 (395)
337 PF06433 Me-amine-dh_H: Methyl 98.3 0.0012 2.5E-08 57.9 23.9 206 116-339 97-329 (342)
338 COG3391 Uncharacterized conser 98.3 0.00091 2E-08 61.4 24.8 208 114-339 74-292 (381)
339 PF02897 Peptidase_S9_N: Proly 98.3 0.00056 1.2E-08 63.9 23.2 196 170-373 126-357 (414)
340 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.00039 8.4E-09 63.3 21.2 225 122-374 1-267 (353)
341 COG3386 Gluconolactonase [Carb 98.2 0.001 2.2E-08 58.6 22.7 222 118-362 29-274 (307)
342 PF06977 SdiA-regulated: SdiA- 98.2 0.0023 4.9E-08 54.4 24.0 196 168-370 22-247 (248)
343 PRK13616 lipoprotein LpqB; Pro 98.2 0.0005 1.1E-08 66.2 22.6 190 111-326 347-564 (591)
344 cd00216 PQQ_DH Dehydrogenases 98.2 0.0031 6.8E-08 60.1 27.9 239 126-382 111-433 (488)
345 PF02897 Peptidase_S9_N: Proly 98.2 0.0041 8.9E-08 58.1 28.3 244 117-377 127-408 (414)
346 PF14583 Pectate_lyase22: Olig 98.2 0.0036 7.9E-08 55.9 33.6 279 68-375 46-383 (386)
347 PF04841 Vps16_N: Vps16, N-ter 98.2 0.0024 5.2E-08 59.1 25.3 174 168-355 81-271 (410)
348 PF08553 VID27: VID27 cytoplas 98.2 0.00057 1.2E-08 67.0 21.7 133 134-287 502-646 (794)
349 KOG1645 RING-finger-containing 98.1 2.5E-05 5.4E-10 68.1 10.5 94 191-291 175-269 (463)
350 KOG1008 Uncharacterized conser 98.1 6.5E-07 1.4E-11 82.1 0.9 201 166-374 55-276 (783)
351 PF08596 Lgl_C: Lethal giant l 98.1 0.0026 5.6E-08 58.3 23.2 213 169-383 3-300 (395)
352 KOG3621 WD40 repeat-containing 98.1 0.0017 3.8E-08 61.0 21.2 275 67-377 43-357 (726)
353 KOG4640 Anaphase-promoting com 98.0 2.8E-05 6.1E-10 71.6 9.4 95 167-262 20-115 (665)
354 cd00216 PQQ_DH Dehydrogenases 98.0 0.011 2.3E-07 56.5 26.7 194 135-339 174-433 (488)
355 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.017 3.6E-07 55.5 27.5 241 127-382 122-499 (527)
356 PF04053 Coatomer_WDAD: Coatom 98.0 0.00067 1.5E-08 62.9 17.6 141 211-374 34-174 (443)
357 PF14583 Pectate_lyase22: Olig 98.0 0.0049 1.1E-07 55.1 21.4 201 174-376 42-275 (386)
358 PF08553 VID27: VID27 cytoplas 98.0 0.0023 5E-08 62.9 21.1 136 186-329 501-646 (794)
359 KOG3621 WD40 repeat-containing 97.9 0.00017 3.7E-09 67.6 12.7 195 167-373 33-244 (726)
360 PRK13616 lipoprotein LpqB; Pro 97.9 0.00093 2E-08 64.4 17.2 151 211-373 351-525 (591)
361 PF03178 CPSF_A: CPSF A subuni 97.8 0.0047 1E-07 55.5 20.2 175 189-374 2-203 (321)
362 KOG4640 Anaphase-promoting com 97.8 9.4E-05 2E-09 68.4 9.0 93 254-353 22-115 (665)
363 PF04841 Vps16_N: Vps16, N-ter 97.8 0.0088 1.9E-07 55.4 21.8 173 190-378 62-251 (410)
364 KOG1008 Uncharacterized conser 97.8 8.3E-06 1.8E-10 75.1 1.5 155 167-330 102-275 (783)
365 PF14655 RAB3GAP2_N: Rab3 GTPa 97.8 0.029 6.4E-07 51.4 27.1 81 301-382 308-407 (415)
366 KOG2395 Protein involved in va 97.8 0.0014 2.9E-08 59.8 14.9 145 123-288 343-500 (644)
367 COG3490 Uncharacterized protei 97.8 0.015 3.2E-07 49.2 19.8 238 115-372 69-347 (366)
368 KOG3617 WD40 and TPR repeat-co 97.8 6.6E-05 1.4E-09 71.6 6.9 123 257-384 20-142 (1416)
369 COG3386 Gluconolactonase [Carb 97.8 0.025 5.5E-07 49.9 24.3 146 168-319 111-274 (307)
370 KOG4649 PQQ (pyrrolo-quinoline 97.7 0.014 2.9E-07 48.7 18.7 145 179-332 23-167 (354)
371 PF15390 DUF4613: Domain of un 97.7 0.045 9.7E-07 51.2 25.4 121 113-238 56-185 (671)
372 COG3204 Uncharacterized protei 97.7 0.022 4.8E-07 48.5 19.6 165 110-290 82-265 (316)
373 KOG2444 WD40 repeat protein [G 97.6 9E-05 2E-09 60.0 4.8 145 223-377 32-181 (238)
374 smart00320 WD40 WD40 repeats. 97.6 0.00023 5E-09 40.5 5.5 38 333-371 3-40 (40)
375 smart00320 WD40 WD40 repeats. 97.5 0.00041 8.8E-09 39.4 5.9 38 291-328 3-40 (40)
376 PRK10115 protease 2; Provision 97.5 0.09 1.9E-06 52.3 25.1 196 169-373 128-344 (686)
377 COG3490 Uncharacterized protei 97.5 0.052 1.1E-06 46.0 19.8 209 169-382 69-319 (366)
378 PF05096 Glu_cyclase_2: Glutam 97.4 0.052 1.1E-06 46.1 19.0 162 211-383 46-213 (264)
379 PRK10115 protease 2; Provision 97.4 0.17 3.7E-06 50.4 29.1 241 115-376 128-397 (686)
380 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.019 4.2E-07 41.5 13.7 99 116-234 2-109 (111)
381 PF03178 CPSF_A: CPSF A subuni 97.4 0.099 2.2E-06 47.0 25.3 179 179-370 42-262 (321)
382 PF00780 CNH: CNH domain; Int 97.4 0.087 1.9E-06 46.1 22.8 225 123-382 5-264 (275)
383 KOG2395 Protein involved in va 97.2 0.0063 1.4E-07 55.6 12.0 145 224-373 349-500 (644)
384 COG3204 Uncharacterized protei 97.2 0.053 1.2E-06 46.3 16.5 161 206-372 82-262 (316)
385 KOG2280 Vacuolar assembly/sort 97.2 0.028 6.1E-07 53.8 16.0 181 167-354 83-270 (829)
386 KOG1897 Damage-specific DNA bi 97.2 0.31 6.7E-06 48.5 25.0 175 190-374 751-943 (1096)
387 PF10647 Gmad1: Lipoprotein Lp 97.2 0.13 2.9E-06 44.3 19.3 149 168-322 24-187 (253)
388 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.057 1.2E-06 39.1 14.5 65 170-238 2-70 (111)
389 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.1 0.18 4E-06 48.5 21.6 194 179-379 69-339 (527)
390 KOG4499 Ca2+-binding protein R 97.0 0.13 2.7E-06 42.5 16.5 172 127-310 72-263 (310)
391 PF12894 Apc4_WD40: Anaphase-p 97.0 0.0029 6.4E-08 38.1 5.7 34 167-201 11-44 (47)
392 PF10647 Gmad1: Lipoprotein Lp 96.9 0.22 4.7E-06 42.9 20.0 137 115-265 25-178 (253)
393 TIGR03074 PQQ_membr_DH membran 96.9 0.54 1.2E-05 47.2 23.0 200 179-381 194-485 (764)
394 PF05096 Glu_cyclase_2: Glutam 96.9 0.24 5.2E-06 42.2 24.6 189 161-361 36-249 (264)
395 KOG2079 Vacuolar assembly/sort 96.8 0.0061 1.3E-07 60.4 9.0 73 164-238 127-202 (1206)
396 KOG2079 Vacuolar assembly/sort 96.8 0.0048 1E-07 61.1 8.0 98 273-373 102-203 (1206)
397 PHA02713 hypothetical protein; 96.8 0.18 4E-06 48.9 18.9 187 178-376 303-536 (557)
398 PF12894 Apc4_WD40: Anaphase-p 96.8 0.0055 1.2E-07 36.9 5.4 35 342-377 10-44 (47)
399 KOG3630 Nuclear pore complex, 96.7 0.045 9.7E-07 54.9 13.5 158 107-265 93-256 (1405)
400 KOG1897 Damage-specific DNA bi 96.7 0.82 1.8E-05 45.8 27.8 246 113-377 530-819 (1096)
401 TIGR03118 PEPCTERM_chp_1 conse 96.6 0.43 9.3E-06 41.3 20.8 209 169-381 24-287 (336)
402 KOG4499 Ca2+-binding protein R 96.5 0.38 8.3E-06 39.8 19.9 136 211-353 110-263 (310)
403 PF15390 DUF4613: Domain of un 96.5 0.13 2.8E-06 48.3 14.3 115 168-288 57-186 (671)
404 KOG1916 Nuclear protein, conta 96.4 0.0077 1.7E-07 58.6 6.6 214 109-331 128-375 (1283)
405 KOG2444 WD40 repeat protein [G 96.4 0.011 2.3E-07 48.4 6.2 140 184-331 35-178 (238)
406 PF05694 SBP56: 56kDa selenium 96.3 0.81 1.7E-05 41.9 22.0 194 178-376 86-345 (461)
407 PHA02713 hypothetical protein; 96.3 0.43 9.4E-06 46.4 18.0 150 178-336 351-539 (557)
408 PHA03098 kelch-like protein; P 96.3 0.3 6.5E-06 47.4 17.1 188 177-375 293-513 (534)
409 TIGR03074 PQQ_membr_DH membran 96.3 1.5 3.3E-05 44.1 23.2 156 179-338 260-485 (764)
410 PF14655 RAB3GAP2_N: Rab3 GTPa 96.2 0.15 3.3E-06 46.9 13.3 89 211-299 309-409 (415)
411 KOG3630 Nuclear pore complex, 96.1 0.072 1.6E-06 53.5 11.4 143 211-360 102-260 (1405)
412 KOG4441 Proteins containing BT 96.1 1.3 2.9E-05 43.1 20.0 191 172-375 327-548 (571)
413 PF07995 GSDH: Glucose / Sorbo 96.1 1 2.2E-05 40.6 26.4 68 301-368 253-330 (331)
414 KOG2377 Uncharacterized conser 96.1 0.31 6.7E-06 44.3 14.1 136 118-265 27-166 (657)
415 PF14870 PSII_BNR: Photosynthe 96.0 1 2.2E-05 39.8 28.2 153 207-370 142-301 (302)
416 TIGR02604 Piru_Ver_Nterm putat 95.7 1.2 2.5E-05 41.0 17.2 144 168-319 14-202 (367)
417 COG3823 Glutamine cyclotransfe 95.6 0.97 2.1E-05 36.8 14.8 173 178-361 55-247 (262)
418 PRK13684 Ycf48-like protein; P 95.6 1.4 2.9E-05 39.9 16.7 150 168-329 173-330 (334)
419 PF00780 CNH: CNH domain; Int 95.5 1.5 3.3E-05 38.3 27.5 205 116-339 38-264 (275)
420 COG5167 VID27 Protein involved 95.5 1 2.2E-05 41.8 15.1 144 122-288 476-632 (776)
421 PF14727 PHTB1_N: PTHB1 N-term 95.5 2.1 4.5E-05 39.7 34.5 288 66-377 34-364 (418)
422 PHA03098 kelch-like protein; P 95.2 1.6 3.4E-05 42.5 17.2 147 178-333 342-514 (534)
423 PF10168 Nup88: Nuclear pore c 95.2 0.42 9.1E-06 47.5 13.1 75 301-376 85-182 (717)
424 PHA02790 Kelch-like protein; P 95.2 2.4 5.2E-05 40.5 18.0 185 178-375 271-472 (480)
425 PF10395 Utp8: Utp8 family; I 95.2 3.3 7.2E-05 40.4 24.2 245 119-382 33-314 (670)
426 PF10168 Nup88: Nuclear pore c 95.2 3.2 7E-05 41.5 19.0 88 113-200 84-182 (717)
427 TIGR02604 Piru_Ver_Nterm putat 95.2 2.5 5.5E-05 38.8 22.5 141 114-265 14-196 (367)
428 PF08728 CRT10: CRT10; InterP 95.0 1.6 3.6E-05 42.9 15.9 163 125-287 49-245 (717)
429 KOG4441 Proteins containing BT 94.8 2 4.4E-05 41.8 16.3 189 176-375 282-501 (571)
430 PF10313 DUF2415: Uncharacteri 94.4 0.25 5.3E-06 28.9 5.5 31 301-331 1-34 (43)
431 PF10313 DUF2415: Uncharacteri 94.4 0.24 5.3E-06 28.9 5.5 31 168-198 1-34 (43)
432 COG4590 ABC-type uncharacteriz 94.3 2 4.3E-05 39.4 13.6 161 211-381 222-394 (733)
433 PF10214 Rrn6: RNA polymerase 94.1 7.6 0.00016 39.6 27.3 168 111-289 77-277 (765)
434 PF07995 GSDH: Glucose / Sorbo 93.7 2.9 6.2E-05 37.8 14.0 107 212-320 4-133 (331)
435 PF07569 Hira: TUP1-like enhan 93.6 0.6 1.3E-05 39.2 8.9 67 308-375 18-97 (219)
436 KOG2280 Vacuolar assembly/sort 93.5 3.5 7.7E-05 40.3 14.4 181 189-382 64-255 (829)
437 KOG4460 Nuclear pore complex, 93.5 1.2 2.6E-05 41.4 10.9 77 302-378 105-203 (741)
438 PF12234 Rav1p_C: RAVE protein 93.5 4.1 8.9E-05 39.8 15.0 120 105-238 21-155 (631)
439 PF07569 Hira: TUP1-like enhan 93.3 0.74 1.6E-05 38.6 8.8 66 175-241 18-97 (219)
440 PF14870 PSII_BNR: Photosynthe 93.2 5.6 0.00012 35.2 25.6 238 113-377 16-264 (302)
441 COG4257 Vgb Streptogramin lyas 93.0 5.3 0.00011 34.3 16.3 198 168-374 62-263 (353)
442 PF12234 Rav1p_C: RAVE protein 93.0 1.8 3.9E-05 42.1 12.0 84 301-384 30-115 (631)
443 KOG4460 Nuclear pore complex, 92.9 4.3 9.2E-05 38.0 13.4 80 169-248 105-207 (741)
444 TIGR03606 non_repeat_PQQ dehyd 92.7 8.8 0.00019 36.1 20.4 112 209-320 29-165 (454)
445 COG5167 VID27 Protein involved 92.7 1.7 3.8E-05 40.3 10.6 155 220-380 478-641 (776)
446 KOG1916 Nuclear protein, conta 92.6 0.072 1.6E-06 52.3 2.1 93 279-373 152-265 (1283)
447 COG1770 PtrB Protease II [Amin 92.5 11 0.00024 36.7 22.5 202 169-378 130-353 (682)
448 PF14727 PHTB1_N: PTHB1 N-term 92.2 9.8 0.00021 35.4 16.1 146 221-373 37-204 (418)
449 TIGR02276 beta_rpt_yvtn 40-res 91.7 1.3 2.8E-05 25.5 6.2 40 310-351 1-41 (42)
450 PF11635 Med16: Mediator compl 91.6 17 0.00038 36.9 24.3 68 301-368 260-345 (753)
451 PF12657 TFIIIC_delta: Transcr 91.4 2.1 4.5E-05 34.5 9.0 29 169-197 87-121 (173)
452 TIGR03118 PEPCTERM_chp_1 conse 91.4 9.3 0.0002 33.4 22.2 228 115-353 24-307 (336)
453 PHA02790 Kelch-like protein; P 91.1 15 0.00032 35.2 18.9 64 178-244 362-428 (480)
454 PRK13684 Ycf48-like protein; P 90.8 12 0.00026 33.8 28.3 150 210-371 173-329 (334)
455 PLN00033 photosystem II stabil 90.8 14 0.00029 34.3 18.5 145 170-327 241-396 (398)
456 PF03022 MRJP: Major royal jel 90.8 11 0.00024 33.2 15.1 139 232-375 35-217 (287)
457 PF07676 PD40: WD40-like Beta 90.7 1.3 2.7E-05 25.2 5.3 31 109-139 4-38 (39)
458 KOG2247 WD40 repeat-containing 90.6 0.029 6.3E-07 51.1 -2.5 145 213-367 38-182 (615)
459 PF12768 Rax2: Cortical protei 90.6 11 0.00024 33.0 13.2 117 189-308 16-144 (281)
460 PF07250 Glyoxal_oxid_N: Glyox 90.6 9.3 0.0002 32.6 12.4 142 191-339 48-206 (243)
461 PF07676 PD40: WD40-like Beta 90.5 1.3 2.7E-05 25.2 5.2 31 297-327 5-38 (39)
462 PLN00033 photosystem II stabil 90.5 15 0.00032 34.1 30.5 146 212-370 241-396 (398)
463 PF08728 CRT10: CRT10; InterP 90.3 16 0.00035 36.3 15.1 100 272-372 116-245 (717)
464 PF11715 Nup160: Nucleoporin N 89.9 0.9 1.9E-05 44.3 6.8 73 310-382 156-257 (547)
465 KOG2377 Uncharacterized conser 89.8 7.5 0.00016 35.9 11.6 104 208-319 65-172 (657)
466 PF13449 Phytase-like: Esteras 89.4 16 0.00034 32.9 16.2 109 115-225 86-230 (326)
467 PF12657 TFIIIC_delta: Transcr 89.2 3.9 8.4E-05 32.9 8.9 36 254-289 87-122 (173)
468 PF02333 Phytase: Phytase; In 89.2 18 0.00038 33.2 19.9 196 178-382 67-300 (381)
469 KOG2247 WD40 repeat-containing 89.2 0.26 5.5E-06 45.3 2.1 205 113-335 74-285 (615)
470 PRK14131 N-acetylneuraminic ac 88.7 20 0.00043 33.1 19.8 53 178-230 84-149 (376)
471 PF14781 BBS2_N: Ciliary BBSom 88.4 9.3 0.0002 28.9 11.9 116 119-242 4-128 (136)
472 PF10214 Rrn6: RNA polymerase 88.2 33 0.00071 35.1 23.7 139 100-240 129-277 (765)
473 COG1520 FOG: WD40-like repeat 88.1 21 0.00046 32.8 20.1 155 178-339 111-277 (370)
474 COG1520 FOG: WD40-like repeat 88.1 21 0.00046 32.7 19.4 152 178-338 68-225 (370)
475 COG5276 Uncharacterized conser 88.0 17 0.00037 31.6 17.4 155 208-376 85-244 (370)
476 TIGR03606 non_repeat_PQQ dehyd 87.7 25 0.00055 33.1 19.1 54 168-221 30-90 (454)
477 KOG0783 Uncharacterized conser 87.5 13 0.00028 37.2 12.2 63 68-144 194-256 (1267)
478 COG3823 Glutamine cyclotransfe 87.5 9.8 0.00021 31.2 9.7 149 220-378 55-209 (262)
479 PF03022 MRJP: Major royal jel 87.4 20 0.00043 31.6 20.2 171 190-362 35-254 (287)
480 COG4590 ABC-type uncharacteriz 87.0 3.3 7.1E-05 38.0 7.6 169 106-290 213-388 (733)
481 KOG1983 Tomosyn and related SN 86.9 17 0.00037 38.2 13.7 31 168-198 36-66 (993)
482 KOG1900 Nuclear pore complex, 86.4 19 0.00041 38.0 13.2 141 227-374 95-273 (1311)
483 PF11715 Nup160: Nucleoporin N 86.1 4 8.8E-05 39.8 8.6 71 177-247 156-256 (547)
484 PF10395 Utp8: Utp8 family; I 86.0 37 0.00081 33.5 20.2 164 166-339 128-314 (670)
485 PF08801 Nucleoporin_N: Nup133 85.8 31 0.00067 32.4 14.8 30 345-374 191-220 (422)
486 TIGR03548 mutarot_permut cycli 85.8 26 0.00056 31.4 17.1 65 178-243 72-151 (323)
487 COG1506 DAP2 Dipeptidyl aminop 85.0 44 0.00094 33.3 17.5 167 165-362 57-234 (620)
488 PF13449 Phytase-like: Esteras 84.7 30 0.00064 31.2 19.5 156 211-373 21-249 (326)
489 COG5276 Uncharacterized conser 84.5 27 0.00058 30.5 19.5 196 166-375 85-287 (370)
490 TIGR02276 beta_rpt_yvtn 40-res 83.8 6.1 0.00013 22.6 5.8 35 273-308 7-41 (42)
491 TIGR03547 muta_rot_YjhT mutatr 83.8 34 0.00073 31.0 20.4 53 178-230 63-128 (346)
492 KOG3616 Selective LIM binding 82.4 33 0.00072 34.0 12.3 68 168-238 15-82 (1636)
493 KOG3522 Predicted guanine nucl 82.2 12 0.00026 37.3 9.5 72 166-241 625-699 (925)
494 PF03088 Str_synth: Strictosid 80.9 15 0.00032 25.7 7.3 56 304-361 1-74 (89)
495 PRK13613 lipoprotein LpqB; Pro 79.7 66 0.0014 31.8 20.4 192 169-367 364-576 (599)
496 PF14781 BBS2_N: Ciliary BBSom 79.6 25 0.00054 26.7 14.2 115 173-293 4-130 (136)
497 KOG1898 Splicing factor 3b, su 79.1 86 0.0019 32.7 16.8 173 190-373 854-1048(1205)
498 PF05935 Arylsulfotrans: Aryls 79.0 62 0.0013 31.0 19.2 145 187-339 126-310 (477)
499 TIGR02171 Fb_sc_TIGR02171 Fibr 78.3 16 0.00034 37.2 9.1 78 188-266 328-412 (912)
500 KOG2063 Vacuolar assembly/sort 77.6 91 0.002 32.2 14.4 69 174-243 21-100 (877)
No 1
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.1e-44 Score=303.39 Aligned_cols=269 Identities=20% Similarity=0.292 Sum_probs=240.5
Q ss_pred CCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccC--CCeEEEEe-cCCeEEEEEec
Q 015490 67 RRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPH--GDGIICAL-QNSCRLFEWDE 143 (406)
Q Consensus 67 ~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--~~~l~~~~-~~~~~i~~~~~ 143 (406)
.++..+++++-+|. +..|+... .+.++++.+|...|.++.|+|. +..+++++ |+++++|.++.
T Consensus 185 ~ds~~laT~swsG~----------~kvW~~~~----~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 185 RDSKHLATGSWSGL----------VKVWSVPQ----CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred cCCCeEEEeecCCc----------eeEeecCC----cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 36667777655442 33444443 3578899999999999999997 45788887 99999998873
Q ss_pred ccccceeecceeccceeeeccccc-CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCC
Q 015490 144 VENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGK 222 (406)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~ 222 (406)
..+++.+.+| ..|..++|+|+|++|++++.|.+-++||++++..+....+|...|.+++|++||.
T Consensus 251 --------------e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS 316 (459)
T KOG0272|consen 251 --------------ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS 316 (459)
T ss_pred --------------CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCc
Confidence 3456666666 7899999999999999999999999999999999988889999999999999999
Q ss_pred EEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCC
Q 015490 223 FLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREP 302 (406)
Q Consensus 223 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 302 (406)
.+++|+.|..-+|||+++|+++..+.+| ...|..++|+|+|- .+++++.|++++|||++..+.+.++..|..-
T Consensus 317 L~~tGGlD~~~RvWDlRtgr~im~L~gH-~k~I~~V~fsPNGy------~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl 389 (459)
T KOG0272|consen 317 LAATGGLDSLGRVWDLRTGRCIMFLAGH-IKEILSVAFSPNGY------HLATGSSDNTCKVWDLRMRSELYTIPAHSNL 389 (459)
T ss_pred eeeccCccchhheeecccCcEEEEeccc-ccceeeEeECCCce------EEeecCCCCcEEEeeecccccceecccccch
Confidence 9999999999999999999999999884 55688999999995 5899999999999999999999999999999
Q ss_pred eEEEEEcC-CCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEE
Q 015490 303 VSSFNVSA-DGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTV 371 (406)
Q Consensus 303 i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~ 371 (406)
|+.++|+| .|.+|++++.|++++||...++.++..+. +|.+.|.++..++|+.+++|++.|.++++|.
T Consensus 390 VS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLa-GHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 390 VSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLA-GHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hhheEecccCCeEEEEcccCcceeeecCCCcccchhhc-CCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999 78899999999999999999999999996 9999999999999999999999999999995
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-43 Score=294.35 Aligned_cols=257 Identities=19% Similarity=0.263 Sum_probs=220.8
Q ss_pred EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-
Q 015490 90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV- 167 (406)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 167 (406)
.+..||... ..|..+.++|...|.|++|+|||+.|++|+ ++.+++|+- .+++ ...+.+.+|
T Consensus 138 TvR~WD~~T----eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp--ktg~-----------~~g~~l~gH~ 200 (480)
T KOG0271|consen 138 TVRLWDLDT----ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP--KTGQ-----------QIGRALRGHK 200 (480)
T ss_pred eEEeeccCC----CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC--CCCC-----------cccccccCcc
Confidence 444555544 348999999999999999999999999998 998888653 3332 233345555
Q ss_pred CcEEEEEECC-----CCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCe
Q 015490 168 GQQLALTFDS-----EGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSA 242 (406)
Q Consensus 168 ~~v~~~~~s~-----~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~ 242 (406)
..|++++|.| ..++||+++.||+|+|||+..+.++..+.+|..+|+|+.|--+| +|++++.|++|++|+...|.
T Consensus 201 K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~ 279 (480)
T KOG0271|consen 201 KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGK 279 (480)
T ss_pred cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchh
Confidence 7899999976 56899999999999999999999999999999999999997655 89999999999999986543
Q ss_pred eeeeccc-------------------------------------------------------------------------
Q 015490 243 VATPLAK------------------------------------------------------------------------- 249 (406)
Q Consensus 243 ~~~~~~~------------------------------------------------------------------------- 249 (406)
+.+.+.+
T Consensus 280 ~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkp 359 (480)
T KOG0271|consen 280 LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKP 359 (480)
T ss_pred HHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccc
Confidence 3322222
Q ss_pred -----CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcE
Q 015490 250 -----ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDI 324 (406)
Q Consensus 250 -----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i 324 (406)
.|...|..+.|+|+++ ++++++.|..|++||.++|+.+.++++|-..|+.++|+.|.++|++|+.|.++
T Consensus 360 i~rmtgHq~lVn~V~fSPd~r------~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTL 433 (480)
T KOG0271|consen 360 ITRMTGHQALVNHVSFSPDGR------YIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTL 433 (480)
T ss_pred hhhhhchhhheeeEEECCCcc------EEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceE
Confidence 1445677899999998 47888999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEE
Q 015490 325 SIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTV 371 (406)
Q Consensus 325 ~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~ 371 (406)
++||+++.+....+. +|...|.++.|+|||..+++|+.|..+++|.
T Consensus 434 Kvw~V~tkKl~~DLp-Gh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 434 KVWDVRTKKLKQDLP-GHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEEeeeeeecccCC-CCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999986 9999999999999999999999999999995
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-43 Score=294.26 Aligned_cols=254 Identities=20% Similarity=0.309 Sum_probs=215.4
Q ss_pred ceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccc-cCcEEEEEECCCCCEE
Q 015490 105 PVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN-VGQQLALTFDSEGTIF 182 (406)
Q Consensus 105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l 182 (406)
+-..+.||.++|.|++|+|+|..|++|+ |.++|+|+.+.++. ..+..+ ...|.|++|+|||+.|
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp--------------~~t~KgH~~WVlcvawsPDgk~i 172 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP--------------LFTCKGHKNWVLCVAWSPDGKKI 172 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc--------------ceeecCCccEEEEEEECCCcchh
Confidence 4456889999999999999999999997 99999998885432 233334 4789999999999999
Q ss_pred EEeeCCCeEEEEeCCCcceE-eeeeccCCceeEEEEcc-----CCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEE
Q 015490 183 AAGSENGNLRVFKWPSLEII-LNESEAHASVKDLSFSP-----DGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFA 256 (406)
Q Consensus 183 ~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~i~~~~~s~-----~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 256 (406)
|+|+.||+|++||..+++++ ..+.+|...|++++|.| ..++|++++.||.++|||+..++++..+.+| ...|+
T Consensus 173 ASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgH-T~~VT 251 (480)
T KOG0271|consen 173 ASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGH-TASVT 251 (480)
T ss_pred hccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccC-ccceE
Confidence 99999999999999988765 45677778999999965 6779999999999999999999999988875 45689
Q ss_pred EEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEE------------------------------------------
Q 015490 257 SCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIR------------------------------------------ 294 (406)
Q Consensus 257 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~------------------------------------------ 294 (406)
|+.|--++ ++.+++.|++|++|+...+++.+
T Consensus 252 CvrwGG~g-------liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~A 324 (480)
T KOG0271|consen 252 CVRWGGEG-------LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKA 324 (480)
T ss_pred EEEEcCCc-------eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHH
Confidence 99998665 45677778888888766543332
Q ss_pred -------------------------------------EeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEE
Q 015490 295 -------------------------------------TKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTA 337 (406)
Q Consensus 295 -------------------------------------~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~ 337 (406)
...+|..-|..+.||||+++||+++-|..|++||.++|+.+..
T Consensus 325 l~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~las 404 (480)
T KOG0271|consen 325 LERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLAS 404 (480)
T ss_pred HHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhh
Confidence 2334445688999999999999999999999999999999999
Q ss_pred eecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490 338 VKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL 381 (406)
Q Consensus 338 ~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~ 381 (406)
+. +|-++|+.++|+.|.++|++||.|.++++|++++.+....+
T Consensus 405 fR-GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DL 447 (480)
T KOG0271|consen 405 FR-GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDL 447 (480)
T ss_pred hh-hccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccC
Confidence 95 99999999999999999999999999999999998765443
No 4
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.5e-39 Score=257.19 Aligned_cols=260 Identities=20% Similarity=0.294 Sum_probs=227.4
Q ss_pred ccceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCE
Q 015490 103 DQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTI 181 (406)
Q Consensus 103 ~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~ 181 (406)
..+.++++.....|..+.+.|+++.|++++...+|+|+++..... ++.++.++ ..|+++.|..+|+.
T Consensus 30 G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~------------Pv~t~e~h~kNVtaVgF~~dgrW 97 (311)
T KOG0315|consen 30 GICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPN------------PVATFEGHTKNVTAVGFQCDGRW 97 (311)
T ss_pred CeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCC------------ceeEEeccCCceEEEEEeecCeE
Confidence 358889998899999999999999999999999999998876332 44455555 89999999999999
Q ss_pred EEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEE
Q 015490 182 FAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFS 261 (406)
Q Consensus 182 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 261 (406)
+++|++||+++|||++...+.+ ...+..+|+++..+|+...|+++..+|.|++||+....+...+.......+.++...
T Consensus 98 MyTgseDgt~kIWdlR~~~~qR-~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~ 176 (311)
T KOG0315|consen 98 MYTGSEDGTVKIWDLRSLSCQR-NYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVM 176 (311)
T ss_pred EEecCCCceEEEEeccCcccch-hccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEc
Confidence 9999999999999999865554 445668999999999999999999999999999999888888877777889999999
Q ss_pred cCCCCceEEEEEEEcCCCcEEEEEeCCCc------eEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc-eE
Q 015490 262 PLNNEDYVLYIAAITDRGASIVTWNTTTW------KRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSL-QV 334 (406)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~i~~~d~~~~------~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~-~~ 334 (406)
|+|.. ++.....|..++|++-+. +++..++.|.+.+..+.+|||+++||+++.|.+++||+.++. +.
T Consensus 177 ~dgsm------l~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kl 250 (311)
T KOG0315|consen 177 PDGSM------LAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKL 250 (311)
T ss_pred CCCcE------EEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceee
Confidence 99984 455577899999998653 356678889999999999999999999999999999999988 55
Q ss_pred EEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCch
Q 015490 335 RTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLN 382 (406)
Q Consensus 335 ~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~ 382 (406)
...+. +|...++.++||.||+||+|++.|+.+++|+++.++++...+
T Consensus 251 e~~l~-gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~ 297 (311)
T KOG0315|consen 251 ELVLT-GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQ 297 (311)
T ss_pred EEEee-cCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecC
Confidence 55554 899999999999999999999999999999999999876543
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.9e-41 Score=284.65 Aligned_cols=251 Identities=18% Similarity=0.205 Sum_probs=226.8
Q ss_pred EEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCC--CCEEE
Q 015490 108 ELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSE--GTIFA 183 (406)
Q Consensus 108 ~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~--g~~l~ 183 (406)
.--+.+.+|..+.|++|+..|++|+ +|.+++|.... ...++.+.+| ..+.++.|+|. +..+|
T Consensus 170 SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~--------------~~~~~~l~gH~~~v~~~~fhP~~~~~~la 235 (459)
T KOG0272|consen 170 SQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQ--------------CNLLQTLRGHTSRVGAAVFHPVDSDLNLA 235 (459)
T ss_pred hhccCCCcceeeEeecCCCeEEEeecCCceeEeecCC--------------cceeEEEeccccceeeEEEccCCCcccee
Confidence 3346788999999999999999998 99999987653 2344455555 88999999996 57899
Q ss_pred EeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcC
Q 015490 184 AGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPL 263 (406)
Q Consensus 184 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (406)
+|+.||++++|++++...+..+.+|...|..++|+|+|++|++++.|.+-++||++++..+....+| ...+.+++|.++
T Consensus 236 t~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGH-s~~v~~iaf~~D 314 (459)
T KOG0272|consen 236 TASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGH-SKGVFSIAFQPD 314 (459)
T ss_pred eeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccc-ccccceeEecCC
Confidence 9999999999999998999999999999999999999999999999999999999998887776665 556889999999
Q ss_pred CCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccc
Q 015490 264 NNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHL 343 (406)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 343 (406)
|. ++++|+.|..-++||+++++++..+.+|..+|.++.|+|+|..||+|+.|++++|||++..+.+.++. +|.
T Consensus 315 GS------L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip-AH~ 387 (459)
T KOG0272|consen 315 GS------LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP-AHS 387 (459)
T ss_pred Cc------eeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc-ccc
Confidence 98 68999999999999999999999999999999999999999999999999999999999999999986 999
Q ss_pred cceEEEEEcC-CCCeEEEEECCCcEEEEEecCCcCCCC
Q 015490 344 GIVTALAFSY-DSRALVSASMDSSVRVTVIEDKKKSGG 380 (406)
Q Consensus 344 ~~v~~~~~sp-~~~~l~s~s~dg~i~iw~~~~~~~~~~ 380 (406)
.-|+.+.|+| .|.+|+|++.|++++||...+...+..
T Consensus 388 nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ks 425 (459)
T KOG0272|consen 388 NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKS 425 (459)
T ss_pred chhhheEecccCCeEEEEcccCcceeeecCCCcccchh
Confidence 9999999999 689999999999999999988776543
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.9e-39 Score=257.87 Aligned_cols=264 Identities=20% Similarity=0.226 Sum_probs=223.5
Q ss_pred cceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCC
Q 015490 104 QPVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGT 180 (406)
Q Consensus 104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~ 180 (406)
....++++|++.|+.++..+.+..++..+ |..+.+|.+...+.+ .+.+++.+.+| ..|..+..++||+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~---------~G~~~r~~~GHsH~v~dv~~s~dg~ 76 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK---------YGVPVRRLTGHSHFVSDVVLSSDGN 76 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc---------cCceeeeeeccceEecceEEccCCc
Confidence 34568999999999999999877666655 666666665544211 34455556665 7799999999999
Q ss_pred EEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEE
Q 015490 181 IFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRF 260 (406)
Q Consensus 181 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 260 (406)
+.++++.|+++++||+.+++..+.+.+|...|.+++|++|.+.+++|+.|++|++|+.............+...|.++.|
T Consensus 77 ~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrf 156 (315)
T KOG0279|consen 77 FALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRF 156 (315)
T ss_pred eEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999996554444333333778999999
Q ss_pred EcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeec
Q 015490 261 SPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKK 340 (406)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 340 (406)
+|+... .++++++.|++|++||+++.+....+.+|.+.++.+++||||..+++|+.||.+.+||++.++.+..+
T Consensus 157 sP~~~~----p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-- 230 (315)
T KOG0279|consen 157 SPNESN----PIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-- 230 (315)
T ss_pred cCCCCC----cEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec--
Confidence 999744 36778899999999999999999999999999999999999999999999999999999999998887
Q ss_pred ccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCchH
Q 015490 341 AHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLNL 383 (406)
Q Consensus 341 ~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 383 (406)
.|...|.+++|+|+...|+.+ .+..|+|||+++++.+..+.+
T Consensus 231 ~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~ 272 (315)
T KOG0279|consen 231 EAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKL 272 (315)
T ss_pred cCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccc
Confidence 499999999999986666655 556699999999988776654
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.3e-38 Score=255.14 Aligned_cols=273 Identities=20% Similarity=0.243 Sum_probs=233.9
Q ss_pred CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccc
Q 015490 68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVEN 146 (406)
Q Consensus 68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~ 146 (406)
+.+.++.+.-.| .+..||.-+ ...+..+.-...+|..++|+|.|.++++|+ |+...||.+...+.
T Consensus 66 Dsr~ivSaSqDG----------klIvWDs~T----tnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~ 131 (343)
T KOG0286|consen 66 DSRRIVSASQDG----------KLIVWDSFT----TNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDA 131 (343)
T ss_pred CcCeEEeeccCC----------eEEEEEccc----ccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccc
Confidence 677777654333 466677644 345666777789999999999999999999 99999999885532
Q ss_pred cceeecceeccceeeeccccc-CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEcc-CCCEE
Q 015490 147 TEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSP-DGKFL 224 (406)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l 224 (406)
+. ..+..+.+.+| +.+.|+.|-+|+ .|++++.|.+..+||+++++.+..+.+|.+.|.+++++| +++.+
T Consensus 132 ~g--------~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntF 202 (343)
T KOG0286|consen 132 EG--------NVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTF 202 (343)
T ss_pred cc--------cceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeE
Confidence 21 11223334444 889999999865 577999999999999999999999999999999999999 99999
Q ss_pred EEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeec--CCC
Q 015490 225 VSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVV--REP 302 (406)
Q Consensus 225 ~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~ 302 (406)
++|+.|+..++||++.+.+.+.+.+|.. .|.+++|.|+|. .++++++|++.++||++..+.+..+... ..+
T Consensus 203 vSg~cD~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~------afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~g 275 (343)
T KOG0286|consen 203 VSGGCDKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGD------AFATGSDDATCRLYDLRADQELAVYSHDSIICG 275 (343)
T ss_pred EecccccceeeeeccCcceeEeeccccc-ccceEEEccCCC------eeeecCCCceeEEEeecCCcEEeeeccCcccCC
Confidence 9999999999999999999999997654 588999999997 4789999999999999998888777643 367
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEE
Q 015490 303 VSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTV 371 (406)
Q Consensus 303 i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~ 371 (406)
|++++||..|++|++|..|.++.+||.-.++....+. +|...|.++..+|||..|+|||.|.+++||.
T Consensus 276 itSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~-GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 276 ITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA-GHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ceeEEEcccccEEEeeecCCceeEeeccccceEEEee-ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999999999999999999999999999999996 9999999999999999999999999999994
No 8
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.3e-39 Score=292.37 Aligned_cols=271 Identities=19% Similarity=0.283 Sum_probs=232.6
Q ss_pred CccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEeccccc------ceeec------------ceecccee
Q 015490 100 SLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENT------EIRRL------------GVKISEKV 160 (406)
Q Consensus 100 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~------~~~~~------------~~~~~~~~ 160 (406)
.++.-...++......++|..|++|++.+|+|. +..+++|.+.....+ ....+ +.......
T Consensus 365 ~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~ 444 (707)
T KOG0263|consen 365 SLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTS 444 (707)
T ss_pred CCCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCcee
Confidence 333445666666778899999999999888886 888899888743211 11111 11111122
Q ss_pred eecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCC
Q 015490 161 LSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLAS 240 (406)
Q Consensus 161 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~ 240 (406)
..-..|.++|..+.|+|+.++|+++++|+++++|.+.+..++..+.+|..+|+++.|+|-|-++|++|.|++.++|....
T Consensus 445 ~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~ 524 (707)
T KOG0263|consen 445 RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH 524 (707)
T ss_pred EEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc
Confidence 22344569999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC
Q 015490 241 SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA 320 (406)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~ 320 (406)
..+.+.+.+|.. .+.|+.|+|+..+ +++|+.|.++++||..++..++.|.+|.++|.+++|||+|++|++|+.
T Consensus 525 ~~PlRifaghls-DV~cv~FHPNs~Y------~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~e 597 (707)
T KOG0263|consen 525 NKPLRIFAGHLS-DVDCVSFHPNSNY------VATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDE 597 (707)
T ss_pred CCchhhhccccc-ccceEEECCcccc------cccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeeccc
Confidence 888888877654 5889999999984 788899999999999999999999999999999999999999999999
Q ss_pred CCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCC
Q 015490 321 SGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKS 378 (406)
Q Consensus 321 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~ 378 (406)
||.|.+||+.+++.+..+. +|.+.|.++.|+.||..||+|+.|++|++||+......
T Consensus 598 d~~I~iWDl~~~~~v~~l~-~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 598 DGLIKIWDLANGSLVKQLK-GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred CCcEEEEEcCCCcchhhhh-cccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 9999999999999999996 89999999999999999999999999999999876654
No 9
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.3e-38 Score=268.30 Aligned_cols=272 Identities=15% Similarity=0.164 Sum_probs=230.4
Q ss_pred CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccc
Q 015490 68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVEN 146 (406)
Q Consensus 68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~ 146 (406)
.++-++++...|+ +..|+... -.....++.|..+|+++.|++++.++++|. ++.+++|..+.+.-
T Consensus 107 eGRRLltgs~SGE----------FtLWNg~~----fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV 172 (464)
T KOG0284|consen 107 EGRRLLTGSQSGE----------FTLWNGTS----FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV 172 (464)
T ss_pred CCceeEeeccccc----------EEEecCce----eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh
Confidence 6677777755553 33333322 112335678999999999999999999996 77778876554321
Q ss_pred cceeecceeccceeeeccccc-CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEE
Q 015490 147 TEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLV 225 (406)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 225 (406)
+. ...++ ..|++++|||+...|++++.||+|+|||....+....+.+|.-.|.+++|+|....|+
T Consensus 173 k~--------------~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLia 238 (464)
T KOG0284|consen 173 KI--------------IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIA 238 (464)
T ss_pred HH--------------hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeE
Confidence 11 12244 7899999999999999999999999999988888878888888999999999999999
Q ss_pred EEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEE
Q 015490 226 SLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSS 305 (406)
Q Consensus 226 s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~ 305 (406)
+++.|..|++||.+++.++.++..| ...|..+.|+++++ ++++++.|..++++|+++.+.+.++++|+..+++
T Consensus 239 sgskDnlVKlWDprSg~cl~tlh~H-KntVl~~~f~~n~N------~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~ 311 (464)
T KOG0284|consen 239 SGSKDNLVKLWDPRSGSCLATLHGH-KNTVLAVKFNPNGN------WLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTS 311 (464)
T ss_pred EccCCceeEeecCCCcchhhhhhhc-cceEEEEEEcCCCC------eeEEccCCceEEEEehhHhHHHHHhhcchhhhee
Confidence 9999999999999999999998765 55688999999996 5678899999999999999999999999999999
Q ss_pred EEEcC-CCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490 306 FNVSA-DGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED 374 (406)
Q Consensus 306 ~~~sp-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~ 374 (406)
+.|+| ...++.+|+.||.|..|.+...+++..+..+|...|++++|+|=|..|++|+.|.++++|.-..
T Consensus 312 ~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 312 LTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred eccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence 99999 5678889999999999999988888888779999999999999999999999999999997643
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2e-35 Score=237.62 Aligned_cols=249 Identities=19% Similarity=0.283 Sum_probs=207.2
Q ss_pred cccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCC
Q 015490 102 SDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEG 179 (406)
Q Consensus 102 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g 179 (406)
...+++.+.||+..|..+..++||.+.++++ |+.+++|+... .+..+.+. |...|.+++|++|.
T Consensus 52 ~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~--------------g~~t~~f~GH~~dVlsva~s~dn 117 (315)
T KOG0279|consen 52 YGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLAT--------------GESTRRFVGHTKDVLSVAFSTDN 117 (315)
T ss_pred cCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecC--------------CcEEEEEEecCCceEEEEecCCC
Confidence 3568899999999999999999999999988 99999987764 22333344 44789999999999
Q ss_pred CEEEEeeCCCeEEEEeCCCcceEeeeecc--CCceeEEEEccC--CCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceE
Q 015490 180 TIFAAGSENGNLRVFKWPSLEIILNESEA--HASVKDLSFSPD--GKFLVSLGNRGPGRVWDLASSAVATPLAKENDELF 255 (406)
Q Consensus 180 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~i~~~~~s~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~ 255 (406)
+.+++|+.|.+|++|+.... +..++..+ ..-|+|+.|+|+ ..+|++++.|+++++||+++-+....+.++ ...+
T Consensus 118 ~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh-~~~v 195 (315)
T KOG0279|consen 118 RQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGH-SGYV 195 (315)
T ss_pred ceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccc-cccE
Confidence 99999999999999997654 44444443 568999999998 679999999999999999998888887764 5578
Q ss_pred EEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEE
Q 015490 256 ASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVR 335 (406)
Q Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~ 335 (406)
+.++++|||. +.++++.||.+.+||++.++.+..+. +...|.+++|+|+.-+|+.+. +..|+|||+.+...+
T Consensus 196 ~t~~vSpDGs------lcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v 267 (315)
T KOG0279|consen 196 NTVTVSPDGS------LCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVV 267 (315)
T ss_pred EEEEECCCCC------EEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhh
Confidence 9999999998 57889999999999999999988876 457899999999976666655 555999999998877
Q ss_pred EEeeccc--------ccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490 336 TAVKKAH--------LGIVTALAFSYDSRALVSASMDSSVRVTVIED 374 (406)
Q Consensus 336 ~~~~~~~--------~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~ 374 (406)
..+.... .....+++|++||..|++|-.|+.|++|.+..
T Consensus 268 ~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 268 EELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred hhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence 6664211 12245889999999999999999999999853
No 11
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-35 Score=267.96 Aligned_cols=258 Identities=22% Similarity=0.330 Sum_probs=225.7
Q ss_pred cceeEEecCCCCceEEEEccCCCeEEEEecC--CeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCE
Q 015490 104 QPVAELRTDSDLPYRMAIHPHGDGIICALQN--SCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTI 181 (406)
Q Consensus 104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 181 (406)
..++.+.-....|..++|+..|.+++.++.+ .+-||.|... .-.++...|...++++++||||++
T Consensus 298 ~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE-------------sYVlKQQgH~~~i~~l~YSpDgq~ 364 (893)
T KOG0291|consen 298 NLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE-------------SYVLKQQGHSDRITSLAYSPDGQL 364 (893)
T ss_pred eEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc-------------ceeeeccccccceeeEEECCCCcE
Confidence 4677777788899999999999999999865 6667777642 223333345588999999999999
Q ss_pred EEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEE
Q 015490 182 FAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFS 261 (406)
Q Consensus 182 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 261 (406)
+|+|+.||.|+|||...+-|..++..|...|+.+.|+..|+.+++++-||+|+.||+...+..+++..+......+++..
T Consensus 365 iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD 444 (893)
T KOG0291|consen 365 IATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVD 444 (893)
T ss_pred EEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888888899999
Q ss_pred cCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc-eEEEEeec
Q 015490 262 PLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSL-QVRTAVKK 340 (406)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~ 340 (406)
|.|.- +.+.+-+.-.|.+|++++|+.+..+.+|.++|.+++|+|++..|++++.|.+|++||+-.. ....++.
T Consensus 445 ~sGel-----V~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~- 518 (893)
T KOG0291|consen 445 PSGEL-----VCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE- 518 (893)
T ss_pred CCCCE-----EEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-
Confidence 99972 4444455568999999999999999999999999999999999999999999999998654 3444553
Q ss_pred ccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490 341 AHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL 381 (406)
Q Consensus 341 ~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~ 381 (406)
+...+..++|+|||+-|++++.||.|.+||.+.+..++.+
T Consensus 519 -i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~I 558 (893)
T KOG0291|consen 519 -IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSI 558 (893)
T ss_pred -eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccc
Confidence 7778999999999999999999999999999988877544
No 12
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.3e-35 Score=238.71 Aligned_cols=256 Identities=14% Similarity=0.193 Sum_probs=219.0
Q ss_pred ceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEE
Q 015490 105 PVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFA 183 (406)
Q Consensus 105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 183 (406)
..+++++|.+.|+++.|++|.+++++++ |+.+.| ||.-+....+.+.+ ....|..++|+|.|+++|
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIv--WDs~TtnK~haipl-----------~s~WVMtCA~sPSg~~VA 113 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIV--WDSFTTNKVHAIPL-----------PSSWVMTCAYSPSGNFVA 113 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEE--EEcccccceeEEec-----------CceeEEEEEECCCCCeEE
Confidence 4478999999999999999999999997 665555 55555554444433 346789999999999999
Q ss_pred EeeCCCeEEEEeCCCc------ceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEE
Q 015490 184 AGSENGNLRVFKWPSL------EIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFAS 257 (406)
Q Consensus 184 ~~~~dg~i~vwd~~~~------~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 257 (406)
+|+-|+...||++.+. +..+.+.+|.+-+.++.|.+|+ +|+++|.|.+..+||+++++....+.+|.. .|.+
T Consensus 114 cGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~g-DV~s 191 (343)
T KOG0286|consen 114 CGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTG-DVMS 191 (343)
T ss_pred ecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcc-cEEE
Confidence 9999999999999754 3445678888899999998855 689999999999999999999999987655 4779
Q ss_pred EEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEE
Q 015490 258 CRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTA 337 (406)
Q Consensus 258 ~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~ 337 (406)
++++|...+ ..++++-|+..++||++.+.++++|.+|...|.+++|.|+|.-+++|+.|++.++||++..+.+..
T Consensus 192 lsl~p~~~n-----tFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ 266 (343)
T KOG0286|consen 192 LSLSPSDGN-----TFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAV 266 (343)
T ss_pred EecCCCCCC-----eEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEee
Confidence 999994333 467788899999999999999999999999999999999999999999999999999999988888
Q ss_pred eec-ccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCC
Q 015490 338 VKK-AHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGG 380 (406)
Q Consensus 338 ~~~-~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~ 380 (406)
+.. .-..+|++++||..|++|++|..|.++.+||.-.++.++.
T Consensus 267 ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~ 310 (343)
T KOG0286|consen 267 YSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGV 310 (343)
T ss_pred eccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEE
Confidence 752 2245799999999999999999999999999988776543
No 13
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.2e-35 Score=243.28 Aligned_cols=264 Identities=18% Similarity=0.232 Sum_probs=230.1
Q ss_pred EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-cc
Q 015490 90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NV 167 (406)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 167 (406)
.+..||..+. +....++||++.|..++|+..|+++++++ |-.+++|+.+. ..++++.+. |.
T Consensus 131 tikv~D~~tg----~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~-------------~~~c~ks~~gh~ 193 (406)
T KOG0295|consen 131 TIKVFDTETG----ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDT-------------FFRCIKSLIGHE 193 (406)
T ss_pred eEEEEEccch----hhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHH-------------HHHHHHHhcCcc
Confidence 6777787764 45788999999999999999999999887 55577877654 223333333 44
Q ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeec
Q 015490 168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPL 247 (406)
Q Consensus 168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 247 (406)
..|.++.|-|.|.++++++.|.+|+.|++.++-++..+.+|...|..++.+.||..+++++.|.++++|-+.++++...+
T Consensus 194 h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~l 273 (406)
T KOG0295|consen 194 HGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAEL 273 (406)
T ss_pred cceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhh
Confidence 77999999999999999999999999999999999999999999999999999999999999999999999999887777
Q ss_pred ccCCcceEEEEEEEcCCCCceE---------EEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEE
Q 015490 248 AKENDELFASCRFSPLNNEDYV---------LYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVG 318 (406)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~---------l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~ 318 (406)
..+ ..++.+++|.|......+ .-++++++.|++|++||+.++.++.++.+|...|..++|+|.|+||+++
T Consensus 274 R~h-Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sc 352 (406)
T KOG0295|consen 274 REH-EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSC 352 (406)
T ss_pred hcc-ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEE
Confidence 754 557889999875432111 1146778899999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEe
Q 015490 319 TASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVI 372 (406)
Q Consensus 319 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~ 372 (406)
.+|+++++||+++.++...+. .|..-|+++.|+.+..+++||+-|.++++|.-
T Consensus 353 aDDktlrvwdl~~~~cmk~~~-ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 353 ADDKTLRVWDLKNLQCMKTLE-AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ecCCcEEEEEeccceeeeccC-CCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999999999997 89999999999999999999999999999974
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.3e-35 Score=252.03 Aligned_cols=243 Identities=15% Similarity=0.205 Sum_probs=216.7
Q ss_pred CCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEeeCCCe
Q 015490 113 SDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAGSENGN 190 (406)
Q Consensus 113 ~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~ 190 (406)
+..|++++|+.+|..|++|. +|.++||+.+.. .+.++. |.++|.++.|+.+|.+|++++.|++
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~---------------l~~tl~~HkgPI~slKWnk~G~yilS~~vD~t 299 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN---------------LISTLGQHKGPIFSLKWNKKGTYILSGGVDGT 299 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCch---------------hhhhhhccCCceEEEEEcCCCCEEEeccCCcc
Confidence 46899999999999999998 999999876532 222333 5599999999999999999999999
Q ss_pred EEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEE
Q 015490 191 LRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVL 270 (406)
Q Consensus 191 i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 270 (406)
+.+||..++.....+..|..+-.++.|-.+. .+++++.|+.|+|+.+....++.++.+| ...|.++.|+|.+.
T Consensus 300 tilwd~~~g~~~q~f~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~~GH-~g~V~alk~n~tg~----- 372 (524)
T KOG0273|consen 300 TILWDAHTGTVKQQFEFHSAPALDVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTFIGH-HGEVNALKWNPTGS----- 372 (524)
T ss_pred EEEEeccCceEEEeeeeccCCccceEEecCc-eEeecCCCceEEEEEecCCCcceeeecc-cCceEEEEECCCCc-----
Confidence 9999999999888888777776889997554 6899999999999999999999999984 55688999999997
Q ss_pred EEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCC---------CEEEEEeCCCcEEEEECCCceEEEEeecc
Q 015490 271 YIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADG---------KLLAVGTASGDISIIDSSSLQVRTAVKKA 341 (406)
Q Consensus 271 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 341 (406)
++++++.|+++++|.+........+..|...|..+.|+|+| ..+++++.|++|++||+..+.++..+. .
T Consensus 373 -LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~-k 450 (524)
T KOG0273|consen 373 -LLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM-K 450 (524)
T ss_pred -eEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec-c
Confidence 67888999999999999989999999999999999999964 478999999999999999999999996 7
Q ss_pred cccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCC
Q 015490 342 HLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSG 379 (406)
Q Consensus 342 ~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~ 379 (406)
|..+|.+++|+|+|+++++|+.||.|.+|++++++...
T Consensus 451 H~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~ 488 (524)
T KOG0273|consen 451 HQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVK 488 (524)
T ss_pred CCCceEEEEecCCCcEEEecCCCCeeEeccccchheeE
Confidence 99999999999999999999999999999999988654
No 15
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-34 Score=246.12 Aligned_cols=235 Identities=41% Similarity=0.668 Sum_probs=194.4
Q ss_pred EEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecc-
Q 015490 170 QLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLA- 248 (406)
Q Consensus 170 v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~- 248 (406)
-.+++|+.+|..+++|+.||++|||++.+...+.....|+..|.+++|+|||+.|++.+.| ..+||+.+++..+....
T Consensus 147 ~k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 147 QKVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred ceEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 3789999999999999999999999999988888888999999999999999999999999 99999999997777665
Q ss_pred cCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceE-----EEEeeecCCCeEEEEEcCCCCEEEEEeCCCc
Q 015490 249 KENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR-----IRTKQVVREPVSSFNVSADGKLLAVGTASGD 323 (406)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~-----~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~ 323 (406)
...+..+..|.|+.++.. ..+++++.....+.|..||+..++. .++.......|++++.+++|++++.|+.||.
T Consensus 226 ~~k~~~~~~cRF~~d~~~-~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQ-ETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred cccchhhhhceecccCCC-ceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence 344455778999988866 5677788888888888888765432 1122222357999999999999999999999
Q ss_pred EEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecC------C--cCCCCchHHH-HHHHHHHHH
Q 015490 324 ISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED------K--KKSGGLNLWI-IIFILLLAM 394 (406)
Q Consensus 324 i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~------~--~~~~~~~~~~-~~~~~~~~~ 394 (406)
|-|++..+.+.+...++.|...|+.+.|+||.+++++.+.|....|..+.- + .....++.|. +++++++++
T Consensus 305 Vai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~~~~~~~~~~~~~~~~~~~lL~~l~~I~ 384 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDKTMQLHRLPKRRKIPAWLALLFVLSYII 384 (398)
T ss_pred EEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeecccccccccccchhhhHHHHHHHHHHHHH
Confidence 999999999999999889999999999999999999999999999998865 2 2335667774 444455555
Q ss_pred HH-HHHHhcCCCC
Q 015490 395 AA-YFVKAKGIIP 406 (406)
Q Consensus 395 ~~-~~~~~~~~~~ 406 (406)
++ |+++..|+++
T Consensus 385 ~~~y~~~s~gii~ 397 (398)
T KOG0771|consen 385 AYFYLLNSHGIIF 397 (398)
T ss_pred HHHHHHhhcceec
Confidence 55 7788888764
No 16
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=7.3e-34 Score=236.59 Aligned_cols=261 Identities=18% Similarity=0.189 Sum_probs=212.6
Q ss_pred EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccC
Q 015490 90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVG 168 (406)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (406)
..+.|+..+. ....++.+|.+.|+++.|+.+|.+|++|. ++.++||.... +.....+ ...-.
T Consensus 87 ~AflW~~~~g----e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~st--g~~~~~~-----------~~e~~ 149 (399)
T KOG0296|consen 87 LAFLWDISTG----EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVST--GGEQWKL-----------DQEVE 149 (399)
T ss_pred eEEEEEccCC----cceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEccc--CceEEEe-----------ecccC
Confidence 4567777663 36788999999999999999999999997 88888876553 3222221 12336
Q ss_pred cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecc
Q 015490 169 QQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLA 248 (406)
Q Consensus 169 ~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 248 (406)
.+.-+.|+|.+..|+.|+.||.+.+|.+.++.....+.+|..++++=.|.|+|++++++..||+|++||..++++...+.
T Consensus 150 dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 150 DIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKIT 229 (399)
T ss_pred ceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEec
Confidence 78889999999999999999999999999987777888988899999999999999999999999999999998877665
Q ss_pred cCCcce--------------------------------------------------EEEEEEEcCCCCceEEEEEEEcCC
Q 015490 249 KENDEL--------------------------------------------------FASCRFSPLNNEDYVLYIAAITDR 278 (406)
Q Consensus 249 ~~~~~~--------------------------------------------------~~~~~~~~~~~~~~~l~~~~~~~~ 278 (406)
...... +.++.+.|... .+-+++.++-
T Consensus 230 ~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss---~lpL~A~G~v 306 (399)
T KOG0296|consen 230 QAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSS---KLPLAACGSV 306 (399)
T ss_pred ccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccc---ccchhhcccc
Confidence 211100 11111222211 1335777888
Q ss_pred CcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeE
Q 015490 279 GASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRAL 358 (406)
Q Consensus 279 ~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 358 (406)
||+|.+||+...+...... |...|..+.|-+ ..+|++++.+|.|+.||.++|+.+..+. +|...|.+++.+|+.+++
T Consensus 307 dG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~-GH~~~Il~f~ls~~~~~v 383 (399)
T KOG0296|consen 307 DGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYT-GHQMGILDFALSPQKRLV 383 (399)
T ss_pred cceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEe-cCchheeEEEEcCCCcEE
Confidence 9999999999877655554 667799999998 7899999999999999999999999996 999999999999999999
Q ss_pred EEEECCCcEEEEEec
Q 015490 359 VSASMDSSVRVTVIE 373 (406)
Q Consensus 359 ~s~s~dg~i~iw~~~ 373 (406)
+|+|.|++.+||++.
T Consensus 384 vT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 384 VTVSDDNTALVFEVP 398 (399)
T ss_pred EEecCCCeEEEEecC
Confidence 999999999999875
No 17
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=8.9e-36 Score=251.21 Aligned_cols=250 Identities=15% Similarity=0.227 Sum_probs=215.5
Q ss_pred CCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCe
Q 015490 112 DSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGN 190 (406)
Q Consensus 112 h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 190 (406)
-...|..+.|.|+|+.|++|+ .|...+|+-..-..+.+ ...|...|+++.|+++|.++++|+.+|.
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEti-------------lQaHDs~Vr~m~ws~~g~wmiSgD~gG~ 161 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETI-------------LQAHDSPVRTMKWSHNGTWMISGDKGGM 161 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHH-------------hhhhcccceeEEEccCCCEEEEcCCCce
Confidence 346789999999999999997 88888876532221111 1236689999999999999999999999
Q ss_pred EEEEeCCCcceEeeeeccC-CceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceE
Q 015490 191 LRVFKWPSLEIILNESEAH-ASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYV 269 (406)
Q Consensus 191 i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (406)
|++|+..- ..+..+..|+ ..|++++|+|+...++++++||+|+|||....+....+.+ ++..+.++.|+|...
T Consensus 162 iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~G-HgwdVksvdWHP~kg---- 235 (464)
T KOG0284|consen 162 IKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRG-HGWDVKSVDWHPTKG---- 235 (464)
T ss_pred EEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheecc-CCCCcceeccCCccc----
Confidence 99999654 4455566666 5999999999999999999999999999998888777765 566789999999887
Q ss_pred EEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEE
Q 015490 270 LYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTAL 349 (406)
Q Consensus 270 l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 349 (406)
++++++.|..|++||.+++.++.++..|+..|..+.|+|++++|++++.|..++++|+++.+.+..+. +|...|+++
T Consensus 236 --LiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r-~Hkkdv~~~ 312 (464)
T KOG0284|consen 236 --LIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR-GHKKDVTSL 312 (464)
T ss_pred --eeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh-cchhhheee
Confidence 57888999999999999999999999999999999999999999999999999999999888888885 999999999
Q ss_pred EEcCC-CCeEEEEECCCcEEEEEecCCcCCCCchH
Q 015490 350 AFSYD-SRALVSASMDSSVRVTVIEDKKKSGGLNL 383 (406)
Q Consensus 350 ~~sp~-~~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 383 (406)
.|+|- ..+|.+|+.||.|..|.+...+++..++.
T Consensus 313 ~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~ 347 (464)
T KOG0284|consen 313 TWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP 347 (464)
T ss_pred ccccccccceeeccCCCceEEEeccccccccCCCc
Confidence 99994 56788999999999999997777766553
No 18
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-34 Score=240.72 Aligned_cols=257 Identities=17% Similarity=0.267 Sum_probs=226.8
Q ss_pred cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCE
Q 015490 104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTI 181 (406)
Q Consensus 104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~ 181 (406)
.....+.+|..+|+.+-|+|+-..+++++ +.++++|+.. +++....+++| +.+..++|+..|++
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~--------------tg~~e~~LrGHt~sv~di~~~a~Gk~ 164 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTE--------------TGELERSLRGHTDSVFDISFDASGKY 164 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEcc--------------chhhhhhhhccccceeEEEEecCccE
Confidence 45667888999999999999988777776 7777776655 33334445555 77999999999999
Q ss_pred EEEeeCCCeEEEEeCCC-cceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEE
Q 015490 182 FAAGSENGNLRVFKWPS-LEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRF 260 (406)
Q Consensus 182 l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 260 (406)
+++++.|-.+++||.++ .+++....+|...|.+++|-|.|.+|++++.|.+|+.|++.++.++.++.++.. .+..++.
T Consensus 165 l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e-wvr~v~v 243 (406)
T KOG0295|consen 165 LATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE-WVRMVRV 243 (406)
T ss_pred EEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH-hEEEEEe
Confidence 99999998899999976 556677778888999999999999999999999999999999999999997654 7888999
Q ss_pred EcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCC---------------CCEEEEEeCCCcEE
Q 015490 261 SPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSAD---------------GKLLAVGTASGDIS 325 (406)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~---------------~~~l~~~~~dg~i~ 325 (406)
+.||. ++++++.|.+|++|-..++++...++.|..+|.+++|.|. +.++.+++.|++|+
T Consensus 244 ~~DGt------i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk 317 (406)
T KOG0295|consen 244 NQDGT------IIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIK 317 (406)
T ss_pred cCCee------EEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEE
Confidence 98887 7889999999999999999888899999999999999773 25899999999999
Q ss_pred EEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCch
Q 015490 326 IIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLN 382 (406)
Q Consensus 326 i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~ 382 (406)
+||+.++.++.++. +|...|.+++|+|.|+||+++.+|+++++||+++.+.+..++
T Consensus 318 ~wdv~tg~cL~tL~-ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 318 IWDVSTGMCLFTLV-GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred EEeccCCeEEEEEe-cccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC
Confidence 99999999999997 999999999999999999999999999999999998876665
No 19
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2e-32 Score=219.51 Aligned_cols=252 Identities=16% Similarity=0.207 Sum_probs=203.4
Q ss_pred ceeEEecCCCCceEEEEccC-CCeEEEEe-cCCeEEEEEec-ccccceeecceeccceeeecccccCcEEEEEECCCCCE
Q 015490 105 PVAELRTDSDLPYRMAIHPH-GDGIICAL-QNSCRLFEWDE-VENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTI 181 (406)
Q Consensus 105 ~~~~~~~h~~~v~~~~~sp~-~~~l~~~~-~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 181 (406)
.++.+.+|.+.+..++|+|- |..|++++ |+.++||.... .+-.... +..-.|...|++++|+|.|++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~----------vld~~hkrsVRsvAwsp~g~~ 75 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKT----------VLDDGHKRSVRSVAWSPHGRY 75 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEE----------eccccchheeeeeeecCCCcE
Confidence 56788999999999999998 77788877 88899987652 1111111 111135578999999999999
Q ss_pred EEEeeCCCeEEEEeCCC--cceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCe---eeeecccCCcceEE
Q 015490 182 FAAGSENGNLRVFKWPS--LEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSA---VATPLAKENDELFA 256 (406)
Q Consensus 182 l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~---~~~~~~~~~~~~~~ 256 (406)
||+|+.|.++.||.-.. .+++..+.+|...|.+++|+++|++||++++|+.|.||.+..+. +...+..| ...+.
T Consensus 76 La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~H-tqDVK 154 (312)
T KOG0645|consen 76 LASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEH-TQDVK 154 (312)
T ss_pred EEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccc-ccccc
Confidence 99999999999998653 46788899999999999999999999999999999999997543 44455544 45688
Q ss_pred EEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC---CceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--
Q 015490 257 SCRFSPLNNEDYVLYIAAITDRGASIVTWNTT---TWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSS-- 331 (406)
Q Consensus 257 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~---~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~-- 331 (406)
.+.|+|... ++++++.|.+|++|+-. ...++.++.+|...|.+++|++.|..|++++.|++++||.+.+
T Consensus 155 ~V~WHPt~d------lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~ 228 (312)
T KOG0645|consen 155 HVIWHPTED------LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL 228 (312)
T ss_pred EEEEcCCcc------eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc
Confidence 999999876 67888999999999765 5678999999999999999999999999999999999998321
Q ss_pred -----ceE------------------EEEee-----------------cccccceEEEEEcCC-CCeEEEEECCCcEEEE
Q 015490 332 -----LQV------------------RTAVK-----------------KAHLGIVTALAFSYD-SRALVSASMDSSVRVT 370 (406)
Q Consensus 332 -----~~~------------------~~~~~-----------------~~~~~~v~~~~~sp~-~~~l~s~s~dg~i~iw 370 (406)
++. +..+. ..|...|++++|.|. ...|++|+.||.|++|
T Consensus 229 ~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W 308 (312)
T KOG0645|consen 229 SGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFW 308 (312)
T ss_pred chhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEE
Confidence 110 00010 457788999999994 6789999999999999
Q ss_pred Eec
Q 015490 371 VIE 373 (406)
Q Consensus 371 ~~~ 373 (406)
.+.
T Consensus 309 ~l~ 311 (312)
T KOG0645|consen 309 ELE 311 (312)
T ss_pred Eec
Confidence 875
No 20
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.5e-32 Score=237.46 Aligned_cols=264 Identities=18% Similarity=0.272 Sum_probs=204.6
Q ss_pred cEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEE-EEe-cCCeEEEEEecccccceeecceeccceeeeccc
Q 015490 88 AVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGII-CAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE 165 (406)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~-~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (406)
...++.||..+ .+.++.||...|.+++|-|...+-+ +++ |+.+.+|. .. ..+.-.+++
T Consensus 128 fg~~F~~DSG~------SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffe--GP------------PFKFk~s~r 187 (603)
T KOG0318|consen 128 FGHVFLWDSGN------SVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFE--GP------------PFKFKSSFR 187 (603)
T ss_pred eeEEEEecCCC------ccceeeccceeEeeeeccCCCceEEEeccCCCeEEEee--CC------------Ceeeeeccc
Confidence 34788888865 7789999999999999999988655 455 67766653 21 222223333
Q ss_pred -ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeee---ccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCC
Q 015490 166 -NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNES---EAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASS 241 (406)
Q Consensus 166 -~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~ 241 (406)
|+.-|+|+.|+|||.++++++.||+|.+||=.+++.+..+. .|.+.|.+++|+||++.+++++.|.+++|||+.+.
T Consensus 188 ~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~ 267 (603)
T KOG0318|consen 188 EHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN 267 (603)
T ss_pred ccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc
Confidence 44789999999999999999999999999999999998887 67789999999999999999999999999999877
Q ss_pred eeeeeccc------------------------------------------CCcceEEEEEEEcCCCCceEEEEEEEcCCC
Q 015490 242 AVATPLAK------------------------------------------ENDELFASCRFSPLNNEDYVLYIAAITDRG 279 (406)
Q Consensus 242 ~~~~~~~~------------------------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 279 (406)
++++++.. .|...|+++..++++++ +.+++.|
T Consensus 268 slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~------i~SgsyD 341 (603)
T KOG0318|consen 268 SLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKT------IYSGSYD 341 (603)
T ss_pred ceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCE------EEeeccC
Confidence 65544321 24556888888888864 3455666
Q ss_pred cEEEEEeCCCceE-------------------------------------------------------------------
Q 015490 280 ASIVTWNTTTWKR------------------------------------------------------------------- 292 (406)
Q Consensus 280 ~~i~~~d~~~~~~------------------------------------------------------------------- 292 (406)
|.|.-||..++..
T Consensus 342 G~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~av 421 (603)
T KOG0318|consen 342 GHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAV 421 (603)
T ss_pred ceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEE
Confidence 6666666543111
Q ss_pred ----------------------------------------------------------EEEeeecCCCeEEEEEcCCCCE
Q 015490 293 ----------------------------------------------------------IRTKQVVREPVSSFNVSADGKL 314 (406)
Q Consensus 293 ----------------------------------------------------------~~~~~~~~~~i~~~~~sp~~~~ 314 (406)
......|.++|+++++|||+.+
T Consensus 422 v~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~y 501 (603)
T KOG0318|consen 422 VACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAY 501 (603)
T ss_pred EEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcE
Confidence 1112223447888888888888
Q ss_pred EEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490 315 LAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK 377 (406)
Q Consensus 315 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~ 377 (406)
||++...+.+.+||+.+.+.......-|...|.+++|+|+..++||||.|-.|.||+++.+.+
T Consensus 502 la~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~ 564 (603)
T KOG0318|consen 502 LAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAK 564 (603)
T ss_pred EEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhh
Confidence 888888888888888877664333335999999999999999999999999999999998765
No 21
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.2e-32 Score=236.33 Aligned_cols=261 Identities=19% Similarity=0.271 Sum_probs=220.8
Q ss_pred EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-
Q 015490 90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV- 167 (406)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 167 (406)
.+..|+... ..+.++..|.++|.++.|+.+|.+|++++ |++..+|+... +...+.+..+
T Consensus 258 ~~riw~~~G-----~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~--------------g~~~q~f~~~s 318 (524)
T KOG0273|consen 258 EARIWNKDG-----NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT--------------GTVKQQFEFHS 318 (524)
T ss_pred EEEEEecCc-----hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC--------------ceEEEeeeecc
Confidence 344555554 46778999999999999999999999998 99888876542 2233333344
Q ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeec
Q 015490 168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPL 247 (406)
Q Consensus 168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 247 (406)
.+-..+.|-.+ ..|++.+.|+.|+|+.+....++.++.+|+++|.++.|+|.+.+|+++|+|++++||..........+
T Consensus 319 ~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l 397 (524)
T KOG0273|consen 319 APALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDL 397 (524)
T ss_pred CCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhh
Confidence 33367888654 46889999999999999988999999999999999999999999999999999999999998888888
Q ss_pred ccCCcceEEEEEEEcCCCCce---EEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcE
Q 015490 248 AKENDELFASCRFSPLNNEDY---VLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDI 324 (406)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i 324 (406)
..|.. .|..+.|+|.+.... .-..+++.+.|++|++||...+.++..+..|..+|++++|+|+|+++|+|+.||.|
T Consensus 398 ~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V 476 (524)
T KOG0273|consen 398 QAHSK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCV 476 (524)
T ss_pred hhhcc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCee
Confidence 87654 477899999875311 11245666789999999999999999999999999999999999999999999999
Q ss_pred EEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490 325 SIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIE 373 (406)
Q Consensus 325 ~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~ 373 (406)
.+|+.++++..+.+. ..+.|..++|+.+|..|..+-.|+.+++-|++
T Consensus 477 ~iws~~~~~l~~s~~--~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 477 HIWSTKTGKLVKSYQ--GTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EeccccchheeEeec--CCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999999999985 56779999999999999999999999999985
No 22
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.6e-33 Score=256.21 Aligned_cols=206 Identities=18% Similarity=0.279 Sum_probs=189.3
Q ss_pred ceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCEE
Q 015490 105 PVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIF 182 (406)
Q Consensus 105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l 182 (406)
...++.||+++|+.+.|+|+.++|++++ |.++|+|.++.. .++..+.+| .+|.++.|+|-|-+|
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~--------------s~~V~y~GH~~PVwdV~F~P~GyYF 508 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW--------------SCLVIYKGHLAPVWDVQFAPRGYYF 508 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccc--------------eeEEEecCCCcceeeEEecCCceEE
Confidence 4556999999999999999999999998 899999998853 333334455 899999999999999
Q ss_pred EEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEc
Q 015490 183 AAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSP 262 (406)
Q Consensus 183 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (406)
|+++.|++-++|........+.+.+|...|.|+.|+|+..++++||.|.++++||+.+|..++.+.+ |..+|.+++|+|
T Consensus 509 atas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G-H~~~V~al~~Sp 587 (707)
T KOG0263|consen 509 ATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG-HKGPVTALAFSP 587 (707)
T ss_pred EecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC-CCCceEEEEEcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999987 456799999999
Q ss_pred CCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 015490 263 LNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSS 331 (406)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~ 331 (406)
+|+ .+++++.++.|.+||+.+++.+..+.+|.+.|.++.||.+|..||+|+.|++|++||+..
T Consensus 588 ~Gr------~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 588 CGR------YLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CCc------eEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 998 478999999999999999999999999999999999999999999999999999999864
No 23
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.8e-32 Score=254.89 Aligned_cols=256 Identities=20% Similarity=0.288 Sum_probs=215.7
Q ss_pred eeEEecC-CCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeec-ccccCcEEEEEECCCCCEE
Q 015490 106 VAELRTD-SDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQ-LENVGQQLALTFDSEGTIF 182 (406)
Q Consensus 106 ~~~~~~h-~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l 182 (406)
...+.+| ...|.++.|+|+|+.++++. ++.+++|....... ...+. ..|...|.+++|+|+++++
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~------------~~~~~l~~h~~~v~~~~fs~d~~~l 218 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS------------NLLRELSGHTRGVSDVAFSPDGSYL 218 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc------------hhhccccccccceeeeEECCCCcEE
Confidence 4455444 78999999999999988886 89999988743221 12222 2355889999999999999
Q ss_pred EEeeCCCeEEEEeC-CCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEE
Q 015490 183 AAGSENGNLRVFKW-PSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFS 261 (406)
Q Consensus 183 ~~~~~dg~i~vwd~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 261 (406)
++++.|++|+|||+ ..+..+..+.+|...|++++|+|+++++++|+.|++|++||++++++...+..|.+ .+.+++|+
T Consensus 219 ~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~-~is~~~f~ 297 (456)
T KOG0266|consen 219 LSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD-GISGLAFS 297 (456)
T ss_pred EEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC-ceEEEEEC
Confidence 99999999999999 56688889999999999999999999999999999999999999999999987655 68899999
Q ss_pred cCCCCceEEEEEEEcCCCcEEEEEeCCCce--EEEEeeecCCC--eEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEE
Q 015490 262 PLNNEDYVLYIAAITDRGASIVTWNTTTWK--RIRTKQVVREP--VSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTA 337 (406)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~--i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~ 337 (406)
+++.. +++++.|+.|++||+.++. +...+..+... +++++|+|++.++++++.|+.+++||+..+.....
T Consensus 298 ~d~~~------l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~ 371 (456)
T KOG0266|consen 298 PDGNL------LVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGT 371 (456)
T ss_pred CCCCE------EEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceee
Confidence 99984 4555779999999999998 55666666544 99999999999999999999999999999999888
Q ss_pred eecccccc---eEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490 338 VKKAHLGI---VTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL 381 (406)
Q Consensus 338 ~~~~~~~~---v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~ 381 (406)
+. +|... +.+...++.++++++|+.|+.|++|++.++..+..+
T Consensus 372 ~~-~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l 417 (456)
T KOG0266|consen 372 YT-GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL 417 (456)
T ss_pred ec-ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh
Confidence 86 67654 445566788999999999999999999987654433
No 24
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.9e-32 Score=254.76 Aligned_cols=249 Identities=22% Similarity=0.352 Sum_probs=217.6
Q ss_pred ceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCEE
Q 015490 105 PVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIF 182 (406)
Q Consensus 105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l 182 (406)
....+.+|...|.+++|+|+++++++++ |.+++||+.. . ....++.+.+| ..|++++|+|+|+++
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~-~------------~~~~~~~l~gH~~~v~~~~f~p~g~~i 261 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK-D------------DGRNLKTLKGHSTYVTSVAFSPDGNLL 261 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeecc-C------------CCeEEEEecCCCCceEEEEecCCCCEE
Confidence 5566699999999999999999999987 8888888772 2 33444555444 889999999999999
Q ss_pred EEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCe--eeeecccCCcc-eEEEEE
Q 015490 183 AAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSA--VATPLAKENDE-LFASCR 259 (406)
Q Consensus 183 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~~~~~-~~~~~~ 259 (406)
++|+.|++|+|||++++++...+..|.+.|++++|++++++|++++.|+.|++||+.++. +...+...... .++++.
T Consensus 262 ~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (456)
T KOG0266|consen 262 VSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQ 341 (456)
T ss_pred EEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEE
Confidence 999999999999999999999999999999999999999999999999999999999998 55666665555 789999
Q ss_pred EEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCC---eEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEE
Q 015490 260 FSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREP---VSSFNVSADGKLLAVGTASGDISIIDSSSLQVRT 336 (406)
Q Consensus 260 ~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~ 336 (406)
|+|++.+ +.++..|+.+++||+..++....+..|... +.+...++.+.++++|+.|+.|.+||+.++..+.
T Consensus 342 fsp~~~~------ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~ 415 (456)
T KOG0266|consen 342 FSPNGKY------LLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQ 415 (456)
T ss_pred ECCCCcE------EEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhh
Confidence 9999984 455678999999999999999999888764 4455567899999999999999999999988888
Q ss_pred Eeeccc-ccceEEEEEcCCCCeEEEEE--CCCcEEEEEec
Q 015490 337 AVKKAH-LGIVTALAFSYDSRALVSAS--MDSSVRVTVIE 373 (406)
Q Consensus 337 ~~~~~~-~~~v~~~~~sp~~~~l~s~s--~dg~i~iw~~~ 373 (406)
.+. +| ...+..+.++|...++++++ .|+.+++|..+
T Consensus 416 ~l~-~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 416 RLE-GHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred hhc-CCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 886 89 88899999999999999988 78999999764
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.8e-32 Score=244.94 Aligned_cols=282 Identities=16% Similarity=0.253 Sum_probs=233.5
Q ss_pred CCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEeccc
Q 015490 67 RRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVE 145 (406)
Q Consensus 67 ~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~ 145 (406)
..+.+++++++.- ..+.+|.|..+. .+...++|...+++++++|||+++++|+ |+.++||+..
T Consensus 317 ~tGDWiA~g~~kl-------gQLlVweWqsEs------YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~--- 380 (893)
T KOG0291|consen 317 STGDWIAFGCSKL-------GQLLVWEWQSES------YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ--- 380 (893)
T ss_pred ccCCEEEEcCCcc-------ceEEEEEeeccc------eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEecc---
Confidence 3677887765432 256778887765 7778899999999999999999999998 9999997754
Q ss_pred ccceeecceeccceeeecccc-cCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCC-ceeEEEEccCCCE
Q 015490 146 NTEIRRLGVKISEKVLSQLEN-VGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHA-SVKDLSFSPDGKF 223 (406)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~ 223 (406)
..-++.++.. ...|+.+.|+..|+.+++.+-||+|+.||+...+..+++..... ...|++..|.|..
T Consensus 381 -----------SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGel 449 (893)
T KOG0291|consen 381 -----------SGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGEL 449 (893)
T ss_pred -----------CceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCE
Confidence 3445555554 48899999999999999999999999999999988888876655 7789999999998
Q ss_pred EEEEeCCC-CEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc-eEEEEeeecCC
Q 015490 224 LVSLGNRG-PGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW-KRIRTKQVVRE 301 (406)
Q Consensus 224 l~s~s~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~ 301 (406)
++.|+.|. .|.+|++++|+.+-.+.+| ..+|.+++|+|.+. .+++++.|.+|++||+-.. ..+.++. +..
T Consensus 450 V~AG~~d~F~IfvWS~qTGqllDiLsGH-EgPVs~l~f~~~~~------~LaS~SWDkTVRiW~if~s~~~vEtl~-i~s 521 (893)
T KOG0291|consen 450 VCAGAQDSFEIFVWSVQTGQLLDILSGH-EGPVSGLSFSPDGS------LLASGSWDKTVRIWDIFSSSGTVETLE-IRS 521 (893)
T ss_pred EEeeccceEEEEEEEeecCeeeehhcCC-CCcceeeEEccccC------eEEeccccceEEEEEeeccCceeeeEe-ecc
Confidence 88888775 5999999999999988876 45788999999998 5789999999999998654 3455554 446
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee-------------------cccccceEEEEEcCCCCeEEEEE
Q 015490 302 PVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK-------------------KAHLGIVTALAFSYDSRALVSAS 362 (406)
Q Consensus 302 ~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------------~~~~~~v~~~~~sp~~~~l~s~s 362 (406)
.+..++|+|+|+.|++++.||.|.+||...+.....+. .......+.+++|+||.++++|+
T Consensus 522 dvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG 601 (893)
T KOG0291|consen 522 DVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGG 601 (893)
T ss_pred ceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecC
Confidence 78999999999999999999999999998765553332 11235688999999999999999
Q ss_pred CCCcEEEEEecCCcCCCCchH
Q 015490 363 MDSSVRVTVIEDKKKSGGLNL 383 (406)
Q Consensus 363 ~dg~i~iw~~~~~~~~~~~~~ 383 (406)
..+.|++|++.++-.+..|++
T Consensus 602 ~sn~iCiY~v~~~vllkkfqi 622 (893)
T KOG0291|consen 602 ESNSICIYDVPEGVLLKKFQI 622 (893)
T ss_pred CcccEEEEECchhheeeeEEe
Confidence 999999999999888776654
No 26
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-33 Score=238.02 Aligned_cols=257 Identities=15% Similarity=0.152 Sum_probs=200.1
Q ss_pred CccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECC
Q 015490 100 SLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDS 177 (406)
Q Consensus 100 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~ 177 (406)
.++.+..+.+..|++.|.-+.||++|++||+++ |.+..||....... -+...++. |..+|..+.|||
T Consensus 211 qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-----------~kl~~tlvgh~~~V~yi~wSP 279 (519)
T KOG0293|consen 211 QIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-----------FKLKKTLVGHSQPVSYIMWSP 279 (519)
T ss_pred cCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-----------eeeeeeeecccCceEEEEECC
Confidence 445567778999999999999999999999998 88888888765432 12233333 558999999999
Q ss_pred CCCEEEEeeCCCeEEEEeCCCcceEeeeeccCC-ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcc---
Q 015490 178 EGTIFAAGSENGNLRVFKWPSLEIILNESEAHA-SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDE--- 253 (406)
Q Consensus 178 ~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~--- 253 (406)
|.++|++++.+..+++||+.+|.....+....+ .+.+++|.|||..+++|+.|+++..||+.. .......+-...
T Consensus 280 DdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~ 358 (519)
T KOG0293|consen 280 DDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVH 358 (519)
T ss_pred CCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhcccccccceeE
Confidence 999999999999999999999998877765534 899999999999999999999999999853 222222222223
Q ss_pred --------------------------------------eEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEE
Q 015490 254 --------------------------------------LFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRT 295 (406)
Q Consensus 254 --------------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~ 295 (406)
++++...+.+++. +...-.+..+++||+...+.++.
T Consensus 359 dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~------~LvnL~~qei~LWDl~e~~lv~k 432 (519)
T KOG0293|consen 359 DLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKL------ALVNLQDQEIHLWDLEENKLVRK 432 (519)
T ss_pred EEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcE------EEEEcccCeeEEeecchhhHHHH
Confidence 3444455555442 22223466788888887777777
Q ss_pred eeecCC--CeEEEEEcC-CCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCC-CCeEEEEECCCcEEEEE
Q 015490 296 KQVVRE--PVSSFNVSA-DGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYD-SRALVSASMDSSVRVTV 371 (406)
Q Consensus 296 ~~~~~~--~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~s~s~dg~i~iw~ 371 (406)
+.+|.. .+-.-||-- +..++++|++|+.|+||+..+++++..+. +|...|++++|+|. ..++|++|.||+||||.
T Consensus 433 Y~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls-GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 433 YFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS-GHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred hhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeec-CCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 777753 333445544 55899999999999999999999999996 99999999999995 56789999999999999
Q ss_pred ecCC
Q 015490 372 IEDK 375 (406)
Q Consensus 372 ~~~~ 375 (406)
....
T Consensus 512 ~~~~ 515 (519)
T KOG0293|consen 512 PSDN 515 (519)
T ss_pred CCcc
Confidence 8755
No 27
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3e-31 Score=233.86 Aligned_cols=268 Identities=22% Similarity=0.347 Sum_probs=219.9
Q ss_pred CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccc
Q 015490 68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVEN 146 (406)
Q Consensus 68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~ 146 (406)
.++.+++++..| .+.++.++.. +....+..|...+..+.|+|+++.+++++ ++.+.+|+++..
T Consensus 20 ~~~~l~~~~~~g--------~i~i~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~-- 83 (289)
T cd00200 20 DGKLLATGSGDG--------TIKVWDLETG------ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG-- 83 (289)
T ss_pred CCCEEEEeecCc--------EEEEEEeeCC------CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc--
Confidence 456666654322 3445544432 26677889999999999999998888887 888888776532
Q ss_pred cceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEE
Q 015490 147 TEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLV 225 (406)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 225 (406)
+. ...+. +...+.++.|+++++++++++.++.|++||+++++....+..|...|.+++|+|++.+++
T Consensus 84 ~~------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 151 (289)
T cd00200 84 EC------------VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVA 151 (289)
T ss_pred cc------------eEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEE
Confidence 11 11222 345899999999999999988899999999998888888877777999999999998888
Q ss_pred EEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEE
Q 015490 226 SLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSS 305 (406)
Q Consensus 226 s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~ 305 (406)
+++.++.+++||+++++....+..+ ...+.++.|+|+++. ++.++.++.|++||+++++.+..+..+...+.+
T Consensus 152 ~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~------l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~ 224 (289)
T cd00200 152 SSSQDGTIKLWDLRTGKCVATLTGH-TGEVNSVAFSPDGEK------LLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS 224 (289)
T ss_pred EEcCCCcEEEEEccccccceeEecC-ccccceEEECCCcCE------EEEecCCCcEEEEECCCCceecchhhcCCceEE
Confidence 8888999999999988877777643 446889999999974 233345999999999998888888788889999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEE
Q 015490 306 FNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTV 371 (406)
Q Consensus 306 ~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~ 371 (406)
++|+|++.++++++.+|.|++||+.+++....+. .|...|.+++|+|++++|++++.|+.|++|+
T Consensus 225 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 225 VAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS-GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc-ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9999999899888889999999999988888886 8889999999999999999999999999996
No 28
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.2e-33 Score=232.14 Aligned_cols=250 Identities=14% Similarity=0.196 Sum_probs=224.8
Q ss_pred cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCE
Q 015490 104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTI 181 (406)
Q Consensus 104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~ 181 (406)
+..+.+.+|.++|.|+++.|.+.++++|+ |++++||++. +++...++.++ ..|..+++|+-..|
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDla--------------tg~LkltltGhi~~vr~vavS~rHpY 207 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLA--------------TGQLKLTLTGHIETVRGVAVSKRHPY 207 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcc--------------cCeEEEeecchhheeeeeeecccCce
Confidence 44567889999999999999999999997 9999998876 44455556655 78999999999999
Q ss_pred EEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEE
Q 015490 182 FAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFS 261 (406)
Q Consensus 182 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 261 (406)
+++++.|+.|+.||++..+.++.+.+|-..|.+++.+|.-..|++++.|.++++||+++...+..+.+| ...|..+.+.
T Consensus 208 lFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH-~~~V~~V~~~ 286 (460)
T KOG0285|consen 208 LFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGH-TNPVASVMCQ 286 (460)
T ss_pred EEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCC-CCcceeEEee
Confidence 999999999999999999999999999999999999999999999999999999999999999999876 4567889898
Q ss_pred cCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecc
Q 015490 262 PLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKA 341 (406)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 341 (406)
|.... +.+++.|++|++||++.++...++..|...+.+++.+|....+|+++.|. |+-|++..+..+..+. +
T Consensus 287 ~~dpq------vit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nls-g 358 (460)
T KOG0285|consen 287 PTDPQ------VITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLS-G 358 (460)
T ss_pred cCCCc------eEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccc-c
Confidence 87775 56788999999999999999999999999999999999999999988775 9999999999988875 9
Q ss_pred cccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490 342 HLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK 377 (406)
Q Consensus 342 ~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~ 377 (406)
|+..|++++...|| ++++|+.+|.+.+||.+++-.
T Consensus 359 h~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 359 HNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHN 393 (460)
T ss_pred ccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcc
Confidence 99999999998776 688999999999999998765
No 29
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=2.1e-32 Score=257.27 Aligned_cols=326 Identities=15% Similarity=0.210 Sum_probs=248.5
Q ss_pred CCccceeeCCeeeeeecccccccccccCCCCCCCCCCchhhhccCCCcccccccccCCCCCcEEEEEcCCCCCCCCcCcc
Q 015490 9 ESHNLQKYGVPLYGAGWVPYDQVIRSTHKPPKQQDDDDKEEDQHGSKDEAVADKSDDIRRNYYVVLAGGGGAGNSGIRNA 88 (406)
Q Consensus 9 ~~~~~~~~~~p~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ggg~~~~g~~~~ 88 (406)
.|+++.+.+.+||+++-.| +...++++|.+.++..++.+.
T Consensus 5 kp~wv~H~~~~IfSIdv~p----------------------------------------dg~~~aTgGq~~d~~~~iW~~ 44 (942)
T KOG0973|consen 5 KPTWVNHNEKSIFSIDVHP----------------------------------------DGVKFATGGQVLDGGIVIWSQ 44 (942)
T ss_pred cccccccCCeeEEEEEecC----------------------------------------CceeEecCCccccccceeecc
Confidence 5889999999999999995 333333333223333333333
Q ss_pred EEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceee----cceeccceeeec
Q 015490 89 VLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRR----LGVKISEKVLSQ 163 (406)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~ 163 (406)
-.+..-..+.+...+..+.+...|.+.|.|+.|+|||++||+|+ |+.+.||............ ......-+....
T Consensus 45 ~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~ 124 (942)
T KOG0973|consen 45 DPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSI 124 (942)
T ss_pred ccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEE
Confidence 33332222222224678889999999999999999999999999 6667777766311110000 000012334444
Q ss_pred cccc-CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCe
Q 015490 164 LENV-GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSA 242 (406)
Q Consensus 164 ~~~~-~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~ 242 (406)
+.+| ..|..++|+|++.+|++++.|++|.||+..+.+.+..+.+|++.|..+.|.|-|++|++-+.|++|++|+..+-.
T Consensus 125 l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~ 204 (942)
T KOG0973|consen 125 LRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWG 204 (942)
T ss_pred EecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccce
Confidence 5555 889999999999999999999999999999999999999999999999999999999999999999999987766
Q ss_pred eeeecccCC-----cceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcC-----CC
Q 015490 243 VATPLAKEN-----DELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSA-----DG 312 (406)
Q Consensus 243 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp-----~~ 312 (406)
..+.+..+. ...+..+.|+|+|.+ +....+..+....+.+.+..+++.-..+.+|..++.++.|+| ..
T Consensus 205 i~k~It~pf~~~~~~T~f~RlSWSPDG~~--las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~ 282 (942)
T KOG0973|consen 205 IEKSITKPFEESPLTTFFLRLSWSPDGHH--LASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNN 282 (942)
T ss_pred eeEeeccchhhCCCcceeeecccCCCcCe--ecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhcccc
Confidence 666554432 345788999999996 222233345566899999999999999999999999999998 11
Q ss_pred C------------EEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490 313 K------------LLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKK 376 (406)
Q Consensus 313 ~------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~ 376 (406)
+ .+|+|+.|++|.||.....+++.....-....|..++|+|||..|+.+|.||+|.+..++..+
T Consensus 283 ~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 283 KNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred ccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 2 678999999999999988888877765567789999999999999999999999999998644
No 30
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2e-33 Score=242.03 Aligned_cols=259 Identities=14% Similarity=0.212 Sum_probs=219.2
Q ss_pred ccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc
Q 015490 87 NAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE 165 (406)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (406)
..+.++.+-.+ ...++++.+|..+|..++|+++|..+++++ |..+++|+.+ ++++...+.
T Consensus 237 ~~vklW~vy~~-----~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtE--------------TG~~~~~f~ 297 (503)
T KOG0282|consen 237 GLVKLWNVYDD-----RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTE--------------TGQVLSRFH 297 (503)
T ss_pred ceEEEEEEecC-----cceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccc--------------cceEEEEEe
Confidence 34555554443 268999999999999999999999999887 9999997765 455555666
Q ss_pred ccCcEEEEEECCCC-CEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeee
Q 015490 166 NVGQQLALTFDSEG-TIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVA 244 (406)
Q Consensus 166 ~~~~v~~~~~s~~g-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~ 244 (406)
....++|+.|.||+ +.|++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|++++++++|++++||+.+.+..+
T Consensus 298 ~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~i 377 (503)
T KOG0282|consen 298 LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPI 377 (503)
T ss_pred cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccc
Confidence 66788999999998 89999999999999999999999888888889999999999999999999999999999988877
Q ss_pred eecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc---eEEEEeeecC--CCeEEEEEcCCCCEEEEEe
Q 015490 245 TPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW---KRIRTKQVVR--EPVSSFNVSADGKLLAVGT 319 (406)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~ 319 (406)
..+.........++..+|+++ +.+.-+.+..|.++.+... ...+.+.+|. +.-..+.|||||++|++|+
T Consensus 378 k~i~~~~~hsmP~~~~~P~~~------~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGd 451 (503)
T KOG0282|consen 378 KNIADPEMHTMPCLTLHPNGK------WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGD 451 (503)
T ss_pred hhhcchhhccCcceecCCCCC------eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeec
Confidence 766655555677899999998 3556678899999986532 2234455663 5567899999999999999
Q ss_pred CCCcEEEEECCCceEEEEeecccccceEEEEEcCC-CCeEEEEECCCcEEEEE
Q 015490 320 ASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYD-SRALVSASMDSSVRVTV 371 (406)
Q Consensus 320 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~s~s~dg~i~iw~ 371 (406)
.||.+.+||.++.+.+..+. .|.+++..+.|+|. ...+|||+.||.|++|+
T Consensus 452 sdG~v~~wdwkt~kl~~~lk-ah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 452 SDGKVNFWDWKTTKLVSKLK-AHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCccEEEeechhhhhhhccc-cCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 99999999999999999996 89999999999996 46789999999999996
No 31
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.7e-32 Score=245.24 Aligned_cols=285 Identities=15% Similarity=0.183 Sum_probs=235.6
Q ss_pred ccccccccCCCCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCC
Q 015490 57 EAVADKSDDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNS 135 (406)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~ 135 (406)
+.+....+-.+.+++++++...+ .+.++ +..+ .....+.||++.|.+++...+|.+|++++ |++
T Consensus 324 dEI~Dm~~lG~e~~~laVATNs~--------~lr~y--~~~~-----~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~s 388 (775)
T KOG0319|consen 324 DEILDMKFLGPEESHLAVATNSP--------ELRLY--TLPT-----SYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKS 388 (775)
T ss_pred hhheeeeecCCccceEEEEeCCC--------ceEEE--ecCC-----CceEEEeCchhheeeeeecccCcEEEEecCCce
Confidence 45666677777888888875433 23444 3333 23347899999999999777888888888 999
Q ss_pred eEEEEEecccccceeecceeccceeeecc-cccCcEEEEEECCCC-CEEEEeeCCCeEEEEeCCCcce-----E----ee
Q 015490 136 CRLFEWDEVENTEIRRLGVKISEKVLSQL-ENVGQQLALTFDSEG-TIFAAGSENGNLRVFKWPSLEI-----I----LN 204 (406)
Q Consensus 136 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g-~~l~~~~~dg~i~vwd~~~~~~-----~----~~ 204 (406)
+++|.++..... ..++... .|...|.+++++..+ .+|++++.|+++++|++...+. . ..
T Consensus 389 vilWr~~~~~~~----------~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t 458 (775)
T KOG0319|consen 389 VILWRLNNNCSK----------SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYT 458 (775)
T ss_pred EEEEEecCCcch----------hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHH
Confidence 999998433221 1122222 345889999998766 7899999999999999975221 1 12
Q ss_pred eeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEE
Q 015490 205 ESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVT 284 (406)
Q Consensus 205 ~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~ 284 (406)
...|...|++++.+|+.+++++||.|++.+||+++..+....+.+|. ..+.++.|+|..+ ++++++.|++|++
T Consensus 459 ~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~-RGvw~V~Fs~~dq------~laT~SgD~TvKI 531 (775)
T KOG0319|consen 459 ERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHT-RGVWCVSFSKNDQ------LLATCSGDKTVKI 531 (775)
T ss_pred HHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCc-cceEEEEeccccc------eeEeccCCceEEE
Confidence 23566799999999999999999999999999999988889988765 4588999999987 5788899999999
Q ss_pred EeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECC
Q 015490 285 WNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMD 364 (406)
Q Consensus 285 ~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d 364 (406)
|.+.+..+++++.+|...|..+.|-.+|+.|++++.||-+++|+++++.++.++. .|+..|++++.+|.+.+++||+.|
T Consensus 532 W~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD-~H~DrvWaL~~~~~~~~~~tgg~D 610 (775)
T KOG0319|consen 532 WSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD-AHNDRVWALSVSPLLDMFVTGGGD 610 (775)
T ss_pred EEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh-hccceeEEEeecCccceeEecCCC
Confidence 9999999999999999999999999999999999999999999999999999997 999999999999999999999999
Q ss_pred CcEEEEEecC
Q 015490 365 SSVRVTVIED 374 (406)
Q Consensus 365 g~i~iw~~~~ 374 (406)
|.|.+|.=.+
T Consensus 611 g~i~~wkD~T 620 (775)
T KOG0319|consen 611 GRIIFWKDVT 620 (775)
T ss_pred eEEEEeecCc
Confidence 9999996443
No 32
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=4.6e-33 Score=220.63 Aligned_cols=251 Identities=16% Similarity=0.235 Sum_probs=217.0
Q ss_pred cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEE
Q 015490 104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIF 182 (406)
Q Consensus 104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 182 (406)
.-+.++.+|.+.|.+...+.+....++++ |-+.++|+ .. +...+..+.|..-|..++|+.|.++|
T Consensus 50 dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~--a~------------tgdelhsf~hkhivk~~af~~ds~~l 115 (334)
T KOG0278|consen 50 DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD--AV------------TGDELHSFEHKHIVKAVAFSQDSNYL 115 (334)
T ss_pred CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh--hh------------hhhhhhhhhhhheeeeEEecccchhh
Confidence 46789999999999999998877766665 77778865 33 33445556777889999999999999
Q ss_pred EEeeCCCeEEEEeCCCcc-eEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEE
Q 015490 183 AAGSENGNLRVFKWPSLE-IILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFS 261 (406)
Q Consensus 183 ~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 261 (406)
++|+.+..++|||++..+ ....+.+|.+.|..+.|....+.|+++++|++||+||.+++..++.+... ..++++.++
T Consensus 116 ltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~--s~VtSlEvs 193 (334)
T KOG0278|consen 116 LTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN--SPVTSLEVS 193 (334)
T ss_pred hccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecC--CCCcceeec
Confidence 999999999999997655 45567788889999999998899999999999999999999999988754 458899999
Q ss_pred cCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecc
Q 015490 262 PLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKA 341 (406)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 341 (406)
++++. ++ ....+.|.+||..+...++.+... ..|.+.+++|+...+++|++|..++.||..++..+..+..+
T Consensus 194 ~dG~i-----lT--ia~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkg 265 (334)
T KOG0278|consen 194 QDGRI-----LT--IAYGSSVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKG 265 (334)
T ss_pred cCCCE-----EE--EecCceeEEeccccccceeeccCc-cccccccccCCCceEEecCcceEEEEEeccCCceeeecccC
Confidence 99984 22 235678999999999999888765 56899999999999999999999999999999999887569
Q ss_pred cccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCC
Q 015490 342 HLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKS 378 (406)
Q Consensus 342 ~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~ 378 (406)
|.++|.++.|+|||...++||.||+|++|.+..++.-
T Consensus 266 h~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 266 HFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 9999999999999999999999999999999877653
No 33
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.1e-32 Score=221.37 Aligned_cols=257 Identities=14% Similarity=0.179 Sum_probs=214.3
Q ss_pred ccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecc-cccCcEEEEEECCCCC
Q 015490 103 DQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQL-ENVGQQLALTFDSEGT 180 (406)
Q Consensus 103 ~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~ 180 (406)
..++..+.+|++.|+.+.|+|+|.++++|+ |..+.+|+..... +....+ .|.+.|..+.|.+|+.
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc-------------eN~~~lkgHsgAVM~l~~~~d~s 103 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC-------------ENFWVLKGHSGAVMELHGMRDGS 103 (338)
T ss_pred cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc-------------cceeeeccccceeEeeeeccCCC
Confidence 357788999999999999999999999998 8888887754321 111122 3558999999999999
Q ss_pred EEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCC-EEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEE
Q 015490 181 IFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGK-FLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCR 259 (406)
Q Consensus 181 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 259 (406)
.+++++.|.+++.||+++|+...+...|...|+.+.-+.-|. ++.+++.|+++++||+++...++.+.. ...++++.
T Consensus 104 ~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~--kyqltAv~ 181 (338)
T KOG0265|consen 104 HILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN--KYQLTAVG 181 (338)
T ss_pred EEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc--ceeEEEEE
Confidence 999999999999999999999999999999999888554444 677888999999999999888887753 34588999
Q ss_pred EEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc----eEE
Q 015490 260 FSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSL----QVR 335 (406)
Q Consensus 260 ~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~----~~~ 335 (406)
|...+.+ +.+++-|+.|++||++.......+.+|..+|+.+..+|+|.++.+-+.|.++++||++.. +++
T Consensus 182 f~d~s~q------v~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v 255 (338)
T KOG0265|consen 182 FKDTSDQ------VISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCV 255 (338)
T ss_pred ecccccc------eeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceE
Confidence 9998886 556788999999999999999999999999999999999999999999999999999753 334
Q ss_pred EEeeccc--ccc--eEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490 336 TAVKKAH--LGI--VTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL 381 (406)
Q Consensus 336 ~~~~~~~--~~~--v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~ 381 (406)
..+. +| .-. ...++|+|+++.+.+|+.|..+++||......+-.+
T Consensus 256 ~if~-g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl 304 (338)
T KOG0265|consen 256 KIFQ-GHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL 304 (338)
T ss_pred EEee-cchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc
Confidence 4443 43 222 457899999999999999999999999876554443
No 34
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-32 Score=244.42 Aligned_cols=255 Identities=16% Similarity=0.246 Sum_probs=225.0
Q ss_pred eEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccc-cCcEEEEEECCCCCEEEE
Q 015490 107 AELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN-VGQQLALTFDSEGTIFAA 184 (406)
Q Consensus 107 ~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~ 184 (406)
+++..|++.|-++.|+|...+++++- .|++.||+++.++ .++.++- .-+|+++.|-+..+++++
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt--------------mVksfeV~~~PvRa~kfiaRknWiv~ 72 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT--------------MVKSFEVSEVPVRAAKFIARKNWIVT 72 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccce--------------eeeeeeecccchhhheeeeccceEEE
Confidence 34556899999999999999999886 9999999888543 2223333 367889999999999999
Q ss_pred eeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeee-eecccCCcceEEEEEEEcC
Q 015490 185 GSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVA-TPLAKENDELFASCRFSPL 263 (406)
Q Consensus 185 ~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~ 263 (406)
|+.|..|+||+.++++.+..+..|.+-|++++.+|...+++++|+|-+|++||.+..-.. +.+. .|...+.+++|+|.
T Consensus 73 GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfe-GH~HyVMqv~fnPk 151 (794)
T KOG0276|consen 73 GSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFE-GHEHYVMQVAFNPK 151 (794)
T ss_pred ecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEc-CcceEEEEEEecCC
Confidence 999999999999999999999999999999999999999999999999999999876544 4555 45678999999999
Q ss_pred CCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCceEEEEeecc
Q 015490 264 NNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADG--KLLAVGTASGDISIIDSSSLQVRTAVKKA 341 (406)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 341 (406)
... ..++++-|++|++|.+.+..+..++.+|...|.|+++-+.| .+|++|+.|.+++|||.++..++.++. +
T Consensus 152 D~n-----tFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe-G 225 (794)
T KOG0276|consen 152 DPN-----TFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE-G 225 (794)
T ss_pred Ccc-----ceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhh-c
Confidence 886 67888999999999999999999999999999999998844 699999999999999999999999996 9
Q ss_pred cccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCch
Q 015490 342 HLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLN 382 (406)
Q Consensus 342 ~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~ 382 (406)
|...|..+.|+|.-..++|||.||+++||+-.+-+....++
T Consensus 226 Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn 266 (794)
T KOG0276|consen 226 HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLN 266 (794)
T ss_pred ccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhh
Confidence 99999999999999999999999999999998876654443
No 35
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-32 Score=214.58 Aligned_cols=255 Identities=13% Similarity=0.148 Sum_probs=216.3
Q ss_pred ccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCC
Q 015490 103 DQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGT 180 (406)
Q Consensus 103 ~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~ 180 (406)
...+..+..|+++|.++.|+-||++.++++ |.++++|+.- ...+++++.+| ..|..++.+.|..
T Consensus 7 tkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~--------------rg~liktYsghG~EVlD~~~s~Dns 72 (307)
T KOG0316|consen 7 TKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPL--------------RGALIKTYSGHGHEVLDAALSSDNS 72 (307)
T ss_pred chhceeecccccceEEEEEccCCCEEEEcCCCceEEeeccc--------------ccceeeeecCCCceeeecccccccc
Confidence 346678899999999999999999988876 9999997643 44556666666 6799999999999
Q ss_pred EEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCC--eeeeecccCCcceEEEE
Q 015490 181 IFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASS--AVATPLAKENDELFASC 258 (406)
Q Consensus 181 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~ 258 (406)
.|++|+.|..+.+||+++|+..+.+.+|...|+.+.|+.+...+++|+-|.++++||.++. ++++.+... ...+.++
T Consensus 73 kf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea-~D~V~Si 151 (307)
T KOG0316|consen 73 KFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEA-KDGVSSI 151 (307)
T ss_pred ccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhh-cCceeEE
Confidence 9999999999999999999999999999999999999999999999999999999999864 455555433 3346677
Q ss_pred EEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEe
Q 015490 259 RFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAV 338 (406)
Q Consensus 259 ~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 338 (406)
..+.. .+..++-||+++.||++.++.....-+ .+|++++|++|+++.+.++.|+++++.|-.+++.+..+
T Consensus 152 ~v~~h--------eIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sY 221 (307)
T KOG0316|consen 152 DVAEH--------EIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSY 221 (307)
T ss_pred Eeccc--------EEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHh
Confidence 66543 356778899999999999987766554 57999999999999999999999999999999999998
Q ss_pred ecccccceE--EEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCchH
Q 015490 339 KKAHLGIVT--ALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLNL 383 (406)
Q Consensus 339 ~~~~~~~v~--~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 383 (406)
+ +|...-. .++++....++++||.||.|++||+.+.+.+.+++.
T Consensus 222 k-Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~ 267 (307)
T KOG0316|consen 222 K-GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSV 267 (307)
T ss_pred c-ccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeecc
Confidence 6 8876543 556777778999999999999999999888776654
No 36
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.5e-31 Score=209.26 Aligned_cols=238 Identities=17% Similarity=0.247 Sum_probs=201.2
Q ss_pred cEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccc
Q 015490 88 AVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN 166 (406)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (406)
.+.++.++... +.|+.++.+|++.|+++.|..+|+++++|+ |++++||++.. ..+.+.+++
T Consensus 62 hvRlyD~~S~n----p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~--------------~~~qR~~~~ 123 (311)
T KOG0315|consen 62 HVRLYDLNSNN----PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS--------------LSCQRNYQH 123 (311)
T ss_pred eeEEEEccCCC----CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccC--------------cccchhccC
Confidence 44555555443 469999999999999999999999999999 99999998773 344556677
Q ss_pred cCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCC-ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCe---
Q 015490 167 VGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHA-SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSA--- 242 (406)
Q Consensus 167 ~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~--- 242 (406)
..+|+++..+|+...|++|..+|.|++||+.+..+...+..... .|.+++..|||++++.+...|+.++|++-...
T Consensus 124 ~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s 203 (311)
T KOG0315|consen 124 NSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTAS 203 (311)
T ss_pred CCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccc
Confidence 89999999999999999999999999999988877666555444 89999999999999999999999999987643
Q ss_pred ---eeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc-eEEEEeeecCCCeEEEEEcCCCCEEEEE
Q 015490 243 ---VATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW-KRIRTKQVVREPVSSFNVSADGKLLAVG 318 (406)
Q Consensus 243 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~ 318 (406)
++.+++.+ ...+..+.++|++++ +++++.|.++++|+..+. +....+++|...+...+||.||+||++|
T Consensus 204 ~l~P~~k~~ah-~~~il~C~lSPd~k~------lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTa 276 (311)
T KOG0315|consen 204 ELEPVHKFQAH-NGHILRCLLSPDVKY------LATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTA 276 (311)
T ss_pred cceEhhheecc-cceEEEEEECCCCcE------EEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEec
Confidence 33444444 445778999999994 677788999999999987 6677788899999999999999999999
Q ss_pred eCCCcEEEEECCCceEEEEeecccccceEEEEE
Q 015490 319 TASGDISIIDSSSLQVRTAVKKAHLGIVTALAF 351 (406)
Q Consensus 319 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 351 (406)
+.|+.+++||+..++.++... +|.....+++.
T Consensus 277 ssd~~~rlW~~~~~k~v~qy~-gh~K~~vc~~l 308 (311)
T KOG0315|consen 277 SSDHTARLWDLSAGKEVRQYQ-GHHKAAVCVAL 308 (311)
T ss_pred CCCCceeecccccCceeeecC-CcccccEEEEe
Confidence 999999999999999999986 77777666664
No 37
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4.4e-31 Score=232.80 Aligned_cols=254 Identities=24% Similarity=0.342 Sum_probs=215.7
Q ss_pred eeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecc-cccCcEEEEEECCCCCEEE
Q 015490 106 VAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQL-ENVGQQLALTFDSEGTIFA 183 (406)
Q Consensus 106 ~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~ 183 (406)
+.++.+|.++|.+++|+|+++++++++ ++.+.+|+++... ....+ .+...+..+.|++++++++
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~--------------~~~~~~~~~~~i~~~~~~~~~~~l~ 67 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE--------------LLRTLKGHTGPVRDVAASADGTYLA 67 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC--------------cEEEEecCCcceeEEEECCCCCEEE
Confidence 345779999999999999999999987 8888888776421 11112 2446778999999999999
Q ss_pred EeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcC
Q 015490 184 AGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPL 263 (406)
Q Consensus 184 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (406)
+++.+|.|++|++.+++....+..+...+.++.|+++++++++++.++.+++||+++++....+.. +...+.++.|+|+
T Consensus 68 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~ 146 (289)
T cd00200 68 SGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG-HTDWVNSVAFSPD 146 (289)
T ss_pred EEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc-CCCcEEEEEEcCc
Confidence 999999999999998887877877777999999999988888888899999999998888877764 3456889999998
Q ss_pred CCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccc
Q 015490 264 NNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHL 343 (406)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 343 (406)
+. +++++..++.|++||+++++....+..+...+.+++|+|+++.+++++.++.|++||+++++....+. .|.
T Consensus 147 ~~------~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~ 219 (289)
T cd00200 147 GT------FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR-GHE 219 (289)
T ss_pred CC------EEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchh-hcC
Confidence 65 34455568999999999988888888888899999999999999999999999999999988888874 688
Q ss_pred cceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490 344 GIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL 381 (406)
Q Consensus 344 ~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~ 381 (406)
..+.++.|+|++.++++++.|+.|++|++.+++.+..+
T Consensus 220 ~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~ 257 (289)
T cd00200 220 NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL 257 (289)
T ss_pred CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEc
Confidence 89999999999888888888999999999887665444
No 38
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-30 Score=206.73 Aligned_cols=247 Identities=16% Similarity=0.246 Sum_probs=210.1
Q ss_pred eEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCEEEE
Q 015490 107 AELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAA 184 (406)
Q Consensus 107 ~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~ 184 (406)
..++||+.+++-+.++.+|.+|++++ |....+|.-. +++.+.++.+| +.|.|+..+.+.+++++
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~--------------nGerlGty~GHtGavW~~Did~~s~~liT 69 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSL--------------NGERLGTYDGHTGAVWCCDIDWDSKHLIT 69 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEec--------------CCceeeeecCCCceEEEEEecCCcceeee
Confidence 35789999999999999999999998 9999998543 44455566665 89999999999999999
Q ss_pred eeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeC-----CCCEEEEEcC-------CCeeeeecccCCc
Q 015490 185 GSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGN-----RGPGRVWDLA-------SSAVATPLAKEND 252 (406)
Q Consensus 185 ~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~-----d~~i~iwd~~-------~~~~~~~~~~~~~ 252 (406)
|+.|.++++||+++|+++..+.. ..+|..+.|+++|++++.+.+ .+.|.++|++ +.++...+..+.
T Consensus 70 GSAD~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~- 147 (327)
T KOG0643|consen 70 GSADQTAKLWDVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD- 147 (327)
T ss_pred ccccceeEEEEcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc-
Confidence 99999999999999999987653 457999999999998887754 4679999998 344566666554
Q ss_pred ceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce-EEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 015490 253 ELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK-RIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSS 331 (406)
Q Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~ 331 (406)
..++.+-|.|.++ .+.++.++|.|..||.++++ .+.....|...|+.+++++|..++++++.|.+-++||..+
T Consensus 148 skit~a~Wg~l~~------~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 148 SKITSALWGPLGE------TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT 221 (327)
T ss_pred cceeeeeecccCC------EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccc
Confidence 5678899999998 46678899999999999975 4555678889999999999999999999999999999988
Q ss_pred ceEEEEee------------------------------------------------------cccccceEEEEEcCCCCe
Q 015490 332 LQVRTAVK------------------------------------------------------KAHLGIVTALAFSYDSRA 357 (406)
Q Consensus 332 ~~~~~~~~------------------------------------------------------~~~~~~v~~~~~sp~~~~ 357 (406)
.+.+.++. .+|-++|++++|+|+|+.
T Consensus 222 l~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGks 301 (327)
T KOG0643|consen 222 LEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKS 301 (327)
T ss_pred eeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcc
Confidence 77666554 689999999999999999
Q ss_pred EEEEECCCcEEEEEecCC
Q 015490 358 LVSASMDSSVRVTVIEDK 375 (406)
Q Consensus 358 l~s~s~dg~i~iw~~~~~ 375 (406)
.++|+.||.|++..++..
T Consensus 302 YsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 302 YSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred cccCCCCceEEEEEeccc
Confidence 999999999999977654
No 39
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=3.5e-30 Score=256.97 Aligned_cols=254 Identities=14% Similarity=0.177 Sum_probs=207.8
Q ss_pred EecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECC-CCCEEEEee
Q 015490 109 LRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDS-EGTIFAAGS 186 (406)
Q Consensus 109 ~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~ 186 (406)
+..|.+.|.+++|+|+++++++++ |+.++||+........ .. .......+.++..+.+++|++ ++.+|++++
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~-~~-----~~~~~~~~~~~~~v~~l~~~~~~~~~las~~ 552 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDG-RD-----IHYPVVELASRSKLSGICWNSYIKSQVASSN 552 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccc-cc-----cccceEEecccCceeeEEeccCCCCEEEEEe
Confidence 456899999999999999999988 8899998764311000 00 001122334567889999987 478999999
Q ss_pred CCCeEEEEeCCCcceEeeeeccCCceeEEEEcc-CCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCC
Q 015490 187 ENGNLRVFKWPSLEIILNESEAHASVKDLSFSP-DGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNN 265 (406)
Q Consensus 187 ~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (406)
.||+|++||+.+++.+..+.+|...|++++|+| ++.+|++++.|++|++||++++.....+..+ ..+.++.|++...
T Consensus 553 ~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~--~~v~~v~~~~~~g 630 (793)
T PLN00181 553 FEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK--ANICCVQFPSESG 630 (793)
T ss_pred CCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC--CCeEEEEEeCCCC
Confidence 999999999999998888888888999999997 7889999999999999999998888777643 3577899976544
Q ss_pred CceEEEEEEEcCCCcEEEEEeCCCce-EEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc------eEEEEe
Q 015490 266 EDYVLYIAAITDRGASIVTWNTTTWK-RIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSL------QVRTAV 338 (406)
Q Consensus 266 ~~~~l~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~------~~~~~~ 338 (406)
. .+++++.|+.|++||+++.+ .+..+.+|...|.++.|. ++.+|++++.|++|++||+... ..+..+
T Consensus 631 ~-----~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~ 704 (793)
T PLN00181 631 R-----SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF 704 (793)
T ss_pred C-----EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE
Confidence 3 46677899999999998765 466778898999999997 6789999999999999999743 456677
Q ss_pred ecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490 339 KKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK 377 (406)
Q Consensus 339 ~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~ 377 (406)
. +|...+..+.|+|++.+|++|+.|+.|++|+...+..
T Consensus 705 ~-gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~ 742 (793)
T PLN00181 705 M-GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMP 742 (793)
T ss_pred c-CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCc
Confidence 5 8999999999999999999999999999999876543
No 40
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-29 Score=220.00 Aligned_cols=265 Identities=15% Similarity=0.166 Sum_probs=216.0
Q ss_pred EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-cc
Q 015490 90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NV 167 (406)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 167 (406)
.++..+.+. +.....+.+|..+++-..|+|.|.++++|. .+.+|||++...+...... ++ -.
T Consensus 40 sv~ir~i~~----~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKne------------f~v~a 103 (603)
T KOG0318|consen 40 SVIIRNIDN----PASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNE------------FQVLA 103 (603)
T ss_pred EEEEEECCC----ccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeee------------eeecc
Confidence 444444443 346778999999999999999999999886 8888998876432111111 11 23
Q ss_pred CcEEEEEECCCCCEEEEeeC--CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCC-EEEEEeCCCCEEEEEcCCCeee
Q 015490 168 GQQLALTFDSEGTIFAAGSE--NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGK-FLVSLGNRGPGRVWDLASSAVA 244 (406)
Q Consensus 168 ~~v~~~~~s~~g~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~~~~ 244 (406)
++|..++|+.|++.+++.++ +.-.+++-+++|..+..+.+|...|++++|-|... +++++++|++|.+|+=.--+..
T Consensus 104 G~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk 183 (603)
T KOG0318|consen 104 GPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFK 183 (603)
T ss_pred cccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeee
Confidence 78999999999988877654 33445555557888889999999999999998655 7999999999999986655555
Q ss_pred eecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEee---ecCCCeEEEEEcCCCCEEEEEeCC
Q 015490 245 TPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQ---VVREPVSSFNVSADGKLLAVGTAS 321 (406)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~---~~~~~i~~~~~sp~~~~l~~~~~d 321 (406)
..+.. |...+.+++|+|+|.. .++.+.|+++.+||-.+++.+..+. .|.+.|.+++|+||++.+++++.|
T Consensus 184 ~s~r~-HskFV~~VRysPDG~~------Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD 256 (603)
T KOG0318|consen 184 SSFRE-HSKFVNCVRYSPDGSR------FATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD 256 (603)
T ss_pred ecccc-cccceeeEEECCCCCe------EEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC
Confidence 55554 4558999999999984 5666889999999999999999998 899999999999999999999999
Q ss_pred CcEEEEECCCceEEEEee------------------------------------------cccccceEEEEEcCCCCeEE
Q 015490 322 GDISIIDSSSLQVRTAVK------------------------------------------KAHLGIVTALAFSYDSRALV 359 (406)
Q Consensus 322 g~i~i~d~~~~~~~~~~~------------------------------------------~~~~~~v~~~~~sp~~~~l~ 359 (406)
.+++|||+.+.+.+.++. .+|...|+++..+||+++|+
T Consensus 257 kt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~ 336 (603)
T KOG0318|consen 257 KTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY 336 (603)
T ss_pred ceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEE
Confidence 999999998776665543 58999999999999999999
Q ss_pred EEECCCcEEEEEecCCcC
Q 015490 360 SASMDSSVRVTVIEDKKK 377 (406)
Q Consensus 360 s~s~dg~i~iw~~~~~~~ 377 (406)
+|+.||.|.-|+..++..
T Consensus 337 SgsyDG~I~~W~~~~g~~ 354 (603)
T KOG0318|consen 337 SGSYDGHINSWDSGSGTS 354 (603)
T ss_pred eeccCceEEEEecCCccc
Confidence 999999999999998765
No 41
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=6.8e-30 Score=207.83 Aligned_cols=256 Identities=15% Similarity=0.219 Sum_probs=207.1
Q ss_pred cEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccc
Q 015490 88 AVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN 166 (406)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (406)
.+.++....+. +....+++|.+.|+.+.|.+|+..+++++ |.+++.|+ ..+++. .+.++.
T Consensus 70 ~I~LWnv~gdc-----eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD--~~tG~~------------~rk~k~ 130 (338)
T KOG0265|consen 70 AIVLWNVYGDC-----ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD--AETGKR------------IRKHKG 130 (338)
T ss_pred eEEEEeccccc-----cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe--ccccee------------eehhcc
Confidence 44555544433 45667889999999999999999999987 77766655 444443 333444
Q ss_pred c-CcEEEEEECCCC-CEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeee
Q 015490 167 V-GQQLALTFDSEG-TIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVA 244 (406)
Q Consensus 167 ~-~~v~~~~~s~~g-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~ 244 (406)
+ .-|+.+.-+.-| .++.+|+.|+++++||+++...+..+. ...+++++.|..++..+.+|+-|+.|++||++.+...
T Consensus 131 h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~ 209 (338)
T KOG0265|consen 131 HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGL 209 (338)
T ss_pred ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcce
Confidence 4 567777744444 577889999999999999887775543 3447999999999999999999999999999999999
Q ss_pred eecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc----eEEEEeeecC----CCeEEEEEcCCCCEEE
Q 015490 245 TPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW----KRIRTKQVVR----EPVSSFNVSADGKLLA 316 (406)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~----~~~~~~~~~~----~~i~~~~~sp~~~~l~ 316 (406)
..+.++ ...|+.+..++++.. +.+.+.|.++++||.+-. +++..+.+|. .....++|+|+++.+.
T Consensus 210 ~~lsGh-~DtIt~lsls~~gs~------llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ 282 (338)
T KOG0265|consen 210 YTLSGH-ADTITGLSLSRYGSF------LLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKIT 282 (338)
T ss_pred EEeecc-cCceeeEEeccCCCc------cccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccc
Confidence 988876 456889999999984 556678999999999743 4566676653 3456789999999999
Q ss_pred EEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEE
Q 015490 317 VGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTV 371 (406)
Q Consensus 317 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~ 371 (406)
.|+.|..+++||......+..+. +|.+.|.+++|+|....|.+++.|.+|++=.
T Consensus 283 ags~dr~vyvwd~~~r~~lyklp-Gh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 283 AGSADRFVYVWDTTSRRILYKLP-GHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred cccccceEEEeecccccEEEEcC-CcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 99999999999999889999996 9999999999999999999999999998633
No 42
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=8.5e-31 Score=209.07 Aligned_cols=256 Identities=16% Similarity=0.197 Sum_probs=215.5
Q ss_pred eEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECC-CCCEEEE
Q 015490 107 AELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDS-EGTIFAA 184 (406)
Q Consensus 107 ~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~ 184 (406)
+.+++|...|.+++|+.+|..|++++ ++++.+|+++... ... ......|++.|-.++|+| ...+|++
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r--~~~---------~~~~~gh~~svdql~w~~~~~d~~at 82 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR--FRK---------ELVYRGHTDSVDQLCWDPKHPDLFAT 82 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchh--hhh---------hhcccCCCcchhhheeCCCCCcceEE
Confidence 56789999999999999999999998 9999999988641 111 111123556888999988 4589999
Q ss_pred eeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCC
Q 015490 185 GSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLN 264 (406)
Q Consensus 185 ~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (406)
++.|.+|++||++.+++...+...... .-+.|+|+|.++++++.|..|...|.++.+.....+.. ..+..+.|+-++
T Consensus 83 as~dk~ir~wd~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~--~e~ne~~w~~~n 159 (313)
T KOG1407|consen 83 ASGDKTIRIWDIRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK--FEVNEISWNNSN 159 (313)
T ss_pred ecCCceEEEEEeccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhccc--ceeeeeeecCCC
Confidence 999999999999999998877654444 45889999999999999999999999988877766532 346678888444
Q ss_pred CCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeeccccc
Q 015490 265 NEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLG 344 (406)
Q Consensus 265 ~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 344 (406)
. +|++. .+.|.|.+......+++..++.|.....|+.|+|+|+++|+|+.|..+.+||++..-+++.+. -+.-
T Consensus 160 d----~Fflt--~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is-Rldw 232 (313)
T KOG1407|consen 160 D----LFFLT--NGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS-RLDW 232 (313)
T ss_pred C----EEEEe--cCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec-cccC
Confidence 4 33333 457899999999999999999999999999999999999999999999999999988888886 6899
Q ss_pred ceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCchH
Q 015490 345 IVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLNL 383 (406)
Q Consensus 345 ~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 383 (406)
+|+.+.||.||++||++|.|..|-|=++++|.++-+++.
T Consensus 233 pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~ 271 (313)
T KOG1407|consen 233 PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC 271 (313)
T ss_pred ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec
Confidence 999999999999999999999999999999998776654
No 43
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.98 E-value=4.1e-29 Score=249.34 Aligned_cols=243 Identities=11% Similarity=0.191 Sum_probs=192.0
Q ss_pred eeEEecCCCCceEEEEccC-CCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECC-CCCE
Q 015490 106 VAELRTDSDLPYRMAIHPH-GDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDS-EGTI 181 (406)
Q Consensus 106 ~~~~~~h~~~v~~~~~sp~-~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~-~g~~ 181 (406)
...+.+ ...|.+++|+|. +.+|++++ |+.+++|++.. + +.+..+. |.+.|.+++|+| ++.+
T Consensus 526 ~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~--~------------~~~~~~~~H~~~V~~l~~~p~~~~~ 590 (793)
T PLN00181 526 VVELAS-RSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR--S------------QLVTEMKEHEKRVWSIDYSSADPTL 590 (793)
T ss_pred eEEecc-cCceeeEEeccCCCCEEEEEeCCCeEEEEECCC--C------------eEEEEecCCCCCEEEEEEcCCCCCE
Confidence 344443 467999999875 66777776 88888877652 2 2223333 457899999997 7899
Q ss_pred EEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEc-cCCCEEEEEeCCCCEEEEEcCCCe-eeeecccCCcceEEEEE
Q 015490 182 FAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFS-PDGKFLVSLGNRGPGRVWDLASSA-VATPLAKENDELFASCR 259 (406)
Q Consensus 182 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~ 259 (406)
|++|+.||+|++||++++..+..+.. +..|.++.|+ +++.+|++|+.|+.|++||+++.+ ....+.. +...+.++.
T Consensus 591 L~Sgs~Dg~v~iWd~~~~~~~~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~-h~~~V~~v~ 668 (793)
T PLN00181 591 LASGSDDGSVKLWSINQGVSIGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG-HSKTVSYVR 668 (793)
T ss_pred EEEEcCCCEEEEEECCCCcEEEEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC-CCCCEEEEE
Confidence 99999999999999999888776654 4578999995 578999999999999999998765 3444443 455688999
Q ss_pred EEcCCCCceEEEEEEEcCCCcEEEEEeCCC------ceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCce
Q 015490 260 FSPLNNEDYVLYIAAITDRGASIVTWNTTT------WKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQ 333 (406)
Q Consensus 260 ~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~------~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~ 333 (406)
|. ++. .+++++.|+.|++||++. .+.+..+.+|...+.+++|+|++++|++|+.|+.|++|+.....
T Consensus 669 f~-~~~------~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 669 FV-DSS------TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred Ee-CCC------EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence 97 444 345667899999999974 35678888898899999999999999999999999999987654
Q ss_pred EEEEee------------cccccceEEEEEcCCCCeEEEEECCCcEEEEEe
Q 015490 334 VRTAVK------------KAHLGIVTALAFSYDSRALVSASMDSSVRVTVI 372 (406)
Q Consensus 334 ~~~~~~------------~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~ 372 (406)
++..+. ..|...|.+++|+|++..|++|+.||.|+||++
T Consensus 742 ~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 742 PVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 432221 134567999999999999999999999999996
No 44
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=3.5e-30 Score=236.68 Aligned_cols=275 Identities=15% Similarity=0.206 Sum_probs=228.1
Q ss_pred CCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEeccc
Q 015490 67 RRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVE 145 (406)
Q Consensus 67 ~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~ 145 (406)
|...+++++-..| .+.++.+.... .+.++.+|.++|..++|+|++..+++|+ |..+++|++.
T Consensus 19 P~rPwILtslHsG--------~IQlWDYRM~t------li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk--- 81 (1202)
T KOG0292|consen 19 PKRPWILTSLHSG--------VIQLWDYRMGT------LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK--- 81 (1202)
T ss_pred CCCCEEEEeecCc--------eeeeehhhhhh------HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc---
Confidence 3667777764443 35666655543 7889999999999999999999999998 7888998887
Q ss_pred ccceeecceeccceeeeccccc-CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEE
Q 015490 146 NTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFL 224 (406)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 224 (406)
..+++.++.+| +.|+.+.|++.-.++++++.|.+|+||++.+++++..+.+|..-|.|..|+|....+
T Consensus 82 -----------~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlI 150 (1202)
T KOG0292|consen 82 -----------TRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLI 150 (1202)
T ss_pred -----------cceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceE
Confidence 45566666666 889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCEEEEEcCCCe----------------------------eeeecccCCcceEEEEEEEcCCCCceEEEEEEEc
Q 015490 225 VSLGNRGPGRVWDLASSA----------------------------VATPLAKENDELFASCRFSPLNNEDYVLYIAAIT 276 (406)
Q Consensus 225 ~s~s~d~~i~iwd~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (406)
+++|-|.+|++||+..-+ .++.+...|+..|.-++|+|.-. ++++|
T Consensus 151 VSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp------liVSG 224 (1202)
T KOG0292|consen 151 VSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP------LIVSG 224 (1202)
T ss_pred EEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc------eEEec
Confidence 999999999999984311 11112224566688899999776 67899
Q ss_pred CCCcEEEEEeCCCce--EEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCC
Q 015490 277 DRGASIVTWNTTTWK--RIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYD 354 (406)
Q Consensus 277 ~~~~~i~~~d~~~~~--~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~ 354 (406)
++|..|++|.+..-+ .+.+..+|.+.|+++-|+|...+|++.++|++|+|||+...+.+.++. -..+..+.++-+|.
T Consensus 225 ~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr-rendRFW~laahP~ 303 (1202)
T KOG0292|consen 225 ADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR-RENDRFWILAAHPE 303 (1202)
T ss_pred CCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeee-ccCCeEEEEEecCC
Confidence 999999999987644 356778899999999999999999999999999999999999999986 45577899999999
Q ss_pred CCeEEEEECCCcEEEEEecCCcC
Q 015490 355 SRALVSASMDSSVRVTVIEDKKK 377 (406)
Q Consensus 355 ~~~l~s~s~dg~i~iw~~~~~~~ 377 (406)
.+++++| .|+.+-||.++...+
T Consensus 304 lNLfAAg-HDsGm~VFkleRErp 325 (1202)
T KOG0292|consen 304 LNLFAAG-HDSGMIVFKLERERP 325 (1202)
T ss_pred cceeeee-cCCceEEEEEcccCc
Confidence 9877765 566677888875444
No 45
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1e-30 Score=207.78 Aligned_cols=242 Identities=17% Similarity=0.257 Sum_probs=199.5
Q ss_pred cCCCCceEEEEccCCCeEE--EEecCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECC-CCCEEEEee
Q 015490 111 TDSDLPYRMAIHPHGDGII--CALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDS-EGTIFAAGS 186 (406)
Q Consensus 111 ~h~~~v~~~~~sp~~~~l~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~-~g~~l~~~~ 186 (406)
.-.+.+..++|+++....+ +.+||+++||+... ...++..++ |..+|.++.|++ +++.+++++
T Consensus 58 d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~-------------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsS 124 (311)
T KOG0277|consen 58 DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM-------------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSS 124 (311)
T ss_pred ecccceeEeeecCCCcceEEEEecCceEEEeccCC-------------CCcchhHHHhhhhheEEeccccccceeEEeec
Confidence 3467899999999765433 34599999988332 233444444 458899999998 557788889
Q ss_pred CCCeEEEEeCCCcceEeeeeccCCceeEEEEcc-CCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCC
Q 015490 187 ENGNLRVFKWPSLEIILNESEAHASVKDLSFSP-DGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNN 265 (406)
Q Consensus 187 ~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (406)
.|++|++|+...++.+.++.+|...|...+|+| ..+.++++|.|+++++||++.......+..|. ..+.++.|+....
T Consensus 125 WD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~-~Eil~cdw~ky~~ 203 (311)
T KOG0277|consen 125 WDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHN-SEILCCDWSKYNH 203 (311)
T ss_pred cCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEecc-ceeEeecccccCC
Confidence 999999999999999999999999999999999 56799999999999999998765555566554 5688999999988
Q ss_pred CceEEEEEEEcCCCcEEEEEeCCCc-eEEEEeeecCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCce-EEEEeeccc
Q 015490 266 EDYVLYIAAITDRGASIVTWNTTTW-KRIRTKQVVREPVSSFNVSAD-GKLLAVGTASGDISIIDSSSLQ-VRTAVKKAH 342 (406)
Q Consensus 266 ~~~~l~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~i~~~~~sp~-~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~ 342 (406)
. ++++++.|+.|+.||+++. .++..+.+|...|..++|||. ...|++++.|-+++|||..... .+.+. ..|
T Consensus 204 ~-----vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~-~~H 277 (311)
T KOG0277|consen 204 N-----VLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETV-DHH 277 (311)
T ss_pred c-----EEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhh-hcc
Confidence 6 7889999999999999875 467888999999999999995 4688999999999999998544 34444 378
Q ss_pred ccceEEEEEcC-CCCeEEEEECCCcEEEEEe
Q 015490 343 LGIVTALAFSY-DSRALVSASMDSSVRVTVI 372 (406)
Q Consensus 343 ~~~v~~~~~sp-~~~~l~s~s~dg~i~iw~~ 372 (406)
+.-|..+.|++ ++.++++++.|+.++||+-
T Consensus 278 tEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 278 TEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ceEEeccccccccCceeeecccccceeeecc
Confidence 89999999998 5678999999999999983
No 46
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.98 E-value=1.8e-30 Score=216.40 Aligned_cols=252 Identities=19% Similarity=0.288 Sum_probs=203.8
Q ss_pred ceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCEE
Q 015490 105 PVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIF 182 (406)
Q Consensus 105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l 182 (406)
.+.++..|++.|.+++.+|+.+++++|+ |....| |+..++.. ...+. |...|+++.||.||.+|
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~Afl--W~~~~ge~------------~~eltgHKDSVt~~~FshdgtlL 121 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFL--WDISTGEF------------AGELTGHKDSVTCCSFSHDGTLL 121 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEE--EEccCCcc------------eeEecCCCCceEEEEEccCceEE
Confidence 6778999999999999999888888887 555455 55443332 22233 55889999999999999
Q ss_pred EEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEc
Q 015490 183 AAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSP 262 (406)
Q Consensus 183 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (406)
|+|..+|.|+||+..++.....+...-..|.-+.|+|.+..|+.|+.||.+.+|.+.++...+.+.+ +...+++-.|.|
T Consensus 122 ATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~G-h~~~ct~G~f~p 200 (399)
T KOG0296|consen 122 ATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSG-HNSPCTCGEFIP 200 (399)
T ss_pred EecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecC-CCCCcccccccC
Confidence 9999999999999999998888876666888999999999999999999999999998777777776 566788999999
Q ss_pred CCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCC-----------------------------------------
Q 015490 263 LNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVRE----------------------------------------- 301 (406)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~----------------------------------------- 301 (406)
+|++ ++++..|++|++||+.++.++..+....+
T Consensus 201 dGKr------~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~ 274 (399)
T KOG0296|consen 201 DGKR------ILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGT 274 (399)
T ss_pred CCce------EEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCC
Confidence 9995 45667799999999999888776651100
Q ss_pred -------------CeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEE
Q 015490 302 -------------PVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVR 368 (406)
Q Consensus 302 -------------~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~ 368 (406)
.|.++.++..=.+.|+|+.||+|.|||+...+...... |...|..+.|-+ ..+|++++.||.|+
T Consensus 275 ~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~--he~~V~~l~w~~-t~~l~t~c~~g~v~ 351 (399)
T KOG0296|consen 275 VPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE--HEDGVTKLKWLN-TDYLLTACANGKVR 351 (399)
T ss_pred CccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc--CCCceEEEEEcC-cchheeeccCceEE
Confidence 01112222233467889999999999999888877774 999999999998 68999999999999
Q ss_pred EEEecCCcCCCC
Q 015490 369 VTVIEDKKKSGG 380 (406)
Q Consensus 369 iw~~~~~~~~~~ 380 (406)
.||.++|+.+..
T Consensus 352 ~wDaRtG~l~~~ 363 (399)
T KOG0296|consen 352 QWDARTGQLKFT 363 (399)
T ss_pred eeeccccceEEE
Confidence 999999987543
No 47
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.98 E-value=1.5e-29 Score=211.98 Aligned_cols=270 Identities=17% Similarity=0.236 Sum_probs=216.8
Q ss_pred CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCC---eEEEEe-cCCeEEEEEec
Q 015490 68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGD---GIICAL-QNSCRLFEWDE 143 (406)
Q Consensus 68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~---~l~~~~-~~~~~i~~~~~ 143 (406)
..++++.+.-+| ....|+..+ +...++.||.++|.+++|.-... .+++++ |.++++|.|+.
T Consensus 114 ~~~~IltgsYDg----------~~riWd~~G-----k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 114 ASKWILTGSYDG----------TSRIWDLKG-----KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cCceEEEeecCC----------eeEEEecCC-----ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 367777654433 344566654 57788999999999888854333 366666 99999999987
Q ss_pred ccccceeecceeccceeeec-ccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC------------------------
Q 015490 144 VENTEIRRLGVKISEKVLSQ-LENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPS------------------------ 198 (406)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~------------------------ 198 (406)
...... .... -.|...|.+++..++|..+++|+.|.+|.||+..+
T Consensus 179 ~~~~~~----------~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~ 248 (423)
T KOG0313|consen 179 GENKVK----------ALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGG 248 (423)
T ss_pred chhhhh----------HHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccc
Confidence 543221 1111 14558899999999999999999999999999321
Q ss_pred -cceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcC
Q 015490 199 -LEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITD 277 (406)
Q Consensus 199 -~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (406)
+.++..+.+|..+|.++.|++ ...+++++.|.+|+.||+.+++....+.. ...+.++.++|... ++++++
T Consensus 249 ~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~--~ksl~~i~~~~~~~------Ll~~gs 319 (423)
T KOG0313|consen 249 TRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT--NKSLNCISYSPLSK------LLASGS 319 (423)
T ss_pred ccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec--CcceeEeecccccc------eeeecC
Confidence 224556778888999999998 66899999999999999999998887764 34588999999766 678889
Q ss_pred CCcEEEEEeCCCce---EEEEeeecCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCce-EEEEeecccccceEEEEEc
Q 015490 278 RGASIVTWNTTTWK---RIRTKQVVREPVSSFNVSADG-KLLAVGTASGDISIIDSSSLQ-VRTAVKKAHLGIVTALAFS 352 (406)
Q Consensus 278 ~~~~i~~~d~~~~~---~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~s 352 (406)
.|..+++||.+++. ...++.+|.+.|.++.|+|.. ..|++|+.|+++++||+++.+ ++..+. +|...|.++.|.
T Consensus 320 sdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~-~h~DKvl~vdW~ 398 (423)
T KOG0313|consen 320 SDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA-GHNDKVLSVDWN 398 (423)
T ss_pred CCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec-cCCceEEEEecc
Confidence 99999999998764 467788999999999999955 567788999999999999887 888886 899999999998
Q ss_pred CCCCeEEEEECCCcEEEEEec
Q 015490 353 YDSRALVSASMDSSVRVTVIE 373 (406)
Q Consensus 353 p~~~~l~s~s~dg~i~iw~~~ 373 (406)
. +.++++|+.|++|+|+.-.
T Consensus 399 ~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 399 E-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred C-CceEEeccCcceEEEeccc
Confidence 4 6789999999999998754
No 48
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.98 E-value=1.5e-31 Score=230.46 Aligned_cols=260 Identities=16% Similarity=0.213 Sum_probs=213.4
Q ss_pred ccccceeEEecCCCCceEEEEcc-CCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECC
Q 015490 101 LSDQPVAELRTDSDLPYRMAIHP-HGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDS 177 (406)
Q Consensus 101 ~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~ 177 (406)
++...+.++.+|+..|.++.|.| .+.+|++++ |+.++||++-. ...+++++.+| .+|..++|++
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~-------------~~~~lrtf~gH~k~Vrd~~~s~ 268 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-------------DRRCLRTFKGHRKPVRDASFNN 268 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec-------------Ccceehhhhcchhhhhhhhccc
Confidence 34567889999999999999999 666666666 88888877653 46677777777 7899999999
Q ss_pred CCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCC-CEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEE
Q 015490 178 EGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDG-KFLVSLGNRGPGRVWDLASSAVATPLAKENDELFA 256 (406)
Q Consensus 178 ~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 256 (406)
+|..|.+++.|+.|++||+++|++...+... ..++|+.|+||+ +.+++|+.|+.|+.||+++++.++.+..+ -..+.
T Consensus 269 ~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~-~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~h-Lg~i~ 346 (503)
T KOG0282|consen 269 CGTSFLSASFDRFLKLWDTETGQVLSRFHLD-KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRH-LGAIL 346 (503)
T ss_pred cCCeeeeeecceeeeeeccccceEEEEEecC-CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhh-hhhee
Confidence 9999999999999999999999999877533 368999999998 78999999999999999999988887754 44688
Q ss_pred EEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeee-cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceE-
Q 015490 257 SCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV-VREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQV- 334 (406)
Q Consensus 257 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~- 334 (406)
.+.|-+++++ .++.++++.+++|+.+..-.+..... +.....++..+|+++++++-+.|+.|.+|.+...-.
T Consensus 347 ~i~F~~~g~r------FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~ 420 (503)
T KOG0282|consen 347 DITFVDEGRR------FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRL 420 (503)
T ss_pred eeEEccCCce------EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccccc
Confidence 9999999996 34557899999999998766554432 234567899999999999999999999999754222
Q ss_pred --EEEeecccc--cceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCch
Q 015490 335 --RTAVKKAHL--GIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLN 382 (406)
Q Consensus 335 --~~~~~~~~~--~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~ 382 (406)
...+ .+|. +.-..+.|||||++|++|+.||.+.+||.++-+.+..++
T Consensus 421 nkkK~f-eGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk 471 (503)
T KOG0282|consen 421 NKKKRF-EGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK 471 (503)
T ss_pred CHhhhh-cceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc
Confidence 2233 3664 446688999999999999999999999999987766554
No 49
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=9.7e-32 Score=222.70 Aligned_cols=233 Identities=19% Similarity=0.322 Sum_probs=195.7
Q ss_pred CCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCEEEEeeCCC
Q 015490 112 DSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGSENG 189 (406)
Q Consensus 112 h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~dg 189 (406)
....|+|+.+ |...+++|. |++++||+.+ ...+...+.+| +.|.|+.|. .+.+++|+.|.
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n--------------~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDs 257 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKN--------------SLECLKILTGHTGSVLCLQYD--ERVIVSGSSDS 257 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccc--------------cHHHHHhhhcCCCcEEeeecc--ceEEEecCCCc
Confidence 4578999998 556678887 9999998765 33344444444 889999984 56999999999
Q ss_pred eEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeee--eecccCCcceEEEEEEEcCCCCc
Q 015490 190 NLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVA--TPLAKENDELFASCRFSPLNNED 267 (406)
Q Consensus 190 ~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 267 (406)
+|+|||+++++++..+..|...|..+.|+. .++++++.|.++.+||+.+...+ ......|...+..+.|+..
T Consensus 258 TvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k---- 331 (499)
T KOG0281|consen 258 TVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---- 331 (499)
T ss_pred eEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc----
Confidence 999999999999999999989999999974 48999999999999999875532 2222345666778888653
Q ss_pred eEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceE
Q 015490 268 YVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVT 347 (406)
Q Consensus 268 ~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 347 (406)
.+++++.|.+|++|++.+.+.++++.+|...|.|+.+. ++++++|+.|.+|++||+..|.+++.+. +|..-|.
T Consensus 332 ----yIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLe-GHEeLvR 404 (499)
T KOG0281|consen 332 ----YIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVR 404 (499)
T ss_pred ----eEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHh-chHHhhh
Confidence 34566789999999999999999999999999888875 8999999999999999999999999996 9999999
Q ss_pred EEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490 348 ALAFSYDSRALVSASMDSSVRVTVIEDKKK 377 (406)
Q Consensus 348 ~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~ 377 (406)
++.|. .+.+++|+.||+|+|||+..+..
T Consensus 405 ciRFd--~krIVSGaYDGkikvWdl~aald 432 (499)
T KOG0281|consen 405 CIRFD--NKRIVSGAYDGKIKVWDLQAALD 432 (499)
T ss_pred heeec--CceeeeccccceEEEEecccccC
Confidence 99995 56899999999999999987654
No 50
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.6e-29 Score=226.34 Aligned_cols=260 Identities=19% Similarity=0.255 Sum_probs=215.5
Q ss_pred EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc--c
Q 015490 90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE--N 166 (406)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 166 (406)
.++.|+.....+ ......+.+.|+++.|+++|.+|++|. ++.+.||+... .+ .+..+. |
T Consensus 198 ~vylW~~~s~~v----~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~--~k------------~~~~~~~~h 259 (484)
T KOG0305|consen 198 SVYLWSASSGSV----TELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE--QK------------KTRTLRGSH 259 (484)
T ss_pred eEEEEecCCCce----EEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhh--cc------------ccccccCCc
Confidence 567777766431 222233389999999999999999997 88888876543 22 222233 4
Q ss_pred cCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEee-eeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee
Q 015490 167 VGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILN-ESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT 245 (406)
Q Consensus 167 ~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~ 245 (406)
...|-+++|+ +..+.+|+.|+.|..+|++..+.... +.+|...|..++|++|++++|+|+.|+.+.|||....++..
T Consensus 260 ~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~ 337 (484)
T KOG0305|consen 260 ASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKF 337 (484)
T ss_pred CceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccE
Confidence 5889999998 66899999999999999998876655 66677799999999999999999999999999997777777
Q ss_pred ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEE--eCCCc
Q 015490 246 PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVG--TASGD 323 (406)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~--~~dg~ 323 (406)
.+..| ...|..++|+|.... ++..+.|..|+.|++||..+++.+...... ..|.++.|++..+-|+++ ..++.
T Consensus 338 ~~~~H-~aAVKA~awcP~q~~---lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg-sQVcsL~Wsk~~kEi~sthG~s~n~ 412 (484)
T KOG0305|consen 338 TFTEH-TAAVKALAWCPWQSG---LLATGGGSADRCIKFWNTNTGARIDSVDTG-SQVCSLIWSKKYKELLSTHGYSENQ 412 (484)
T ss_pred EEecc-ceeeeEeeeCCCccC---ceEEcCCCcccEEEEEEcCCCcEecccccC-CceeeEEEcCCCCEEEEecCCCCCc
Confidence 77654 567899999999887 445666778999999999999998887654 789999999998777764 34778
Q ss_pred EEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCC
Q 015490 324 ISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDK 375 (406)
Q Consensus 324 i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~ 375 (406)
|.||+..+.+.+..+. +|...|..++++|||..+++|+.|.++++|++-+.
T Consensus 413 i~lw~~ps~~~~~~l~-gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 413 ITLWKYPSMKLVAELL-GHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEEEeccccceeeeec-CCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 9999999999999986 99999999999999999999999999999999764
No 51
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.8e-29 Score=203.48 Aligned_cols=255 Identities=18% Similarity=0.221 Sum_probs=204.0
Q ss_pred cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccc-cCcEEEEEECCCCCE
Q 015490 104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN-VGQQLALTFDSEGTI 181 (406)
Q Consensus 104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~ 181 (406)
++...+..-.+.|.++.|+++|.++++++ |..++||+.. ++ +.+.++.. +..+..++|......
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~--~g------------~~~~ti~skkyG~~~~~Fth~~~~ 70 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSL--SG------------KQVKTINSKKYGVDLACFTHHSNT 70 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcC--CC------------ceeeEeecccccccEEEEecCCce
Confidence 34455666778999999999999999977 7788887654 23 33333333 356778888776666
Q ss_pred EEEeeC--CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEE
Q 015490 182 FAAGSE--NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCR 259 (406)
Q Consensus 182 l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 259 (406)
++.++. |.+|+..++.+.+.++.+.+|...|.+++.+|-+..+++++.|++|++||++..++...+..... ..++
T Consensus 71 ~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~---pi~A 147 (311)
T KOG1446|consen 71 VIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR---PIAA 147 (311)
T ss_pred EEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC---ccee
Confidence 666665 88999999999999999999999999999999999999999999999999998888776654433 2589
Q ss_pred EEcCCCCceEEEEEEEcCCCcEEEEEeCCCc--eEEEEeeec---CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceE
Q 015490 260 FSPLNNEDYVLYIAAITDRGASIVTWNTTTW--KRIRTKQVV---REPVSSFNVSADGKLLAVGTASGDISIIDSSSLQV 334 (406)
Q Consensus 260 ~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~--~~~~~~~~~---~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~ 334 (406)
|.|.|- +.|.+.....|++||+++. .+..++... ....+.+.|||||++|+.++..+.+++.|.-+|..
T Consensus 148 fDp~GL------ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~ 221 (311)
T KOG1446|consen 148 FDPEGL------IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV 221 (311)
T ss_pred ECCCCc------EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE
Confidence 999985 3444444559999999874 234444433 46789999999999999999999999999999998
Q ss_pred EEEeecccccc---eEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCch
Q 015490 335 RTAVKKAHLGI---VTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLN 382 (406)
Q Consensus 335 ~~~~~~~~~~~---v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~ 382 (406)
...+. .+... -.+.+|+||++++++|+.||+|.+|+++++++++.+.
T Consensus 222 ~~tfs-~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~ 271 (311)
T KOG1446|consen 222 KSTFS-GYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLR 271 (311)
T ss_pred eeeEe-eccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEec
Confidence 88885 44433 2588999999999999999999999999998876553
No 52
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=8.2e-31 Score=217.20 Aligned_cols=249 Identities=16% Similarity=0.229 Sum_probs=202.3
Q ss_pred EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-
Q 015490 90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV- 167 (406)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 167 (406)
.+..||.+. .+.+..+.||++.|.|+.|. .+.+++|+ |.++++|+|+ +.+++.++-||
T Consensus 218 TikiWD~n~----~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~--------------tge~l~tlihHc 277 (499)
T KOG0281|consen 218 TIKIWDKNS----LECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVN--------------TGEPLNTLIHHC 277 (499)
T ss_pred ceEEecccc----HHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEecc--------------CCchhhHHhhhc
Confidence 344455544 35778899999999999994 46777776 8999998887 44455555555
Q ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc---eEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeee
Q 015490 168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLE---IILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVA 244 (406)
Q Consensus 168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~ 244 (406)
..|..+.|+. .++++++.|.++.+||+.... +...+.+|...|+.+.|+ .+++++++.|.+|++|++.+++.+
T Consensus 278 eaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efv 353 (499)
T KOG0281|consen 278 EAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFV 353 (499)
T ss_pred ceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeee
Confidence 8899999975 489999999999999997554 234567888899999995 569999999999999999999999
Q ss_pred eecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcE
Q 015490 245 TPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDI 324 (406)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i 324 (406)
+.+.+|..+ +.|+.+. .. ++++|+.|.+|++||+..|.+++.+++|..-|.++.|. .+.+++|..||+|
T Consensus 354 Rtl~gHkRG-IAClQYr---~r-----lvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGki 422 (499)
T KOG0281|consen 354 RTLNGHKRG-IACLQYR---DR-----LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKI 422 (499)
T ss_pred hhhhccccc-ceehhcc---Ce-----EEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceE
Confidence 999877553 4444443 22 67889999999999999999999999999999999997 6789999999999
Q ss_pred EEEECCCceEE---------EEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490 325 SIIDSSSLQVR---------TAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKK 376 (406)
Q Consensus 325 ~i~d~~~~~~~---------~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~ 376 (406)
++||+.++... ..+. .|++.|..++|. ...+++++.|.+|.|||+.++-
T Consensus 423 kvWdl~aaldpra~~~~~Cl~~lv-~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 423 KVWDLQAALDPRAPASTLCLRTLV-EHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred EEEecccccCCcccccchHHHhhh-hccceeEEEeec--ceEEEeccCCCeEEEEEcCCCC
Confidence 99999875432 2332 588999999995 5679999999999999997654
No 53
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4e-30 Score=236.25 Aligned_cols=252 Identities=15% Similarity=0.264 Sum_probs=217.3
Q ss_pred EecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC
Q 015490 109 LRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE 187 (406)
Q Consensus 109 ~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 187 (406)
++..+..|-.++|+|...+++++- ++.+++|++... ..+.+ ...|.++|+.+.|+|++.+|++|+.
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~--tli~r-----------FdeHdGpVRgv~FH~~qplFVSGGD 71 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG--TLIDR-----------FDEHDGPVRGVDFHPTQPLFVSGGD 71 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhh--hHHhh-----------hhccCCccceeeecCCCCeEEecCC
Confidence 445567889999999999999987 999999888752 22222 2236699999999999999999999
Q ss_pred CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCc
Q 015490 188 NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNED 267 (406)
Q Consensus 188 dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (406)
|-.|+||+..+.+++.++.+|-+-|+.+.|++.-.+|+++|+|.+|+||+..+++++..+.+| ...|.|..|+|...
T Consensus 72 DykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGH-nHYVMcAqFhptED-- 148 (1202)
T KOG0292|consen 72 DYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGH-NHYVMCAQFHPTED-- 148 (1202)
T ss_pred ccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecC-ceEEEeeccCCccc--
Confidence 999999999999999999999999999999999999999999999999999999999999875 55789999999877
Q ss_pred eEEEEEEEcCCCcEEEEEeCCCce-----------------------------EEEEeeecCCCeEEEEEcCCCCEEEEE
Q 015490 268 YVLYIAAITDRGASIVTWNTTTWK-----------------------------RIRTKQVVREPVSSFNVSADGKLLAVG 318 (406)
Q Consensus 268 ~~l~~~~~~~~~~~i~~~d~~~~~-----------------------------~~~~~~~~~~~i~~~~~sp~~~~l~~~ 318 (406)
++++++-|.+|++||+...+ ....+.+|...|.-++|+|.-..|++|
T Consensus 149 ----lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG 224 (1202)
T KOG0292|consen 149 ----LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSG 224 (1202)
T ss_pred ----eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEec
Confidence 56788899999999986311 123456788889999999999999999
Q ss_pred eCCCcEEEEECCCceE--EEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490 319 TASGDISIIDSSSLQV--RTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL 381 (406)
Q Consensus 319 ~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~ 381 (406)
+.|..|++|.+...+. +.+. ++|...|.++-|+|...+++|.|.|++|+|||+...+.+..|
T Consensus 225 ~DDRqVKlWrmnetKaWEvDtc-rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 225 ADDRQVKLWRMNETKAWEVDTC-RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred CCcceeeEEEeccccceeehhh-hcccCCcceEEecCccceeEecCCCccEEEEecccccceeee
Confidence 9999999999875442 3334 489999999999999999999999999999999998887776
No 54
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.4e-29 Score=232.57 Aligned_cols=261 Identities=19% Similarity=0.231 Sum_probs=205.1
Q ss_pred eeEEe-cCCCCceEEEEccCCCeEEEEe-cCCeEEEEEeccc------c---------------------c-ceee----
Q 015490 106 VAELR-TDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVE------N---------------------T-EIRR---- 151 (406)
Q Consensus 106 ~~~~~-~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~------~---------------------~-~~~~---- 151 (406)
.+.+. .|.+.|.+|.||+||+|||+|+ |+-++||.+-... + . ....
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 34555 8999999999999999999999 9999999876500 0 0 0000
Q ss_pred -----------c---ceeccceeeeccccc-CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEE
Q 015490 152 -----------L---GVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLS 216 (406)
Q Consensus 152 -----------~---~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 216 (406)
+ ......+++..+.+| +.|..+.||.++ +|++++.|.+|++|++...+++..+ .|.+-|+|++
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVa 416 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVA 416 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEE-ecCCeeEEEE
Confidence 0 000124455556666 889999999775 7889999999999999988888654 6888999999
Q ss_pred Ecc-CCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEE
Q 015490 217 FSP-DGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRT 295 (406)
Q Consensus 217 ~s~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~ 295 (406)
|+| |.++|++|+-|+.++||++...+.+.....+ ..|++++|.|+|+. ++.|..+|.+++|+....+....
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~--~lITAvcy~PdGk~------avIGt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR--DLITAVCYSPDGKG------AVIGTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCeeEeehhhh--hhheeEEeccCCce------EEEEEeccEEEEEEccCCeEEEe
Confidence 999 7889999999999999999887776655433 67999999999984 56678899999999998776655
Q ss_pred eeec--------CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCceEEEEeecccccc-eEEEEEcCCCCeEEEEECCC
Q 015490 296 KQVV--------REPVSSFNVSAD-GKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGI-VTALAFSYDSRALVSASMDS 365 (406)
Q Consensus 296 ~~~~--------~~~i~~~~~sp~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~s~s~dg 365 (406)
...+ ...|+.+.|.|. ...+++.+.|..|+|||.++..++..++..++.. -....|+.||++|++++.|.
T Consensus 489 ~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs 568 (712)
T KOG0283|consen 489 FHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDS 568 (712)
T ss_pred eeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCc
Confidence 4332 236999999984 3457777899999999998888888887334332 35778999999999999999
Q ss_pred cEEEEEecCCc
Q 015490 366 SVRVTVIEDKK 376 (406)
Q Consensus 366 ~i~iw~~~~~~ 376 (406)
.|++|++....
T Consensus 569 ~VYiW~~~~~~ 579 (712)
T KOG0283|consen 569 WVYIWKNDSFN 579 (712)
T ss_pred eEEEEeCCCCc
Confidence 99999985443
No 55
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=5.7e-29 Score=206.98 Aligned_cols=260 Identities=15% Similarity=0.225 Sum_probs=221.3
Q ss_pred EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-
Q 015490 90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV- 167 (406)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 167 (406)
.+..||..+ .+...++.||-..|..+++|+-..|+++++ |+.++-|++. ..+.++.+.+|
T Consensus 174 tikIwDlat----g~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe--------------~nkvIR~YhGHl 235 (460)
T KOG0285|consen 174 TIKIWDLAT----GQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE--------------YNKVIRHYHGHL 235 (460)
T ss_pred eeEEEEccc----CeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEech--------------hhhhHHHhcccc
Confidence 556677766 357788999999999999999999999998 8888888776 44556666666
Q ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeec
Q 015490 168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPL 247 (406)
Q Consensus 168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 247 (406)
..|.|++..|.-..|++|+.|.+++|||+++...+..+.+|...|..+.+.|-...+++||.|++|++||++.|+....+
T Consensus 236 S~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tl 315 (460)
T KOG0285|consen 236 SGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITL 315 (460)
T ss_pred ceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEee
Confidence 88999999999999999999999999999999999999999999999999998888999999999999999999988887
Q ss_pred ccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 015490 248 AKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISII 327 (406)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~ 327 (406)
.. +...+.+++.+|... .+++++ ...|+-|++..+..+..+.+|...|.+++...|+ ++++|+++|.+.+|
T Consensus 316 t~-hkksvral~lhP~e~------~fASas-~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fw 386 (460)
T KOG0285|consen 316 TH-HKKSVRALCLHPKEN------LFASAS-PDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFW 386 (460)
T ss_pred ec-ccceeeEEecCCchh------hhhccC-CccceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEE
Confidence 75 456688999999875 345544 4569999999999999999999999999998887 78899999999999
Q ss_pred ECCCceEEEEeec-------ccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490 328 DSSSLQVRTAVKK-------AHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKK 376 (406)
Q Consensus 328 d~~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~ 376 (406)
|.+++-..+.... .....|.+.+|...|..|++|..|.+|++|.-....
T Consensus 387 dwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~a 442 (460)
T KOG0285|consen 387 DWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEHA 442 (460)
T ss_pred ecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccccc
Confidence 9998755444310 123468899999999999999999999999876543
No 56
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2e-29 Score=200.51 Aligned_cols=245 Identities=16% Similarity=0.226 Sum_probs=197.6
Q ss_pred eEEEEccC--CCeEEEEe-----cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCC-CEEEEeeCC
Q 015490 117 YRMAIHPH--GDGIICAL-----QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEG-TIFAAGSEN 188 (406)
Q Consensus 117 ~~~~~sp~--~~~l~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~d 188 (406)
+++.|||- ++..++++ .|..+++.++..... .-...+.+.-.+.+..++|+++. +.+++++.|
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~---------gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GD 82 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPK---------GIQECQSYDTEDGLFDVAWSENHENQVIAASGD 82 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCC---------CeEEEEeeecccceeEeeecCCCcceEEEEecC
Confidence 67889983 33333321 566788888775333 22334455667889999999954 778889999
Q ss_pred CeEEEEeCCC-cceEeeeeccCCceeEEEEccC-CCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCC
Q 015490 189 GNLRVFKWPS-LEIILNESEAHASVKDLSFSPD-GKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNE 266 (406)
Q Consensus 189 g~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (406)
|++++||+.. ..++..++.|..+|.++.|++- ++.++++|.|++|++|+...++.+.++.+ +...|....|+|....
T Consensus 83 GSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~g-h~~~Iy~a~~sp~~~n 161 (311)
T KOG0277|consen 83 GSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNG-HNSCIYQAAFSPHIPN 161 (311)
T ss_pred ceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecC-CccEEEEEecCCCCCC
Confidence 9999999643 3467778888889999999984 55788889999999999999999999887 4567889999999887
Q ss_pred ceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCce-EEEEeeccccc
Q 015490 267 DYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSA-DGKLLAVGTASGDISIIDSSSLQ-VRTAVKKAHLG 344 (406)
Q Consensus 267 ~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~ 344 (406)
++++.+.|+.+++||++.......+..|...|.++.|+. +.+.+++|+.|+.|++||+++.+ ++..+ .+|.-
T Consensus 162 -----lfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL-~gh~~ 235 (311)
T KOG0277|consen 162 -----LFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL-NGHGL 235 (311)
T ss_pred -----eEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee-cCCce
Confidence 678889999999999987555555888988999999998 66789999999999999998754 56666 49999
Q ss_pred ceEEEEEcCC-CCeEEEEECCCcEEEEEecCCcC
Q 015490 345 IVTALAFSYD-SRALVSASMDSSVRVTVIEDKKK 377 (406)
Q Consensus 345 ~v~~~~~sp~-~~~l~s~s~dg~i~iw~~~~~~~ 377 (406)
.|+.+.|||. ...|++++.|-+++|||...+..
T Consensus 236 AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds 269 (311)
T KOG0277|consen 236 AVRKVKFSPHHASLLASASYDMTVRIWDPERQDS 269 (311)
T ss_pred EEEEEecCcchhhHhhhccccceEEecccccchh
Confidence 9999999996 46789999999999999986543
No 57
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=6.6e-29 Score=203.00 Aligned_cols=253 Identities=13% Similarity=0.260 Sum_probs=215.4
Q ss_pred cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEE
Q 015490 104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIF 182 (406)
Q Consensus 104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 182 (406)
..++++..|.+.|+++.|+|....|++++ |+++++|++.... ..+..+.++...+|.++.|+|.|.+|
T Consensus 163 PvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~s-----------aKrA~K~~qd~~~vrsiSfHPsGefl 231 (430)
T KOG0640|consen 163 PVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTS-----------AKRAFKVFQDTEPVRSISFHPSGEFL 231 (430)
T ss_pred ceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHH-----------HHHHHHHhhccceeeeEeecCCCceE
Confidence 35678999999999999999999999998 9999999987543 23344456677899999999999999
Q ss_pred EEeeCCCeEEEEeCCCcceEeee---eccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeeccc-CCcceEEEE
Q 015490 183 AAGSENGNLRVFKWPSLEIILNE---SEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAK-ENDELFASC 258 (406)
Q Consensus 183 ~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~ 258 (406)
++|....++++||+++-++...- .+|.+.|+++.+++.+++.++++.||.|++||--+++++.++.. |.+..|.+.
T Consensus 232 lvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa 311 (430)
T KOG0640|consen 232 LVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSA 311 (430)
T ss_pred EEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeE
Confidence 99999999999999998876543 24555999999999999999999999999999999999998865 445678899
Q ss_pred EEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC-----CCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCc
Q 015490 259 RFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR-----EPVSSFNVSADGKLLAVGTA-SGDISIIDSSSL 332 (406)
Q Consensus 259 ~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~~ 332 (406)
.|..++++ +.+.+.|..+++|.+.+++.+..+.+.. ..-+...|+....|++.-.+ .+.+.-||.++.
T Consensus 312 ~Ftkn~ky------iLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 312 VFTKNGKY------ILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred EEccCCeE------EeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence 99999984 4566789999999999999999887652 12245668888888887665 677999999999
Q ss_pred eEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490 333 QVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIE 373 (406)
Q Consensus 333 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~ 373 (406)
..+..+..+|++.++.+.-||.+..+++|+.|..+|+|--+
T Consensus 386 dr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 386 DRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred hhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 88888877999999999999999999999999999999754
No 58
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.1e-28 Score=222.84 Aligned_cols=267 Identities=18% Similarity=0.228 Sum_probs=219.9
Q ss_pred EEEEEecCCCCccccceeEEecCCCCceEEEE-ccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-c
Q 015490 90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAI-HPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-N 166 (406)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 166 (406)
.++.++.+. .+....+-|..+.|..|.| .|+.++|++++ ...+++|+..... +. .+. |
T Consensus 304 nl~l~d~~~----l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~--------------c~-ii~GH 364 (775)
T KOG0319|consen 304 NLFLYDEDE----LTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSY--------------CQ-IIPGH 364 (775)
T ss_pred eEEEEEccc----cEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCc--------------eE-EEeCc
Confidence 444455444 3466778888999999997 56778888886 8888888544321 11 233 4
Q ss_pred cCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc----eEeeeeccCCceeEEEEccCC-CEEEEEeCCCCEEEEEcCCC
Q 015490 167 VGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLE----IILNESEAHASVKDLSFSPDG-KFLVSLGNRGPGRVWDLASS 241 (406)
Q Consensus 167 ~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~~s~~~-~~l~s~s~d~~i~iwd~~~~ 241 (406)
...|.++....+|-+|++|+.|.++++|.++++. ++....+|...|.+++++..+ .+|+++|.|+++++|++...
T Consensus 365 ~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s 444 (775)
T KOG0319|consen 365 TEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKS 444 (775)
T ss_pred hhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCc
Confidence 4778999976788999999999999999885443 344566788899999997654 48999999999999999763
Q ss_pred eeee---e-----cccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCC
Q 015490 242 AVAT---P-----LAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGK 313 (406)
Q Consensus 242 ~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~ 313 (406)
+... . ....|+..|.+++.+|+.+ ++++++.|.+.++|++.......++.+|...+.++.|+|..+
T Consensus 445 ~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk------LiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq 518 (775)
T KOG0319|consen 445 KETAFPIVLTCRYTERAHDKDINCVAIAPNDK------LIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQ 518 (775)
T ss_pred ccccccceehhhHHHHhhcccccceEecCCCc------eEEecccccceeeecccCceEEEEeeCCccceEEEEeccccc
Confidence 2211 1 1224667799999999998 689999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCch
Q 015490 314 LLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLN 382 (406)
Q Consensus 314 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~ 382 (406)
.+++++.|++|+||.+.++.++.++. +|...|..+.|-.+|+.|++++.||-|++|++++++.+.++.
T Consensus 519 ~laT~SgD~TvKIW~is~fSClkT~e-GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD 586 (775)
T KOG0319|consen 519 LLATCSGDKTVKIWSISTFSCLKTFE-GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD 586 (775)
T ss_pred eeEeccCCceEEEEEeccceeeeeec-CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh
Confidence 99999999999999999999999996 999999999999999999999999999999999998876553
No 59
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=7.9e-28 Score=223.08 Aligned_cols=238 Identities=11% Similarity=0.145 Sum_probs=184.9
Q ss_pred eEEecCCCCceEEEEcc-CCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCC-CEE
Q 015490 107 AELRTDSDLPYRMAIHP-HGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEG-TIF 182 (406)
Q Consensus 107 ~~~~~h~~~v~~~~~sp-~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g-~~l 182 (406)
..+.+|.+.|.+++|+| ++.+|++++ |+.+++|++...... .. ....+..+. |...|.+++|+|++ ++|
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~--~~-----~~~~l~~L~gH~~~V~~l~f~P~~~~iL 141 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLT--QN-----ISDPIVHLQGHTKKVGIVSFHPSAMNVL 141 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccc--cc-----cCcceEEecCCCCcEEEEEeCcCCCCEE
Confidence 45789999999999999 788888887 899999887542110 00 112233334 44789999999986 799
Q ss_pred EEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEc
Q 015490 183 AAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSP 262 (406)
Q Consensus 183 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (406)
++|+.|++|+|||+++++....+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+..+.......+.|.+
T Consensus 142 aSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~ 221 (493)
T PTZ00421 142 ASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK 221 (493)
T ss_pred EEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC
Confidence 99999999999999999988888888889999999999999999999999999999999988888776655556778888
Q ss_pred CCCCceEEEEE-EEcCCCcEEEEEeCCCce-EEEEeeec-CCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCceEEEEe
Q 015490 263 LNNEDYVLYIA-AITDRGASIVTWNTTTWK-RIRTKQVV-REPVSSFNVSADGKLLAVGTA-SGDISIIDSSSLQVRTAV 338 (406)
Q Consensus 263 ~~~~~~~l~~~-~~~~~~~~i~~~d~~~~~-~~~~~~~~-~~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~~~~~~~~ 338 (406)
++.. ++.+ .+.+.++.|++||+++.. ++.....+ ...+....|++++++|++++. |+.|++||+.+++.....
T Consensus 222 ~~~~---ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 222 RKDL---IITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS 298 (493)
T ss_pred CCCe---EEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence 8764 2111 123468999999998754 33333323 244566779999999998874 999999999998887766
Q ss_pred ecccccceEEEEEcCC
Q 015490 339 KKAHLGIVTALAFSYD 354 (406)
Q Consensus 339 ~~~~~~~v~~~~~sp~ 354 (406)
...+..++..++|.|.
T Consensus 299 ~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 299 SYSSVEPHKGLCMMPK 314 (493)
T ss_pred eccCCCCCcceEeccc
Confidence 5345667888999885
No 60
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.3e-28 Score=218.55 Aligned_cols=274 Identities=13% Similarity=0.171 Sum_probs=225.2
Q ss_pred CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccc
Q 015490 68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVEN 146 (406)
Q Consensus 68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~ 146 (406)
.+.+++.+--.| .+.++.++.. ..+..+.-..-+|.+..|-+..+++++|+ |..++||+++.
T Consensus 24 tePw~la~LynG--------~V~IWnyetq------tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt--- 86 (794)
T KOG0276|consen 24 TEPWILAALYNG--------DVQIWNYETQ------TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT--- 86 (794)
T ss_pred CCceEEEeeecC--------eeEEEecccc------eeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc---
Confidence 566666553222 2344444443 37778888899999999999999999998 78888888763
Q ss_pred cceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc-ceEeeeeccCCceeEEEEcc-CCCE
Q 015490 147 TEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSL-EIILNESEAHASVKDLSFSP-DGKF 223 (406)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~-~~~~ 223 (406)
.+.+..++ |.+.|+|++.+|.-.++++++.|-+|++||.+.+ .+.+.+.+|..-|.+++|+| |.+.
T Consensus 87 -----------~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~nt 155 (794)
T KOG0276|consen 87 -----------GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNT 155 (794)
T ss_pred -----------ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccc
Confidence 33333444 4588999999999999999999999999999764 56777888888999999999 5679
Q ss_pred EEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCe
Q 015490 224 LVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPV 303 (406)
Q Consensus 224 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i 303 (406)
+++++-|++|++|.+.+..+..++.+| ...+.++.|-+.+.+. .+.++++|..+++||.++..++.++.+|...|
T Consensus 156 FaS~sLDrTVKVWslgs~~~nfTl~gH-ekGVN~Vdyy~~gdkp----ylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nv 230 (794)
T KOG0276|consen 156 FASASLDRTVKVWSLGSPHPNFTLEGH-EKGVNCVDYYTGGDKP----YLISGADDLTIKVWDYQTKSCVQTLEGHTNNV 230 (794)
T ss_pred eeeeeccccEEEEEcCCCCCceeeecc-ccCcceEEeccCCCcc----eEEecCCCceEEEeecchHHHHHHhhcccccc
Confidence 999999999999999999999999865 4568899999888652 35678899999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490 304 SSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKK 376 (406)
Q Consensus 304 ~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~ 376 (406)
..++|+|.-..+++|++||+++||+..+.+...++. ..-+.|++++-.+.++.++.|...|.| +..+...+
T Consensus 231 s~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn-~gleRvW~I~~~k~~~~i~vG~Deg~i-~v~lgree 301 (794)
T KOG0276|consen 231 SFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLN-YGLERVWCIAAHKGDGKIAVGFDEGSV-TVKLGREE 301 (794)
T ss_pred eEEEecCCCcEEEEecCCccEEEecCcceehhhhhh-cCCceEEEEeecCCCCeEEEeccCCcE-EEEccCCC
Confidence 999999999999999999999999999988888875 556789999998888888887766655 44554433
No 61
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.8e-28 Score=221.91 Aligned_cols=273 Identities=18% Similarity=0.200 Sum_probs=228.1
Q ss_pred CccEEEEEEecCCCCccccc----eeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceee
Q 015490 86 RNAVLLSHFDFASNSLSDQP----VAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVL 161 (406)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~----~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 161 (406)
.|.+..+.++... ...+++ -.++.||...|.++++|.+...+++++.+.++||+.+ +.+++
T Consensus 343 nNtv~~ysl~~s~-~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~--------------t~kci 407 (888)
T KOG0306|consen 343 NNTVEWYSLENSG-KTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRD--------------TLKCI 407 (888)
T ss_pred cCceEEEEeccCC-CCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEcc--------------Cccee
Confidence 4566777776622 211222 2467899999999999999998888889999998876 34455
Q ss_pred ecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCC-
Q 015490 162 SQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLAS- 240 (406)
Q Consensus 162 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~- 240 (406)
+++... .+.+..|-|.++++++|...|.+.+||+.....+..+..|.+.|++++.+||++.++++|.|.+|++||..-
T Consensus 408 RTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~ 486 (888)
T KOG0306|consen 408 RTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLV 486 (888)
T ss_pred EEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEE
Confidence 555544 788999999999999999999999999999988888888999999999999999999999999999999742
Q ss_pred ----Ceeeeeccc------CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcC
Q 015490 241 ----SAVATPLAK------ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSA 310 (406)
Q Consensus 241 ----~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp 310 (406)
+...+.+.. .-...+.|+++||+++. ++.+--|.++++|-+++.+....+.+|.-+|.||..||
T Consensus 487 ~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~------LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~ 560 (888)
T KOG0306|consen 487 VSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL------LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP 560 (888)
T ss_pred eccCcccceeeeeccceEEeccccEEEEEEcCCCcE------EEEEeccCeEEEEEecceeeeeeecccccceeEEeccC
Confidence 111111111 12345789999999993 45556799999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490 311 DGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL 381 (406)
Q Consensus 311 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~ 381 (406)
|++.+++|+.|.+|++|-++-|.+...+. +|...|.++.|.|....+.++|.|+.|+-||-..-+.+..+
T Consensus 561 DSklivTgSADKnVKiWGLdFGDCHKS~f-AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L 630 (888)
T KOG0306|consen 561 DSKLIVTGSADKNVKIWGLDFGDCHKSFF-AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL 630 (888)
T ss_pred CcCeEEeccCCCceEEeccccchhhhhhh-cccCceeEEEEcccceeEEEecCcceEEeechhhhhhheee
Confidence 99999999999999999999999999986 89999999999999999999999999999998876665443
No 62
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1.4e-27 Score=221.48 Aligned_cols=207 Identities=14% Similarity=0.177 Sum_probs=168.9
Q ss_pred cccCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCcc-------eEeeeeccCCceeEEEEccCC-CEEEEEeCCCCEEE
Q 015490 165 ENVGQQLALTFDS-EGTIFAAGSENGNLRVFKWPSLE-------IILNESEAHASVKDLSFSPDG-KFLVSLGNRGPGRV 235 (406)
Q Consensus 165 ~~~~~v~~~~~s~-~g~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~~~~~i~~~~~s~~~-~~l~s~s~d~~i~i 235 (406)
.|.+.|.+++|+| ++++|++|+.|++|++||+.++. .+..+.+|...|.+++|+|++ ++|++++.|++|+|
T Consensus 73 GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrI 152 (493)
T PTZ00421 73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNV 152 (493)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEE
Confidence 3558899999999 88999999999999999997652 455677788899999999985 68999999999999
Q ss_pred EEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCC-eEEEEEcCCCCE
Q 015490 236 WDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREP-VSSFNVSADGKL 314 (406)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-i~~~~~sp~~~~ 314 (406)
||+++++....+..+ ...+.+++|+|++. ++++++.|+.|++||+++++.+..+..|.+. ...+.|.+++..
T Consensus 153 WDl~tg~~~~~l~~h-~~~V~sla~spdG~------lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ 225 (493)
T PTZ00421 153 WDVERGKAVEVIKCH-SDQITSLEWNLDGS------LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDL 225 (493)
T ss_pred EECCCCeEEEEEcCC-CCceEEEEEECCCC------EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCe
Confidence 999999888877654 45689999999987 4677789999999999999998888888654 456789998877
Q ss_pred EEEEe----CCCcEEEEECCCceE-EEEeecccccceEEEEEcCCCCeEEEEE-CCCcEEEEEecCCcCC
Q 015490 315 LAVGT----ASGDISIIDSSSLQV-RTAVKKAHLGIVTALAFSYDSRALVSAS-MDSSVRVTVIEDKKKS 378 (406)
Q Consensus 315 l~~~~----~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~s~s-~dg~i~iw~~~~~~~~ 378 (406)
+++++ .|+.|++||+++... .......+...+....|++++++|++++ .|+.|++||+.+++..
T Consensus 226 ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~ 295 (493)
T PTZ00421 226 IITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLT 295 (493)
T ss_pred EEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceE
Confidence 77654 478999999987543 3333212334566778999999998887 5999999999987753
No 63
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.6e-28 Score=210.87 Aligned_cols=247 Identities=19% Similarity=0.249 Sum_probs=202.1
Q ss_pred ceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCC-CE
Q 015490 105 PVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEG-TI 181 (406)
Q Consensus 105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g-~~ 181 (406)
...++.-..+.|+++.|-.||+++++|. .|.++||+... ...++.+. |..++..+.|+|++ ..
T Consensus 60 ~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~--------------r~iLR~~~ah~apv~~~~f~~~d~t~ 125 (487)
T KOG0310|consen 60 VRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS--------------RVILRQLYAHQAPVHVTKFSPQDNTM 125 (487)
T ss_pred hhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc--------------HHHHHHHhhccCceeEEEecccCCeE
Confidence 4445555678999999999999999987 88888877332 22233333 55889999999954 77
Q ss_pred EEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCC-CEEEEEeCCCCEEEEEcCCC-eeeeecccCCcceEEEEE
Q 015490 182 FAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDG-KFLVSLGNRGPGRVWDLASS-AVATPLAKENDELFASCR 259 (406)
Q Consensus 182 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~s~s~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~ 259 (406)
|++|+.|+.+++||+.+......+.+|.+.|.|.+|+|.. ..+++||.||.|++||.++. ..+..+ .++.+|..+.
T Consensus 126 l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el--nhg~pVe~vl 203 (487)
T KOG0310|consen 126 LVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL--NHGCPVESVL 203 (487)
T ss_pred EEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe--cCCCceeeEE
Confidence 8889999999999999988766888999999999999964 48899999999999999987 444444 5677899999
Q ss_pred EEcCCCCceEEEEEEEcCCCcEEEEEeCCCce-EEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEe
Q 015490 260 FSPLNNEDYVLYIAAITDRGASIVTWNTTTWK-RIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAV 338 (406)
Q Consensus 260 ~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 338 (406)
+-|.|.. +++ .....+++||+-+|. .+..+..|...|+|+++..++..|++|+-|+.|++||+.+.+.+..+
T Consensus 204 ~lpsgs~------ias-AgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~ 276 (487)
T KOG0310|consen 204 ALPSGSL------IAS-AGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW 276 (487)
T ss_pred EcCCCCE------EEE-cCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEee
Confidence 9999873 233 236789999998654 44445558899999999999999999999999999999999999998
Q ss_pred ecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490 339 KKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKK 376 (406)
Q Consensus 339 ~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~ 376 (406)
. ..++|.+++.+|+++.++.|..||.+.+=+....+
T Consensus 277 ~--~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 277 K--YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKK 312 (487)
T ss_pred e--cccceeeEEecCCCceEEEecccceeeeehhhccc
Confidence 5 78999999999999999999999988776554433
No 64
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=4.6e-29 Score=205.21 Aligned_cols=281 Identities=14% Similarity=0.159 Sum_probs=231.0
Q ss_pred cccCCCCCcEEEEEcCCCCCCCCcCccEEEEEEecCC--CCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEE
Q 015490 62 KSDDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFAS--NSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRL 138 (406)
Q Consensus 62 ~~~~~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i 138 (406)
....+|++++++.+.-. ..++++.+.... +.+..+....+.-+.++|.|+.|+.|...+++|+ |+.+++
T Consensus 218 cA~FSPDgqyLvsgSvD--------GFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 218 CARFSPDGQYLVSGSVD--------GFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred heeeCCCCceEeecccc--------ceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 34456778887754322 234555544322 2334456667788999999999999999999998 999999
Q ss_pred EEEecccccceeecceeccceeeeccc--ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEE
Q 015490 139 FEWDEVENTEIRRLGVKISEKVLSQLE--NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLS 216 (406)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 216 (406)
|.+. ++.+++.+. |...|+|+.||.|+..+.+++.|.++++.-+.+|+++..+.+|.+-|+...
T Consensus 290 Wri~--------------tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ 355 (508)
T KOG0275|consen 290 WRIE--------------TGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEAT 355 (508)
T ss_pred EEEe--------------cchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceE
Confidence 8876 334444443 558899999999999999999999999999999999999999999999999
Q ss_pred EccCCCEEEEEeCCCCEEEEEcCCCeeeeecccC-CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEE
Q 015490 217 FSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKE-NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRT 295 (406)
Q Consensus 217 ~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~ 295 (406)
|.+||.++++++.||+|++|+.++.++..++... .+..+..+-.-|.+.. -...+....++++.++.. +.++.
T Consensus 356 ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpe-----h~iVCNrsntv~imn~qG-QvVrs 429 (508)
T KOG0275|consen 356 FTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPE-----HFIVCNRSNTVYIMNMQG-QVVRS 429 (508)
T ss_pred EcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCc-----eEEEEcCCCeEEEEeccc-eEEee
Confidence 9999999999999999999999999999888753 4456777888887765 234446788999999864 66777
Q ss_pred eeec---CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEE
Q 015490 296 KQVV---REPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTV 371 (406)
Q Consensus 296 ~~~~---~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~ 371 (406)
+... .+...+.+.||.|.++++.++|+.++.|...+|+...++. .|...|..++-+|..+.|++-+.||.+++|.
T Consensus 430 fsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~-VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 430 FSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLP-VHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeee-cccccccccccCcccchhhhhcccchhhhcC
Confidence 7543 3567788899999999999999999999999999999986 8999999999999999999999999999995
No 65
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=9.2e-28 Score=217.32 Aligned_cols=247 Identities=16% Similarity=0.180 Sum_probs=212.3
Q ss_pred cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCE
Q 015490 104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTI 181 (406)
Q Consensus 104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~ 181 (406)
+.++++.. +-+.+..|-|.+++++.|. .|.+.+|++.... .+.+.+ |.+.+..++.+||++.
T Consensus 405 kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~--------------l~Eti~AHdgaIWsi~~~pD~~g 468 (888)
T KOG0306|consen 405 KCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASAS--------------LVETIRAHDGAIWSISLSPDNKG 468 (888)
T ss_pred ceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhh--------------hhhhhhccccceeeeeecCCCCc
Confidence 46777753 4889999999999999998 7888888876432 222233 5689999999999999
Q ss_pred EEEeeCCCeEEEEeCCC-----cceEe-------eeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeeccc
Q 015490 182 FAAGSENGNLRVFKWPS-----LEIIL-------NESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAK 249 (406)
Q Consensus 182 l~~~~~dg~i~vwd~~~-----~~~~~-------~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 249 (406)
+++|+.|.+|++||+.- +.... ....-...|.|+.+||||++|+++--|++++||-+.+.+....+.+
T Consensus 469 ~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYG 548 (888)
T KOG0306|consen 469 FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYG 548 (888)
T ss_pred eEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecc
Confidence 99999999999999731 21111 1122344799999999999999999999999999999888888876
Q ss_pred CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 015490 250 ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDS 329 (406)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~ 329 (406)
| .-+|.|+..+|+++ ++++++.|..|++|-++-|.+.+.+-.|...|.++.|-|+...+++++.|+.|+-||.
T Consensus 549 H-kLPV~smDIS~DSk------livTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg 621 (888)
T KOG0306|consen 549 H-KLPVLSMDISPDSK------LIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDG 621 (888)
T ss_pred c-ccceeEEeccCCcC------eEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeech
Confidence 5 55788999999998 5778899999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490 330 SSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED 374 (406)
Q Consensus 330 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~ 374 (406)
...+.+..+. +|...|++++.+|+|.+++++|.|.+|++|.-..
T Consensus 622 ~kFe~iq~L~-~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 622 EKFEEIQKLD-GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred hhhhhheeec-cchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 9999999996 8999999999999999999999999999998654
No 66
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.2e-26 Score=181.88 Aligned_cols=258 Identities=18% Similarity=0.240 Sum_probs=200.4
Q ss_pred EEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEeccc-ccceeecce-eccceeeecccccCcEEEEEECCCCCEEEE
Q 015490 108 ELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVE-NTEIRRLGV-KISEKVLSQLENVGQQLALTFDSEGTIFAA 184 (406)
Q Consensus 108 ~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 184 (406)
.+-..+..|.+++|+|.|...++|+ +.+.+|..+.... ....+.... +|...+.+.-.|.+.|.|.+|||+|+++++
T Consensus 27 ~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliat 106 (350)
T KOG0641|consen 27 NILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIAT 106 (350)
T ss_pred EEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEe
Confidence 3445677899999999999999887 7777776554321 111111111 112223333344589999999999999999
Q ss_pred eeCCCeEEEEeCCCcceE-----eeeeccCCceeEEEEccC----CCEEEEEe-CCCCEEEEEcCCCeeeeecccCCcce
Q 015490 185 GSENGNLRVFKWPSLEII-----LNESEAHASVKDLSFSPD----GKFLVSLG-NRGPGRVWDLASSAVATPLAKENDEL 254 (406)
Q Consensus 185 ~~~dg~i~vwd~~~~~~~-----~~~~~~~~~i~~~~~s~~----~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~~~~~ 254 (406)
|+.|.+|++..++...+. ..+.-|.+.|.+++|..+ +..|++++ .|..|++-|...|+..+.+.++.+..
T Consensus 107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghi 186 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHI 186 (350)
T ss_pred cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccE
Confidence 999999999887543322 244557779999999643 45677665 57788888999999999998887765
Q ss_pred EEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeec-------CCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 015490 255 FASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVV-------REPVSSFNVSADGKLLAVGTASGDISII 327 (406)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-------~~~i~~~~~sp~~~~l~~~~~dg~i~i~ 327 (406)
..--.|+. ..+++++.|.+|++||++-..++.++... ...|.+++..|.|++|++|-.|....+|
T Consensus 187 lalyswn~--------~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~ly 258 (350)
T KOG0641|consen 187 LALYSWNG--------AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLY 258 (350)
T ss_pred EEEEEecC--------cEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEE
Confidence 54445543 26789999999999999988888776431 2578999999999999999999999999
Q ss_pred ECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490 328 DSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED 374 (406)
Q Consensus 328 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~ 374 (406)
|++.++.+..+. .|...|.++.|+|...||++|+.|..|++-|+..
T Consensus 259 dirg~r~iq~f~-phsadir~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 259 DIRGGRMIQRFH-PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred EeeCCceeeeeC-CCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence 999999999996 8999999999999999999999999999999853
No 67
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.5e-28 Score=211.02 Aligned_cols=253 Identities=22% Similarity=0.277 Sum_probs=204.9
Q ss_pred EecCCCCceEEEEccCCCe-EEEEecCCeEEEEEecccccceeecceeccceeee-cccccCcEEEEEECCCCCEEEEee
Q 015490 109 LRTDSDLPYRMAIHPHGDG-IICALQNSCRLFEWDEVENTEIRRLGVKISEKVLS-QLENVGQQLALTFDSEGTIFAAGS 186 (406)
Q Consensus 109 ~~~h~~~v~~~~~sp~~~~-l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~~~ 186 (406)
.....+.|.+++|+|...+ ++++++-.+.||.-... ...+ ..+....+.++.|-.||++||+|.
T Consensus 22 ~~ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~--------------~~~k~~srFk~~v~s~~fR~DG~LlaaGD 87 (487)
T KOG0310|consen 22 VHKEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTR--------------SVRKTFSRFKDVVYSVDFRSDGRLLAAGD 87 (487)
T ss_pred cccccCcceeEecCCCCCCceEEecccEEEEEecchh--------------hhhhhHHhhccceeEEEeecCCeEEEccC
Confidence 3344578999999997764 55566777888765432 1112 122446789999999999999999
Q ss_pred CCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCC-EEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCC
Q 015490 187 ENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGK-FLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNN 265 (406)
Q Consensus 187 ~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (406)
..|.|+|||+.+...+..+..|..++..+.|+|++. .+++|++|+.+++||+.+......+.+ +...+.+.+|+|...
T Consensus 88 ~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~-htDYVR~g~~~~~~~ 166 (487)
T KOG0310|consen 88 ESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSG-HTDYVRCGDISPAND 166 (487)
T ss_pred CcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecC-CcceeEeeccccCCC
Confidence 999999999877667778888999999999999655 677788899999999998887545554 566799999999988
Q ss_pred CceEEEEEEEcCCCcEEEEEeCCCc-eEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeeccccc
Q 015490 266 EDYVLYIAAITDRGASIVTWNTTTW-KRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLG 344 (406)
Q Consensus 266 ~~~~l~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 344 (406)
+ ++++|+.||.|++||+++. ..+.++ .|..+|.++.+-|.|..|++++ ...|++||+.+|.........|..
T Consensus 167 h-----ivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~K 239 (487)
T KOG0310|consen 167 H-----IVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNK 239 (487)
T ss_pred e-----EEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccc
Confidence 7 7899999999999999987 455555 4778999999999999999987 457999999965544443335999
Q ss_pred ceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCchH
Q 015490 345 IVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLNL 383 (406)
Q Consensus 345 ~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 383 (406)
.|+|+.+..++..|++++-|+.|++||+.+-+.+..+.+
T Consensus 240 tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~ 278 (487)
T KOG0310|consen 240 TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY 278 (487)
T ss_pred eEEEEEeecCCceEeecccccceEEEEccceEEEEeeec
Confidence 999999999999999999999999999888877666554
No 68
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.5e-27 Score=185.19 Aligned_cols=265 Identities=14% Similarity=0.168 Sum_probs=213.9
Q ss_pred CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccc
Q 015490 68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVEN 146 (406)
Q Consensus 68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~ 146 (406)
++++.+++|..- .+..|++.. ...+.++.+|...|..++.+.|+..+++++ |..+.+|+.+
T Consensus 28 dGnY~ltcGsdr----------tvrLWNp~r----g~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~---- 89 (307)
T KOG0316|consen 28 DGNYCLTCGSDR----------TVRLWNPLR----GALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN---- 89 (307)
T ss_pred CCCEEEEcCCCc----------eEEeecccc----cceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc----
Confidence 788888775422 566777755 348899999999999999999999998876 7776666554
Q ss_pred cceeecceeccceeeeccccc-CcEEEEEECCCCCEEEEeeCCCeEEEEeCCC--cceEeeeeccCCceeEEEEccCCCE
Q 015490 147 TEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGSENGNLRVFKWPS--LEIILNESEAHASVKDLSFSPDGKF 223 (406)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~i~~~~~s~~~~~ 223 (406)
+++..+.+++| +.|+.++|+.+...+++|+.|.++++||.+. .++++.+....+.|.++..+ +..
T Consensus 90 ----------TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~he 157 (307)
T KOG0316|consen 90 ----------TGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHE 157 (307)
T ss_pred ----------cCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccE
Confidence 44445555566 8899999999999999999999999999864 45677777777789999885 567
Q ss_pred EEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCe
Q 015490 224 LVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPV 303 (406)
Q Consensus 224 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i 303 (406)
|++|+.||+++.||++.|+...... +.+|+++.|+++++ +...+.-++++++.|-.+++.+..+++|...-
T Consensus 158 IvaGS~DGtvRtydiR~G~l~sDy~---g~pit~vs~s~d~n------c~La~~l~stlrLlDk~tGklL~sYkGhkn~e 228 (307)
T KOG0316|consen 158 IVAGSVDGTVRTYDIRKGTLSSDYF---GHPITSVSFSKDGN------CSLASSLDSTLRLLDKETGKLLKSYKGHKNME 228 (307)
T ss_pred EEeeccCCcEEEEEeecceeehhhc---CCcceeEEecCCCC------EEEEeeccceeeecccchhHHHHHhcccccce
Confidence 9999999999999999998776554 45799999999998 45566789999999999999999999987543
Q ss_pred E--EEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccc-eEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490 304 S--SFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGI-VTALAFSYDSRALVSASMDSSVRVTVIE 373 (406)
Q Consensus 304 ~--~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~s~s~dg~i~iw~~~ 373 (406)
. ..+++.....+++|++||.|++||+.....+..+. .+... |.++.++|.-..|+++. ++.+..|.-+
T Consensus 229 ykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~-~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~~~ 299 (307)
T KOG0316|consen 229 YKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLS-VVSTVIVTDLSCHPTMDDFITAT-GHGDLFWYQE 299 (307)
T ss_pred eeeeeeecccceeEEeccCCceEEEEEeccceeeeeec-cCCceeEEeeecccCccceeEec-CCceeceeeh
Confidence 3 45566677899999999999999999999998886 56655 78999999876677764 4556677543
No 69
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.8e-26 Score=179.79 Aligned_cols=252 Identities=14% Similarity=0.158 Sum_probs=205.8
Q ss_pred eeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCC----CC
Q 015490 106 VAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSE----GT 180 (406)
Q Consensus 106 ~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----g~ 180 (406)
..+-+.|.+.|+|.+|+|+|..+++|+ |..+++..++..+.+. ....+....|.+.|..++|-.+ |.
T Consensus 82 ~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~--------~g~dle~nmhdgtirdl~fld~~~s~~~ 153 (350)
T KOG0641|consen 82 CKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNA--------TGHDLEFNMHDGTIRDLAFLDDPESGGA 153 (350)
T ss_pred eeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccc--------cCcceeeeecCCceeeeEEecCCCcCce
Confidence 345568999999999999999999998 8899988877655432 1222222335688999999643 46
Q ss_pred EEEEee-CCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccC------Ccc
Q 015490 181 IFAAGS-ENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKE------NDE 253 (406)
Q Consensus 181 ~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~------~~~ 253 (406)
+|++++ .|..|++-|..+|+....+.+|.+.|.++- +-++-++++|+.|.+|++||++-..++..+... ...
T Consensus 154 il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gless 232 (350)
T KOG0641|consen 154 ILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESS 232 (350)
T ss_pred EEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccc
Confidence 777764 477888889999999999999999777652 335789999999999999999988888776432 235
Q ss_pred eEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc-
Q 015490 254 LFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSL- 332 (406)
Q Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~- 332 (406)
.+.+++..|.++ +++++..|....+||++.++.+..+..|...|.++.|+|...|+++++.|..|++-|++..
T Consensus 233 avaav~vdpsgr------ll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdl 306 (350)
T KOG0641|consen 233 AVAAVAVDPSGR------LLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDL 306 (350)
T ss_pred eeEEEEECCCcc------eeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccch
Confidence 688999999998 6788999999999999999999999999999999999999999999999999999998742
Q ss_pred --e-EEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490 333 --Q-VRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIE 373 (406)
Q Consensus 333 --~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~ 373 (406)
+ ++... ..|...+..+.|+|+.-.+++.+.|.++.+|-+.
T Consensus 307 a~el~~~vv-~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 307 AHELPIMVV-AEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred hhcCceEEE-EeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 1 22222 3689999999999999889999999999999764
No 70
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=3.6e-28 Score=211.19 Aligned_cols=267 Identities=15% Similarity=0.237 Sum_probs=200.8
Q ss_pred ccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccc--cCcEEEEEECC
Q 015490 101 LSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN--VGQQLALTFDS 177 (406)
Q Consensus 101 ~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~ 177 (406)
++...-..+.+|+..|.++++.|.|..+++|+ |.++++|++...... .+.++.+.. ...|+++.|++
T Consensus 155 IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas----------~~~fr~l~P~E~h~i~sl~ys~ 224 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS----------MRSFRQLQPCETHQINSLQYSV 224 (641)
T ss_pred CCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEeccccccc----------chhhhccCcccccccceeeecC
Confidence 34456678999999999999999999999998 999999998765432 112222222 25789999999
Q ss_pred CCCEEEEeeCCCeEEEEeCCCcceE------------eeeeccCCceeEEEEccCCC-EEEEEeCCCCEEEEEcCCCeee
Q 015490 178 EGTIFAAGSENGNLRVFKWPSLEII------------LNESEAHASVKDLSFSPDGK-FLVSLGNRGPGRVWDLASSAVA 244 (406)
Q Consensus 178 ~g~~l~~~~~dg~i~vwd~~~~~~~------------~~~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~~~~ 244 (406)
.|..|++.+.....+|+|-...+.. ....+|...++|.+|+|+.+ .+++++.||++++||+...+..
T Consensus 225 Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q 304 (641)
T KOG0772|consen 225 TGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ 304 (641)
T ss_pred CCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh
Confidence 9998888888889999995433222 22356666899999999765 7999999999999999765432
Q ss_pred e-ec----ccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceE---EEEeeecCC--CeEEEEEcCCCCE
Q 015490 245 T-PL----AKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR---IRTKQVVRE--PVSSFNVSADGKL 314 (406)
Q Consensus 245 ~-~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~--~i~~~~~sp~~~~ 314 (406)
. .+ .....-.++.|+|+++++ .++.+..||.|.+|+..+... ...-..|.. .|+|+.||+||++
T Consensus 305 ~qVik~k~~~g~Rv~~tsC~~nrdg~------~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~ 378 (641)
T KOG0772|consen 305 LQVIKTKPAGGKRVPVTSCAWNRDGK------LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNY 378 (641)
T ss_pred eeEEeeccCCCcccCceeeecCCCcc------hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccch
Confidence 2 22 223445688999999998 367788999999999865432 233345554 8999999999999
Q ss_pred EEEEeCCCcEEEEECCCceE-EEEeec-ccccceEEEEEcCCCCeEEEEE------CCCcEEEEEecCCcCCCCchH
Q 015490 315 LAVGTASGDISIIDSSSLQV-RTAVKK-AHLGIVTALAFSYDSRALVSAS------MDSSVRVTVIEDKKKSGGLNL 383 (406)
Q Consensus 315 l~~~~~dg~i~i~d~~~~~~-~~~~~~-~~~~~v~~~~~sp~~~~l~s~s------~dg~i~iw~~~~~~~~~~~~~ 383 (406)
|++-+.|+++++||++..+. +..... ....+-+.++|||+.+++++|+ ..|++.+||-.+-+.+.++.+
T Consensus 379 LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i 455 (641)
T KOG0772|consen 379 LLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI 455 (641)
T ss_pred hhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC
Confidence 99999999999999987543 333321 1223467899999999999986 346799999888777665543
No 71
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.5e-27 Score=194.16 Aligned_cols=249 Identities=22% Similarity=0.293 Sum_probs=203.0
Q ss_pred cccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCC
Q 015490 102 SDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGT 180 (406)
Q Consensus 102 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 180 (406)
...++..+..|.+++++++. ++.++++|+ |.+++||+..... +.-..+.|.+.|+++.|.+.-.
T Consensus 32 ~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~-------------qlg~ll~HagsitaL~F~~~~S 96 (362)
T KOG0294|consen 32 TLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRK-------------QLGILLSHAGSITALKFYPPLS 96 (362)
T ss_pred eeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchh-------------hhcceeccccceEEEEecCCcc
Confidence 34567889999999999999 579999997 8999998876421 1112234668999999998764
Q ss_pred --EEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEE
Q 015490 181 --IFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASC 258 (406)
Q Consensus 181 --~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 258 (406)
.|++|+.||.|.+|+.....++..+..|...|+.++.+|.+++-++.+.|+.+++||+-.|+.-..+...+. .+.+
T Consensus 97 ~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~--at~v 174 (362)
T KOG0294|consen 97 KSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK--ATLV 174 (362)
T ss_pred hhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCc--ceee
Confidence 899999999999999999999999999999999999999999999999999999999999887766655444 3459
Q ss_pred EEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEe
Q 015490 259 RFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAV 338 (406)
Q Consensus 259 ~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 338 (406)
.|+|.|.+ |++. ....|-+|.+.+-+....+... ..+.++.|- ++..|++|..|+.|.+||.++..+...+
T Consensus 175 ~w~~~Gd~----F~v~---~~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~ 245 (362)
T KOG0294|consen 175 SWSPQGDH----FVVS---GRNKIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEF 245 (362)
T ss_pred EEcCCCCE----EEEE---eccEEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecCCceEEEeccCCCccceee
Confidence 99999986 3332 2567889988876665555543 345666665 5668999999999999999998888888
Q ss_pred ecccccceEEEEE--cCCCCeEEEEECCCcEEEEEecCCcC
Q 015490 339 KKAHLGIVTALAF--SYDSRALVSASMDSSVRVTVIEDKKK 377 (406)
Q Consensus 339 ~~~~~~~v~~~~~--sp~~~~l~s~s~dg~i~iw~~~~~~~ 377 (406)
. +|...|.++.+ .|++.+|+|+|.||.|+|||++...+
T Consensus 246 ~-AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k 285 (362)
T KOG0294|consen 246 L-AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETK 285 (362)
T ss_pred e-cchhheeeeEEEecCCceEEEEeccCceEEEEEcccccc
Confidence 6 99999999984 45788999999999999999987743
No 72
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=2e-28 Score=201.47 Aligned_cols=260 Identities=14% Similarity=0.180 Sum_probs=212.9
Q ss_pred cCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCC
Q 015490 111 TDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENG 189 (406)
Q Consensus 111 ~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 189 (406)
+....+.|..|+|||.+|++|+ |+-+.+|++-. ++..+.+...... ...-+...|.|+.||.|...+|+|+.||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~--GKlrKDLkYQAqd---~fMMmd~aVlci~FSRDsEMlAsGsqDG 285 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTT--GKLRKDLKYQAQD---NFMMMDDAVLCISFSRDSEMLASGSQDG 285 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhcc--chhhhhhhhhhhc---ceeecccceEEEeecccHHHhhccCcCC
Confidence 3456688999999999999998 99999987754 3332222111011 1122457899999999999999999999
Q ss_pred eEEEEeCCCcceEeeee-ccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCce
Q 015490 190 NLRVFKWPSLEIILNES-EAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDY 268 (406)
Q Consensus 190 ~i~vwd~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (406)
.|++|.+++|.+++.+. .|...|+++.|+.|+..+++++.|.++++.-+++|++++.+.+| ...++...|.++|.+
T Consensus 286 kIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGH-sSyvn~a~ft~dG~~-- 362 (508)
T KOG0275|consen 286 KIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGH-SSYVNEATFTDDGHH-- 362 (508)
T ss_pred cEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCc-cccccceEEcCCCCe--
Confidence 99999999999999987 45569999999999999999999999999999999999999876 556889999999986
Q ss_pred EEEEEEEcCCCcEEEEEeCCCceEEEEeeec--CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCceEEEEeecc--cc
Q 015490 269 VLYIAAITDRGASIVTWNTTTWKRIRTKQVV--REPVSSFNVSA-DGKLLAVGTASGDISIIDSSSLQVRTAVKKA--HL 343 (406)
Q Consensus 269 ~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~ 343 (406)
+.+++.||+|++|+..+.+++.+++.. ..+|.++-.-| +...++++...++|+|.++. |+.++.+..+ ..
T Consensus 363 ----iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREg 437 (508)
T KOG0275|consen 363 ----IISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREG 437 (508)
T ss_pred ----EEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccC
Confidence 455678999999999999999888754 35677777777 44678888889999999986 7888887643 23
Q ss_pred cceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCchH
Q 015490 344 GIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLNL 383 (406)
Q Consensus 344 ~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 383 (406)
+...+++.||.|.++.+.+.|+.++-+.+.+|+....+++
T Consensus 438 GdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V 477 (508)
T KOG0275|consen 438 GDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV 477 (508)
T ss_pred CceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec
Confidence 4566788999999999999999999999999887665554
No 73
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.5e-26 Score=184.58 Aligned_cols=200 Identities=19% Similarity=0.256 Sum_probs=172.0
Q ss_pred ccCcEEEEEECCC-CCEEEEeeCCCeEEEEeCCC---cceEeeee-ccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCC
Q 015490 166 NVGQQLALTFDSE-GTIFAAGSENGNLRVFKWPS---LEIILNES-EAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLAS 240 (406)
Q Consensus 166 ~~~~v~~~~~s~~-g~~l~~~~~dg~i~vwd~~~---~~~~~~~~-~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~ 240 (406)
|.+.+..++|+|- |..||+++.|..|++|+... ..+...+. +|...|++++|+|.|++|+++|.|.++.||.-..
T Consensus 13 h~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~ 92 (312)
T KOG0645|consen 13 HKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKED 92 (312)
T ss_pred CCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCC
Confidence 3367999999998 89999999999999999874 33443343 3555999999999999999999999999998765
Q ss_pred C--eeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC---ceEEEEeeecCCCeEEEEEcCCCCEE
Q 015490 241 S--AVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT---WKRIRTKQVVREPVSSFNVSADGKLL 315 (406)
Q Consensus 241 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~---~~~~~~~~~~~~~i~~~~~sp~~~~l 315 (406)
+ +++..+.+| ...+.+++|+++|+ ++++++.|..|.+|.... ..+...++.|...|-.+.|+|...+|
T Consensus 93 ~efecv~~lEGH-EnEVK~Vaws~sG~------~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 93 GEFECVATLEGH-ENEVKCVAWSASGN------YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred CceeEEeeeecc-ccceeEEEEcCCCC------EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 4 566677765 45689999999998 478889999999999874 35678889999999999999999999
Q ss_pred EEEeCCCcEEEEECC---CceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490 316 AVGTASGDISIIDSS---SLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIE 373 (406)
Q Consensus 316 ~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~ 373 (406)
++++.|++|++|+-. ...+..++. +|...|.+++|++.|..|++++.|++|+||...
T Consensus 166 ~S~SYDnTIk~~~~~~dddW~c~~tl~-g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDEDDDDWECVQTLD-GHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred EEeccCCeEEEEeecCCCCeeEEEEec-CccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 999999999999865 456788885 899999999999999999999999999999954
No 74
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=7.5e-28 Score=203.83 Aligned_cols=255 Identities=16% Similarity=0.153 Sum_probs=208.7
Q ss_pred cEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccc
Q 015490 88 AVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN 166 (406)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (406)
.+.+|....+. ...+.++.|..+.|+++.|.+++.++++++ |+.+++|+.+ ......++.+
T Consensus 198 ~Ik~W~v~~~k----~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd--------------~~r~~~TLsG 259 (459)
T KOG0288|consen 198 IIKLWNVLGEK----SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD--------------SLRLRHTLSG 259 (459)
T ss_pred hhhhhhcccch----hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc--------------chhhhhhhcc
Confidence 34444444443 356778889999999999999999888876 9999998877 3334444555
Q ss_pred c-CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee
Q 015490 167 V-GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT 245 (406)
Q Consensus 167 ~-~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~ 245 (406)
| +.|+++.|......+++|+.|.+|++||+....+...+... ..+.+|..+ ...++++-.|++|++||.++..+..
T Consensus 260 HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~-S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~ 336 (459)
T KOG0288|consen 260 HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG-SQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTR 336 (459)
T ss_pred cccceeeehhhccccceeeccccchhhhhhhhhhheecccccc-ccccceEec--ceeeeecccccceEEEeccCCceee
Confidence 5 88999999987777999999999999999998887665443 346667665 4568888899999999999999988
Q ss_pred ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC----CCeEEEEEcCCCCEEEEEeCC
Q 015490 246 PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR----EPVSSFNVSADGKLLAVGTAS 321 (406)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~----~~i~~~~~sp~~~~l~~~~~d 321 (406)
..+.+. .++++..++++.. + .+.+.|..+.+.|+++......+.... ...+.+.|||++.|+++|+.|
T Consensus 337 sv~~gg--~vtSl~ls~~g~~-----l-LsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~d 408 (459)
T KOG0288|consen 337 SVPLGG--RVTSLDLSMDGLE-----L-LSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSAD 408 (459)
T ss_pred EeecCc--ceeeEeeccCCeE-----E-eeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCC
Confidence 887553 6999999999986 3 344789999999999988877776542 457899999999999999999
Q ss_pred CcEEEEECCCceEEEEeeccccc-ceEEEEEcCCCCeEEEEECCCcEEEEE
Q 015490 322 GDISIIDSSSLQVRTAVKKAHLG-IVTALAFSYDSRALVSASMDSSVRVTV 371 (406)
Q Consensus 322 g~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~s~s~dg~i~iw~ 371 (406)
|.|+||++.++++...+...+.. .|++++|+|.|..|++++.++.+.+|.
T Consensus 409 gsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 409 GSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99999999999999888754544 699999999999999999999999993
No 75
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=8.5e-27 Score=200.13 Aligned_cols=260 Identities=17% Similarity=0.216 Sum_probs=210.6
Q ss_pred eeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeeccee-----ccceeeecc--cccCcEEEEEECC
Q 015490 106 VAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVK-----ISEKVLSQL--ENVGQQLALTFDS 177 (406)
Q Consensus 106 ~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~--~~~~~v~~~~~s~ 177 (406)
...+..|..+|.+++++|++.+.++++ ++ .|-.|+..++...+.+.-. ......+.- .|...+.+++.|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g--~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~ 212 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDG--TILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS 212 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCc--ceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC
Confidence 677889999999999999999999887 55 4555665555533221111 011222222 3457899999999
Q ss_pred CCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEE
Q 015490 178 EGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFAS 257 (406)
Q Consensus 178 ~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 257 (406)
||++||+|+.|..|.||+.++.+.+..+.+|.+.|.+++|-.....+++++.|+++++|++.....+.++.+|++ .|..
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd-~v~~ 291 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQD-GVLG 291 (479)
T ss_pred CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcc-ceee
Confidence 999999999999999999999999999999999999999988888899999999999999998888888877655 4556
Q ss_pred EEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEE
Q 015490 258 CRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTA 337 (406)
Q Consensus 258 ~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~ 337 (406)
+.-...++ ++..++.|+++++|++.. .....+.++.+.+.|++|-.+ ..+++|+.+|.|.+|++.+.+++.+
T Consensus 292 IdaL~reR------~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~ 363 (479)
T KOG0299|consen 292 IDALSRER------CVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFT 363 (479)
T ss_pred echhcccc------eEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeE
Confidence 76666665 567778999999999954 344556777888999999755 5788999999999999999998887
Q ss_pred eecccc-----------cceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490 338 VKKAHL-----------GIVTALAFSYDSRALVSASMDSSVRVTVIEDKK 376 (406)
Q Consensus 338 ~~~~~~-----------~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~ 376 (406)
....|. .+|++++..|...++++|+.+|.|++|.++++-
T Consensus 364 ~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 364 SRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGL 413 (479)
T ss_pred eeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCc
Confidence 764442 278999999999999999999999999999883
No 76
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=3.1e-28 Score=206.14 Aligned_cols=256 Identities=18% Similarity=0.191 Sum_probs=214.0
Q ss_pred cccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCC
Q 015490 102 SDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEG 179 (406)
Q Consensus 102 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g 179 (406)
+......+..|.+.|..+.|-++...|++++ |..+++|+...... ....++.+. ++++.+.|.+++
T Consensus 164 pS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~------------~~~~tLaGs~g~it~~d~d~~~ 231 (459)
T KOG0288|consen 164 PSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS------------ELISTLAGSLGNITSIDFDSDN 231 (459)
T ss_pred chhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchh------------hhhhhhhccCCCcceeeecCCC
Confidence 3456677889999999999999988899987 99999988775432 233344444 789999999999
Q ss_pred CEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEE
Q 015490 180 TIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCR 259 (406)
Q Consensus 180 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 259 (406)
+.+++++.|+.+++|++...+...++.+|.+.|+++.|......+++++.|.+|++||+....+.+++.... .+..+.
T Consensus 232 ~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S--~cnDI~ 309 (459)
T KOG0288|consen 232 KHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGS--QCNDIV 309 (459)
T ss_pred ceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccc--cccceE
Confidence 999999999999999999999999999999999999998877779999999999999999988887665332 233444
Q ss_pred EEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee
Q 015490 260 FSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK 339 (406)
Q Consensus 260 ~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 339 (406)
.++ ....++..|++|++||.++..+......+ +.|+++..+++|..|.+++.|.++.+.|+++.+....+.
T Consensus 310 ~~~--------~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~s 380 (459)
T KOG0288|consen 310 CSI--------SDVISGHFDKKVRFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFS 380 (459)
T ss_pred ecc--------eeeeecccccceEEEeccCCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEee
Confidence 442 14577888999999999999999988877 489999999999999999999999999999988877764
Q ss_pred c---ccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCC
Q 015490 340 K---AHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGG 380 (406)
Q Consensus 340 ~---~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~ 380 (406)
. -.....+.+.|||++.|+++||.||.|+||++.+++....
T Consensus 381 A~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~ 424 (459)
T KOG0288|consen 381 AEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKV 424 (459)
T ss_pred ccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEE
Confidence 1 0122378999999999999999999999999999886443
No 77
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=5.9e-27 Score=203.71 Aligned_cols=275 Identities=16% Similarity=0.219 Sum_probs=194.4
Q ss_pred cCccEEEEEEecCCCCccccceeEEe-cCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeee
Q 015490 85 IRNAVLLSHFDFASNSLSDQPVAELR-TDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLS 162 (406)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 162 (406)
+.+.+.+|.+.. ..-+.+..+.+. .....|.+++|++.|..|++.+ ....+|++-+... ...... ..+.+.
T Consensus 187 ~Dy~v~~wDf~g--Mdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~--~~e~~K---GDQYI~ 259 (641)
T KOG0772|consen 187 LDYTVKFWDFQG--MDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFE--IVEFSK---GDQYIR 259 (641)
T ss_pred ccceEEEEeccc--ccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCce--eeeeec---cchhhh
Confidence 344445544443 322223333333 2346789999999999877765 6666776544321 111111 111111
Q ss_pred ----cccccCcEEEEEECCCC-CEEEEeeCCCeEEEEeCCCcceEeeeecc------CCceeEEEEccCCCEEEEEeCCC
Q 015490 163 ----QLENVGQQLALTFDSEG-TIFAAGSENGNLRVFKWPSLEIILNESEA------HASVKDLSFSPDGKFLVSLGNRG 231 (406)
Q Consensus 163 ----~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------~~~i~~~~~s~~~~~l~s~s~d~ 231 (406)
+-.|...++|.+|+|+. ..|++++.||++++||+++.+....+..+ .-.++.++|++||+.||+|..||
T Consensus 260 Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG 339 (641)
T KOG0772|consen 260 DMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDG 339 (641)
T ss_pred hhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCC
Confidence 12233779999999965 67889999999999999765533222221 12789999999999999999999
Q ss_pred CEEEEEcCCCe--eeeecccCCc--ceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce-EEEEeeec--CCCeE
Q 015490 232 PGRVWDLASSA--VATPLAKEND--ELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK-RIRTKQVV--REPVS 304 (406)
Q Consensus 232 ~i~iwd~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~--~~~i~ 304 (406)
.|.+|+..+.. +...+...|. ..++++.|+++|+. +++.+.|+.+++||++..+ ++....+- ..+-+
T Consensus 340 SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~------LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~t 413 (641)
T KOG0772|consen 340 SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNY------LLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGT 413 (641)
T ss_pred ceeeeecCCcccccceEeeeccCCCCceeEEEeccccch------hhhccCCCceeeeeccccccchhhhcCCCccCCCC
Confidence 99999985532 2223333333 36999999999994 6778899999999998765 34443332 24557
Q ss_pred EEEEcCCCCEEEEEeC------CCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490 305 SFNVSADGKLLAVGTA------SGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIE 373 (406)
Q Consensus 305 ~~~~sp~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~ 373 (406)
.++|||+.++|++|+. .|.+.+||..+...+..+. .....|..+.|+|.-+.++.|+.||++++|-=.
T Consensus 414 dc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~-i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 414 DCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID-ISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred ccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEec-CCCceEEEEeecchhhheeeecCCCceEEEECc
Confidence 8999999999999865 4679999999999999886 567789999999988889999999999998543
No 78
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=1.6e-25 Score=208.82 Aligned_cols=240 Identities=10% Similarity=0.129 Sum_probs=172.8
Q ss_pred cceeEEecCCCCceEEEEccC-CCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCC
Q 015490 104 QPVAELRTDSDLPYRMAIHPH-GDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGT 180 (406)
Q Consensus 104 ~~~~~~~~h~~~v~~~~~sp~-~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~ 180 (406)
.++..+.+|.+.|.+++|+|+ +..|++++ |+.++||++..... .... ....+..+. |...|.+++|+|++.
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~-~~~~-----i~~p~~~L~gH~~~V~sVaf~P~g~ 138 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDE-SVKE-----IKDPQCILKGHKKKISIIDWNPMNY 138 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCc-cccc-----cccceEEeecCCCcEEEEEECCCCC
Confidence 467889999999999999997 67888887 89999987753211 0000 011122233 447899999999987
Q ss_pred E-EEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceE----
Q 015490 181 I-FAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELF---- 255 (406)
Q Consensus 181 ~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~---- 255 (406)
. |++++.|++|++||+++++....+. +...|.+++|+|+|++|++++.|+.|+|||+++++.+..+..|.+...
T Consensus 139 ~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v 217 (568)
T PTZ00420 139 YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNI 217 (568)
T ss_pred eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEE
Confidence 5 5789999999999999988776654 556899999999999999999999999999999999888877654322
Q ss_pred EEEEEEcCCCCceEEEEEEEcCCC---cEEEEEeCCC-ceEEEEeeecC--CCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 015490 256 ASCRFSPLNNEDYVLYIAAITDRG---ASIVTWNTTT-WKRIRTKQVVR--EPVSSFNVSADGKLLAVGTASGDISIIDS 329 (406)
Q Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~~~---~~i~~~d~~~-~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~ 329 (406)
....|++++.. +++++..+ +.|++||+++ .+++.....+. +.+......++|.++++|+.|+.|++|++
T Consensus 218 ~~~~fs~d~~~-----IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 218 WIDGLGGDDNY-----ILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQH 292 (568)
T ss_pred EeeeEcCCCCE-----EEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEc
Confidence 22334577663 33333332 5899999985 45555544332 33333334556889999999999999999
Q ss_pred CCceEEEEeecccccceEEEEEcCCC
Q 015490 330 SSLQVRTAVKKAHLGIVTALAFSYDS 355 (406)
Q Consensus 330 ~~~~~~~~~~~~~~~~v~~~~~sp~~ 355 (406)
..+.....-...+..+..+++|.|..
T Consensus 293 ~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 293 SLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred cCCcEEeecccccCCCccceEEcccc
Confidence 87643222111356778899999963
No 79
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=2e-26 Score=197.80 Aligned_cols=257 Identities=14% Similarity=0.210 Sum_probs=195.0
Q ss_pred EEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCC-CEEEE
Q 015490 108 ELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEG-TIFAA 184 (406)
Q Consensus 108 ~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~ 184 (406)
..-.|.+.|+.+...|....++++. ++.+.||++..........-.. ...++-..|+..-..++|++.. -.|++
T Consensus 119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~---~Pdl~L~gH~~eg~glsWn~~~~g~Lls 195 (422)
T KOG0264|consen 119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGEC---RPDLRLKGHEKEGYGLSWNRQQEGTLLS 195 (422)
T ss_pred EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccC---CCceEEEeecccccccccccccceeEee
Confidence 3356999999999999999888865 6677777665433222110011 1111222233447789999854 57889
Q ss_pred eeCCCeEEEEeCCCcc-------eEeeeeccCCceeEEEEccC-CCEEEEEeCCCCEEEEEcCC--CeeeeecccCCcce
Q 015490 185 GSENGNLRVFKWPSLE-------IILNESEAHASVKDLSFSPD-GKFLVSLGNRGPGRVWDLAS--SAVATPLAKENDEL 254 (406)
Q Consensus 185 ~~~dg~i~vwd~~~~~-------~~~~~~~~~~~i~~~~~s~~-~~~l~s~s~d~~i~iwd~~~--~~~~~~~~~~~~~~ 254 (406)
++.|++|++||+.... ....+.+|...|.+++|++- ...|++++.|+.+.|||+++ .+...... .+...
T Consensus 196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~-ah~~~ 274 (422)
T KOG0264|consen 196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK-AHSAE 274 (422)
T ss_pred ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc-ccCCc
Confidence 9999999999996432 23456678889999999984 45788999999999999995 33333333 45667
Q ss_pred EEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce-EEEEeeecCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCc
Q 015490 255 FASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK-RIRTKQVVREPVSSFNVSAD-GKLLAVGTASGDISIIDSSSL 332 (406)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~i~~~~~sp~-~~~l~~~~~dg~i~i~d~~~~ 332 (406)
+.|++|+|.+.. ++|+++.|++|.+||+|+.+ ++.++..|...|.++.|||. ...||+++.|+.+.+||+..-
T Consensus 275 vn~~~fnp~~~~-----ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~i 349 (422)
T KOG0264|consen 275 VNCVAFNPFNEF-----ILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRI 349 (422)
T ss_pred eeEEEeCCCCCc-----eEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccc
Confidence 999999999985 88999999999999998754 68889999999999999995 468888899999999999642
Q ss_pred eEE-------------EEeecccccceEEEEEcCCCCe-EEEEECCCcEEEEEec
Q 015490 333 QVR-------------TAVKKAHLGIVTALAFSYDSRA-LVSASMDSSVRVTVIE 373 (406)
Q Consensus 333 ~~~-------------~~~~~~~~~~v~~~~~sp~~~~-l~s~s~dg~i~iw~~~ 373 (406)
... .-...||...|..+.|+|+..+ ++|++.|+.+.||+..
T Consensus 350 g~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 350 GEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 211 1223589999999999998655 6788999999999987
No 80
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=9.1e-26 Score=210.36 Aligned_cols=202 Identities=13% Similarity=0.119 Sum_probs=158.7
Q ss_pred ccCcEEEEEECCC-CCEEEEeeCCCeEEEEeCCCcc--------eEeeeeccCCceeEEEEccCCCE-EEEEeCCCCEEE
Q 015490 166 NVGQQLALTFDSE-GTIFAAGSENGNLRVFKWPSLE--------IILNESEAHASVKDLSFSPDGKF-LVSLGNRGPGRV 235 (406)
Q Consensus 166 ~~~~v~~~~~s~~-g~~l~~~~~dg~i~vwd~~~~~--------~~~~~~~~~~~i~~~~~s~~~~~-l~s~s~d~~i~i 235 (406)
|.+.|.+++|+|+ +.+|++|+.|++|++||+.++. ....+.+|...|.+++|+|++.. |++++.|++|++
T Consensus 73 H~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrI 152 (568)
T PTZ00420 73 HTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNI 152 (568)
T ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEE
Confidence 4478999999996 7899999999999999997642 23345677779999999999875 568899999999
Q ss_pred EEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEE-----EEEcC
Q 015490 236 WDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSS-----FNVSA 310 (406)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~-----~~~sp 310 (406)
||+++++....+. +...+.+++|+|++.. +++++.|+.|++||+++++.+.++.+|.+.+.+ ..|++
T Consensus 153 WDl~tg~~~~~i~--~~~~V~SlswspdG~l------Lat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~ 224 (568)
T PTZ00420 153 WDIENEKRAFQIN--MPKKLSSLKWNIKGNL------LSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGG 224 (568)
T ss_pred EECCCCcEEEEEe--cCCcEEEEEECCCCCE------EEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcC
Confidence 9999988776664 2356899999999983 455678999999999999999999988765433 33568
Q ss_pred CCCEEEEEeCCC----cEEEEECCC-ceEEEEee-cccccceEEEEEcCCCCeEEEEECCCcEEEEEecCC
Q 015490 311 DGKLLAVGTASG----DISIIDSSS-LQVRTAVK-KAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDK 375 (406)
Q Consensus 311 ~~~~l~~~~~dg----~i~i~d~~~-~~~~~~~~-~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~ 375 (406)
++.+|++++.|+ .|+|||+++ .+++..+. ..+.+.+......++|.++++|+.|++|++|++..+
T Consensus 225 d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 225 DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 999999887764 799999985 55555543 122333333444556889999999999999999765
No 81
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=5.8e-27 Score=220.81 Aligned_cols=260 Identities=17% Similarity=0.273 Sum_probs=207.4
Q ss_pred cCCCCceEEEEccCCCeEEEEe---cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC
Q 015490 111 TDSDLPYRMAIHPHGDGIICAL---QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE 187 (406)
Q Consensus 111 ~h~~~v~~~~~sp~~~~l~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 187 (406)
.++..|.+++.+|+|..+++|+ |+.++||..+.-..+.. ...........+...|.+.|+|+.|+|||++||+|++
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~-~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKE-EKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD 89 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhh-hhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence 4456789999999999999987 77778887654321110 0000002222333445689999999999999999999
Q ss_pred CCeEEEEeCCC------------------cceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeeccc
Q 015490 188 NGNLRVFKWPS------------------LEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAK 249 (406)
Q Consensus 188 dg~i~vwd~~~------------------~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 249 (406)
|+.|.||.... .+....+.+|...|.+++|+|++.+|++++.|++|.|||.++.+.+..+..
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeec
Confidence 99999998752 225667788888999999999999999999999999999999988888887
Q ss_pred CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeec------CCCeEEEEEcCCCCEEEEEeC---
Q 015490 250 ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVV------REPVSSFNVSADGKLLAVGTA--- 320 (406)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~------~~~i~~~~~sp~~~~l~~~~~--- 320 (406)
|+ ..|..+.|.|-|++ +++-++|++|++|++.++...+.+..+ ...+..+.|||||++|++...
T Consensus 170 H~-s~VKGvs~DP~Gky------~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~ 242 (942)
T KOG0973|consen 170 HQ-SLVKGVSWDPIGKY------FASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNG 242 (942)
T ss_pred cc-ccccceEECCccCe------eeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccC
Confidence 65 45789999999994 677789999999998887777776554 235789999999999998754
Q ss_pred -CCcEEEEECCCceEEEEeecccccceEEEEEcCC-----CC------------eEEEEECCCcEEEEEecCCcCCC
Q 015490 321 -SGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYD-----SR------------ALVSASMDSSVRVTVIEDKKKSG 379 (406)
Q Consensus 321 -dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~-----~~------------~l~s~s~dg~i~iw~~~~~~~~~ 379 (406)
-..+.|.+..+.+.-..+. +|.+++.++.|+|. .. .+|+||.|++|.||.....+++-
T Consensus 243 ~~~~~~IieR~tWk~~~~Lv-GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 243 GKSTIAIIERGTWKVDKDLV-GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred CcceeEEEecCCceeeeeee-cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 3468999998888888886 99999999999982 11 57899999999999998887743
No 82
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=1.8e-26 Score=196.72 Aligned_cols=248 Identities=20% Similarity=0.271 Sum_probs=209.0
Q ss_pred cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEE
Q 015490 104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIF 182 (406)
Q Consensus 104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 182 (406)
+.+..+.||+..|+.+.++|+...+++++ +..++||...... .......|..+|+.+..+|.|.||
T Consensus 252 q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-------------~~~~~~~h~~~V~~ls~h~tgeYl 318 (506)
T KOG0289|consen 252 QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-------------EPTSSRPHEEPVTGLSLHPTGEYL 318 (506)
T ss_pred hhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-------------CccccccccccceeeeeccCCcEE
Confidence 47889999999999999999999888876 7777887655422 122223366899999999999999
Q ss_pred EEeeCCCeEEEEeCCCcceEeeeeccCC--ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEE
Q 015490 183 AAGSENGNLRVFKWPSLEIILNESEAHA--SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRF 260 (406)
Q Consensus 183 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 260 (406)
++++.|++..+.|++++..+........ .+++.+|+|||..|.+|..|+.++|||+.++.....+.+ |..+|..++|
T Consensus 319 lsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpg-ht~~vk~i~F 397 (506)
T KOG0289|consen 319 LSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG-HTGPVKAISF 397 (506)
T ss_pred EEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCC-CCCceeEEEe
Confidence 9999999999999999998876655322 799999999999999999999999999999998899987 5678999999
Q ss_pred EcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC-CCeEEEEEcCCCCEEEEEeCCCcEEEEECC--CceEEEE
Q 015490 261 SPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR-EPVSSFNVSADGKLLAVGTASGDISIIDSS--SLQVRTA 337 (406)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~--~~~~~~~ 337 (406)
+.+| |+++++.+|+.|++||+|..+...++.... ..+.+++|.+.|.+|+.++.|=.|++++-. ++..+..
T Consensus 398 sENG------Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 398 SENG------YWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKE 471 (506)
T ss_pred ccCc------eEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeeh
Confidence 9998 467777889999999999988888777654 468999999999999999877667777633 4666666
Q ss_pred eecccccceEEEEEcCCCCeEEEEECCCcEEEEEe
Q 015490 338 VKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVI 372 (406)
Q Consensus 338 ~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~ 372 (406)
+. .|.+..+++.|....++++++|.|..++++.+
T Consensus 472 ~~-~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 472 LA-DHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred hh-hcccccceeeecccceEEeeccchhheEEeec
Confidence 64 78889999999999999999999999888764
No 83
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=1.6e-26 Score=196.98 Aligned_cols=238 Identities=20% Similarity=0.270 Sum_probs=207.0
Q ss_pred CCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCEEEEeeCCCeE
Q 015490 114 DLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGSENGNL 191 (406)
Q Consensus 114 ~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i 191 (406)
..+.++...|....+++|+ |....+++.. ..+.+..+.++ ..|+.+.|+|+...+++++.|..|
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~--------------s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i 285 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKP--------------SNQILATLKGHTKKITSVKFHKDLDTVITASADEII 285 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecc--------------hhhhhhhccCcceEEEEEEeccchhheeecCCcceE
Confidence 5678888888877888888 7688887655 44556666666 679999999999999999999999
Q ss_pred EEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccC-CcceEEEEEEEcCCCCceEE
Q 015490 192 RVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKE-NDELFASCRFSPLNNEDYVL 270 (406)
Q Consensus 192 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l 270 (406)
+||.............|..+|+.+..+|.|.||++++.|++..+.|++++..+...... .+-.+++.+|+|||-
T Consensus 286 ~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL----- 360 (506)
T KOG0289|consen 286 RVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL----- 360 (506)
T ss_pred EeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-----
Confidence 99999887777778888889999999999999999999999999999999988776543 345588999999995
Q ss_pred EEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEE
Q 015490 271 YIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALA 350 (406)
Q Consensus 271 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 350 (406)
+++++..|+.|++||+.++..+..|.+|.++|..++|+.+|-||+++++|+.|++||++..+...++.......+.++.
T Consensus 361 -ifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~ 439 (506)
T KOG0289|consen 361 -IFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLS 439 (506)
T ss_pred -EEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEE
Confidence 6788899999999999999999999999999999999999999999999999999999998887777644555799999
Q ss_pred EcCCCCeEEEEECCCcEEEEE
Q 015490 351 FSYDSRALVSASMDSSVRVTV 371 (406)
Q Consensus 351 ~sp~~~~l~s~s~dg~i~iw~ 371 (406)
|.+.|.+|+.++.|=+|++++
T Consensus 440 fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 440 FDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred EcCCCCeEEeecceeEEEEEe
Confidence 999999999997775555555
No 84
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.3e-24 Score=178.71 Aligned_cols=271 Identities=14% Similarity=0.153 Sum_probs=206.9
Q ss_pred CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe---cCCeEEEEEecc
Q 015490 68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL---QNSCRLFEWDEV 144 (406)
Q Consensus 68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~---~~~~~i~~~~~~ 144 (406)
++.+++++.. .+.+.++.... ...+.++..+.-.|..+.|......++.++ |.+++...+.
T Consensus 25 ~G~~litss~--------dDsl~LYd~~~------g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~-- 88 (311)
T KOG1446|consen 25 DGLLLITSSE--------DDSLRLYDSLS------GKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH-- 88 (311)
T ss_pred CCCEEEEecC--------CCeEEEEEcCC------CceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee--
Confidence 6666666432 22445554333 347788888888999999987777666664 6677775554
Q ss_pred cccceeecceeccceeeeccccc-CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCE
Q 015490 145 ENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKF 223 (406)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 223 (406)
..+.++.+.+| ..|+.++.+|-+..+++++.|++|++||++..++...+..... ..++|.|+|-.
T Consensus 89 ------------dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLi 154 (311)
T KOG1446|consen 89 ------------DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLI 154 (311)
T ss_pred ------------cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcE
Confidence 55666667766 7899999999999999999999999999998777665544333 45899999999
Q ss_pred EEEEeCCCCEEEEEcCCC--eeeee--cccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeec
Q 015490 224 LVSLGNRGPGRVWDLASS--AVATP--LAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVV 299 (406)
Q Consensus 224 l~s~s~d~~i~iwd~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 299 (406)
+|++.....|++||++.- .+... +..........+.|+|+|+. + ..+...+.+++.|.-+|....++..+
T Consensus 155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~-----i-LlsT~~s~~~~lDAf~G~~~~tfs~~ 228 (311)
T KOG1446|consen 155 FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKS-----I-LLSTNASFIYLLDAFDGTVKSTFSGY 228 (311)
T ss_pred EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCE-----E-EEEeCCCcEEEEEccCCcEeeeEeec
Confidence 999988889999999864 22222 23233456789999999995 2 23356788999999999998888877
Q ss_pred CCCe---EEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490 300 REPV---SSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKK 376 (406)
Q Consensus 300 ~~~i---~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~ 376 (406)
...- ...+|+||++++++|+.||+|.+|+++++..+..+...+.+++.++.|.|.-.+++++ +..+.+|=....+
T Consensus 229 ~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 229 PNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDEDA 306 (311)
T ss_pred cCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEeccccc
Confidence 5332 5788999999999999999999999999999999974478999999999976555554 5678888765443
No 85
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.2e-27 Score=199.58 Aligned_cols=262 Identities=13% Similarity=0.198 Sum_probs=212.0
Q ss_pred EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCc
Q 015490 90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQ 169 (406)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (406)
.+..|+... .....++..|.+.|..+++.. +..+.+|.|.+++.|.++.. +..++.+...
T Consensus 90 ~VkiWnlsq----R~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~---------------p~~tilg~s~ 149 (433)
T KOG0268|consen 90 EVKIWNLSQ----RECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGP---------------PLHTILGKSV 149 (433)
T ss_pred eEEEEehhh----hhhhheeecccCceeeEEecc-cceEEecCCcceeeeeccCC---------------cceeeecccc
Confidence 456666655 347889999999999999987 55555555999999988752 3344555666
Q ss_pred EEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCC-EEEEEeCCCCEEEEEcCCCeeeeecc
Q 015490 170 QLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGK-FLVSLGNRGPGRVWDLASSAVATPLA 248 (406)
Q Consensus 170 v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~ 248 (406)
+..+.-+..+..+++++. .|.|||.+...++..+.-..+.|.++.|+|-.. .|++++.|+.|.+||++++.+++.+.
T Consensus 150 ~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi 227 (433)
T KOG0268|consen 150 YLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI 227 (433)
T ss_pred ccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee
Confidence 777777777788999876 599999988888888888888999999999655 67777799999999999999888765
Q ss_pred cCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc-eEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 015490 249 KENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW-KRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISII 327 (406)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~ 327 (406)
... ....++|+|.. |..+++++|..++.+|++.. .++.....|.+.|.++.|||.|+-+++|+.|.+|+||
T Consensus 228 ~~m--RTN~IswnPea------fnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf 299 (433)
T KOG0268|consen 228 LTM--RTNTICWNPEA------FNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIF 299 (433)
T ss_pred eec--cccceecCccc------cceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEe
Confidence 432 24579999944 35677899999999999865 4677788899999999999999999999999999999
Q ss_pred ECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490 328 DSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL 381 (406)
Q Consensus 328 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~ 381 (406)
..+.+.....+..--...|.++.||-|.+++++||.|+.|++|.-...++++.+
T Consensus 300 ~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~ 353 (433)
T KOG0268|consen 300 PVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVI 353 (433)
T ss_pred ecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCC
Confidence 998776655443233456999999999999999999999999999877776654
No 86
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=1.6e-26 Score=193.95 Aligned_cols=245 Identities=19% Similarity=0.251 Sum_probs=194.0
Q ss_pred cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCC---
Q 015490 104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSE--- 178 (406)
Q Consensus 104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~--- 178 (406)
+++..+ .|.+.|.++... ++++++|+ |+.+++|+... +....+. |.+++.+++|-..
T Consensus 97 ~pl~~~-~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G---------------k~~~~~~Ght~~ik~v~~v~~n~~ 158 (423)
T KOG0313|consen 97 KPLQCF-LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG---------------KSIKTIVGHTGPIKSVAWVIKNSS 158 (423)
T ss_pred Cccccc-cchhhhhhhccc--CceEEEeecCCeeEEEecCC---------------ceEEEEecCCcceeeeEEEecCCc
Confidence 344333 589999999987 68899987 99999987542 2233333 4578887777442
Q ss_pred CCEEEEeeCCCeEEEEeCCCcceE----eeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCC--------------
Q 015490 179 GTIFAAGSENGNLRVFKWPSLEII----LNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLAS-------------- 240 (406)
Q Consensus 179 g~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~-------------- 240 (406)
...|++++.|.++++|.++.++.. ..-.+|...|.++...++|..+++++.|..+.||+..+
T Consensus 159 ~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rr 238 (423)
T KOG0313|consen 159 SCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRR 238 (423)
T ss_pred cceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhh
Confidence 346999999999999999876533 22347888999999999999999999999999999321
Q ss_pred -----------CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEc
Q 015490 241 -----------SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVS 309 (406)
Q Consensus 241 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~s 309 (406)
+.++..+. .|...|.++.|++.+ .+.+++.|.+|+.||+.++....++... ..+.++..+
T Consensus 239 k~~~~~~~~~~r~P~vtl~-GHt~~Vs~V~w~d~~-------v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~ 309 (423)
T KOG0313|consen 239 KKQKREKEGGTRTPLVTLE-GHTEPVSSVVWSDAT-------VIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYS 309 (423)
T ss_pred hhhhhhhcccccCceEEec-ccccceeeEEEcCCC-------ceEeecccceEEEEEeecccceeeeecC-cceeEeecc
Confidence 11222333 456678999999944 4577789999999999999998888765 578999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCce--E-EEEeecccccceEEEEEcCCC-CeEEEEECCCcEEEEEecCCc
Q 015490 310 ADGKLLAVGTASGDISIIDSSSLQ--V-RTAVKKAHLGIVTALAFSYDS-RALVSASMDSSVRVTVIEDKK 376 (406)
Q Consensus 310 p~~~~l~~~~~dg~i~i~d~~~~~--~-~~~~~~~~~~~v~~~~~sp~~-~~l~s~s~dg~i~iw~~~~~~ 376 (406)
|..++|++|+.|..+++||.+++. . ..++ .+|...|.++.|+|.. ..|++++.|+++++||+++.+
T Consensus 310 ~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~-~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 310 PLSKLLASGSSDRHIRLWDPRTGDGSVVSQSL-IGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred cccceeeecCCCCceeecCCCCCCCceeEEee-ecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 999999999999999999998743 3 3445 4999999999999965 457899999999999999877
No 87
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=5.4e-27 Score=191.86 Aligned_cols=270 Identities=14% Similarity=0.224 Sum_probs=206.7
Q ss_pred ceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccc-eeecc---eeccceeeeccccc-CcEEEEEECCC
Q 015490 105 PVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTE-IRRLG---VKISEKVLSQLENV-GQQLALTFDSE 178 (406)
Q Consensus 105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~-~~v~~~~~s~~ 178 (406)
....+..|..++.+.+|+|||.++++|+ |.+++|++....-.+. ...+. .......++++-.| ++|+++.|+|.
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 4557889999999999999999999998 9999998776321111 11110 01122455665544 89999999999
Q ss_pred CCEEEEeeCCCeEEEEeCCCcceE--eeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecc--cCCcce
Q 015490 179 GTIFAAGSENGNLRVFKWPSLEII--LNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLA--KENDEL 254 (406)
Q Consensus 179 g~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~~~~~~ 254 (406)
...|++|+.|++|++||+...... .+......+|.++.|+|.|.+|+.|....++++||+++-++...-. ..+...
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a 263 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA 263 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence 999999999999999999654322 2233334489999999999999999999999999999988765443 245667
Q ss_pred EEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeee-c-CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc
Q 015490 255 FASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV-V-REPVSSFNVSADGKLLAVGTASGDISIIDSSSL 332 (406)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~-~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~ 332 (406)
|+++.+++.++ +.++++.||.|++||--+.+++.++.. | ...|.+..|..+|+|+++.+.|..+++|.+.++
T Consensus 264 i~~V~Ys~t~~------lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 264 ITQVRYSSTGS------LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred eeEEEecCCcc------EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence 99999999998 456778999999999999999888753 3 367999999999999999999999999999999
Q ss_pred eEEEEeeccc--ccc---eEEEEEcCCCCeEEEEE-CCCcEEEEEecCCcCCCCc
Q 015490 333 QVRTAVKKAH--LGI---VTALAFSYDSRALVSAS-MDSSVRVTVIEDKKKSGGL 381 (406)
Q Consensus 333 ~~~~~~~~~~--~~~---v~~~~~sp~~~~l~s~s-~dg~i~iw~~~~~~~~~~~ 381 (406)
+.+..+. +. .+. -+...|.....+++.-. ..+.+.-||-++..++..+
T Consensus 338 R~l~~Yt-GAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~ 391 (430)
T KOG0640|consen 338 RMLKEYT-GAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALL 391 (430)
T ss_pred ceEEEEe-cCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhc
Confidence 9998886 22 111 23455666666666543 3467888999888775443
No 88
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=2.5e-25 Score=177.94 Aligned_cols=258 Identities=16% Similarity=0.215 Sum_probs=208.9
Q ss_pred cEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCC-eEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc
Q 015490 88 AVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGD-GIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE 165 (406)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (406)
...++.++... ...-...++|.+.|-.++|+|... .+++++ |..+++|+.. ..++.....
T Consensus 43 tv~v~n~e~~r----~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r--------------~~k~~~~i~ 104 (313)
T KOG1407|consen 43 TVSVWNLERDR----FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR--------------SGKCTARIE 104 (313)
T ss_pred ceEEEEecchh----hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec--------------cCcEEEEee
Confidence 44556655542 123345789999999999998765 444443 8888887765 333344444
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee
Q 015490 166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT 245 (406)
Q Consensus 166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~ 245 (406)
..+.-.-+.|+|+|+++++++.|..|...|.++.+..... .....+..++|+.++.+++..+..|.|.|....+.+++.
T Consensus 105 ~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~-~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~ 183 (313)
T KOG1407|consen 105 TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE-QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQ 183 (313)
T ss_pred ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehh-cccceeeeeeecCCCCEEEEecCCceEEEEecccccccc
Confidence 4444556899999999999999999999999887766443 233368889999888888877878999999999999999
Q ss_pred ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 015490 246 PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDIS 325 (406)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~ 325 (406)
.+..|.. ...|+.|+|+|++ +++|+.|..+.+||+...-+++.+..+.-+|..++||.||++||+|++|..|-
T Consensus 184 si~AH~s-nCicI~f~p~Gry------fA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~ID 256 (313)
T KOG1407|consen 184 SIKAHPS-NCICIEFDPDGRY------FATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFID 256 (313)
T ss_pred ccccCCc-ceEEEEECCCCce------EeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEE
Confidence 9998764 4669999999995 68889999999999999999999999999999999999999999999999999
Q ss_pred EEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECC---------CcEEEEEec
Q 015490 326 IIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMD---------SSVRVTVIE 373 (406)
Q Consensus 326 i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d---------g~i~iw~~~ 373 (406)
|=++++|..+..++ +.++...++|+|...+||-++.| |.|+++-+.
T Consensus 257 IA~vetGd~~~eI~--~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 257 IAEVETGDRVWEIP--CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred eEecccCCeEEEee--ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 99999999999996 89999999999999988877654 466666543
No 89
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=7.1e-26 Score=210.39 Aligned_cols=256 Identities=20% Similarity=0.238 Sum_probs=212.3
Q ss_pred EEEecCCCCccccceeE-EecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-C
Q 015490 92 SHFDFASNSLSDQPVAE-LRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-G 168 (406)
Q Consensus 92 ~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 168 (406)
..|+... ...+.. +.+|.+.|.++++..-+..+++|+ |.++++|+.. .+.+...+.++ .
T Consensus 231 ~~~~~~~----~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~--------------sg~C~~~l~gh~s 292 (537)
T KOG0274|consen 231 HLWDLNN----GYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCS--------------TGECTHSLQGHTS 292 (537)
T ss_pred EEeeccc----ceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecC--------------CCcEEEEecCCCc
Confidence 4455443 234445 999999999999988778888888 9999998844 44555555555 6
Q ss_pred cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecc
Q 015490 169 QQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLA 248 (406)
Q Consensus 169 ~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 248 (406)
.+.++... ..++++|+.|.+|++|+++++..+..+.+|..+|+++..+ +.++++|+.|++|++||+.+++++..+.
T Consensus 293 tv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~ 368 (537)
T KOG0274|consen 293 SVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLS 368 (537)
T ss_pred eEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeec
Confidence 67776664 4578889999999999999999998888888899999997 7799999999999999999999999999
Q ss_pred cCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc-eEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 015490 249 KENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW-KRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISII 327 (406)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~ 327 (406)
+ |...|.++.+.+. . .+.+++.|+.|++||+++. +++.++..|..-+..+.+ .+++|++++.|++|++|
T Consensus 369 g-H~~~V~sl~~~~~-~------~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~W 438 (537)
T KOG0274|consen 369 G-HTGRVYSLIVDSE-N------RLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLW 438 (537)
T ss_pred C-CcceEEEEEecCc-c------eEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEe
Confidence 8 4556888877775 3 3567788999999999999 999999999887765554 47899999999999999
Q ss_pred ECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490 328 DSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL 381 (406)
Q Consensus 328 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~ 381 (406)
|..+++.+..+...|.+.|..+++. ...+++++.||++++||+++++....+
T Consensus 439 D~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 439 DAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred ecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 9999999999973367888888876 456888999999999999999886654
No 90
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=1.6e-25 Score=179.64 Aligned_cols=209 Identities=15% Similarity=0.162 Sum_probs=185.1
Q ss_pred cccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeee
Q 015490 165 ENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVA 244 (406)
Q Consensus 165 ~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~ 244 (406)
.|..+++.+.++.+|.+|++++.|.+..||-..+|+.+..+.+|.+.|++++.+.+.+++++|+.|.++++||+++|+++
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~l 87 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQL 87 (327)
T ss_pred cCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEE
Confidence 36688999999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred eecccCCcceEEEEEEEcCCCCceEEEEEEEc----CCCcEEEEEeCC-------CceEEEEeeecCCCeEEEEEcCCCC
Q 015490 245 TPLAKENDELFASCRFSPLNNEDYVLYIAAIT----DRGASIVTWNTT-------TWKRIRTKQVVREPVSSFNVSADGK 313 (406)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~i~~~d~~-------~~~~~~~~~~~~~~i~~~~~sp~~~ 313 (406)
..++. ..++..+.|+++++. ++++. +..+.|.++|++ ..++...+..+...++.+-|+|-++
T Consensus 88 a~~k~--~~~Vk~~~F~~~gn~-----~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~ 160 (327)
T KOG0643|consen 88 ATWKT--NSPVKRVDFSFGGNL-----ILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE 160 (327)
T ss_pred EEeec--CCeeEEEeeccCCcE-----EEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence 98864 456889999999984 33332 335789999998 4456777778888999999999999
Q ss_pred EEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCC
Q 015490 314 LLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGG 380 (406)
Q Consensus 314 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~ 380 (406)
+|++|.+||.|.+||+++++....-...|...|+.+++++|..+++++|.|.+-++||+.+-+.+..
T Consensus 161 ~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kt 227 (327)
T KOG0643|consen 161 TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKT 227 (327)
T ss_pred EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEE
Confidence 9999999999999999998766655558999999999999999999999999999999988665443
No 91
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.9e-26 Score=203.80 Aligned_cols=244 Identities=16% Similarity=0.198 Sum_probs=204.5
Q ss_pred EEEEc-cCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCEEEEeeCCCeEEEE
Q 015490 118 RMAIH-PHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGSENGNLRVF 194 (406)
Q Consensus 118 ~~~~s-p~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i~vw 194 (406)
.+..+ |.+++|++|+ |+.+++|......++. .......+++| +.|+.+....+|+.|++++.|-+|++|
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~--------s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W 100 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEP--------STPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVW 100 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCc--------ccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEe
Confidence 34443 4566799988 8988888876543321 12234455555 789999999999999999999999999
Q ss_pred eCCCc--ceEeeeeccCCceeEEEE-ccCCCEEEEEeCCCCEEEEEcCCCee--eee--------cccCCcceEEEEEEE
Q 015490 195 KWPSL--EIILNESEAHASVKDLSF-SPDGKFLVSLGNRGPGRVWDLASSAV--ATP--------LAKENDELFASCRFS 261 (406)
Q Consensus 195 d~~~~--~~~~~~~~~~~~i~~~~~-s~~~~~l~s~s~d~~i~iwd~~~~~~--~~~--------~~~~~~~~~~~~~~~ 261 (406)
+...+ -+...+..|.+-|.|+++ -++...+|+|+-|+.|.+||+.++.. +.. +...+...+++++.+
T Consensus 101 ~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N 180 (735)
T KOG0308|consen 101 NAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMN 180 (735)
T ss_pred ecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecC
Confidence 99776 466677788889999999 77888999999999999999998732 222 222345568888888
Q ss_pred cCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecc
Q 015490 262 PLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKA 341 (406)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 341 (406)
+.+. ++++|+..+.|++||.++.+.+..+++|...|..+..++||+.+++++.||+|++||+...+++.++. .
T Consensus 181 ~t~t------~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~-v 253 (735)
T KOG0308|consen 181 QTGT------IIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI-V 253 (735)
T ss_pred Ccce------EEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE-e
Confidence 8874 67888999999999999999999999999999999999999999999999999999999999999986 8
Q ss_pred cccceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490 342 HLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKK 376 (406)
Q Consensus 342 ~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~ 376 (406)
|...|+++..+|+-.++.+|+.||.|..=|+++..
T Consensus 254 H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 254 HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPA 288 (735)
T ss_pred ccCceEEEeeCCCcceEEecCCCCcEEecccCCch
Confidence 99999999999999999999999999999998853
No 92
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.8e-25 Score=191.30 Aligned_cols=294 Identities=14% Similarity=0.148 Sum_probs=207.4
Q ss_pred CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccC-------CCeEEEEe-cCCeEEE
Q 015490 68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPH-------GDGIICAL-QNSCRLF 139 (406)
Q Consensus 68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-------~~~l~~~~-~~~~~i~ 139 (406)
.++.++.+-. ..-...+.+|.++.+...+....-. --.....|++|... |+++|.|. +..+.||
T Consensus 136 sDnlIl~ar~-----eddvs~LEvYVyn~~e~nlYvHHD~---ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIW 207 (463)
T KOG0270|consen 136 SDNLILCARN-----EDDVSYLEVYVYNEEEENLYVHHDF---ILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIW 207 (463)
T ss_pred CCcEEEEeec-----cCCceEEEEEEEcCCCcceeEecce---eccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEe
Confidence 5666665422 1223467888888766333111100 11244567777542 56899998 9999999
Q ss_pred EEecccccceee-cceecc-------ceeeecccccCcEEEEEECCCC-CEEEEeeCCCeEEEEeCCCcceEeeeeccCC
Q 015490 140 EWDEVENTEIRR-LGVKIS-------EKVLSQLENVGQQLALTFDSEG-TIFAAGSENGNLRVFKWPSLEIILNESEAHA 210 (406)
Q Consensus 140 ~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 210 (406)
+++......... +..... .+......|...|..++|+..- +.||+|+.|.+|++||+.++++...+..|.+
T Consensus 208 DLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k 287 (463)
T KOG0270|consen 208 DLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGK 287 (463)
T ss_pred ccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCC
Confidence 999875432211 110000 0011111244677788888754 7899999999999999999999998887778
Q ss_pred ceeEEEEccC-CCEEEEEeCCCCEEEEEcCCCeee-eecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC
Q 015490 211 SVKDLSFSPD-GKFLVSLGNRGPGRVWDLASSAVA-TPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT 288 (406)
Q Consensus 211 ~i~~~~~s~~-~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~ 288 (406)
.|.++.|+|. ...|++|+.|+++.+.|.+..... ..+. ....+..++|.|.... ....+..||.|+-+|+|
T Consensus 288 ~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk--~~g~VEkv~w~~~se~-----~f~~~tddG~v~~~D~R 360 (463)
T KOG0270|consen 288 KVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK--FDGEVEKVAWDPHSEN-----SFFVSTDDGTVYYFDIR 360 (463)
T ss_pred ceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE--eccceEEEEecCCCce-----eEEEecCCceEEeeecC
Confidence 9999999985 568999999999999999852221 1222 2345788999999885 45566789999999998
Q ss_pred Cc-eEEEEeeecCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCceEEEEeecccc---cceEEEEEcCCC-CeEEEEE
Q 015490 289 TW-KRIRTKQVVREPVSSFNVSAD-GKLLAVGTASGDISIIDSSSLQVRTAVKKAHL---GIVTALAFSYDS-RALVSAS 362 (406)
Q Consensus 289 ~~-~~~~~~~~~~~~i~~~~~sp~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~v~~~~~sp~~-~~l~s~s 362 (406)
.. +++.++..|...|.++++++. ..++++++.|+.|++|++......... .|. +...|.++.|+- -+|+.|+
T Consensus 361 ~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~--~~~~~~~rl~c~~~~~~~a~~la~GG 438 (463)
T KOG0270|consen 361 NPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVK--EHSFKLGRLHCFALDPDVAFTLAFGG 438 (463)
T ss_pred CCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccc--cccccccceeecccCCCcceEEEecC
Confidence 75 899999999999999999984 457889999999999998765443322 122 235577777764 4567788
Q ss_pred CCCcEEEEEecCCcCC
Q 015490 363 MDSSVRVTVIEDKKKS 378 (406)
Q Consensus 363 ~dg~i~iw~~~~~~~~ 378 (406)
..+.++|||+.+...+
T Consensus 439 ~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 439 EKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccceEEEeecccChhH
Confidence 8888999999887654
No 93
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=1.2e-23 Score=187.48 Aligned_cols=264 Identities=15% Similarity=0.200 Sum_probs=189.4
Q ss_pred EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeeccccc
Q 015490 90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV 167 (406)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (406)
.+..|+..+. +.+..+..|. .+.+++|+|+++.+++++ ++.+++ |+..+++... .+..+
T Consensus 12 ~v~~~d~~t~----~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~--~d~~~~~~~~------------~~~~~ 72 (300)
T TIGR03866 12 TISVIDTATL----EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQV--IDLATGEVIG------------TLPSG 72 (300)
T ss_pred EEEEEECCCC----ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEE--EECCCCcEEE------------eccCC
Confidence 4556666542 3556666554 467899999999876554 455555 5544333222 22233
Q ss_pred CcEEEEEECCCCCEEEEe-eCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCC-CEEEEEcCCCeeee
Q 015490 168 GQQLALTFDSEGTIFAAG-SENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRG-PGRVWDLASSAVAT 245 (406)
Q Consensus 168 ~~v~~~~~s~~g~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~-~i~iwd~~~~~~~~ 245 (406)
..+..++|+|+++.++++ ..++.+++||+.+.+.+..+.. ...+.+++|+|+++++++++.++ .+.+||.++++...
T Consensus 73 ~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~ 151 (300)
T TIGR03866 73 PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVD 151 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEE
Confidence 345678999999877654 5689999999998777655542 23468899999999999888765 46778998887765
Q ss_pred ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC-------CCeEEEEEcCCCCEEEEE
Q 015490 246 PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR-------EPVSSFNVSADGKLLAVG 318 (406)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-------~~i~~~~~sp~~~~l~~~ 318 (406)
.+.... ....++|+|+++. +++++..++.|++||+++++.+..+..+. .....++|+|++++++++
T Consensus 152 ~~~~~~--~~~~~~~s~dg~~-----l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~ 224 (300)
T TIGR03866 152 NVLVDQ--RPRFAEFTADGKE-----LWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA 224 (300)
T ss_pred EEEcCC--CccEEEECCCCCE-----EEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEE
Confidence 443222 3457899999984 44555678999999999988777664321 123468899999986654
Q ss_pred -eCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEE-ECCCcEEEEEecCCcCCCCch
Q 015490 319 -TASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSA-SMDSSVRVTVIEDKKKSGGLN 382 (406)
Q Consensus 319 -~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~-s~dg~i~iw~~~~~~~~~~~~ 382 (406)
..++.+.+||+++++....+. +...+.+++|+|+|++|+++ +.++.|++||+++++.+..++
T Consensus 225 ~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 225 LGPANRVAVVDAKTYEVLDYLL--VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred cCCCCeEEEEECCCCcEEEEEE--eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 446789999999888776654 44578999999999999876 468999999999998766654
No 94
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=1.5e-25 Score=208.14 Aligned_cols=241 Identities=19% Similarity=0.267 Sum_probs=202.2
Q ss_pred cCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeec-ccc-cCcEEEEEECCCCCEEEEeeC
Q 015490 111 TDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQ-LEN-VGQQLALTFDSEGTIFAAGSE 187 (406)
Q Consensus 111 ~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~v~~~~~s~~g~~l~~~~~ 187 (406)
.|...+.+..|+ ..+++++. ++.+++|+.. + ...+.. +.+ .+.|.++++..-+.++++|+.
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~--~------------~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~ 269 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLN--N------------GYLILTRLVGHFGGVWGLAFPSGGDKLVSGST 269 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecc--c------------ceEEEeeccCCCCCceeEEEecCCCEEEEEec
Confidence 367788999998 45566665 7776665543 2 222222 444 489999999887789999999
Q ss_pred CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCc
Q 015490 188 NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNED 267 (406)
Q Consensus 188 dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (406)
|.++++||..++++...+.+|...|.++... ...+++|+.|.+|++|++.++..+..+.+ +...|.++..+ +.
T Consensus 270 D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~-h~~~V~~v~~~--~~-- 342 (537)
T KOG0274|consen 270 DKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRG-HTGPVNCVQLD--EP-- 342 (537)
T ss_pred CCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEecc-ccccEEEEEec--CC--
Confidence 9999999999999999999999999988875 44788889999999999999999999987 67789999888 33
Q ss_pred eEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc-eEEEEeecccccce
Q 015490 268 YVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSL-QVRTAVKKAHLGIV 346 (406)
Q Consensus 268 ~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v 346 (406)
.+++++.|+.|.+||..+++++..+.+|...|.++.+.+. ..+++|+.|+.|++||+.+. +++..+. +|..-+
T Consensus 343 ----~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~-~h~~~v 416 (537)
T KOG0274|consen 343 ----LLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ-GHTSLV 416 (537)
T ss_pred ----EEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhc-CCcccc
Confidence 4567788999999999999999999999999999988865 89999999999999999999 8888886 888888
Q ss_pred EEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCch
Q 015490 347 TALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLN 382 (406)
Q Consensus 347 ~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~ 382 (406)
..+.+ .+++|++++.|++|++||..+++.+..+.
T Consensus 417 ~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~ 450 (537)
T KOG0274|consen 417 SSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLE 450 (537)
T ss_pred ccccc--ccceeEeccccccEEEeecccCceeeeec
Confidence 76665 46799999999999999999988766543
No 95
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=7.5e-26 Score=196.31 Aligned_cols=277 Identities=15% Similarity=0.153 Sum_probs=220.6
Q ss_pred ccccCCCCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEe--cCCCCceEEEEccCCCeEEEEe-cCCeE
Q 015490 61 DKSDDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELR--TDSDLPYRMAIHPHGDGIICAL-QNSCR 137 (406)
Q Consensus 61 ~~~~~~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~sp~~~~l~~~~-~~~~~ 137 (406)
-....+.+.++++++|-| .+.+|.+....+.. ++..+. ...+-+.++.+.|||+.|++|+ ..++.
T Consensus 423 cAvtIS~~trhVyTgGkg---------cVKVWdis~pg~k~---PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastls 490 (705)
T KOG0639|consen 423 CAVTISNPTRHVYTGGKG---------CVKVWDISQPGNKS---PVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLS 490 (705)
T ss_pred EEEEecCCcceeEecCCC---------eEEEeeccCCCCCC---ccccccccCcccceeeeEecCCCceEEeccccceee
Confidence 334444555666654433 34566655544332 343333 2356789999999999999998 77888
Q ss_pred EEEEecccccceeecceeccceeeecccc-cCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEE
Q 015490 138 LFEWDEVENTEIRRLGVKISEKVLSQLEN-VGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLS 216 (406)
Q Consensus 138 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 216 (406)
||++...+...... +.. .-.+.+++.|||.+..+++..||.|.|||+.+...++.+.+|.+.+.||.
T Consensus 491 iWDLAapTprikae------------ltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascId 558 (705)
T KOG0639|consen 491 IWDLAAPTPRIKAE------------LTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID 558 (705)
T ss_pred eeeccCCCcchhhh------------cCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEE
Confidence 98877644322111 112 23567899999999999999999999999999999999999999999999
Q ss_pred EccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEe
Q 015490 217 FSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTK 296 (406)
Q Consensus 217 ~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~ 296 (406)
+++||..|.+|+-|++++.||+++++.+.... ....|.++.++|.+. +++.+-.++.+.+...... ....+
T Consensus 559 is~dGtklWTGGlDntvRcWDlregrqlqqhd--F~SQIfSLg~cP~~d------WlavGMens~vevlh~skp-~kyql 629 (705)
T KOG0639|consen 559 ISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD--FSSQIFSLGYCPTGD------WLAVGMENSNVEVLHTSKP-EKYQL 629 (705)
T ss_pred ecCCCceeecCCCccceeehhhhhhhhhhhhh--hhhhheecccCCCcc------ceeeecccCcEEEEecCCc-cceee
Confidence 99999999999999999999999988766543 344578899999998 4677788888888877653 34566
Q ss_pred eecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEe
Q 015490 297 QVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVI 372 (406)
Q Consensus 297 ~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~ 372 (406)
..|...|.++.|.+.|+++++.+.|+.+..|.+.-|..+...+ ....|.++..|.|.++++|||.|....||.+
T Consensus 630 hlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk--E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 630 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc--ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 6788899999999999999999999999999999998888875 7789999999999999999999999999876
No 96
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=5.1e-25 Score=179.69 Aligned_cols=247 Identities=17% Similarity=0.193 Sum_probs=186.5
Q ss_pred cCCCCceEEEEccCCCeEE-EEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCC
Q 015490 111 TDSDLPYRMAIHPHGDGII-CAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSEN 188 (406)
Q Consensus 111 ~h~~~v~~~~~sp~~~~l~-~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 188 (406)
.-++.|.+++|||....++ +++ |+++|+|.+... +... ......+.++|.+++|+.||..+++|+.|
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~-g~~~----------~ka~~~~~~PvL~v~WsddgskVf~g~~D 93 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNS-GQLV----------PKAQQSHDGPVLDVCWSDDGSKVFSGGCD 93 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecC-Cccc----------chhhhccCCCeEEEEEccCCceEEeeccC
Confidence 3467899999999655555 555 999999998764 1111 11223466899999999999999999999
Q ss_pred CeEEEEeCCCcceEeeeeccCCceeEEEEccCCC--EEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCC
Q 015490 189 GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGK--FLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNE 266 (406)
Q Consensus 189 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (406)
+.+++||+.+++ +..+..|..+|..+.|-+... .|++||.|++|+.||.+...++.++..+.. ++++..-. .
T Consensus 94 k~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR--vYa~Dv~~--p- 167 (347)
T KOG0647|consen 94 KQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER--VYAADVLY--P- 167 (347)
T ss_pred CceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce--eeehhccC--c-
Confidence 999999999995 446778888999999987655 799999999999999999999888876543 43332221 1
Q ss_pred ceEEEEEEEcCCCcEEEEEeCCCceEEEE-ee-ecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc--eEEEEeeccc
Q 015490 267 DYVLYIAAITDRGASIVTWNTTTWKRIRT-KQ-VVREPVSSFNVSADGKLLAVGTASGDISIIDSSSL--QVRTAVKKAH 342 (406)
Q Consensus 267 ~~~l~~~~~~~~~~~i~~~d~~~~~~~~~-~~-~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~ 342 (406)
+++.+..++.|.+|+++++..... .. .....++|++..+|....+.|+-+|.+.|..+..+ +.-..++ .|
T Consensus 168 -----m~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFk-CH 241 (347)
T KOG0647|consen 168 -----MAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFK-CH 241 (347)
T ss_pred -----eeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEE-Ee
Confidence 234445688999999976543221 11 12356889999998888899999999999988775 3233332 34
Q ss_pred c---------cceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCC
Q 015490 343 L---------GIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGG 380 (406)
Q Consensus 343 ~---------~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~ 380 (406)
. -.|++++|+|.-..|+|++.||++.+||-....++..
T Consensus 242 R~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~ 288 (347)
T KOG0647|consen 242 RSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKT 288 (347)
T ss_pred ccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhc
Confidence 3 2578999999988999999999999999887666543
No 97
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.2e-25 Score=206.91 Aligned_cols=207 Identities=21% Similarity=0.320 Sum_probs=171.5
Q ss_pred cccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC----------------------------------------------
Q 015490 165 ENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPS---------------------------------------------- 198 (406)
Q Consensus 165 ~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~---------------------------------------------- 198 (406)
.|.+.|.++.||+||+|||+|+.|+.|+||.+..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 3558999999999999999999999999998643
Q ss_pred --------------cceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCC
Q 015490 199 --------------LEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLN 264 (406)
Q Consensus 199 --------------~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (406)
.+++..+.+|.+.|.++.||.+ ++|++++.|.+|++|++...+++..+. |...|+|++|+|..
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~--HndfVTcVaFnPvD 421 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS--HNDFVTCVAFNPVD 421 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe--cCCeeEEEEecccC
Confidence 0012345677789999999975 489999999999999999999999985 67789999999988
Q ss_pred CCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee-----
Q 015490 265 NEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK----- 339 (406)
Q Consensus 265 ~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----- 339 (406)
.. ...+|+-|+.+++|++...+.+.....+ .-|++++|+|||++.++|+.+|.+++|+....+......
T Consensus 422 Dr-----yFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~ 495 (712)
T KOG0283|consen 422 DR-----YFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN 495 (712)
T ss_pred CC-----cEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc
Confidence 87 5678899999999999987777666655 679999999999999999999999999998877665443
Q ss_pred ---cccccceEEEEEcCCC-CeEEEEECCCcEEEEEecCCcCCCCc
Q 015490 340 ---KAHLGIVTALAFSYDS-RALVSASMDSSVRVTVIEDKKKSGGL 381 (406)
Q Consensus 340 ---~~~~~~v~~~~~sp~~-~~l~s~s~dg~i~iw~~~~~~~~~~~ 381 (406)
..|. .|++++|.|.. ..|++.+.|..|||+|.++.+.+.+|
T Consensus 496 ~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~Kf 540 (712)
T KOG0283|consen 496 KKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKF 540 (712)
T ss_pred CccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhh
Confidence 1123 79999999853 34666789999999999776655444
No 98
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.2e-25 Score=189.02 Aligned_cols=210 Identities=15% Similarity=0.184 Sum_probs=158.7
Q ss_pred cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEE
Q 015490 104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIF 182 (406)
Q Consensus 104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 182 (406)
+...++.+|..+|..+.||||.++|++++ +..+.+ ||..++...+.+.. .+...+.+++|.|||..+
T Consensus 260 kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l--wDv~tgd~~~~y~~----------~~~~S~~sc~W~pDg~~~ 327 (519)
T KOG0293|consen 260 KLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL--WDVDTGDLRHLYPS----------GLGFSVSSCAWCPDGFRF 327 (519)
T ss_pred eeeeeeecccCceEEEEECCCCCeEEecCchHheee--ccCCcchhhhhccc----------CcCCCcceeEEccCCcee
Confidence 56789999999999999999999999887 666555 55554443333211 123578899999999999
Q ss_pred EEeeCCCeEEEEeCCCcceEeeeeccCC-ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCe-------------------
Q 015490 183 AAGSENGNLRVFKWPSLEIILNESEAHA-SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSA------------------- 242 (406)
Q Consensus 183 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~------------------- 242 (406)
++|+.|+++..||++. +......+... .|.+++.++||+++++.+.|..|++++.++..
T Consensus 328 V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d 406 (519)
T KOG0293|consen 328 VTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKD 406 (519)
T ss_pred EecCCCCcEEEecCCc-chhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCC
Confidence 9999999999999854 44445544443 79999999999999998888888888764321
Q ss_pred ----------------------eeeecccCCc-ceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeec
Q 015490 243 ----------------------VATPLAKEND-ELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVV 299 (406)
Q Consensus 243 ----------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 299 (406)
.+..+.++.. ..+-.-+|.-.... ++++|++|+.|++|+..+++++..+.+|
T Consensus 407 ~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~-----fiaSGSED~kvyIWhr~sgkll~~LsGH 481 (519)
T KOG0293|consen 407 GKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDK-----FIASGSEDSKVYIWHRISGKLLAVLSGH 481 (519)
T ss_pred CcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcc-----eEEecCCCceEEEEEccCCceeEeecCC
Confidence 1111112111 11222334433333 6789999999999999999999999999
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q 015490 300 REPVSSFNVSA-DGKLLAVGTASGDISIIDSSS 331 (406)
Q Consensus 300 ~~~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~ 331 (406)
...|.+++|+| +...+|+++.||+|+||-...
T Consensus 482 s~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 482 SKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 99999999999 556889999999999998754
No 99
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=7.2e-25 Score=188.69 Aligned_cols=213 Identities=20% Similarity=0.202 Sum_probs=178.2
Q ss_pred cccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCC--
Q 015490 163 QLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLAS-- 240 (406)
Q Consensus 163 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~-- 240 (406)
....++.|.|++-+|+|.+++.|+..|.|++|.+.+|..+..+..|...|+++.|+.||.+|++++.||.|.+|++..
T Consensus 77 ~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv 156 (476)
T KOG0646|consen 77 YIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV 156 (476)
T ss_pred hcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeec
Confidence 334568899999999999999998999999999999999999988999999999999999999999999999998742
Q ss_pred -------CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCC
Q 015490 241 -------SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGK 313 (406)
Q Consensus 241 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~ 313 (406)
-++.+.+. +|.-.|+.+...+.+.. -.+.+.+.|.++++||+..+..+.++... ..+.+++.+|-++
T Consensus 157 ~a~~~~~~~p~~~f~-~HtlsITDl~ig~Gg~~----~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lDpae~ 230 (476)
T KOG0646|consen 157 SADNDHSVKPLHIFS-DHTLSITDLQIGSGGTN----ARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALDPAER 230 (476)
T ss_pred ccccCCCccceeeec-cCcceeEEEEecCCCcc----ceEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEccccc
Confidence 23334444 34556888887776543 23456689999999999999998888755 6799999999999
Q ss_pred EEEEEeCCCcEEEEECCCce----------------EEEEeeccccc--ceEEEEEcCCCCeEEEEECCCcEEEEEecCC
Q 015490 314 LLAVGTASGDISIIDSSSLQ----------------VRTAVKKAHLG--IVTALAFSYDSRALVSASMDSSVRVTVIEDK 375 (406)
Q Consensus 314 ~l~~~~~dg~i~i~d~~~~~----------------~~~~~~~~~~~--~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~ 375 (406)
.+++|+.+|.|.+.++.+.. .+..+ .+|.+ +|+|++.+-||..|++|+.||+|+|||+.+.
T Consensus 231 ~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~-~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 231 VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVL-VGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred EEEecCCcceEEeeehhcCCcccccccccccccccceeeee-ccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 99999999999998875422 23334 37888 9999999999999999999999999999988
Q ss_pred cCCCCch
Q 015490 376 KKSGGLN 382 (406)
Q Consensus 376 ~~~~~~~ 382 (406)
+.++.+.
T Consensus 310 Q~iRtl~ 316 (476)
T KOG0646|consen 310 QCIRTLQ 316 (476)
T ss_pred HHHHHHh
Confidence 8766554
No 100
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.7e-25 Score=181.75 Aligned_cols=266 Identities=13% Similarity=0.183 Sum_probs=208.6
Q ss_pred ccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEe----cccccceee----------------cc--eecc--
Q 015490 103 DQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWD----EVENTEIRR----------------LG--VKIS-- 157 (406)
Q Consensus 103 ~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~----~~~~~~~~~----------------~~--~~~~-- 157 (406)
..++.++.||.+.|+++.|++.+.++++++ |++..||... ......... .+ .+..
T Consensus 180 g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ 259 (481)
T KOG0300|consen 180 GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGH 259 (481)
T ss_pred ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCc
Confidence 358889999999999999999999888876 8888898732 211100000 00 0000
Q ss_pred --ceeeeccccc-CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEE
Q 015490 158 --EKVLSQLENV-GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGR 234 (406)
Q Consensus 158 --~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~ 234 (406)
..++..+.+| +.|.++.|...|+.+++++.|.+-.+||+++++.+..+.+|....+.++-+|..+++++.+.|.+.+
T Consensus 260 tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFR 339 (481)
T KOG0300|consen 260 TIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFR 339 (481)
T ss_pred eeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeE
Confidence 1233344444 7788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCe-eeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce-EEEEeeecCCCeEEEEEcCCC
Q 015490 235 VWDLASSA-VATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK-RIRTKQVVREPVSSFNVSADG 312 (406)
Q Consensus 235 iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~i~~~~~sp~~ 312 (406)
+||++..- .+..+.+ |...+++..|..+.+ ++++++|.+|++||+++.+ ++.++.. ..++..++.+..+
T Consensus 340 LWDFReaI~sV~VFQG-HtdtVTS~vF~~dd~-------vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~ 410 (481)
T KOG0300|consen 340 LWDFREAIQSVAVFQG-HTDTVTSVVFNTDDR-------VVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGH 410 (481)
T ss_pred eccchhhcceeeeecc-cccceeEEEEecCCc-------eeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCC
Confidence 99998543 3445554 455689999999887 4788999999999998765 4555554 4778999999988
Q ss_pred CEEEEEeCCCcEEEEECCCceEEE---EeecccccceEEEEEcCCC--CeEEEEECCCcEEEEEecCCcC
Q 015490 313 KLLAVGTASGDISIIDSSSLQVRT---AVKKAHLGIVTALAFSYDS--RALVSASMDSSVRVTVIEDKKK 377 (406)
Q Consensus 313 ~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~v~~~~~sp~~--~~l~s~s~dg~i~iw~~~~~~~ 377 (406)
..|+.-..+..|++||+...+..+ .-.++|...|.|++|..+- .-|++|+.|..+.=|++..++.
T Consensus 411 ~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~~ 480 (481)
T KOG0300|consen 411 PIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPTS 480 (481)
T ss_pred ceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccCC
Confidence 899999989999999997544322 2225899999999998653 3478999999999999987653
No 101
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.1e-24 Score=195.49 Aligned_cols=230 Identities=16% Similarity=0.200 Sum_probs=190.2
Q ss_pred CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEec-CCCCceEEEEccCCCeEEEEe-cCCeEEEEEeccc
Q 015490 68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRT-DSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVE 145 (406)
Q Consensus 68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~ 145 (406)
.+.+++++...| .+..||... ...+..+.+ |...|.+++|+ +..+.+|+ ++.+..+++....
T Consensus 228 ~G~~LavG~~~g----------~v~iwD~~~----~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~ 291 (484)
T KOG0305|consen 228 DGSHLAVGTSDG----------TVQIWDVKE----QKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQ 291 (484)
T ss_pred CCCEEEEeecCC----------eEEEEehhh----ccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecch
Confidence 778888876555 466677655 346677777 99999999998 45555555 6666666655421
Q ss_pred ccceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEcc-CCCE
Q 015490 146 NTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSP-DGKF 223 (406)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-~~~~ 223 (406)
.....+. |...|..+.|++|+.++|+|+.|+.+.|||....+....+..|..+|.+++|+| ....
T Consensus 292 -------------~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~l 358 (484)
T KOG0305|consen 292 -------------HVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGL 358 (484)
T ss_pred -------------hhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCc
Confidence 1222234 448899999999999999999999999999988888889999999999999999 4558
Q ss_pred EEEEe--CCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCC
Q 015490 224 LVSLG--NRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVRE 301 (406)
Q Consensus 224 l~s~s--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 301 (406)
||+|+ .|+.|++||..++..+..+.. +..|..+.|++..+. ++.+.|..+..|.+|+..+.+.+..+.+|..
T Consensus 359 LAsGGGs~D~~i~fwn~~~g~~i~~vdt--gsQVcsL~Wsk~~kE----i~sthG~s~n~i~lw~~ps~~~~~~l~gH~~ 432 (484)
T KOG0305|consen 359 LATGGGSADRCIKFWNTNTGARIDSVDT--GSQVCSLIWSKKYKE----LLSTHGYSENQITLWKYPSMKLVAELLGHTS 432 (484)
T ss_pred eEEcCCCcccEEEEEEcCCCcEeccccc--CCceeeEEEcCCCCE----EEEecCCCCCcEEEEeccccceeeeecCCcc
Confidence 88875 599999999999999888754 456999999999986 5667778888999999999999999999999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCc
Q 015490 302 PVSSFNVSADGKLLAVGTASGDISIIDSSSL 332 (406)
Q Consensus 302 ~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~ 332 (406)
.|..++++|||..+++|+.|.++++|++-..
T Consensus 433 RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 433 RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 9999999999999999999999999998764
No 102
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.4e-24 Score=184.24 Aligned_cols=277 Identities=17% Similarity=0.245 Sum_probs=217.6
Q ss_pred CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEeccccc
Q 015490 68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENT 147 (406)
Q Consensus 68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~ 147 (406)
...+++++| ..+.+.++.+|...+. .++.+.--..+|.+.+|.|+|...++.++..-.+|.||..+.+
T Consensus 224 ~~plllvaG--------~d~~lrifqvDGk~N~----~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 224 TAPLLLVAG--------LDGTLRIFQVDGKVNP----KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CCceEEEec--------CCCcEEEEEecCccCh----hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 556667764 3446799999988754 5666777788999999999999444444444467777765443
Q ss_pred ceeecceeccceeeecccc--cCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEE
Q 015490 148 EIRRLGVKISEKVLSQLEN--VGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLV 225 (406)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 225 (406)
..+. ....+ ...+.....|+++++|+..+..|.|.+....+++.+..+. ..+.|.+++|+.|++.|+
T Consensus 292 ~~k~----------~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~ 360 (514)
T KOG2055|consen 292 VTKL----------KPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELL 360 (514)
T ss_pred cccc----------cCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEE
Confidence 2211 11112 2356778899999999999999999999999998887664 456799999999999999
Q ss_pred EEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC------ceEEEEeeec
Q 015490 226 SLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT------WKRIRTKQVV 299 (406)
Q Consensus 226 s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~------~~~~~~~~~~ 299 (406)
+++.+|.|.+||++...+++++.....-.-++++.++++. ++++|+..|.|.+||.++ .+++..+..-
T Consensus 361 ~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~------ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL 434 (514)
T KOG2055|consen 361 ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGS------YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL 434 (514)
T ss_pred EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCc------eEEeccCcceEEEeccchhhccCCCCchhhhhhh
Confidence 9999999999999999999988765554456777788887 478999999999999753 4556666655
Q ss_pred CCCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCceEEEEeec--ccccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490 300 REPVSSFNVSADGKLLAVGTA--SGDISIIDSSSLQVRTAVKK--AHLGIVTALAFSYDSRALVSASMDSSVRVTVIE 373 (406)
Q Consensus 300 ~~~i~~~~~sp~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~ 373 (406)
...|+++.|+||++.||.++. +..+++..+.+......++. ..-+.|+|++|||.|.+|+.|..+|++.+|.+.
T Consensus 435 tt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 435 TTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred heeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 678999999999999998886 67899999988777666642 223568999999999999999999999999985
No 103
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=3.9e-24 Score=175.20 Aligned_cols=266 Identities=14% Similarity=0.168 Sum_probs=199.6
Q ss_pred CCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeE
Q 015490 113 SDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNL 191 (406)
Q Consensus 113 ~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i 191 (406)
.+.|.+|.|+|.+..|++++ |+++++|+.+.. .....+.+..++.+++|.++ ..+++|+-||.|
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~--------------~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~v 77 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN--------------SLKLKFKHGAPLLDCAFADE-STIVTGGLDGQV 77 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccch--------------hhhhheecCCceeeeeccCC-ceEEEeccCceE
Confidence 57789999999988888877 999999998753 33345668899999999975 568899999999
Q ss_pred EEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEE
Q 015490 192 RVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271 (406)
Q Consensus 192 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 271 (406)
+.+|+.++... .+..|..+|+++.+++....+++|+.|++|++||.+.......+.. ...|.++....+
T Consensus 78 r~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~--~kkVy~~~v~g~-------- 146 (323)
T KOG1036|consen 78 RRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ--GKKVYCMDVSGN-------- 146 (323)
T ss_pred EEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc--CceEEEEeccCC--------
Confidence 99999988765 4556777999999999888999999999999999987554444433 335666655443
Q ss_pred EEEEcCCCcEEEEEeCCCceEEEEeee--cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc----eEEEEeecccc--
Q 015490 272 IAAITDRGASIVTWNTTTWKRIRTKQV--VREPVSSFNVSADGKLLAVGTASGDISIIDSSSL----QVRTAVKKAHL-- 343 (406)
Q Consensus 272 ~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~-- 343 (406)
.+..+..+..+.+||+++.....+... -+..+.++++-|++.-.++++-||.|.+=..+.. +....++ .|.
T Consensus 147 ~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFk-CHr~~ 225 (323)
T KOG1036|consen 147 RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFK-CHRLS 225 (323)
T ss_pred EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEE-eeecc
Confidence 234456789999999998765443222 2357899999998888899999999887655543 2333333 342
Q ss_pred -------cceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCchHH---H-----HHHHHHHHHHHHHHHhcCCC
Q 015490 344 -------GIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLNLW---I-----IIFILLLAMAAYFVKAKGII 405 (406)
Q Consensus 344 -------~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~ 405 (406)
-+|++|+|+|--..|+||+.||.|.+||+.+.|++.+++-. + ..-.-.||+++.|..+.+.+
T Consensus 226 ~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy~ye~~~~ 302 (323)
T KOG1036|consen 226 EKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSYQYERADT 302 (323)
T ss_pred cCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEechhhhcCCC
Confidence 37999999999889999999999999999999987766532 1 11112455666666555544
No 104
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=2.1e-24 Score=194.70 Aligned_cols=286 Identities=19% Similarity=0.224 Sum_probs=210.7
Q ss_pred CccEEEEEEecCCCCccccceeEEecCCCCceEEEEcc------------CCCeEEEEecCCeEEEEEecccccceee--
Q 015490 86 RNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHP------------HGDGIICALQNSCRLFEWDEVENTEIRR-- 151 (406)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp------------~~~~l~~~~~~~~~i~~~~~~~~~~~~~-- 151 (406)
.|.-.+|.||...-.. ......+-.|...|..+.--| .+.++-+++|+++++|+++.-+...+..
T Consensus 343 YndhSlYvWDvrD~~k-vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRN 421 (1080)
T KOG1408|consen 343 YNDHSLYVWDVRDVNK-VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRN 421 (1080)
T ss_pred EcCceEEEEecccccc-ccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecc
Confidence 4455778888755332 234445566887777776554 2333444459999999988743333211
Q ss_pred -cc-----ee---c-------------cceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccC
Q 015490 152 -LG-----VK---I-------------SEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAH 209 (406)
Q Consensus 152 -~~-----~~---~-------------~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 209 (406)
+. .. . ...........-.+.+++.||+|++||+|..-|+++||++...+....+..|.
T Consensus 422 ils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHe 501 (1080)
T KOG1408|consen 422 ILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHE 501 (1080)
T ss_pred cchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheeccc
Confidence 00 00 0 01111223334578999999999999999999999999999998888888999
Q ss_pred CceeEEEEcc---CCCEEEEEeCCCCEEEEEcCCCeee-eecccCCcceEEEEEEEcCCCCce-----------------
Q 015490 210 ASVKDLSFSP---DGKFLVSLGNRGPGRVWDLASSAVA-TPLAKENDELFASCRFSPLNNEDY----------------- 268 (406)
Q Consensus 210 ~~i~~~~~s~---~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----------------- 268 (406)
..|.|+.|+. ..++|++++.|..|+|||+...-.+ .++. .|...|+++.|...+-+-.
T Consensus 502 sEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld-~HSssITsvKFa~~gln~~MiscGADksimFr~~qk 580 (1080)
T KOG1408|consen 502 SEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLD-GHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQK 580 (1080)
T ss_pred ceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhc-ccccceeEEEEeecCCceEEEeccCchhhheehhcc
Confidence 9999999985 3568999999999999998643222 2222 2233344444443331100
Q ss_pred -----------------EEE---------EEEEcCCCcEEEEEeCCCceEEEEeeec---CCCeEEEEEcCCCCEEEEEe
Q 015490 269 -----------------VLY---------IAAITDRGASIVTWNTTTWKRIRTKQVV---REPVSSFNVSADGKLLAVGT 319 (406)
Q Consensus 269 -----------------~l~---------~~~~~~~~~~i~~~d~~~~~~~~~~~~~---~~~i~~~~~sp~~~~l~~~~ 319 (406)
.+| .+++++.|..|++||+.+++..+.|++. .+....+...|.|.||++.+
T Consensus 581 ~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atSc 660 (1080)
T KOG1408|consen 581 ASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSC 660 (1080)
T ss_pred ccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEee
Confidence 000 3566788999999999999999999764 46778899999999999999
Q ss_pred CCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490 320 ASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED 374 (406)
Q Consensus 320 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~ 374 (406)
.|.++.++|..+++++.+.. +|...|+.+.|++|.++|++.+.||.|.||.+..
T Consensus 661 sdktl~~~Df~sgEcvA~m~-GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 661 SDKTLCFVDFVSGECVAQMT-GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cCCceEEEEeccchhhhhhc-CcchheeeeeecccchhheeecCCceEEEEECch
Confidence 99999999999999999996 9999999999999999999999999999999865
No 105
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=7.2e-26 Score=188.94 Aligned_cols=247 Identities=15% Similarity=0.225 Sum_probs=201.3
Q ss_pred cceeEEecCCCCceEEEEccCC-CeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCC
Q 015490 104 QPVAELRTDSDLPYRMAIHPHG-DGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGT 180 (406)
Q Consensus 104 ~~~~~~~~h~~~v~~~~~sp~~-~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~ 180 (406)
..+..+.||.+.|.|++=+|.. ..+++|+ ||.++||++. ...++..+..| +.|..+++.. .
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnls--------------qR~~~~~f~AH~G~V~Gi~v~~--~ 120 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLS--------------QRECIRTFKAHEGLVRGICVTQ--T 120 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehh--------------hhhhhheeecccCceeeEEecc--c
Confidence 4567789999999999999987 5677776 9999998876 33444555555 7899999987 5
Q ss_pred EEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEE
Q 015490 181 IFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRF 260 (406)
Q Consensus 181 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 260 (406)
.+++++.|.+|+.|.++.. ....+. ....+..+.-+..+..+++++. .|.|||.....++..+.-..+ .+.++.|
T Consensus 121 ~~~tvgdDKtvK~wk~~~~-p~~til-g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~D-ti~svkf 195 (433)
T KOG0268|consen 121 SFFTVGDDKTVKQWKIDGP-PLHTIL-GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGAD-SISSVKF 195 (433)
T ss_pred ceEEecCCcceeeeeccCC-cceeee-ccccccccccccccccccccCc--eeeecccccCCccceeecCCC-ceeEEec
Confidence 6888899999999998653 444433 3446777777777788888876 599999988888888775544 4789999
Q ss_pred EcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeec
Q 015490 261 SPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKK 340 (406)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 340 (406)
+|.... +++++..|+.|.+||+++.++++..... ..-..++|+|.+-.+++|++|..++.||++..........
T Consensus 196 NpvETs-----ILas~~sDrsIvLyD~R~~~Pl~KVi~~-mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~ 269 (433)
T KOG0268|consen 196 NPVETS-----ILASCASDRSIVLYDLRQASPLKKVILT-MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK 269 (433)
T ss_pred CCCcch-----heeeeccCCceEEEecccCCccceeeee-ccccceecCccccceeeccccccceehhhhhhcccchhhc
Confidence 999886 7788889999999999999988877654 3357899999887888999999999999998665544445
Q ss_pred ccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490 341 AHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK 377 (406)
Q Consensus 341 ~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~ 377 (406)
+|...|.++.|||.|+-+++||.|.+|+||.++.+..
T Consensus 270 dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S 306 (433)
T KOG0268|consen 270 DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS 306 (433)
T ss_pred ccceeEEEeccCCCcchhccccccceEEEeecCCCcc
Confidence 8999999999999999999999999999999987765
No 106
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7.7e-25 Score=195.59 Aligned_cols=285 Identities=16% Similarity=0.184 Sum_probs=222.2
Q ss_pred cccCCCCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEE
Q 015490 62 KSDDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFE 140 (406)
Q Consensus 62 ~~~~~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~ 140 (406)
.-...+.+++++.+|..| .+.++.+....+......+..++.|.++|..+....+++.|++++ |-++++|+
T Consensus 30 Lq~da~~~ryLfTgGRDg--------~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~ 101 (735)
T KOG0308|consen 30 LQLDAPNGRYLFTGGRDG--------IIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWN 101 (735)
T ss_pred ccccCCCCceEEecCCCc--------eEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEee
Confidence 334455677777664333 234444444443333345889999999999999999998888876 99999988
Q ss_pred Eecccccceeecceeccceeeeccc-ccCcEEEEEE-CCCCCEEEEeeCCCeEEEEeCCCcce----------Eeeee-c
Q 015490 141 WDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTF-DSEGTIFAAGSENGNLRVFKWPSLEI----------ILNES-E 207 (406)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~-s~~g~~l~~~~~dg~i~vwd~~~~~~----------~~~~~-~ 207 (406)
..... .-+..+++ |.+.|.|+++ .++..++|+|+-|+.|.+||++++.. ...+. +
T Consensus 102 ~~~~~------------~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG 169 (735)
T KOG0308|consen 102 AHKDN------------TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSG 169 (735)
T ss_pred cccCc------------chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCC
Confidence 76532 12333444 4488999999 78889999999999999999987732 12222 5
Q ss_pred cCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeC
Q 015490 208 AHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNT 287 (406)
Q Consensus 208 ~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~ 287 (406)
+...|++++-++.|..|++|+..+.+++||.++.+.+..+.+| ...|..+..+++|.. +.+++.||+|++||+
T Consensus 170 ~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGH-TdNVr~ll~~dDGt~------~ls~sSDgtIrlWdL 242 (735)
T KOG0308|consen 170 PKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGH-TDNVRVLLVNDDGTR------LLSASSDGTIRLWDL 242 (735)
T ss_pred CccceeeeecCCcceEEEecCcccceEEeccccccceeeeecc-ccceEEEEEcCCCCe------EeecCCCceEEeeec
Confidence 5568999999999999999999999999999999999999855 556899999999986 567788999999999
Q ss_pred CCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcE
Q 015490 288 TTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSV 367 (406)
Q Consensus 288 ~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i 367 (406)
...+++.++..|...++++..+|+=..+++|+.||.|..=|+++......+- ....+|..+..+.+..-+=+++.|+.|
T Consensus 243 gqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlic-k~daPv~~l~~~~~~~~~WvtTtds~I 321 (735)
T KOG0308|consen 243 GQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLIC-KEDAPVLKLHLHEHDNSVWVTTTDSSI 321 (735)
T ss_pred cccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEee-cCCCchhhhhhccccCCceeeeccccc
Confidence 9999999999999999999999999999999999999999998843322221 355577777777544444566789999
Q ss_pred EEEEecC
Q 015490 368 RVTVIED 374 (406)
Q Consensus 368 ~iw~~~~ 374 (406)
+-|..+-
T Consensus 322 ~rW~~~~ 328 (735)
T KOG0308|consen 322 KRWKLEP 328 (735)
T ss_pred eecCCcc
Confidence 9998754
No 107
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=3.7e-25 Score=192.02 Aligned_cols=254 Identities=15% Similarity=0.214 Sum_probs=207.2
Q ss_pred cCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCe
Q 015490 111 TDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGN 190 (406)
Q Consensus 111 ~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 190 (406)
.|.+.|.++.++...+++++|+.+.++||++.....+. ....+..+.....++++.++|||+.|++|++-.+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~--------PvsqLdcl~rdnyiRSckL~pdgrtLivGGeast 488 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKS--------PVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEAST 488 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCC--------ccccccccCcccceeeeEecCCCceEEeccccce
Confidence 58889999999999999999999999999887542211 1111222334567999999999999999999999
Q ss_pred EEEEeCCCcceEee--eeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCce
Q 015490 191 LRVFKWPSLEIILN--ESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDY 268 (406)
Q Consensus 191 i~vwd~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (406)
+.|||+........ +.......++++.+||.+..+++..||.|.|||+.+...++.+.++.+. ..|+..+++|.+
T Consensus 489 lsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDG-ascIdis~dGtk-- 565 (705)
T KOG0639|consen 489 LSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG-ASCIDISKDGTK-- 565 (705)
T ss_pred eeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCC-ceeEEecCCCce--
Confidence 99999976544322 3222337788999999999999999999999999999999999987654 779999999986
Q ss_pred EEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEE
Q 015490 269 VLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTA 348 (406)
Q Consensus 269 ~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~ 348 (406)
+-+++-|.+|+.||+++++.+..... ...|.++.++|++.++++|-.++.+.|......+. ..+. -|...|.+
T Consensus 566 ----lWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-yqlh-lheScVLS 638 (705)
T KOG0639|consen 566 ----LWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-YQLH-LHESCVLS 638 (705)
T ss_pred ----eecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccceeeecccCcEEEEecCCccc-eeec-ccccEEEE
Confidence 45778999999999999887665543 36799999999999999999999999988764443 3442 69999999
Q ss_pred EEEcCCCCeEEEEECCCcEEEEEecCCcCCCCch
Q 015490 349 LAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLN 382 (406)
Q Consensus 349 ~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~ 382 (406)
+.|.+.|+++++.+.|+-+..|...-|..+.+.+
T Consensus 639 lKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk 672 (705)
T KOG0639|consen 639 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK 672 (705)
T ss_pred EEecccCceeeecCchhhhhhccCccccceeecc
Confidence 9999999999999999999999998877655443
No 108
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=1.5e-25 Score=178.08 Aligned_cols=251 Identities=17% Similarity=0.213 Sum_probs=206.9
Q ss_pred ceeEEecCCCCceEEEEcc---CCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCC
Q 015490 105 PVAELRTDSDLPYRMAIHP---HGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEG 179 (406)
Q Consensus 105 ~~~~~~~h~~~v~~~~~sp---~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g 179 (406)
...+..+|+.+|..++|+| +|-+|++++ |+.-.+.+=+ +..-+.++.+| +.|.....+.+.
T Consensus 6 ~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~--------------tgdwigtfeghkgavw~~~l~~na 71 (334)
T KOG0278|consen 6 TPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGD--------------TGDWIGTFEGHKGAVWSATLNKNA 71 (334)
T ss_pred CceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCC--------------CCCcEEeeeccCcceeeeecCchh
Confidence 3456789999999999985 777788777 6665553322 34455566666 889999999998
Q ss_pred CEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeee-eecccCCcceEEEE
Q 015490 180 TIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVA-TPLAKENDELFASC 258 (406)
Q Consensus 180 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~ 258 (406)
..-|+++.|-+-++||.-+|..+..+ .|..-|..++|+.|.++|++|+.+..++|||++..+.. ..+. .+...|..+
T Consensus 72 ~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~-ghtg~Ir~v 149 (334)
T KOG0278|consen 72 TRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEIS-GHTGGIRTV 149 (334)
T ss_pred hhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhc-CCCCcceeE
Confidence 88999999999999999999888765 45557999999999999999999999999999876544 3444 445568888
Q ss_pred EEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEe
Q 015490 259 RFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAV 338 (406)
Q Consensus 259 ~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 338 (406)
-|....+. +.+...++.|++||.++++.+.++... .+|+++.++++|++|.++ ..+.|.+||..+...+..+
T Consensus 150 ~wc~eD~~------iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~ 221 (334)
T KOG0278|consen 150 LWCHEDKC------ILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSY 221 (334)
T ss_pred EEeccCce------EEeeccCCceEEEEeccCcEEEEEecC-CCCcceeeccCCCEEEEe-cCceeEEeccccccceeec
Confidence 88887774 344488999999999999999998865 679999999999988765 4677999999999999887
Q ss_pred ecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490 339 KKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL 381 (406)
Q Consensus 339 ~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~ 381 (406)
. -...|.+...+|+...+++|+.|..++.||..+++.++.+
T Consensus 222 k--~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~ 262 (334)
T KOG0278|consen 222 K--MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY 262 (334)
T ss_pred c--CccccccccccCCCceEEecCcceEEEEEeccCCceeeec
Confidence 5 5567999999999999999999999999999999987763
No 109
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.7e-24 Score=176.81 Aligned_cols=249 Identities=16% Similarity=0.213 Sum_probs=182.1
Q ss_pred ceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEE
Q 015490 105 PVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFA 183 (406)
Q Consensus 105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 183 (406)
.+..+++|.+.|++++|+.||++|++++ |+.++||+.+.-..++.+. ++..-.-+..+.+.|+||-+-++
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~---------~R~nve~dhpT~V~FapDc~s~v 148 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRC---------IRQNVEYDHPTRVVFAPDCKSVV 148 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhH---------hhccccCCCceEEEECCCcceEE
Confidence 4567899999999999999999999987 9999998877543332221 11111224668899999987655
Q ss_pred Ee-eCCCeEEEEeCCC---cceEee--------e-eccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccC
Q 015490 184 AG-SENGNLRVFKWPS---LEIILN--------E-SEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKE 250 (406)
Q Consensus 184 ~~-~~dg~i~vwd~~~---~~~~~~--------~-~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 250 (406)
+. -...++++|.+.. |..... + ..|...+..+-...++.+|++++.|..|.+|+++ |+.+..+...
T Consensus 149 v~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn 227 (420)
T KOG2096|consen 149 VSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN 227 (420)
T ss_pred EEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc
Confidence 54 4456899998742 221111 1 1222356667777788999999999999999998 8887777654
Q ss_pred CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC---Cc-----eEEEEeeecCCCeEEEEEcCCCCEEEEEeCCC
Q 015490 251 NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT---TW-----KRIRTKQVVREPVSSFNVSADGKLLAVGTASG 322 (406)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~---~~-----~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg 322 (406)
.. ..+..+.+|+|+ ++++++....|++|..- .| +.+..+.+|...|..++|+++.+.+++.+.||
T Consensus 228 q~-~n~~aavSP~GR------Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG 300 (420)
T KOG2096|consen 228 QS-SNYDAAVSPDGR------FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG 300 (420)
T ss_pred cc-cccceeeCCCCc------EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCC
Confidence 33 245788999999 34555677889999863 22 24567889999999999999999999999999
Q ss_pred cEEEEECCC-------------c---------eEEE------------------------------EeecccccceEEEE
Q 015490 323 DISIIDSSS-------------L---------QVRT------------------------------AVKKAHLGIVTALA 350 (406)
Q Consensus 323 ~i~i~d~~~-------------~---------~~~~------------------------------~~~~~~~~~v~~~~ 350 (406)
+++|||++- + .+++ .+...|...|.+++
T Consensus 301 ~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is 380 (420)
T KOG2096|consen 301 KWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSIS 380 (420)
T ss_pred cEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEE
Confidence 999999741 1 0110 00145778899999
Q ss_pred EcCCCCeEEEEECCCcEEEEE
Q 015490 351 FSYDSRALVSASMDSSVRVTV 371 (406)
Q Consensus 351 ~sp~~~~l~s~s~dg~i~iw~ 371 (406)
|+++|++++|++ |..+++..
T Consensus 381 ~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 381 YSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred ecCCCcEEeeec-ceeeeeec
Confidence 999999999986 66788776
No 110
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=1.9e-23 Score=191.70 Aligned_cols=196 Identities=18% Similarity=0.193 Sum_probs=173.1
Q ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeee---eccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeee
Q 015490 168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNE---SEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVA 244 (406)
Q Consensus 168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~ 244 (406)
..+++++.++.|++.+.|...|+|-+|++++|.....+ ..|..+|++++...-++.+++++.+|.+++||.......
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~ 528 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK 528 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence 46788999999999999999999999999999888777 467779999999888899999999999999999988877
Q ss_pred eecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcE
Q 015490 245 TPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDI 324 (406)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i 324 (406)
..+.... .+.++..+.... +++...++-.|+++|..+.+.++.+.+|...|++++|||||++|++++.|++|
T Consensus 529 ~~l~l~~--~~~~iv~hr~s~------l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tI 600 (910)
T KOG1539|consen 529 KSLRLGS--SITGIVYHRVSD------LLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTI 600 (910)
T ss_pred eeeccCC--Ccceeeeeehhh------hhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcE
Confidence 7766443 356677776655 45666789999999999999999999999999999999999999999999999
Q ss_pred EEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECC-CcEEEEEec
Q 015490 325 SIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMD-SSVRVTVIE 373 (406)
Q Consensus 325 ~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d-g~i~iw~~~ 373 (406)
++||+.++..+..+. -..+..++.|+|+|.+|||...| ..|++|-=.
T Consensus 601 r~wDlpt~~lID~~~--vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 601 RTWDLPTGTLIDGLL--VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred EEEeccCcceeeeEe--cCCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence 999999999998885 67789999999999999999988 679999643
No 111
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.1e-25 Score=200.98 Aligned_cols=250 Identities=17% Similarity=0.226 Sum_probs=195.1
Q ss_pred CCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECC-CCCEEEEeeCCCeEE
Q 015490 114 DLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDS-EGTIFAAGSENGNLR 192 (406)
Q Consensus 114 ~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~ 192 (406)
....+|..+++-..+++++....+||.++.........+..+ ....-...+..+.|+. +.++||+++..|.|.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k------~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~ 113 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFK------TKQNKFYSAADVKWGQLYSNLIATCSTNGVIS 113 (839)
T ss_pred cccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecc------cccceeeehhhcccccchhhhheeecCCCcEE
Confidence 345677888998999999888889988876544332222210 0011123455678875 568999999999999
Q ss_pred EEeCCC---cceEeeeeccCCceeEEEEccC-CCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCce
Q 015490 193 VFKWPS---LEIILNESEAHASVKDLSFSPD-GKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDY 268 (406)
Q Consensus 193 vwd~~~---~~~~~~~~~~~~~i~~~~~s~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (406)
+||+.. .+.+..+..|...++++.|++. ..+|++||.||+|++||++..+...++.. ....++.+.|+|....
T Consensus 114 vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~-nSESiRDV~fsp~~~~-- 190 (839)
T KOG0269|consen 114 VWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS-NSESIRDVKFSPGYGN-- 190 (839)
T ss_pred EEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc-cchhhhceeeccCCCc--
Confidence 999976 4555667788889999999884 55899999999999999999888877766 4556899999998865
Q ss_pred EEEEEEEcCCCcEEEEEeCCCc-eEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceE
Q 015490 269 VLYIAAITDRGASIVTWNTTTW-KRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVT 347 (406)
Q Consensus 269 ~l~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 347 (406)
..+++.+.|.+.+||++.. ++...+..|.++|.++.|+|++.+||+|+.|+.|+|||+.+.+......-....+|.
T Consensus 191 ---~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~ 267 (839)
T KOG0269|consen 191 ---KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVG 267 (839)
T ss_pred ---eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceee
Confidence 5677789999999999875 457788899999999999999999999999999999999865543332212457899
Q ss_pred EEEEcCCCCe-EEEEE--CCCcEEEEEecCC
Q 015490 348 ALAFSYDSRA-LVSAS--MDSSVRVTVIEDK 375 (406)
Q Consensus 348 ~~~~sp~~~~-l~s~s--~dg~i~iw~~~~~ 375 (406)
.+.|-|+.++ |++++ .|-.|+|||++.+
T Consensus 268 rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 268 RVKWRPARSYHLATCSMVVDTSVHVWDVRRP 298 (839)
T ss_pred eeeeccCccchhhhhhccccceEEEEeeccc
Confidence 9999998654 66665 5778999999875
No 112
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.2e-23 Score=180.85 Aligned_cols=238 Identities=14% Similarity=0.196 Sum_probs=190.6
Q ss_pred ecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCEEEEeeC
Q 015490 110 RTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGSE 187 (406)
Q Consensus 110 ~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~ 187 (406)
++|...+.+++.++||++|++|+ |..+.||+.+. .+.++.+.+| +.|.+++|-.....+++++.
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t--------------~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~ 264 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDT--------------LEHVKVFKGHRGAVSSLAFRKGTSELYSASA 264 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcc--------------cchhhcccccccceeeeeeecCccceeeeec
Confidence 48999999999999999999998 88777877663 3334444455 88999999988888999999
Q ss_pred CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCc
Q 015490 188 NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNED 267 (406)
Q Consensus 188 dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (406)
|..|++|+++....+.++.+|++.|.++.-..-++.+-+++.|+++++|++..... ..+. .+...+.|++|-.+..
T Consensus 265 Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-lifr-g~~~sidcv~~In~~H-- 340 (479)
T KOG0299|consen 265 DRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ-LIFR-GGEGSIDCVAFINDEH-- 340 (479)
T ss_pred CCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccce-eeee-CCCCCeeeEEEecccc--
Confidence 99999999999999999999999999999887777777777999999999944322 2233 3355688899987775
Q ss_pred eEEEEEEEcCCCcEEEEEeCCCceEEEEeee-c-----------CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc---
Q 015490 268 YVLYIAAITDRGASIVTWNTTTWKRIRTKQV-V-----------REPVSSFNVSADGKLLAVGTASGDISIIDSSSL--- 332 (406)
Q Consensus 268 ~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~-----------~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~--- 332 (406)
+++|+.+|.|.+|++.+.+++.+... | ...|++++..|...++++|+.+|.|++|-+..+
T Consensus 341 -----fvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~ 415 (479)
T KOG0299|consen 341 -----FVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA 415 (479)
T ss_pred -----eeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccc
Confidence 47889999999999999888776542 1 127899999999999999999999999998876
Q ss_pred -eEEEEeecccccceEEEEEcCCCCeEEEE-ECCCcEEEEEe
Q 015490 333 -QVRTAVKKAHLGIVTALAFSYDSRALVSA-SMDSSVRVTVI 372 (406)
Q Consensus 333 -~~~~~~~~~~~~~v~~~~~sp~~~~l~s~-s~dg~i~iw~~ 372 (406)
+++..+. ..+.|++++|+++|+.+++| +....+--|-.
T Consensus 416 i~~l~~ls--~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 416 INLLYSLS--LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWC 455 (479)
T ss_pred cceeeecc--cccEEEEEEEccCCCEEEEecccccccceeeE
Confidence 3444443 67889999999999966655 44545544433
No 113
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.6e-24 Score=170.60 Aligned_cols=256 Identities=16% Similarity=0.175 Sum_probs=197.4
Q ss_pred EecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECC--CCCEEEE
Q 015490 109 LRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDS--EGTIFAA 184 (406)
Q Consensus 109 ~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~--~g~~l~~ 184 (406)
-..|.+-|..+...=-|++|++++ |++++|+....... .+.+.++.+| ++|..++|.. -|.+||+
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~-----------s~ll~~L~Gh~GPVwqv~wahPk~G~iLAS 75 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ-----------SKLLAELTGHSGPVWKVAWAHPKFGTILAS 75 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-----------ceeeeEecCCCCCeeEEeecccccCcEeeE
Confidence 356888888888888899999987 99999998776432 1344455555 8999999976 7899999
Q ss_pred eeCCCeEEEEeCCCcce--EeeeeccCCceeEEEEccC--CCEEEEEeCCCCEEEEEcCCC--eeeeecccCCcceEEEE
Q 015490 185 GSENGNLRVFKWPSLEI--ILNESEAHASVKDLSFSPD--GKFLVSLGNRGPGRVWDLASS--AVATPLAKENDELFASC 258 (406)
Q Consensus 185 ~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~~--~~~l~s~s~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~ 258 (406)
++.||.|.||.-++++- ......|...|++++|.|. |-.|++++.||.|.|.+.++. .....+...|...++++
T Consensus 76 csYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsV 155 (299)
T KOG1332|consen 76 CSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSV 155 (299)
T ss_pred eecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccccee
Confidence 99999999999877742 3344566779999999885 568999999999999998764 33344445566678899
Q ss_pred EEEcCCCCc--------eEEEEEEEcCCCcEEEEEeCCCc--eEEEEeeecCCCeEEEEEcCCC----CEEEEEeCCCcE
Q 015490 259 RFSPLNNED--------YVLYIAAITDRGASIVTWNTTTW--KRIRTKQVVREPVSSFNVSADG----KLLAVGTASGDI 324 (406)
Q Consensus 259 ~~~~~~~~~--------~~l~~~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~i~~~~~sp~~----~~l~~~~~dg~i 324 (406)
+|.|..-.. .-..-+++++-|..|++|+..++ +.-.++..|...|+.++|.|.- .+||+++.||++
T Consensus 156 swapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~v 235 (299)
T KOG1332|consen 156 SWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTV 235 (299)
T ss_pred eecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcE
Confidence 999872110 01224688899999999998764 3455688999999999999954 589999999999
Q ss_pred EEEECCCc--eEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCC
Q 015490 325 SIIDSSSL--QVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDK 375 (406)
Q Consensus 325 ~i~d~~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~ 375 (406)
.||..+.. .-..++.......+..+.||..|..|+.++.|+.|.+|.-...
T Consensus 236 iIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 236 IIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred EEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence 99987632 2222333245577999999999999999999999999986543
No 114
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.6e-23 Score=180.13 Aligned_cols=250 Identities=17% Similarity=0.237 Sum_probs=199.4
Q ss_pred CCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCC-EEEEeeCCCe
Q 015490 113 SDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGT-IFAAGSENGN 190 (406)
Q Consensus 113 ~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~ 190 (406)
.+.|++|.|+|....+++++ |+.++||.+|......++.+.+ ...+|.+++|.|+|+ .+++++....
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l-----------~~fPi~~a~f~p~G~~~i~~s~rrky 281 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL-----------EKFPIQKAEFAPNGHSVIFTSGRRKY 281 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeee-----------ccCccceeeecCCCceEEEecccceE
Confidence 57899999999999998888 9999999999876554443322 236789999999998 8999999999
Q ss_pred EEEEeCCCcceEe--eeeccCC-ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCc
Q 015490 191 LRVFKWPSLEIIL--NESEAHA-SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNED 267 (406)
Q Consensus 191 i~vwd~~~~~~~~--~~~~~~~-~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (406)
++.||+.+.+... ...++.. .+.....++++++|+..+..|.|.+....+++.+..++. .+.+..+.|+.+++.
T Consensus 282 ~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki--eG~v~~~~fsSdsk~- 358 (514)
T KOG2055|consen 282 LYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI--EGVVSDFTFSSDSKE- 358 (514)
T ss_pred EEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee--ccEEeeEEEecCCcE-
Confidence 9999998876432 2222222 678889999999999999999999999999998888764 456889999999975
Q ss_pred eEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCC-CeEEEEEcCCCCEEEEEeCCCcEEEEECCC------ceEEEEeec
Q 015490 268 YVLYIAAITDRGASIVTWNTTTWKRIRTKQVVRE-PVSSFNVSADGKLLAVGTASGDISIIDSSS------LQVRTAVKK 340 (406)
Q Consensus 268 ~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~ 340 (406)
++ ..+.+|.|++||++...+++.+....+ .-+++|.|+++.|+|+|+..|.|.|||.++ .+++..+.
T Consensus 359 ----l~-~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d- 432 (514)
T KOG2055|consen 359 ----LL-ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD- 432 (514)
T ss_pred ----EE-EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh-
Confidence 33 335678999999999999988875432 236788889999999999999999999754 35555554
Q ss_pred ccccceEEEEEcCCCCeEEEEE--CCCcEEEEEecCCcCCCCch
Q 015490 341 AHLGIVTALAFSYDSRALVSAS--MDSSVRVTVIEDKKKSGGLN 382 (406)
Q Consensus 341 ~~~~~v~~~~~sp~~~~l~s~s--~dg~i~iw~~~~~~~~~~~~ 382 (406)
.....|++++|++|++.|+.+| .+..+++-.+.+...-..||
T Consensus 433 NLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP 476 (514)
T KOG2055|consen 433 NLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFP 476 (514)
T ss_pred hhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCC
Confidence 4667899999999999988776 56789999888765544444
No 115
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.2e-23 Score=193.32 Aligned_cols=243 Identities=15% Similarity=0.209 Sum_probs=198.3
Q ss_pred ecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEeeC
Q 015490 110 RTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAGSE 187 (406)
Q Consensus 110 ~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~ 187 (406)
..|+..-+.++|.|+|.+|++++ ++.+++|.-.... +.. ..+. +...|.+++. ++.+|++|+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-e~P------------~ti~~~g~~v~~ia~--~s~~f~~~s~ 74 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE-EEP------------ETIDISGELVSSIAC--YSNHFLTGSE 74 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc-cCC------------chhhccCceeEEEee--cccceEEeec
Confidence 46888899999999999988886 9999998755431 111 1122 3445555554 4558999999
Q ss_pred CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCc
Q 015490 188 NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNED 267 (406)
Q Consensus 188 dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (406)
+++|.+|.+..++.-..+..-.-++++++++-+|++++.||+|-.|++-++.+......+.++ ..++.++.|+|.+.
T Consensus 75 ~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh-~apVl~l~~~p~~~-- 151 (933)
T KOG1274|consen 75 QNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH-DAPVLQLSYDPKGN-- 151 (933)
T ss_pred cceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeeccc-CCceeeeeEcCCCC--
Confidence 999999999888766555555668999999999999999999999999999988888888765 56788999999998
Q ss_pred eEEEEEEEcCCCcEEEEEeCCCceEEEEeeec--------CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee
Q 015490 268 YVLYIAAITDRGASIVTWNTTTWKRIRTKQVV--------REPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK 339 (406)
Q Consensus 268 ~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--------~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 339 (406)
++++..-||.|++||+.++.+..++..- ...+..++|+|+|..+++.+.|+.|.+|+..++.....+.
T Consensus 152 ----fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr 227 (933)
T KOG1274|consen 152 ----FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR 227 (933)
T ss_pred ----EEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec
Confidence 4666678999999999998876665432 2456789999998888888899999999999999888875
Q ss_pred ccc-ccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490 340 KAH-LGIVTALAFSYDSRALVSASMDSSVRVTVIED 374 (406)
Q Consensus 340 ~~~-~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~ 374 (406)
..+ ...+..++|+|+|+|||+++.||.|.|||+++
T Consensus 228 ~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 228 DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred ccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 433 34489999999999999999999999999995
No 116
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=7.5e-24 Score=174.13 Aligned_cols=255 Identities=15% Similarity=0.243 Sum_probs=208.4
Q ss_pred ccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCC
Q 015490 103 DQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGT 180 (406)
Q Consensus 103 ~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~ 180 (406)
.+.++.+.||.+.|..++.......+.+++ |.+.+||.++ ...++..+.+| +.|+++.|++.+.
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~E--------------sg~CL~~Y~GH~GSVNsikfh~s~~ 203 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLE--------------SGACLATYTGHTGSVNSIKFHNSGL 203 (481)
T ss_pred EeehhhhcccccceeeehhhcCCcceeecccccceeEEeec--------------cccceeeecccccceeeEEeccccc
Confidence 466778999999999999988777666665 9999998877 55566666666 8999999999999
Q ss_pred EEEEeeCCCeEEEEeC------CC----------------------------------cceEeeeeccCCceeEEEEccC
Q 015490 181 IFAAGSENGNLRVFKW------PS----------------------------------LEIILNESEAHASVKDLSFSPD 220 (406)
Q Consensus 181 ~l~~~~~dg~i~vwd~------~~----------------------------------~~~~~~~~~~~~~i~~~~~s~~ 220 (406)
++++++.|++-+||.. .. ..++..+.+|...|.+..|...
T Consensus 204 L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g 283 (481)
T KOG0300|consen 204 LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG 283 (481)
T ss_pred eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcC
Confidence 9999999999999972 10 0123456677788999999999
Q ss_pred CCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc-eEEEEeeec
Q 015490 221 GKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW-KRIRTKQVV 299 (406)
Q Consensus 221 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~ 299 (406)
|+.+++++.|.+..+||+++++.+..+.+|.. ..+.++-+|..+ ++++.+.|.+.++||.+.. ..+..|++|
T Consensus 284 g~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~-ELtHcstHptQr------LVvTsSrDtTFRLWDFReaI~sV~VFQGH 356 (481)
T KOG0300|consen 284 GQQMVTASWDRTANLWDVETGEVVNILTGHDS-ELTHCSTHPTQR------LVVTSSRDTTFRLWDFREAIQSVAVFQGH 356 (481)
T ss_pred cceeeeeeccccceeeeeccCceeccccCcch-hccccccCCcce------EEEEeccCceeEeccchhhcceeeeeccc
Confidence 99999999999999999999999999987644 466777888776 5667789999999999843 457889999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCce-EEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCC
Q 015490 300 REPVSSFNVSADGKLLAVGTASGDISIIDSSSLQ-VRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKS 378 (406)
Q Consensus 300 ~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~ 378 (406)
...|+++.|.-+. .+++|+.|.+|++||+++.+ ++.++. ...+++.++.+..+..++.--.+..|++||+.. ..+
T Consensus 357 tdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR--tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG-~Rl 432 (481)
T KOG0300|consen 357 TDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR--TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNG-NRL 432 (481)
T ss_pred ccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee--cCCccceeEeecCCceEEeccCCceEEEEecCC-Ccc
Confidence 9999999998765 57899999999999999865 556664 667899999998888888888888999999954 344
Q ss_pred CCch
Q 015490 379 GGLN 382 (406)
Q Consensus 379 ~~~~ 382 (406)
..+|
T Consensus 433 aRlP 436 (481)
T KOG0300|consen 433 ARLP 436 (481)
T ss_pred ccCC
Confidence 4444
No 117
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.3e-25 Score=202.63 Aligned_cols=236 Identities=19% Similarity=0.293 Sum_probs=205.8
Q ss_pred eEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecc-cccCcEEEEEECCCCCEEEE
Q 015490 107 AELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQL-ENVGQQLALTFDSEGTIFAA 184 (406)
Q Consensus 107 ~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~ 184 (406)
+.+..|...|.++..-..++.+++|+ +..+.+|.+... . .+..+ .|..+|.++.|+++..+|++
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp--~------------~i~S~~~hespIeSl~f~~~E~Llaa 87 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP--N------------AITSLTGHESPIESLTFDTSERLLAA 87 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCC--c------------hhheeeccCCcceeeecCcchhhhcc
Confidence 34567888999999877778888887 555567655421 1 11122 35589999999999999999
Q ss_pred eeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCC
Q 015490 185 GSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLN 264 (406)
Q Consensus 185 ~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (406)
|+.+|+|++||++..+.++.+.+|...+.++.|+|-+.++++++.|+.+++||.+...+.+.+.. +...+..++|+|+|
T Consensus 88 gsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s-~~~vv~~l~lsP~G 166 (825)
T KOG0267|consen 88 GSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS-HTRVVDVLRLSPDG 166 (825)
T ss_pred cccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC-CcceeEEEeecCCC
Confidence 99999999999999999999999999999999999999999999999999999998889888887 66778999999999
Q ss_pred CCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeeccccc
Q 015490 265 NEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLG 344 (406)
Q Consensus 265 ~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 344 (406)
+ +.+.+++|..+++||...++....|..|.+.+.++.|+|..-+++.|+.|+++++||+++.+.+.... ....
T Consensus 167 r------~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~-~~~~ 239 (825)
T KOG0267|consen 167 R------WVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK-PETD 239 (825)
T ss_pred c------eeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccC-CccC
Confidence 8 57888889999999999999999999999999999999999999999999999999999999988886 5678
Q ss_pred ceEEEEEcCCCCeEEEEECC
Q 015490 345 IVTALAFSYDSRALVSASMD 364 (406)
Q Consensus 345 ~v~~~~~sp~~~~l~s~s~d 364 (406)
.|.+..|+|++..+++|..+
T Consensus 240 ~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 240 GVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CceeeeecCCceeeecCchh
Confidence 89999999999988887544
No 118
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.9e-22 Score=165.39 Aligned_cols=280 Identities=11% Similarity=0.068 Sum_probs=202.4
Q ss_pred cccccccccCCCCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cC
Q 015490 56 DEAVADKSDDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QN 134 (406)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~ 134 (406)
++.++...+. +..+.++++.-.| .+.++.++.. .+...-.|..++.+++|.++.. +++|+ |+
T Consensus 13 ~d~IS~v~f~-~~~~~LLvssWDg--------slrlYdv~~~-------~l~~~~~~~~plL~c~F~d~~~-~~~G~~dg 75 (323)
T KOG1036|consen 13 EDGISSVKFS-PSSSDLLVSSWDG--------SLRLYDVPAN-------SLKLKFKHGAPLLDCAFADEST-IVTGGLDG 75 (323)
T ss_pred hhceeeEEEc-CcCCcEEEEeccC--------cEEEEeccch-------hhhhheecCCceeeeeccCCce-EEEeccCc
Confidence 3455566666 4555556554333 3455554443 2233345899999999998654 55555 99
Q ss_pred CeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeE
Q 015490 135 SCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKD 214 (406)
Q Consensus 135 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~ 214 (406)
.++.++++.... .+...|...+.|+.+++....+++|+.|++|++||.+.......+. ....|.+
T Consensus 76 ~vr~~Dln~~~~--------------~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~ 140 (323)
T KOG1036|consen 76 QVRRYDLNTGNE--------------DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYC 140 (323)
T ss_pred eEEEEEecCCcc--------------eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEE
Confidence 999988875432 2223477899999999988889999999999999998744443333 3337888
Q ss_pred EEEccCCCEEEEEeCCCCEEEEEcCCCeeeeec-ccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc---
Q 015490 215 LSFSPDGKFLVSLGNRGPGRVWDLASSAVATPL-AKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW--- 290 (406)
Q Consensus 215 ~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~--- 290 (406)
+..+ ++.|++|+.|..+.+||+++....... ...-...++++++.|++.. .+.++-+|.|.+=.++..
T Consensus 141 ~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eG------y~~sSieGRVavE~~d~s~~~ 212 (323)
T KOG1036|consen 141 MDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEG------YVVSSIEGRVAVEYFDDSEEA 212 (323)
T ss_pred Eecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCc------eEEEeecceEEEEccCCchHH
Confidence 8775 668999999999999999986654422 2233456889999997765 344466888877665544
Q ss_pred -eEEEEeeecC---------CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEE
Q 015490 291 -KRIRTKQVVR---------EPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVS 360 (406)
Q Consensus 291 -~~~~~~~~~~---------~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 360 (406)
+....|+.|. .+|.+++|+|-...+|+|+.||.|.+||+.+.+.+..+. .....|.+++|+.+|..||.
T Consensus 213 ~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~-~~~~SI~slsfs~dG~~LAi 291 (323)
T KOG1036|consen 213 QSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLA-KYETSISSLSFSMDGSLLAI 291 (323)
T ss_pred hhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhcc-CCCCceEEEEeccCCCeEEE
Confidence 3445566663 378999999999999999999999999999999998886 45677999999999999998
Q ss_pred EEC-----CCc-------EEEEEecCCc
Q 015490 361 ASM-----DSS-------VRVTVIEDKK 376 (406)
Q Consensus 361 ~s~-----dg~-------i~iw~~~~~~ 376 (406)
++. ... |.|.++.+.+
T Consensus 292 a~sy~ye~~~~~~~~~~~i~I~~l~d~e 319 (323)
T KOG1036|consen 292 ASSYQYERADTPTHERNAIFIRDLTDYE 319 (323)
T ss_pred EechhhhcCCCCCCCCCceEEEeccccc
Confidence 862 122 6676665543
No 119
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=3.3e-22 Score=183.63 Aligned_cols=260 Identities=22% Similarity=0.286 Sum_probs=204.3
Q ss_pred cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCC-
Q 015490 104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGT- 180 (406)
Q Consensus 104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~- 180 (406)
+.+.+++++...|+++.=+|--+.++.|. +|.+.|+++. ..+.+..+++. +.|+.++|..||+
T Consensus 193 K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK--------------~dkil~sFk~d~g~VtslSFrtDG~p 258 (910)
T KOG1539|consen 193 KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLK--------------FDKILMSFKQDWGRVTSLSFRTDGNP 258 (910)
T ss_pred cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcc--------------cCcEEEEEEccccceeEEEeccCCCe
Confidence 48899999999999999999988888887 8888887766 44556667775 9999999999995
Q ss_pred EEEEeeCCCeEEEEeCCCcceEeeeec-cCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCee----eee---------
Q 015490 181 IFAAGSENGNLRVFKWPSLEIILNESE-AHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAV----ATP--------- 246 (406)
Q Consensus 181 ~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~----~~~--------- 246 (406)
.+++|+..|.+.+||++..+....+.. |.+.|....|.|....+++++.|+.+++|=..++.- ++.
T Consensus 259 ~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~ 338 (910)
T KOG1539|consen 259 LLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPS 338 (910)
T ss_pred eEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCch
Confidence 677778889999999998887776664 446888888888888888888888877763321100 000
Q ss_pred --------------------------------------------------------------------------------
Q 015490 247 -------------------------------------------------------------------------------- 246 (406)
Q Consensus 247 -------------------------------------------------------------------------------- 246 (406)
T Consensus 339 ~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h 418 (910)
T KOG1539|consen 339 CIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAH 418 (910)
T ss_pred heeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEe
Confidence
Q ss_pred --------------------cccC----CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEe---eec
Q 015490 247 --------------------LAKE----NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTK---QVV 299 (406)
Q Consensus 247 --------------------~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~---~~~ 299 (406)
+... .+..+.+++.++.|+ .+..|...|.|-+|++++|-....+ ..|
T Consensus 419 ~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN------F~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah 492 (910)
T KOG1539|consen 419 KGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN------FVFIGYSKGTIDRFNMQSGIHRKSFGDSPAH 492 (910)
T ss_pred cCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc------eEEEeccCCeEEEEEcccCeeecccccCccc
Confidence 0000 112345666666666 3455677899999999999888887 578
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee----------------------------------------
Q 015490 300 REPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK---------------------------------------- 339 (406)
Q Consensus 300 ~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------------------------------------- 339 (406)
..+|+.++...-++.+++++.+|.+.+||..+...+..+.
T Consensus 493 ~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f 572 (910)
T KOG1539|consen 493 KGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREF 572 (910)
T ss_pred cCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHh
Confidence 8999999999999999999999999999987655433322
Q ss_pred cccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCchH
Q 015490 340 KAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLNL 383 (406)
Q Consensus 340 ~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 383 (406)
.+|...|++++|||||++|++++.|++|++||+.++..+..+-+
T Consensus 573 ~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v 616 (910)
T KOG1539|consen 573 WGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV 616 (910)
T ss_pred hccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec
Confidence 47999999999999999999999999999999999988766543
No 120
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.8e-23 Score=180.19 Aligned_cols=221 Identities=18% Similarity=0.221 Sum_probs=178.8
Q ss_pred cCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEeeCC
Q 015490 111 TDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAGSEN 188 (406)
Q Consensus 111 ~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~d 188 (406)
--+++|.|++-+|+|.+|++|+ .+.+.+|.+. ++.. +..+. |-..|+|+.|+.||.+|++|+.|
T Consensus 79 v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWels--sG~L------------L~v~~aHYQ~ITcL~fs~dgs~iiTgskD 144 (476)
T KOG0646|consen 79 VLPGPVHALASSNLGYFLLAGTISGNLYLWELS--SGIL------------LNVLSAHYQSITCLKFSDDGSHIITGSKD 144 (476)
T ss_pred ccccceeeeecCCCceEEEeecccCcEEEEEec--cccH------------HHHHHhhccceeEEEEeCCCcEEEecCCC
Confidence 3468899999999999999986 7766665544 3443 33333 44899999999999999999999
Q ss_pred CeEEEEeCC---------CcceEeeeeccCCceeEEEEccC--CCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEE
Q 015490 189 GNLRVFKWP---------SLEIILNESEAHASVKDLSFSPD--GKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFAS 257 (406)
Q Consensus 189 g~i~vwd~~---------~~~~~~~~~~~~~~i~~~~~s~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 257 (406)
|.|.+|.+. +-+....+..|.-+|+++...+. ..+|+++|.|.++++||+..+..+..+.. ...+.+
T Consensus 145 g~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f--p~si~a 222 (476)
T KOG0646|consen 145 GAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF--PSSIKA 222 (476)
T ss_pred ccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec--CCccee
Confidence 999999872 23456667777779999998765 34899999999999999999998887764 345889
Q ss_pred EEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce----------------EEEEeeecCC--CeEEEEEcCCCCEEEEEe
Q 015490 258 CRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK----------------RIRTKQVVRE--PVSSFNVSADGKLLAVGT 319 (406)
Q Consensus 258 ~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~----------------~~~~~~~~~~--~i~~~~~sp~~~~l~~~~ 319 (406)
++.+|.++. +..|..+|.|.+.++.... ....+.+|.+ .|+|++++-||..|++|+
T Consensus 223 v~lDpae~~------~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd 296 (476)
T KOG0646|consen 223 VALDPAERV------VYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGD 296 (476)
T ss_pred EEEcccccE------EEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeC
Confidence 999999883 5567889999988875422 3556677776 999999999999999999
Q ss_pred CCCcEEEEECCCceEEEEeecccccceEEEEEcCC
Q 015490 320 ASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYD 354 (406)
Q Consensus 320 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~ 354 (406)
.||.|.|||+.+.++++++. ...++|+.+.+.|-
T Consensus 297 ~dg~VcvWdi~S~Q~iRtl~-~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 297 EDGKVCVWDIYSKQCIRTLQ-TSKGPVTNLQINPL 330 (476)
T ss_pred CCCCEEEEecchHHHHHHHh-hhccccceeEeecc
Confidence 99999999999999998885 36788999988553
No 121
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=2.5e-22 Score=164.08 Aligned_cols=271 Identities=10% Similarity=0.042 Sum_probs=204.5
Q ss_pred CcccccccccCCCCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-c
Q 015490 55 KDEAVADKSDDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-Q 133 (406)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~ 133 (406)
+++.+....+++..+..+..+. -.+.+.+++++... .+.+ .....|.++|.+++|+.||..+++|+ |
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~S--------WD~tVR~wevq~~g-~~~~---ka~~~~~~PvL~v~WsddgskVf~g~~D 93 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGS--------WDGTVRIWEVQNSG-QLVP---KAQQSHDGPVLDVCWSDDGSKVFSGGCD 93 (347)
T ss_pred cccchheeEeccccCceEEecc--------cCCceEEEEEecCC-cccc---hhhhccCCCeEEEEEccCCceEEeeccC
Confidence 3456666777775555554332 34567788877653 2222 45667999999999999999999887 9
Q ss_pred CCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCC--EEEEeeCCCeEEEEeCCCcceEeeeeccCCc
Q 015490 134 NSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGT--IFAAGSENGNLRVFKWPSLEIILNESEAHAS 211 (406)
Q Consensus 134 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 211 (406)
+.+++|++... +..+.-.|.++|.++.|-+... .|++|+.|.+|+.||.+....+..+.- ...
T Consensus 94 k~~k~wDL~S~--------------Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeR 158 (347)
T KOG0647|consen 94 KQAKLWDLASG--------------QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PER 158 (347)
T ss_pred CceEEEEccCC--------------CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cce
Confidence 99999887742 3333334778999999987654 899999999999999998887766644 335
Q ss_pred eeEEEEccCCCEEEEEeCCCCEEEEEcCCCee-eeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc
Q 015490 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAV-ATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW 290 (406)
Q Consensus 212 i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~ 290 (406)
++++..- ..+++++..++.|.+|+++.+.. .+.........+++++..++... .+.|+-.|.+.+..++.+
T Consensus 159 vYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~------~alGsiEGrv~iq~id~~ 230 (347)
T KOG0647|consen 159 VYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDG------FALGSIEGRVAIQYIDDP 230 (347)
T ss_pred eeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCc------eEeeeecceEEEEecCCC
Confidence 6666553 34788888899999999976543 33344444556889999998885 256677888888877765
Q ss_pred --eEEEEeeecCC---------CeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEE
Q 015490 291 --KRIRTKQVVRE---------PVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALV 359 (406)
Q Consensus 291 --~~~~~~~~~~~---------~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 359 (406)
+.-..+++|.. .|.+++|+|.-..|++++.||++.+||-+....+.... .|..+|++..|+.+|.+++
T Consensus 231 ~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~-~~~qpItcc~fn~~G~ifa 309 (347)
T KOG0647|consen 231 NPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSE-THPQPITCCSFNRNGSIFA 309 (347)
T ss_pred CccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccC-cCCCccceeEecCCCCEEE
Confidence 55556677752 47789999999999999999999999998877777765 7999999999999999887
Q ss_pred EE
Q 015490 360 SA 361 (406)
Q Consensus 360 s~ 361 (406)
-+
T Consensus 310 YA 311 (347)
T KOG0647|consen 310 YA 311 (347)
T ss_pred EE
Confidence 54
No 122
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=8.4e-24 Score=181.73 Aligned_cols=205 Identities=16% Similarity=0.265 Sum_probs=167.4
Q ss_pred ccccCcEEEEEECCCC-CEEEEeeCCCeEEEEeCCCcc----------eEeeeeccCCceeEEEEccCCC-EEEEEeCCC
Q 015490 164 LENVGQQLALTFDSEG-TIFAAGSENGNLRVFKWPSLE----------IILNESEAHASVKDLSFSPDGK-FLVSLGNRG 231 (406)
Q Consensus 164 ~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~vwd~~~~~----------~~~~~~~~~~~i~~~~~s~~~~-~l~s~s~d~ 231 (406)
+.|.+.|+.+.+-|+. ..+|+++..+.|.|||..+-. .-..+.+|...-++++|++... .|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 4577899999999965 677788889999999984322 1235677777678899998644 799999999
Q ss_pred CEEEEEcCCCee------eeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC--CceEEEEeeecCCCe
Q 015490 232 PGRVWDLASSAV------ATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT--TWKRIRTKQVVREPV 303 (406)
Q Consensus 232 ~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~--~~~~~~~~~~~~~~i 303 (406)
+|++||+..... .......+...+..++|++.... ++++.+.|+.+.+||+| +.++......|.+.+
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-----lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~v 275 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-----LFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEV 275 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchh-----hheeecCCCeEEEEEcCCCCCCCcccccccCCce
Confidence 999999975433 12223356778999999999886 66777899999999999 566777788899999
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEEECCCce-EEEEeecccccceEEEEEcCC-CCeEEEEECCCcEEEEEecC
Q 015490 304 SSFNVSA-DGKLLAVGTASGDISIIDSSSLQ-VRTAVKKAHLGIVTALAFSYD-SRALVSASMDSSVRVTVIED 374 (406)
Q Consensus 304 ~~~~~sp-~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~sp~-~~~l~s~s~dg~i~iw~~~~ 374 (406)
.|++|+| ++..||+|+.|++|.+||+++.. ++..+. +|...|.++.|||. ...|++++.|+.+.|||+..
T Consensus 276 n~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e-~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 276 NCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE-GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred eEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc-CCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 9999999 66788999999999999999854 556664 89999999999996 46789999999999999975
No 123
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=2.6e-22 Score=180.79 Aligned_cols=252 Identities=12% Similarity=0.153 Sum_probs=200.3
Q ss_pred EEEEecCCCCccccceeEEecCCCCceE-EEEcc-CCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc
Q 015490 91 LSHFDFASNSLSDQPVAELRTDSDLPYR-MAIHP-HGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV 167 (406)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~sp-~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (406)
+..|+...+.+ .....+.+|.+.|.+ +++-+ ++-.+++|+ |..+.+|..+ ...++..+.+|
T Consensus 37 ~~vw~~~~~~~--l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~--------------~~~P~~~LkgH 100 (745)
T KOG0301|consen 37 VKVWAKKGKQY--LETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLS--------------QAEPLYTLKGH 100 (745)
T ss_pred eeeeeccCccc--ccceecccCcceeeccceeccccCcceEeecccceEEEEecC--------------CCCchhhhhcc
Confidence 44455544333 234567778888777 88875 333466666 7777766555 34455555555
Q ss_pred -CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeee
Q 015490 168 -GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATP 246 (406)
Q Consensus 168 -~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 246 (406)
..|.|++...++. +++|+.|.++++|.. +++...+.+|...|++++.-|++ .+++|+.|.+|++|.- ++.+++
T Consensus 101 ~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~t 174 (745)
T KOG0301|consen 101 KSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKT 174 (745)
T ss_pred ccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhh
Confidence 8899998888877 899999999999985 45566688999999999999988 7899999999999985 677888
Q ss_pred cccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 015490 247 LAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISI 326 (406)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i 326 (406)
+.+ |...|+.+++-+++. +++++.||.|++|++ ++..+.+..+|...+++++..+++..++++++|++++|
T Consensus 175 f~g-HtD~VRgL~vl~~~~-------flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlri 245 (745)
T KOG0301|consen 175 FSG-HTDCVRGLAVLDDSH-------FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRI 245 (745)
T ss_pred hcc-chhheeeeEEecCCC-------eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEE
Confidence 887 566799999999876 366789999999999 77889999999999999998888899999999999999
Q ss_pred EECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490 327 IDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK 377 (406)
Q Consensus 327 ~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~ 377 (406)
|+.. .+...+. .....|+++.+-++|. +++|+.||.||||..+..+.
T Consensus 246 W~~~--e~~q~I~-lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R~ 292 (745)
T KOG0301|consen 246 WKKD--ECVQVIT-LPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDRK 292 (745)
T ss_pred eecC--ceEEEEe-cCccceEEEEEeeCCC-EEEeccCceEEEEEeccccc
Confidence 9987 6666664 2344799999998887 77888999999999876544
No 124
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=4.1e-22 Score=163.27 Aligned_cols=250 Identities=16% Similarity=0.227 Sum_probs=182.7
Q ss_pred ecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECC--CCCEEEEe
Q 015490 110 RTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDS--EGTIFAAG 185 (406)
Q Consensus 110 ~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~--~g~~l~~~ 185 (406)
.+|.+-|.++.|.+.|+++++++ |++++||+.+..++.-. +....+ |.+.|..+.|.+ -|+.+|++
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~----------~Ts~Wrah~~Si~rV~WAhPEfGqvvA~c 79 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWS----------CTSSWRAHDGSIWRVVWAHPEFGQVVATC 79 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceE----------EeeeEEecCCcEEEEEecCccccceEEEE
Confidence 47889999999999999999997 99999998754433211 111222 457899999976 57999999
Q ss_pred eCCCeEEEEeCC---------CcceEeeeeccCCceeEEEEccC--CCEEEEEeCCCCEEEEEcCCCee------eeecc
Q 015490 186 SENGNLRVFKWP---------SLEIILNESEAHASVKDLSFSPD--GKFLVSLGNRGPGRVWDLASSAV------ATPLA 248 (406)
Q Consensus 186 ~~dg~i~vwd~~---------~~~~~~~~~~~~~~i~~~~~s~~--~~~l~s~s~d~~i~iwd~~~~~~------~~~~~ 248 (406)
+.|+++.||.=. .......+......|+++.|.|. |-.+++++.||.+|||+.-..-. ...+.
T Consensus 80 S~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~ 159 (361)
T KOG2445|consen 80 SYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQ 159 (361)
T ss_pred ecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhh
Confidence 999999999742 11233445556669999999984 66899999999999998754322 12221
Q ss_pred ------cCCcceEEEEEEEcCCCCceEEEEEEEcCC----CcEEEEEeCCC----ceEEEEeeecCCCeEEEEEcCC---
Q 015490 249 ------KENDELFASCRFSPLNNEDYVLYIAAITDR----GASIVTWNTTT----WKRIRTKQVVREPVSSFNVSAD--- 311 (406)
Q Consensus 249 ------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~i~~~d~~~----~~~~~~~~~~~~~i~~~~~sp~--- 311 (406)
+.+.....|+.|+|..-+... +++...+ -+.+++|.... ...+.++..|..+|+.++|.|+
T Consensus 160 ~~~~pp~~~~~~~~CvsWn~sr~~~p~--iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr 237 (361)
T KOG2445|consen 160 NVIDPPGKNKQPCFCVSWNPSRMHEPL--IAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGR 237 (361)
T ss_pred hccCCcccccCcceEEeeccccccCce--EEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCC
Confidence 223445678999976544222 2222222 24677776532 3456677788999999999995
Q ss_pred -CCEEEEEeCCCcEEEEECCCc--------------------eEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEE
Q 015490 312 -GKLLAVGTASGDISIIDSSSL--------------------QVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVT 370 (406)
Q Consensus 312 -~~~l~~~~~dg~i~i~d~~~~--------------------~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw 370 (406)
-..||+++.|| |+||.+... +.+..+ ..|.+.|+.+.|.-.|..|++.+.||+||+|
T Consensus 238 ~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~-~~H~~~VWrv~wNmtGtiLsStGdDG~VRLW 315 (361)
T KOG2445|consen 238 SYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL-DDHNGEVWRVRWNMTGTILSSTGDDGCVRLW 315 (361)
T ss_pred ceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeec-cCCCCceEEEEEeeeeeEEeecCCCceeeeh
Confidence 34799999999 999998731 123334 4899999999999999999999999999999
Q ss_pred Eec
Q 015490 371 VIE 373 (406)
Q Consensus 371 ~~~ 373 (406)
...
T Consensus 316 kan 318 (361)
T KOG2445|consen 316 KAN 318 (361)
T ss_pred hhh
Confidence 864
No 125
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=4.6e-23 Score=167.82 Aligned_cols=207 Identities=23% Similarity=0.294 Sum_probs=167.5
Q ss_pred ccCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCcc----------eEe-----eeeccCCceeEEEEcc-CCCEEEEEe
Q 015490 166 NVGQQLALTFDS-EGTIFAAGSENGNLRVFKWPSLE----------IIL-----NESEAHASVKDLSFSP-DGKFLVSLG 228 (406)
Q Consensus 166 ~~~~v~~~~~s~-~g~~l~~~~~dg~i~vwd~~~~~----------~~~-----~~~~~~~~i~~~~~s~-~~~~l~s~s 228 (406)
|.+.|+++...+ .|+++++|+.||.|.+||+++-. ... .-.+|.-.|.++.|-| |...+.+++
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssS 121 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSS 121 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccc
Confidence 557788888877 68999999999999999996432 011 0112333899999998 555788889
Q ss_pred CCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEE
Q 015490 229 NRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNV 308 (406)
Q Consensus 229 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 308 (406)
-|.++++||..+.+....+... ..|.+-+++|-... -.+++++..+..|++-|+.+|.....+.+|...|.++.|
T Consensus 122 FDhtlKVWDtnTlQ~a~~F~me--~~VYshamSp~a~s---HcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 122 FDHTLKVWDTNTLQEAVDFKME--GKVYSHAMSPMAMS---HCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW 196 (397)
T ss_pred ccceEEEeecccceeeEEeecC--ceeehhhcChhhhc---ceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence 9999999999998888777643 45778888887653 246788889999999999999999999999999999999
Q ss_pred cCCCCE-EEEEeCCCcEEEEECCCc-eEEEEe-------------ecccccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490 309 SADGKL-LAVGTASGDISIIDSSSL-QVRTAV-------------KKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIE 373 (406)
Q Consensus 309 sp~~~~-l~~~~~dg~i~i~d~~~~-~~~~~~-------------~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~ 373 (406)
+|...+ |++|+.||.|++||++.. .+...+ ...|.+.|.+++|+.++.++++++.|..+++|+..
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNME 276 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecc
Confidence 998775 678888999999999743 122111 13688899999999999999999999999999998
Q ss_pred CCcC
Q 015490 374 DKKK 377 (406)
Q Consensus 374 ~~~~ 377 (406)
+|+.
T Consensus 277 ~G~n 280 (397)
T KOG4283|consen 277 SGRN 280 (397)
T ss_pred cCcc
Confidence 8764
No 126
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.91 E-value=1.5e-22 Score=166.82 Aligned_cols=257 Identities=16% Similarity=0.180 Sum_probs=188.0
Q ss_pred eEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEEC-------CCCCEEEEeeCC
Q 015490 117 YRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFD-------SEGTIFAAGSEN 188 (406)
Q Consensus 117 ~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-------~~g~~l~~~~~d 188 (406)
..+.|+|||..|++.+ ++.+++|.+............................|...+|- |+..++++.+.+
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 5679999999999887 99999998765432221111111011112222233556666663 677899999999
Q ss_pred CeEEEEeCCCcceEeeeecc--CC---ceeEEEEccCCCEEEEEeCCCCEEEEEc-CCCeeeeec------ccCCcceEE
Q 015490 189 GNLRVFKWPSLEIILNESEA--HA---SVKDLSFSPDGKFLVSLGNRGPGRVWDL-ASSAVATPL------AKENDELFA 256 (406)
Q Consensus 189 g~i~vwd~~~~~~~~~~~~~--~~---~i~~~~~s~~~~~l~s~s~d~~i~iwd~-~~~~~~~~~------~~~~~~~~~ 256 (406)
.-|++||.-+|+....+..- .. ...+++|+|||.+|++| ....|++||+ +.|+..... +......+.
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis 211 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS 211 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence 99999999999877665432 22 56789999999999855 5679999999 555432211 122356788
Q ss_pred EEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCC-ceE
Q 015490 257 SCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA-SGDISIIDSSS-LQV 334 (406)
Q Consensus 257 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~-~~~ 334 (406)
+++|+|.... ..+.++....+-+|.-..+.++..+-+|.+.|+.++|.++|+.|++|.. |..|..||++. ..+
T Consensus 212 c~a~sP~~~~-----~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p 286 (406)
T KOG2919|consen 212 CFAFSPMDSK-----TLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP 286 (406)
T ss_pred eeeccCCCCc-----ceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence 9999999886 5677778888888888888899999999999999999999999999987 77899999986 445
Q ss_pred EEEeeccccc-ceEEEE--EcCCCCeEEEEECCCcEEEEEecC-CcCCCC
Q 015490 335 RTAVKKAHLG-IVTALA--FSYDSRALVSASMDSSVRVTVIED-KKKSGG 380 (406)
Q Consensus 335 ~~~~~~~~~~-~v~~~~--~sp~~~~l~s~s~dg~i~iw~~~~-~~~~~~ 380 (406)
+..+. .|.+ .=..|. ..|++++|++|+.||.|++||+++ ++.+..
T Consensus 287 v~~L~-rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv 335 (406)
T KOG2919|consen 287 VYALE-RHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSV 335 (406)
T ss_pred hhhhh-hhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccc
Confidence 55554 4544 223444 467899999999999999999998 554433
No 127
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.91 E-value=3.8e-22 Score=162.10 Aligned_cols=273 Identities=16% Similarity=0.231 Sum_probs=205.0
Q ss_pred CccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-c--------CCeEEEEEecccccceeecceec
Q 015490 86 RNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-Q--------NSCRLFEWDEVENTEIRRLGVKI 156 (406)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~--------~~~~i~~~~~~~~~~~~~~~~~~ 156 (406)
.|.+.+..++.+.+.+ ....+..|.+.|..++-+|..+.+++.. . ....||.+....+.... .
T Consensus 39 dNqVhll~~d~e~s~l---~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~-----~ 110 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSEL---LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNS-----S 110 (370)
T ss_pred cceeEEEEecCccchh---hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcccc-----c
Confidence 4888999999988765 3346778899999999999877666543 2 12456665433222000 0
Q ss_pred cceeeeccc--ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcce-Eeeee-----ccCCceeEEEEcc--CCCEEEE
Q 015490 157 SEKVLSQLE--NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEI-ILNES-----EAHASVKDLSFSP--DGKFLVS 226 (406)
Q Consensus 157 ~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~-~~~~~-----~~~~~i~~~~~s~--~~~~l~s 226 (406)
.-+++..+. +.+.|.|+.|.|++..+++-. |..|.+|+++.+.. +..+. .+....++-+|+| |++.+++
T Consensus 111 tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t 189 (370)
T KOG1007|consen 111 TLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT 189 (370)
T ss_pred hhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE
Confidence 112222222 347899999999999888765 78999999987665 32222 1233678889998 7888876
Q ss_pred EeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc-eEEEEeeecCCCeEE
Q 015490 227 LGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW-KRIRTKQVVREPVSS 305 (406)
Q Consensus 227 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~i~~ 305 (406)
.+ |+++..||+++.+....+...|+..+..+.|+|+.++ +++++++|+.|++||.+.- .++.++..|...+.+
T Consensus 190 t~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~-----~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~ 263 (370)
T KOG1007|consen 190 TS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQH-----ILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWA 263 (370)
T ss_pred eC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceE-----EEEEcCCCccEEEEeccCCCccccccCCCceEEEE
Confidence 65 7899999999999988898888889999999999886 7889999999999999864 468889999999999
Q ss_pred EEEcCC-CCEEEEEeCCCcEEEEECCCce-----------------------------EEEEeecccccceEEEEEcCCC
Q 015490 306 FNVSAD-GKLLAVGTASGDISIIDSSSLQ-----------------------------VRTAVKKAHLGIVTALAFSYDS 355 (406)
Q Consensus 306 ~~~sp~-~~~l~~~~~dg~i~i~d~~~~~-----------------------------~~~~~~~~~~~~v~~~~~sp~~ 355 (406)
+.|+|. .++|++|+.|..|.+|....-. .+.++ ..|...|.+++||.-.
T Consensus 264 VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty-dehEDSVY~~aWSsad 342 (370)
T KOG1007|consen 264 VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY-DEHEDSVYALAWSSAD 342 (370)
T ss_pred EEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc-cccccceEEEeeccCC
Confidence 999994 4688899999999999764211 11233 3688999999999855
Q ss_pred C-eEEEEECCCcEEEEEecC
Q 015490 356 R-ALVSASMDSSVRVTVIED 374 (406)
Q Consensus 356 ~-~l~s~s~dg~i~iw~~~~ 374 (406)
. .+++-|.||++.|=.+..
T Consensus 343 PWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 343 PWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred CeeEEEeccCceEEeecCCh
Confidence 4 567889999998877654
No 128
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=3.6e-23 Score=188.45 Aligned_cols=243 Identities=18% Similarity=0.243 Sum_probs=184.1
Q ss_pred ceEEEEccC-CCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecc-cccCcEEEEEECCC-CCEEEEeeCCCeE
Q 015490 116 PYRMAIHPH-GDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQL-ENVGQQLALTFDSE-GTIFAAGSENGNL 191 (406)
Q Consensus 116 v~~~~~sp~-~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~-g~~l~~~~~dg~i 191 (406)
+..+.|+.. .++|++++ .+.+.+|++.... ..+.+..+ +|...++++.|++. ..+|++|+.||+|
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~-----------rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~v 158 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSI-----------RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTV 158 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccc-----------cchhhhHhhhhccceeeeeeccCCccEEEecCCCceE
Confidence 456677643 34666665 7888888776521 12222333 35578999999984 4789999999999
Q ss_pred EEEeCCCcceEeeeeccCCceeEEEEcc-CCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEE
Q 015490 192 RVFKWPSLEIILNESEAHASVKDLSFSP-DGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVL 270 (406)
Q Consensus 192 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 270 (406)
++||++..+....+.+....|++++|+| .+..++++.+.|.+.+||++...........|.+++.++.|+|++.
T Consensus 159 K~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~----- 233 (839)
T KOG0269|consen 159 KCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE----- 233 (839)
T ss_pred EEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCc-----
Confidence 9999998888888877667999999999 5678999999999999999976544333334567899999999665
Q ss_pred EEEEEcCCCcEEEEEeCCCceEEEEeeec-CCCeEEEEEcCCCC-EEEEEeC--CCcEEEEECCCceEEEEeecccccce
Q 015490 271 YIAAITDRGASIVTWNTTTWKRIRTKQVV-REPVSSFNVSADGK-LLAVGTA--SGDISIIDSSSLQVRTAVKKAHLGIV 346 (406)
Q Consensus 271 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~i~~~~~sp~~~-~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~v 346 (406)
++|+|+.|+.|++||+.+.+.-.....+ ..++.++.|-|+.. .||+++. |-.|+|||++..-........|...+
T Consensus 234 -~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~v 312 (839)
T KOG0269|consen 234 -WLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSV 312 (839)
T ss_pred -eeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccc
Confidence 6789999999999999876543333333 37899999999765 4666554 78899999986554444334899999
Q ss_pred EEEEEcC-CCCeEEEEECCCcEEEEEecCC
Q 015490 347 TALAFSY-DSRALVSASMDSSVRVTVIEDK 375 (406)
Q Consensus 347 ~~~~~sp-~~~~l~s~s~dg~i~iw~~~~~ 375 (406)
+.++|.. |...|.+++.||+|..-.+++.
T Consensus 313 t~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 313 TGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred cceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 9999976 4567889999999877666654
No 129
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.91 E-value=5.7e-22 Score=161.22 Aligned_cols=274 Identities=12% Similarity=0.138 Sum_probs=199.0
Q ss_pred CCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCC----eEEEEecCCeEEEEEecccccceeecceeccc
Q 015490 83 SGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGD----GIICALQNSCRLFEWDEVENTEIRRLGVKISE 158 (406)
Q Consensus 83 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~----~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 158 (406)
.-..|++.+..++.++..+....- -.|.-+++.+.|.|+.. .|++.++..+|+|.....+........+.
T Consensus 69 Ee~~Nkvqiv~ld~~s~e~~~~a~---fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~--- 142 (364)
T KOG0290|consen 69 EEYNNKVQIVQLDEDSGELVEDAN---FDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLN--- 142 (364)
T ss_pred cccCCeeEEEEEccCCCceeccCC---CCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhc---
Confidence 345689999999977655433222 47899999999999874 35555677889998875433222111110
Q ss_pred eeeecccccCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCcc---eEeeeeccCCceeEEEEccCCC-EEEEEeCCCCE
Q 015490 159 KVLSQLENVGQQLALTFDS-EGTIFAAGSENGNLRVFKWPSLE---IILNESEAHASVKDLSFSPDGK-FLVSLGNRGPG 233 (406)
Q Consensus 159 ~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i 233 (406)
.-+.-+...++++..|+. |-+++.+.+-|-+..|||++++. ....+..|..+|.+++|...+. .+++.+.||.+
T Consensus 143 -~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSv 221 (364)
T KOG0290|consen 143 -NNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSV 221 (364)
T ss_pred -cCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcE
Confidence 011223447889999987 66899999999999999999873 3556778888999999998654 78999999999
Q ss_pred EEEEcCCCeeeeec-ccCC-cceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc-eEEEEeeecCCCeEEEEEcC
Q 015490 234 RVWDLASSAVATPL-AKEN-DELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW-KRIRTKQVVREPVSSFNVSA 310 (406)
Q Consensus 234 ~iwd~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~i~~~~~sp 310 (406)
|+||++..+....+ .... ..+...++|++...+ |++........|.+.|++.. .++.+++.|.+.|..++|.|
T Consensus 222 RmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpn----ymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaP 297 (364)
T KOG0290|consen 222 RMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPN----YMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAP 297 (364)
T ss_pred EEEEecccccceEEecCCCCCCcceeeccCcCCch----HHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecC
Confidence 99999986654333 2222 455667888887775 44555566788999999864 56888999999999999999
Q ss_pred C-CCEEEEEeCCCcEEEEECCCceE------EEEeecccccceEEEEEcCC-CCeEEEEECCCcEEEE
Q 015490 311 D-GKLLAVGTASGDISIIDSSSLQV------RTAVKKAHLGIVTALAFSYD-SRALVSASMDSSVRVT 370 (406)
Q Consensus 311 ~-~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~~v~~~~~sp~-~~~l~s~s~dg~i~iw 370 (406)
. ...|++++.|..+.+||+...-. +..+ ...+.|+.++|++. +.+++.+. ++++.+-
T Consensus 298 hS~~hictaGDD~qaliWDl~q~~~~~~~dPilay--~a~~EVNqi~Ws~~~~Dwiai~~-~kkleiL 362 (364)
T KOG0290|consen 298 HSSSHICTAGDDCQALIWDLQQMPRENGEDPILAY--TAGGEVNQIQWSSSQPDWIAICF-GKKLEIL 362 (364)
T ss_pred CCCceeeecCCcceEEEEecccccccCCCCchhhh--hccceeeeeeecccCCCEEEEEe-cCeeeEE
Confidence 5 56899999999999999975322 2222 25678999999974 56666654 4555543
No 130
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=1.1e-22 Score=176.47 Aligned_cols=245 Identities=13% Similarity=0.172 Sum_probs=194.7
Q ss_pred CCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeE
Q 015490 114 DLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNL 191 (406)
Q Consensus 114 ~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i 191 (406)
..+.++.|+.....+++.. |..+++|.-+...++ ...+....+. .-.|++......++++|+..+.|
T Consensus 35 pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~----------Vp~~~k~~gd-~~~Cv~~~s~S~y~~sgG~~~~V 103 (673)
T KOG4378|consen 35 PGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPE----------VPRVRKLTGD-NAFCVACASQSLYEISGGQSGCV 103 (673)
T ss_pred CcceeeeccccceEEEeecCCceeEEEecccCCCCc----------cceeeccccc-hHHHHhhhhcceeeeccCcCcee
Confidence 3488999988765433333 455555544433221 1112222222 34455555555899999999999
Q ss_pred EEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEE
Q 015490 192 RVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271 (406)
Q Consensus 192 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 271 (406)
+|||++...+.+.+..|...|+++.++....+||+++..|.|.|..+.++.....+....+..++-+.|++..+.
T Consensus 104 kiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~----- 178 (673)
T KOG4378|consen 104 KIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRF----- 178 (673)
T ss_pred eehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccce-----
Confidence 999999777788888888999999999999999999999999999999998888888777778889999999885
Q ss_pred EEEEcCCCcEEEEEeCCCceEEEE-eeecCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEE
Q 015490 272 IAAITDRGASIVTWNTTTWKRIRT-KQVVREPVSSFNVSA-DGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTAL 349 (406)
Q Consensus 272 ~~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 349 (406)
++.+.+.+|.|.+||.....+... ...|..+...+||+| +..+|++.+.|..|.+||.........+. ...+...+
T Consensus 179 lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~--y~~Plstv 256 (673)
T KOG4378|consen 179 LLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT--YSHPLSTV 256 (673)
T ss_pred eeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee--ecCCccee
Confidence 667778999999999988776554 356888999999999 45678888999999999999877777774 56689999
Q ss_pred EEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490 350 AFSYDSRALVSASMDSSVRVTVIEDKK 376 (406)
Q Consensus 350 ~~sp~~~~l~s~s~dg~i~iw~~~~~~ 376 (406)
+|+++|.+|+.|+..|.|..||++..+
T Consensus 257 af~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 257 AFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred eecCCceEEEeecCCceEEEEecccCC
Confidence 999999999999999999999998654
No 131
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=4.6e-21 Score=166.90 Aligned_cols=279 Identities=18% Similarity=0.178 Sum_probs=198.1
Q ss_pred cccccccCCCCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCC-CCceEEEEccCCCeEEEEecCCe
Q 015490 58 AVADKSDDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDS-DLPYRMAIHPHGDGIICALQNSC 136 (406)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~sp~~~~l~~~~~~~~ 136 (406)
.+-...+.|-+.+.+++.|- -+++-|+...+.+.. ....++.++ .-|.|++|.++|+.+-.-+++.+
T Consensus 202 ~v~~a~FHPtd~nliit~Gk-----------~H~~Fw~~~~~~l~k-~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i 269 (626)
T KOG2106|consen 202 VVFLATFHPTDPNLIITCGK-----------GHLYFWTLRGGSLVK-RQGIFEKREKKFVLCVTFLENGDVITGDSGGNI 269 (626)
T ss_pred eEEEEEeccCCCcEEEEeCC-----------ceEEEEEccCCceEE-EeeccccccceEEEEEEEcCCCCEEeecCCceE
Confidence 33444555666677666542 267778887766533 233333332 67999999999984433236666
Q ss_pred EEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc----------------
Q 015490 137 RLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLE---------------- 200 (406)
Q Consensus 137 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~---------------- 200 (406)
.||.- ..... ..+.+.|.+.|.+++...+|.+| +|+.|..|..||-.-.+
T Consensus 270 ~Iw~~--~~~~~-----------~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv 335 (626)
T KOG2106|consen 270 LIWSK--GTNRI-----------SKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTV 335 (626)
T ss_pred EEEeC--CCceE-----------EeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCCeeEE
Confidence 66544 32221 11223577999999999999766 59999999999831000
Q ss_pred ------------------------eEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEE
Q 015490 201 ------------------------IILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFA 256 (406)
Q Consensus 201 ------------------------~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 256 (406)
......+|......++.+|+..++++++.|+.+++|+ ..+..-... ...+..
T Consensus 336 ~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~--~~d~~~ 411 (626)
T KOG2106|consen 336 AEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI--IEDPAE 411 (626)
T ss_pred ecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE--ecCcee
Confidence 0112234555778899999999999999999999999 333332222 234577
Q ss_pred EEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc-eEE
Q 015490 257 SCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSL-QVR 335 (406)
Q Consensus 257 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~-~~~ 335 (406)
++.|+|.+ . ++.+...|...+.|.++...+..... ..+++++.|+|+|.+||+|+.|+.|+||.+... ...
T Consensus 412 ~~~fhpsg-~------va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y 483 (626)
T KOG2106|consen 412 CADFHPSG-V------VAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKY 483 (626)
T ss_pred EeeccCcc-e------EEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEE
Confidence 99999998 3 46667789999999999655555444 789999999999999999999999999998654 333
Q ss_pred EEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490 336 TAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED 374 (406)
Q Consensus 336 ~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~ 374 (406)
......+..+|+.+.||+|+++|.+-+.|-.|..|.-..
T Consensus 484 ~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~ 522 (626)
T KOG2106|consen 484 SRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSE 522 (626)
T ss_pred EEeeeecCceeEEeeecCCCceEEeccCceEEEEEcccc
Confidence 344334558899999999999999999999999994433
No 132
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.6e-21 Score=181.11 Aligned_cols=261 Identities=16% Similarity=0.261 Sum_probs=197.7
Q ss_pred CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccc
Q 015490 68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVEN 146 (406)
Q Consensus 68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~ 146 (406)
++.+++++|..|. +..|+..... .....+.-+...|.+++... .+|++++ ++++.+|.++....
T Consensus 24 ~gefi~tcgsdg~----------ir~~~~~sd~---e~P~ti~~~g~~v~~ia~~s--~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 24 DGEFICTCGSDGD----------IRKWKTNSDE---EEPETIDISGELVSSIACYS--NHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred CCCEEEEecCCCc----------eEEeecCCcc---cCCchhhccCceeEEEeecc--cceEEeeccceEEEeeCCCCCc
Confidence 6778888876664 3344433321 11222223777788887754 4777776 89999988875432
Q ss_pred c-ceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEE
Q 015490 147 T-EIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLV 225 (406)
Q Consensus 147 ~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 225 (406)
. .+.+ ..-++++++|+.+|+++|.|+.|-.|++.++.+......+.+|..+|.++.|+|++++||
T Consensus 89 ~~iL~R--------------ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLA 154 (933)
T KOG1274|consen 89 DTILAR--------------FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLA 154 (933)
T ss_pred cceeee--------------eeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEE
Confidence 2 1121 234688999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCEEEEEcCCCeeeeeccc-------CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeee
Q 015490 226 SLGNRGPGRVWDLASSAVATPLAK-------ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV 298 (406)
Q Consensus 226 s~s~d~~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 298 (406)
+.+.||.|++||+.++.....+.. .....+..++|+|++.+ ++....++.|++|+..++.....+..
T Consensus 155 vss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~------la~~~~d~~Vkvy~r~~we~~f~Lr~ 228 (933)
T KOG1274|consen 155 VSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGT------LAVPPVDNTVKVYSRKGWELQFKLRD 228 (933)
T ss_pred EEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCe------EEeeccCCeEEEEccCCceeheeecc
Confidence 999999999999999887666543 12445778999999875 23335689999999999998877754
Q ss_pred c--CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEE
Q 015490 299 V--REPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVR 368 (406)
Q Consensus 299 ~--~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~ 368 (406)
. ...+..+.|+|+|+|||+++.||.|.|||.++... ......|.+++|.|++..+-.-...|...
T Consensus 229 ~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~ 295 (933)
T KOG1274|consen 229 KLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-----HEFKRAVCCEAWKPNANAITLITALGTLG 295 (933)
T ss_pred cccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-----ccccceeEEEecCCCCCeeEEEeeccccc
Confidence 3 34489999999999999999999999999998322 12446799999999887654444444333
No 133
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=2.9e-22 Score=173.99 Aligned_cols=220 Identities=16% Similarity=0.222 Sum_probs=180.5
Q ss_pred CceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEeeCCCeEE
Q 015490 115 LPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAGSENGNLR 192 (406)
Q Consensus 115 ~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~i~ 192 (406)
.-.|++......++++|+ .+.++||++... .+.+.+. |...|+++.++....+||+++..|.|.
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k--------------l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdii 146 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAK--------------LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDII 146 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHH--------------HHhhhccCCcceeEEEEecCCcceeEEeccCCcEE
Confidence 446666666668889888 889999887621 2222333 448899999999999999999999999
Q ss_pred EEeCCCcceEeeeeccCC-ceeEEEEccCCCE-EEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEE
Q 015490 193 VFKWPSLEIILNESEAHA-SVKDLSFSPDGKF-LVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVL 270 (406)
Q Consensus 193 vwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~-l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 270 (406)
|..+.++.....+....+ .|+-+.|+|..+. |.+++++|.|.+||+....+...+...|..+...++|+|....
T Consensus 147 ih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~---- 222 (673)
T KOG4378|consen 147 IHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEA---- 222 (673)
T ss_pred EEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccc----
Confidence 999998887766655534 6779999998774 5667899999999999888888887778888899999999985
Q ss_pred EEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCce-EEEEeecccccceEEE
Q 015490 271 YIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQ-VRTAVKKAHLGIVTAL 349 (406)
Q Consensus 271 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~ 349 (406)
++++.+.|..|.+||.+..+....+.. ..+.+.++|+++|.+|+.|+..|.|..||++..+ ++..+ ..|...|+++
T Consensus 223 -l~vsVG~Dkki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~-sah~~sVt~v 299 (673)
T KOG4378|consen 223 -LLVSVGYDKKINIYDIRSQASTDRLTY-SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVR-SAHDASVTRV 299 (673)
T ss_pred -eEEEecccceEEEeecccccccceeee-cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEe-eecccceeEE
Confidence 667778999999999998777776654 4688999999999999999999999999998755 45555 4899999999
Q ss_pred EEcCCC
Q 015490 350 AFSYDS 355 (406)
Q Consensus 350 ~~sp~~ 355 (406)
+|-|..
T Consensus 300 afq~s~ 305 (673)
T KOG4378|consen 300 AFQPSP 305 (673)
T ss_pred Eeeecc
Confidence 998764
No 134
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=3.7e-23 Score=196.29 Aligned_cols=279 Identities=18% Similarity=0.276 Sum_probs=212.0
Q ss_pred CcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCe---EEEEe--cCCeEEEEEecc-cccceeecceecc
Q 015490 84 GIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDG---IICAL--QNSCRLFEWDEV-ENTEIRRLGVKIS 157 (406)
Q Consensus 84 g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~---l~~~~--~~~~~i~~~~~~-~~~~~~~~~~~~~ 157 (406)
+....++++.++........+++..+.. ...-+.++|.+.|.. |++|+ ||.+.+|+-+.. .+. .
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s~~s-~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~---------~ 105 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGSLQS-SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANA---------S 105 (1049)
T ss_pred ccccccceeeecccCccccccccccccc-cccceeeeecccCCCccceeeccccCCceEEecchhhccCc---------c
Confidence 4566788888887665533334444432 345689999998877 56655 888888876642 111 1
Q ss_pred ceeee-cccccCcEEEEEECCCC-CEEEEeeCCCeEEEEeCCCcceEeeeec--cCCceeEEEEccC-CCEEEEEeCCCC
Q 015490 158 EKVLS-QLENVGQQLALTFDSEG-TIFAAGSENGNLRVFKWPSLEIILNESE--AHASVKDLSFSPD-GKFLVSLGNRGP 232 (406)
Q Consensus 158 ~~~~~-~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~i~~~~~s~~-~~~l~s~s~d~~ 232 (406)
...+. .-.|++.|..+.|++.. ++||+|+.||.|.|||+.+.+....... ..+.|.+++|+.. .+.|++++.+|.
T Consensus 106 ~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~ 185 (1049)
T KOG0307|consen 106 EEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGR 185 (1049)
T ss_pred hHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCC
Confidence 22222 23466999999999965 5999999999999999987665544422 2348999999875 446888889999
Q ss_pred EEEEEcCCCeeeeecccCCc-ceEEEEEEEcCCCCceEEEEEEEc-CCCcEEEEEeCCCc-eEEEEeeecCCCeEEEEEc
Q 015490 233 GRVWDLASSAVATPLAKEND-ELFASCRFSPLNNEDYVLYIAAIT-DRGASIVTWNTTTW-KRIRTKQVVREPVSSFNVS 309 (406)
Q Consensus 233 i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~i~~~d~~~~-~~~~~~~~~~~~i~~~~~s 309 (406)
+.|||++..+.+..+..+.. ..+..++|+|+... .+ ++++. +..-.|.+||+|.- .+++.+++|...|.++.|+
T Consensus 186 ~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT--ql-~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc 262 (1049)
T KOG0307|consen 186 AVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT--QL-LVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWC 262 (1049)
T ss_pred ceeccccCCCcccccccCCCccceeeeeeCCCCce--ee-eeecCCCCCceeEeecccccCCchhhhcccccceeeeccC
Confidence 99999999888777765444 34778999999875 23 33333 33468999998753 4678888999999999999
Q ss_pred CCC-CEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCC-eEEEEECCCcEEEEEecCCc
Q 015490 310 ADG-KLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSR-ALVSASMDSSVRVTVIEDKK 376 (406)
Q Consensus 310 p~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~s~dg~i~iw~~~~~~ 376 (406)
+.+ ++|++++.|+.|.+|+.++++.+..+. ....++..+.|+|... .++.++.||.|.|+.+....
T Consensus 263 ~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p-~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 263 PQDPRLLLSSGKDNRIICWNPNTGEVLGELP-AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCchhhhcccCCCCeeEecCCCceEeeecC-CCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 955 899999999999999999999999997 5778899999999655 78888999999999997655
No 135
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=1.1e-21 Score=176.78 Aligned_cols=258 Identities=21% Similarity=0.258 Sum_probs=195.3
Q ss_pred EecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCEEEEee
Q 015490 109 LRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGS 186 (406)
Q Consensus 109 ~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~ 186 (406)
+.||++.|+++.|+|.+..|++++ |.++.+|.-+..++--..... +....+. .....+-|+|++..+++-+
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vR-------lGe~gg~a~GF~g~lw~~n~~~ii~~g 335 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVR-------LGEVGGSAGGFWGGLWSPNSNVIIAHG 335 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEE-------eecccccccceeeEEEcCCCCEEEEec
Confidence 349999999999999997666665 999999876665443332222 2222233 4578899999999999999
Q ss_pred CCCeEEEEeCCCc---ceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCC----------------------
Q 015490 187 ENGNLRVFKWPSL---EIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASS---------------------- 241 (406)
Q Consensus 187 ~dg~i~vwd~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~---------------------- 241 (406)
..|-.++|...+. .....+.+|.+.|++++|+|.|.+|++.+.|.+-|+|-.-..
T Consensus 336 ~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~ 415 (764)
T KOG1063|consen 336 RTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSF 415 (764)
T ss_pred ccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeeh
Confidence 9999999983221 233456678889999999999999999999988877632100
Q ss_pred -------------eeeeecc------------------------------------------------------------
Q 015490 242 -------------AVATPLA------------------------------------------------------------ 248 (406)
Q Consensus 242 -------------~~~~~~~------------------------------------------------------------ 248 (406)
+..+.+.
T Consensus 416 vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~ 495 (764)
T KOG1063|consen 416 VNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAA 495 (764)
T ss_pred ccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccccc
Confidence 0000000
Q ss_pred --------------------------cCCcceEEEEEEEcCCCCceEEEEEEEcCC-----CcEEEEEeCCCceEEEEee
Q 015490 249 --------------------------KENDELFASCRFSPLNNEDYVLYIAAITDR-----GASIVTWNTTTWKRIRTKQ 297 (406)
Q Consensus 249 --------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~i~~~d~~~~~~~~~~~ 297 (406)
..|+..+.+++.+|+++ +++++.. ...|++|+..++..+..+.
T Consensus 496 ~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn------liASaCKS~~~ehAvI~lw~t~~W~~~~~L~ 569 (764)
T KOG1063|consen 496 APCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN------LIASACKSSLKEHAVIRLWNTANWLQVQELE 569 (764)
T ss_pred CchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC------EEeehhhhCCccceEEEEEeccchhhhheec
Confidence 01455677888888887 3344332 4579999999999999999
Q ss_pred ecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceE----EEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490 298 VVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQV----RTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIE 373 (406)
Q Consensus 298 ~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~ 373 (406)
.|.-.|+.++|||||++|++.+.|+++.+|....... .... ..|..-|+++.|+|++.+++|+|.|.+|++|...
T Consensus 570 ~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~-k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 570 GHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACL-KAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEP 648 (764)
T ss_pred ccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccc-cccceEEEEcccCcccceeEEecCCceEEEEecc
Confidence 9999999999999999999999999999998754321 1123 4799999999999999999999999999999998
Q ss_pred CC--cCCCC
Q 015490 374 DK--KKSGG 380 (406)
Q Consensus 374 ~~--~~~~~ 380 (406)
.. +.+..
T Consensus 649 ~~~d~~i~~ 657 (764)
T KOG1063|consen 649 DLRDKYISR 657 (764)
T ss_pred Cchhhhhhh
Confidence 88 55444
No 136
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=6e-22 Score=161.38 Aligned_cols=217 Identities=16% Similarity=0.174 Sum_probs=169.1
Q ss_pred EEecCCCCceEEEEcc-CCCeEEEEe-cCCeEEEEEecccccceeecceeccceeee----cccccCcEEEEEECC-CCC
Q 015490 108 ELRTDSDLPYRMAIHP-HGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLS----QLENVGQQLALTFDS-EGT 180 (406)
Q Consensus 108 ~~~~h~~~v~~~~~sp-~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~-~g~ 180 (406)
..+.|.+.|.++.+.+ .|+++++|+ |+.+.+|++...+..+..-+.. ..+++. .-.|...|..+.|-| |..
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~--k~~c~v~~~h~~~Hky~iss~~WyP~DtG 115 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIA--KHKCIVAKQHENGHKYAISSAIWYPIDTG 115 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcccee--heeeeccccCCccceeeeeeeEEeeecCc
Confidence 4457889999999987 467888887 9999999887665433332222 111211 112336788999988 667
Q ss_pred EEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccC---CCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEE
Q 015490 181 IFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPD---GKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFAS 257 (406)
Q Consensus 181 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 257 (406)
.|.+++.|.+++|||.++.+....+. ..+.|++-+|||= ..++|+|..+-.|++.|+.+|...+.+.+|.+ .|.+
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~-~vla 193 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD-GVLA 193 (397)
T ss_pred eeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC-ceEE
Confidence 88899999999999999988776553 4557888889884 34788888999999999999999999998755 5779
Q ss_pred EEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc-eEEEEe--------------eecCCCeEEEEEcCCCCEEEEEeCCC
Q 015490 258 CRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW-KRIRTK--------------QVVREPVSSFNVSADGKLLAVGTASG 322 (406)
Q Consensus 258 ~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~-~~~~~~--------------~~~~~~i~~~~~sp~~~~l~~~~~dg 322 (406)
+.|+|.... ++++++.||.|++||++.- .+...+ ..|.+.+..++|+.++.++++.+.|.
T Consensus 194 V~Wsp~~e~-----vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~ 268 (397)
T KOG4283|consen 194 VEWSPSSEW-----VLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD 268 (397)
T ss_pred EEeccCcee-----EEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc
Confidence 999999884 8899999999999999853 233333 23456789999999999999999999
Q ss_pred cEEEEECCCce
Q 015490 323 DISIIDSSSLQ 333 (406)
Q Consensus 323 ~i~i~d~~~~~ 333 (406)
.+++|+..+|+
T Consensus 269 r~r~wn~~~G~ 279 (397)
T KOG4283|consen 269 RIRVWNMESGR 279 (397)
T ss_pred ceEEeecccCc
Confidence 99999987654
No 137
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=4.7e-24 Score=192.74 Aligned_cols=207 Identities=19% Similarity=0.266 Sum_probs=186.4
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee
Q 015490 166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT 245 (406)
Q Consensus 166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~ 245 (406)
|...+.|+..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.++.|+++..+|++|+.+|+|++||+..++.++
T Consensus 27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vr 106 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVR 106 (825)
T ss_pred hhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhh
Confidence 44667777776678899999999999999998877777889999999999999999999999999999999999999999
Q ss_pred ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 015490 246 PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDIS 325 (406)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~ 325 (406)
.+.++.. .+.++.|+|.+.+ .+.++.|..+.+||.+...+.+.+..|...+..+.|+|+|++++.|++|..++
T Consensus 107 tLtgh~~-~~~sv~f~P~~~~------~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvk 179 (825)
T KOG0267|consen 107 TLTGHLL-NITSVDFHPYGEF------FASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVK 179 (825)
T ss_pred hhhcccc-CcceeeeccceEE------eccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceee
Confidence 8887655 4668999999873 48889999999999998889999999999999999999999999999999999
Q ss_pred EEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCC
Q 015490 326 IIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGG 380 (406)
Q Consensus 326 i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~ 380 (406)
|||+..++....+. .|.+.+..+.|+|..-++++||.|++|++||+++.+.+..
T Consensus 180 i~d~~agk~~~ef~-~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s 233 (825)
T KOG0267|consen 180 IWDLTAGKLSKEFK-SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISS 233 (825)
T ss_pred eecccccccccccc-cccccccccccCchhhhhccCCCCceeeeeccceeEEeec
Confidence 99999999999996 8999999999999999999999999999999997665543
No 138
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=2e-20 Score=163.01 Aligned_cols=262 Identities=17% Similarity=0.273 Sum_probs=189.2
Q ss_pred cCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeec
Q 015490 85 IRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQ 163 (406)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (406)
.+..+.++.|+.+. .....+..++.|....|+|.+..+++.. .+.+..|.+.. +...++..+ +..
T Consensus 178 ~~h~lSVWdWqk~~------~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~--~~l~k~~~~------fek 243 (626)
T KOG2106|consen 178 NPHMLSVWDWQKKA------KLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRG--GSLVKRQGI------FEK 243 (626)
T ss_pred Cccccchhhchhhh------ccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccC--CceEEEeec------ccc
Confidence 34445555555543 4445556678899999999888776654 66666665443 333222111 111
Q ss_pred ccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCee
Q 015490 164 LENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAV 243 (406)
Q Consensus 164 ~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~ 243 (406)
.....|.|++|.++|. +++|..+|.|.||+..+.+.......|.+.|.+++...+|. |++|+.|..|..||-. -+.
T Consensus 244 -~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~-y~k 319 (626)
T KOG2106|consen 244 -REKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDN-YRK 319 (626)
T ss_pred -ccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEecccc-ccc
Confidence 1126799999999997 56999999999999988887777778888999999999997 5559999999999831 111
Q ss_pred eeecc----------------------------------------cCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEE
Q 015490 244 ATPLA----------------------------------------KENDELFASCRFSPLNNEDYVLYIAAITDRGASIV 283 (406)
Q Consensus 244 ~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~ 283 (406)
.+..+ ..+......++.+|+... +++++.|+.++
T Consensus 320 ~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q------~~T~gqdk~v~ 393 (626)
T KOG2106|consen 320 LRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQ------LLTCGQDKHVR 393 (626)
T ss_pred cccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhh------eeeccCcceEE
Confidence 11100 012223445666666663 56678999999
Q ss_pred EEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEEC
Q 015490 284 TWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASM 363 (406)
Q Consensus 284 ~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~ 363 (406)
+|+ ..++..+.. -..+..|+.|+|.| .+|.|+..|...+.|.++...+..-. .+.+++.+.|+|+|.+||.|+.
T Consensus 394 lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~--d~~~ls~v~ysp~G~~lAvgs~ 467 (626)
T KOG2106|consen 394 LWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT--DNEQLSVVRYSPDGAFLAVGSH 467 (626)
T ss_pred Ecc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe--cCCceEEEEEcCCCCEEEEecC
Confidence 999 334444433 34678999999999 99999999999999999865555443 3889999999999999999999
Q ss_pred CCcEEEEEecCCc
Q 015490 364 DSSVRVTVIEDKK 376 (406)
Q Consensus 364 dg~i~iw~~~~~~ 376 (406)
|+.|+||.+....
T Consensus 468 d~~iyiy~Vs~~g 480 (626)
T KOG2106|consen 468 DNHIYIYRVSANG 480 (626)
T ss_pred CCeEEEEEECCCC
Confidence 9999999997654
No 139
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.3e-20 Score=169.51 Aligned_cols=246 Identities=17% Similarity=0.198 Sum_probs=192.3
Q ss_pred eEEecC-CCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEe
Q 015490 107 AELRTD-SDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAG 185 (406)
Q Consensus 107 ~~~~~h-~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 185 (406)
..+.++ ...|.+++|++.++++-++.++.+.-|+ ..+.+....++. ..+.|.+++.+|.+..++.|
T Consensus 62 ~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwD--l~~lk~~~~~d~-----------~gg~IWsiai~p~~~~l~Ig 128 (691)
T KOG2048|consen 62 PVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWD--LHTLKQKYNIDS-----------NGGAIWSIAINPENTILAIG 128 (691)
T ss_pred EEEecCCCCceeeEEEccCCeEEeecCCceEEEEe--cccCceeEEecC-----------CCcceeEEEeCCccceEEee
Confidence 344444 5789999999766655555577666554 443333322211 34789999999999999999
Q ss_pred eCCCeEEEEeCCCcceEee--eeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeec-------ccCCcceEE
Q 015490 186 SENGNLRVFKWPSLEIILN--ESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPL-------AKENDELFA 256 (406)
Q Consensus 186 ~~dg~i~vwd~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-------~~~~~~~~~ 256 (406)
+.||.+..++...++.... +....+.|.+++|+|++..|+.|+.||.|++||..++...+.. .......+.
T Consensus 129 cddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVW 208 (691)
T KOG2048|consen 129 CDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVW 208 (691)
T ss_pred cCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEE
Confidence 9999888888877765443 3334468999999999999999999999999999998877622 122345678
Q ss_pred EEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceE--
Q 015490 257 SCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQV-- 334 (406)
Q Consensus 257 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~-- 334 (406)
++.|..++. +++++..|.|.+||...+..+..+..|...|.+++..+++.++++++.|+.|.-|...+...
T Consensus 209 Sv~~Lrd~t-------I~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~w 281 (691)
T KOG2048|consen 209 SVLFLRDST-------IASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEW 281 (691)
T ss_pred EEEEeecCc-------EEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccce
Confidence 888887764 68889999999999999999999999999999999999999999999999999998876643
Q ss_pred -EEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490 335 -RTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED 374 (406)
Q Consensus 335 -~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~ 374 (406)
.......|...|.+++..++ .+++|+.|.++.+-..+.
T Consensus 282 v~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 282 VINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred eeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 22222478889999999877 899999999988877655
No 140
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=1e-21 Score=165.03 Aligned_cols=258 Identities=16% Similarity=0.190 Sum_probs=181.5
Q ss_pred eEEecCCCCceEEEEccCCCeEEEEe---cCCeEEEEEecccc--cceeecceeccceeeeccccc-CcEEEEEECCCC-
Q 015490 107 AELRTDSDLPYRMAIHPHGDGIICAL---QNSCRLFEWDEVEN--TEIRRLGVKISEKVLSQLENV-GQQLALTFDSEG- 179 (406)
Q Consensus 107 ~~~~~h~~~v~~~~~sp~~~~l~~~~---~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g- 179 (406)
...-.|.+.+..+.-++-++-.++++ .|.++||++...-. ............+++.++.++ ..=..++|||-.
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~ 224 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT 224 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence 34557888899999888876555554 56666665532210 000000000133445555555 667899999932
Q ss_pred CEEEEeeCCCeEEEEeCCCcceE---eeeeccCCceeEEEEccCC-CEEEEEeCCCCEEEEEcCCCeee-eecccCCcce
Q 015490 180 TIFAAGSENGNLRVFKWPSLEII---LNESEAHASVKDLSFSPDG-KFLVSLGNRGPGRVWDLASSAVA-TPLAKENDEL 254 (406)
Q Consensus 180 ~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~i~~~~~s~~~-~~l~s~s~d~~i~iwd~~~~~~~-~~~~~~~~~~ 254 (406)
..|++|.--+.|++|...++.-. ..+.+|...|-+++|||.. ..|++||.||+|+|||++.+... ..+...+...
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sD 304 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSD 304 (440)
T ss_pred cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCc
Confidence 34778877889999998877543 2456677899999999964 48999999999999999988322 2222345557
Q ss_pred EEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC---ceEEEEeeecCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECC
Q 015490 255 FASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT---WKRIRTKQVVREPVSSFNVSAD-GKLLAVGTASGDISIIDSS 330 (406)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~---~~~~~~~~~~~~~i~~~~~sp~-~~~l~~~~~dg~i~i~d~~ 330 (406)
|..+.|+.... ++++|+.+|++++||+++ ++++..++.|..+|+++.|+|. ...|++++.|.+|.+||+.
T Consensus 305 VNVISWnr~~~------lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 305 VNVISWNRREP------LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred eeeEEccCCcc------eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 88999988765 578999999999999986 4578899999999999999994 5678888899999999985
Q ss_pred CceE----------------EEEeecccc--cceEEEEEcCC-CCeEEEEECCCcEEEEEe
Q 015490 331 SLQV----------------RTAVKKAHL--GIVTALAFSYD-SRALVSASMDSSVRVTVI 372 (406)
Q Consensus 331 ~~~~----------------~~~~~~~~~--~~v~~~~~sp~-~~~l~s~s~dg~i~iw~~ 372 (406)
...- ...+ ..|. ..+..+.|+++ ..+|++.+.|| +.||..
T Consensus 379 vE~D~ee~~~~a~~~L~dlPpQLL-FVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfkt 437 (440)
T KOG0302|consen 379 VEADEEEIDQEAAEGLQDLPPQLL-FVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFKT 437 (440)
T ss_pred ccCChhhhccccccchhcCCceeE-EEecchhHhhhheeccCCCCeEEEecccc-eeEEEe
Confidence 3110 1111 1353 35788999986 35778888888 666653
No 141
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=7.9e-22 Score=177.75 Aligned_cols=242 Identities=17% Similarity=0.219 Sum_probs=195.4
Q ss_pred cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEE-EEECC-CC
Q 015490 104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLA-LTFDS-EG 179 (406)
Q Consensus 104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~-~~~s~-~g 179 (406)
+.-+.+.+|...|..+++.+.. .+++++ |+++++|.-....-.. ...+. +.+.+.+ +++-+ ++
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~------------~~~~~~~~g~i~~~i~y~e~~~ 71 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLE------------THAFEGPKGFIANSICYAESDK 71 (745)
T ss_pred eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCccccc------------ceecccCcceeeccceeccccC
Confidence 4567889999999999987654 566666 8999997643221111 01122 3355555 67765 55
Q ss_pred CEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEE
Q 015490 180 TIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCR 259 (406)
Q Consensus 180 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 259 (406)
-.+++|+.|.+|.+|...+..+...+.+|...|.+++...++. +++||.|.++++|... ++...+.+ |...|.++.
T Consensus 72 ~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~g-H~asVWAv~ 147 (745)
T KOG0301|consen 72 GRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQG-HTASVWAVA 147 (745)
T ss_pred cceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch--hhhcccCC-cchheeeee
Confidence 5699999999999999999999999999999999999888887 9999999999999864 44455655 455688999
Q ss_pred EEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee
Q 015490 260 FSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK 339 (406)
Q Consensus 260 ~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 339 (406)
.-|.+. ..+++.|..|++|.- ++.++++.+|...|+.+++-+++. +++++.||.|++|++ +++.+..+.
T Consensus 148 ~l~e~~-------~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ 216 (745)
T KOG0301|consen 148 SLPENT-------YVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMH 216 (745)
T ss_pred ecCCCc-------EEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeee
Confidence 989885 367788999999987 578899999999999999998764 668889999999999 678888875
Q ss_pred cccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490 340 KAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED 374 (406)
Q Consensus 340 ~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~ 374 (406)
+|...|.++....++..+++++.|++++||+...
T Consensus 217 -ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e 250 (745)
T KOG0301|consen 217 -GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDE 250 (745)
T ss_pred -ccceEEEEEEecCCCCeEEEecCCceEEEeecCc
Confidence 8999999999888888999999999999999873
No 142
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=9e-21 Score=170.61 Aligned_cols=248 Identities=13% Similarity=0.130 Sum_probs=199.2
Q ss_pred ecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCC
Q 015490 110 RTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSEN 188 (406)
Q Consensus 110 ~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 188 (406)
.--...|.+|+|+.+.+.||++- ++.+.||+....-. .+..-.......|.+++|++.+ .|++.+.+
T Consensus 22 d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~-----------~~~vi~g~~drsIE~L~W~e~~-RLFS~g~s 89 (691)
T KOG2048|consen 22 DYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF-----------LEPVIHGPEDRSIESLAWAEGG-RLFSSGLS 89 (691)
T ss_pred eeeccceEEEEEeccCCceeeeccCCcEEEEccCCCce-----------eeEEEecCCCCceeeEEEccCC-eEEeecCC
Confidence 33467899999999999999886 99999998765211 1111111233679999999555 56677889
Q ss_pred CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeeccc-CCcceEEEEEEEcCCCCc
Q 015490 189 GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAK-ENDELFASCRFSPLNNED 267 (406)
Q Consensus 189 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 267 (406)
|.|.-||+.+++....+....+.|++++.+|.+..++.+++||.+..++...++....... .....+-++.|+|++.+
T Consensus 90 g~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~- 168 (691)
T KOG2048|consen 90 GSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK- 168 (691)
T ss_pred ceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccE-
Confidence 9999999999999988888778999999999999999999999888888877766553332 33467889999999975
Q ss_pred eEEEEEEEcCCCcEEEEEeCCCceEEEEeee--------cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee
Q 015490 268 YVLYIAAITDRGASIVTWNTTTWKRIRTKQV--------VREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK 339 (406)
Q Consensus 268 ~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~--------~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 339 (406)
++.|+.||.|++||..++..+..... ...-|+++.|-.++ .|++|...|+|.+||...+..+..+.
T Consensus 169 -----i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~ 242 (691)
T KOG2048|consen 169 -----IAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHS 242 (691)
T ss_pred -----EEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhh
Confidence 67889999999999998877662221 12246677776554 78999999999999999999999886
Q ss_pred cccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490 340 KAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK 377 (406)
Q Consensus 340 ~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~ 377 (406)
.|...|.+++..+++.++++++.|+.|.-+...+++.
T Consensus 243 -~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 243 -CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred -hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence 8999999999999999999999999999999887755
No 143
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=3.3e-21 Score=158.51 Aligned_cols=198 Identities=16% Similarity=0.223 Sum_probs=167.3
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCC--EEEEEeCCCCEEEEEcCCCee
Q 015490 166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGK--FLVSLGNRGPGRVWDLASSAV 243 (406)
Q Consensus 166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~s~s~d~~i~iwd~~~~~~ 243 (406)
|.+.+++++. ++.++|+|+.|.+|+|||+++......+..|.+.|+++.|.+.-. .|++|+.||.|.+|+...-..
T Consensus 42 H~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~ 119 (362)
T KOG0294|consen 42 HAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWEL 119 (362)
T ss_pred cccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEE
Confidence 4488999998 578999999999999999999999999999999999999998765 899999999999999999999
Q ss_pred eeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCc
Q 015490 244 ATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGD 323 (406)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~ 323 (406)
+..+..|... |+.++.+|.++ ++.+.+.|+.+++||+-+++.-..+.... ..+.+.|+|.|.+++.+..+ .
T Consensus 120 ~~slK~H~~~-Vt~lsiHPS~K------LALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~at~v~w~~~Gd~F~v~~~~-~ 190 (362)
T KOG0294|consen 120 LKSLKAHKGQ-VTDLSIHPSGK------LALSVGGDQVLRTWNLVRGRVAFVLNLKN-KATLVSWSPQGDHFVVSGRN-K 190 (362)
T ss_pred eeeecccccc-cceeEecCCCc------eEEEEcCCceeeeehhhcCccceeeccCC-cceeeEEcCCCCEEEEEecc-E
Confidence 9999887665 99999999998 45666789999999999988766665543 34569999999999888765 4
Q ss_pred EEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490 324 ISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK 377 (406)
Q Consensus 324 i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~ 377 (406)
|-+|.+.+......+. ....+.++.|. ++..|++|+.|+.|++||.++...
T Consensus 191 i~i~q~d~A~v~~~i~--~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~ 241 (362)
T KOG0294|consen 191 IDIYQLDNASVFREIE--NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTP 241 (362)
T ss_pred EEEEecccHhHhhhhh--ccccceeeeec-CCceEEEecCCceEEEeccCCCcc
Confidence 9999998877766664 33456677776 467899999999999999987544
No 144
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=7.3e-22 Score=169.87 Aligned_cols=263 Identities=14% Similarity=0.135 Sum_probs=195.8
Q ss_pred cceeEEecCCCCceEEEEccCCC-eEEEEe--cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCC-
Q 015490 104 QPVAELRTDSDLPYRMAIHPHGD-GIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEG- 179 (406)
Q Consensus 104 ~~~~~~~~h~~~v~~~~~sp~~~-~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g- 179 (406)
......+-+.+.|++++|+|... .+++++ .|.+-+|+++.+... .........|..+|.++.|+|..
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d---------~d~v~~f~~hs~~Vs~l~F~P~n~ 247 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD---------KDGVYLFTPHSGPVSGLKFSPANT 247 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc---------cCceEEeccCCccccceEecCCCh
Confidence 34556777899999999999876 555555 666777776522111 12222333456889999999954
Q ss_pred CEEEEeeCCCeEEEEeCCCcceEeeeec--cCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEE
Q 015490 180 TIFAAGSENGNLRVFKWPSLEIILNESE--AHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFAS 257 (406)
Q Consensus 180 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 257 (406)
..+++.+.||+|++-|++++..-..+.. ....+.++.|+.+...++.+..=|.+.+||.+++........-+...|..
T Consensus 248 s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~s 327 (498)
T KOG4328|consen 248 SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITS 327 (498)
T ss_pred hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccce
Confidence 7888999999999999987654332322 33477889999988888888888899999999877643333334447999
Q ss_pred EEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceE----EEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC----
Q 015490 258 CRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR----IRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDS---- 329 (406)
Q Consensus 258 ~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~----~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~---- 329 (406)
++++|...+ ++++++.|+++++||++.... ......|...|.+..|||.+..|++.+.|..|+|||.
T Consensus 328 v~~NP~~p~-----~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~s 402 (498)
T KOG4328|consen 328 VALNPVCPW-----FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCIS 402 (498)
T ss_pred eecCCCCch-----heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccc
Confidence 999999986 778889999999999986432 2334467889999999998888999999999999998
Q ss_pred CCceEEEEeeccc--ccc--eEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCC
Q 015490 330 SSLQVRTAVKKAH--LGI--VTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGG 380 (406)
Q Consensus 330 ~~~~~~~~~~~~~--~~~--v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~ 380 (406)
....+...+...+ ..+ .....|.|+..++++|-.-..|-|+|-..++.+.+
T Consensus 403 a~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~e 457 (498)
T KOG4328|consen 403 AKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCE 457 (498)
T ss_pred ccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeee
Confidence 3445555554211 122 34678999999999999999999999888875544
No 145
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.1e-21 Score=161.19 Aligned_cols=199 Identities=17% Similarity=0.296 Sum_probs=157.9
Q ss_pred EEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeeccc
Q 015490 170 QLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAK 249 (406)
Q Consensus 170 v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 249 (406)
..|+.|++.|.+||+|+.||.|.|||+.+......+..|..+|++++||+||+.|+++|.|..|.+||+..|.+++.+..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence 78999999999999999999999999999988777888888999999999999999999999999999999999888864
Q ss_pred CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeec--CCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 015490 250 ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVV--REPVSSFNVSADGKLLAVGTASGDISII 327 (406)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~i~~~~~sp~~~~l~~~~~dg~i~i~ 327 (406)
..++..+.|+|...+ .+++..-.....+..++-...+.+..-... .....+..|++.|++|++|...|.+.++
T Consensus 106 --~spv~~~q~hp~k~n---~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~ 180 (405)
T KOG1273|consen 106 --DSPVWGAQWHPRKRN---KCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVY 180 (405)
T ss_pred --cCccceeeeccccCC---eEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEE
Confidence 457889999998876 222222233333333332221111111100 1122334688999999999999999999
Q ss_pred ECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490 328 DSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIE 373 (406)
Q Consensus 328 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~ 373 (406)
|..+.+++..+.......|.++.++..|++|+.-+.|..||.|+++
T Consensus 181 ~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 181 DAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred ecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 9999999888863334789999999999999999999999999987
No 146
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=3.2e-21 Score=172.35 Aligned_cols=255 Identities=15% Similarity=0.135 Sum_probs=176.8
Q ss_pred cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCC-CE
Q 015490 104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEG-TI 181 (406)
Q Consensus 104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~ 181 (406)
+.+.....|.+.|..+.|.|....|++++ |.++++|++........ -..+.|.+.|.+++|.|+. ..
T Consensus 91 ~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~-----------~~~~GH~~SvkS~cf~~~n~~v 159 (720)
T KOG0321|consen 91 RQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGG-----------RLNLGHTGSVKSECFMPTNPAV 159 (720)
T ss_pred hhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecc-----------eeecccccccchhhhccCCCcc
Confidence 34566778999999999999545555553 88888877664321111 0235577899999999955 78
Q ss_pred EEEeeCCCeEEEEeCCCcc---------------------------eEeeeeccCCceeE---EEEccCCCEEEEEeC-C
Q 015490 182 FAAGSENGNLRVFKWPSLE---------------------------IILNESEAHASVKD---LSFSPDGKFLVSLGN-R 230 (406)
Q Consensus 182 l~~~~~dg~i~vwd~~~~~---------------------------~~~~~~~~~~~i~~---~~~s~~~~~l~s~s~-d 230 (406)
|++|+.||.|.|||++-.. .+.....+...|.+ +.+..|...||+++. |
T Consensus 160 F~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D 239 (720)
T KOG0321|consen 160 FCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAAD 239 (720)
T ss_pred eeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCC
Confidence 9999999999999984211 00111122234555 556678889999987 9
Q ss_pred CCEEEEEcCCCeeeeecc--------cCC--cceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce--EEEEeee
Q 015490 231 GPGRVWDLASSAVATPLA--------KEN--DELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK--RIRTKQV 298 (406)
Q Consensus 231 ~~i~iwd~~~~~~~~~~~--------~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~--~~~~~~~ 298 (406)
+.|+|||++......... .+. ...+.++.....|.+ +++++. |+.|++|++.+.. ++..+.+
T Consensus 240 ~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~-----L~AsCt-D~sIy~ynm~s~s~sP~~~~sg 313 (720)
T KOG0321|consen 240 STIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTY-----LFASCT-DNSIYFYNMRSLSISPVAEFSG 313 (720)
T ss_pred cceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCe-----EEEEec-CCcEEEEeccccCcCchhhccC
Confidence 999999998765433221 111 223455666666664 445544 9999999998643 2333333
Q ss_pred cCC--CeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCC-CeEEEEECCCcEEEEEecCC
Q 015490 299 VRE--PVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDS-RALVSASMDSSVRVTVIEDK 375 (406)
Q Consensus 299 ~~~--~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~s~dg~i~iw~~~~~ 375 (406)
+.. .-..-..+||+.++++|+.|...++|.+.+.+....+..+|...|++++|.|.. .-+++++.|.+++||++.++
T Consensus 314 ~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 314 KLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred cccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 211 112234689999999999999999999998776655556999999999998842 34778899999999999654
No 147
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=1.2e-19 Score=161.75 Aligned_cols=236 Identities=19% Similarity=0.201 Sum_probs=164.7
Q ss_pred EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeeccccc
Q 015490 90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV 167 (406)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (406)
.+..|+..... ....+..+.. +..++|+|+++.+++++ ++.+.+ |+..+... +..+...
T Consensus 54 ~v~~~d~~~~~----~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~--~d~~~~~~------------~~~~~~~ 114 (300)
T TIGR03866 54 TIQVIDLATGE----VIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTV--IDIETRKV------------LAEIPVG 114 (300)
T ss_pred eEEEEECCCCc----EEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEE--EECCCCeE------------EeEeeCC
Confidence 35556655422 3334444433 57889999999887664 455555 45443222 2222333
Q ss_pred CcEEEEEECCCCCEEEEeeCCC-eEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEe-CCCCEEEEEcCCCeeee
Q 015490 168 GQQLALTFDSEGTIFAAGSENG-NLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLG-NRGPGRVWDLASSAVAT 245 (406)
Q Consensus 168 ~~v~~~~~s~~g~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s-~d~~i~iwd~~~~~~~~ 245 (406)
..+.+++|+|+|+++++++.++ .+.+||.++++....... ...+.+++|+|++++|++++ .++.|++||+++++...
T Consensus 115 ~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~ 193 (300)
T TIGR03866 115 VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIK 193 (300)
T ss_pred CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeee
Confidence 4467899999999999888765 577889988776654432 23457899999999886554 68999999999988766
Q ss_pred ecccCC------cceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEe
Q 015490 246 PLAKEN------DELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGT 319 (406)
Q Consensus 246 ~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 319 (406)
.+.... ......++|+|+++. +.+....++.+.+||.++++....+. +...+.+++|+|+|++|+++.
T Consensus 194 ~~~~~~~~~~~~~~~~~~i~~s~dg~~-----~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~ 267 (300)
T TIGR03866 194 KITFEIPGVHPEAVQPVGIKLTKDGKT-----AFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTN 267 (300)
T ss_pred eeeecccccccccCCccceEECCCCCE-----EEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEc
Confidence 553211 112346889999984 23333456789999999888776554 345688999999999998864
Q ss_pred -CCCcEEEEECCCceEEEEeecccccceEEEEEcC
Q 015490 320 -ASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSY 353 (406)
Q Consensus 320 -~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp 353 (406)
.++.|.+||+.+++.+..+. .....+.++++|
T Consensus 268 ~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~ 300 (300)
T TIGR03866 268 GVSNDVSVIDVAALKVIKSIK--VGRLPWGVVVRP 300 (300)
T ss_pred CCCCeEEEEECCCCcEEEEEE--cccccceeEeCC
Confidence 58999999999999999886 345568888875
No 148
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=1.7e-21 Score=163.74 Aligned_cols=205 Identities=18% Similarity=0.246 Sum_probs=163.3
Q ss_pred cccccCcEEEEEECCCC--CEEEEeeCCCeEEEEeCCC----------------cceEeeeeccCCceeEEEEccCC-CE
Q 015490 163 QLENVGQQLALTFDSEG--TIFAAGSENGNLRVFKWPS----------------LEIILNESEAHASVKDLSFSPDG-KF 223 (406)
Q Consensus 163 ~~~~~~~v~~~~~s~~g--~~l~~~~~dg~i~vwd~~~----------------~~~~~~~~~~~~~i~~~~~s~~~-~~ 223 (406)
...+.+.++.+.-++-+ .+.++=+..|.|+||++.. .+.+.++.+|...=+.++|||-. ..
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 34456677777776654 5666668899999999832 23556677777777899999932 24
Q ss_pred EEEEeCCCCEEEEEcCCCeeee---ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc---eEEEEee
Q 015490 224 LVSLGNRGPGRVWDLASSAVAT---PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW---KRIRTKQ 297 (406)
Q Consensus 224 l~s~s~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~---~~~~~~~ 297 (406)
|++|..-+.|++|...++.-.. .+.. |...|..++|+|.... ++++++-|+.|++||++.+ .++.+ +
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~g-H~~SVEDLqWSptE~~-----vfaScS~DgsIrIWDiRs~~~~~~~~~-k 299 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTG-HTKSVEDLQWSPTEDG-----VFASCSCDGSIRIWDIRSGPKKAAVST-K 299 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccc-cccchhhhccCCccCc-----eEEeeecCceEEEEEecCCCccceeEe-e
Confidence 7888888899999998865432 3344 5667889999999987 7788899999999999987 33433 7
Q ss_pred ecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---ceEEEEeecccccceEEEEEcCC-CCeEEEEECCCcEEEEEec
Q 015490 298 VVREPVSSFNVSADGKLLAVGTASGDISIIDSSS---LQVRTAVKKAHLGIVTALAFSYD-SRALVSASMDSSVRVTVIE 373 (406)
Q Consensus 298 ~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~v~~~~~sp~-~~~l~s~s~dg~i~iw~~~ 373 (406)
.|.+.|..++|+.+..+||+|+.||+++|||+++ ++++..++ .|..+|+++.|+|. ...|++++.|.+|.+||+.
T Consensus 300 Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk-~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 300 AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK-YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred ccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEE-eccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 7889999999999888999999999999999985 56778886 79999999999995 5678888999999999996
Q ss_pred CC
Q 015490 374 DK 375 (406)
Q Consensus 374 ~~ 375 (406)
-.
T Consensus 379 vE 380 (440)
T KOG0302|consen 379 VE 380 (440)
T ss_pred cc
Confidence 43
No 149
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=5.8e-21 Score=157.05 Aligned_cols=240 Identities=12% Similarity=0.131 Sum_probs=183.0
Q ss_pred ceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCEEEEeeCCCeEEE
Q 015490 116 PYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGSENGNLRV 193 (406)
Q Consensus 116 v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i~v 193 (406)
..|+.|++-|.+|++|+ +|.+.||+++... ..+.+..| .+|.+++||+||+.|++++.|..|.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~--------------iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~l 91 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR--------------IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKL 91 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc--------------hhhhhhccccceeEEEecCCCCEeeeecCCceeEE
Confidence 78999999999999998 9999998887532 23334444 88999999999999999999999999
Q ss_pred EeCCCcceEeeeeccCCce-----------------------------------------------eEEEEccCCCEEEE
Q 015490 194 FKWPSLEIILNESEAHASV-----------------------------------------------KDLSFSPDGKFLVS 226 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~i-----------------------------------------------~~~~~s~~~~~l~s 226 (406)
||+..|.++..+.- .++| .+..|.+.|+++++
T Consensus 92 wDl~~gs~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIit 170 (405)
T KOG1273|consen 92 WDLLKGSPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIIT 170 (405)
T ss_pred EeccCCCceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEE
Confidence 99987765433211 0011 12235566889999
Q ss_pred EeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEE---------EEee
Q 015490 227 LGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRI---------RTKQ 297 (406)
Q Consensus 227 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~---------~~~~ 297 (406)
|...|.+.++|..+.+++..++......+..+.++..++. ++....|+.|+.|+++.-... ..++
T Consensus 171 GtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~------liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~q 244 (405)
T KOG1273|consen 171 GTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRF------LIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQ 244 (405)
T ss_pred ecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcE------EEEecCCceEEEEehhhhcccCccCCcChhHHHH
Confidence 9999999999999999988777655566888999999983 455577999999998631110 0110
Q ss_pred --ecCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCceEEEEeecccc-cceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490 298 --VVREPVSSFNVSADGKLLAVGTA-SGDISIIDSSSLQVRTAVKKAHL-GIVTALAFSYDSRALVSASMDSSVRVTVIE 373 (406)
Q Consensus 298 --~~~~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~ 373 (406)
..+..-.+++||.+|.|++.++. -..++||....|..++.+. |.. .....+.|+|-...+++. ..|.|+||...
T Consensus 245 DvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh-G~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 245 DVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILH-GTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred HHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeec-CCchhheeecccccceeeeeec-cCCceEEEEee
Confidence 01234568999999999988875 4679999999999999986 555 557789999988888877 67899999987
Q ss_pred CCcCC
Q 015490 374 DKKKS 378 (406)
Q Consensus 374 ~~~~~ 378 (406)
..+..
T Consensus 323 ~~enw 327 (405)
T KOG1273|consen 323 QVENW 327 (405)
T ss_pred cccch
Confidence 76653
No 150
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=4e-22 Score=158.26 Aligned_cols=203 Identities=15% Similarity=0.183 Sum_probs=164.8
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc---eEeeeeccCCceeEEEEcc--CCCEEEEEeCCCCEEEEEcCC
Q 015490 166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLE---IILNESEAHASVKDLSFSP--DGKFLVSLGNRGPGRVWDLAS 240 (406)
Q Consensus 166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~i~~~~~s~--~~~~l~s~s~d~~i~iwd~~~ 240 (406)
|.+.|..+...--|+.||+++.|++|+|+.+++.. .+..+.+|.++|..++|.. .|.+|++++.||.|.||.-.+
T Consensus 10 H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~ 89 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEEN 89 (299)
T ss_pred hhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCC
Confidence 44667777777789999999999999999997543 5677889999999999965 799999999999999999988
Q ss_pred Ceeeeecc-cCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc---eEEEEeeecCCCeEEEEEcCC---C-
Q 015490 241 SAVATPLA-KENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW---KRIRTKQVVREPVSSFNVSAD---G- 312 (406)
Q Consensus 241 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~i~~~~~sp~---~- 312 (406)
++-.+... ..+...+++++|.|.+-. ++++.++.||.|.+.+.+.. ...+....|.-.+++++|.|- |
T Consensus 90 g~w~k~~e~~~h~~SVNsV~wapheyg----l~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 90 GRWTKAYEHAAHSASVNSVAWAPHEYG----LLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred Cchhhhhhhhhhcccceeecccccccc----eEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence 85433222 235567899999998865 56677788999999887653 233445678888999999995 4
Q ss_pred ----------CEEEEEeCCCcEEEEECCCce--EEEEeecccccceEEEEEcCCC----CeEEEEECCCcEEEEEec
Q 015490 313 ----------KLLAVGTASGDISIIDSSSLQ--VRTAVKKAHLGIVTALAFSYDS----RALVSASMDSSVRVTVIE 373 (406)
Q Consensus 313 ----------~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~sp~~----~~l~s~s~dg~i~iw~~~ 373 (406)
+.|++|+.|..|+||+..+++ ...++ .+|.+.|+.++|.|.- .+|+++|.||+|.||..+
T Consensus 166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l-~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTL-EGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred ccccCcccccceeeccCCccceeeeecCCcchhhhhhh-hhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence 569999999999999988753 33445 4899999999999963 579999999999999887
No 151
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=3.3e-20 Score=159.80 Aligned_cols=266 Identities=15% Similarity=0.168 Sum_probs=189.4
Q ss_pred EEEEEecCCCCccccceeEEecCCCCceEEEEccCCC-eEEE-EecCCeEEEEEecccccceeecceeccceeeeccccc
Q 015490 90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGD-GIIC-ALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV 167 (406)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (406)
.+..|+...+.-....+..+..|..+|.+|.|+|... .+++ +.||++++-+++....+++... -...
T Consensus 211 ~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~-----------~~d~ 279 (498)
T KOG4328|consen 211 QVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSL-----------DTDN 279 (498)
T ss_pred cEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhc-----------Cccc
Confidence 4555555433333456778899999999999999764 3444 4499999988775533322221 1123
Q ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcce-EeeeeccCCceeEEEEccCCC-EEEEEeCCCCEEEEEcCCCeeee
Q 015490 168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEI-ILNESEAHASVKDLSFSPDGK-FLVSLGNRGPGRVWDLASSAVAT 245 (406)
Q Consensus 168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~~~~~ 245 (406)
..+..+.|+.+...++.+..=|...+||.+++.. ...+.-|...|.+++++|-.. +|++++.|++++|||++......
T Consensus 280 ~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~ 359 (498)
T KOG4328|consen 280 IWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA 359 (498)
T ss_pred eeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCC
Confidence 4567788988887788887778999999988765 555566777999999999654 78999999999999998754333
Q ss_pred e---cccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC----CceEEEEeeecC------CCeEEEEEcCCC
Q 015490 246 P---LAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT----TWKRIRTKQVVR------EPVSSFNVSADG 312 (406)
Q Consensus 246 ~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~----~~~~~~~~~~~~------~~i~~~~~sp~~ 312 (406)
. ....|...|.+..|+|.+.. +++.+.|..|++||.. ...+..++. |. -......|.|+.
T Consensus 360 sp~lst~~HrrsV~sAyFSPs~gt------l~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~ 432 (498)
T KOG4328|consen 360 SPFLSTLPHRRSVNSAYFSPSGGT------LLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDY 432 (498)
T ss_pred CcceecccccceeeeeEEcCCCCc------eEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCc
Confidence 2 22346677999999999985 4566789999999984 223333332 21 123457899999
Q ss_pred CEEEEEeCCCcEEEEECCCceEEEEeecccccceE-EEEEcCCCCeEEEEE-CCCcEEEEEec
Q 015490 313 KLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVT-ALAFSYDSRALVSAS-MDSSVRVTVIE 373 (406)
Q Consensus 313 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~s~s-~dg~i~iw~~~ 373 (406)
.++++|..-..|-|+|-..++.+..+.......|. -..|+|-+..+++|+ ..|.|+||--+
T Consensus 433 ~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 433 NLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 99999999889999999988888876422333444 347999877555554 56788888644
No 152
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.4e-22 Score=190.77 Aligned_cols=253 Identities=19% Similarity=0.225 Sum_probs=193.1
Q ss_pred eEEEEccCCC-eEEEEe-----------cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCE---
Q 015490 117 YRMAIHPHGD-GIICAL-----------QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTI--- 181 (406)
Q Consensus 117 ~~~~~sp~~~-~l~~~~-----------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~--- 181 (406)
-.++|+|++. ++++|. +.++.||.++..+... ..+....+......+.++|.+.|..
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~--------dlk~~~s~~s~~rF~kL~W~~~g~~~~G 81 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESS--------DLKPVGSLQSSNRFNKLAWGSYGSHSHG 81 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccc--------cccccccccccccceeeeecccCCCccc
Confidence 3568888886 444331 3455666666543321 1133444555677889999987754
Q ss_pred -EEEeeCCCeEEEEeCCCc------ceEeeeeccCCceeEEEEccCCC-EEEEEeCCCCEEEEEcCCCeeeeeccc-CCc
Q 015490 182 -FAAGSENGNLRVFKWPSL------EIILNESEAHASVKDLSFSPDGK-FLVSLGNRGPGRVWDLASSAVATPLAK-END 252 (406)
Q Consensus 182 -l~~~~~dg~i~vwd~~~~------~~~~~~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~-~~~ 252 (406)
||.|.+||.|.+||...- ..+.....|++.|..+.|++... .||+|+.||.|.|||+...+....... ...
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~ 161 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPP 161 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCc
Confidence 899999999999997542 23455677888999999999765 999999999999999987655544422 234
Q ss_pred ceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC--CCeEEEEEcCCC-CEEEEEeCCC---cEEE
Q 015490 253 ELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR--EPVSSFNVSADG-KLLAVGTASG---DISI 326 (406)
Q Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~i~~~~~sp~~-~~l~~~~~dg---~i~i 326 (406)
..|.+++|+..-.+ ++++++.++.+.+||++..+++..+..+. ..+..+.|+|++ ..|++++.|. .|.+
T Consensus 162 ~eI~~lsWNrkvqh-----ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pviql 236 (1049)
T KOG0307|consen 162 SEIKCLSWNRKVSH-----ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQL 236 (1049)
T ss_pred ccceEeccchhhhH-----HhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEe
Confidence 56889999998887 78899999999999999988877776654 347899999976 3566666543 5999
Q ss_pred EECCCce-EEEEeecccccceEEEEEcCCC-CeEEEEECCCcEEEEEecCCcCCCCchH
Q 015490 327 IDSSSLQ-VRTAVKKAHLGIVTALAFSYDS-RALVSASMDSSVRVTVIEDKKKSGGLNL 383 (406)
Q Consensus 327 ~d~~~~~-~~~~~~~~~~~~v~~~~~sp~~-~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 383 (406)
||++.-. +++.+ .+|...|.++.|++.+ ++|+|++.|++|.+|+.++++.+++++.
T Consensus 237 WDlR~assP~k~~-~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~ 294 (1049)
T KOG0307|consen 237 WDLRFASSPLKIL-EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA 294 (1049)
T ss_pred ecccccCCchhhh-cccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC
Confidence 9998644 45555 5899999999999966 8899999999999999999999999886
No 153
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=6.9e-21 Score=157.46 Aligned_cols=261 Identities=15% Similarity=0.136 Sum_probs=176.7
Q ss_pred cEEEEEEecCCCCccccceeEE--ecCCCCceEEEEccC----CCeEEEEe-cCCeEEEEEecccccceeecceecccee
Q 015490 88 AVLLSHFDFASNSLSDQPVAEL--RTDSDLPYRMAIHPH----GDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKV 160 (406)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~sp~----~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 160 (406)
.+.++.+..+... ..++.+ ..|++.-+.++|+-+ ..++++++ -|.++| ++... .+.
T Consensus 65 rvtiy~c~~d~~i---r~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrV--id~~~------------~~~ 127 (385)
T KOG1034|consen 65 RVTIYECPGDGGI---RLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRV--IDVVS------------GQC 127 (385)
T ss_pred EEEEEEECCccce---eeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEE--Eecch------------hhh
Confidence 5677777665521 122222 247778888888754 23566665 444444 55543 333
Q ss_pred eeccccc-CcEEEEEECCCC-CEEEEeeCCCeEEEEeCCCcceEeee---eccCCceeEEEEccCCCEEEEEeCCCCEEE
Q 015490 161 LSQLENV-GQQLALTFDSEG-TIFAAGSENGNLRVFKWPSLEIILNE---SEAHASVKDLSFSPDGKFLVSLGNRGPGRV 235 (406)
Q Consensus 161 ~~~~~~~-~~v~~~~~s~~g-~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~s~s~d~~i~i 235 (406)
...+.+| ..|+.+.+.|+. +++++++.|..|++|++++..++..+ .+|.+.|.++.|+++|.+|++++.|.++++
T Consensus 128 ~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~ 207 (385)
T KOG1034|consen 128 SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKL 207 (385)
T ss_pred ccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEE
Confidence 3334444 789999999975 79999999999999999999998776 456679999999999999999999999999
Q ss_pred EEcCCCeeeeeccc---------------------------CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC
Q 015490 236 WDLASSAVATPLAK---------------------------ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT 288 (406)
Q Consensus 236 wd~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~ 288 (406)
|++...+....++. -|...|.|+.|-- . ++.+-+-++.|..|...
T Consensus 208 W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d------~ilSkscenaI~~w~pg 279 (385)
T KOG1034|consen 208 WRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--D------FILSKSCENAIVCWKPG 279 (385)
T ss_pred EecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--h------heeecccCceEEEEecc
Confidence 99974322111110 1122233333322 1 23455567799999872
Q ss_pred -Cce-------------EEEEeeecCCCeEEE--EEcCCCCEEEEEeCCCcEEEEECCCceEEEE--ee-cccccceEEE
Q 015490 289 -TWK-------------RIRTKQVVREPVSSF--NVSADGKLLAVGTASGDISIIDSSSLQVRTA--VK-KAHLGIVTAL 349 (406)
Q Consensus 289 -~~~-------------~~~~~~~~~~~i~~~--~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~-~~~~~~v~~~ 349 (406)
-.+ .+.++......|.-+ +|.|-++.||.|...|.|.+||++...+... +. ......|+..
T Consensus 280 kl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~ 359 (385)
T KOG1034|consen 280 KLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQT 359 (385)
T ss_pred hhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeee
Confidence 111 123333334445444 5567789999999999999999998765322 11 1123568999
Q ss_pred EEcCCCCeEEEEECCCcEEEEEec
Q 015490 350 AFSYDSRALVSASMDSSVRVTVIE 373 (406)
Q Consensus 350 ~~sp~~~~l~s~s~dg~i~iw~~~ 373 (406)
+|+.||..|+..+.|++|.-||.-
T Consensus 360 sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 360 SFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eecccCcEEEEEeCCCcEEEEEee
Confidence 999999999999999999999864
No 154
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.3e-20 Score=155.33 Aligned_cols=208 Identities=18% Similarity=0.205 Sum_probs=151.6
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcce-----EeeeeccCCceeEEEEccCCCEEEEE-eCCCCEEEEEcC
Q 015490 166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEI-----ILNESEAHASVKDLSFSPDGKFLVSL-GNRGPGRVWDLA 239 (406)
Q Consensus 166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~-----~~~~~~~~~~i~~~~~s~~~~~l~s~-s~d~~i~iwd~~ 239 (406)
|.+.|++++|+.||++|++++.|++|++|+++.... ++... ..+..+.+.|.||.+-+++. -...++++|-+.
T Consensus 85 H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~ 163 (420)
T KOG2096|consen 85 HKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLV 163 (420)
T ss_pred cCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEEEEEEee
Confidence 448899999999999999999999999999976432 11111 11245889999998865544 456689999774
Q ss_pred CCe---eeee--------cccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEE
Q 015490 240 SSA---VATP--------LAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNV 308 (406)
Q Consensus 240 ~~~---~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 308 (406)
..+ .... +...+...+..+-....+. ++++++.|..|.+|+++ |+.+..+......-+..+.
T Consensus 164 K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k------~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 164 KKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK------YIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred ecccCCCCcccccccccccchhcccceEEEeecCCce------EEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 321 1111 1111222233333333333 45677889999999999 7888888777666788899
Q ss_pred cCCCCEEEEEeCCCcEEEEECC---Cc-----eEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCC
Q 015490 309 SADGKLLAVGTASGDISIIDSS---SL-----QVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGG 380 (406)
Q Consensus 309 sp~~~~l~~~~~dg~i~i~d~~---~~-----~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~ 380 (406)
||+|+++++++-.-.|++|..- .| .....+. +|...|..++|+++.+.++|.|.||+++|||++-.-+.++
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk-GH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q 315 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK-GHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ 315 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheec-cchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCC
Confidence 9999999999998999999862 22 2345564 9999999999999999999999999999999975544444
Q ss_pred ch
Q 015490 381 LN 382 (406)
Q Consensus 381 ~~ 382 (406)
=|
T Consensus 316 Dp 317 (420)
T KOG2096|consen 316 DP 317 (420)
T ss_pred Cc
Confidence 43
No 155
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.87 E-value=1.1e-20 Score=168.92 Aligned_cols=103 Identities=18% Similarity=0.298 Sum_probs=90.7
Q ss_pred EEEcCCCcEEEEEeCCCc-------eEEEEeeecCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCceEEEEeeccccc
Q 015490 273 AAITDRGASIVTWNTTTW-------KRIRTKQVVREPVSSFNVSA-DGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLG 344 (406)
Q Consensus 273 ~~~~~~~~~i~~~d~~~~-------~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 344 (406)
++.+.+||.|++|.+..+ .+...+..|...|+++.|+| -...|++++.|.+|++||+.+++....+. +|.+
T Consensus 643 LAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~-gHtd 721 (1012)
T KOG1445|consen 643 LAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLV-GHTD 721 (1012)
T ss_pred eeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheec-cCcC
Confidence 456678999999987643 34567788889999999999 45689999999999999999999988886 9999
Q ss_pred ceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490 345 IVTALAFSYDSRALVSASMDSSVRVTVIEDKK 376 (406)
Q Consensus 345 ~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~ 376 (406)
.|.+++|||||+.+++.+.||+|++|+-++++
T Consensus 722 qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 722 QIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred ceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence 99999999999999999999999999987754
No 156
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=2e-20 Score=160.61 Aligned_cols=238 Identities=14% Similarity=0.204 Sum_probs=178.1
Q ss_pred eEEEEccCCCeEEEEe----cCCeEEEEEecccccceeecceeccceeeeccccc-----CcEEEEEECC-------CCC
Q 015490 117 YRMAIHPHGDGIICAL----QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-----GQQLALTFDS-------EGT 180 (406)
Q Consensus 117 ~~~~~sp~~~~l~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~s~-------~g~ 180 (406)
-.+..-|+...++++. ...+.+|.++...... +-|| ....|++|.. .|+
T Consensus 129 de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nl---------------YvHHD~ilpafPLC~ewld~~~~~~~~gN 193 (463)
T KOG0270|consen 129 DEEQVKPSDNLILCARNEDDVSYLEVYVYNEEEENL---------------YVHHDFILPAFPLCIEWLDHGSKSGGAGN 193 (463)
T ss_pred ccceeccCCcEEEEeeccCCceEEEEEEEcCCCcce---------------eEecceeccCcchhhhhhhcCCCCCCCcc
Confidence 3567778777777775 3456778776532111 1122 2335677643 357
Q ss_pred EEEEeeCCCeEEEEeCCCcceE---------------------eeeeccCCceeEEEEccCC-CEEEEEeCCCCEEEEEc
Q 015490 181 IFAAGSENGNLRVFKWPSLEII---------------------LNESEAHASVKDLSFSPDG-KFLVSLGNRGPGRVWDL 238 (406)
Q Consensus 181 ~l~~~~~dg~i~vwd~~~~~~~---------------------~~~~~~~~~i~~~~~s~~~-~~l~s~s~d~~i~iwd~ 238 (406)
++|.|+.|..|.|||+.-...+ ....+|...|.+++|+..- +.||+||.|.+|++||+
T Consensus 194 yvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~ 273 (463)
T KOG0270|consen 194 YVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDV 273 (463)
T ss_pred eEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEc
Confidence 9999999999999998421100 0112455578889998754 47899999999999999
Q ss_pred CCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCC-CEEEE
Q 015490 239 ASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADG-KLLAV 317 (406)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~-~~l~~ 317 (406)
.++++...+. +++..|.++.|+|.... ++.+|+.|+++.+.|.|........-...+.|..++|.|.. ..+++
T Consensus 274 ~~g~p~~s~~-~~~k~Vq~l~wh~~~p~-----~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~ 347 (463)
T KOG0270|consen 274 DTGKPKSSIT-HHGKKVQTLEWHPYEPS-----VLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFV 347 (463)
T ss_pred CCCCcceehh-hcCCceeEEEecCCCce-----EEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEE
Confidence 9999999887 56677999999999986 67889999999999999533222222234679999999955 46677
Q ss_pred EeCCCcEEEEECCCc-eEEEEeecccccceEEEEEcCC-CCeEEEEECCCcEEEEEecCCc
Q 015490 318 GTASGDISIIDSSSL-QVRTAVKKAHLGIVTALAFSYD-SRALVSASMDSSVRVTVIEDKK 376 (406)
Q Consensus 318 ~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~sp~-~~~l~s~s~dg~i~iw~~~~~~ 376 (406)
++.||+|+-+|+++. +++.++. .|.++|.++++++. ..+|+|++.|+.|++|++..-.
T Consensus 348 ~tddG~v~~~D~R~~~~~vwt~~-AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 348 STDDGTVYYFDIRNPGKPVWTLK-AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred ecCCceEEeeecCCCCCceeEEE-eccCCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence 788999999999875 8888886 99999999999986 4568899999999999996533
No 157
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=2e-20 Score=166.12 Aligned_cols=245 Identities=15% Similarity=0.221 Sum_probs=190.6
Q ss_pred cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCC--
Q 015490 104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGT-- 180 (406)
Q Consensus 104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-- 180 (406)
..-..+.||++.|.++...|.|.+|++|+ ||+++||.+. +..++++....+.|.|++|+|.+.
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~--------------TgRcvr~~~~d~~I~~vaw~P~~~~~ 456 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIA--------------TGRCVRTVQFDSEIRSVAWNPLSDLC 456 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEee--------------cceEEEEEeecceeEEEEecCCCCce
Confidence 44557899999999999999999999998 9999998776 556666667778999999999764
Q ss_pred EEEEeeCCCeEEEEeC---------------------------------CC---c-ceEeeeeccCCceeEEEEccCCCE
Q 015490 181 IFAAGSENGNLRVFKW---------------------------------PS---L-EIILNESEAHASVKDLSFSPDGKF 223 (406)
Q Consensus 181 ~l~~~~~dg~i~vwd~---------------------------------~~---~-~~~~~~~~~~~~i~~~~~s~~~~~ 223 (406)
.||++-.+ .+.|.+. .. . .-+.....|...|..+.|+..|.+
T Consensus 457 vLAvA~~~-~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDY 535 (733)
T KOG0650|consen 457 VLAVAVGE-CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDY 535 (733)
T ss_pred eEEEEecC-ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCce
Confidence 44444332 2333332 10 0 012233456668999999999999
Q ss_pred EEEEeCC---CCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC
Q 015490 224 LVSLGNR---GPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR 300 (406)
Q Consensus 224 l~s~s~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 300 (406)
|++...+ ..|.|.++........+... .+.+.++.|+|...+ + ++++ ...|++||+.....++.+....
T Consensus 536 latV~~~~~~~~VliHQLSK~~sQ~PF~ks-kG~vq~v~FHPs~p~---l-fVaT---q~~vRiYdL~kqelvKkL~tg~ 607 (733)
T KOG0650|consen 536 LATVMPDSGNKSVLIHQLSKRKSQSPFRKS-KGLVQRVKFHPSKPY---L-FVAT---QRSVRIYDLSKQELVKKLLTGS 607 (733)
T ss_pred EEEeccCCCcceEEEEecccccccCchhhc-CCceeEEEecCCCce---E-EEEe---ccceEEEehhHHHHHHHHhcCC
Confidence 9998653 46889999877766666443 345779999999885 3 3332 6789999999887777777777
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc-eEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEe
Q 015490 301 EPVSSFNVSADGKLLAVGTASGDISIIDSSSL-QVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVI 372 (406)
Q Consensus 301 ~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~ 372 (406)
..|..++.+|.|..|++|+.|+.+..||++-. ++.+++ ..|...+++++|++.-.++++|+.||++.|+.-
T Consensus 608 kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~l-r~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 608 KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTL-RLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHh-hhhhhhhhhhhhccccceeeeecCCCcEEEEee
Confidence 88999999999999999999999999999865 445555 479999999999999999999999999999863
No 158
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.87 E-value=9.8e-20 Score=154.72 Aligned_cols=285 Identities=13% Similarity=0.185 Sum_probs=192.4
Q ss_pred cEEEEEEecCCC---CccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccce-eecce-eccceee
Q 015490 88 AVLLSHFDFASN---SLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEI-RRLGV-KISEKVL 161 (406)
Q Consensus 88 ~~~~~~~~~~~~---~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~-~~~~~-~~~~~~~ 161 (406)
.+.++.+..... ......+..+..|+..|+++.|+|+|..|++|+ ++.+.+|.-........ ..... ++.-...
T Consensus 37 ~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~ 116 (434)
T KOG1009|consen 37 DIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVK 116 (434)
T ss_pred ceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEE
Confidence 456666554332 234466778999999999999999999999998 56666665441100000 00000 0012223
Q ss_pred ecccc-cCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCC
Q 015490 162 SQLEN-VGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLAS 240 (406)
Q Consensus 162 ~~~~~-~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~ 240 (406)
..+.+ ...+..++|+|++.++++++.|..+++||+..|+....+..|..-+..++|.|-++++++-+.|...+.+.+..
T Consensus 117 k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 117 KVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKL 196 (434)
T ss_pred EEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeee
Confidence 33443 47899999999999999999999999999999999988888888999999999999999999998777777654
Q ss_pred Ceeeeecc---------cC---------C----cceEEEEEEEcCCCCceEEEEEEEcC--C-----CcEEEEEeCCC-c
Q 015490 241 SAVATPLA---------KE---------N----DELFASCRFSPLNNEDYVLYIAAITD--R-----GASIVTWNTTT-W 290 (406)
Q Consensus 241 ~~~~~~~~---------~~---------~----~~~~~~~~~~~~~~~~~~l~~~~~~~--~-----~~~i~~~d~~~-~ 290 (406)
.+...... .+ + ......++|+|+|.- ++.-.+. . -+..++++-.. .
T Consensus 197 ~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~l----lvtPag~~~~g~~~~~n~tYvfsrk~l~ 272 (434)
T KOG1009|consen 197 KQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSL----LVTPAGLFKVGGGVFRNTSYVFSRKDLK 272 (434)
T ss_pred eeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcE----EEcccceeeeCCceeeceeEeecccccc
Confidence 33222111 00 1 112456788898872 2211110 0 12234444322 2
Q ss_pred eEEEEeeecCCCeEEEEEcC------------------CCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEc
Q 015490 291 KRIRTKQVVREPVSSFNVSA------------------DGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFS 352 (406)
Q Consensus 291 ~~~~~~~~~~~~i~~~~~sp------------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s 352 (406)
++...+.....+...+.|+| -+-.+|+++ ...|++||.++..++.....-|-..++.++|+
T Consensus 273 rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws 351 (434)
T KOG1009|consen 273 RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWS 351 (434)
T ss_pred CceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeec
Confidence 23444444445555555554 122345555 55799999999999988887899999999999
Q ss_pred CCCCeEEEEECCCcEEEEEecCCcC
Q 015490 353 YDSRALVSASMDSSVRVTVIEDKKK 377 (406)
Q Consensus 353 p~~~~l~s~s~dg~i~iw~~~~~~~ 377 (406)
+||.+|+..|.||...+-.++..+.
T Consensus 352 ~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 352 DDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred CCCcEEEEeccCCceEEEEEcchhc
Confidence 9999999999999988887766543
No 159
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.86 E-value=5.3e-20 Score=166.62 Aligned_cols=249 Identities=17% Similarity=0.206 Sum_probs=181.1
Q ss_pred eEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECC------------CCCEEE
Q 015490 117 YRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDS------------EGTIFA 183 (406)
Q Consensus 117 ~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------------~g~~l~ 183 (406)
.++.|.+....|.+.. |..+.| ||..+... ..++...+.|...|+.+.--| .+ .|.
T Consensus 328 IA~~Fdet~~klscVYndhSlYv--WDvrD~~k--------vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~-cF~ 396 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYV--WDVRDVNK--------VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRG-CFT 396 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEE--Eecccccc--------ccceeeeeeccceeeeeccccccccCcccccCCcc-cee
Confidence 4778999888888886 665555 44443322 222333344555555554333 22 488
Q ss_pred EeeCCCeEEEEeCCCcc---eE----------------------------------eeeeccCCceeEEEEccCCCEEEE
Q 015490 184 AGSENGNLRVFKWPSLE---II----------------------------------LNESEAHASVKDLSFSPDGKFLVS 226 (406)
Q Consensus 184 ~~~~dg~i~vwd~~~~~---~~----------------------------------~~~~~~~~~i~~~~~s~~~~~l~s 226 (406)
+++.|++|++|++..+. .. .........+++++.+|+|++|++
T Consensus 397 TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAs 476 (1080)
T KOG1408|consen 397 TCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLAS 476 (1080)
T ss_pred EecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecc
Confidence 99999999999985421 10 001112236899999999999999
Q ss_pred EeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC-ceEEEEeeecC-----
Q 015490 227 LGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT-WKRIRTKQVVR----- 300 (406)
Q Consensus 227 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~----- 300 (406)
|..-|+++||++...+....+..| ...|.|+.|+...-. .-++++++.|..|++||... ..++.++..|.
T Consensus 477 GDr~GnlrVy~Lq~l~~~~~~eAH-esEilcLeyS~p~~~---~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITs 552 (1080)
T KOG1408|consen 477 GDRGGNLRVYDLQELEYTCFMEAH-ESEILCLEYSFPVLT---NKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITS 552 (1080)
T ss_pred cCccCceEEEEehhhhhhhheecc-cceeEEEeecCchhh---hHhhhhccCCceEEEEecccccchhhhhcccccceeE
Confidence 999999999999888777777655 455778988754322 12678889999999999752 22233332222
Q ss_pred --------------------------------------------CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEE
Q 015490 301 --------------------------------------------EPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRT 336 (406)
Q Consensus 301 --------------------------------------------~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~ 336 (406)
..++.|+..|..+++++++.|..|+|||+.+++..+
T Consensus 553 vKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k 632 (1080)
T KOG1408|consen 553 VKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVK 632 (1080)
T ss_pred EEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceee
Confidence 245677777888899999999999999999999999
Q ss_pred Eeec--ccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCC
Q 015490 337 AVKK--AHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGG 380 (406)
Q Consensus 337 ~~~~--~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~ 380 (406)
.++. +|.+....+...|.|-||++.+.|.++.++|+.+++.++.
T Consensus 633 ~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~ 678 (1080)
T KOG1408|consen 633 SFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ 678 (1080)
T ss_pred eecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh
Confidence 9873 4667788999999999999999999999999999988654
No 160
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.86 E-value=5.8e-19 Score=159.45 Aligned_cols=271 Identities=16% Similarity=0.181 Sum_probs=187.4
Q ss_pred ccceeEEecCCCCceEEEEccCCC---eEEEEe-cCCeEEEEEecccccc--ee--ecceeccce---e---e-------
Q 015490 103 DQPVAELRTDSDLPYRMAIHPHGD---GIICAL-QNSCRLFEWDEVENTE--IR--RLGVKISEK---V---L------- 161 (406)
Q Consensus 103 ~~~~~~~~~h~~~v~~~~~sp~~~---~l~~~~-~~~~~i~~~~~~~~~~--~~--~~~~~~~~~---~---~------- 161 (406)
-+.+..+.||++.|.+++|...+. +|++++ |..+|||.+...+... .+ .....+... . +
T Consensus 181 f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~e 260 (764)
T KOG1063|consen 181 FARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFE 260 (764)
T ss_pred eeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehh
Confidence 467889999999999999987654 444555 8899999887655222 00 011110100 0 0
Q ss_pred ecc-cccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc--ceEe--e---eeccCCceeEEEEccCCCEEEEEeCCCCE
Q 015490 162 SQL-ENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSL--EIIL--N---ESEAHASVKDLSFSPDGKFLVSLGNRGPG 233 (406)
Q Consensus 162 ~~~-~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~--~~~~--~---~~~~~~~i~~~~~s~~~~~l~s~s~d~~i 233 (406)
..+ .|.+.|.++.|+|.+..|++++.|.++.+|...+. --+. . ..+......+..|+|+++.+++-+.-|..
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 112 45588999999999988999999999999987543 2111 1 11222368899999999999999999999
Q ss_pred EEEEcCCCe--eeeecccCCcceEEEEEEEcCCCCceEEE----------------------------------------
Q 015490 234 RVWDLASSA--VATPLAKENDELFASCRFSPLNNEDYVLY---------------------------------------- 271 (406)
Q Consensus 234 ~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------------------------------------- 271 (406)
++|...... ........|-..|..++|+|.|.. ++.
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGef--lLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~ 418 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEF--LLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE 418 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecCCCCE--EEEeccccceeeecccccccceeeecccccccccceeeehccC
Confidence 999833221 122333445567899999999884 100
Q ss_pred --EEEEcCCCcEEEEEeCCC-------------------------------------------ce---------------
Q 015490 272 --IAAITDRGASIVTWNTTT-------------------------------------------WK--------------- 291 (406)
Q Consensus 272 --~~~~~~~~~~i~~~d~~~-------------------------------------------~~--------------- 291 (406)
..+++.+...+++|+... +.
T Consensus 419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~ 498 (764)
T KOG1063|consen 419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC 498 (764)
T ss_pred CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence 011122223334433220 00
Q ss_pred ------------------EEEEeeecCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCceEEEEeecccccceEE
Q 015490 292 ------------------RIRTKQVVREPVSSFNVSADGKLLAVGTAS-----GDISIIDSSSLQVRTAVKKAHLGIVTA 348 (406)
Q Consensus 292 ------------------~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~v~~ 348 (406)
.+..+.+|...|++++.+|+|+++|+++.. ..|++|+..+......+. +|.-.|+.
T Consensus 499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~-~HsLTVT~ 577 (764)
T KOG1063|consen 499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELE-GHSLTVTR 577 (764)
T ss_pred hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheec-ccceEEEE
Confidence 001122344589999999999999999874 359999999998888886 89999999
Q ss_pred EEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490 349 LAFSYDSRALVSASMDSSVRVTVIEDKK 376 (406)
Q Consensus 349 ~~~sp~~~~l~s~s~dg~i~iw~~~~~~ 376 (406)
++|||||++|++.|.|.++.+|......
T Consensus 578 l~FSpdg~~LLsvsRDRt~sl~~~~~~~ 605 (764)
T KOG1063|consen 578 LAFSPDGRYLLSVSRDRTVSLYEVQEDI 605 (764)
T ss_pred EEECCCCcEEEEeecCceEEeeeeeccc
Confidence 9999999999999999999999985543
No 161
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.86 E-value=5.8e-18 Score=152.72 Aligned_cols=263 Identities=11% Similarity=0.120 Sum_probs=169.6
Q ss_pred cEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeeccc
Q 015490 88 AVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE 165 (406)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (406)
.+.++.++... . ...+..+. +.+.+..++++|++++|++++ ++.+.+|.++ .++. .. ......
T Consensus 13 ~I~~~~~~~~g-~--l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~-~~g~-l~---------~~~~~~ 77 (330)
T PRK11028 13 QIHVWNLNHEG-A--LTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA-DDGA-LT---------FAAESP 77 (330)
T ss_pred CEEEEEECCCC-c--eeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEEC-CCCc-eE---------Eeeeec
Confidence 45666664321 2 13444443 346678999999999998875 5666667665 2221 11 111111
Q ss_pred ccCcEEEEEECCCCCEEEEeeC-CCeEEEEeCCCcc----eEeeeeccCCceeEEEEccCCCEEEEEe-CCCCEEEEEcC
Q 015490 166 NVGQQLALTFDSEGTIFAAGSE-NGNLRVFKWPSLE----IILNESEAHASVKDLSFSPDGKFLVSLG-NRGPGRVWDLA 239 (406)
Q Consensus 166 ~~~~v~~~~~s~~g~~l~~~~~-dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~~s~~~~~l~s~s-~d~~i~iwd~~ 239 (406)
..+....++|+|+++++++++. ++.|.+|++++.. ....+ .+......++++|+++++++++ .++.|.+||+.
T Consensus 78 ~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~ 156 (330)
T PRK11028 78 LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLS 156 (330)
T ss_pred CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEEC
Confidence 2234568999999998888764 7899999996432 12211 2223567889999999886655 56899999997
Q ss_pred CCeeeee-----cccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC--c--eEEEEeeec------CCCeE
Q 015490 240 SSAVATP-----LAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT--W--KRIRTKQVV------REPVS 304 (406)
Q Consensus 240 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~--~--~~~~~~~~~------~~~i~ 304 (406)
+...+.. .....+.....++|+|+++. +.++...++.|.+||++. + +.+..+... .....
T Consensus 157 ~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~-----lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 231 (330)
T PRK11028 157 DDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQY-----AYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAA 231 (330)
T ss_pred CCCcccccCCCceecCCCCCCceEEECCCCCE-----EEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccce
Confidence 6332211 11112333567999999985 444455689999999873 2 223333221 11234
Q ss_pred EEEEcCCCCEEEEEeC-CCcEEEEECCCce----EEEEeecccccceEEEEEcCCCCeEEEEEC-CCcEEEEEec
Q 015490 305 SFNVSADGKLLAVGTA-SGDISIIDSSSLQ----VRTAVKKAHLGIVTALAFSYDSRALVSASM-DSSVRVTVIE 373 (406)
Q Consensus 305 ~~~~sp~~~~l~~~~~-dg~i~i~d~~~~~----~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~-dg~i~iw~~~ 373 (406)
.+.++|+|++++++.. ++.|.+|++.... .+..... ......+.++|||++|+++.. +++|.+|+++
T Consensus 232 ~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~--~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 232 DIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT--ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred eEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec--cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 6889999999999865 7889999986432 2222221 124568999999999987775 8999999985
No 162
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.3e-20 Score=166.34 Aligned_cols=261 Identities=16% Similarity=0.173 Sum_probs=192.2
Q ss_pred ceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCEE
Q 015490 105 PVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIF 182 (406)
Q Consensus 105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l 182 (406)
+..++..|.+.++.++|+|....|++++ ++.+++|++...... . ....+++.+++.| ++|.|++++++++.+
T Consensus 286 ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s--~----~~~~epi~tfraH~gPVl~v~v~~n~~~~ 359 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS--A----EKDVEPILTFRAHEGPVLCVVVPSNGEHC 359 (577)
T ss_pred eeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc--c----ccceeeeEEEecccCceEEEEecCCceEE
Confidence 3348899999999999999999999998 999999988321110 0 0034455666665 899999999999999
Q ss_pred EEeeCCCeEEEEeCCCc----------ceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCC-
Q 015490 183 AAGSENGNLRVFKWPSL----------EIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKEN- 251 (406)
Q Consensus 183 ~~~~~dg~i~vwd~~~~----------~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~- 251 (406)
++|+.||+|+.|++... .....+.+|.+.|+.+++|+....|++++.||++++|+...... ..+....
T Consensus 360 ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e 438 (577)
T KOG0642|consen 360 YSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKE 438 (577)
T ss_pred EeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccc
Confidence 99999999999976421 23345778888999999999999999999999999999876655 3332221
Q ss_pred cceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeec-------CCCeEEEEEcCCCCEEEEEeCCCcE
Q 015490 252 DELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVV-------REPVSSFNVSADGKLLAVGTASGDI 324 (406)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-------~~~i~~~~~sp~~~~l~~~~~dg~i 324 (406)
.....++.+-..... ...+....+.-.++++.....+..+... ...+..+.++|.+.+.+++..|+.|
T Consensus 439 ~g~Plsvd~~ss~~a-----~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~I 513 (577)
T KOG0642|consen 439 HGYPLSVDRTSSRPA-----HSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSI 513 (577)
T ss_pred cCCcceEeeccchhH-----hhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCce
Confidence 122334444333311 1111122222333444443333333221 1346778899999999999999999
Q ss_pred EEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCC
Q 015490 325 SIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKS 378 (406)
Q Consensus 325 ~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~ 378 (406)
+++|..++.++.... .|...++++++.|+|.+|++++.|+.+++|.+.....+
T Consensus 514 r~~dn~~~~~l~s~~-a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 514 RFFDNKTGKILHSMV-AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred ecccccccccchhee-eccceecceeecCCCceEEeecCCceeehhhccchhee
Confidence 999999999999886 89999999999999999999999999999999766543
No 163
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.85 E-value=4.8e-18 Score=142.97 Aligned_cols=242 Identities=18% Similarity=0.228 Sum_probs=180.3
Q ss_pred CCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCC--CeE
Q 015490 114 DLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSEN--GNL 191 (406)
Q Consensus 114 ~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d--g~i 191 (406)
..+..+.|+.+...|..|+....++|..+... +..........|..+-||.+ ++|..+.+ ..+
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~-------------k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~L 70 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDGYKIFSCSPFE-------------KCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKL 70 (391)
T ss_pred cceeeeeeccceeEEEccCCCceeEEecCchH-------------HhhcccCCCeEEEEeecccc--eeEEEecCCCceE
Confidence 44566779999888888885566888766431 11111222344566667654 55555443 358
Q ss_pred EEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEE
Q 015490 192 RVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271 (406)
Q Consensus 192 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 271 (406)
+++++..+..+..+.- ...|.++.++. ++|+++-.+ .|+|||+++.+.++++..-...+-..++++++....++.
T Consensus 71 kv~~~Kk~~~ICe~~f-pt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylA- 145 (391)
T KOG2110|consen 71 KVVHFKKKTTICEIFF-PTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLA- 145 (391)
T ss_pred EEEEcccCceEEEEec-CCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEE-
Confidence 9999888777766543 34688999865 367766665 499999999999998876533334456666665531121
Q ss_pred EEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCc-EEEEECCCceEEEEeecccc-cceEEE
Q 015490 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGD-ISIIDSSSLQVRTAVKKAHL-GIVTAL 349 (406)
Q Consensus 272 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~-~~v~~~ 349 (406)
.-.....|.|.+||..+-+.+..+..|++.+.+++|+++|.+||++++.|+ |||+.+.+++.+.++.+|-. ..|.++
T Consensus 146 -yp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL 224 (391)
T KOG2110|consen 146 -YPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSL 224 (391)
T ss_pred -ecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEE
Confidence 122344789999999999999999999999999999999999999999998 69999999999999976543 347799
Q ss_pred EEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490 350 AFSYDSRALVSASMDSSVRVTVIEDKK 376 (406)
Q Consensus 350 ~~sp~~~~l~s~s~dg~i~iw~~~~~~ 376 (406)
+|+|++++|++.|..++|+++.++...
T Consensus 225 ~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 225 SFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EECCCCCeEEEecCCCeEEEEEecccc
Confidence 999999999999999999999997643
No 164
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.84 E-value=4.1e-19 Score=159.80 Aligned_cols=259 Identities=12% Similarity=0.142 Sum_probs=191.6
Q ss_pred EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccC
Q 015490 90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVG 168 (406)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (406)
.++.+|++.+ ..+.++++|.+.|+|++|+.||+.+++|+ |..+.+|.-.. +-+..+.|.+
T Consensus 34 rlliyD~ndG----~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---------------EG~LkYSH~D 94 (1081)
T KOG1538|consen 34 RLLVYDTSDG----TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---------------EGILKYSHND 94 (1081)
T ss_pred EEEEEeCCCc----ccccccccccceEEEEEEccCCceeccCCCceeEEEecccc---------------cceeeeccCC
Confidence 5666777663 47889999999999999999999999997 77777765322 1223355778
Q ss_pred cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee-ec
Q 015490 169 QQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT-PL 247 (406)
Q Consensus 169 ~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~ 247 (406)
.|.|+.|+|-.+.|++++-+ ..-+|..+..... .. .....+.+.+|..||++++.|-.+|+|.+-+-...+... .-
T Consensus 95 ~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~-K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~R 171 (1081)
T KOG1538|consen 95 AIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVS-KH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIER 171 (1081)
T ss_pred eeeEeecCchHHHhhhcchh-hccccChhhhhHH-hh-hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeC
Confidence 99999999999999998764 5678886543222 11 123378999999999999999999999998754332222 23
Q ss_pred ccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 015490 248 AKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISII 327 (406)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~ 327 (406)
++....++.+++|+|....... =+++..+.+.++.++.+.. +.+..-+.-.....|+.+.++|.++..|+.|+.+.+|
T Consensus 172 pgg~Nspiwsi~~~p~sg~G~~-di~aV~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~f 249 (1081)
T KOG1538|consen 172 PGGSNSPIWSICWNPSSGEGRN-DILAVADWGQTLSFYQLSG-KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLF 249 (1081)
T ss_pred CCCCCCCceEEEecCCCCCCcc-ceEEEEeccceeEEEEecc-eeecccccCCCCchhheeccCCcEEEEccCCCceEEE
Confidence 3456678999999997643111 1344446666666666653 3333222233455789999999999999999999999
Q ss_pred ECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490 328 DSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED 374 (406)
Q Consensus 328 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~ 374 (406)
-. .|-.+.++- ....+|+.++..|++++++.|+.||+|.-|++-.
T Consensus 250 TR-~GvrLGTvg-~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 250 TR-DGVRLGTVG-EQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred ee-cCeEEeecc-ccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 74 477777774 4677899999999999999999999999998753
No 165
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.84 E-value=1.4e-18 Score=147.27 Aligned_cols=218 Identities=12% Similarity=0.131 Sum_probs=164.9
Q ss_pred ceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCC-C
Q 015490 105 PVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEG-T 180 (406)
Q Consensus 105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g-~ 180 (406)
..-.+.||+++|..++|+|.....++++ |.++.||.+. .+...+.+ .+++..+.+| ..|..++|+|.. +
T Consensus 73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IP--e~~l~~~l-----tepvv~L~gH~rrVg~V~wHPtA~N 145 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIP--ENGLTRDL-----TEPVVELYGHQRRVGLVQWHPTAPN 145 (472)
T ss_pred CCCCccCccccccccccCccCCceeecCCCCceEEEEECC--CcccccCc-----ccceEEEeecceeEEEEeecccchh
Confidence 3445789999999999999888766665 5556665543 33333322 2334444454 789999999965 7
Q ss_pred EEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEE
Q 015490 181 IFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRF 260 (406)
Q Consensus 181 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 260 (406)
.|++++.|.+|.+|++.+++.+..+. |.+.|+++.|+.||.+|++++.|..|+|||.++++.+..-..|.+.....+.|
T Consensus 146 VLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raif 224 (472)
T KOG0303|consen 146 VLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIF 224 (472)
T ss_pred hHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEE
Confidence 88999999999999999999888776 88899999999999999999999999999999999998887777766667788
Q ss_pred EcCCCCceEEEEEEEcCCCcEEEEEeCCCceE---EEEeeecCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCceE
Q 015490 261 SPLNNEDYVLYIAAITDRGASIVTWNTTTWKR---IRTKQVVREPVSSFNVSADGKLLAVGTA-SGDISIIDSSSLQV 334 (406)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~~~~ 334 (406)
..++.- +..-.+...+..+-+||..+... ..++.. .+.|.---|.+|.+.++.++. |+.|+.|.+.+..+
T Consensus 225 l~~g~i---~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 225 LASGKI---FTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred eccCce---eeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 888762 22222334578899999876443 333332 345666678899888877665 99999999876553
No 166
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.84 E-value=7.3e-19 Score=143.15 Aligned_cols=258 Identities=16% Similarity=0.201 Sum_probs=178.9
Q ss_pred ccccccCCCCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCC---ccccceeEEe-cCCCCceEEEEccCCCeEEEEecC
Q 015490 59 VADKSDDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNS---LSDQPVAELR-TDSDLPYRMAIHPHGDGIICALQN 134 (406)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~~~~~~ 134 (406)
+=.....|.+.+.+.++-. ..+..|+-....++.+..+-+. .+.+.+..+. .+-+.|.|+.|.|++..+++-.++
T Consensus 66 vw~las~P~d~~ilaT~yn-~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~dn 144 (370)
T KOG1007|consen 66 VWDLASSPFDQRILATVYN-DTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMDDN 144 (370)
T ss_pred eehhhcCCCCCceEEEEEe-ccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEeccC
Confidence 3344445555565554422 1122334445566665544322 2234555554 566799999999999999998899
Q ss_pred CeEEEEEecccccceeecceeccceeeecccccCcEEEEEECC--CCCEEEEeeCCCeEEEEeCCCcceEeeeeccCC-c
Q 015490 135 SCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDS--EGTIFAAGSENGNLRVFKWPSLEIILNESEAHA-S 211 (406)
Q Consensus 135 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~ 211 (406)
.+.+|..+..... ...+.. .....+....++-+||| ||+.+++. .|++++.||+++..+...+...++ .
T Consensus 145 ~i~l~~l~ess~~-vaev~s------s~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~ 216 (370)
T KOG1007|consen 145 NIVLWSLDESSKI-VAEVLS------SESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQR 216 (370)
T ss_pred ceEEEEcccCcch-heeecc------cccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcce
Confidence 9999887653221 111111 11122445678889999 78888775 578999999999988888776665 8
Q ss_pred eeEEEEccCCC-EEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc
Q 015490 212 VKDLSFSPDGK-FLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW 290 (406)
Q Consensus 212 i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~ 290 (406)
|.++.|+|+.+ +|++|++||.|++||.+..+....-...|...+.++.|+|.... ++.+++.|..|.+|...+-
T Consensus 217 vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdq-----LiLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 217 VRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQ-----LILSGGSDSAVNLSCASSV 291 (370)
T ss_pred eeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccce-----EEEecCCCceeEEEecccc
Confidence 99999999876 68889999999999998765443333456778999999999887 6677888999999876421
Q ss_pred -----------------------------eEEEEeeecCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECC
Q 015490 291 -----------------------------KRIRTKQVVREPVSSFNVSADGK-LLAVGTASGDISIIDSS 330 (406)
Q Consensus 291 -----------------------------~~~~~~~~~~~~i~~~~~sp~~~-~l~~~~~dg~i~i~d~~ 330 (406)
..+.++..|...|++++||.-.. .+|+-+.||.+.|=.+.
T Consensus 292 SSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 292 SSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 12335666788999999998554 55667889998886654
No 167
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.6e-17 Score=132.16 Aligned_cols=248 Identities=11% Similarity=0.125 Sum_probs=175.0
Q ss_pred cceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccc-eee-cceeccceeeec-ccccCcEEEEEECCCCC
Q 015490 104 QPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTE-IRR-LGVKISEKVLSQ-LENVGQQLALTFDSEGT 180 (406)
Q Consensus 104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~-~~~-~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~ 180 (406)
.++...++|.++|+.++|+ ..+|++++|+.++-|.|+...... .+. ... ..+.+. .-.-..|+++...|..+
T Consensus 53 ~~iv~eqahdgpiy~~~f~--d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~---~~P~~~~~~evPeINam~ldP~en 127 (325)
T KOG0649|consen 53 LKIVPEQAHDGPIYYLAFH--DDFLLSGGDGLVYGWEWNEEEESLATKRLWEV---KIPMQVDAVEVPEINAMWLDPSEN 127 (325)
T ss_pred cceeeccccCCCeeeeeee--hhheeeccCceEEEeeehhhhhhccchhhhhh---cCccccCcccCCccceeEeccCCC
Confidence 4566779999999999998 467888889999999997543211 111 111 011111 11225689999999877
Q ss_pred EEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccC---------C
Q 015490 181 IFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKE---------N 251 (406)
Q Consensus 181 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~---------~ 251 (406)
-+++++.|+.++-||+++|+....+.+|.+-|.++.--.....+++|+.||++++||.++++++..+... .
T Consensus 128 Si~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~ 207 (325)
T KOG0649|consen 128 SILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDW 207 (325)
T ss_pred cEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCccc
Confidence 7777778999999999999999999999999999998555557999999999999999999988876532 2
Q ss_pred cceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 015490 252 DELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSS 331 (406)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~ 331 (406)
+..+.+++-+.+ +++ ++....+.+|.+++.++...+... ..+..+.|.. ..+++++..+.|.-|.+.
T Consensus 208 g~wigala~~ed--------Wlv-CGgGp~lslwhLrsse~t~vfpip-a~v~~v~F~~--d~vl~~G~g~~v~~~~l~- 274 (325)
T KOG0649|consen 208 GKWIGALAVNED--------WLV-CGGGPKLSLWHLRSSESTCVFPIP-ARVHLVDFVD--DCVLIGGEGNHVQSYTLN- 274 (325)
T ss_pred CceeEEEeccCc--------eEE-ecCCCceeEEeccCCCceEEEecc-cceeEeeeec--ceEEEeccccceeeeeec-
Confidence 333444444332 222 345678999999999888887754 5678888874 468888888889999875
Q ss_pred ceEEEEeecccccceEEEEEcCCC-CeEEEEECCCcEEEE
Q 015490 332 LQVRTAVKKAHLGIVTALAFSYDS-RALVSASMDSSVRVT 370 (406)
Q Consensus 332 ~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~s~dg~i~iw 370 (406)
|....... ......++..|+... +++-.++..+++.|+
T Consensus 275 Gvl~a~ip-~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 275 GVLQANIP-VESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred cEEEEecc-CCccceeeecccCCceEEEEecccceeeeee
Confidence 44444443 333345555665443 445556666777765
No 168
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.82 E-value=1.6e-18 Score=141.35 Aligned_cols=246 Identities=13% Similarity=0.165 Sum_probs=177.3
Q ss_pred CCceEEEEcc--CC-CeEEEEe-----cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCC-----C
Q 015490 114 DLPYRMAIHP--HG-DGIICAL-----QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEG-----T 180 (406)
Q Consensus 114 ~~v~~~~~sp--~~-~~l~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-----~ 180 (406)
-.++++.|+. +. .+|+.|+ .+.+.|..++...++... ...+.+..+++.+.|.|+. .
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~----------~a~fd~~YP~tK~~wiPd~~g~~pd 114 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVE----------DANFDHPYPVTKLMWIPDSKGVYPD 114 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceec----------cCCCCCCCCccceEecCCccccCcc
Confidence 4567888883 33 3566665 466777777654443222 1236788999999999976 3
Q ss_pred EEEEeeCCCeEEEEeCCCcceE----e-----eeeccCCceeEEEEcc-CCCEEEEEeCCCCEEEEEcCCCee--eeecc
Q 015490 181 IFAAGSENGNLRVFKWPSLEII----L-----NESEAHASVKDLSFSP-DGKFLVSLGNRGPGRVWDLASSAV--ATPLA 248 (406)
Q Consensus 181 ~l~~~~~dg~i~vwd~~~~~~~----~-----~~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~iwd~~~~~~--~~~~~ 248 (406)
+||+.+ ..+++|.+...+.. . +-..+..+++++.|+. |-++|.++|-|-+..|||++++.. +++..
T Consensus 115 lLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQL 192 (364)
T KOG0290|consen 115 LLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQL 192 (364)
T ss_pred hhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEE
Confidence 666654 47999998632211 1 1112234899999986 667899999999999999998733 33322
Q ss_pred cCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEE---EeeecCCCeEEEEEcC-CCCEEEEEeCC-Cc
Q 015490 249 KENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIR---TKQVVREPVSSFNVSA-DGKLLAVGTAS-GD 323 (406)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~---~~~~~~~~i~~~~~sp-~~~~l~~~~~d-g~ 323 (406)
-.|+..|..++|...+.. +.++.+.||.++++|++..+.-. +-.....+...++|++ |-+++|+-..| ..
T Consensus 193 IAHDKEV~DIaf~~~s~~-----~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~ 267 (364)
T KOG0290|consen 193 IAHDKEVYDIAFLKGSRD-----VFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNK 267 (364)
T ss_pred EecCcceeEEEeccCccc-----eEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCce
Confidence 345677999999998776 66788899999999999754322 2222245778899988 56788876664 56
Q ss_pred EEEEECCC-ceEEEEeecccccceEEEEEcCC-CCeEEEEECCCcEEEEEecCCcC
Q 015490 324 ISIIDSSS-LQVRTAVKKAHLGIVTALAFSYD-SRALVSASMDSSVRVTVIEDKKK 377 (406)
Q Consensus 324 i~i~d~~~-~~~~~~~~~~~~~~v~~~~~sp~-~~~l~s~s~dg~i~iw~~~~~~~ 377 (406)
|.|.|++. ..++..+. +|.+.|+.++|.|. ..+++|++.|..+.+||+.+.-.
T Consensus 268 V~iLDiR~P~tpva~L~-~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 268 VVILDIRVPCTPVARLR-NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred EEEEEecCCCcceehhh-cCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 99999986 45666774 89999999999996 57899999999999999986543
No 169
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=4.4e-18 Score=139.80 Aligned_cols=202 Identities=14% Similarity=0.219 Sum_probs=153.9
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC----cceEeeeeccCCceeEEEEcc--CCCEEEEEeCCCCEEEEEcC
Q 015490 166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPS----LEIILNESEAHASVKDLSFSP--DGKFLVSLGNRGPGRVWDLA 239 (406)
Q Consensus 166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~i~~~~~s~--~~~~l~s~s~d~~i~iwd~~ 239 (406)
|.+-|+++.|.+.|+.+|+|+.|++|+|||.+. ..+......|.+.|..+.|.+ -|+.+|+++.|+++.||.-.
T Consensus 12 h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~ 91 (361)
T KOG2445|consen 12 HKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQ 91 (361)
T ss_pred CcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeec
Confidence 446689999999999999999999999999743 345667778888999999954 48899999999999999762
Q ss_pred CC-------e--eeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC------ceEEEEee-------
Q 015490 240 SS-------A--VATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT------WKRIRTKQ------- 297 (406)
Q Consensus 240 ~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~------~~~~~~~~------- 297 (406)
.. + ...++ ......++.+.|.|.... +.+++.+.||.+++|+.-. +.....+.
T Consensus 92 ~~~~~~~~~~Wv~~ttl-~DsrssV~DV~FaP~hlG----LklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 92 EKSEEAHGRRWVRRTTL-VDSRSSVTDVKFAPKHLG----LKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred ccccccccceeEEEEEe-ecCCcceeEEEecchhcc----eEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 11 1 11222 234556899999998775 4567778999999998653 22333333
Q ss_pred ecCCCeEEEEEcCC---CCEEEEEeCC-----CcEEEEECCCc----eEEEEeecccccceEEEEEcCC-C---CeEEEE
Q 015490 298 VVREPVSSFNVSAD---GKLLAVGTAS-----GDISIIDSSSL----QVRTAVKKAHLGIVTALAFSYD-S---RALVSA 361 (406)
Q Consensus 298 ~~~~~i~~~~~sp~---~~~l~~~~~d-----g~i~i~d~~~~----~~~~~~~~~~~~~v~~~~~sp~-~---~~l~s~ 361 (406)
.+..+..|+.|+|. ..+||+|+.+ +.++||..... ..+.++. +|..+|++++|.|+ | ..|+++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-d~~dpI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-DHTDPIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-CCCCcceeeeeccccCCceeeEEEe
Confidence 23456789999983 4688888875 47889876543 3455565 89999999999996 2 468999
Q ss_pred ECCCcEEEEEecC
Q 015490 362 SMDSSVRVTVIED 374 (406)
Q Consensus 362 s~dg~i~iw~~~~ 374 (406)
+.|| |+||++..
T Consensus 246 ~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 246 TKDG-VRIFKVKV 257 (361)
T ss_pred ecCc-EEEEEEee
Confidence 9999 99999984
No 170
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.81 E-value=1.6e-18 Score=139.38 Aligned_cols=250 Identities=16% Similarity=0.172 Sum_probs=174.7
Q ss_pred cccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCC
Q 015490 102 SDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGT 180 (406)
Q Consensus 102 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 180 (406)
++.|...+++|...|+++.|-.+++ |++|. .|.+.+|.+..+.... .....+...|+.+.--|+ .
T Consensus 3 pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~------------~~r~~g~~~it~lq~~p~-d 68 (323)
T KOG0322|consen 3 PPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLP------------LIRLFGRLFITNLQSIPN-D 68 (323)
T ss_pred CCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccch------------hhhhhccceeeceeecCC-c
Confidence 3568888999999999999988776 66665 7788888776542211 111123456777777776 3
Q ss_pred EEEEeeCCCeEEEEeCCCcceE--------------eee----------------------------------e-----c
Q 015490 181 IFAAGSENGNLRVFKWPSLEII--------------LNE----------------------------------S-----E 207 (406)
Q Consensus 181 ~l~~~~~dg~i~vwd~~~~~~~--------------~~~----------------------------------~-----~ 207 (406)
.+.+-++|+.+.+|++.-+..+ ..+ . .
T Consensus 69 ~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~ 148 (323)
T KOG0322|consen 69 SLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERS 148 (323)
T ss_pred chhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhcc
Confidence 4667778888888886431100 000 0 0
Q ss_pred cCCceeEEEEcc-CCC--EEEEEeCCCCEEEEEcCCCeeeeeccc---------CCcceEEEEEEEcCCCCceEEEEEEE
Q 015490 208 AHASVKDLSFSP-DGK--FLVSLGNRGPGRVWDLASSAVATPLAK---------ENDELFASCRFSPLNNEDYVLYIAAI 275 (406)
Q Consensus 208 ~~~~i~~~~~s~-~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (406)
..+.+.+..|.- +++ ++++|-++|.+.+||+.++..+..++. .+..++.++.|.+.... -++
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~r------Gis 222 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDR------GIS 222 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcC------CcC
Confidence 011334444322 233 455677899999999998854443332 34556778888765443 355
Q ss_pred cCCCcEEEEEeCCCc--e--EEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEE
Q 015490 276 TDRGASIVTWNTTTW--K--RIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAF 351 (406)
Q Consensus 276 ~~~~~~i~~~d~~~~--~--~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 351 (406)
++.+..+..|.++.. . ...........+..+..-||++.+|+++.|+.||||+.++.+++..+. .|.+.|++++|
T Consensus 223 gga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk-yHsagvn~vAf 301 (323)
T KOG0322|consen 223 GGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK-YHSAGVNAVAF 301 (323)
T ss_pred CCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh-hhhcceeEEEe
Confidence 666777888877532 2 222333334568889999999999999999999999999999999996 89999999999
Q ss_pred cCCCCeEEEEECCCcEEEEEe
Q 015490 352 SYDSRALVSASMDSSVRVTVI 372 (406)
Q Consensus 352 sp~~~~l~s~s~dg~i~iw~~ 372 (406)
+|+...++++|.|++|.+|++
T Consensus 302 spd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 302 SPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CCCCchhhhccCCceEEeeec
Confidence 999999999999999999997
No 171
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=1.8e-17 Score=140.64 Aligned_cols=201 Identities=16% Similarity=0.226 Sum_probs=160.7
Q ss_pred ccCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCc-------ceEeeeeccCCceeEEEEccCC-CEEEEEeCCCCEEEE
Q 015490 166 NVGQQLALTFDS-EGTIFAAGSENGNLRVFKWPSL-------EIILNESEAHASVKDLSFSPDG-KFLVSLGNRGPGRVW 236 (406)
Q Consensus 166 ~~~~v~~~~~s~-~g~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~i~~~~~s~~~-~~l~s~s~d~~i~iw 236 (406)
|.++|..++|+| +.+.+|+|++|.+|.||++..+ +.+..+.+|...|..++|+|.. +.|++++.|.+|.+|
T Consensus 80 Ht~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iW 159 (472)
T KOG0303|consen 80 HTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIW 159 (472)
T ss_pred ccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEE
Confidence 558999999999 5688999999999999998543 2456677888899999999964 578899999999999
Q ss_pred EcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCC-CeEEEEEcCCCCEE
Q 015490 237 DLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVRE-PVSSFNVSADGKLL 315 (406)
Q Consensus 237 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~i~~~~~sp~~~~l 315 (406)
|+.+++.+..+. |...+.++.|+.+|.. +++.+.|..|++||.++++.+..-..|.+ .-..+.|-.+|..+
T Consensus 160 nv~tgeali~l~--hpd~i~S~sfn~dGs~------l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~ 231 (472)
T KOG0303|consen 160 NVGTGEALITLD--HPDMVYSMSFNRDGSL------LCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF 231 (472)
T ss_pred eccCCceeeecC--CCCeEEEEEeccCCce------eeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence 999999888876 6778999999999983 67778999999999999999988877753 34566777888866
Q ss_pred EEEeC---CCcEEEEECCCceE---EEEeecccccceEEEEEcCCCCeEEE-EECCCcEEEEEecCCc
Q 015490 316 AVGTA---SGDISIIDSSSLQV---RTAVKKAHLGIVTALAFSYDSRALVS-ASMDSSVRVTVIEDKK 376 (406)
Q Consensus 316 ~~~~~---dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~sp~~~~l~s-~s~dg~i~iw~~~~~~ 376 (406)
-+|.. +..+-+||..+.+. ...+. .+..|.---|.+|.+.+.. |-.|+.||.|.+.+..
T Consensus 232 tTGfsr~seRq~aLwdp~nl~eP~~~~elD--tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 232 TTGFSRMSERQIALWDPNNLEEPIALQELD--TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeccccccccceeccCcccccCcceeEEec--cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 55543 77899999876443 23332 4455666678888887754 4579999999997654
No 172
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.7e-18 Score=144.20 Aligned_cols=231 Identities=13% Similarity=0.161 Sum_probs=163.5
Q ss_pred CeEEEE-ecCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECC--CCCEEEEeeCCCeEEEEeCCCcce
Q 015490 126 DGIICA-LQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDS--EGTIFAAGSENGNLRVFKWPSLEI 201 (406)
Q Consensus 126 ~~l~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~--~g~~l~~~~~dg~i~vwd~~~~~~ 201 (406)
..++++ +.+.+++|++.. ++ .++.+..+ ..++.++|.. ....+.+++.||+|++||++....
T Consensus 41 ~~vav~lSngsv~lyd~~t--g~------------~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e 106 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT--GQ------------LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE 106 (376)
T ss_pred eeEEEEecCCeEEEEeccc--hh------------hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh
Confidence 445555 489999998874 22 23333333 5567788876 457899999999999999987665
Q ss_pred Eeee--eccC-CceeEEEEccCCCEEEEEeC----CCCEEEEEcCCCee-eeecccCCcceEEEEEEEcCCCCceEEEEE
Q 015490 202 ILNE--SEAH-ASVKDLSFSPDGKFLVSLGN----RGPGRVWDLASSAV-ATPLAKENDELFASCRFSPLNNEDYVLYIA 273 (406)
Q Consensus 202 ~~~~--~~~~-~~i~~~~~s~~~~~l~s~s~----d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (406)
...+ ..+. .+..+++.+-.++.+++|+. +-.+.+||++..+. +..+...|...|+++.|+|.... ++
T Consensus 107 ~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pn-----lL 181 (376)
T KOG1188|consen 107 SARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPN-----LL 181 (376)
T ss_pred hhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCC-----eE
Confidence 4433 3333 26677777767778887753 66799999998776 77777777778999999999997 77
Q ss_pred EEcCCCcEEEEEeCCCceE---EEEeeecCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCceEEE-------------
Q 015490 274 AITDRGASIVTWNTTTWKR---IRTKQVVREPVSSFNVSADG-KLLAVGTASGDISIIDSSSLQVRT------------- 336 (406)
Q Consensus 274 ~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~i~i~d~~~~~~~~------------- 336 (406)
++++-||.|.++|+..... +...-.+...|.++.|..++ +.|.+-+...+..+|++..+....
T Consensus 182 lSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r 261 (376)
T KOG1188|consen 182 LSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLR 261 (376)
T ss_pred EeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHH
Confidence 8999999999999975422 22222344567778887665 346666667777777765433211
Q ss_pred ------------------------------------------------EeecccccceEEEEEcCCCCeEEEEECCCcEE
Q 015490 337 ------------------------------------------------AVKKAHLGIVTALAFSYDSRALVSASMDSSVR 368 (406)
Q Consensus 337 ------------------------------------------------~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~ 368 (406)
.+..+|..-|+++.|...+.++.||+.||.+.
T Consensus 262 ~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~ 341 (376)
T KOG1188|consen 262 KEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQ 341 (376)
T ss_pred hhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEE
Confidence 11133555677777777788999999999999
Q ss_pred EEEecCC
Q 015490 369 VTVIEDK 375 (406)
Q Consensus 369 iw~~~~~ 375 (406)
+|..+..
T Consensus 342 ~Wk~~da 348 (376)
T KOG1188|consen 342 AWKVEDA 348 (376)
T ss_pred EEecCCc
Confidence 9997443
No 173
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.80 E-value=4.8e-18 Score=140.80 Aligned_cols=252 Identities=13% Similarity=0.159 Sum_probs=182.8
Q ss_pred EecCCCCceEEEEcc----C-CCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCC----C
Q 015490 109 LRTDSDLPYRMAIHP----H-GDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSE----G 179 (406)
Q Consensus 109 ~~~h~~~v~~~~~sp----~-~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----g 179 (406)
...|..++..++|++ + -..+++++.+.+.+|....+.+....+. ...-.+......++|+-| .
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~--------y~D~d~~Esfytcsw~yd~~~~~ 105 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQS--------YADEDHDESFYTCSWSYDSNTGN 105 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeee--------ccCCCCCcceEEEEEEecCCCCC
Confidence 457889999999985 2 2345556688888888876542111110 011123355677788653 3
Q ss_pred CEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCC-CEEEEEeCCCCEEEEEcCCCeeeeeccc--CCcceEE
Q 015490 180 TIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDG-KFLVSLGNRGPGRVWDLASSAVATPLAK--ENDELFA 256 (406)
Q Consensus 180 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~--~~~~~~~ 256 (406)
.++|+|+.-|.|+|.|+.++++...+.+|...|+.+.++|+. ++++++|.|.+|++|++++..++..+.+ .|...|.
T Consensus 106 p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVL 185 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVL 185 (385)
T ss_pred eeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEE
Confidence 588999999999999999999999999999999999999975 6899999999999999999999988864 4556688
Q ss_pred EEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEE----------------------------EeeecCCCeEEEEE
Q 015490 257 SCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIR----------------------------TKQVVREPVSSFNV 308 (406)
Q Consensus 257 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~----------------------------~~~~~~~~i~~~~~ 308 (406)
++.|++++.+ +++++.|..|++|++...+... +...|...|.|+.|
T Consensus 186 SvD~~~~gd~------i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw 259 (385)
T KOG1034|consen 186 SVDFSLDGDR------IASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW 259 (385)
T ss_pred EEEEcCCCCe------eeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH
Confidence 9999999985 6788999999999998422100 11223444455555
Q ss_pred cCCCCEEEEEeCCCcEEEEECC-Cce-------------EEEEeecccccceEEEEE--cCCCCeEEEEECCCcEEEEEe
Q 015490 309 SADGKLLAVGTASGDISIIDSS-SLQ-------------VRTAVKKAHLGIVTALAF--SYDSRALVSASMDSSVRVTVI 372 (406)
Q Consensus 309 sp~~~~l~~~~~dg~i~i~d~~-~~~-------------~~~~~~~~~~~~v~~~~~--sp~~~~l~s~s~dg~i~iw~~ 372 (406)
- |+++++-+-++.|..|... -.+ .+..+. .....|+-+.| .|-+++||.|...|.|.+||+
T Consensus 260 ~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~-~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL 336 (385)
T KOG1034|consen 260 F--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD-YPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDL 336 (385)
T ss_pred H--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEec-cCccceEEEEEeecHHHHHHhhccCCCcEEEEEC
Confidence 4 6788888888999999872 111 122222 23445565554 555889999999999999999
Q ss_pred cCCcC
Q 015490 373 EDKKK 377 (406)
Q Consensus 373 ~~~~~ 377 (406)
+..++
T Consensus 337 ~~~ep 341 (385)
T KOG1034|consen 337 DNNEP 341 (385)
T ss_pred CCCCC
Confidence 88765
No 174
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.80 E-value=1.9e-16 Score=147.71 Aligned_cols=250 Identities=29% Similarity=0.423 Sum_probs=198.2
Q ss_pred EEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccc-c-CcEEEEEE-CCCCC-EE
Q 015490 108 ELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN-V-GQQLALTF-DSEGT-IF 182 (406)
Q Consensus 108 ~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~v~~~~~-s~~g~-~l 182 (406)
....|...+.++.+.+.+..++.++ ++.+.+|...... .....+.. + ..+..+.+ ++++. .+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-------------KLIKSLEGLHDSSVSKLALSSPDGNSIL 126 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-------------eeEEEEeccCCCceeeEEEECCCcceEE
Confidence 5678999999999999999988886 8888887776432 01111222 1 35666666 88887 55
Q ss_pred EEeeC-CCeEEEEeCCC-cceEeeeeccCCceeEEEEccCCCEEEEEeC-CCCEEEEEcCCCeeeeecccCCcceEEEEE
Q 015490 183 AAGSE-NGNLRVFKWPS-LEIILNESEAHASVKDLSFSPDGKFLVSLGN-RGPGRVWDLASSAVATPLAKENDELFASCR 259 (406)
Q Consensus 183 ~~~~~-dg~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 259 (406)
+..+. |+.+.+|+... ......+..|...|..++|+|+++.+++++. |+.+++|++..+.....+.. +...+.+++
T Consensus 127 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~ 205 (466)
T COG2319 127 LASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG-HTDPVSSLA 205 (466)
T ss_pred eccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeecc-CCCceEEEE
Confidence 55444 99999999987 7777788888889999999999998888886 99999999998777777765 456788999
Q ss_pred EEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEE-EeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceE-EEE
Q 015490 260 FSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIR-TKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQV-RTA 337 (406)
Q Consensus 260 ~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~-~~~ 337 (406)
|+|++.. ++++.+.++.+.+||...+.... .+..|.... ...|+|++.++++++.|+.+++|++..... ...
T Consensus 206 ~~~~~~~-----~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 279 (466)
T COG2319 206 FSPDGGL-----LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT 279 (466)
T ss_pred EcCCcce-----EEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEE
Confidence 9988862 34446889999999998777777 577776654 338999998999999999999999987664 444
Q ss_pred eecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCC
Q 015490 338 VKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKS 378 (406)
Q Consensus 338 ~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~ 378 (406)
+ ..|...+.++.|.|++..+++++.|+.+++|++.+....
T Consensus 280 ~-~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 319 (466)
T COG2319 280 L-SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLL 319 (466)
T ss_pred E-ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceE
Confidence 4 478899999999998888988999999999988876643
No 175
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=4.6e-17 Score=134.76 Aligned_cols=233 Identities=13% Similarity=0.141 Sum_probs=167.1
Q ss_pred CCCceEEEEc-------cCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc---CcEEEEEECCCCCE
Q 015490 113 SDLPYRMAIH-------PHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV---GQQLALTFDSEGTI 181 (406)
Q Consensus 113 ~~~v~~~~~s-------p~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~g~~ 181 (406)
...|+..+|- |+..++++++ +.-+.+|+. -+++....+ +.+.|. ....+++|+|||.+
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wda--ftG~lraSy---------~~ydh~de~taAhsL~Fs~DGeq 172 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDA--FTGKLRASY---------RAYDHQDEYTAAHSLQFSPDGEQ 172 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeec--cccccccch---------hhhhhHHhhhhheeEEecCCCCe
Confidence 4567777775 5666666665 777777654 334322221 122232 34578999999999
Q ss_pred EEEeeCCCeEEEEeC-CCcceE--eeee-----ccCCceeEEEEccC-CCEEEEEeCCCCEEEEEcCCCeeeeecccCCc
Q 015490 182 FAAGSENGNLRVFKW-PSLEII--LNES-----EAHASVKDLSFSPD-GKFLVSLGNRGPGRVWDLASSAVATPLAKEND 252 (406)
Q Consensus 182 l~~~~~dg~i~vwd~-~~~~~~--~~~~-----~~~~~i~~~~~s~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~ 252 (406)
|++| ....|++||+ +.|... .... +..+.|.+++|+|- .+.+++++...++-||.-..+.++..+-+ +.
T Consensus 173 lfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llgg-h~ 250 (406)
T KOG2919|consen 173 LFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGG-HG 250 (406)
T ss_pred Eeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecc-cC
Confidence 9876 4579999999 555421 1111 22347899999995 45899999999999998888888877764 55
Q ss_pred ceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc-eEEEEeeecCC---CeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 015490 253 ELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW-KRIRTKQVVRE---PVSSFNVSADGKLLAVGTASGDISIID 328 (406)
Q Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~---~i~~~~~sp~~~~l~~~~~dg~i~i~d 328 (406)
..|+.+.|.++|++ +...+..+..|..||++.. .++..+..|.. .-.-....|++++|++|+.||.|++||
T Consensus 251 gGvThL~~~edGn~-----lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwd 325 (406)
T KOG2919|consen 251 GGVTHLQWCEDGNK-----LFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWD 325 (406)
T ss_pred CCeeeEEeccCcCe-----ecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEe
Confidence 67999999999997 4455567889999999864 34555555533 222355578999999999999999999
Q ss_pred CCC-ceEEEEeecccccceEEEEEcCCCCeEEEEECC
Q 015490 329 SSS-LQVRTAVKKAHLGIVTALAFSYDSRALVSASMD 364 (406)
Q Consensus 329 ~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d 364 (406)
+++ +..+..+. .|...++.++++|-=..+++++..
T Consensus 326 lk~~gn~~sv~~-~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 326 LKDLGNEVSVTG-NYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cCCCCCcccccc-cccccccceecCcccceeeeccCc
Confidence 998 66566664 789999999999987777777643
No 176
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=2.1e-17 Score=153.64 Aligned_cols=234 Identities=16% Similarity=0.174 Sum_probs=157.0
Q ss_pred EEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeecccc
Q 015490 89 VLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN 166 (406)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (406)
..++.+|.+.. ....+..|...+.+.+|+|||+.|+.++ ++.-.||.|+..+++.. .+..+.
T Consensus 184 ~~i~i~d~dg~-----~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~----------~l~~~~- 247 (429)
T PRK01742 184 YEVRVADYDGF-----NQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK----------VVASFR- 247 (429)
T ss_pred EEEEEECCCCC-----CceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE----------EEecCC-
Confidence 45666665542 2355677888999999999999998876 33456777776543211 111122
Q ss_pred cCcEEEEEECCCCCEEEEee-CCCeEEEE--eCCCcceEeeeeccCCceeEEEEccCCCEEEEEe-CCCCEEEEEcCCC-
Q 015490 167 VGQQLALTFDSEGTIFAAGS-ENGNLRVF--KWPSLEIILNESEAHASVKDLSFSPDGKFLVSLG-NRGPGRVWDLASS- 241 (406)
Q Consensus 167 ~~~v~~~~~s~~g~~l~~~~-~dg~i~vw--d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s-~d~~i~iwd~~~~- 241 (406)
+....++|+|||+.|+.++ .+|.+.|| |+.+++. ..+..+...+..+.|+|||+.|+.++ .++...||++...
T Consensus 248 -g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~ 325 (429)
T PRK01742 248 -GHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG 325 (429)
T ss_pred -CccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 2234689999999888764 67765555 6655554 34555555788999999999877665 5778888876532
Q ss_pred eeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCC
Q 015490 242 AVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAS 321 (406)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d 321 (406)
.....+ .+.. ....|+|+++. ++..+ .+ .+.+||+.+++....... ....++.|+|||++|+.++.+
T Consensus 326 ~~~~~l-~~~~---~~~~~SpDG~~-----ia~~~-~~-~i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~ 392 (429)
T PRK01742 326 GGASLV-GGRG---YSAQISADGKT-----LVMIN-GD-NVVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQ 392 (429)
T ss_pred CCeEEe-cCCC---CCccCCCCCCE-----EEEEc-CC-CEEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcC
Confidence 222222 2222 35789999985 32332 23 466699988765432222 234578899999999999999
Q ss_pred CcEEEEEC--CCceEEEEeecccccceEEEEEcCC
Q 015490 322 GDISIIDS--SSLQVRTAVKKAHLGIVTALAFSYD 354 (406)
Q Consensus 322 g~i~i~d~--~~~~~~~~~~~~~~~~v~~~~~sp~ 354 (406)
+.+.+|++ .+++....+. .|.+.+..++|+|-
T Consensus 393 g~~~~l~~~~~~G~~~~~l~-~~~g~~~~p~wsp~ 426 (429)
T PRK01742 393 GLGKVLQLVSADGRFKARLP-GSDGQVKFPAWSPY 426 (429)
T ss_pred CCceEEEEEECCCCceEEcc-CCCCCCCCcccCCC
Confidence 88887775 3577777775 78888999999984
No 177
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=1.7e-17 Score=147.70 Aligned_cols=199 Identities=15% Similarity=0.215 Sum_probs=163.2
Q ss_pred cccccCcEEEEEECCCCCEEEEeeCC---CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcC
Q 015490 163 QLENVGQQLALTFDSEGTIFAAGSEN---GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLA 239 (406)
Q Consensus 163 ~~~~~~~v~~~~~s~~g~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~ 239 (406)
.+.+...|..+.|+..|.||++...+ ..|.|+++........+....+.|.++.|+|...+|++++.. .|+|||+.
T Consensus 517 ~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~ 595 (733)
T KOG0650|consen 517 VIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLS 595 (733)
T ss_pred EEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc-ceEEEehh
Confidence 34566789999999999999997553 579999998777666666677789999999999999888854 89999998
Q ss_pred CCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc-eEEEEeeecCCCeEEEEEcCCCCEEEEE
Q 015490 240 SSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW-KRIRTKQVVREPVSSFNVSADGKLLAVG 318 (406)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~ 318 (406)
....++.+... ...+..++.+|.|.+ +..++.++.+..+|+.-. ++.+++..|...+++++|++.-.++++|
T Consensus 596 kqelvKkL~tg-~kwiS~msihp~GDn------li~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~ 668 (733)
T KOG0650|consen 596 KQELVKKLLTG-SKWISSMSIHPNGDN------LILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASG 668 (733)
T ss_pred HHHHHHHHhcC-CeeeeeeeecCCCCe------EEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeee
Confidence 87777776643 456889999999986 345578999999998643 6788889999999999999999999999
Q ss_pred eCCCcEEEEECC------C---ceEEEEeecccccc----eEEEEEcCCCCeEEEEECCCcEEEE
Q 015490 319 TASGDISIIDSS------S---LQVRTAVKKAHLGI----VTALAFSYDSRALVSASMDSSVRVT 370 (406)
Q Consensus 319 ~~dg~i~i~d~~------~---~~~~~~~~~~~~~~----v~~~~~sp~~~~l~s~s~dg~i~iw 370 (406)
+.||++.||--. . --++..+. +|... |..+.|+|...+|++++.||+|++|
T Consensus 669 sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~-gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 669 SDDGTVIVFHGMVYNDLLQNPLIVPLKRLR-GHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cCCCcEEEEeeeeehhhhcCCceEeeeecc-CceeecccceEeecccCCCceEEecCCCceEEee
Confidence 999999988532 1 12344453 77655 8899999999999999999999998
No 178
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=9.5e-18 Score=142.17 Aligned_cols=261 Identities=13% Similarity=0.116 Sum_probs=188.8
Q ss_pred ceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccc--cCcEEEEEECCCCCE
Q 015490 105 PVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN--VGQQLALTFDSEGTI 181 (406)
Q Consensus 105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~g~~ 181 (406)
....+.+|.+.|.++.|+.++++|++|+ |..+++|..+..--.. ..++++...+ ...|.|++|....++
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k--------~~KPI~~~~~~H~SNIF~L~F~~~N~~ 119 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK--------TPKPIGVMEHPHRSNIFSLEFDLENRF 119 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhc--------CCCCceeccCccccceEEEEEccCCee
Confidence 3445789999999999999999999998 7788888776321111 2233333333 378999999999999
Q ss_pred EEEeeCCCeEEEEeCCCcceEeeeeccC--CceeEEEEccCCCEEEEEeCCCCEEEEEcCCCe-eee-ecccCCcceEEE
Q 015490 182 FAAGSENGNLRVFKWPSLEIILNESEAH--ASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSA-VAT-PLAKENDELFAS 257 (406)
Q Consensus 182 l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~-~~~-~~~~~~~~~~~~ 257 (406)
+++|..+++|...|+++.+.+....... +.|+.+..+|..+.|++.+.++.|.+||.+... ... .+..........
T Consensus 120 ~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t 199 (609)
T KOG4227|consen 120 LYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYT 199 (609)
T ss_pred EecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCcccee
Confidence 9999999999999999988876554332 389999999999999999999999999998765 222 122234455778
Q ss_pred EEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceE-EEE------eeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 015490 258 CRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR-IRT------KQVVREPVSSFNVSADGKLLAVGTASGDISIIDSS 330 (406)
Q Consensus 258 ~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~-~~~------~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~ 330 (406)
+.|+|.... ++++.+..+.+-+||.+.... +.. +........++.|+|+|+.+.+--....-.+||+.
T Consensus 200 ~~F~P~~P~-----Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~ 274 (609)
T KOG4227|consen 200 AEFHPETPA-----LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFI 274 (609)
T ss_pred eeecCCCce-----eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeee
Confidence 999999886 556667788899999986432 111 11111234678899999988776555556678887
Q ss_pred CceE-EEEeeccccc-------ceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490 331 SLQV-RTAVKKAHLG-------IVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL 381 (406)
Q Consensus 331 ~~~~-~~~~~~~~~~-------~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~ 381 (406)
+.++ +..+ .|+. .+.+++|..| ..+++|+.+-.|++|.+......+.|
T Consensus 275 S~R~~V~k~--D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~ 330 (609)
T KOG4227|consen 275 SQRCFVLKS--DHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGF 330 (609)
T ss_pred cccceeEec--cCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCc
Confidence 6443 3333 3432 3667888765 44999999999999999765554443
No 179
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.78 E-value=2.4e-17 Score=147.88 Aligned_cols=246 Identities=15% Similarity=0.207 Sum_probs=166.2
Q ss_pred EEEcc--CCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEE
Q 015490 119 MAIHP--HGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVF 194 (406)
Q Consensus 119 ~~~sp--~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vw 194 (406)
..|++ +.+++++.+ ++.+.+++......+ . ...+....+.|...|..+.|-|....|++++.|.++++|
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr------~-ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~W 127 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFR------L-EERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPW 127 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcc------h-hhhhhcccccccceeEeeccCCCceeEEEccCCceeeee
Confidence 55654 444555544 777777665433222 0 011223344566889999999966789999999999999
Q ss_pred eCCCcceEee--eeccCCceeEEEEccCCC-EEEEEeCCCCEEEEEcCCCe--------------------eeeeccc--
Q 015490 195 KWPSLEIILN--ESEAHASVKDLSFSPDGK-FLVSLGNRGPGRVWDLASSA--------------------VATPLAK-- 249 (406)
Q Consensus 195 d~~~~~~~~~--~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~~--------------------~~~~~~~-- 249 (406)
|+.+.++... +.+|...|.+++|.|+.. .|++|+.||.|.|||++-.. +...+..
T Consensus 128 dvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~ 207 (720)
T KOG0321|consen 128 DVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRI 207 (720)
T ss_pred eeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccc
Confidence 9999888766 889999999999999655 78899999999999986432 0000000
Q ss_pred ----CCcceEEE---EEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEe--------eec---CCCeEEEEEcCC
Q 015490 250 ----ENDELFAS---CRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTK--------QVV---REPVSSFNVSAD 311 (406)
Q Consensus 250 ----~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~--------~~~---~~~i~~~~~sp~ 311 (406)
.+...+.+ +.+..|... ++..+..|+.|++||++........ ..+ ...+.++.....
T Consensus 208 ~k~kA~s~ti~ssvTvv~fkDe~t-----laSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss 282 (720)
T KOG0321|consen 208 RKWKAASNTIFSSVTVVLFKDEST-----LASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS 282 (720)
T ss_pred cccccccCceeeeeEEEEEeccce-----eeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC
Confidence 01112222 344455543 4444456999999999875433221 112 235678888888
Q ss_pred CCEEEEEeCCCcEEEEECCCce--EEEEeeccccc-ce-EEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490 312 GKLLAVGTASGDISIIDSSSLQ--VRTAVKKAHLG-IV-TALAFSYDSRALVSASMDSSVRVTVIEDKKK 377 (406)
Q Consensus 312 ~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~-~v-~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~ 377 (406)
|.+|++.+.|+.|++||+.+.. ++..+. ++.. .. ..-..+||+.++++|+.|...++|.+.+.+.
T Consensus 283 Gt~L~AsCtD~sIy~ynm~s~s~sP~~~~s-g~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~ 351 (720)
T KOG0321|consen 283 GTYLFASCTDNSIYFYNMRSLSISPVAEFS-GKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA 351 (720)
T ss_pred CCeEEEEecCCcEEEEeccccCcCchhhcc-CcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC
Confidence 9999999999999999998643 233332 2211 11 1234589999999999999999999998765
No 180
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.78 E-value=2.3e-19 Score=165.07 Aligned_cols=263 Identities=17% Similarity=0.227 Sum_probs=196.4
Q ss_pred cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCE
Q 015490 104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTI 181 (406)
Q Consensus 104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~ 181 (406)
+.+..+.+|...|+|+.|...|.++++|+ |.-++||..+ +..++....+| +.++.++.+.+..+
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~e--------------t~~~lAs~rGhs~ditdlavs~~n~~ 246 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSME--------------TARCLASCRGHSGDITDLAVSSNNTM 246 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeecc--------------chhhhccCCCCccccchhccchhhhh
Confidence 45667889999999999999999999998 7778887744 33444445555 88999999999999
Q ss_pred EEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee---ecccCCcceEEEE
Q 015490 182 FAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT---PLAKENDELFASC 258 (406)
Q Consensus 182 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~~ 258 (406)
+++++.|..|++|.+.++..+..+.+|.+.|++++|+|-. +.+.||++++||.+-.-... .+....+..+.++
T Consensus 247 iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~ 322 (1113)
T KOG0644|consen 247 IAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSI 322 (1113)
T ss_pred hhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeee
Confidence 9999999999999999999999999999999999999954 78899999999987111000 0000011111111
Q ss_pred EEEcCCCC----------------------ceEEE---------EEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEE
Q 015490 259 RFSPLNNE----------------------DYVLY---------IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFN 307 (406)
Q Consensus 259 ~~~~~~~~----------------------~~~l~---------~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~ 307 (406)
.|...+.. ..+.| +..+...+..+.+|++.++...+.+.+|...+..+.
T Consensus 323 ~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd 402 (1113)
T KOG0644|consen 323 LFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLD 402 (1113)
T ss_pred eccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeee
Confidence 11110000 00111 122233456788999999999999999999999999
Q ss_pred EcCCC-CEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCchHHH
Q 015490 308 VSADG-KLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLNLWI 385 (406)
Q Consensus 308 ~sp~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~ 385 (406)
++|-+ +...+++.||...|||+-.+.+++....+| +.+....||+||..++....-|.++|.....++.....++-+
T Consensus 403 ~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k~ak~dq 480 (1113)
T KOG0644|consen 403 VHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQKKAKYDQ 480 (1113)
T ss_pred ecCCCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEEeccCCCccccccccce
Confidence 99955 455578889999999999998888876554 567778999999999877777899999887777666555443
No 181
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.78 E-value=4e-16 Score=129.08 Aligned_cols=240 Identities=13% Similarity=0.213 Sum_probs=169.8
Q ss_pred ceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEE-EeeC------C
Q 015490 116 PYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFA-AGSE------N 188 (406)
Q Consensus 116 v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~~------d 188 (406)
..+++|+.|...++++.+...+||+.+.-.....+.. ....-.+..+-| ..++|| +|+. -
T Consensus 8 ~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~-----------~~~G~~~veMLf--R~N~laLVGGg~~pky~p 74 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQF-----------IDGGFKIVEMLF--RSNYLALVGGGSRPKYPP 74 (346)
T ss_pred eeEEEEccCCceEEEEecCceEEEecCchhhhhhhcc-----------ccCchhhhhHhh--hhceEEEecCCCCCCCCC
Confidence 4569999999999999999999999886321111110 001111122222 223443 3332 2
Q ss_pred CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcC-CCeeeeecccCCcceEEEEEEEcCCCCc
Q 015490 189 GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLA-SSAVATPLAKENDELFASCRFSPLNNED 267 (406)
Q Consensus 189 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (406)
..|.|||=...+++..+ .-..+|.++.+.++ +|++.- ++.|+||... +.+.++.+..... +-.-++..|....
T Consensus 75 NkviIWDD~k~~~i~el-~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~N-PkGlC~~~~~~~k- 148 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIEL-SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSN-PKGLCSLCPTSNK- 148 (346)
T ss_pred ceEEEEecccCcEEEEE-EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccC-CCceEeecCCCCc-
Confidence 57999995445555444 44568999999876 455554 5689999987 4455555443221 1114556665553
Q ss_pred eEEEEEEEcCCCcEEEEEeCCCceE--EEEeeecCCCeEEEEEcCCCCEEEEEeCCCc-EEEEECCCceEEEEeeccc-c
Q 015490 268 YVLYIAAITDRGASIVTWNTTTWKR--IRTKQVVREPVSSFNVSADGKLLAVGTASGD-ISIIDSSSLQVRTAVKKAH-L 343 (406)
Q Consensus 268 ~~l~~~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~-~ 343 (406)
.+++.-+..-|.|.+.|+...+. ...+..|...|.|++.+-+|..+|+++..|+ |||||..++..+..+.++- .
T Consensus 149 --~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~ 226 (346)
T KOG2111|consen 149 --SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDR 226 (346)
T ss_pred --eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCch
Confidence 34566677789999999986554 4778899999999999999999999999998 7999999999999997653 3
Q ss_pred cceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490 344 GIVTALAFSYDSRALVSASMDSSVRVTVIEDKK 376 (406)
Q Consensus 344 ~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~ 376 (406)
..|.+++|||++.+|+++|..|+++|+.++...
T Consensus 227 A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 227 ADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred heEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 569999999999999999999999999998744
No 182
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.77 E-value=1.2e-16 Score=136.21 Aligned_cols=254 Identities=17% Similarity=0.240 Sum_probs=170.1
Q ss_pred CCCCceEEEEccCCC-eEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEeeCC
Q 015490 112 DSDLPYRMAIHPHGD-GIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAGSEN 188 (406)
Q Consensus 112 h~~~v~~~~~sp~~~-~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~d 188 (406)
...+|..+.|.++.. .+++++ |..++||.++......-. ...+.+..+. |+..|+++.|+|+|.+||+|+.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~-----~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~ 86 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD-----MKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDG 86 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc-----eeEEEeecccCCcceeEEEEEcCCcCeeeecCCC
Confidence 346789999999877 788876 999999998765433210 0122233343 45889999999999999999999
Q ss_pred CeEEEEeCC--------C--------cceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCc
Q 015490 189 GNLRVFKWP--------S--------LEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKEND 252 (406)
Q Consensus 189 g~i~vwd~~--------~--------~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~ 252 (406)
|.|.+|... + ......+.+|...|..++|+|++.++++++.|+.+++||+..|.....+..| .
T Consensus 87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh-~ 165 (434)
T KOG1009|consen 87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH-E 165 (434)
T ss_pred ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc-c
Confidence 999999865 2 1223445567779999999999999999999999999999999988877654 5
Q ss_pred ceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEee-------------------ecC----CCeEEEEEc
Q 015490 253 ELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQ-------------------VVR----EPVSSFNVS 309 (406)
Q Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~-------------------~~~----~~i~~~~~s 309 (406)
..+..++|.|.+++ +++-+.|...+.+.+...+.+.... .|. .-...++|+
T Consensus 166 ~yvqgvawDpl~qy------v~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfT 239 (434)
T KOG1009|consen 166 HYVQGVAWDPLNQY------VASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFT 239 (434)
T ss_pred cccceeecchhhhh------hhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccC
Confidence 56788999998885 3333445545555444322211111 011 124567899
Q ss_pred CCCCEEEEEeC----CCc-----EEEEECCC-ceEEEEeecccccceEEEEEcC------------------CCCeEEEE
Q 015490 310 ADGKLLAVGTA----SGD-----ISIIDSSS-LQVRTAVKKAHLGIVTALAFSY------------------DSRALVSA 361 (406)
Q Consensus 310 p~~~~l~~~~~----dg~-----i~i~d~~~-~~~~~~~~~~~~~~v~~~~~sp------------------~~~~l~s~ 361 (406)
|||.++++... .+. .++|+-.. .++...+. ....++..+.|+| -+-.++.+
T Consensus 240 PdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp-~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiA 318 (434)
T KOG1009|consen 240 PDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLP-SPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIA 318 (434)
T ss_pred CCCcEEEcccceeeeCCceeeceeEeeccccccCceeecC-CCCcceEEEEeeeeEEEeccccccccccccccceEEEEe
Confidence 99999987543 232 35555443 23333332 3444455555554 12234444
Q ss_pred ECCCcEEEEEecCCcCCC
Q 015490 362 SMDSSVRVTVIEDKKKSG 379 (406)
Q Consensus 362 s~dg~i~iw~~~~~~~~~ 379 (406)
+ ...|+|||.++.+.+.
T Consensus 319 t-~~svyvydtq~~~P~~ 335 (434)
T KOG1009|consen 319 T-KNSVYVYDTQTLEPLA 335 (434)
T ss_pred e-cceEEEeccccccceE
Confidence 4 4579999999876643
No 183
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.77 E-value=6.5e-16 Score=143.39 Aligned_cols=238 Identities=14% Similarity=0.124 Sum_probs=155.8
Q ss_pred EEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeecccc
Q 015490 89 VLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN 166 (406)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (406)
..++.+|.+.. ....+..+...+.+.+|+|||+.|+..+ .+...||.++..+++... +.. .
T Consensus 179 ~~l~~~d~dg~-----~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~----------l~~--~ 241 (429)
T PRK03629 179 YELRVSDYDGY-----NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ----------VAS--F 241 (429)
T ss_pred eeEEEEcCCCC-----CCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE----------ccC--C
Confidence 35566665442 2344556778899999999999998764 344567777765443211 111 1
Q ss_pred cCcEEEEEECCCCCEEEEe-eCCC--eEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCC-CC--EEEEEcCC
Q 015490 167 VGQQLALTFDSEGTIFAAG-SENG--NLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNR-GP--GRVWDLAS 240 (406)
Q Consensus 167 ~~~v~~~~~s~~g~~l~~~-~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d-~~--i~iwd~~~ 240 (406)
.+.+..+.|||||+.|+.. +.+| .|++||+++++.. .+..+...+....|+|||+.|+..+.+ +. |+++|+.+
T Consensus 242 ~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~ 320 (429)
T PRK03629 242 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING 320 (429)
T ss_pred CCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC
Confidence 2234468999999988765 4344 5999999887654 344444567889999999998877754 44 45557766
Q ss_pred CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC
Q 015490 241 SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA 320 (406)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~ 320 (406)
++... +... ........|+|+++. ++++........|++||+.+++.. .+... .......|+|||++|+.++.
T Consensus 321 g~~~~-lt~~-~~~~~~~~~SpDG~~---Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~ 393 (429)
T PRK03629 321 GAPQR-ITWE-GSQNQDADVSSDGKF---MVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSS 393 (429)
T ss_pred CCeEE-eecC-CCCccCEEECCCCCE---EEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEc
Confidence 54432 2221 223456889999985 222222233457899999887643 33322 23457889999999999888
Q ss_pred CCc---EEEEECCCceEEEEeecccccceEEEEEcC
Q 015490 321 SGD---ISIIDSSSLQVRTAVKKAHLGIVTALAFSY 353 (406)
Q Consensus 321 dg~---i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp 353 (406)
++. +.++++. +.....+. .|.+.+...+|+|
T Consensus 394 ~~~~~~l~~~~~~-G~~~~~l~-~~~~~~~~p~Wsp 427 (429)
T PRK03629 394 QGMGSVLNLVSTD-GRFKARLP-ATDGQVKFPAWSP 427 (429)
T ss_pred CCCceEEEEEECC-CCCeEECc-cCCCCcCCcccCC
Confidence 764 6777874 55555664 6888899999987
No 184
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.76 E-value=2.9e-18 Score=148.22 Aligned_cols=247 Identities=16% Similarity=0.216 Sum_probs=196.2
Q ss_pred EecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC
Q 015490 109 LRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE 187 (406)
Q Consensus 109 ~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 187 (406)
+.-.....+.+.++.+|++++.++ -|.+..++|.. ......+.....|.++.|-.+.+++|++-
T Consensus 125 L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t--------------~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQ- 189 (545)
T KOG1272|consen 125 LSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVT--------------KKLHFEINVMETVRDVTFLHNEQFFAVAQ- 189 (545)
T ss_pred ccccccCCeeeeecCCccEEEecCCccceeeeeccc--------------ceeeeeeehhhhhhhhhhhcchHHHHhhh-
Confidence 333355678999999999999998 78888888873 33444445557788999999988888864
Q ss_pred CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCc
Q 015490 188 NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNED 267 (406)
Q Consensus 188 dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (406)
...++||| ..|..+..+..+ ..|..+.|.|.--+|++++..|.++.-|+.+|+.+..+....+ .+..+.-+|.+.
T Consensus 190 K~y~yvYD-~~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G-~~~vm~qNP~Na-- 264 (545)
T KOG1272|consen 190 KKYVYVYD-NNGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAG-RTDVMKQNPYNA-- 264 (545)
T ss_pred hceEEEec-CCCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCC-ccchhhcCCccc--
Confidence 56899999 667777776554 4689999999988899999999999999999999988876543 456677777765
Q ss_pred eEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceE
Q 015490 268 YVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVT 347 (406)
Q Consensus 268 ~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 347 (406)
++..|..+|+|.+|...+.+++..+.+|.++|.++++.++|+|+++.+.|..++|||+++...+.++.. .-+..
T Consensus 265 ----Vih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--p~~a~ 338 (545)
T KOG1272|consen 265 ----VIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT--PHPAS 338 (545)
T ss_pred ----eEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec--CCCcc
Confidence 677889999999999999999999999999999999999999999999999999999999887777652 34567
Q ss_pred EEEEcCCCCeEEEEECCCcEEEEE-ecCCcCCCCchH
Q 015490 348 ALAFSYDSRALVSASMDSSVRVTV-IEDKKKSGGLNL 383 (406)
Q Consensus 348 ~~~~sp~~~~l~s~s~dg~i~iw~-~~~~~~~~~~~~ 383 (406)
.+++|..| +++++....|.||. .-.+..-...|+
T Consensus 339 ~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pY 373 (545)
T KOG1272|consen 339 NLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPY 373 (545)
T ss_pred cccccccc--ceeeecCCeeeeehhhhcCCCCCCcch
Confidence 88888655 44455666799994 434333344454
No 185
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.76 E-value=6.9e-16 Score=143.03 Aligned_cols=280 Identities=11% Similarity=0.112 Sum_probs=188.5
Q ss_pred EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeeccccc
Q 015490 90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV 167 (406)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (406)
.++.|+.... . .+...+ .-...|+|+.|+|....+++|+ +|.+.+|+. ..+..... ..-......|.
T Consensus 223 ~~~vW~~~~p-~--~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~--~~~~~~~~-----s~ls~~~~sh~ 291 (555)
T KOG1587|consen 223 VLLVWSLKNP-N--TPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDL--RKGSDTPP-----SGLSALEVSHS 291 (555)
T ss_pred eEEEEecCCC-C--CceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEc--cCCCCCCC-----cccccccccCC
Confidence 4566666553 1 233333 3467899999999988888877 555555544 43332110 22223344566
Q ss_pred CcEEEEEECCCC--CEEEEeeCCCeEEEEeCCCcceEe-----eeec-------cCCceeEEEEcc-CCCEEEEEeCCCC
Q 015490 168 GQQLALTFDSEG--TIFAAGSENGNLRVFKWPSLEIIL-----NESE-------AHASVKDLSFSP-DGKFLVSLGNRGP 232 (406)
Q Consensus 168 ~~v~~~~~s~~g--~~l~~~~~dg~i~vwd~~~~~~~~-----~~~~-------~~~~i~~~~~s~-~~~~l~s~s~d~~ 232 (406)
.+++.+.|..+. .-|++++.||.|..|+++.-.... .... ....+++++|.+ +-..+++|+.+|.
T Consensus 292 ~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~ 371 (555)
T KOG1587|consen 292 EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGK 371 (555)
T ss_pred cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcE
Confidence 889999997754 448999999999999986433211 1111 112788999987 4457889999998
Q ss_pred EEEEEcCCCeeee-------ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC-CceEEEEeeecCCCeE
Q 015490 233 GRVWDLASSAVAT-------PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT-TWKRIRTKQVVREPVS 304 (406)
Q Consensus 233 i~iwd~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~i~ 304 (406)
|.--+-...+... .....+...++++.++|-+.. +++++ + |-++++|... ...++..+..+...++
T Consensus 372 v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k----~fls~-g-DW~vriWs~~~~~~Pl~~~~~~~~~v~ 445 (555)
T KOG1587|consen 372 VYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPK----NFLSV-G-DWTVRIWSEDVIASPLLSLDSSPDYVT 445 (555)
T ss_pred EEEEeccCCcccccccccccccccccCcceEeeecCCCccc----eeeee-c-cceeEeccccCCCCcchhhhhccceee
Confidence 8774332222111 111234567899999999886 23333 3 8999999987 6677777777777799
Q ss_pred EEEEcCCC-CEEEEEeCCCcEEEEECCC--ceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490 305 SFNVSADG-KLLAVGTASGDISIIDSSS--LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL 381 (406)
Q Consensus 305 ~~~~sp~~-~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~ 381 (406)
+++|||.. ..++++..||.+.+||+.. ..++.... .+....+.+.|+++|+.|+.|...|++++|++...-.....
T Consensus 446 ~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~-~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~l~~~~~ 524 (555)
T KOG1587|consen 446 DVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQK-VCSPALTRVRWSPNGKLLAVGDANGTTHILKLSESLAVPSP 524 (555)
T ss_pred eeEEcCcCceEEEEEcCCCceehhhhhccccCCccccc-ccccccceeecCCCCcEEEEecCCCcEEEEEcCchhhccCc
Confidence 99999965 5677788899999999964 34444443 34566778899999999999999999999999765444444
Q ss_pred hHHHHH
Q 015490 382 NLWIII 387 (406)
Q Consensus 382 ~~~~~~ 387 (406)
+-|..+
T Consensus 525 ~e~~~~ 530 (555)
T KOG1587|consen 525 NEKALF 530 (555)
T ss_pred chHHHH
Confidence 444433
No 186
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.76 E-value=2.4e-14 Score=133.45 Aligned_cols=252 Identities=25% Similarity=0.416 Sum_probs=186.5
Q ss_pred ceeEEecCC-CCceEEEE-ccCCC-eEEEEe--cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCC
Q 015490 105 PVAELRTDS-DLPYRMAI-HPHGD-GIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEG 179 (406)
Q Consensus 105 ~~~~~~~h~-~~v~~~~~-sp~~~-~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 179 (406)
....+.++. ..+..+.+ ++++. .++..+ ++.+.+|+.... . ........+...+..+.|+|++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~-----------~~~~~~~~~~~~v~~~~~~~~~ 167 (466)
T COG2319 100 LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTP-G-----------KLIRTLEGHSESVTSLAFSPDG 167 (466)
T ss_pred eEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCC-C-----------eEEEEEecCcccEEEEEECCCC
Confidence 455555544 37777777 88887 334322 666777666530 1 1111122355788899999999
Q ss_pred CEEEEeeC-CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCC-EEEEEeCCCCEEEEEcCCCeeee-ecccCCcceEE
Q 015490 180 TIFAAGSE-NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGK-FLVSLGNRGPGRVWDLASSAVAT-PLAKENDELFA 256 (406)
Q Consensus 180 ~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~~~~~-~~~~~~~~~~~ 256 (406)
..+++++. |+.+++|++..+.....+..|...|.+++|+|++. .+++++.|+.+++||...+.... .+..+....
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-- 245 (466)
T COG2319 168 KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-- 245 (466)
T ss_pred CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce--
Confidence 98888885 99999999998888888888888999999999998 55555899999999998777777 455544432
Q ss_pred EEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceE-EEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEE
Q 015490 257 SCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR-IRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVR 335 (406)
Q Consensus 257 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~ 335 (406)
...|++++. .++.++.++.+++||.+.... ...+..|...+.++.|+|++..+++++.|+.+.+||..+....
T Consensus 246 ~~~~~~~~~------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 319 (466)
T COG2319 246 VSSFSPDGS------LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLL 319 (466)
T ss_pred eEeECCCCC------EEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceE
Confidence 227999884 234778899999999987664 4444567789999999998888888888988999999887766
Q ss_pred EEee-cccccceEEEEEcCCCCeEEEE-ECCCcEEEEEecCCc
Q 015490 336 TAVK-KAHLGIVTALAFSYDSRALVSA-SMDSSVRVTVIEDKK 376 (406)
Q Consensus 336 ~~~~-~~~~~~v~~~~~sp~~~~l~s~-s~dg~i~iw~~~~~~ 376 (406)
.... ..|...+..+.|.+++..++.+ ..|+.+.+|++....
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 320 SSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 5553 3677789999994332455555 688999999998876
No 187
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=8.9e-16 Score=142.88 Aligned_cols=250 Identities=14% Similarity=0.137 Sum_probs=165.6
Q ss_pred EecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC
Q 015490 109 LRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE 187 (406)
Q Consensus 109 ~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 187 (406)
-..|+..++|.++||++++++++. +|.+.+| ........ ...+....-|+..|.+++|+++|.+|++|+.
T Consensus 201 ~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw--~d~~~~~~-------~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~ 271 (792)
T KOG1963|consen 201 TVHHTFNITCVALSPNERYLAAGDSDGRILVW--RDFGSSDD-------SETCTLLHWHHDEVNSLSFSSDGAYLLSGGR 271 (792)
T ss_pred hhhhcccceeEEeccccceEEEeccCCcEEEE--eccccccc-------cccceEEEecccccceeEEecCCceEeeccc
Confidence 345777799999999999999885 6655554 43221000 1122222336689999999999999999999
Q ss_pred CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeeccc----------CCcceEEE
Q 015490 188 NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAK----------ENDELFAS 257 (406)
Q Consensus 188 dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~----------~~~~~~~~ 257 (406)
.|.+.+|.+.+++ ..-++.-.+.|..+.+|||+.+.+....|+.|.+-...+......+.+ ......+.
T Consensus 272 E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~ 350 (792)
T KOG1963|consen 272 EGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTG 350 (792)
T ss_pred ceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccccccccee
Confidence 9999999999988 445556666999999999999999999999999988755443333221 11233445
Q ss_pred EEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEe-----------------------------------------
Q 015490 258 CRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTK----------------------------------------- 296 (406)
Q Consensus 258 ~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~----------------------------------------- 296 (406)
++++|..+ .++..+..+.|.+||+.+.+.+..+
T Consensus 351 ~~idpr~~------~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~ 424 (792)
T KOG1963|consen 351 VSIDPRTN------SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFN 424 (792)
T ss_pred EEEcCCCC------ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhh
Confidence 66666333 2233345555555555432222111
Q ss_pred ---------------------------eecCCCeEEEEEcC-C-CCEEEEEeCCCcEEEEECCCce---------EEEEe
Q 015490 297 ---------------------------QVVREPVSSFNVSA-D-GKLLAVGTASGDISIIDSSSLQ---------VRTAV 338 (406)
Q Consensus 297 ---------------------------~~~~~~i~~~~~sp-~-~~~l~~~~~dg~i~i~d~~~~~---------~~~~~ 338 (406)
..|+..+...++.+ . ....++++.||.++||-+...+ ....+
T Consensus 425 ~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i 504 (792)
T KOG1963|consen 425 FFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAI 504 (792)
T ss_pred ccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeee
Confidence 11222333333332 2 2268888999999999883221 11112
Q ss_pred ecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCC
Q 015490 339 KKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDK 375 (406)
Q Consensus 339 ~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~ 375 (406)
...|..++++++|+.||. +++++.|++|.+||..+.
T Consensus 505 ~sy~k~~i~a~~fs~dGs-lla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 505 GSYHKTPITALCFSQDGS-LLAVSFDDTITIWDYDTK 540 (792)
T ss_pred eccccCcccchhhcCCCc-EEEEecCCEEEEecCCCh
Confidence 124788999999999996 555678999999999883
No 188
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.76 E-value=2.7e-15 Score=135.23 Aligned_cols=269 Identities=16% Similarity=0.165 Sum_probs=166.1
Q ss_pred EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccC
Q 015490 90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVG 168 (406)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (406)
.+..+|..+ .+.+.++......-..+.|+|||+++++++ ++.+. .+|..+.+ .+.++....
T Consensus 17 ~v~viD~~t----~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vs--viD~~~~~------------~v~~i~~G~ 78 (369)
T PF02239_consen 17 SVAVIDGAT----NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVS--VIDLATGK------------VVATIKVGG 78 (369)
T ss_dssp EEEEEETTT-----SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEE--EEETTSSS------------EEEEEE-SS
T ss_pred EEEEEECCC----CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEE--EEECCccc------------EEEEEecCC
Confidence 566667665 346777776555445578999999998887 65544 46655443 444444556
Q ss_pred cEEEEEECCCCCEEEEee-CCCeEEEEeCCCcceEeeeecc-------CCceeEEEEccCCCEEEEEe-CCCCEEEEEcC
Q 015490 169 QQLALTFDSEGTIFAAGS-ENGNLRVFKWPSLEIILNESEA-------HASVKDLSFSPDGKFLVSLG-NRGPGRVWDLA 239 (406)
Q Consensus 169 ~v~~~~~s~~g~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~s~s-~d~~i~iwd~~ 239 (406)
...++++|+||+++++++ ..+.+.++|.++.+.+..+... ...+..+.-+|....++..- +.+.|.+.|..
T Consensus 79 ~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~ 158 (369)
T PF02239_consen 79 NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYS 158 (369)
T ss_dssp EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETT
T ss_pred CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEec
Confidence 678899999999998775 5899999999999988776543 23577888888888555554 45788888877
Q ss_pred CCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEE-------------------------
Q 015490 240 SSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIR------------------------- 294 (406)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~------------------------- 294 (406)
..+....-............|+|++++ +++.......|.++|..+++.+.
T Consensus 159 d~~~~~~~~i~~g~~~~D~~~dpdgry-----~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw 233 (369)
T PF02239_consen 159 DPKNLKVTTIKVGRFPHDGGFDPDGRY-----FLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVW 233 (369)
T ss_dssp TSSCEEEEEEE--TTEEEEEE-TTSSE-----EEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEE
T ss_pred cccccceeeecccccccccccCcccce-----eeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEE
Confidence 654433222223344567889999885 22333334466666666554433
Q ss_pred ------------------------------EeeecCCCeEEEEEcCCCCEEEEE----eCCCcEEEEECCCceEEEEeec
Q 015490 295 ------------------------------TKQVVREPVSSFNVSADGKLLAVG----TASGDISIIDSSSLQVRTAVKK 340 (406)
Q Consensus 295 ------------------------------~~~~~~~~i~~~~~sp~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~ 340 (406)
++.....+ .-+.-+|+++++.+. ...++|.++|.++.+....+..
T Consensus 234 ~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~ 312 (369)
T PF02239_consen 234 ATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP 312 (369)
T ss_dssp EEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH
T ss_pred eeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEec
Confidence 22222223 456679999999998 3357899999999988887753
Q ss_pred ccccceEEEEEcCCCCeEEEEECC--CcEEEEEecCCcCCCCch
Q 015490 341 AHLGIVTALAFSYDSRALVSASMD--SSVRVTVIEDKKKSGGLN 382 (406)
Q Consensus 341 ~~~~~v~~~~~sp~~~~l~s~s~d--g~i~iw~~~~~~~~~~~~ 382 (406)
+....+..+.|++||+.+..+..+ +.|.+||..+.+.+..++
T Consensus 313 ~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 313 GPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp HHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred cCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 333458999999999987655443 369999999999887776
No 189
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=5.6e-17 Score=135.21 Aligned_cols=195 Identities=17% Similarity=0.289 Sum_probs=151.1
Q ss_pred CEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEcc--CCCEEEEEeCCCCEEEEEcCCCeeeeeccc--CCcceE
Q 015490 180 TIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSP--DGKFLVSLGNRGPGRVWDLASSAVATPLAK--ENDELF 255 (406)
Q Consensus 180 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~--~~~~~~ 255 (406)
..+|++..+|.|++||..+++.+..+.++...++.+.|.. ....+.+++.||+|++||+++......+.. +...+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688888999999999999999999999988899999976 456799999999999999998776655443 333355
Q ss_pred EEEEEEcCCCCceEEEEEEEc----CCCcEEEEEeCCCceE-EEEe-eecCCCeEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 015490 256 ASCRFSPLNNEDYVLYIAAIT----DRGASIVTWNTTTWKR-IRTK-QVVREPVSSFNVSA-DGKLLAVGTASGDISIID 328 (406)
Q Consensus 256 ~~~~~~~~~~~~~~l~~~~~~----~~~~~i~~~d~~~~~~-~~~~-~~~~~~i~~~~~sp-~~~~l~~~~~dg~i~i~d 328 (406)
.+++....++ +.+.+ ..+..|.+||.|..+. +..+ ..|...|++++|+| +.+.|++|+.||-|.+||
T Consensus 121 ~~ld~nck~~------ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD 194 (376)
T KOG1188|consen 121 ICLDLNCKKN------IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFD 194 (376)
T ss_pred eEeeccCcCC------eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeee
Confidence 5555554444 23332 3467899999998776 4443 46788999999999 568999999999999999
Q ss_pred CCCceE----EEEeecccccceEEEEEcCCC-CeEEEEECCCcEEEEEecCCcCCCCch
Q 015490 329 SSSLQV----RTAVKKAHLGIVTALAFSYDS-RALVSASMDSSVRVTVIEDKKKSGGLN 382 (406)
Q Consensus 329 ~~~~~~----~~~~~~~~~~~v~~~~~sp~~-~~l~s~s~dg~i~iw~~~~~~~~~~~~ 382 (406)
+..... +..+ .|...|..+.|..++ +.+.+-+...+..+|+++.+.....++
T Consensus 195 ~~~d~EeDaL~~vi--N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 195 TKKDNEEDALLHVI--NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred cCCCcchhhHHHhh--cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 975432 2333 467789999999887 347777889999999999988655544
No 190
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.75 E-value=1.9e-15 Score=136.34 Aligned_cols=225 Identities=10% Similarity=0.084 Sum_probs=149.5
Q ss_pred ecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEee-CCCeEEEEeCC-Ccce--Eeeeec
Q 015490 132 LQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGS-ENGNLRVFKWP-SLEI--ILNESE 207 (406)
Q Consensus 132 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~dg~i~vwd~~-~~~~--~~~~~~ 207 (406)
.++.+.+|+++.. +. ...++.+...+....++++|++++|++++ .++.|.+|+++ ++.. .... .
T Consensus 10 ~~~~I~~~~~~~~-g~----------l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~ 77 (330)
T PRK11028 10 ESQQIHVWNLNHE-GA----------LTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-P 77 (330)
T ss_pred CCCCEEEEEECCC-Cc----------eeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-c
Confidence 3888888887531 11 11223333445667889999999887764 47889999986 3332 1111 1
Q ss_pred cCCceeEEEEccCCCEEEEEeC-CCCEEEEEcCCCe----eeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEE
Q 015490 208 AHASVKDLSFSPDGKFLVSLGN-RGPGRVWDLASSA----VATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASI 282 (406)
Q Consensus 208 ~~~~i~~~~~s~~~~~l~s~s~-d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i 282 (406)
.......++++|+++++++++. ++.|.+|++.+.. ....+. .......++++|+++. +.++...++.|
T Consensus 78 ~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~~~p~g~~-----l~v~~~~~~~v 150 (330)
T PRK11028 78 LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE--GLEGCHSANIDPDNRT-----LWVPCLKEDRI 150 (330)
T ss_pred CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc--CCCcccEeEeCCCCCE-----EEEeeCCCCEE
Confidence 2235678999999998888774 7899999996422 222222 1223567889999985 45566778999
Q ss_pred EEEeCCCceEEEE-----ee-ecCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCC--c--eEEEEeec-----ccccce
Q 015490 283 VTWNTTTWKRIRT-----KQ-VVREPVSSFNVSADGKLLAVGTA-SGDISIIDSSS--L--QVRTAVKK-----AHLGIV 346 (406)
Q Consensus 283 ~~~d~~~~~~~~~-----~~-~~~~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~--~--~~~~~~~~-----~~~~~v 346 (406)
.+||+.+...+.. .. ........+.|+|+|+++++++. ++.|.+|+++. + +.+..+.. .+....
T Consensus 151 ~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 230 (330)
T PRK11028 151 RLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWA 230 (330)
T ss_pred EEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccc
Confidence 9999976332211 11 11234578999999999988877 89999999973 2 22333321 011223
Q ss_pred EEEEEcCCCCeEEEEE-CCCcEEEEEecCC
Q 015490 347 TALAFSYDSRALVSAS-MDSSVRVTVIEDK 375 (406)
Q Consensus 347 ~~~~~sp~~~~l~s~s-~dg~i~iw~~~~~ 375 (406)
..+.++|++++|+++. .++.|.+|++++.
T Consensus 231 ~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 231 ADIHITPDGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred eeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence 4688999999998875 4789999999654
No 191
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=9.4e-16 Score=122.27 Aligned_cols=239 Identities=13% Similarity=0.184 Sum_probs=171.5
Q ss_pred CCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeec-ccccCcEEEEEECCCCCEEEEeeCCCeE
Q 015490 114 DLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQ-LENVGQQLALTFDSEGTIFAAGSENGNL 191 (406)
Q Consensus 114 ~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~i 191 (406)
..|.+-+|+|.+++|+++. ++++.++.+........ .++....+.. ..|.++++.++|.. .+|++|+ ||.|
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa----~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V 83 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA----EPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLV 83 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc----CCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceE
Confidence 3466778999999999997 88888877654322211 1113333334 34558999999983 4566665 5999
Q ss_pred EEEeCCCcce------Ee--eeecc-----CCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEE
Q 015490 192 RVFKWPSLEI------IL--NESEA-----HASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASC 258 (406)
Q Consensus 192 ~vwd~~~~~~------~~--~~~~~-----~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 258 (406)
+-|..+.... .. ..+.+ -..|+++-..|..+.++.++.|+.++-||+++|+..+.+.+|.+ .+.++
T Consensus 84 ~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD-YvH~v 162 (325)
T KOG0649|consen 84 YGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD-YVHSV 162 (325)
T ss_pred EEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc-eeeee
Confidence 9998754322 00 11111 12789999999888888888999999999999999999997654 57777
Q ss_pred EEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC----------CCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 015490 259 RFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR----------EPVSSFNVSADGKLLAVGTASGDISIID 328 (406)
Q Consensus 259 ~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~----------~~i~~~~~sp~~~~l~~~~~dg~i~i~d 328 (406)
.-...... +.++++||++++||.++++.+..+...+ ..|.+++- +..++++|+ ...+.+|.
T Consensus 163 v~R~~~~q------ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwh 233 (325)
T KOG0649|consen 163 VGRNANGQ------ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWH 233 (325)
T ss_pred eecccCcc------eeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEe
Confidence 66333332 5788999999999999999988775432 23455554 466888776 45699999
Q ss_pred CCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490 329 SSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIE 373 (406)
Q Consensus 329 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~ 373 (406)
++..++...+. -.+++..+.|..| .+++++..+.|.-|.+.
T Consensus 234 Lrsse~t~vfp--ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 234 LRSSESTCVFP--IPARVHLVDFVDD--CVLIGGEGNHVQSYTLN 274 (325)
T ss_pred ccCCCceEEEe--cccceeEeeeecc--eEEEeccccceeeeeec
Confidence 99999888885 6677888888754 67777777788888874
No 192
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=4.1e-16 Score=145.06 Aligned_cols=192 Identities=17% Similarity=0.130 Sum_probs=131.7
Q ss_pred ccCcEEEEEECCCCCEEEEeeCC---CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEe-CCCCEEEE--EcC
Q 015490 166 NVGQQLALTFDSEGTIFAAGSEN---GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLG-NRGPGRVW--DLA 239 (406)
Q Consensus 166 ~~~~v~~~~~s~~g~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s-~d~~i~iw--d~~ 239 (406)
+...+...+|||||+.|+..+.+ ..|++||+.+++... +.........++|+|||+.|++++ .+|.+.|| |+.
T Consensus 202 ~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~ 280 (429)
T PRK01742 202 SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGAN 280 (429)
T ss_pred CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECC
Confidence 44678999999999999887653 479999998876432 222222345789999999888765 67766555 665
Q ss_pred CCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC--CceEEEEeeecCCCeEEEEEcCCCCEEEE
Q 015490 240 SSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT--TWKRIRTKQVVREPVSSFNVSADGKLLAV 317 (406)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~--~~~~~~~~~~~~~~i~~~~~sp~~~~l~~ 317 (406)
+++. ..+.. +...+....|+|+++. ++.+.+.++...+|+++ .+.. ..+ .+.. ....|+|||++|++
T Consensus 281 ~~~~-~~lt~-~~~~~~~~~wSpDG~~-----i~f~s~~~g~~~I~~~~~~~~~~-~~l-~~~~--~~~~~SpDG~~ia~ 349 (429)
T PRK01742 281 GGTP-SQLTS-GAGNNTEPSWSPDGQS-----ILFTSDRSGSPQVYRMSASGGGA-SLV-GGRG--YSAQISADGKTLVM 349 (429)
T ss_pred CCCe-Eeecc-CCCCcCCEEECCCCCE-----EEEEECCCCCceEEEEECCCCCe-EEe-cCCC--CCccCCCCCCEEEE
Confidence 5554 33433 2334668999999985 33344455666666553 3322 222 2332 46789999999998
Q ss_pred EeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490 318 GTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIE 373 (406)
Q Consensus 318 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~ 373 (406)
.+.++ +.+||+.+++...... .+ ...++.|+|||++|+.++.++.+.+|.+.
T Consensus 350 ~~~~~-i~~~Dl~~g~~~~lt~-~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 350 INGDN-VVKQDLTSGSTEVLSS-TF--LDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred EcCCC-EEEEECCCCCeEEecC-CC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 87755 6669998887553322 22 23568899999999999999999988864
No 193
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.74 E-value=3.2e-16 Score=129.72 Aligned_cols=229 Identities=11% Similarity=0.041 Sum_probs=172.2
Q ss_pred EEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEe
Q 015490 108 ELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAG 185 (406)
Q Consensus 108 ~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~ 185 (406)
.+..-..+|+|.+|++|+..++++. ...+.||.+...+ .-+...++. |...|++++|+|..+.|+++
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~-----------~w~~~htls~Hd~~vtgvdWap~snrIvtc 73 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD-----------LWEPAHTLSEHDKIVTGVDWAPKSNRIVTC 73 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCC-----------CceeceehhhhCcceeEEeecCCCCceeEc
Confidence 3444567899999999999999987 6688898887653 122333343 44789999999999999999
Q ss_pred eCCCeEEEEeCCC-c--ceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCee---eeecccCCcceEEEEE
Q 015490 186 SENGNLRVFKWPS-L--EIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAV---ATPLAKENDELFASCR 259 (406)
Q Consensus 186 ~~dg~i~vwd~~~-~--~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~ 259 (406)
+.|..-+||.... + +....+..++...+++.|+|.++.|++++....|.||-++...- .+.+..+....|.++.
T Consensus 74 s~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sld 153 (361)
T KOG1523|consen 74 SHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLD 153 (361)
T ss_pred cCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeee
Confidence 9999999999833 3 34556677888999999999999999999999999998865432 2234445566789999
Q ss_pred EEcCCCCceEEEEEEEcCCCcEEEEEeCCC------------------ceEEEEeeecCCCeEEEEEcCCCCEEEEEeCC
Q 015490 260 FSPLNNEDYVLYIAAITDRGASIVTWNTTT------------------WKRIRTKQVVREPVSSFNVSADGKLLAVGTAS 321 (406)
Q Consensus 260 ~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~------------------~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d 321 (406)
|+|++- +++.++.|+..+++..-- ++.+.++....+.+..+.|+|+|..|+-.+.|
T Consensus 154 WhpnnV------LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hd 227 (361)
T KOG1523|consen 154 WHPNNV------LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHD 227 (361)
T ss_pred ccCCcc------eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCC
Confidence 999985 577888899988885421 22233343445789999999999999999999
Q ss_pred CcEEEEECCCce-EEEEeecccccceEEEEEcCC
Q 015490 322 GDISIIDSSSLQ-VRTAVKKAHLGIVTALAFSYD 354 (406)
Q Consensus 322 g~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~sp~ 354 (406)
..+.+-|..... .+......+ .+..++.|-.+
T Consensus 228 s~v~~~da~~p~~~v~~~~~~~-lP~ls~~~ise 260 (361)
T KOG1523|consen 228 STVSFVDAAGPSERVQSVATAQ-LPLLSVSWISE 260 (361)
T ss_pred CceEEeecCCCchhccchhhcc-CCceeeEeecC
Confidence 999999987664 333333223 66777777544
No 194
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.74 E-value=1.5e-16 Score=143.52 Aligned_cols=230 Identities=15% Similarity=0.195 Sum_probs=169.9
Q ss_pred CceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCEEEEeeCCCeEEE
Q 015490 115 LPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGSENGNLRV 193 (406)
Q Consensus 115 ~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i~v 193 (406)
.|..++|.|||..|+.+.++.+.+ +|.++ +..++++.+| +.|.|++|+.||+.+|+|+.|..|.+
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlli--yD~nd------------G~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~ 79 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLV--YDTSD------------GTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVII 79 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEE--EeCCC------------cccccccccccceEEEEEEccCCceeccCCCceeEEE
Confidence 789999999999999887776555 45543 3445555555 78999999999999999999999999
Q ss_pred EeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEE
Q 015490 194 FKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIA 273 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (406)
|.-.-...+ . ..|.+.|.|+.|+|-...|++++-. ..-+|........ +......+.+++|..+|.+ +
T Consensus 80 W~~klEG~L-k-YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~---K~kss~R~~~CsWtnDGqy------l 147 (1081)
T KOG1538|consen 80 WTSKLEGIL-K-YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVS---KHKSSSRIICCSWTNDGQY------L 147 (1081)
T ss_pred eccccccee-e-eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHH---hhhhheeEEEeeecCCCcE------E
Confidence 985433222 2 3567799999999999999998854 4667876543222 1223456889999999984 5
Q ss_pred EEcCCCcEEEEEeCCCceEEEE--eeecCCCeEEEEEcCCC-----CEEEEEeCCCcEEEEECCCceEEEEeecccccce
Q 015490 274 AITDRGASIVTWNTTTWKRIRT--KQVVREPVSSFNVSADG-----KLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIV 346 (406)
Q Consensus 274 ~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~i~~~~~sp~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v 346 (406)
+.|-.+|+|.+-+-........ .-+...+|.+++|+|.. ..+++.....++.+|.+. |+.+..-. ...-..
T Consensus 148 alG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r-~L~FdP 225 (1081)
T KOG1538|consen 148 ALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDR-ALNFDP 225 (1081)
T ss_pred EEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccc-cCCCCc
Confidence 5667799998876543332222 22356789999999953 478888888888888886 45444322 344556
Q ss_pred EEEEEcCCCCeEEEEECCCcEEEEEe
Q 015490 347 TALAFSYDSRALVSASMDSSVRVTVI 372 (406)
Q Consensus 347 ~~~~~sp~~~~l~s~s~dg~i~iw~~ 372 (406)
.|+.+.++|.+++.|+.|+.+++|.-
T Consensus 226 ~CisYf~NGEy~LiGGsdk~L~~fTR 251 (1081)
T KOG1538|consen 226 CCISYFTNGEYILLGGSDKQLSLFTR 251 (1081)
T ss_pred hhheeccCCcEEEEccCCCceEEEee
Confidence 78999999999999999999988864
No 195
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.73 E-value=8.3e-16 Score=126.10 Aligned_cols=159 Identities=18% Similarity=0.278 Sum_probs=118.5
Q ss_pred eEEEEccCCCEEEEEeC----------CCCEEEEEcCC-CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcE
Q 015490 213 KDLSFSPDGKFLVSLGN----------RGPGRVWDLAS-SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGAS 281 (406)
Q Consensus 213 ~~~~~s~~~~~l~s~s~----------d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 281 (406)
..+.|+++|.+|+.-.. -+...+|.++. +.....+.......|..++|+|+++. ++++.+..+..
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~----favi~g~~~~~ 84 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNE----FAVIYGSMPAK 84 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCE----EEEEEccCCcc
Confidence 45889999997775433 23455665532 23444454444556999999999986 45556667789
Q ss_pred EEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeE
Q 015490 282 IVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA---SGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRAL 358 (406)
Q Consensus 282 i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 358 (406)
|.+||++ .+.+..+. ...+..+.|+|+|++|++++. .|.|.+||.++.+.+.... |. .++.++|+|||++|
T Consensus 85 v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~-~~t~~~WsPdGr~~ 158 (194)
T PF08662_consen 85 VTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HS-DATDVEWSPDGRYL 158 (194)
T ss_pred cEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--cC-cEEEEEEcCCCCEE
Confidence 9999997 45555553 466789999999999999875 4679999999988887764 44 47899999999999
Q ss_pred EEEEC------CCcEEEEEecCCcCCCCch
Q 015490 359 VSASM------DSSVRVTVIEDKKKSGGLN 382 (406)
Q Consensus 359 ~s~s~------dg~i~iw~~~~~~~~~~~~ 382 (406)
++++. |+.++||++ +|+.+.+.+
T Consensus 159 ~ta~t~~r~~~dng~~Iw~~-~G~~l~~~~ 187 (194)
T PF08662_consen 159 ATATTSPRLRVDNGFKIWSF-QGRLLYKKP 187 (194)
T ss_pred EEEEeccceeccccEEEEEe-cCeEeEecc
Confidence 98863 788999999 466665544
No 196
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.72 E-value=3.1e-16 Score=138.18 Aligned_cols=182 Identities=14% Similarity=0.176 Sum_probs=143.5
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee
Q 015490 166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT 245 (406)
Q Consensus 166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~ 245 (406)
|.+.+.|-.|+|||.-|+++++||.|++|. ++|-....+.....+|+|++|.|+.+.++.+..+ .+.|=.+.....+.
T Consensus 103 H~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~-h~~IKpL~~n~k~i 180 (737)
T KOG1524|consen 103 HAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGG-HISIKPLAANSKII 180 (737)
T ss_pred hhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecCC-eEEEeeccccccee
Confidence 447899999999999999999999999999 5665555555555689999999999888777644 66666665555555
Q ss_pred ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 015490 246 PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDIS 325 (406)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~ 325 (406)
.... |++.+.++.|++... +++++++|-..++||... ..+..-..|..+|++++|.|+ +.++.++. ++++
T Consensus 181 ~WkA-HDGiiL~~~W~~~s~------lI~sgGED~kfKvWD~~G-~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R 250 (737)
T KOG1524|consen 181 RWRA-HDGLVLSLSWSTQSN------IIASGGEDFRFKIWDAQG-ANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTAR 250 (737)
T ss_pred EEec-cCcEEEEeecCcccc------ceeecCCceeEEeecccC-cccccCChhccceeeeeeccc-cceeeeee-eeee
Confidence 5554 466788999999887 678999999999999874 667777788999999999999 66666553 2333
Q ss_pred EEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEE
Q 015490 326 IIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTV 371 (406)
Q Consensus 326 i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~ 371 (406)
+.....+.|..++||+||..++.|+..|.+.+=.
T Consensus 251 ------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 251 ------------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred ------------ecCCCccceEEEEEcCCCceeeccccCceEEEee
Confidence 3335678899999999999999999888776543
No 197
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.72 E-value=4.1e-16 Score=140.04 Aligned_cols=233 Identities=11% Similarity=0.124 Sum_probs=156.8
Q ss_pred cEEEEEEecCCCCccccceeEEecCCCCceEEEEcc-CCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc
Q 015490 88 AVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHP-HGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE 165 (406)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (406)
.+.++.++...+. +...+-.+ .....|+.+.|.| |...|++++ ++.++||.+......+.. ..+-..+.
T Consensus 604 ~iai~el~~PGrL-PDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~-------~tPe~~lt 674 (1012)
T KOG1445|consen 604 VIAIYELNEPGRL-PDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE-------MTPEKILT 674 (1012)
T ss_pred eEEEEEcCCCCCC-Cccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc-------CCcceeee
Confidence 4566666654422 11111122 2345789999999 455777777 899999998776543321 11222233
Q ss_pred -ccCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCee
Q 015490 166 -NVGQQLALTFDS-EGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAV 243 (406)
Q Consensus 166 -~~~~v~~~~~s~-~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~ 243 (406)
|...|+.+.|+| ....|+++++|-+|++||+.+++....+.+|.+.|.+++|||+|+.+++.+.||++++|+.++++.
T Consensus 675 ~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~ 754 (1012)
T KOG1445|consen 675 IHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ 754 (1012)
T ss_pred cccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC
Confidence 347899999999 457899999999999999999999999999999999999999999999999999999999987653
Q ss_pred -eeecccCCcceEEEEEEEcCCCCceEEEEEEEc---CCCcEEEEEeCCCce--EEEEeeecC-CCeEEEEEcCCCC-EE
Q 015490 244 -ATPLAKENDELFASCRFSPLNNEDYVLYIAAIT---DRGASIVTWNTTTWK--RIRTKQVVR-EPVSSFNVSADGK-LL 315 (406)
Q Consensus 244 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~i~~~d~~~~~--~~~~~~~~~-~~i~~~~~sp~~~-~l 315 (406)
++.-.+..+..-..+.|.-+++. ++++| .....|.+||.++-. .+.+....- -.+.--.+.+|.+ ++
T Consensus 755 pv~Eg~gpvgtRgARi~wacdgr~-----viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lf 829 (1012)
T KOG1445|consen 755 PVYEGKGPVGTRGARILWACDGRI-----VIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLF 829 (1012)
T ss_pred ccccCCCCccCcceeEEEEecCcE-----EEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEE
Confidence 33333333333446788888884 33333 335678888876532 233322211 1122233555655 45
Q ss_pred EEEeCCCcEEEEECCCceE
Q 015490 316 AVGTASGDISIIDSSSLQV 334 (406)
Q Consensus 316 ~~~~~dg~i~i~d~~~~~~ 334 (406)
++|-.|..|.+|.+-...+
T Consensus 830 ltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 830 LTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred EecCCCceEEEEEecCCCc
Confidence 5666699999999865443
No 198
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.71 E-value=1.8e-15 Score=133.43 Aligned_cols=220 Identities=13% Similarity=0.154 Sum_probs=150.5
Q ss_pred CceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEE-----CCCCCEEEEeeCCC
Q 015490 115 LPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTF-----DSEGTIFAAGSENG 189 (406)
Q Consensus 115 ~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----s~~g~~l~~~~~dg 189 (406)
.+....++-.|++|+......+.+|.+...... .....+.+-......|-+| .|++--+..|-.-|
T Consensus 125 ~~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~---------~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tG 195 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVGRELYVYSYRGAADL---------SKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTG 195 (636)
T ss_pred ceeeccccCCCCEEEEecCCeEEEEEccCcchh---------ccchhhhcccCCCCceecccccccCCCCcceEEeeccC
Confidence 455666666778888776777777766532111 0000011111122233344 35666777888889
Q ss_pred eEEEEeCCCcceEeeeec-----cCCceeEEEEccCCC-EEEEEeCCCCEEEEEcCC--------------Ce-------
Q 015490 190 NLRVFKWPSLEIILNESE-----AHASVKDLSFSPDGK-FLVSLGNRGPGRVWDLAS--------------SA------- 242 (406)
Q Consensus 190 ~i~vwd~~~~~~~~~~~~-----~~~~i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~--------------~~------- 242 (406)
.|.+.|....+ +..+.. ....|+++.|-|.+. .++++-.+|.+++||..- +.
T Consensus 196 qvq~idp~~~~-~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ 274 (636)
T KOG2394|consen 196 QVQLIDPINFE-VSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTS 274 (636)
T ss_pred ceEEecchhhH-HHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeee
Confidence 99998875522 212111 124899999988544 566677899999997631 10
Q ss_pred -------eeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEE
Q 015490 243 -------VATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLL 315 (406)
Q Consensus 243 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l 315 (406)
++..+.. ....+...+|+||+++ +++.+.||.++|+|..+.+.+..++..-+...|++|||||+||
T Consensus 275 ksk~~rNPv~~w~~-~~g~in~f~FS~DG~~------LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyI 347 (636)
T KOG2394|consen 275 KSKKTRNPVARWHI-GEGSINEFAFSPDGKY------LATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYI 347 (636)
T ss_pred eccccCCccceeEe-ccccccceeEcCCCce------EEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEE
Confidence 0111111 1225678899999985 5666899999999999987776666555778999999999999
Q ss_pred EEEeCCCcEEEEECCCceEEEEeecccccceEEEEEc
Q 015490 316 AVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFS 352 (406)
Q Consensus 316 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s 352 (406)
++|++|.-|.||.+...+.+..=. +|..+|..++|.
T Consensus 348 vtGGEDDLVtVwSf~erRVVARGq-GHkSWVs~VaFD 383 (636)
T KOG2394|consen 348 VTGGEDDLVTVWSFEERRVVARGQ-GHKSWVSVVAFD 383 (636)
T ss_pred EecCCcceEEEEEeccceEEEecc-ccccceeeEeec
Confidence 999999999999999999988875 999999999998
No 199
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=2.5e-14 Score=120.50 Aligned_cols=256 Identities=13% Similarity=0.072 Sum_probs=164.1
Q ss_pred CCCCceEEEEccCCC-eEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC-CC
Q 015490 112 DSDLPYRMAIHPHGD-GIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE-NG 189 (406)
Q Consensus 112 h~~~v~~~~~sp~~~-~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg 189 (406)
.+..|+|++|-|.+. .|++++...+.||..+.........-........+....++..|+++.|++||..+++++. |.
T Consensus 139 sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gss 218 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSS 218 (445)
T ss_pred hhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcc
Confidence 457899999999764 6677778888998876542211110001001112223345678999999999999999876 56
Q ss_pred eEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceE
Q 015490 190 NLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYV 269 (406)
Q Consensus 190 ~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (406)
.|.|||.+++..+.-.....+.++-+.||||+.+|+.++-|+..++|+..............+ .+....|+|+|+. +
T Consensus 219 si~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsg-rvqtacWspcGsf--L 295 (445)
T KOG2139|consen 219 SIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSG-RVQTACWSPCGSF--L 295 (445)
T ss_pred eEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCC-ceeeeeecCCCCE--E
Confidence 899999999887755545556889999999999999999999999997654433333332333 6888999999995 2
Q ss_pred EEEEEEcCCCcEEEEEeCCC--ce-----------EEEEe------e---ecCCCeEEEEEcCCCCEEEEEeCCC-----
Q 015490 270 LYIAAITDRGASIVTWNTTT--WK-----------RIRTK------Q---VVREPVSSFNVSADGKLLAVGTASG----- 322 (406)
Q Consensus 270 l~~~~~~~~~~~i~~~d~~~--~~-----------~~~~~------~---~~~~~i~~~~~sp~~~~l~~~~~dg----- 322 (406)
+.+......++-..... .. .+..+ . .-.+.+.+++|+|.|.+||+.-..+
T Consensus 296 ---Lf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~ 372 (445)
T KOG2139|consen 296 ---LFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLL 372 (445)
T ss_pred ---EEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhh
Confidence 22223333333222111 00 00001 0 1135788999999999999876533
Q ss_pred ---cEEEEECCCceEEEEeecc--cccceEEEEEcC---CCCeEEEEECCCcEEEEEec
Q 015490 323 ---DISIIDSSSLQVRTAVKKA--HLGIVTALAFSY---DSRALVSASMDSSVRVTVIE 373 (406)
Q Consensus 323 ---~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~sp---~~~~l~s~s~dg~i~iw~~~ 373 (406)
.|.+||.+..-......-+ ......-++|+| ++++|..+=.-|.+.-|++.
T Consensus 373 ~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 373 CKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred hhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 3677887754443333111 111244566666 56777666677888888764
No 200
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=1.4e-14 Score=135.19 Aligned_cols=238 Identities=16% Similarity=0.121 Sum_probs=156.0
Q ss_pred EEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeecccc
Q 015490 89 VLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN 166 (406)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (406)
..++.++.+. .....+..|...+.+.+|+|||+.|+..+ ++.-.||.|+..++... . + ...
T Consensus 182 ~~l~~~d~dg-----~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~---------l--~~~ 244 (435)
T PRK05137 182 KRLAIMDQDG-----ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-L---------V--GNF 244 (435)
T ss_pred eEEEEECCCC-----CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-E---------e--ecC
Confidence 3566666544 34456778888999999999999988875 44567888887644321 1 1 112
Q ss_pred cCcEEEEEECCCCCEEE-EeeCCC--eEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeC-CC--CEEEEEcCC
Q 015490 167 VGQQLALTFDSEGTIFA-AGSENG--NLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGN-RG--PGRVWDLAS 240 (406)
Q Consensus 167 ~~~v~~~~~s~~g~~l~-~~~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~-d~--~i~iwd~~~ 240 (406)
.+.+...+|+|||+.|+ +.+.++ .|++||+.+++.. .+..+........|+|||+.|+..+. ++ .|+++|+.+
T Consensus 245 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g 323 (435)
T PRK05137 245 PGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG 323 (435)
T ss_pred CCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC
Confidence 34566889999998776 445555 4778898877654 44444455678999999999888774 33 588888876
Q ss_pred CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC
Q 015490 241 SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA 320 (406)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~ 320 (406)
++... +... ...+....|+|+++. +++.........|.+||+.++.. ..+.. ...+..+.|+|||+.|+..+.
T Consensus 324 ~~~~~-lt~~-~~~~~~~~~SpdG~~---ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 324 SNPRR-ISFG-GGRYSTPVWSPRGDL---IAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred CCeEE-eecC-CCcccCeEECCCCCE---EEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCCEEEEEEc
Confidence 65433 3222 223456889999985 22222223345789999865443 33332 234678999999999887654
Q ss_pred C------CcEEEEECCCceEEEEeecccccceEEEEEcCC
Q 015490 321 S------GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYD 354 (406)
Q Consensus 321 d------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~ 354 (406)
+ ..+.++|+..+.. ..+. ..+.+...+|+|-
T Consensus 397 ~~~~~~~~~L~~~dl~g~~~-~~l~--~~~~~~~p~Wsp~ 433 (435)
T PRK05137 397 TPGSGGAPKLYTVDLTGRNE-REVP--TPGDASDPAWSPL 433 (435)
T ss_pred cCCCCCcceEEEEECCCCce-EEcc--CCCCccCcccCCC
Confidence 3 2588888876554 3443 3445677788763
No 201
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=5.4e-15 Score=137.39 Aligned_cols=238 Identities=15% Similarity=0.149 Sum_probs=150.8
Q ss_pred EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeeccccc
Q 015490 90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV 167 (406)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (406)
.++.+|.+. .....+..+...+.+.+|+|||+.|+.++ ++.-.||.++..+++... +. ...
T Consensus 177 ~L~~~D~dG-----~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----------l~--~~~ 239 (427)
T PRK02889 177 QLQISDADG-----QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----------VA--NFK 239 (427)
T ss_pred EEEEECCCC-----CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----------ee--cCC
Confidence 566666544 23345567788899999999999998876 344568888876543211 11 122
Q ss_pred CcEEEEEECCCCCEEE-EeeCCCeEEEEe--CCCcceEeeeeccCCceeEEEEccCCCEEEEEeC-CCCEEEEEc--CCC
Q 015490 168 GQQLALTFDSEGTIFA-AGSENGNLRVFK--WPSLEIILNESEAHASVKDLSFSPDGKFLVSLGN-RGPGRVWDL--ASS 241 (406)
Q Consensus 168 ~~v~~~~~s~~g~~l~-~~~~dg~i~vwd--~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~-d~~i~iwd~--~~~ 241 (406)
+.+.+.+|+|||+.|+ +.+.+|...||. +.++. ...+..+........|+|||+.|+..+. ++...+|.+ .++
T Consensus 240 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g 318 (427)
T PRK02889 240 GSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG 318 (427)
T ss_pred CCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC
Confidence 3456789999998876 456677766665 44443 3444444445677899999998887664 456666654 444
Q ss_pred eeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCC
Q 015490 242 AVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAS 321 (406)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d 321 (406)
+..... .. ........|+|+++. ++.....+....|++||+.+++.. .+... .......|+|||+.|+..+.+
T Consensus 319 ~~~~lt-~~-g~~~~~~~~SpDG~~---Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~-~~~~~p~~spdg~~l~~~~~~ 391 (427)
T PRK02889 319 AAQRVT-FT-GSYNTSPRISPDGKL---LAYISRVGGAFKLYVQDLATGQVT-ALTDT-TRDESPSFAPNGRYILYATQQ 391 (427)
T ss_pred ceEEEe-cC-CCCcCceEECCCCCE---EEEEEccCCcEEEEEEECCCCCeE-EccCC-CCccCceECCCCCEEEEEEec
Confidence 432222 11 122345789999985 222221222347999999887643 33322 334678999999999887764
Q ss_pred C---cEEEEECCCceEEEEeecccccceEEEEEcCC
Q 015490 322 G---DISIIDSSSLQVRTAVKKAHLGIVTALAFSYD 354 (406)
Q Consensus 322 g---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~ 354 (406)
+ .+.+.++. +.....+. .+.+.+...+|+|-
T Consensus 392 ~g~~~l~~~~~~-g~~~~~l~-~~~g~~~~p~wsp~ 425 (427)
T PRK02889 392 GGRSVLAAVSSD-GRIKQRLS-VQGGDVREPSWGPF 425 (427)
T ss_pred CCCEEEEEEECC-CCceEEee-cCCCCCCCCccCCC
Confidence 3 36666763 55555554 46677888889873
No 202
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=3.8e-16 Score=133.90 Aligned_cols=194 Identities=15% Similarity=0.205 Sum_probs=146.3
Q ss_pred eEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEe
Q 015490 117 YRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFK 195 (406)
Q Consensus 117 ~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd 195 (406)
.+++|+++|..+++++ |+.+|||+|... ........|+..|.++.|||||++|++-+.| ..+||+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~-------------~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~ 213 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM-------------LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWS 213 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc-------------hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEE
Confidence 6899999999999997 999999998753 2233345678999999999999999999999 899999
Q ss_pred CCCcceEeeeeccCC--ceeEEEEccCC---CE--EEEEeCCCCEEEEEcCCCee---eeecc-cCCcceEEEEEEEcCC
Q 015490 196 WPSLEIILNESEAHA--SVKDLSFSPDG---KF--LVSLGNRGPGRVWDLASSAV---ATPLA-KENDELFASCRFSPLN 264 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~--~i~~~~~s~~~---~~--l~s~s~d~~i~iwd~~~~~~---~~~~~-~~~~~~~~~~~~~~~~ 264 (406)
.+++..+........ ....+.|+.|+ .+ ++....-+.|+.||+..... .+..+ ......+.+++.+++|
T Consensus 214 ~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dG 293 (398)
T KOG0771|consen 214 VNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDG 293 (398)
T ss_pred eccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCC
Confidence 999976655542222 66778888877 32 33334456777777643221 11111 1123358899999999
Q ss_pred CCceEEEEEEEcCCCcEEEEEeCCCceEEEEe-eecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 015490 265 NEDYVLYIAAITDRGASIVTWNTTTWKRIRTK-QVVREPVSSFNVSADGKLLAVGTASGDISIIDSS 330 (406)
Q Consensus 265 ~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~ 330 (406)
+ +++.++.+|.|.+++..+.+.+.-. +.|...|+.+.|+||.+++++.+.+....+..+.
T Consensus 294 k------f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 294 K------FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred c------EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 9 4677788999999999887765544 4678899999999999999998888888877664
No 203
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.71 E-value=1.8e-17 Score=143.36 Aligned_cols=200 Identities=15% Similarity=0.263 Sum_probs=173.0
Q ss_pred EEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeeccc
Q 015490 170 QLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAK 249 (406)
Q Consensus 170 v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 249 (406)
...+.++.+|+.++.|+..|.|..+|+.+++....+.- ...|.++.|..+.+++|++- ...++|||- .|..++.+..
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~-~GtElHClk~ 208 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYDN-NGTELHCLKR 208 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEecC-CCcEEeehhh
Confidence 45789999999999999999999999999988766543 34689999998888777665 558999996 5677777764
Q ss_pred CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 015490 250 ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDS 329 (406)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~ 329 (406)
+ ..+..+.|.|.. |++++++..|.+..-|+.+|+.+..+....+.+..|+-+|-+..+-+|...|+|.+|..
T Consensus 209 ~--~~v~rLeFLPyH------fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP 280 (545)
T KOG1272|consen 209 H--IRVARLEFLPYH------FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSP 280 (545)
T ss_pred c--Cchhhhcccchh------heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCC
Confidence 4 346788999975 47788899999999999999999999888899999999999999999999999999999
Q ss_pred CCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490 330 SSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL 381 (406)
Q Consensus 330 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~ 381 (406)
...+++..+. .|.++|.++++.++|+|++|.+.|..++|||++.-..+.+.
T Consensus 281 ~skePLvKiL-cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~ 331 (545)
T KOG1272|consen 281 NSKEPLVKIL-CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTY 331 (545)
T ss_pred CCcchHHHHH-hcCCCcceEEECCCCcEEeecccccceeEeeecccccccee
Confidence 9999988886 89999999999999999999999999999999987765443
No 204
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=7.2e-15 Score=137.03 Aligned_cols=237 Identities=15% Similarity=0.134 Sum_probs=153.6
Q ss_pred EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeeccccc
Q 015490 90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV 167 (406)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (406)
.++.+|... .....+..|...+.+.+|+|||+.|+..+ ++...||.++..+++... +.. ..
T Consensus 185 ~l~i~D~~g-----~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~----------l~~--~~ 247 (433)
T PRK04922 185 ALQVADSDG-----YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL----------VAS--FR 247 (433)
T ss_pred EEEEECCCC-----CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE----------ecc--CC
Confidence 455566543 23455667788899999999999999876 344567777765443211 111 12
Q ss_pred CcEEEEEECCCCCEEEE-eeCCC--eEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeC-CCC--EEEEEcCCC
Q 015490 168 GQQLALTFDSEGTIFAA-GSENG--NLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGN-RGP--GRVWDLASS 241 (406)
Q Consensus 168 ~~v~~~~~s~~g~~l~~-~~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~-d~~--i~iwd~~~~ 241 (406)
+...+.+|+|||+.++. .+.+| .|++||+.+++.. .+..+......++|+|||++|+.++. ++. |+++|+.++
T Consensus 248 g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g 326 (433)
T PRK04922 248 GINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG 326 (433)
T ss_pred CCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 33457899999987764 44555 6999999887654 34444444567899999999887764 444 666777666
Q ss_pred eeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCC
Q 015490 242 AVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAS 321 (406)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d 321 (406)
+..... .. .......+|+|+++. +++....+....|.+||+.+++.. .+.. ........|+|||++|+..+.+
T Consensus 327 ~~~~lt-~~-g~~~~~~~~SpDG~~---Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~-~~~~~~p~~spdG~~i~~~s~~ 399 (433)
T PRK04922 327 SAERLT-FQ-GNYNARASVSPDGKK---IAMVHGSGGQYRIAVMDLSTGSVR-TLTP-GSLDESPSFAPNGSMVLYATRE 399 (433)
T ss_pred CeEEee-cC-CCCccCEEECCCCCE---EEEEECCCCceeEEEEECCCCCeE-ECCC-CCCCCCceECCCCCEEEEEEec
Confidence 543322 11 222346899999985 222212222347999999887654 3332 2234578999999998877663
Q ss_pred ---CcEEEEECCCceEEEEeecccccceEEEEEcC
Q 015490 322 ---GDISIIDSSSLQVRTAVKKAHLGIVTALAFSY 353 (406)
Q Consensus 322 ---g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp 353 (406)
+.|.++++.. .....+. .+.+.+..++|+|
T Consensus 400 ~g~~~L~~~~~~g-~~~~~l~-~~~g~~~~p~wsp 432 (433)
T PRK04922 400 GGRGVLAAVSTDG-RVRQRLV-SADGEVREPAWSP 432 (433)
T ss_pred CCceEEEEEECCC-CceEEcc-cCCCCCCCCccCC
Confidence 4588888854 4445553 4566778888886
No 205
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.70 E-value=4.3e-16 Score=137.26 Aligned_cols=239 Identities=16% Similarity=0.203 Sum_probs=164.4
Q ss_pred cCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCe
Q 015490 111 TDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGN 190 (406)
Q Consensus 111 ~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 190 (406)
.|..-|.|+.|+.+...+.++.|....+ |..........+..++. .+-+..|..+ .+..=-.....|+.++.||.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~--~~~~~~~s~~~~~~p~d--f~pt~~h~~~-rs~~~g~~~d~~~i~s~DGk 86 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFK--WSDVSRDSVEVAKLPDD--FVPTDMHLGG-RSSGGGKGSDTLLICSNDGR 86 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEE--eecccchhhhhhhCCcc--cCCccccccc-cccCCCCCcceEEEEcCCce
Confidence 4666778999998887777665554333 33222222222211111 1111111000 00000012257888899999
Q ss_pred EEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEE
Q 015490 191 LRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVL 270 (406)
Q Consensus 191 i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 270 (406)
+.+.+ +.++....+..|.+.+.+-.|+|||.-|++++.||.|++|.- +|-...++ ......++|++|.|+.+. ++
T Consensus 87 f~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl-~Q~~~~v~c~~W~p~S~~--vl 161 (737)
T KOG1524|consen 87 FVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTV-VQNEESIRCARWAPNSNS--IV 161 (737)
T ss_pred EEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHH-hhcCceeEEEEECCCCCc--eE
Confidence 99988 566666777888889999999999999999999999999985 33332222 345667999999999987 22
Q ss_pred EEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEE
Q 015490 271 YIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALA 350 (406)
Q Consensus 271 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 350 (406)
.+ ..+.+.+=-+.....+-..+.|.+-|.++.|++..+.+++|++|-..++||.. |..+..-. .|..+|++++
T Consensus 162 ---~c--~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~-~~ey~ITSva 234 (737)
T KOG1524|consen 162 ---FC--QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSA-AEEYAITSVA 234 (737)
T ss_pred ---Ee--cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCC-hhccceeeee
Confidence 22 24566666666556667788999999999999999999999999999999976 55555543 7999999999
Q ss_pred EcCCCCeEEEEECCCcEE
Q 015490 351 FSYDSRALVSASMDSSVR 368 (406)
Q Consensus 351 ~sp~~~~l~s~s~dg~i~ 368 (406)
|.|+ ..++.+|.+ ++|
T Consensus 235 ~npd-~~~~v~S~n-t~R 250 (737)
T KOG1524|consen 235 FNPE-KDYLLWSYN-TAR 250 (737)
T ss_pred eccc-cceeeeeee-eee
Confidence 9999 666666643 444
No 206
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.70 E-value=1.4e-12 Score=117.93 Aligned_cols=270 Identities=18% Similarity=0.255 Sum_probs=175.6
Q ss_pred cCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEec-----CCeEEEEEecccccceeecceeccce
Q 015490 85 IRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQ-----NSCRLFEWDEVENTEIRRLGVKISEK 159 (406)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~ 159 (406)
....+..+.+|.+...+.. +... ........++++|++++|.++.. +.+..|.++..++.. .
T Consensus 11 ~~~gI~~~~~d~~~g~l~~--~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L-~--------- 77 (345)
T PF10282_consen 11 KGGGIYVFRFDEETGTLTL--VQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTL-T--------- 77 (345)
T ss_dssp SSTEEEEEEEETTTTEEEE--EEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEE-E---------
T ss_pred CCCcEEEEEEcCCCCCceE--eeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCccee-E---------
Confidence 3457788888887766532 2222 24456688999999999998863 345555555432211 1
Q ss_pred eeeccc-ccCcEEEEEECCCCCEEEEeeC-CCeEEEEeCCC-cceEee--ee-----------ccCCceeEEEEccCCCE
Q 015490 160 VLSQLE-NVGQQLALTFDSEGTIFAAGSE-NGNLRVFKWPS-LEIILN--ES-----------EAHASVKDLSFSPDGKF 223 (406)
Q Consensus 160 ~~~~~~-~~~~v~~~~~s~~g~~l~~~~~-dg~i~vwd~~~-~~~~~~--~~-----------~~~~~i~~~~~s~~~~~ 223 (406)
.+.... .......++++|++++|+++.. +|.|.++++.. +..... .. .......++.++|++++
T Consensus 78 ~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~ 157 (345)
T PF10282_consen 78 LLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRF 157 (345)
T ss_dssp EEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSE
T ss_pred EeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCE
Confidence 111122 2344567999999999998865 89999999976 332221 11 11226789999999998
Q ss_pred EEEEeC-CCCEEEEEcCCCe--e--eeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC--Cce--EEE
Q 015490 224 LVSLGN-RGPGRVWDLASSA--V--ATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT--TWK--RIR 294 (406)
Q Consensus 224 l~s~s~-d~~i~iwd~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~--~~~--~~~ 294 (406)
+++... ...|.+|++.... . ...+....+...+.+.|+|+++. +.+....++.|.++++. ++. .+.
T Consensus 158 v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~-----~Yv~~e~s~~v~v~~~~~~~g~~~~~~ 232 (345)
T PF10282_consen 158 VYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKY-----AYVVNELSNTVSVFDYDPSDGSLTEIQ 232 (345)
T ss_dssp EEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSE-----EEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCE-----EEEecCCCCcEEEEeecccCCceeEEE
Confidence 887643 3479999997654 2 22334445556789999999985 44556778999999887 443 222
Q ss_pred Eeeec------CCCeEEEEEcCCCCEEEEEeC-CCcEEEEECC--Cc--eEEEEeecccccceEEEEEcCCCCeEEEEE-
Q 015490 295 TKQVV------REPVSSFNVSADGKLLAVGTA-SGDISIIDSS--SL--QVRTAVKKAHLGIVTALAFSYDSRALVSAS- 362 (406)
Q Consensus 295 ~~~~~------~~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~--~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s- 362 (406)
..... ......+.++|||++|+++.. .+.|.+|++. ++ +.+..+. ......+.++++|+|++|+++.
T Consensus 233 ~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~-~~G~~Pr~~~~s~~g~~l~Va~~ 311 (345)
T PF10282_consen 233 TISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP-TGGKFPRHFAFSPDGRYLYVANQ 311 (345)
T ss_dssp EEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE-ESSSSEEEEEE-TTSSEEEEEET
T ss_pred EeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe-CCCCCccEEEEeCCCCEEEEEec
Confidence 22211 125788999999999998776 6789999993 23 3333333 2234478999999999998877
Q ss_pred CCCcEEEEEec
Q 015490 363 MDSSVRVTVIE 373 (406)
Q Consensus 363 ~dg~i~iw~~~ 373 (406)
.++.|.+|+++
T Consensus 312 ~s~~v~vf~~d 322 (345)
T PF10282_consen 312 DSNTVSVFDID 322 (345)
T ss_dssp TTTEEEEEEEE
T ss_pred CCCeEEEEEEe
Confidence 56789999885
No 207
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.70 E-value=1.1e-15 Score=126.62 Aligned_cols=202 Identities=18% Similarity=0.228 Sum_probs=158.6
Q ss_pred cCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc---eEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCC-Ce
Q 015490 167 VGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLE---IILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLAS-SA 242 (406)
Q Consensus 167 ~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~-~~ 242 (406)
..+|+|.+|++|+..+|++..+..|.||.....+ ....+..|...|+.++|+|..+.|++++.|..-++|.... ++
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 3689999999999999999999999999986554 5667778888999999999999999999999999999843 33
Q ss_pred eee--ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEE----EEeeecCCCeEEEEEcCCCCEEE
Q 015490 243 VAT--PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRI----RTKQVVREPVSSFNVSADGKLLA 316 (406)
Q Consensus 243 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~----~~~~~~~~~i~~~~~sp~~~~l~ 316 (406)
-.. .+. ......+++.|+|.++. ++.++....|.+|-.+....- ..-+.+...|.+++|+|++-+|+
T Consensus 90 WkptlvLl-RiNrAAt~V~WsP~enk------FAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLla 162 (361)
T KOG1523|consen 90 WKPTLVLL-RINRAATCVKWSPKENK------FAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLA 162 (361)
T ss_pred eccceeEE-EeccceeeEeecCcCce------EEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceec
Confidence 222 222 23456789999999985 566677788888776543321 12233457899999999999999
Q ss_pred EEeCCCcEEEEECCC------------------ceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490 317 VGTASGDISIIDSSS------------------LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKK 376 (406)
Q Consensus 317 ~~~~dg~i~i~d~~~------------------~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~ 376 (406)
+|+.|+..++|..-- |+...++. ...+.|..+.|+|+|..|+-.+.|+++.+-|...+.
T Consensus 163 aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 163 AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 999999999997521 12222332 356789999999999999999999999999987775
No 208
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=5.6e-15 Score=139.95 Aligned_cols=245 Identities=17% Similarity=0.256 Sum_probs=173.8
Q ss_pred CCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECC--CCCEEEEeeCCCe
Q 015490 114 DLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDS--EGTIFAAGSENGN 190 (406)
Q Consensus 114 ~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~~dg~ 190 (406)
.+...+.|+|-...++++. ...+++|+|.. ++....++.. ......|+.+.+-. |..++++|+.||.
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~--~~~l~~F~n~--------~~~~t~Vs~l~liNe~D~aLlLtas~dGv 1134 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEK--GRLLNGFDNG--------AFPDTRVSDLELINEQDDALLLTASSDGV 1134 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEeccc--CceeccccCC--------CCCCCccceeeeecccchhheeeeccCce
Confidence 3567788999988888886 55667777764 2322222210 01225688888865 4578999999999
Q ss_pred EEEEeCC-C----cceEeeeec-------cCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEE
Q 015490 191 LRVFKWP-S----LEIILNESE-------AHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASC 258 (406)
Q Consensus 191 i~vwd~~-~----~~~~~~~~~-------~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 258 (406)
|+||+-- + .+.+....+ ..+.=.-+.|.....+|+++++-..|+|||.........+.......++++
T Consensus 1135 IRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaL 1214 (1387)
T KOG1517|consen 1135 IRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTAL 1214 (1387)
T ss_pred EEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceee
Confidence 9999742 2 223322221 111113467877777888888888999999999998888887777777777
Q ss_pred EEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce---EEEEeeecCCC--eEEEEEcCCCCE-EEEEeCCCcEEEEECCCc
Q 015490 259 RFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK---RIRTKQVVREP--VSSFNVSADGKL-LAVGTASGDISIIDSSSL 332 (406)
Q Consensus 259 ~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~--i~~~~~sp~~~~-l~~~~~dg~i~i~d~~~~ 332 (406)
.-+-.+.. +++.|-.||.|++||.+... .+...+.|... |..+.+.+.|-- |++|+.+|.|++||++..
T Consensus 1215 S~~~~~gn-----~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1215 SADLVHGN-----IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred cccccCCc-----eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence 65554433 56777889999999998643 35666677665 999999987754 999999999999999874
Q ss_pred eEEEEee-cccc--c-ceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490 333 QVRTAVK-KAHL--G-IVTALAFSYDSRALVSASMDSSVRVTVIED 374 (406)
Q Consensus 333 ~~~~~~~-~~~~--~-~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~ 374 (406)
.....+. ..|. + ..+++..+++...+|+|+. +.|+||++..
T Consensus 1290 ~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1290 SKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG 1334 (1387)
T ss_pred cccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh
Confidence 2221111 1232 3 5899999999999999988 9999999854
No 209
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=4.3e-14 Score=132.03 Aligned_cols=201 Identities=14% Similarity=0.105 Sum_probs=137.5
Q ss_pred ccCcEEEEEECCCCCEEEEeeC---CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEE-EeCCCC--EEEEEcC
Q 015490 166 NVGQQLALTFDSEGTIFAAGSE---NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVS-LGNRGP--GRVWDLA 239 (406)
Q Consensus 166 ~~~~v~~~~~s~~g~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s-~s~d~~--i~iwd~~ 239 (406)
+...+.+.+|+|||+.|+..+. +..|++||+.+++.. .+......+...+|+|||+.|+. .+.++. |++||+.
T Consensus 200 ~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 278 (435)
T PRK05137 200 GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR 278 (435)
T ss_pred CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECC
Confidence 4567899999999998888754 468999999887654 34444556788999999998764 455554 7777988
Q ss_pred CCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEe
Q 015490 240 SSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGT 319 (406)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 319 (406)
+++... +.. +........|+|+++. +++.........|+++|+.+++. ..+..+...+....|+|||++|+...
T Consensus 279 ~~~~~~-Lt~-~~~~~~~~~~spDG~~---i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~ 352 (435)
T PRK05137 279 SGTTTR-LTD-SPAIDTSPSYSPDGSQ---IVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTK 352 (435)
T ss_pred CCceEE-ccC-CCCccCceeEcCCCCE---EEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEE
Confidence 776543 332 2234557899999986 22222123345799999877654 33433445567789999999998876
Q ss_pred CC---CcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECC------CcEEEEEecCCc
Q 015490 320 AS---GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMD------SSVRVTVIEDKK 376 (406)
Q Consensus 320 ~d---g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d------g~i~iw~~~~~~ 376 (406)
.+ ..|.+||+.++.. ..+. ....+..+.|+|||++|+..+.+ ..++++++..++
T Consensus 353 ~~~~~~~i~~~d~~~~~~-~~lt--~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 353 QGGGQFSIGVMKPDGSGE-RILT--SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred cCCCceEEEEEECCCCce-Eecc--CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 53 3588889865543 3333 22346788999999998765543 257777776543
No 210
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.69 E-value=2.6e-16 Score=130.76 Aligned_cols=229 Identities=15% Similarity=0.147 Sum_probs=157.5
Q ss_pred EEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEE-eeCCCeEEEEeC
Q 015490 118 RMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAA-GSENGNLRVFKW 196 (406)
Q Consensus 118 ~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~dg~i~vwd~ 196 (406)
-..|||+|+++++..+..+.|.+.. +. +..+.+..-+.|.-+.|..|..+++. ...++.|.+|++
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~--tl------------q~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl 78 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSE--TL------------QLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSL 78 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccc--hh------------hHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEe
Confidence 4689999999999987655554332 22 22222333456778899998866554 466889999999
Q ss_pred CCcceEeeeeccCCceeEEEEccCCCEEEEE-eCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEE
Q 015490 197 PSLEIILNESEAHASVKDLSFSPDGKFLVSL-GNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAI 275 (406)
Q Consensus 197 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (406)
...+-...+.....++.++.|||||+.|+.. .-+-.|.+|.+.+.+....- +....+..++|+|+++. .+..
T Consensus 79 ~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~--~pK~~~kg~~f~~dg~f-----~ai~ 151 (447)
T KOG4497|consen 79 VQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP--HPKTNVKGYAFHPDGQF-----CAIL 151 (447)
T ss_pred ecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec--ccccCceeEEECCCCce-----eeee
Confidence 9998888888888899999999999766655 45888999999876654432 22334578999999984 3333
Q ss_pred cCCCc--EEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCceEEEEeecccccceEEEEE
Q 015490 276 TDRGA--SIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA--SGDISIIDSSSLQVRTAVKKAHLGIVTALAF 351 (406)
Q Consensus 276 ~~~~~--~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 351 (406)
...|. .+.+.....+..++.+....-..+.+.|+|||+.||+-.. +-.|. .+. -.-.+..++|
T Consensus 152 sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~-----------aYe--~~lG~k~v~w 218 (447)
T KOG4497|consen 152 SRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY-----------AYE--RGLGLKFVEW 218 (447)
T ss_pred ecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee-----------eee--eccceeEEEe
Confidence 23332 1222223344455666666667789999999999886432 22222 221 2245778999
Q ss_pred cCCCCeEEEEECCCcEEEEEecCCcCCCC
Q 015490 352 SYDSRALVSASMDSSVRVTVIEDKKKSGG 380 (406)
Q Consensus 352 sp~~~~l~s~s~dg~i~iw~~~~~~~~~~ 380 (406)
+|.+++|+.|+.|+.+||-+--+=+..++
T Consensus 219 sP~~qflavGsyD~~lrvlnh~tWk~f~e 247 (447)
T KOG4497|consen 219 SPCNQFLAVGSYDQMLRVLNHFTWKPFGE 247 (447)
T ss_pred ccccceEEeeccchhhhhhceeeeeehhh
Confidence 99999999999999999877655444333
No 211
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=1.5e-14 Score=122.96 Aligned_cols=255 Identities=15% Similarity=0.178 Sum_probs=176.7
Q ss_pred cCCCCceEEEEccCCC--eEEEE-ecCCeEEEEEecccccceeecceeccceeeec-ccccCcEEEEEECCCCCEEEEee
Q 015490 111 TDSDLPYRMAIHPHGD--GIICA-LQNSCRLFEWDEVENTEIRRLGVKISEKVLSQ-LENVGQQLALTFDSEGTIFAAGS 186 (406)
Q Consensus 111 ~h~~~v~~~~~sp~~~--~l~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~~ 186 (406)
.....|.+++|.-++. .+... .+..+..+.+... .....+ ..+.. .-....|..+... | ..|++|-
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~--~~~s~~------~~~~~~~l~~~~I~gl~~~-d-g~Litc~ 122 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEF--EISSSL------DDAKTVSLGTKSIKGLKLA-D-GTLITCV 122 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCC--cccccc------ccccccccccccccchhhc-C-CEEEEEe
Confidence 3456778888876665 23333 2555555443321 111000 00000 1122445444443 3 3677888
Q ss_pred CCCeEEEEeCCCcc----eEeeeeccCCceeEEEEccCCC-EEEEEeCC--CCEEEEEcCCCeeeeecccC--------C
Q 015490 187 ENGNLRVFKWPSLE----IILNESEAHASVKDLSFSPDGK-FLVSLGNR--GPGRVWDLASSAVATPLAKE--------N 251 (406)
Q Consensus 187 ~dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~~s~~~~-~l~s~s~d--~~i~iwd~~~~~~~~~~~~~--------~ 251 (406)
.+|.+.+|....+. .+..+. ....+..+.-++... .+++|+.. ..+.+||+.+.+.+..-+.. -
T Consensus 123 ~sG~l~~~~~k~~d~hss~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrV 201 (412)
T KOG3881|consen 123 SSGNLQVRHDKSGDLHSSKLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRV 201 (412)
T ss_pred cCCcEEEEeccCCccccccceeee-cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCcccccee
Confidence 89999999987443 222222 234566677676555 45558888 78999999988655433321 1
Q ss_pred cceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc-eEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 015490 252 DELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW-KRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSS 330 (406)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~ 330 (406)
.-.++.+.|.+.... +.++++..-+.+++||.+.+ +++..+.....+++++...|++++|++|...|.+..||++
T Consensus 202 PvW~tdi~Fl~g~~~----~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r 277 (412)
T KOG3881|consen 202 PVWITDIRFLEGSPN----YKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLR 277 (412)
T ss_pred eeeeccceecCCCCC----ceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheeccc
Confidence 224667888887432 34566778899999999865 5688888888999999999999999999999999999999
Q ss_pred CceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCC
Q 015490 331 SLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGG 380 (406)
Q Consensus 331 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~ 380 (406)
.++.......+..+.|+++..+|.+++|++++.|..|||+|+++.+.+..
T Consensus 278 ~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 278 GGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred CceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence 99998884458999999999999999999999999999999999766443
No 212
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=4.5e-14 Score=131.13 Aligned_cols=196 Identities=14% Similarity=0.130 Sum_probs=134.3
Q ss_pred ccCcEEEEEECCCCCEEEEeeC---CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEE-eCCC--CEEEEEcC
Q 015490 166 NVGQQLALTFDSEGTIFAAGSE---NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSL-GNRG--PGRVWDLA 239 (406)
Q Consensus 166 ~~~~v~~~~~s~~g~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-s~d~--~i~iwd~~ 239 (406)
+...+...+|||||+.|+..+. +..|.+|++.+++... +......+..+.|+|||+.|+.. +.++ .|++||+.
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~ 275 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 275 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 4467889999999998887542 4579999998876432 22233345678999999988865 3344 48899998
Q ss_pred CCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCC--cEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEE
Q 015490 240 SSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRG--ASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAV 317 (406)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~ 317 (406)
+++....... ...+....|+|+++. ++.+...+ ..|+.+|+.+++. ..+...........|+|||++|+.
T Consensus 276 tg~~~~lt~~--~~~~~~~~wSPDG~~-----I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~ 347 (429)
T PRK03629 276 SGQIRQVTDG--RSNNTEPTWFPDSQN-----LAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVM 347 (429)
T ss_pred CCCEEEccCC--CCCcCceEECCCCCE-----EEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEE
Confidence 8766543332 234568899999985 32333333 3666778877654 334434445667899999999988
Q ss_pred EeCC---CcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCc---EEEEEec
Q 015490 318 GTAS---GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSS---VRVTVIE 373 (406)
Q Consensus 318 ~~~d---g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~---i~iw~~~ 373 (406)
.+.+ ..|.+||+.+++... +... .......|+|||++|+.++.++. +.++++.
T Consensus 348 ~~~~~g~~~I~~~dl~~g~~~~-Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 348 VSSNGGQQHIAKQDLATGGVQV-LTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred EEccCCCceEEEEECCCCCeEE-eCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 6653 358889998876443 3212 22346789999999999888765 6667764
No 213
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=1.8e-14 Score=133.87 Aligned_cols=209 Identities=20% Similarity=0.200 Sum_probs=134.5
Q ss_pred cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCC---CeEEEEeCCCcceEeeeeccC
Q 015490 133 QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSEN---GNLRVFKWPSLEIILNESEAH 209 (406)
Q Consensus 133 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~ 209 (406)
.+..+||.++... ...+. ...+...+.+.+|+|||+.|+..+.+ ..|++||+.+++... +....
T Consensus 173 ~~~~~L~~~D~dG-~~~~~-----------l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~ 239 (427)
T PRK02889 173 GNRYQLQISDADG-QNAQS-----------ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFK 239 (427)
T ss_pred CCccEEEEECCCC-CCceE-----------eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCC
Confidence 3456788877632 21111 12344678899999999999877643 469999998886543 33333
Q ss_pred CceeEEEEccCCCEEEE-EeCCCCEEEEE--cCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCc--EEEE
Q 015490 210 ASVKDLSFSPDGKFLVS-LGNRGPGRVWD--LASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGA--SIVT 284 (406)
Q Consensus 210 ~~i~~~~~s~~~~~l~s-~s~d~~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~i~~ 284 (406)
..+...+|+|||+.|+. .+.++...||. +.++. ...+..+ ........|+|+++. ++.....++ .|+.
T Consensus 240 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~-~~~~~~~~wSpDG~~-----l~f~s~~~g~~~Iy~ 312 (427)
T PRK02889 240 GSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQS-SGIDTEPFFSPDGRS-----IYFTSDRGGAPQIYR 312 (427)
T ss_pred CCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCC-CCCCcCeEEcCCCCE-----EEEEecCCCCcEEEE
Confidence 45678999999998874 56777766665 44443 3444332 233456889999986 222333333 4555
Q ss_pred EeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEE
Q 015490 285 WNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASG---DISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSA 361 (406)
Q Consensus 285 ~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~ 361 (406)
+++.+++. ..+...........|+|||++|+..+.++ .|.+||+.+++...... ......+.|+|||++|+.+
T Consensus 313 ~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~---~~~~~~p~~spdg~~l~~~ 388 (427)
T PRK02889 313 MPASGGAA-QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD---TTRDESPSFAPNGRYILYA 388 (427)
T ss_pred EECCCCce-EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC---CCCccCceECCCCCEEEEE
Confidence 56555543 22222333345689999999999877654 59999998877543322 2234678999999998877
Q ss_pred ECCC
Q 015490 362 SMDS 365 (406)
Q Consensus 362 s~dg 365 (406)
+.++
T Consensus 389 ~~~~ 392 (427)
T PRK02889 389 TQQG 392 (427)
T ss_pred EecC
Confidence 7554
No 214
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=2.1e-14 Score=133.86 Aligned_cols=197 Identities=21% Similarity=0.210 Sum_probs=134.5
Q ss_pred ccCcEEEEEECCCCCEEEEeeC---CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEE-EeCCC--CEEEEEcC
Q 015490 166 NVGQQLALTFDSEGTIFAAGSE---NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVS-LGNRG--PGRVWDLA 239 (406)
Q Consensus 166 ~~~~v~~~~~s~~g~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s-~s~d~--~i~iwd~~ 239 (406)
+...+.+.+|+|||+.|+..+. +..|++||+.+++... +........++.|+|||+.|+. .+.++ .|++||+.
T Consensus 202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~ 280 (433)
T PRK04922 202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLG 280 (433)
T ss_pred CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECC
Confidence 4467889999999999988764 3469999998876542 3333344567899999997764 45555 59999998
Q ss_pred CCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCC--cEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEE
Q 015490 240 SSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRG--ASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAV 317 (406)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~ 317 (406)
+++... +..+ .......+|+|+++. ++.+...+ ..|+++|+.+++.. .+..+......++|+|||++|+.
T Consensus 281 ~g~~~~-lt~~-~~~~~~~~~spDG~~-----l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~ 352 (433)
T PRK04922 281 SRQLTR-LTNH-FGIDTEPTWAPDGKS-----IYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAM 352 (433)
T ss_pred CCCeEE-CccC-CCCccceEECCCCCE-----EEEEECCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEE
Confidence 876543 3322 223457899999985 33333333 35888888776543 33333344557899999999988
Q ss_pred EeCCC---cEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECC---CcEEEEEecC
Q 015490 318 GTASG---DISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMD---SSVRVTVIED 374 (406)
Q Consensus 318 ~~~dg---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d---g~i~iw~~~~ 374 (406)
.+.++ .|.+||+.+++.. .+. +........|+|||++++..+.+ +.|.++++..
T Consensus 353 ~~~~~~~~~I~v~d~~~g~~~-~Lt--~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 353 VHGSGGQYRIAVMDLSTGSVR-TLT--PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred EECCCCceeEEEEECCCCCeE-ECC--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 76533 5999999887755 332 33345577999999988776653 3577777754
No 215
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.6e-14 Score=128.46 Aligned_cols=266 Identities=10% Similarity=0.130 Sum_probs=190.2
Q ss_pred cCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceec-----------------cceeeecc-------
Q 015490 111 TDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKI-----------------SEKVLSQL------- 164 (406)
Q Consensus 111 ~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~------- 164 (406)
+|+...+.|..+|||+|+++++ --.+++|++.....+..+.+.... ....+...
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 5778889999999999998877 566777776544322222211100 00000000
Q ss_pred --cccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCe
Q 015490 165 --ENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSA 242 (406)
Q Consensus 165 --~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~ 242 (406)
.-+..-..++++.-..-|++++....|+-++++.|..+..+....+.++++..++-..+|++|+.+|.|..||.++..
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS 208 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence 001112334444333334455555679999999999988887777899999999999999999999999999998876
Q ss_pred eeeecccC----------CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEee-ecCCCeEEEEEcCC
Q 015490 243 VATPLAKE----------NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQ-VVREPVSSFNVSAD 311 (406)
Q Consensus 243 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~i~~~~~sp~ 311 (406)
.+..+... ....++++.|+.+|- -++.|...|.+.+||+++.+++..-. ....+|..+.|.+.
T Consensus 209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL------~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 209 RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL------HVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT 282 (703)
T ss_pred hheeeecccccCCCccccccCcceEEEecCCce------eEEeeccCCcEEEEEcccCCceeecccCCccceeeeccccc
Confidence 65554321 123488999999875 46788889999999999988765443 22468889999775
Q ss_pred --CCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCchHHHHHH
Q 015490 312 --GKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLNLWIIIF 388 (406)
Q Consensus 312 --~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~ 388 (406)
++.+++ .....++|||-.+++....+. ....++.+++-|++.+++++-.++.+..|-+.. ++..|-|+.++
T Consensus 283 ~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiE--pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~---LGPaPrWCSfL 355 (703)
T KOG2321|consen 283 DQQNKVVS-MDKRILKIWDECTGKPMASIE--PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS---LGPAPRWCSFL 355 (703)
T ss_pred CCCceEEe-cchHHhhhcccccCCceeecc--ccCCcCceeeecCCceEEEecCCCcceeEEccc---cCCCchhhhHH
Confidence 344544 345678999999999998885 555699999999999999999999998888876 56688888554
No 216
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.67 E-value=3.2e-14 Score=132.02 Aligned_cols=234 Identities=17% Similarity=0.132 Sum_probs=159.5
Q ss_pred EEEEEecCCCCcc--ccceeEEecCCCCceEEEEccCCCe--EEEEe-cCCeEEEEEecccc-cceeecceeccceeeec
Q 015490 90 LLSHFDFASNSLS--DQPVAELRTDSDLPYRMAIHPHGDG--IICAL-QNSCRLFEWDEVEN-TEIRRLGVKISEKVLSQ 163 (406)
Q Consensus 90 ~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~sp~~~~--l~~~~-~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~ 163 (406)
.+..||....... ...-.....|..+|+.+.|-.+..- +++++ ||.+..|..+.... .+...... .......
T Consensus 266 qV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~--~~~~~~~ 343 (555)
T KOG1587|consen 266 QVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLES--KKHKGQQ 343 (555)
T ss_pred eEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccc--ccccccc
Confidence 5667776654442 2233345678999999999765443 66665 99988886654322 11111110 1111222
Q ss_pred ccccCcEEEEEECC-CCCEEEEeeCCCeEEEEeCC---Ccc-----eEeeeeccCCceeEEEEccCCCEEEEEeCCCCEE
Q 015490 164 LENVGQQLALTFDS-EGTIFAAGSENGNLRVFKWP---SLE-----IILNESEAHASVKDLSFSPDGKFLVSLGNRGPGR 234 (406)
Q Consensus 164 ~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~vwd~~---~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~ 234 (406)
......+++++|.+ +-..|++|+++|.|.--+-. ... .......|.+.|+++.++|=+..++..+.|-+++
T Consensus 344 ~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vr 423 (555)
T KOG1587|consen 344 SSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVR 423 (555)
T ss_pred cccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeE
Confidence 33446789999988 45789999999998873322 211 1224455667999999999776555555599999
Q ss_pred EEEcC-CCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc--eEEEEeeecCCCeEEEEEcCC
Q 015490 235 VWDLA-SSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW--KRIRTKQVVREPVSSFNVSAD 311 (406)
Q Consensus 235 iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~i~~~~~sp~ 311 (406)
||... ...++..+.. +...+++++|||.... +.++++.+|.|.+||+... .++.+..........+.|+++
T Consensus 424 iWs~~~~~~Pl~~~~~-~~~~v~~vaWSptrpa-----vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~ 497 (555)
T KOG1587|consen 424 IWSEDVIASPLLSLDS-SPDYVTDVAWSPTRPA-----VFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPN 497 (555)
T ss_pred eccccCCCCcchhhhh-ccceeeeeEEcCcCce-----EEEEEcCCCceehhhhhccccCCcccccccccccceeecCCC
Confidence 99987 5555555543 3345899999999885 6677789999999998643 345555445566778889999
Q ss_pred CCEEEEEeCCCcEEEEECCC
Q 015490 312 GKLLAVGTASGDISIIDSSS 331 (406)
Q Consensus 312 ~~~l~~~~~dg~i~i~d~~~ 331 (406)
|+.|++|...|++++|++..
T Consensus 498 g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 498 GKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CcEEEEecCCCcEEEEEcCc
Confidence 99999999999999999963
No 217
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=2.1e-15 Score=133.37 Aligned_cols=218 Identities=16% Similarity=0.192 Sum_probs=154.8
Q ss_pred ceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECC--CCCEE
Q 015490 105 PVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDS--EGTIF 182 (406)
Q Consensus 105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l 182 (406)
...++.||++.|.|++|+.+|.+|++|+|.. ++..|+.-..+....+.. .|...|.++.|-| +.+++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~-r~ivWd~~~~KllhsI~T----------gHtaNIFsvKFvP~tnnriv 110 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDT-RLIVWDPFEYKLLHSIST----------GHTANIFSVKFVPYTNNRIV 110 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcc-eEEeecchhcceeeeeec----------ccccceeEEeeeccCCCeEE
Confidence 4457899999999999999999999997443 555566554444333322 2558899999999 45789
Q ss_pred EEeeCCCeEEEEeCCCc----------ceEeeeeccCCceeEEEEccCC-CEEEEEeCCCCEEEEEcCCCeeee------
Q 015490 183 AAGSENGNLRVFKWPSL----------EIILNESEAHASVKDLSFSPDG-KFLVSLGNRGPGRVWDLASSAVAT------ 245 (406)
Q Consensus 183 ~~~~~dg~i~vwd~~~~----------~~~~~~~~~~~~i~~~~~s~~~-~~l~s~s~d~~i~iwd~~~~~~~~------ 245 (406)
++|+.|..|++||+... +....+..|...|..++-.|++ ..+.+++.||+|+-+|++......
T Consensus 111 ~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~ 190 (758)
T KOG1310|consen 111 LSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCP 190 (758)
T ss_pred EeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccccc
Confidence 99999999999999742 2333445566688889999988 789999999999999998632211
Q ss_pred -eccc--CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc--------e----------EEEEee-ec----
Q 015490 246 -PLAK--ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW--------K----------RIRTKQ-VV---- 299 (406)
Q Consensus 246 -~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~--------~----------~~~~~~-~~---- 299 (406)
.+.. ..--...++..+|...+ +++.|+.+...++||.+.. + ++.-+. +|
T Consensus 191 ~~l~ny~~~lielk~ltisp~rp~-----~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~ 265 (758)
T KOG1310|consen 191 SILVNYNPQLIELKCLTISPSRPY-----YLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNS 265 (758)
T ss_pred HHHHHhchhhheeeeeeecCCCCc-----eEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCc
Confidence 1110 11123568999999986 6788889999999995421 1 111111 11
Q ss_pred C-------CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEe
Q 015490 300 R-------EPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAV 338 (406)
Q Consensus 300 ~-------~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 338 (406)
. ..++-+.|+|+|.-|++.-..-.|+++|+..++....+
T Consensus 266 ~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 266 QGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred ccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 0 12566789999988887766678999999877655444
No 218
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=4.1e-14 Score=134.28 Aligned_cols=255 Identities=16% Similarity=0.153 Sum_probs=168.6
Q ss_pred CCCceEEEEccCC--CeEEEEe-cCCeEEEEEecccccceeecceeccceeee-ccccc-CcEEEEEECCCCCEEEEeeC
Q 015490 113 SDLPYRMAIHPHG--DGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLS-QLENV-GQQLALTFDSEGTIFAAGSE 187 (406)
Q Consensus 113 ~~~v~~~~~sp~~--~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~v~~~~~s~~g~~l~~~~~ 187 (406)
...|+.+.+-.+. ..+++++ ||.++||.=-....+....+.. -..+. ..... +.-.-+.|.....+|++++.
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTa---w~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd 1185 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTA---WSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD 1185 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEe---eccccccCccCCCCCeeeehhhhCCeEEecCC
Confidence 3567888875533 3555555 9999998633221111111100 00000 01111 11144678876666666666
Q ss_pred CCeEEEEeCCCcceEeeeeccCC-ceeEEEEcc-CCCEEEEEeCCCCEEEEEcCCCee---eeecccCCcc-eEEEEEEE
Q 015490 188 NGNLRVFKWPSLEIILNESEAHA-SVKDLSFSP-DGKFLVSLGNRGPGRVWDLASSAV---ATPLAKENDE-LFASCRFS 261 (406)
Q Consensus 188 dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~-~~~~l~s~s~d~~i~iwd~~~~~~---~~~~~~~~~~-~~~~~~~~ 261 (406)
-..|+|||.........+..... .|+++.-+- .|+.+++|..||.+++||.+.... +.....|... .|..+.+.
T Consensus 1186 ~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq 1265 (1387)
T KOG1517|consen 1186 VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQ 1265 (1387)
T ss_pred eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEee
Confidence 78999999998888777765544 677766533 478999999999999999886543 2333333221 27788888
Q ss_pred cCCCCceEEEEEEEcCCCcEEEEEeCCCceEEE--Eeeec---CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEE
Q 015490 262 PLNNEDYVLYIAAITDRGASIVTWNTTTWKRIR--TKQVV---REPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRT 336 (406)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~--~~~~~---~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~ 336 (406)
+.|-. -+++++.+|.|++||++...... +...| ++..+++..++....+|+|+. +.|.||++.. +.+.
T Consensus 1266 ~~G~~-----elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~ 1338 (1387)
T KOG1517|consen 1266 RQGLG-----ELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLN 1338 (1387)
T ss_pred cCCCc-----ceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhc
Confidence 87753 35778899999999999842222 22222 235899999999999999998 9999999863 3333
Q ss_pred Eee------cccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490 337 AVK------KAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK 377 (406)
Q Consensus 337 ~~~------~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~ 377 (406)
.+. ....+.+.+++|+|.--++++|+.|.+|.||....+..
T Consensus 1339 ~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1339 IIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPRL 1385 (1387)
T ss_pred ccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcCC
Confidence 332 12235678999999988899999999999999876643
No 219
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=5.2e-15 Score=131.33 Aligned_cols=228 Identities=11% Similarity=0.113 Sum_probs=158.5
Q ss_pred CccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccc-cCcEEEEEECC
Q 015490 100 SLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN-VGQQLALTFDS 177 (406)
Q Consensus 100 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~ 177 (406)
....+++.++++|.++|.|++..+++..+++|+ |++++.|++... ........ .......+.+ .+.++.+++|+
T Consensus 331 ~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n-~dp~ds~d---p~vl~~~l~Ghtdavw~l~~s~ 406 (577)
T KOG0642|consen 331 EKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPN-QDPDDSYD---PSVLSGTLLGHTDAVWLLALSS 406 (577)
T ss_pred ccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCC-CCcccccC---cchhccceeccccceeeeeecc
Confidence 444579999999999999999999999999998 999999976522 11100000 1112223334 47889999999
Q ss_pred CCCEEEEeeCCCeEEEEeCCCcceEeeeec--cCCceeEEEEccCC-CEEEEEeCCCCEEEEEcCCCeeeeecccC----
Q 015490 178 EGTIFAAGSENGNLRVFKWPSLEIILNESE--AHASVKDLSFSPDG-KFLVSLGNRGPGRVWDLASSAVATPLAKE---- 250 (406)
Q Consensus 178 ~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~i~~~~~s~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~---- 250 (406)
....|++++.||+++.|+...... ..+.. .++--.++.+-... .+.++...-+.-.++++........+...
T Consensus 407 ~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~ 485 (577)
T KOG0642|consen 407 TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPG 485 (577)
T ss_pred cccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCc
Confidence 988999999999999999765544 22222 22233455553222 12222222333334444444333333211
Q ss_pred --CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 015490 251 --NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIID 328 (406)
Q Consensus 251 --~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d 328 (406)
....+..+.++|... +..++..++.|+++|..+++.+.....|...++++++.|+|-+|++++.|+.+++|.
T Consensus 486 ~~~~~~in~vVs~~~~~------~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 486 PRRYPQINKVVSHPTAD------ITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred ccccCccceEEecCCCC------eeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhh
Confidence 112355677888876 566778999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEe
Q 015490 329 SSSLQVRTAV 338 (406)
Q Consensus 329 ~~~~~~~~~~ 338 (406)
+....++...
T Consensus 560 ld~k~~~~es 569 (577)
T KOG0642|consen 560 LDVKTCVLES 569 (577)
T ss_pred ccchheeecc
Confidence 9776665554
No 220
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=4.2e-13 Score=124.24 Aligned_cols=242 Identities=16% Similarity=0.155 Sum_probs=147.8
Q ss_pred EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEE---EEe-cCCeEEEEEecccccceeecceeccceeeeccc
Q 015490 90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGII---CAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE 165 (406)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~---~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (406)
.++..+.+.. ..+.+..+.....+-+|+|||+.++ ++. ++.-.||..+...++... +..
T Consensus 166 ~l~~~d~dG~-----~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----------lt~-- 228 (428)
T PRK01029 166 ELWSVDYDGQ-----NLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----------ILA-- 228 (428)
T ss_pred eEEEEcCCCC-----CceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----------eec--
Confidence 5666665542 2234444566677889999998632 333 566789988876543221 111
Q ss_pred ccCcEEEEEECCCCCEEEEeeC-----CCeEEEEeCCCc--ceEeeeeccC-CceeEEEEccCCCEEEEEe-CCCCEEEE
Q 015490 166 NVGQQLALTFDSEGTIFAAGSE-----NGNLRVFKWPSL--EIILNESEAH-ASVKDLSFSPDGKFLVSLG-NRGPGRVW 236 (406)
Q Consensus 166 ~~~~v~~~~~s~~g~~l~~~~~-----dg~i~vwd~~~~--~~~~~~~~~~-~~i~~~~~s~~~~~l~s~s-~d~~i~iw 236 (406)
..+.....+|||||+.|+..+. +..+..|++..+ .....+.... ......+|+|||+.|+..+ .++...+|
T Consensus 229 ~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly 308 (428)
T PRK01029 229 LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIY 308 (428)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEE
Confidence 2233456799999988886543 223444676653 1222333222 3446789999999888776 45655555
Q ss_pred --EcCC-CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCC
Q 015490 237 --DLAS-SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGK 313 (406)
Q Consensus 237 --d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~ 313 (406)
++.. +.....+... ...+....|+|+++. ++++........|++||+.+++... +......+....|+|||+
T Consensus 309 ~~~~~~~g~~~~~lt~~-~~~~~~p~wSPDG~~---Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~ 383 (428)
T PRK01029 309 IMQIDPEGQSPRLLTKK-YRNSSCPAWSPDGKK---IAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSL 383 (428)
T ss_pred EEECcccccceEEeccC-CCCccceeECCCCCE---EEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCC
Confidence 4432 2223333322 234557899999985 2222222234689999999876543 333334567899999999
Q ss_pred EEEEEeC---CCcEEEEECCCceEEEEeecccccceEEEEEcCCC
Q 015490 314 LLAVGTA---SGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDS 355 (406)
Q Consensus 314 ~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~ 355 (406)
+|+.... ...|+++|+.+++...... ..+.+...+|+|-.
T Consensus 384 ~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~--~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 384 HLVYSAGNSNESELYLISLITKKTRKIVI--GSGEKRFPSWGAFP 426 (428)
T ss_pred EEEEEECCCCCceEEEEECCCCCEEEeec--CCCcccCceecCCC
Confidence 8886543 3568899998776554442 44567788898753
No 221
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=5.3e-13 Score=124.90 Aligned_cols=238 Identities=16% Similarity=0.149 Sum_probs=151.4
Q ss_pred EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeeccccc
Q 015490 90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV 167 (406)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (406)
.++.++.+.. ....+..+...+...+|+|||+.|+..+ ++...||.++..+++... +.. ..
T Consensus 180 ~l~~~d~~g~-----~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----------l~~--~~ 242 (430)
T PRK00178 180 TLQRSDYDGA-----RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----------ITN--FE 242 (430)
T ss_pred EEEEECCCCC-----CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----------ccC--CC
Confidence 5666666542 3445666778899999999999998776 344578888876543211 111 12
Q ss_pred CcEEEEEECCCCCEEEE-eeCCC--eEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeC-CC--CEEEEEcCCC
Q 015490 168 GQQLALTFDSEGTIFAA-GSENG--NLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGN-RG--PGRVWDLASS 241 (406)
Q Consensus 168 ~~v~~~~~s~~g~~l~~-~~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~-d~--~i~iwd~~~~ 241 (406)
+.+....|+|||+.|+. .+.+| .|++||+.+++.. .+..+........|+|||+.|+..+. ++ .|+++|+.++
T Consensus 243 g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 243 GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 33456899999988874 44444 6888899887654 34444445677899999998877664 33 5777788777
Q ss_pred eeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCC
Q 015490 242 AVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAS 321 (406)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d 321 (406)
+....... ........|+|+++. +++.........|.++|+.+++. ..+... .......|+|||+.++..+.+
T Consensus 322 ~~~~lt~~--~~~~~~~~~Spdg~~---i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~-~~~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 322 RAERVTFV--GNYNARPRLSADGKT---LVMVHRQDGNFHVAAQDLQRGSV-RILTDT-SLDESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred CEEEeecC--CCCccceEECCCCCE---EEEEEccCCceEEEEEECCCCCE-EEccCC-CCCCCceECCCCCEEEEEEec
Confidence 64332211 122335789999985 22222222234688999988764 333322 223467899999999887653
Q ss_pred ---CcEEEEECCCceEEEEeecccccceEEEEEcCC
Q 015490 322 ---GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYD 354 (406)
Q Consensus 322 ---g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~ 354 (406)
..+.++++.. .....+. .+.+.+...+|+|-
T Consensus 395 ~g~~~l~~~~~~g-~~~~~l~-~~~g~~~~p~ws~~ 428 (430)
T PRK00178 395 QGRGVLMLVSING-RVRLPLP-TAQGEVREPSWSPY 428 (430)
T ss_pred CCceEEEEEECCC-CceEECc-CCCCCcCCCccCCC
Confidence 3477777753 3344443 45566777888873
No 222
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=2.3e-13 Score=127.13 Aligned_cols=157 Identities=17% Similarity=0.174 Sum_probs=116.4
Q ss_pred ceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEe
Q 015490 116 PYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFK 195 (406)
Q Consensus 116 v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd 195 (406)
..++.+++.|.+....-...+.+|.....+ +.. ...-....|.-.++|.++||+++++|+|..||.|.+|.
T Consensus 163 ~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~-~~~--------~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~ 233 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVHMCKIHIYFVPKHT-KHT--------SSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWR 233 (792)
T ss_pred CccEEEcCCceEEEEEEeeeEEEEEecccc-eee--------ccchhhhhhcccceeEEeccccceEEEeccCCcEEEEe
Confidence 578899999988877776666776665432 110 00111223344589999999999999999999999997
Q ss_pred CCC--c--ceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEE
Q 015490 196 WPS--L--EIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271 (406)
Q Consensus 196 ~~~--~--~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 271 (406)
--. + .....+.=|+..|.+++|+++|.+|++|+.++.+.+|.+.+++ +++...-+.++..+.++|++.. +
T Consensus 234 d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~----~ 307 (792)
T KOG1963|consen 234 DFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDL----Y 307 (792)
T ss_pred ccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCe----E
Confidence 422 1 2334455678899999999999999999999999999999988 5555556778999999999984 2
Q ss_pred EEEEcCCCcEEEEEeCCC
Q 015490 272 IAAITDRGASIVTWNTTT 289 (406)
Q Consensus 272 ~~~~~~~~~~i~~~d~~~ 289 (406)
+....|..|.+....+
T Consensus 308 --sl~~~DNqI~li~~~d 323 (792)
T KOG1963|consen 308 --SLVLEDNQIHLIKASD 323 (792)
T ss_pred --EEEecCceEEEEeccc
Confidence 2234588888887654
No 223
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.62 E-value=3.4e-14 Score=125.54 Aligned_cols=176 Identities=18% Similarity=0.282 Sum_probs=127.2
Q ss_pred CCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeeccee--------------cc-ceeeecccccCcEEEEEE
Q 015490 113 SDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVK--------------IS-EKVLSQLENVGQQLALTF 175 (406)
Q Consensus 113 ~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~~~~v~~~~~ 175 (406)
...|+|+.|-|.++.++... ++.+.+|+.....+......... .. ....+..-..+.|+..+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 37899999999777655554 77666665433222111111000 00 111112223467889999
Q ss_pred CCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceE
Q 015490 176 DSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELF 255 (406)
Q Consensus 176 s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~ 255 (406)
+|||++||+.+.||.++|||+.+.+.+.....--+...|++|||||++|++|++|.-|.||.+..++.+..=.+ |...|
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqG-HkSWV 377 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQG-HKSWV 377 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccc-cccce
Confidence 99999999999999999999999887766666667899999999999999999999999999998888877654 45678
Q ss_pred EEEEEEcCC-------------------------------CCce-----------EEEEEEEcCCCcEEEEEeCCC
Q 015490 256 ASCRFSPLN-------------------------------NEDY-----------VLYIAAITDRGASIVTWNTTT 289 (406)
Q Consensus 256 ~~~~~~~~~-------------------------------~~~~-----------~l~~~~~~~~~~~i~~~d~~~ 289 (406)
..++|.|.. .... +.|-+.+.+.|..+.+||+..
T Consensus 378 s~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlte 453 (636)
T KOG2394|consen 378 SVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTE 453 (636)
T ss_pred eeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecch
Confidence 888887421 1111 556677888999999999864
No 224
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=6.7e-14 Score=117.98 Aligned_cols=197 Identities=16% Similarity=0.137 Sum_probs=141.9
Q ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeecc-CCceeEEEEccCCC-EEEEEeCCCCEEEEEcCCC----
Q 015490 168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEA-HASVKDLSFSPDGK-FLVSLGNRGPGRVWDLASS---- 241 (406)
Q Consensus 168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~---- 241 (406)
..+..++|++.-..+|++..|..|++|+-.. ++...+... ...|++++|-|.+. .|+.++ .+.|.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCcccccc
Confidence 4577899999777788999999999999765 444444433 33899999999755 455555 456999976421
Q ss_pred e--------eeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCC
Q 015490 242 A--------VATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGK 313 (406)
Q Consensus 242 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~ 313 (406)
+ ....+.......|+++.|.+++.. ++.+.-.+..|.+||..++..+.-.....+.++-+.|||||.
T Consensus 177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~-----l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd 251 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTI-----LVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGD 251 (445)
T ss_pred cccccccccchhheeCCCCceeeEEEEcCCCCE-----EeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCC
Confidence 1 112233334467999999999985 455556789999999999876655544457788999999999
Q ss_pred EEEEEeCCCcEEEEECC-CceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490 314 LLAVGTASGDISIIDSS-SLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED 374 (406)
Q Consensus 314 ~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~ 374 (406)
+|++++-|+..++|+.. +....+-. -..+.|...+|+|+|++|+-... |.-++|.+.-
T Consensus 252 ~lfaAt~davfrlw~e~q~wt~erw~--lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f 310 (445)
T KOG2139|consen 252 VLFAATCDAVFRLWQENQSWTKERWI--LGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTF 310 (445)
T ss_pred EEEEecccceeeeehhcccceeccee--ccCCceeeeeecCCCCEEEEEEc-CCceEEEEee
Confidence 99999999999999554 33333333 24558999999999998765443 3345666643
No 225
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.62 E-value=1.5e-13 Score=112.79 Aligned_cols=158 Identities=15% Similarity=0.222 Sum_probs=111.5
Q ss_pred EEEEECCCCCEEEEeeC----------CCeEEEEeCCCc-ceEeeeec-cCCceeEEEEccCCCEEEEEe--CCCCEEEE
Q 015490 171 LALTFDSEGTIFAAGSE----------NGNLRVFKWPSL-EIILNESE-AHASVKDLSFSPDGKFLVSLG--NRGPGRVW 236 (406)
Q Consensus 171 ~~~~~s~~g~~l~~~~~----------dg~i~vwd~~~~-~~~~~~~~-~~~~i~~~~~s~~~~~l~s~s--~d~~i~iw 236 (406)
..+.|+++|.+|++-.. -+...+|.++.. .....+.- ..++|.+++|+|+|+.|++.. .++.+.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 35789999987765433 134555655322 23333322 334799999999999876653 56799999
Q ss_pred EcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEE
Q 015490 237 DLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLA 316 (406)
Q Consensus 237 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~ 316 (406)
|++ ++.+..+.. .....+.|+|+|+. +++...+...|.|.+||.++.+.+..... ..++.++|+|||++++
T Consensus 89 d~~-~~~i~~~~~---~~~n~i~wsP~G~~---l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 89 DVK-GKKIFSFGT---QPRNTISWSPDGRF---LVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLA 159 (194)
T ss_pred cCc-ccEeEeecC---CCceEEEECCCCCE---EEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEE
Confidence 996 666666642 34568999999995 32333345568999999999888877653 3478999999999999
Q ss_pred EEeC------CCcEEEEECCCceEEEEe
Q 015490 317 VGTA------SGDISIIDSSSLQVRTAV 338 (406)
Q Consensus 317 ~~~~------dg~i~i~d~~~~~~~~~~ 338 (406)
++.. |+.++||+.. |+.+...
T Consensus 160 ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 160 TATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEEeccceeccccEEEEEec-CeEeEec
Confidence 9874 6789999985 6655544
No 226
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=6.8e-15 Score=130.20 Aligned_cols=206 Identities=16% Similarity=0.177 Sum_probs=147.1
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeee-ccCCceeEEEEcc--CCCEEEEEeCCCCEEEEEcCCCe
Q 015490 166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNES-EAHASVKDLSFSP--DGKFLVSLGNRGPGRVWDLASSA 242 (406)
Q Consensus 166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~~~~s~--~~~~l~s~s~d~~i~iwd~~~~~ 242 (406)
|.+.|+|+.|+.+|.+|++|+.|-.+.|||.-..+.+..+. +|...|.++.|-| +.+.+++|..|..|+++|+...+
T Consensus 49 H~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~ 128 (758)
T KOG1310|consen 49 HTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSK 128 (758)
T ss_pred ccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccccc
Confidence 44889999999999999999999999999998777666654 5556999999988 45689999999999999997522
Q ss_pred ----------eeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEE-E---------EeeecCCC
Q 015490 243 ----------VATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRI-R---------TKQVVREP 302 (406)
Q Consensus 243 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~-~---------~~~~~~~~ 302 (406)
....+. -+...+..++-.|++.+ ++-++++||+|+-+|++....- . .+...--.
T Consensus 129 ~~~~d~~~~~~~~~~~-cht~rVKria~~p~~Ph-----tfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 129 EGGMDHGMEETTRCWS-CHTDRVKRIATAPNGPH-----TFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ccccccCccchhhhhh-hhhhhhhheecCCCCCc-----eEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 111222 23445777888899876 4456689999999999863211 0 01111124
Q ss_pred eEEEEEcC-CCCEEEEEeCCCcEEEEECCC--------ce----------EEEEeecccc-----------cceEEEEEc
Q 015490 303 VSSFNVSA-DGKLLAVGTASGDISIIDSSS--------LQ----------VRTAVKKAHL-----------GIVTALAFS 352 (406)
Q Consensus 303 i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~--------~~----------~~~~~~~~~~-----------~~v~~~~~s 352 (406)
..++..+| +..+|++|+.|-..++||.+. +. ++..+..+|. ..++-+.|+
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn 282 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN 282 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence 57888999 456899999999999999431 11 1222222332 125677899
Q ss_pred CCCCeEEEEECCCcEEEEEecCCcC
Q 015490 353 YDSRALVSASMDSSVRVTVIEDKKK 377 (406)
Q Consensus 353 p~~~~l~s~s~dg~i~iw~~~~~~~ 377 (406)
|+|.-|+..-..-.|+++|+..++.
T Consensus 283 pNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 283 PNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred CCCcEEEEeeCCeEEEEEeecCCCC
Confidence 9997766554445799999988765
No 227
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=8e-13 Score=123.35 Aligned_cols=225 Identities=19% Similarity=0.182 Sum_probs=144.2
Q ss_pred eEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEE
Q 015490 107 AELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAA 184 (406)
Q Consensus 107 ~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 184 (406)
+.+..+...+.+..|+|||+.|+... ++...||.++..+++... +..+ .+.....+|+|||+.|+.
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----------lt~~--~g~~~~~~wSPDG~~La~ 278 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----------VTSF--PGINGAPRFSPDGKKLAL 278 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----------ecCC--CCCcCCeeECCCCCEEEE
Confidence 34556677889999999999998775 456688888876543211 1111 122346799999997765
Q ss_pred -eeCCCe--EEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeC-CC--CEEEEEcCCCeeeeecccCCcceEEEE
Q 015490 185 -GSENGN--LRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGN-RG--PGRVWDLASSAVATPLAKENDELFASC 258 (406)
Q Consensus 185 -~~~dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~ 258 (406)
.+.+|. |+++|+.+++.. .+..+.......+|+|||+.|+..+. ++ .|+++|+.+++...... . .......
T Consensus 279 ~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~-~-g~~~~~~ 355 (448)
T PRK04792 279 VLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF-E-GEQNLGG 355 (448)
T ss_pred EEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec-C-CCCCcCe
Confidence 455664 888888877644 34444445678899999998877664 33 46677887776443221 1 1122357
Q ss_pred EEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCC-C--cEEEEECCCceEE
Q 015490 259 RFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAS-G--DISIIDSSSLQVR 335 (406)
Q Consensus 259 ~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-g--~i~i~d~~~~~~~ 335 (406)
+|+|+++. +++.........|.++|+.+++.. .+... .......|+|||+.|+..+.+ + .+++++. ++...
T Consensus 356 ~~SpDG~~---l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~ 429 (448)
T PRK04792 356 SITPDGRS---MIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFK 429 (448)
T ss_pred eECCCCCE---EEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCce
Confidence 89999985 322222223346777898887643 23222 122356899999988876653 3 3777787 45555
Q ss_pred EEeecccccceEEEEEcC
Q 015490 336 TAVKKAHLGIVTALAFSY 353 (406)
Q Consensus 336 ~~~~~~~~~~v~~~~~sp 353 (406)
..+. .+.+.+...+|+|
T Consensus 430 ~~l~-~~~g~~~~p~Wsp 446 (448)
T PRK04792 430 ARLP-AGQGEVKSPAWSP 446 (448)
T ss_pred EECc-CCCCCcCCCccCC
Confidence 5554 4566678888887
No 228
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.62 E-value=2.6e-13 Score=130.83 Aligned_cols=263 Identities=14% Similarity=0.135 Sum_probs=182.1
Q ss_pred ccceeEEecCCCCceEEEEccCC-CeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCC
Q 015490 103 DQPVAELRTDSDLPYRMAIHPHG-DGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEG 179 (406)
Q Consensus 103 ~~~~~~~~~h~~~v~~~~~sp~~-~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g 179 (406)
...+..+..|...|..++.++.. .++++|+ ||++++|+.....++.. ..+...++. ....+.++...+.+
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~-------s~rS~ltys~~~sr~~~vt~~~~~ 1110 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGG-------SARSELTYSPEGSRVEKVTMCGNG 1110 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcc-------eeeeeEEEeccCCceEEEEeccCC
Confidence 35677888999999999988766 8888887 99999998765443311 122222333 45788999999999
Q ss_pred CEEEEeeCCCeEEEEeCCCc--c-----eEeeeeccC-Cc-eeEEEEcc-CCC-EEEEEeCCCCEEEEEcCCCeeeeecc
Q 015490 180 TIFAAGSENGNLRVFKWPSL--E-----IILNESEAH-AS-VKDLSFSP-DGK-FLVSLGNRGPGRVWDLASSAVATPLA 248 (406)
Q Consensus 180 ~~l~~~~~dg~i~vwd~~~~--~-----~~~~~~~~~-~~-i~~~~~s~-~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~ 248 (406)
..+|+++.||.|++.+++.. . +......+. +. |..-++.. ++. .++.+..-+.|..||++.......++
T Consensus 1111 ~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk 1190 (1431)
T KOG1240|consen 1111 DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLK 1190 (1431)
T ss_pred CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhh
Confidence 99999999999999998652 1 111111111 22 33333432 233 78888889999999998876655554
Q ss_pred c-CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeee-cCCCeEEEEEcCC---CCEEEEEeC--C
Q 015490 249 K-ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV-VREPVSSFNVSAD---GKLLAVGTA--S 321 (406)
Q Consensus 249 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~i~~~~~sp~---~~~l~~~~~--d 321 (406)
. ...+.+++++.+|.+. +++.|...|.+.+||++-+.++..... +..++..+..+|- ....++++. .
T Consensus 1191 ~~~~hG~vTSi~idp~~~------WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ 1264 (1431)
T KOG1240|consen 1191 NQLRHGLVTSIVIDPWCN------WLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSN 1264 (1431)
T ss_pred cCccccceeEEEecCCce------EEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCC
Confidence 3 2345689999999987 567788899999999998887776643 3467788887763 345555444 6
Q ss_pred CcEEEEECCCceEEEEeecc------------------cccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCC
Q 015490 322 GDISIIDSSSLQVRTAVKKA------------------HLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKS 378 (406)
Q Consensus 322 g~i~i~d~~~~~~~~~~~~~------------------~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~ 378 (406)
+.|.+|++.++.....+... +.-......+..-+..+.+|+.|..|+.||...++..
T Consensus 1265 nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1265 NEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred CceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 78999999988766655422 0111122233333567899999999999999887765
No 229
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.61 E-value=2.4e-11 Score=109.85 Aligned_cols=274 Identities=16% Similarity=0.201 Sum_probs=166.7
Q ss_pred CCCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEec
Q 015490 66 IRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDE 143 (406)
Q Consensus 66 ~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~ 143 (406)
.++++.++++...+ .....+..+.++.+...+ ..+.+..........++++|++++|+++. ++.+.++.++.
T Consensus 45 ~~~~~~LY~~~e~~----~~~g~v~~~~i~~~~g~L--~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~ 118 (345)
T PF10282_consen 45 SPDGRRLYVVNEGS----GDSGGVSSYRIDPDTGTL--TLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDD 118 (345)
T ss_dssp -TTSSEEEEEETTS----STTTEEEEEEEETTTTEE--EEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EeCCCEEEEEEccc----cCCCCEEEEEECCCccee--EEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccC
Confidence 34667777664432 123466777777764333 34445544556778999999999999986 67777777665
Q ss_pred ccccceeecc-eeccceeee-cccccCcEEEEEECCCCCEEEEeeC-CCeEEEEeCCCcc--eE--eeee-ccCCceeEE
Q 015490 144 VENTEIRRLG-VKISEKVLS-QLENVGQQLALTFDSEGTIFAAGSE-NGNLRVFKWPSLE--II--LNES-EAHASVKDL 215 (406)
Q Consensus 144 ~~~~~~~~~~-~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~vwd~~~~~--~~--~~~~-~~~~~i~~~ 215 (406)
. +....... ......-.. .-+......++.|+|||+++++... ...|.+|+++... .. ..+. ......+.+
T Consensus 119 ~-g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~ 197 (345)
T PF10282_consen 119 D-GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHL 197 (345)
T ss_dssp T-SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEE
T ss_pred C-cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEE
Confidence 3 22111110 000000000 0112356789999999998887633 4589999997654 21 1222 223368999
Q ss_pred EEccCCCEEEEEe-CCCCEEEEEcC--CCee--eeecc---c--CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEE
Q 015490 216 SFSPDGKFLVSLG-NRGPGRVWDLA--SSAV--ATPLA---K--ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTW 285 (406)
Q Consensus 216 ~~s~~~~~l~s~s-~d~~i~iwd~~--~~~~--~~~~~---~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ 285 (406)
+|+|+++++++.. .++.|.++++. ++.. ...+. . ........++++|+++. +.++......|.+|
T Consensus 198 ~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~-----lyvsnr~~~sI~vf 272 (345)
T PF10282_consen 198 AFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRF-----LYVSNRGSNSISVF 272 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSE-----EEEEECTTTEEEEE
T ss_pred EEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCE-----EEEEeccCCEEEEE
Confidence 9999999887765 46789999987 4432 12111 1 11124678999999995 55666778899999
Q ss_pred eCC--Cc--eEEEEeeecCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEC--CCceEEEEeecccccceEEEEE
Q 015490 286 NTT--TW--KRIRTKQVVREPVSSFNVSADGKLLAVGTA-SGDISIIDS--SSLQVRTAVKKAHLGIVTALAF 351 (406)
Q Consensus 286 d~~--~~--~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~--~~~~~~~~~~~~~~~~v~~~~~ 351 (406)
++. ++ +.+..+.........+.++|+|++|+++.. ++.|.+|++ .++.....-....-....|+.|
T Consensus 273 ~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 273 DLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 983 23 344455544455799999999999998876 678998866 5666554432223344566665
No 230
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.61 E-value=9.3e-16 Score=141.74 Aligned_cols=205 Identities=15% Similarity=0.192 Sum_probs=158.5
Q ss_pred ccccc-CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCC
Q 015490 163 QLENV-GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASS 241 (406)
Q Consensus 163 ~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~ 241 (406)
.+.+| ..|.|+.|...|.++++|+.|..++||.++++.+.....+|.+.|++++.+.+..++++++.|..|++|-+..+
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~ 264 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG 264 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence 33344 78999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceE--------------EEEeee---------
Q 015490 242 AVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR--------------IRTKQV--------- 298 (406)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~--------------~~~~~~--------- 298 (406)
.++..+.+|. +.|++++|+|.. +.+.||++++||.+-.-. +..+..
T Consensus 265 ~pvsvLrght-gavtaiafsP~~----------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T 333 (1113)
T KOG0644|consen 265 APVSVLRGHT-GAVTAIAFSPRA----------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT 333 (1113)
T ss_pred chHHHHhccc-cceeeeccCccc----------cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccc
Confidence 9999888764 468999999954 447799999999881000 000000
Q ss_pred -------cCCCeEEEEEcCCCC-----------EEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCC-CeEE
Q 015490 299 -------VREPVSSFNVSADGK-----------LLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDS-RALV 359 (406)
Q Consensus 299 -------~~~~i~~~~~sp~~~-----------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~ 359 (406)
....+.+++|....- +.+++-.+..+.+|++.++...+.+. +|...+..+.++|-. +...
T Consensus 334 gs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~-ghsd~~yvLd~Hpfn~ri~m 412 (1113)
T KOG0644|consen 334 GSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM-GHSDEVYVLDVHPFNPRIAM 412 (1113)
T ss_pred ccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc-ccccceeeeeecCCCcHhhh
Confidence 001111222222222 22333345668889999998888875 899999999999954 5556
Q ss_pred EEECCCcEEEEEecCCcCCC
Q 015490 360 SASMDSSVRVTVIEDKKKSG 379 (406)
Q Consensus 360 s~s~dg~i~iw~~~~~~~~~ 379 (406)
+++.||...|||+-.+.++.
T Consensus 413 sag~dgst~iwdi~eg~pik 432 (1113)
T KOG0644|consen 413 SAGYDGSTIIWDIWEGIPIK 432 (1113)
T ss_pred hccCCCceEeeecccCCcce
Confidence 89999999999998776543
No 231
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.61 E-value=2e-12 Score=116.74 Aligned_cols=238 Identities=17% Similarity=0.193 Sum_probs=149.1
Q ss_pred eEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcE-EEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeee
Q 015490 127 GIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQ-LALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNE 205 (406)
Q Consensus 127 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~ 205 (406)
++++...+...+..+|..+.+.+ ..+.....+ ..+.|+|||+++++++.||.|.++|+.+++.+..+
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~------------~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i 74 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVV------------ARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATI 74 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEE------------EEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEE
T ss_pred EEEEEecCCCEEEEEECCCCeEE------------EEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEE
Confidence 44444433335666776644433 334333333 45789999999999999999999999999988887
Q ss_pred eccCCceeEEEEccCCCEEEEEe-CCCCEEEEEcCCCeeeeecccC------CcceEEEEEEEcCCCCceEEEEEEEcCC
Q 015490 206 SEAHASVKDLSFSPDGKFLVSLG-NRGPGRVWDLASSAVATPLAKE------NDELFASCRFSPLNNEDYVLYIAAITDR 278 (406)
Q Consensus 206 ~~~~~~i~~~~~s~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 278 (406)
.... ...++++|+||+++++++ ..+.+.++|.++.+.++.+... ....+..+..+|.... +++.-.+
T Consensus 75 ~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~-----fVv~lkd 148 (369)
T PF02239_consen 75 KVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE-----FVVNLKD 148 (369)
T ss_dssp E-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE-----EEEEETT
T ss_pred ecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCE-----EEEEEcc
Confidence 6544 468899999999998776 5889999999999988877542 2234667777887774 3344456
Q ss_pred CcEEEEEeCCCceEEE-EeeecCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCceEEEEeec---cc-----------
Q 015490 279 GASIVTWNTTTWKRIR-TKQVVREPVSSFNVSADGKLLAVGT-ASGDISIIDSSSLQVRTAVKK---AH----------- 342 (406)
Q Consensus 279 ~~~i~~~d~~~~~~~~-~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~---~~----------- 342 (406)
.+.|.+.|....+.+. .............|+|++++++++. .++.|-++|.++++....+.. .|
T Consensus 149 ~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~ 228 (369)
T PF02239_consen 149 TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPG 228 (369)
T ss_dssp TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETT
T ss_pred CCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCC
Confidence 7899999977654332 2222345678899999999887754 466788888887766554320 00
Q ss_pred ---------------------------------------ccceEEEEEcCCCCeEEEE----ECCCcEEEEEecCCcCCC
Q 015490 343 ---------------------------------------LGIVTALAFSYDSRALVSA----SMDSSVRVTVIEDKKKSG 379 (406)
Q Consensus 343 ---------------------------------------~~~v~~~~~sp~~~~l~s~----s~dg~i~iw~~~~~~~~~ 379 (406)
.+.-.-+..+|+++++.+. ...++|.++|.++.+.+.
T Consensus 229 ~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~ 308 (369)
T PF02239_consen 229 FGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVK 308 (369)
T ss_dssp TEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE
T ss_pred cceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeE
Confidence 0111345567888888877 345789999999887655
Q ss_pred Cch
Q 015490 380 GLN 382 (406)
Q Consensus 380 ~~~ 382 (406)
.+.
T Consensus 309 ~i~ 311 (369)
T PF02239_consen 309 TIT 311 (369)
T ss_dssp -HH
T ss_pred EEe
Confidence 554
No 232
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=8.8e-14 Score=118.39 Aligned_cols=227 Identities=11% Similarity=0.113 Sum_probs=165.4
Q ss_pred EEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCC-CEEEEee
Q 015490 108 ELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEG-TIFAAGS 186 (406)
Q Consensus 108 ~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~ 186 (406)
.....+.+|..+... |+..+.+.++|.+++|........ ...+..+.....+..+.-++.. ..+++|+
T Consensus 100 ~~~l~~~~I~gl~~~-dg~Litc~~sG~l~~~~~k~~d~h----------ss~l~~la~g~g~~~~r~~~~~p~Iva~GG 168 (412)
T KOG3881|consen 100 TVSLGTKSIKGLKLA-DGTLITCVSSGNLQVRHDKSGDLH----------SSKLIKLATGPGLYDVRQTDTDPYIVATGG 168 (412)
T ss_pred ccccccccccchhhc-CCEEEEEecCCcEEEEeccCCccc----------cccceeeecCCceeeeccCCCCCceEecCc
Confidence 344455666666654 455555556888888876543211 1222233344566667766644 4566698
Q ss_pred CC--CeEEEEeCCCcceEeeeeccCC---------ceeEEEEccC--CCEEEEEeCCCCEEEEEcCCCe-eeeecccCCc
Q 015490 187 EN--GNLRVFKWPSLEIILNESEAHA---------SVKDLSFSPD--GKFLVSLGNRGPGRVWDLASSA-VATPLAKEND 252 (406)
Q Consensus 187 ~d--g~i~vwd~~~~~~~~~~~~~~~---------~i~~~~~s~~--~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~~~~ 252 (406)
.. ..+.+||+++.+.+..-..... .++++.|-+. ...|++++.-+.+++||.+.++ ++..+... .
T Consensus 169 ke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~-E 247 (412)
T KOG3881|consen 169 KENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL-E 247 (412)
T ss_pred hhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc-c
Confidence 88 8899999988865544322211 4678888887 7899999999999999998754 45555443 5
Q ss_pred ceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEE-eeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 015490 253 ELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRT-KQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSS 331 (406)
Q Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~ 331 (406)
.+++++...|.++. +.++...+.+..+|+++++.... +.+..+.|+++..+|.++++++++-|..|||+|+++
T Consensus 248 ~~is~~~l~p~gn~------Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 248 NPISSTGLTPSGNF------IYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred CcceeeeecCCCcE------EEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 56889999999983 45667789999999999998777 777789999999999999999999999999999999
Q ss_pred ceEEEEeecccccceEEEEEcCC
Q 015490 332 LQVRTAVKKAHLGIVTALAFSYD 354 (406)
Q Consensus 332 ~~~~~~~~~~~~~~v~~~~~sp~ 354 (406)
.+++.... -...++++.+.++
T Consensus 322 rkll~kvY--vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 322 RKLLHKVY--VKSRLTFILLRDD 342 (412)
T ss_pred chhhhhhh--hhccccEEEecCC
Confidence 77776654 4556777777654
No 233
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=2.8e-12 Score=108.60 Aligned_cols=205 Identities=13% Similarity=0.145 Sum_probs=149.2
Q ss_pred eecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeecc---CCceeEEEEccCCCEEEEEe--CCCCEEE
Q 015490 161 LSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEA---HASVKDLSFSPDGKFLVSLG--NRGPGRV 235 (406)
Q Consensus 161 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~s~s--~d~~i~i 235 (406)
+..+.-...|.++.++.+ .|+++-.+ .|+|||+++.+.+.++... ...+.++.+++++.+++.=+ ..|.|.+
T Consensus 81 ICe~~fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l 157 (391)
T KOG2110|consen 81 ICEIFFPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL 157 (391)
T ss_pred EEEEecCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence 334445678889998764 45555554 4999999999988877554 22577777777777888743 4688999
Q ss_pred EEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCc-EEEEEeCCCceEEEEeeecC--CCeEEEEEcCCC
Q 015490 236 WDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGA-SIVTWNTTTWKRIRTKQVVR--EPVSSFNVSADG 312 (406)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~i~~~d~~~~~~~~~~~~~~--~~i~~~~~sp~~ 312 (406)
||..+-+.+..+..| ...+.+++|+++|.. +|++++.| .|+|+.+.+++.+.+|+... ..|.+++|+|++
T Consensus 158 ~d~~nl~~v~~I~aH-~~~lAalafs~~G~l------lATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds 230 (391)
T KOG2110|consen 158 FDTINLQPVNTINAH-KGPLAALAFSPDGTL------LATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDS 230 (391)
T ss_pred EEcccceeeeEEEec-CCceeEEEECCCCCE------EEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCC
Confidence 999999999888854 567889999999983 45555554 57999999999999887653 468899999999
Q ss_pred CEEEEEeCCCcEEEEECCCceEEE----------------------------------Eee--cccccce-EEEEEc--C
Q 015490 313 KLLAVGTASGDISIIDSSSLQVRT----------------------------------AVK--KAHLGIV-TALAFS--Y 353 (406)
Q Consensus 313 ~~l~~~~~dg~i~i~d~~~~~~~~----------------------------------~~~--~~~~~~v-~~~~~s--p 353 (406)
++|++.+..++|++|.+....... .+. ....... ..+.+. +
T Consensus 231 ~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~ 310 (391)
T KOG2110|consen 231 QFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQ 310 (391)
T ss_pred CeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccC
Confidence 999999999999999886321000 000 0001111 233344 3
Q ss_pred CCCeEEEEECCCcEEEEEecCC
Q 015490 354 DSRALVSASMDSSVRVTVIEDK 375 (406)
Q Consensus 354 ~~~~l~s~s~dg~i~iw~~~~~ 375 (406)
...++..++.||.++.|.+...
T Consensus 311 ~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 311 KIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred CCCEEEEEEcCCeEEEEEcCCC
Confidence 5678889999999999998654
No 234
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.4e-13 Score=117.15 Aligned_cols=248 Identities=12% Similarity=0.143 Sum_probs=169.7
Q ss_pred ccceeEEec-CCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc---CcEEEEEECC
Q 015490 103 DQPVAELRT-DSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV---GQQLALTFDS 177 (406)
Q Consensus 103 ~~~~~~~~~-h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~ 177 (406)
++|+..... |...|.|++|....+++++|. ++++.+.++... +.+..+.+. +.|..+..+|
T Consensus 94 ~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~--------------qsi~V~~~~~~~~~VY~m~~~P 159 (609)
T KOG4227|consen 94 PKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETK--------------QSIYVANENNNRGDVYHMDQHP 159 (609)
T ss_pred CCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccc--------------eeeeeecccCcccceeecccCC
Confidence 456655543 458999999999888888887 777766665532 222223333 5899999999
Q ss_pred CCCEEEEeeCCCeEEEEeCCCcc-eEe--eeeccCCceeEEEEccCC-CEEEEEeCCCCEEEEEcCCCeee-eeccc---
Q 015490 178 EGTIFAAGSENGNLRVFKWPSLE-IIL--NESEAHASVKDLSFSPDG-KFLVSLGNRGPGRVWDLASSAVA-TPLAK--- 249 (406)
Q Consensus 178 ~g~~l~~~~~dg~i~vwd~~~~~-~~~--~~~~~~~~i~~~~~s~~~-~~l~s~s~d~~i~iwd~~~~~~~-~~~~~--- 249 (406)
..+.|++.+.++.|.+||.+... ... ...........+.|+|.. .+|++.+..+.+-+||.+..... .....
T Consensus 160 ~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~ 239 (609)
T KOG4227|consen 160 TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKG 239 (609)
T ss_pred CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhcccc
Confidence 99999999999999999997654 221 222233477889999964 47788888889999999764321 11111
Q ss_pred -CC-cceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceE-EEEeeec------CCCeEEEEEcCCCCEEEEEeC
Q 015490 250 -EN-DELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR-IRTKQVV------REPVSSFNVSADGKLLAVGTA 320 (406)
Q Consensus 250 -~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~------~~~i~~~~~sp~~~~l~~~~~ 320 (406)
.. ........|+|.|.+ +++. .....-.+||+-+.++ +..+... ...+.+++|-.|- .+++|+.
T Consensus 240 L~~~~~~~M~~~~~~~G~Q-----~msi-RR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD 312 (609)
T KOG4227|consen 240 LPQENTEWMGSLWSPSGNQ-----FMSI-RRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSD 312 (609)
T ss_pred CcccchhhhheeeCCCCCe-----ehhh-hccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCc
Confidence 11 122357889999986 2222 3344455678766443 3333211 1346677887654 4899999
Q ss_pred CCcEEEEECCC-----c------------------eEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEe
Q 015490 321 SGDISIIDSSS-----L------------------QVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVI 372 (406)
Q Consensus 321 dg~i~i~d~~~-----~------------------~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~ 372 (406)
+-.|++|.+.. | +.+..+ ++|..-++.+.|+|...+|++.+-...+++|.-
T Consensus 313 ~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VL-rGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 313 HWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVL-RGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred ccceEEEecCCCccccCccccCcchhhCchhheecceeEEE-ecccccccceeecCCcceEeccchhhheecccc
Confidence 99999998752 1 112233 589999999999999999999999999999964
No 235
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1.3e-12 Score=121.03 Aligned_cols=202 Identities=15% Similarity=0.094 Sum_probs=127.3
Q ss_pred CcEEEEEECCCCCE--E-EEeeCC--CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeC-CC----CEEEEE
Q 015490 168 GQQLALTFDSEGTI--F-AAGSEN--GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGN-RG----PGRVWD 237 (406)
Q Consensus 168 ~~v~~~~~s~~g~~--l-~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~-d~----~i~iwd 237 (406)
.....-+|||||+. + ++...+ ..|.+.++.+++.. .+....+.....+|||||+.|+..+. +| .+.+|+
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~ 263 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFS 263 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEee
Confidence 44567799999975 2 233333 36888888877643 33333444567899999998887663 22 344467
Q ss_pred cCCC--eeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCc--EEEEEeCCC-ceEEEEeeecCCCeEEEEEcCCC
Q 015490 238 LASS--AVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGA--SIVTWNTTT-WKRIRTKQVVREPVSSFNVSADG 312 (406)
Q Consensus 238 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~i~~~d~~~-~~~~~~~~~~~~~i~~~~~sp~~ 312 (406)
+..+ .....+...........+|+|+++. ++.....++ .|+++++.. +.....+..+...+....|||||
T Consensus 264 ~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~-----Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG 338 (428)
T PRK01029 264 LETGAIGKPRRLLNEAFGTQGNPSFSPDGTR-----LVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG 338 (428)
T ss_pred cccCCCCcceEeecCCCCCcCCeEECCCCCE-----EEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC
Confidence 6653 1222222222223456799999996 233333344 566666642 23344444444567789999999
Q ss_pred CEEEEEeCC---CcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEEC---CCcEEEEEecCCcC
Q 015490 313 KLLAVGTAS---GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASM---DSSVRVTVIEDKKK 377 (406)
Q Consensus 313 ~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~---dg~i~iw~~~~~~~ 377 (406)
++|+..+.+ ..|.+||+.+++...... ....+....|+|||++|+..+. ...|++|++..++.
T Consensus 339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~--~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 339 KKIAFCSVIKGVRQICVYDLATGRDYQLTT--SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCeEEccC--CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 999877653 469999999887654432 3345678999999998875443 34688888876643
No 236
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.59 E-value=1.4e-13 Score=132.65 Aligned_cols=216 Identities=16% Similarity=0.214 Sum_probs=152.9
Q ss_pred ceeeeccc-ccCcEEEEEECCC-CCEEEEeeCCCeEEEEeCCCc-------ceEeeeeccCCceeEEEEccCCCEEEEEe
Q 015490 158 EKVLSQLE-NVGQQLALTFDSE-GTIFAAGSENGNLRVFKWPSL-------EIILNESEAHASVKDLSFSPDGKFLVSLG 228 (406)
Q Consensus 158 ~~~~~~~~-~~~~v~~~~~s~~-g~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~i~~~~~s~~~~~l~s~s 228 (406)
+..+..+. |...+..++.++. +.+|++|+.||+|++|+.+.. +...++......+.++...+.+..+|+++
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence 33444443 4466777777765 499999999999999998532 22233333455889999999999999999
Q ss_pred CCCCEEEEEcCCCe-------eeeecccCCcc-eEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEee--e
Q 015490 229 NRGPGRVWDLASSA-------VATPLAKENDE-LFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQ--V 298 (406)
Q Consensus 229 ~d~~i~iwd~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~--~ 298 (406)
.||.|++.++.... ..+....+..+ .+..-+|...... . .++.+...+.|..||+++.....+++ .
T Consensus 1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S--~--~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQS--H--VLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccc--e--eEEEEEeccceEEecchhhhhHHhhhcCc
Confidence 99999999987521 11222222223 3333344444332 1 23333467889999999866544443 2
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCC---CeEEEEE--CCCcEEEEEec
Q 015490 299 VREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDS---RALVSAS--MDSSVRVTVIE 373 (406)
Q Consensus 299 ~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~---~~l~s~s--~dg~i~iw~~~ 373 (406)
..+.|++++.+|.++++++|+..|.+.+||++-+.++..+..++..++..+..+|-. ...++++ ..+-|.+|++.
T Consensus 1194 ~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecc
Confidence 347899999999999999999999999999999999988876777888888877742 4555444 46789999999
Q ss_pred CCcC
Q 015490 374 DKKK 377 (406)
Q Consensus 374 ~~~~ 377 (406)
+|..
T Consensus 1274 ~g~~ 1277 (1431)
T KOG1240|consen 1274 TGLR 1277 (1431)
T ss_pred cCcc
Confidence 9843
No 237
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.58 E-value=2.4e-12 Score=107.41 Aligned_cols=248 Identities=15% Similarity=0.113 Sum_probs=158.9
Q ss_pred ceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCEEE
Q 015490 105 PVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFA 183 (406)
Q Consensus 105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~ 183 (406)
--..+......+.+++|||||+.++..+.-..+|-.|...+... ..+.+. ..+..++|+|||++.+
T Consensus 83 w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~-------------~~~~~pK~~~kg~~f~~dg~f~a 149 (447)
T KOG4497|consen 83 WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG-------------YLLPHPKTNVKGYAFHPDGQFCA 149 (447)
T ss_pred eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee-------------EEecccccCceeEEECCCCceee
Confidence 44567777889999999999998888774444444444432211 111122 4456778888887766
Q ss_pred EeeC------------------------------------CCeEEEEeCCCcceEeeeeccC-CceeEEEEccCCCEEEE
Q 015490 184 AGSE------------------------------------NGNLRVFKWPSLEIILNESEAH-ASVKDLSFSPDGKFLVS 226 (406)
Q Consensus 184 ~~~~------------------------------------dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~s 226 (406)
..++ +..+.|||---.-.+. .-+. -.+..++|+|.+++|++
T Consensus 150 i~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~--aYe~~lG~k~v~wsP~~qflav 227 (447)
T KOG4497|consen 150 ILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY--AYERGLGLKFVEWSPCNQFLAV 227 (447)
T ss_pred eeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee--eeeeccceeEEEeccccceEEe
Confidence 6543 1234455522111111 1222 26889999999999999
Q ss_pred EeCCCCEEEEEcCCCe------------------------------------------------------------eeee
Q 015490 227 LGNRGPGRVWDLASSA------------------------------------------------------------VATP 246 (406)
Q Consensus 227 ~s~d~~i~iwd~~~~~------------------------------------------------------------~~~~ 246 (406)
|+.|+.+|+.+--+-+ .+..
T Consensus 228 GsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~ 307 (447)
T KOG4497|consen 228 GSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHK 307 (447)
T ss_pred eccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeec
Confidence 9999988875431100 0011
Q ss_pred ccc-----CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCC
Q 015490 247 LAK-----ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAS 321 (406)
Q Consensus 247 ~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d 321 (406)
++. .....+..++|++|..+ ..+-....-..+.+||++..+....+ ....+|....|+|....|+.+...
T Consensus 308 lkp~tD~pnPk~g~g~lafs~Ds~y----~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~piraf~WdP~~prL~vctg~ 382 (447)
T KOG4497|consen 308 LKPPTDFPNPKCGAGKLAFSCDSTY----AATRNDKYPNALWLWDLQNLKLHAVL-IQKHPIRAFEWDPGRPRLVVCTGK 382 (447)
T ss_pred ccCCCCCCCcccccceeeecCCceE----EeeecCCCCceEEEEechhhhhhhhh-hhccceeEEEeCCCCceEEEEcCC
Confidence 110 01223567899999874 22222233468999999986654333 345789999999998888888878
Q ss_pred CcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCC
Q 015490 322 GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDK 375 (406)
Q Consensus 322 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~ 375 (406)
..+++|.......+.... ..-.|..++|.-+|..++-++.|.-. +--+++.
T Consensus 383 srLY~W~psg~~~V~vP~--~GF~i~~l~W~~~g~~i~l~~kDafc-~a~ve~e 433 (447)
T KOG4497|consen 383 SRLYFWAPSGPRVVGVPK--KGFNIQKLQWLQPGEFIVLCGKDAFC-VAIVEDE 433 (447)
T ss_pred ceEEEEcCCCceEEecCC--CCceeeeEEecCCCcEEEEEcCCceE-EEEecCC
Confidence 889999987666555543 44679999999999999999988632 3244443
No 238
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=7.7e-11 Score=100.26 Aligned_cols=271 Identities=13% Similarity=0.186 Sum_probs=180.6
Q ss_pred ccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe----cCCeEEEEEecccccceeecceeccceeee
Q 015490 87 NAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL----QNSCRLFEWDEVENTEIRRLGVKISEKVLS 162 (406)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 162 (406)
..+..+.++.....+. ...+-.+.+.++-|+|+|++++|.++. .+.+.-|.||..++.....- ..
T Consensus 16 ~gI~v~~ld~~~g~l~---~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln--------~~ 84 (346)
T COG2706 16 QGIYVFNLDTKTGELS---LLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLN--------RQ 84 (346)
T ss_pred CceEEEEEeCcccccc---hhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEee--------cc
Confidence 4567788886655442 223445678889999999999998875 46677788886544322110 00
Q ss_pred cccccCcEEEEEECCCCCEEEEeeC-CCeEEEEeCCC-cceE--eeeeccCC----------ceeEEEEccCCCEEEEEe
Q 015490 163 QLENVGQQLALTFDSEGTIFAAGSE-NGNLRVFKWPS-LEII--LNESEAHA----------SVKDLSFSPDGKFLVSLG 228 (406)
Q Consensus 163 ~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~vwd~~~-~~~~--~~~~~~~~----------~i~~~~~s~~~~~l~s~s 228 (406)
...+ .+-+.++++++|++++++.. .|.|.++-++. |... .....|.+ .+....+.|++++|++..
T Consensus 85 ~~~g-~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D 163 (346)
T COG2706 85 TLPG-SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPD 163 (346)
T ss_pred ccCC-CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEee
Confidence 1112 23378999999999998866 57899999865 3221 11222222 278899999999998875
Q ss_pred C-CCCEEEEEcCCCeeeeec--ccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc-eEEEEeeec-----
Q 015490 229 N-RGPGRVWDLASSAVATPL--AKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW-KRIRTKQVV----- 299 (406)
Q Consensus 229 ~-d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~----- 299 (406)
- -..|.+|++..|+....- ....+...+.+.|+|+++. ..+...-+++|.+|..+.. ..+..++.+
T Consensus 164 LG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~-----aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~ 238 (346)
T COG2706 164 LGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKY-----AYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE 238 (346)
T ss_pred cCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcE-----EEEEeccCCEEEEEEEcCCCceEEEeeeeccCcc
Confidence 3 237999999977654321 1234445678999999994 4455577899999988763 222332221
Q ss_pred ----CCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCc-eEEEEe--ecccccceEEEEEcCCCCeEEEEECC-CcEEEE
Q 015490 300 ----REPVSSFNVSADGKLLAVGTA-SGDISIIDSSSL-QVRTAV--KKAHLGIVTALAFSYDSRALVSASMD-SSVRVT 370 (406)
Q Consensus 300 ----~~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~~-~~~~~~--~~~~~~~v~~~~~sp~~~~l~s~s~d-g~i~iw 370 (406)
......+..+|||++|.++.. ...|.+|.+... ..+... ...+....+...++++|++|+++..+ ..|.+|
T Consensus 239 dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 239 DFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred ccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 245778999999999998766 346888877532 222222 12344557899999999999988865 468888
Q ss_pred EecC
Q 015490 371 VIED 374 (406)
Q Consensus 371 ~~~~ 374 (406)
.++.
T Consensus 319 ~~d~ 322 (346)
T COG2706 319 ERDK 322 (346)
T ss_pred EEcC
Confidence 8754
No 239
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.56 E-value=1.1e-13 Score=111.90 Aligned_cols=156 Identities=17% Similarity=0.191 Sum_probs=120.0
Q ss_pred CcEEEEEECC-CC--CEEEEeeCCCeEEEEeCCCcce----------EeeeeccCCceeEEEEccCCCEEEEEeCCCCEE
Q 015490 168 GQQLALTFDS-EG--TIFAAGSENGNLRVFKWPSLEI----------ILNESEAHASVKDLSFSPDGKFLVSLGNRGPGR 234 (406)
Q Consensus 168 ~~v~~~~~s~-~g--~~l~~~~~dg~i~vwd~~~~~~----------~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~ 234 (406)
+.+.|..+.. ++ -++++|-++|.+.+||+.++.. ......|..+|.++.+.+.-..=++++.+..+.
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~ 230 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV 230 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence 3455555433 23 2566788899999999988733 333455667899999987655666777788899
Q ss_pred EEEcCCC--eeee-ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCC
Q 015490 235 VWDLASS--AVAT-PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSAD 311 (406)
Q Consensus 235 iwd~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~ 311 (406)
.|.+... .... ....-....+..+...||++ ++++++.|+.|++|..++..++..++.|...|.+++|+|+
T Consensus 231 ~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K------IlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd 304 (323)
T KOG0322|consen 231 MYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK------ILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPD 304 (323)
T ss_pred eeeeccccCcccccceEEecCCCccceEEccCCc------EEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCC
Confidence 9988643 2211 11111233467889999998 6889999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEEC
Q 015490 312 GKLLAVGTASGDISIIDS 329 (406)
Q Consensus 312 ~~~l~~~~~dg~i~i~d~ 329 (406)
...+|.++.|++|.+|++
T Consensus 305 ~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 305 CELMAAASKDARISLWKL 322 (323)
T ss_pred CchhhhccCCceEEeeec
Confidence 999999999999999986
No 240
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=5.3e-11 Score=101.20 Aligned_cols=273 Identities=12% Similarity=0.149 Sum_probs=165.8
Q ss_pred CCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecc
Q 015490 67 RRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEV 144 (406)
Q Consensus 67 ~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~ 144 (406)
++.+.++++... |....+..+.+|.+.+.+..-....+ ...+.+.++++++|++++++. .+.+.++-+...
T Consensus 49 ~~~~~LY~v~~~-----~~~ggvaay~iD~~~G~Lt~ln~~~~--~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~d 121 (346)
T COG2706 49 PDQRHLYVVNEP-----GEEGGVAAYRIDPDDGRLTFLNRQTL--PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQAD 121 (346)
T ss_pred CCCCEEEEEEec-----CCcCcEEEEEEcCCCCeEEEeecccc--CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccC
Confidence 355566665332 23557788999987655433222222 233448999999999999987 566666655433
Q ss_pred cccceeeccee-ccceeeecccccCcEEEEEECCCCCEEEEeeC-CCeEEEEeCCCcceEeee---eccCCceeEEEEcc
Q 015490 145 ENTEIRRLGVK-ISEKVLSQLENVGQQLALTFDSEGTIFAAGSE-NGNLRVFKWPSLEIILNE---SEAHASVKDLSFSP 219 (406)
Q Consensus 145 ~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~vwd~~~~~~~~~~---~~~~~~i~~~~~s~ 219 (406)
+........- ....-...-+....+.+..+.|++++|++..- -..|.+|++..++..... ......-+.|.|+|
T Consensus 122 -G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp 200 (346)
T COG2706 122 -GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP 200 (346)
T ss_pred -CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcC
Confidence 2221111110 00000001111233888999999999988743 237999999877643221 12233679999999
Q ss_pred CCCEEEEEeC-CCCEEEEEcCCC-eeeee------ccc--CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC-
Q 015490 220 DGKFLVSLGN-RGPGRVWDLASS-AVATP------LAK--ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT- 288 (406)
Q Consensus 220 ~~~~l~s~s~-d~~i~iwd~~~~-~~~~~------~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~- 288 (406)
++++....++ +++|.+|..... ..... ++. ........+..+++|+. +.++......|.++.+.
T Consensus 201 n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrF-----LYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 201 NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRF-----LYASNRGHDSIAVFSVDP 275 (346)
T ss_pred CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCE-----EEEecCCCCeEEEEEEcC
Confidence 9998777765 889999998763 22221 211 12334667899999994 66666667788888664
Q ss_pred -CceE--EEEeeecCCCeEEEEEcCCCCEEEEEeCC-CcEEEEECC--CceEEEEeecccccceEEEEEc
Q 015490 289 -TWKR--IRTKQVVREPVSSFNVSADGKLLAVGTAS-GDISIIDSS--SLQVRTAVKKAHLGIVTALAFS 352 (406)
Q Consensus 289 -~~~~--~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-g~i~i~d~~--~~~~~~~~~~~~~~~v~~~~~s 352 (406)
+++. +.....+....+.+.|++.|++|+++..+ ..|.+|..+ +|+..............|+.|.
T Consensus 276 ~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 276 DGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 3332 22222233346889999999999998874 458888664 4554443332344445566664
No 241
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.56 E-value=2.5e-12 Score=120.14 Aligned_cols=190 Identities=17% Similarity=0.155 Sum_probs=129.5
Q ss_pred ccCcEEEEEECCCCCEEEEeeCC---CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEE-eCCC--CEEEEEcC
Q 015490 166 NVGQQLALTFDSEGTIFAAGSEN---GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSL-GNRG--PGRVWDLA 239 (406)
Q Consensus 166 ~~~~v~~~~~s~~g~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-s~d~--~i~iwd~~ 239 (406)
+...+...+|+|||++|+.+..+ ..|++||+.+++... +......+.+++|+|||+.|+.. +.++ .|++||+.
T Consensus 188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~ 266 (417)
T TIGR02800 188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD 266 (417)
T ss_pred CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECC
Confidence 34467888999999999887654 479999998876543 33344456779999999977654 4343 58889998
Q ss_pred CCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEe
Q 015490 240 SSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGT 319 (406)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 319 (406)
++...... .+ ........|+|+++. +++.........|+++|+.+++. ..+..+......+.|+|+|++|+.++
T Consensus 267 ~~~~~~l~-~~-~~~~~~~~~s~dg~~---l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~ 340 (417)
T TIGR02800 267 GKQLTRLT-NG-PGIDTEPSWSPDGKS---IAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVH 340 (417)
T ss_pred CCCEEECC-CC-CCCCCCEEECCCCCE---EEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEE
Confidence 77544332 22 223346789999985 22222122334788999887664 33444445677889999999999988
Q ss_pred CCC---cEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCC
Q 015490 320 ASG---DISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDS 365 (406)
Q Consensus 320 ~dg---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg 365 (406)
.++ .|.+||+.++.... +. .........|+|||++|+..+.++
T Consensus 341 ~~~~~~~i~~~d~~~~~~~~-l~--~~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 341 REGGGFNIAVMDLDGGGERV-LT--DTGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred ccCCceEEEEEeCCCCCeEE-cc--CCCCCCCceECCCCCEEEEEEeCC
Confidence 765 78999998755432 22 122345678999999988777654
No 242
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=3.6e-12 Score=119.33 Aligned_cols=199 Identities=18% Similarity=0.142 Sum_probs=130.7
Q ss_pred ccCcEEEEEECCCCCEEEEeeCC---CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEE-eCCC--CEEEEEcC
Q 015490 166 NVGQQLALTFDSEGTIFAAGSEN---GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSL-GNRG--PGRVWDLA 239 (406)
Q Consensus 166 ~~~~v~~~~~s~~g~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-s~d~--~i~iwd~~ 239 (406)
+...+....|||||+.|+..+.+ ..|.+||+.+++... +......+....|+|||+.|+.. +.++ .|++||+.
T Consensus 197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~ 275 (430)
T PRK00178 197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA 275 (430)
T ss_pred CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECC
Confidence 44678899999999998876543 369999998876543 33333345679999999988754 4444 58888998
Q ss_pred CCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEe
Q 015490 240 SSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGT 319 (406)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 319 (406)
+++... +..+ ........|+|+++. +++.........|+++|+.+++... +...........|+|||++|+..+
T Consensus 276 ~~~~~~-lt~~-~~~~~~~~~spDg~~---i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~ 349 (430)
T PRK00178 276 SRQLSR-VTNH-PAIDTEPFWGKDGRT---LYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVH 349 (430)
T ss_pred CCCeEE-cccC-CCCcCCeEECCCCCE---EEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEE
Confidence 876543 3322 223456789999985 2222222234578888988776433 222223345678999999998876
Q ss_pred CC-C--cEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECC-C--cEEEEEecC
Q 015490 320 AS-G--DISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMD-S--SVRVTVIED 374 (406)
Q Consensus 320 ~d-g--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d-g--~i~iw~~~~ 374 (406)
.+ + .|.++|+.+++... +. +........|+|||++++..+.+ + .|.++++..
T Consensus 350 ~~~~~~~l~~~dl~tg~~~~-lt--~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 350 RQDGNFHVAAQDLQRGSVRI-LT--DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred ccCCceEEEEEECCCCCEEE-cc--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 53 3 58889998876533 32 22223356899999998876644 3 466666643
No 243
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=4.6e-14 Score=123.30 Aligned_cols=265 Identities=12% Similarity=0.126 Sum_probs=187.4
Q ss_pred ceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEeccccccee-------ec------------------------
Q 015490 105 PVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIR-------RL------------------------ 152 (406)
Q Consensus 105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~-------~~------------------------ 152 (406)
....|..|.+.|..+.|+..|..|++++ +..+.+|+|......... .+
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 4457889999999999999999999998 778888888764321110 00
Q ss_pred -ceecc---ceeeecccccCcEEEEEECCCC-CEEEEeeCCCeEEEEeCCCcceEeeee---ccCC---ceeEEEEccCC
Q 015490 153 -GVKIS---EKVLSQLENVGQQLALTFDSEG-TIFAAGSENGNLRVFKWPSLEIILNES---EAHA---SVKDLSFSPDG 221 (406)
Q Consensus 153 -~~~~~---~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~---~i~~~~~s~~~ 221 (406)
.+... ........|+++|..++.-|+. .-|.+++.|+.+.-+|++.+.....+. .... ..+.++..|..
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 00000 1122233466888899998865 678899999999999997765433222 1222 56788888865
Q ss_pred C-EEEEEeCCCCEEEEEcCCCee------eeeccc-----CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC
Q 015490 222 K-FLVSLGNRGPGRVWDLASSAV------ATPLAK-----ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT 289 (406)
Q Consensus 222 ~-~l~s~s~d~~i~iwd~~~~~~------~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~ 289 (406)
. .+++++.|..+++||.+.-.. +..+.. .....|++++|+.++.. +++ ...|-.|+++.-..
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE-----lLa-SYnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE-----LLA-SYNDEDIYLFNKSM 367 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc-----eee-eecccceEEecccc
Confidence 5 899999999999999875322 122221 23345899999988876 222 24466788884332
Q ss_pred --c----------eEEEE-eeecCC--CeEEEE-EcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcC
Q 015490 290 --W----------KRIRT-KQVVRE--PVSSFN-VSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSY 353 (406)
Q Consensus 290 --~----------~~~~~-~~~~~~--~i~~~~-~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp 353 (406)
+ ..+.. +++|.. .|..+- |-|...|+++|+.-|.|.||+-.+++.+..+. +...-|+|+.-+|
T Consensus 368 ~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me-gDr~VVNCLEpHP 446 (559)
T KOG1334|consen 368 GDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME-GDRHVVNCLEPHP 446 (559)
T ss_pred ccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhh-cccceEeccCCCC
Confidence 2 12222 566653 355554 56788999999999999999999999988886 5555899999999
Q ss_pred CCCeEEEEECCCcEEEEEecCCc
Q 015490 354 DSRALVSASMDSSVRVTVIEDKK 376 (406)
Q Consensus 354 ~~~~l~s~s~dg~i~iw~~~~~~ 376 (406)
--..||+++-|..|+||.-.+.+
T Consensus 447 ~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 447 HLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred CCchhhccCCccceeeecCCccc
Confidence 99999999999999999885443
No 244
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.55 E-value=1.7e-11 Score=102.03 Aligned_cols=196 Identities=15% Similarity=0.244 Sum_probs=134.0
Q ss_pred CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEeccccc
Q 015490 68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENT 147 (406)
Q Consensus 68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~ 147 (406)
..+++++.|||+..++ .+|++.+|. ... ..++.++. -..+|.++.+.+ ..+++.-.+.+.||.+..+ .+
T Consensus 57 R~N~laLVGGg~~pky-~pNkviIWD--D~k----~~~i~el~-f~~~I~~V~l~r--~riVvvl~~~I~VytF~~n-~k 125 (346)
T KOG2111|consen 57 RSNYLALVGGGSRPKY-PPNKVIIWD--DLK----ERCIIELS-FNSEIKAVKLRR--DRIVVVLENKIYVYTFPDN-PK 125 (346)
T ss_pred hhceEEEecCCCCCCC-CCceEEEEe--ccc----CcEEEEEE-eccceeeEEEcC--CeEEEEecCeEEEEEcCCC-hh
Confidence 3466666666554433 355655555 222 34555553 467899999976 4677777888888776532 22
Q ss_pred ceeecceeccceeeecccccCcEEEEEECCCCCEEEE-eeCCCeEEEEeCCCcce--EeeeeccCCceeEEEEccCCCEE
Q 015490 148 EIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAA-GSENGNLRVFKWPSLEI--ILNESEAHASVKDLSFSPDGKFL 224 (406)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l 224 (406)
.++.+.. ...+....+++-+.+..+||. |-.-|.|+|-|+...+. ...+..|...|.|++.+.+|..+
T Consensus 126 ~l~~~et---------~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~v 196 (346)
T KOG2111|consen 126 LLHVIET---------RSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLV 196 (346)
T ss_pred heeeeec---------ccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEE
Confidence 2222221 122223333333334445554 34568999999976554 45677888899999999999999
Q ss_pred EEEeCCCC-EEEEEcCCCeeeeecccC-CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC
Q 015490 225 VSLGNRGP-GRVWDLASSAVATPLAKE-NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT 289 (406)
Q Consensus 225 ~s~s~d~~-i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~ 289 (406)
|++|..|+ |||||..+|+.+..+..+ ....+.+++|+|+.. +++..++.|+|+++.++.
T Consensus 197 ATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s------~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 197 ATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS------WLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc------EEEEEcCCCeEEEEEeec
Confidence 99999987 799999999999988653 345699999999998 456668899999998764
No 245
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=7.6e-12 Score=116.81 Aligned_cols=198 Identities=15% Similarity=0.142 Sum_probs=127.1
Q ss_pred ccCcEEEEEECCCCCEEEEeeCC---CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEE-eCCCC--EEEEEcC
Q 015490 166 NVGQQLALTFDSEGTIFAAGSEN---GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSL-GNRGP--GRVWDLA 239 (406)
Q Consensus 166 ~~~~v~~~~~s~~g~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-s~d~~--i~iwd~~ 239 (406)
....+.+..|||||+.|+..+.+ ..|++||+.+++... +..........+|+|||+.|+.. +.++. |+++|+.
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~ 294 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA 294 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence 44577889999999988876543 368899998876532 22223334578999999988764 55664 7778888
Q ss_pred CCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEe
Q 015490 240 SSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGT 319 (406)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 319 (406)
+++... +..+ ........|+|+++. +++.........|+++|+.+++... +..........+|+|||++|+..+
T Consensus 295 tg~~~~-lt~~-~~~~~~p~wSpDG~~---I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 295 TKALTR-ITRH-RAIDTEPSWHPDGKS---LIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred CCCeEE-CccC-CCCccceEECCCCCE---EEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEE
Confidence 776543 3322 234557899999985 2222222334578888888776433 322223345679999999998876
Q ss_pred C-CC--cEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECC-Cc--EEEEEec
Q 015490 320 A-SG--DISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMD-SS--VRVTVIE 373 (406)
Q Consensus 320 ~-dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d-g~--i~iw~~~ 373 (406)
. ++ .|.++|+.+++... +... .......|+|||++|+..+.+ +. +++++..
T Consensus 369 ~~~g~~~I~~~dl~~g~~~~-lt~~--~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 369 RTNGKFNIARQDLETGAMQV-LTST--RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred ecCCceEEEEEECCCCCeEE-ccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 5 33 46667888776533 2212 122355899999988765543 33 6666663
No 246
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.53 E-value=8.2e-12 Score=116.69 Aligned_cols=236 Identities=17% Similarity=0.195 Sum_probs=145.6
Q ss_pred EEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeecccc
Q 015490 89 VLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN 166 (406)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (406)
..++.++... .....+..+...+.+.+|+|||++|+.+. ++...||.++..++.... + ...
T Consensus 170 ~~l~~~d~~g-----~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----------~--~~~ 232 (417)
T TIGR02800 170 YELQVADYDG-----ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----------V--ASF 232 (417)
T ss_pred ceEEEEcCCC-----CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----------e--ecC
Confidence 3555555543 23455666777899999999999999875 344577777765442211 1 112
Q ss_pred cCcEEEEEECCCCCEEEE-eeCCC--eEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCC-C--CEEEEEcCC
Q 015490 167 VGQQLALTFDSEGTIFAA-GSENG--NLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNR-G--PGRVWDLAS 240 (406)
Q Consensus 167 ~~~v~~~~~s~~g~~l~~-~~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d-~--~i~iwd~~~ 240 (406)
...+.+++|+|||+.|+. .+.++ .|++||+.++... .+..+........|+|||+.|+..+.. + .|+++|+.+
T Consensus 233 ~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~ 311 (417)
T TIGR02800 233 PGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG 311 (417)
T ss_pred CCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 344567899999987764 34443 5888998877543 333344445678999999988876643 3 578888877
Q ss_pred CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC
Q 015490 241 SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA 320 (406)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~ 320 (406)
++... +... ........|+|+++. +++.........|.+||+.++.. ..+... .......|+|||++|+..+.
T Consensus 312 ~~~~~-l~~~-~~~~~~~~~spdg~~---i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~ 384 (417)
T TIGR02800 312 GEVRR-LTFR-GGYNASPSWSPDGDL---IAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATT 384 (417)
T ss_pred CCEEE-eecC-CCCccCeEECCCCCE---EEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEe
Confidence 65433 2222 233557889999984 22222222234899999987543 223222 23456789999999988777
Q ss_pred CC---cEEEEECCCceEEEEeecccccceEEEEE
Q 015490 321 SG---DISIIDSSSLQVRTAVKKAHLGIVTALAF 351 (406)
Q Consensus 321 dg---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 351 (406)
++ .+.+.+.. +.....+. .+.+.+..+.|
T Consensus 385 ~~~~~~l~~~~~~-g~~~~~~~-~~~g~~~~~~w 416 (417)
T TIGR02800 385 RGGRGVLGLVSTD-GRFRARLP-LGNGDVREPAW 416 (417)
T ss_pred CCCcEEEEEEECC-CceeeECC-CCCCCcCCCCC
Confidence 54 35565644 44444443 23445555554
No 247
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.53 E-value=6.3e-13 Score=111.46 Aligned_cols=258 Identities=12% Similarity=0.144 Sum_probs=167.5
Q ss_pred CCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecce----eccceeeecccccCcEEEEEECCCC--CEEEE
Q 015490 112 DSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGV----KISEKVLSQLENVGQQLALTFDSEG--TIFAA 184 (406)
Q Consensus 112 h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~ 184 (406)
..+.+.++.|...|.+|++|. +|.+.++.-+.....+..-... .+...-+..+.-...|..+.|.+++ ..++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 346789999999999999996 5555554332221111111100 1122233334445678899999876 45667
Q ss_pred eeCCCeEEEEeCCCcce-----------------------------------Eeeee-ccCCceeEEEEccCCCEEEEEe
Q 015490 185 GSENGNLRVFKWPSLEI-----------------------------------ILNES-EAHASVKDLSFSPDGKFLVSLG 228 (406)
Q Consensus 185 ~~~dg~i~vwd~~~~~~-----------------------------------~~~~~-~~~~~i~~~~~s~~~~~l~s~s 228 (406)
.+.|.+|++|.+..... .+.+. .|.-.|+++.++.|+..++++.
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD 183 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD 183 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence 78899999998742110 01111 1233688999999998888665
Q ss_pred CCCCEEEEEcCCCeee---eecccC----CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEE----EEee
Q 015490 229 NRGPGRVWDLASSAVA---TPLAKE----NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRI----RTKQ 297 (406)
Q Consensus 229 ~d~~i~iwd~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~----~~~~ 297 (406)
|-.|.+|+++-.... .-++.+ -...|++..|+|.... +.+..+..|.|++-|++....- +.+.
T Consensus 184 -dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn-----~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE 257 (433)
T KOG1354|consen 184 -DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCN-----VFVYSSSKGTIRLCDMRQSALCDAHSKLFE 257 (433)
T ss_pred -ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHcc-----EEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence 668999998643221 122221 1235788899998875 4556677999999999843211 1111
Q ss_pred e------------cCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC-CCceEEEEeecccc------------cce---EEE
Q 015490 298 V------------VREPVSSFNVSADGKLLAVGTASGDISIIDS-SSLQVRTAVKKAHL------------GIV---TAL 349 (406)
Q Consensus 298 ~------------~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~------------~~v---~~~ 349 (406)
. --..|..+.|+++|+|+++-. --+|++||+ ...+++.++. .|. ..| ..+
T Consensus 258 epedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~-vh~~lr~kLc~lYEnD~IfdKFec 335 (433)
T KOG1354|consen 258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYP-VHEYLRSKLCSLYENDAIFDKFEC 335 (433)
T ss_pred cccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEe-ehHhHHHHHHHHhhccchhheeEE
Confidence 1 114688999999999998754 367999999 4556665554 342 223 478
Q ss_pred EEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490 350 AFSYDSRALVSASMDSSVRVTVIEDKKK 377 (406)
Q Consensus 350 ~~sp~~~~l~s~s~dg~i~iw~~~~~~~ 377 (406)
+|+.++.+++||+....++++++..|..
T Consensus 336 ~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 336 SWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred EEcCCcceEecccccceEEEecCCCCcc
Confidence 9999999999999999999999766543
No 248
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=5.6e-13 Score=118.87 Aligned_cols=216 Identities=13% Similarity=0.185 Sum_probs=158.4
Q ss_pred ceeeecccccCcEEEEEECCCCCEE-EEeeCCCeEEEEeCCCcceEeeeeccCC--------------------------
Q 015490 158 EKVLSQLENVGQQLALTFDSEGTIF-AAGSENGNLRVFKWPSLEIILNESEAHA-------------------------- 210 (406)
Q Consensus 158 ~~~~~~~~~~~~v~~~~~s~~g~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~-------------------------- 210 (406)
.+.++.+.+....+.+..+|||+|+ |+|...-.|++||+.+.... +..|..
T Consensus 42 ieLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~Ie 119 (703)
T KOG2321|consen 42 IELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTIE 119 (703)
T ss_pred HHHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCceee
Confidence 3456677788888999999999875 56777889999998643211 100100
Q ss_pred ---------------ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEE
Q 015490 211 ---------------SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAI 275 (406)
Q Consensus 211 ---------------~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (406)
.-.+++++.-..-|+.++....|+-++++.|+.+..+.... ..+.++..++... +++.
T Consensus 120 fHak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~-~~lN~v~in~~hg------Lla~ 192 (703)
T KOG2321|consen 120 FHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDS-GELNVVSINEEHG------LLAC 192 (703)
T ss_pred ehhhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEcccccccccccccc-ccceeeeecCccc------eEEe
Confidence 11233333222234555556678889999999888877543 4578898988876 6788
Q ss_pred cCCCcEEEEEeCCCceEEEEeeecC-----------CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeeccccc
Q 015490 276 TDRGASIVTWNTTTWKRIRTKQVVR-----------EPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLG 344 (406)
Q Consensus 276 ~~~~~~i~~~d~~~~~~~~~~~~~~-----------~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 344 (406)
|+.+|.|-.||.++...+..+.... ..|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-..+...
T Consensus 193 Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~ 272 (703)
T KOG2321|consen 193 GTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYEL 272 (703)
T ss_pred cccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCcc
Confidence 8899999999999877766654332 24899999999999999999999999999999988876655567
Q ss_pred ceEEEEEcCC--CCeEEEEECCCcEEEEEecCCcCCCCchH
Q 015490 345 IVTALAFSYD--SRALVSASMDSSVRVTVIEDKKKSGGLNL 383 (406)
Q Consensus 345 ~v~~~~~sp~--~~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 383 (406)
+|..+.|.+. +..|+|. ....++|||-.+|+....+..
T Consensus 273 pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp 312 (703)
T KOG2321|consen 273 PIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP 312 (703)
T ss_pred ceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc
Confidence 8999999775 3445543 456799999999988665543
No 249
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=7.6e-12 Score=111.59 Aligned_cols=117 Identities=15% Similarity=0.229 Sum_probs=92.8
Q ss_pred CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC---CCcEEEE
Q 015490 251 NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA---SGDISII 327 (406)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~---dg~i~i~ 327 (406)
..++|.++.|+|+++. |.++.|-.-..+.++|++. +++..+ ..++=.++-|+|.|++|+.++- .|.|-||
T Consensus 269 k~GPVhdv~W~~s~~E----F~VvyGfMPAkvtifnlr~-~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvw 341 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGRE----FAVVYGFMPAKVTIFNLRG-KPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVW 341 (566)
T ss_pred CCCCceEEEECCCCCE----EEEEEecccceEEEEcCCC-CEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEE
Confidence 4567899999999987 7777788888999999986 444444 4566688999999999998776 5889999
Q ss_pred ECCCceEEEEeecccccceEEEEEcCCCCeEEEEE------CCCcEEEEEecCCcCC
Q 015490 328 DSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSAS------MDSSVRVTVIEDKKKS 378 (406)
Q Consensus 328 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s------~dg~i~iw~~~~~~~~ 378 (406)
|..+.+.+..+. . ..-+-+.|+|||++++|++ -|+.++||++. |..+
T Consensus 342 Dv~n~K~i~~~~-a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l 394 (566)
T KOG2315|consen 342 DVPNRKLIAKFK-A--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLL 394 (566)
T ss_pred eccchhhccccc-c--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Ccee
Confidence 999988887774 2 2345689999999999886 46889999984 4443
No 250
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.50 E-value=6.4e-12 Score=112.78 Aligned_cols=189 Identities=18% Similarity=0.193 Sum_probs=152.7
Q ss_pred CCCCEEEEeeCCCeEEEEeCCCcceEeeeeccC---CceeEEEEc--------------------cCCCEEEEEeCCCCE
Q 015490 177 SEGTIFAAGSENGNLRVFKWPSLEIILNESEAH---ASVKDLSFS--------------------PDGKFLVSLGNRGPG 233 (406)
Q Consensus 177 ~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~i~~~~~s--------------------~~~~~l~s~s~d~~i 233 (406)
|...++|....||.+++|+..+++....+.... +...+..|. .|-..++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 455789999999999999998887766554322 234445551 133467778889999
Q ss_pred EEEEcCCCeeeeecc-cCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCC
Q 015490 234 RVWDLASSAVATPLA-KENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADG 312 (406)
Q Consensus 234 ~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~ 312 (406)
.+|++..++....+. ..+...+.++.++.+-. ++.+++.|..+..|+....+..+........+.+++.+|||
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~------ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~ 156 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG------CIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDG 156 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccC------ceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCC
Confidence 999999999988887 56677788887777655 56777889999999999999999998888889999999999
Q ss_pred CEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCC-----CCeEEE-EECCCcEEEEEecC
Q 015490 313 KLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYD-----SRALVS-ASMDSSVRVTVIED 374 (406)
Q Consensus 313 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~-----~~~l~s-~s~dg~i~iw~~~~ 374 (406)
+.+++++ +.|.+||+.+.+.+..+. +|.++|++++|.-+ |.++++ ...+..+.+|-++.
T Consensus 157 ~~l~~as--~~ik~~~~~~kevv~~ft-gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 157 KILLTAS--RQIKVLDIETKEVVITFT-GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CEEEecc--ceEEEEEccCceEEEEec-CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9999876 679999999999999996 99999999999876 666654 44566788998865
No 251
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.46 E-value=2.8e-09 Score=94.36 Aligned_cols=270 Identities=9% Similarity=0.010 Sum_probs=161.8
Q ss_pred EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEec---------CCeEEEEEecccccceeecceecccee
Q 015490 90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQ---------NSCRLFEWDEVENTEIRRLGVKISEKV 160 (406)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~---------~~~~i~~~~~~~~~~~~~~~~~~~~~~ 160 (406)
.++.+|.... +.+.++.....+ ..+ ++||++.++++.. ++-.|-.+|..+.+....+.+++..+.
T Consensus 28 ~v~ViD~~~~----~v~g~i~~G~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 28 QVYTIDGEAG----RVLGMTDGGFLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF 101 (352)
T ss_pred eEEEEECCCC----EEEEEEEccCCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence 4556666552 344555544333 335 9999999888765 444566677777777666655311110
Q ss_pred eecccccCcEEEEEECCCCCEEEEee-C-CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEc
Q 015490 161 LSQLENVGQQLALTFDSEGTIFAAGS-E-NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDL 238 (406)
Q Consensus 161 ~~~~~~~~~v~~~~~s~~g~~l~~~~-~-dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~ 238 (406)
. .......++++|||+++++.. . +..|.+.|+.+++.+..+.-.. ...-...+++..+ +-+.||......+
T Consensus 102 ~----~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~--~~~~Dg~~~~v~~ 174 (352)
T TIGR02658 102 L----VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFF--MHCRDGSLAKVGY 174 (352)
T ss_pred h----ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccE--EEeecCceEEEEe
Confidence 0 112234689999999998765 3 6899999999999887775432 2222223222221 1223443333222
Q ss_pred CC-Ceee-eecc---cCCcceEEEEEEEc-CCCCceEEEEEEEcCCCcEEEEEeCCCc-----eEEEEeee-------cC
Q 015490 239 AS-SAVA-TPLA---KENDELFASCRFSP-LNNEDYVLYIAAITDRGASIVTWNTTTW-----KRIRTKQV-------VR 300 (406)
Q Consensus 239 ~~-~~~~-~~~~---~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~i~~~d~~~~-----~~~~~~~~-------~~ 300 (406)
.+ ++.. .... .........-.|.+ +++. +| .+ . .|.|.+.|+... +....+.. ..
T Consensus 175 d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~---~~--vs-~-eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP 247 (352)
T TIGR02658 175 GTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRL---VW--PT-Y-TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRP 247 (352)
T ss_pred cCCCceEEeeeeeecCCccccccCCceEcCCCcE---EE--Ee-c-CCeEEEEecCCCcceecceeeeccccccccccCC
Confidence 21 1111 1111 10000011114556 5553 22 22 2 399999996432 22222211 12
Q ss_pred CCeEEEEEcCCCCEEEEEeC----------CCcEEEEECCCceEEEEeecccccceEEEEEcCCCC-eEEEEE-CCCcEE
Q 015490 301 EPVSSFNVSADGKLLAVGTA----------SGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSR-ALVSAS-MDSSVR 368 (406)
Q Consensus 301 ~~i~~~~~sp~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~s-~dg~i~ 368 (406)
+.+.-++++|+++.+++... .+.|.++|..+++.+..+.. ...+..++++||++ +|++.. .++.|.
T Consensus 248 ~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v--G~~~~~iavS~Dgkp~lyvtn~~s~~Vs 325 (352)
T TIGR02658 248 GGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL--GHEIDSINVSQDAKPLLYALSTGDKTLY 325 (352)
T ss_pred CcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC--CCceeeEEECCCCCeEEEEeCCCCCcEE
Confidence 33445999999998888532 25799999999999999863 45789999999999 777665 578899
Q ss_pred EEEecCCcCCCCc
Q 015490 369 VTVIEDKKKSGGL 381 (406)
Q Consensus 369 iw~~~~~~~~~~~ 381 (406)
+.|+.+++.++.+
T Consensus 326 ViD~~t~k~i~~i 338 (352)
T TIGR02658 326 IFDAETGKELSSV 338 (352)
T ss_pred EEECcCCeEEeee
Confidence 9999999887766
No 252
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.43 E-value=2.9e-11 Score=101.63 Aligned_cols=212 Identities=12% Similarity=0.189 Sum_probs=141.1
Q ss_pred CCCceEEEEccCCC---eEEEEecCCeEEEEEecccccc-------------eeeccee--------ccceeeec--ccc
Q 015490 113 SDLPYRMAIHPHGD---GIICALQNSCRLFEWDEVENTE-------------IRRLGVK--------ISEKVLSQ--LEN 166 (406)
Q Consensus 113 ~~~v~~~~~sp~~~---~l~~~~~~~~~i~~~~~~~~~~-------------~~~~~~~--------~~~~~~~~--~~~ 166 (406)
...|..+.|.+++. +|+++.+.++++|.+.....+. +..+.++ ....+.+. ..|
T Consensus 84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH 163 (433)
T KOG1354|consen 84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH 163 (433)
T ss_pred hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence 35688999998875 5666669999999887554332 0111110 01112222 234
Q ss_pred cCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcce---EeeeeccCC-----ceeEEEEccC-CCEEEEEeCCCCEEEEE
Q 015490 167 VGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEI---ILNESEAHA-----SVKDLSFSPD-GKFLVSLGNRGPGRVWD 237 (406)
Q Consensus 167 ~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~-----~i~~~~~s~~-~~~l~s~s~d~~i~iwd 237 (406)
...|+++.++.|+..++++ .|=.|.+|+++--.. +..+..+.- -|++..|+|. .+.++..+..|+|++.|
T Consensus 164 tyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD 242 (433)
T KOG1354|consen 164 TYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD 242 (433)
T ss_pred eeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence 4678999999999988886 467899999863322 222333322 5888999995 45788888999999999
Q ss_pred cCCCeee----eecccCC-----------cceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeC-CCceEEEEeeecCC
Q 015490 238 LASSAVA----TPLAKEN-----------DELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNT-TTWKRIRTKQVVRE 301 (406)
Q Consensus 238 ~~~~~~~----~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~-~~~~~~~~~~~~~~ 301 (406)
++..... ..+.... -..|..+.|+++|++ +++ .+--+|++||+ ...+++.+.+.|..
T Consensus 243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGry-----ils--RDyltvk~wD~nme~~pv~t~~vh~~ 315 (433)
T KOG1354|consen 243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRY-----ILS--RDYLTVKLWDLNMEAKPVETYPVHEY 315 (433)
T ss_pred chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcE-----EEE--eccceeEEEeccccCCcceEEeehHh
Confidence 9853221 1111111 123677899999995 332 33478999999 45567777776631
Q ss_pred ---------------CeEEEEEcCCCCEEEEEeCCCcEEEEECCCc
Q 015490 302 ---------------PVSSFNVSADGKLLAVGTASGDISIIDSSSL 332 (406)
Q Consensus 302 ---------------~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~ 332 (406)
.-..++|+-++.++++|+....+++|++..+
T Consensus 316 lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 316 LRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred HHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 2246789999999999999999999996543
No 253
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.43 E-value=2.3e-11 Score=102.26 Aligned_cols=253 Identities=16% Similarity=0.163 Sum_probs=181.8
Q ss_pred ccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCE
Q 015490 103 DQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTI 181 (406)
Q Consensus 103 ~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 181 (406)
+..+..++||.+.|+....-|...-+++.+ |.+++||.-. +.++-...+ ......+++++.+.++...
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkr-ds~q~wpsI----------~~~mP~~~~~~~y~~e~~~ 82 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKR-DSGQYWPSI----------YHYMPSPCSAMEYVSESRR 82 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEec-cccccCchh----------hhhCCCCceEeeeeccceE
Confidence 456778999999999999999888888887 8999998533 222211111 1123477899999999999
Q ss_pred EEEeeCCCeEEEEeC----CCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEE
Q 015490 182 FAAGSENGNLRVFKW----PSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFAS 257 (406)
Q Consensus 182 l~~~~~dg~i~vwd~----~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 257 (406)
|++|-.+|++.-+.+ +.....+....|...+..+-|+....++++.+.|..+.---.+.+..+..+... +
T Consensus 83 L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~------~ 156 (404)
T KOG1409|consen 83 LYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE------T 156 (404)
T ss_pred EEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee------c
Confidence 999999999998866 344455666778889999999988889999999976644334444332211100 0
Q ss_pred EEEEcCCCCceEEEEEEEcCCCcEEEEE--eCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEE
Q 015490 258 CRFSPLNNEDYVLYIAAITDRGASIVTW--NTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVR 335 (406)
Q Consensus 258 ~~~~~~~~~~~~l~~~~~~~~~~~i~~~--d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~ 335 (406)
. ..... ..+.....+...+.|... +...-..+.++.+|.+.+.+++|.|..+.|++|..|..+.+||+...+-+
T Consensus 157 ~--~t~~~--~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~ 232 (404)
T KOG1409|consen 157 P--ASALQ--FDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT 232 (404)
T ss_pred c--CCCCc--eeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce
Confidence 0 00000 011123334444544443 33445678889999999999999999999999999999999999766555
Q ss_pred EEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490 336 TAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKK 376 (406)
Q Consensus 336 ~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~ 376 (406)
.....+|...|..+...+--+.|++++.||.|-+|+++...
T Consensus 233 ~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 233 AYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred eeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 44445899999999888888899999999999999997643
No 254
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.38 E-value=1.6e-09 Score=110.56 Aligned_cols=255 Identities=15% Similarity=0.153 Sum_probs=158.0
Q ss_pred ceEEEEccCCCeEEEEecCCeEEEEEecccccceeeccee-ccceeeecc--cccCcEEEEEECCCCCEEEEee-CCCeE
Q 015490 116 PYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVK-ISEKVLSQL--ENVGQQLALTFDSEGTIFAAGS-ENGNL 191 (406)
Q Consensus 116 v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~v~~~~~s~~g~~l~~~~-~dg~i 191 (406)
...+++++++..++++..+.-+|+.++.. +.....+... .....-..+ ..-.....++++++++.|+++. .++.|
T Consensus 570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 570 PGKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred CceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 45788888766566655333366666653 2222221110 000000000 0112357889999887666554 45789
Q ss_pred EEEeCCCcceEeeeecc-----------------CCceeEEEEcc-CCCEEEEEeCCCCEEEEEcCCCeeeeecc-----
Q 015490 192 RVFKWPSLEIILNESEA-----------------HASVKDLSFSP-DGKFLVSLGNRGPGRVWDLASSAVATPLA----- 248 (406)
Q Consensus 192 ~vwd~~~~~~~~~~~~~-----------------~~~i~~~~~s~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~----- 248 (406)
+++|+.++... .+.+. -....+++++| ++..+++.+.++.|++||..++.......
T Consensus 649 r~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 99998765432 22110 01246799999 55566666778899999997765432100
Q ss_pred ---c-----CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeee-------------c--------
Q 015490 249 ---K-----ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV-------------V-------- 299 (406)
Q Consensus 249 ---~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~-------------~-------- 299 (406)
. ..-.....++++|++.. +.++...++.|++||+.++.......+ .
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~-----LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~ 802 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKE-----LYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVL 802 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCE-----EEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhh
Confidence 0 00112456899999885 334556788999999987653211100 0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecc------------cccceEEEEEcCCCCeEEEEECCCcE
Q 015490 300 REPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKA------------HLGIVTALAFSYDSRALVSASMDSSV 367 (406)
Q Consensus 300 ~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------~~~~v~~~~~sp~~~~l~s~s~dg~i 367 (406)
-.....++++++|+.+++-..++.|++||..++........+ .-.....++++++|+.+++-+.+++|
T Consensus 803 l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I 882 (1057)
T PLN02919 803 LQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI 882 (1057)
T ss_pred ccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence 012368899999998888888999999999877655333111 11246789999999998988899999
Q ss_pred EEEEecCCcC
Q 015490 368 RVTVIEDKKK 377 (406)
Q Consensus 368 ~iw~~~~~~~ 377 (406)
++||+.+++.
T Consensus 883 rvid~~~~~~ 892 (1057)
T PLN02919 883 RYLDLNKGEA 892 (1057)
T ss_pred EEEECCCCcc
Confidence 9999988764
No 255
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=8.9e-10 Score=101.54 Aligned_cols=196 Identities=10% Similarity=0.056 Sum_probs=125.6
Q ss_pred CcEEEEEECCCCCE-EEEeeC---CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEe-C--CCCEEEEEcCC
Q 015490 168 GQQLALTFDSEGTI-FAAGSE---NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLG-N--RGPGRVWDLAS 240 (406)
Q Consensus 168 ~~v~~~~~s~~g~~-l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s-~--d~~i~iwd~~~ 240 (406)
+......|||||+. ++..+. +..|+++|+.+++.... ....+......|+|||+.++... . +..|.++|+.+
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l-t~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI-ASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE-ecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 36678999999984 665433 35799999988865543 33444566788999998776543 2 34688888877
Q ss_pred CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC
Q 015490 241 SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA 320 (406)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~ 320 (406)
++... +..... ......|+|+++. ++++........|+++|+.+++..+.... .. ....|||||++|+....
T Consensus 267 g~~~~-LT~~~~-~d~~p~~SPDG~~---I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~~Ia~~~~ 338 (419)
T PRK04043 267 KTLTQ-ITNYPG-IDVNGNFVEDDKR---IVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKNYIVYSSR 338 (419)
T ss_pred CcEEE-cccCCC-ccCccEECCCCCE---EEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCCCCEEEEEEc
Confidence 76433 332222 2335689999986 33333233344899999988765333221 11 23589999999987765
Q ss_pred C---------CcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECC-C--cEEEEEecCC
Q 015490 321 S---------GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMD-S--SVRVTVIEDK 375 (406)
Q Consensus 321 d---------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d-g--~i~iw~~~~~ 375 (406)
. ..|.+.|+.++.... +... .......|+|||+.++..+.+ + .+.+.++...
T Consensus 339 ~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~--~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 339 ETNNEFGKNTFNLYLISTNSDYIRR-LTAN--GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CCCcccCCCCcEEEEEECCCCCeEE-CCCC--CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 3 368888998876543 3212 233468999999988766543 2 3556666443
No 256
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=1.2e-09 Score=100.67 Aligned_cols=196 Identities=12% Similarity=0.084 Sum_probs=124.2
Q ss_pred CceEEEEccCCCe-EEEEe-c-CCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEe-eC--C
Q 015490 115 LPYRMAIHPHGDG-IICAL-Q-NSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAG-SE--N 188 (406)
Q Consensus 115 ~v~~~~~sp~~~~-l~~~~-~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~--d 188 (406)
......|+|||+. ++..+ . +.-.||.++..+++... +. ...+......|||||+.++.. +. +
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~----------lt--~~~g~~~~~~~SPDG~~la~~~~~~g~ 256 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK----------IA--SSQGMLVVSDVSKDGSKLLLTMAPKGQ 256 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE----------Ee--cCCCcEEeeEECCCCCEEEEEEccCCC
Confidence 7788999999985 55444 3 45689998876543221 11 133445567899999877654 32 3
Q ss_pred CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCC-C--CEEEEEcCCCeeeeecccCCcceEEEEEEEcCCC
Q 015490 189 GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNR-G--PGRVWDLASSAVATPLAKENDELFASCRFSPLNN 265 (406)
Q Consensus 189 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (406)
..|.++|+.+++.. .+..+........|+|||+.|+..+.. + .|.+.|+.+++..+...... . ...|+|+++
T Consensus 257 ~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--~--~~~~SPDG~ 331 (419)
T PRK04043 257 PDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--N--NSSVSTYKN 331 (419)
T ss_pred cEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC--c--CceECCCCC
Confidence 57888898777643 344333333456899999988877642 2 58888888777644332211 1 248999999
Q ss_pred CceEEEEEEEcC------CCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCc
Q 015490 266 EDYVLYIAAITD------RGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAS---GDISIIDSSSL 332 (406)
Q Consensus 266 ~~~~l~~~~~~~------~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---g~i~i~d~~~~ 332 (406)
. +++ +.... ....|.+.|+.++.. ..+... .......|+|||+.|+....+ ..+.++++...
T Consensus 332 ~--Ia~-~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 332 Y--IVY-SSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred E--EEE-EEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 6 222 22111 114789999988764 334333 233468999999988877653 23667777643
No 257
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.35 E-value=3.7e-10 Score=93.21 Aligned_cols=268 Identities=19% Similarity=0.175 Sum_probs=167.4
Q ss_pred EEEEecCCCCccccceeEEecCCCCceEEEEcc---CCCeEEE-E-ecCCeEEEEEecccccceeecceeccceeeeccc
Q 015490 91 LSHFDFASNSLSDQPVAELRTDSDLPYRMAIHP---HGDGIIC-A-LQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE 165 (406)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp---~~~~l~~-~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (406)
++.++.+.....+ ........+..+..|.|.. +|.+... + ..+.+.++..+..... . .++.+.
T Consensus 48 l~Lys~~d~~~~~-l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss--~---------~L~~ls 115 (339)
T KOG0280|consen 48 LHLYSLEDMKLSP-LDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS--V---------HLRGLS 115 (339)
T ss_pred eEEEeecccccCc-cceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceee--e---------eecccc
Confidence 3444444444433 2222233455667777763 4442222 2 3677777766543211 0 111111
Q ss_pred cc----CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcce--EeeeeccCCceeEEEEcc-CCCEEEEEeCCCCEEEEEc
Q 015490 166 NV----GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEI--ILNESEAHASVKDLSFSP-DGKFLVSLGNRGPGRVWDL 238 (406)
Q Consensus 166 ~~----~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~iwd~ 238 (406)
.. ....++.|++.+..++++..+|.+.+-+...... ++....|.-+++-..|+. +.+.+.+|++|+.+..||+
T Consensus 116 ~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~ 195 (339)
T KOG0280|consen 116 SKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDI 195 (339)
T ss_pred hhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEe
Confidence 11 1356789999999999999999998666544433 336677777888888875 3458899999999999999
Q ss_pred CC-CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC-ceEEEEeeecCCCeEEEEEcCC--CCE
Q 015490 239 AS-SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT-WKRIRTKQVVREPVSSFNVSAD--GKL 314 (406)
Q Consensus 239 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~i~~~~~sp~--~~~ 314 (406)
+. ++.+..-...|...|.++.-+|.... .+++|+.|-.|++||.++ ++++..-.. .+.|..+.++|. ++.
T Consensus 196 R~p~~~i~~n~kvH~~GV~SI~ss~~~~~-----~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~GGVWRi~~~p~~~~~l 269 (339)
T KOG0280|consen 196 RIPKTFIWHNSKVHTSGVVSIYSSPPKPT-----YIATGSYDECIRVLDTRNMGKPLFKAKV-GGGVWRIKHHPEIFHRL 269 (339)
T ss_pred cCCcceeeecceeeecceEEEecCCCCCc-----eEEEeccccceeeeehhcccCccccCcc-ccceEEEEecchhhhHH
Confidence 93 33333322334556778888887665 678899999999999984 555555443 377999999994 334
Q ss_pred EEEEeCCCcEEEEECCCceE----EEEeecccccceEEEEEcCCCCeEEEEE-CCCcEE-EEEecCCcC
Q 015490 315 LAVGTASGDISIIDSSSLQV----RTAVKKAHLGIVTALAFSYDSRALVSAS-MDSSVR-VTVIEDKKK 377 (406)
Q Consensus 315 l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~v~~~~~sp~~~~l~s~s-~dg~i~-iw~~~~~~~ 377 (406)
|+++-.+| .+|.+...... .......|.+-+..-.|.....+|+||+ .|+.++ +|-.-++..
T Consensus 270 L~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~~ 337 (339)
T KOG0280|consen 270 LAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGEP 337 (339)
T ss_pred HHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCCc
Confidence 44444444 67777654332 2223346777677777755456788876 677755 887666543
No 258
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.34 E-value=6.8e-12 Score=125.33 Aligned_cols=226 Identities=15% Similarity=0.246 Sum_probs=164.2
Q ss_pred EecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC
Q 015490 109 LRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE 187 (406)
Q Consensus 109 ~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 187 (406)
++.+-..|.++.=+|...+.++|+ |+.+++|.|..... ..+.++. +...|+.+.|+.+|+.+..+..
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~-----------v~~~rt~-g~s~vtr~~f~~qGnk~~i~d~ 2271 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ-----------VVCFRTA-GNSRVTRSRFNHQGNKFGIVDG 2271 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCe-----------EEEeecc-CcchhhhhhhcccCCceeeecc
Confidence 445567889999999999888887 99999999975321 1122222 3478899999999999999999
Q ss_pred CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEe---CCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCC
Q 015490 188 NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLG---NRGPGRVWDLASSAVATPLAKENDELFASCRFSPLN 264 (406)
Q Consensus 188 dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (406)
||.+.+|.+. .+.......|.....++.|-. ..+++++ .++.+.+||.--.....-+...|....+++++.|..
T Consensus 2272 dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~ 2348 (2439)
T KOG1064|consen 2272 DGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKH 2348 (2439)
T ss_pred CCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcc
Confidence 9999999986 555666777777888888865 5677664 578899999643222222223456678899999998
Q ss_pred CCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeeccccc
Q 015490 265 NEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLG 344 (406)
Q Consensus 265 ~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 344 (406)
+ ++.+|+.+|.|++||++..+..++++. ++ ...++++|+..|.++||++.....+..+...|..
T Consensus 2349 q------llisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak 2412 (2439)
T KOG1064|consen 2349 Q------LLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAK 2412 (2439)
T ss_pred e------EEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchhhcc
Confidence 7 577889999999999998776665543 44 5678999999999999999988887777643421
Q ss_pred c----e--EEEEEcCCCCeEEEEECCCc
Q 015490 345 I----V--TALAFSYDSRALVSASMDSS 366 (406)
Q Consensus 345 ~----v--~~~~~sp~~~~l~s~s~dg~ 366 (406)
. . ..+-.. .+..|.+|+.||+
T Consensus 2413 ~gfFr~~g~Q~~v~-~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2413 QGFFRNIGMQINVG-QCNRIFSCGADGT 2439 (2439)
T ss_pred cchhhhcCceeeec-cCceEEEecCCCC
Confidence 1 1 112222 2345667777763
No 259
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.33 E-value=3.2e-11 Score=103.51 Aligned_cols=173 Identities=13% Similarity=0.085 Sum_probs=128.0
Q ss_pred ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCee----eeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEe
Q 015490 211 SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAV----ATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWN 286 (406)
Q Consensus 211 ~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d 286 (406)
....+..+++++++|++..+....++++..... ...... ......+.|..+... ..++-..++...+.+|.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v--~~~~~ai~~~~~~~s---v~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV--PKRPTAISFIREDTS---VLVADKAGDVYSFDILS 138 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec--ccCcceeeeeeccce---EEEEeecCCceeeeeec
Confidence 345566788888999988888877887765433 111111 112345556555553 23444455566677777
Q ss_pred CCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCc
Q 015490 287 TTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSS 366 (406)
Q Consensus 287 ~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~ 366 (406)
...+.+ ...-+|-.-++.++|+||+++|+++..|..|++-.......+..+-.||..-|..++.-++ ..|+++|.|++
T Consensus 139 ~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~t 216 (390)
T KOG3914|consen 139 ADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKT 216 (390)
T ss_pred ccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCc
Confidence 665443 3445777889999999999999999999999999988877777776789999999999865 56899999999
Q ss_pred EEEEEecCCcCCCCchHHHHHHHH
Q 015490 367 VRVTVIEDKKKSGGLNLWIIIFIL 390 (406)
Q Consensus 367 i~iw~~~~~~~~~~~~~~~~~~~~ 390 (406)
|++||+.+++.+..+++-.+...+
T Consensus 217 lr~Wd~~sgk~L~t~dl~s~~~~i 240 (390)
T KOG3914|consen 217 LRLWDITSGKLLDTCDLSSLVIPI 240 (390)
T ss_pred EEEEecccCCcccccchhHhhhhc
Confidence 999999999999999886644433
No 260
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=4.9e-10 Score=100.09 Aligned_cols=236 Identities=11% Similarity=0.152 Sum_probs=143.5
Q ss_pred eEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC---------
Q 015490 117 YRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE--------- 187 (406)
Q Consensus 117 ~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--------- 187 (406)
+-+.|||.|.+|++---..+.+|- .... ..++.+. |..|.-+.|||..+||++=+.
T Consensus 214 tyv~wSP~GTYL~t~Hk~GI~lWG--G~~f------------~r~~RF~-Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d 278 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQGIALWG--GESF------------DRIQRFY-HPGVQFIDFSPNEKYLVTYSPEPIIVEEDD 278 (698)
T ss_pred eeEEecCCceEEEEEeccceeeec--CccH------------HHHHhcc-CCCceeeecCCccceEEEecCCccccCccc
Confidence 578999999999988777778863 2211 1222232 456888999999999998543
Q ss_pred --CCeEEEEeCCCcceEeeeeccCC--c-eeEEEEccCCCEEEEEeCCCCEEEEEcCCC---------------------
Q 015490 188 --NGNLRVFKWPSLEIILNESEAHA--S-VKDLSFSPDGKFLVSLGNRGPGRVWDLASS--------------------- 241 (406)
Q Consensus 188 --dg~i~vwd~~~~~~~~~~~~~~~--~-i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~--------------------- 241 (406)
...++|||+.+|.....+..... . -.-+.||.|++++|....+ +|.||+..+-
T Consensus 279 ~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~ 357 (698)
T KOG2314|consen 279 NEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPT 357 (698)
T ss_pred CCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCC
Confidence 25799999999987766654222 2 2235677777777765543 4555543211
Q ss_pred --------------------------eeeeeccc----------------------------------------------
Q 015490 242 --------------------------AVATPLAK---------------------------------------------- 249 (406)
Q Consensus 242 --------------------------~~~~~~~~---------------------------------------------- 249 (406)
+.++.-..
T Consensus 358 ~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI 437 (698)
T KOG2314|consen 358 SNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI 437 (698)
T ss_pred cceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC
Confidence 00000000
Q ss_pred -----CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC----ceEEEEeeecCCCeEEEEEcCCCCEEEEEe-
Q 015490 250 -----ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT----WKRIRTKQVVREPVSSFNVSADGKLLAVGT- 319 (406)
Q Consensus 250 -----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~----~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~- 319 (406)
.-...+-..+|-|.|.+ ..++.......++.+|...+ .+.+..+. ....+.+.|+|.|++++++.
T Consensus 438 pve~velke~vi~FaWEP~gdk---F~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l 512 (698)
T KOG2314|consen 438 PVEVVELKESVIAFAWEPHGDK---FAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAAL 512 (698)
T ss_pred CceeeecchheeeeeeccCCCe---EEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEe
Confidence 01122334566677765 22222223345666666552 12233332 24567899999999998764
Q ss_pred --CCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEEC------CCcEEEEEecC
Q 015490 320 --ASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASM------DSSVRVTVIED 374 (406)
Q Consensus 320 --~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~------dg~i~iw~~~~ 374 (406)
..|.+.++|+........-...| ...+.+.|.|.|+|++|++. |..-++|++..
T Consensus 513 ~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 513 VSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred cccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 47889999998433322221124 34678999999999999874 44567777653
No 261
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.33 E-value=9.1e-11 Score=111.97 Aligned_cols=195 Identities=15% Similarity=0.206 Sum_probs=145.0
Q ss_pred CCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccC-----cEEEEEECCCCCEEEEeeC
Q 015490 114 DLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVG-----QQLALTFDSEGTIFAAGSE 187 (406)
Q Consensus 114 ~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~s~~g~~l~~~~~ 187 (406)
+.+....+.-+...++.+. ++.+.+|++.. ... +....+.. ...-+.++++.-++++|+.
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~--~~~------------~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv 153 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKN--SSV------------LSKIQSDERCTLYSSLIIGDSAEELYIASGSV 153 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEeccc--Cce------------ehhcCCCceEEEEeEEEEeccCcEEEEEeccc
Confidence 3344444444555666654 66655555442 222 22222221 2233456778889999999
Q ss_pred CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCc
Q 015490 188 NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNED 267 (406)
Q Consensus 188 dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (406)
-+.|.+|+....+....+.+|.+.|.++.|+.||+++++.|+|.++++|++.+.+........|...+..+.|.|+ .
T Consensus 154 ~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~-- 230 (967)
T KOG0974|consen 154 FGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-R-- 230 (967)
T ss_pred cccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-e--
Confidence 9999999987444444688999999999999999999999999999999999988877555567778889999997 2
Q ss_pred eEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC-CCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 015490 268 YVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR-EPVSSFNVSADGKLLAVGTASGDISIIDSSS 331 (406)
Q Consensus 268 ~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~ 331 (406)
+.+.+.|.+.++|+.+. +.+..+..|. ..+..++.+++...+++++.|+.+++||+..
T Consensus 231 -----i~t~gedctcrvW~~~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 231 -----IITVGEDCTCRVWGVNG-TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred -----eEEeccceEEEEEeccc-ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 45668999999997654 4444666664 6789999999999999999999999999853
No 262
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.33 E-value=6.8e-09 Score=86.01 Aligned_cols=238 Identities=13% Similarity=0.111 Sum_probs=137.5
Q ss_pred EEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC
Q 015490 119 MAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPS 198 (406)
Q Consensus 119 ~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~ 198 (406)
++.+.+|+.||+.-|..+.|..-..+-...+.+..+ .-.....-+.++||||+.+||.+...|+|++||+..
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqV--------pkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g 74 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQV--------PKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG 74 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEec--------CCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc
Confidence 567889999998888888876544322222122111 111223356899999999999999999999999864
Q ss_pred cceEeeeeccC-------CceeEEEEccC------CCEEEEEeCCCCEEEEEcCCC-----eeee--ecccCCcceEEEE
Q 015490 199 LEIILNESEAH-------ASVKDLSFSPD------GKFLVSLGNRGPGRVWDLASS-----AVAT--PLAKENDELFASC 258 (406)
Q Consensus 199 ~~~~~~~~~~~-------~~i~~~~~s~~------~~~l~s~s~d~~i~iwd~~~~-----~~~~--~~~~~~~~~~~~~ 258 (406)
.. +..+.... ..|..+.|.+. ...|++...+|.++-|-+..+ +... .+..+....+.++
T Consensus 75 ~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~ 153 (282)
T PF15492_consen 75 SE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSA 153 (282)
T ss_pred ce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEE
Confidence 33 33333222 26777777542 125777888888887775322 2222 2333445568899
Q ss_pred EEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEE---cCCCCEEEEEeCCC------cEEEEEC
Q 015490 259 RFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNV---SADGKLLAVGTASG------DISIIDS 329 (406)
Q Consensus 259 ~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~---sp~~~~l~~~~~dg------~i~i~d~ 329 (406)
.|+|..+ |+ ++.|.....-... ......+++-.. +|..+. ++...|+ +..+|.+
T Consensus 154 vy~p~h~----LL-lVgG~~~~~~~~s-----------~a~~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~ 216 (282)
T PF15492_consen 154 VYHPKHR----LL-LVGGCEQNQDGMS-----------KASSCGLTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRI 216 (282)
T ss_pred EEcCCCC----EE-EEeccCCCCCccc-----------cccccCceEEEEcCCCCcEEE-ccccCccccccccccceeec
Confidence 9999886 22 2333333210000 001111111111 111111 1111111 1123333
Q ss_pred CCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCchH
Q 015490 330 SSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLNL 383 (406)
Q Consensus 330 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 383 (406)
-+.+..... ......|..|..||||..||+...+|.|.+|++.+-+..+++.+
T Consensus 217 ~~~~~fs~~-~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 217 PSFKFFSRQ-GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred cceeeeecc-ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 333222221 13456799999999999999999999999999998777666543
No 263
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.31 E-value=8.2e-09 Score=90.83 Aligned_cols=174 Identities=17% Similarity=0.138 Sum_probs=122.0
Q ss_pred CCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCC-eEEEEeCCCcceE
Q 015490 124 HGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENG-NLRVFKWPSLEII 202 (406)
Q Consensus 124 ~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg-~i~vwd~~~~~~~ 202 (406)
+|.+++..+.+..-| .+...+ ..-.+.+.+.|.-..+..+++-++.|..|| .+-|+|.++++..
T Consensus 331 ~Gd~ia~VSRGkaFi--~~~~~~-------------~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k 395 (668)
T COG4946 331 NGDYIALVSRGKAFI--MRPWDG-------------YSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK 395 (668)
T ss_pred CCcEEEEEecCcEEE--ECCCCC-------------eeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE
Confidence 577777777665444 333211 122234556788888888888999999999 8999999887654
Q ss_pred eeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEE
Q 015490 203 LNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASI 282 (406)
Q Consensus 203 ~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i 282 (406)
.+...-+.|.++..+++|++++++.....+.+.|+.++..... .......++...|+|+++. +.|..-.+--...|
T Consensus 396 -r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~i-dkS~~~lItdf~~~~nsr~--iAYafP~gy~tq~I 471 (668)
T COG4946 396 -RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLI-DKSEYGLITDFDWHPNSRW--IAYAFPEGYYTQSI 471 (668)
T ss_pred -EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEe-cccccceeEEEEEcCCcee--EEEecCcceeeeeE
Confidence 4555666899999999999999999999999999999876443 3344567889999999984 22222223334679
Q ss_pred EEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEE
Q 015490 283 VTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAV 317 (406)
Q Consensus 283 ~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~ 317 (406)
+++|+.+++....... .+.-.+.+|.||+++|..
T Consensus 472 klydm~~~Kiy~vTT~-ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 472 KLYDMDGGKIYDVTTP-TAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred EEEecCCCeEEEecCC-cccccCcccCCCCcEEEE
Confidence 9999998876554332 233355666777766544
No 264
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.30 E-value=2.1e-11 Score=121.92 Aligned_cols=198 Identities=15% Similarity=0.247 Sum_probs=152.8
Q ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeecc-CCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeee
Q 015490 168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEA-HASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATP 246 (406)
Q Consensus 168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 246 (406)
..|.++.=+|...+.++|+.||.+++|....++.+..+... ...|+.+.|+.+|+.+..+..||.+.+|.+. .++...
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s 2287 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTS 2287 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccceec
Confidence 45677777888889999999999999999888877665433 3589999999999999999999999999986 444444
Q ss_pred cccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC-ceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 015490 247 LAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT-WKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDIS 325 (406)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~ 325 (406)
.+.|. ......+|-... +........++.+.+||..- +..-.....|.+.++++++-|..+.|++|+.+|.|+
T Consensus 2288 ~qchn-k~~~Df~Fi~s~-----~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~ 2361 (2439)
T KOG1064|consen 2288 WQCHN-KALSDFRFIGSL-----LATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVC 2361 (2439)
T ss_pred cccCC-ccccceeeeehh-----hhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEE
Confidence 44443 334556665522 22334446788999999642 222222278999999999999999999999999999
Q ss_pred EEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCchH
Q 015490 326 IIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLNL 383 (406)
Q Consensus 326 i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 383 (406)
+||++..+.+..++. +. ...++++|+..|.++||++.....+..+|.
T Consensus 2362 l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2362 LFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred EeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 999998877766641 34 457899999999999999999887777764
No 265
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.28 E-value=2.7e-08 Score=88.34 Aligned_cols=260 Identities=14% Similarity=0.130 Sum_probs=166.1
Q ss_pred EEEEEecCCCCccccceeEEecCCCC--ce-EEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccc
Q 015490 90 LLSHFDFASNSLSDQPVAELRTDSDL--PY-RMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN 166 (406)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~h~~~--v~-~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (406)
.+..||..+.. .+..+.+-..+ .. -+.|+-+..+++-....++.|+.+ ..... ......++
T Consensus 109 ~~~vwd~~sg~----iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~----------~~p~~~lr- 172 (561)
T COG5354 109 NVFVWDIASGM----IVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIE----------EHPFKNLR- 172 (561)
T ss_pred ceeEEeccCce----eEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccc----------cCchhhcc-
Confidence 45556655532 33333333333 33 567777777766555667777665 21111 11111111
Q ss_pred cCcEEEEEECCCC--CEEEE-----eeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEe-----------
Q 015490 167 VGQQLALTFDSEG--TIFAA-----GSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLG----------- 228 (406)
Q Consensus 167 ~~~v~~~~~s~~g--~~l~~-----~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s----------- 228 (406)
...+....|+|.+ ..||+ ....+.+++|.+..+..+....--...=..+.|++.|++|++--
T Consensus 173 ~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyf 252 (561)
T COG5354 173 PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYF 252 (561)
T ss_pred ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeeccccee
Confidence 2467788888864 34443 35678999999976654433222122225688999999776431
Q ss_pred CCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEE
Q 015490 229 NRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNV 308 (406)
Q Consensus 229 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 308 (406)
.+.+++|++++........ ...++|...+|.|.++. |.+..|.....+.++|++.. ... ......=..+.|
T Consensus 253 gesnLyl~~~~e~~i~V~~--~~~~pVhdf~W~p~S~~----F~vi~g~~pa~~s~~~lr~N-l~~--~~Pe~~rNT~~f 323 (561)
T COG5354 253 GESNLYLLRITERSIPVEK--DLKDPVHDFTWEPLSSR----FAVISGYMPASVSVFDLRGN-LRF--YFPEQKRNTIFF 323 (561)
T ss_pred ccceEEEEeecccccceec--cccccceeeeecccCCc----eeEEecccccceeecccccc-eEE--ecCCcccccccc
Confidence 1356888888743332222 33567899999999997 67777788999999999875 332 233344567899
Q ss_pred cCCCCEEEEEeC---CCcEEEEECCCceEEE-EeecccccceEEEEEcCCCCeEEEEE------CCCcEEEEEecCCcC
Q 015490 309 SADGKLLAVGTA---SGDISIIDSSSLQVRT-AVKKAHLGIVTALAFSYDSRALVSAS------MDSSVRVTVIEDKKK 377 (406)
Q Consensus 309 sp~~~~l~~~~~---dg~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~s~s------~dg~i~iw~~~~~~~ 377 (406)
+|.++++++++- .|.+.+||........ .+. + ....-+.|+||++++.+.. .|..|.|||+...+.
T Consensus 324 sp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~-~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 324 SPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN-G--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred cCcccEEEEecCCccccceEEeccCCceEEEEEee-c--CCceEeeccCCceEEEecCCCcccccCcceEEEEecCchh
Confidence 999999998776 4789999987655444 443 2 2345678999999987764 578899999976554
No 266
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.28 E-value=1.4e-10 Score=110.69 Aligned_cols=196 Identities=12% Similarity=0.016 Sum_probs=152.2
Q ss_pred EEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCC----ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee
Q 015490 170 QLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHA----SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT 245 (406)
Q Consensus 170 v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~ 245 (406)
+....+.-+.+.++.++.++.+.+||...+.....+..... ...-+.++++.-++++|+.-+.|.+|+....+...
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~ 169 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI 169 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc
Confidence 34455556777888899999999999987776666544333 12223446677789999999999999987433333
Q ss_pred ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEE-EeeecCCCeEEEEEcCCCCEEEEEeCCCcE
Q 015490 246 PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIR-TKQVVREPVSSFNVSADGKLLAVGTASGDI 324 (406)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i 324 (406)
.+.+| ...+-++.|+-++++ +++.++|..+++|++.+.+... ..-+|...+..++|+|+ .+++++.|.+.
T Consensus 170 ~l~GH-eG~iF~i~~s~dg~~------i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctc 240 (967)
T KOG0974|consen 170 RLKGH-EGSIFSIVTSLDGRY------IASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTC 240 (967)
T ss_pred eeccc-CCceEEEEEccCCcE------EEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEE
Confidence 45554 445678999999984 5677899999999999988766 66678899999999998 89999999999
Q ss_pred EEEECCCceEEEEeecccc-cceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490 325 SIIDSSSLQVRTAVKKAHL-GIVTALAFSYDSRALVSASMDSSVRVTVIEDKK 376 (406)
Q Consensus 325 ~i~d~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~ 376 (406)
++|+.. +..+..+. .|. ..++.++..++...++|++.|+.+++|++....
T Consensus 241 rvW~~~-~~~l~~y~-~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 241 RVWGVN-GTQLEVYD-EHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred EEEecc-cceehhhh-hhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 999765 44444664 565 458999999999999999999999999987543
No 267
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.27 E-value=3.5e-09 Score=93.08 Aligned_cols=226 Identities=15% Similarity=0.110 Sum_probs=151.4
Q ss_pred EccCCCeEEEEecCCeEEEEEecccccceeeccee-ccceeeecccccCcEEEEE-ECC-CCCEEEEeeCCCeEEEEeCC
Q 015490 121 IHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVK-ISEKVLSQLENVGQQLALT-FDS-EGTIFAAGSENGNLRVFKWP 197 (406)
Q Consensus 121 ~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~-~s~-~g~~l~~~~~dg~i~vwd~~ 197 (406)
.+.||+.++....+++.+|+-+... +.++.+. +.......-..-.+..-+. |++ +|.+++..+. |...|.+..
T Consensus 274 ~nsDGkrIvFq~~GdIylydP~td~---lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~ 349 (668)
T COG4946 274 ANSDGKRIVFQNAGDIYLYDPETDS---LEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPW 349 (668)
T ss_pred cCCCCcEEEEecCCcEEEeCCCcCc---ceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCC
Confidence 3568888888777765555433322 2222221 0000000000001111122 444 6788888875 677777755
Q ss_pred CcceEeeeeccCCceeEEEEccCCCEEEEEeCCC-CEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEc
Q 015490 198 SLEIILNESEAHASVKDLSFSPDGKFLVSLGNRG-PGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAIT 276 (406)
Q Consensus 198 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (406)
.+-.+. .++...|.-..+..+++-++.|..|| .+-|+|.++++...... .-..+.++..+++|+. ++.+
T Consensus 350 ~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~--~lg~I~av~vs~dGK~------~vva 419 (668)
T COG4946 350 DGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK--DLGNIEAVKVSPDGKK------VVVA 419 (668)
T ss_pred CCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC--CccceEEEEEcCCCcE------EEEE
Confidence 443332 34555788888888888899999998 89999998887554433 2335789999999995 4555
Q ss_pred CCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCC----cEEEEECCCceEEEEeecccccceEEEEEc
Q 015490 277 DRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASG----DISIIDSSSLQVRTAVKKAHLGIVTALAFS 352 (406)
Q Consensus 277 ~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s 352 (406)
.....|.++|+.+++....-+...+-|+.+.|||+++++|-+--+| .|+++|+.+++...... ..+.=.+.+|.
T Consensus 420 Ndr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT--~ta~DfsPaFD 497 (668)
T COG4946 420 NDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT--PTAYDFSPAFD 497 (668)
T ss_pred cCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC--CcccccCcccC
Confidence 7788999999999887555555567899999999999999887665 59999999888766543 44445677899
Q ss_pred CCCCeEEEEE
Q 015490 353 YDSRALVSAS 362 (406)
Q Consensus 353 p~~~~l~s~s 362 (406)
||+++|.--+
T Consensus 498 ~d~ryLYfLs 507 (668)
T COG4946 498 PDGRYLYFLS 507 (668)
T ss_pred CCCcEEEEEe
Confidence 9999886544
No 268
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.26 E-value=4.2e-09 Score=87.06 Aligned_cols=201 Identities=14% Similarity=0.142 Sum_probs=140.7
Q ss_pred cCcEEEEEECC---CCC-EEEEeeCCCeEEEEeCCCcceEeeeeccCC------ceeEEEEccCCCEEEEEeCCCCEEEE
Q 015490 167 VGQQLALTFDS---EGT-IFAAGSENGNLRVFKWPSLEIILNESEAHA------SVKDLSFSPDGKFLVSLGNRGPGRVW 236 (406)
Q Consensus 167 ~~~v~~~~~s~---~g~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~------~i~~~~~s~~~~~l~s~s~d~~i~iw 236 (406)
+..+..+.|.. +|. .++-+..+|.|.++..........+.+-.. ...++.|++.+..++++..+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 35566677753 444 556667789999998765444433333222 24578899999999999999999876
Q ss_pred EcCCCeeee--ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC-ceEEEE-eeecCCCeEEEEEcC-C
Q 015490 237 DLASSAVAT--PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT-WKRIRT-KQVVREPVSSFNVSA-D 311 (406)
Q Consensus 237 d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~-~~~~~~-~~~~~~~i~~~~~sp-~ 311 (406)
+........ .++. |.-...-+.|+..... ++.+|++|+.+..||++. .+.+.. .+.|...|.++.-+| .
T Consensus 149 ~~t~~~le~vq~wk~-He~E~Wta~f~~~~pn-----lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~ 222 (339)
T KOG0280|consen 149 YETEMVLEKVQTWKV-HEFEAWTAKFSDKEPN-----LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPK 222 (339)
T ss_pred ecceeeeeecccccc-cceeeeeeecccCCCc-----eEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCC
Confidence 665544433 4444 3445667888877776 678899999999999993 333333 456778899998887 6
Q ss_pred CCEEEEEeCCCcEEEEECCC-ceEEEEeecccccceEEEEEcCC--CCeEEEEECCCcEEEEEecCCc
Q 015490 312 GKLLAVGTASGDISIIDSSS-LQVRTAVKKAHLGIVTALAFSYD--SRALVSASMDSSVRVTVIEDKK 376 (406)
Q Consensus 312 ~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~sp~--~~~l~s~s~dg~i~iw~~~~~~ 376 (406)
+.+|++|+.|-.|++||.++ ++++..-. -.+.|+.+.++|. ++.|+++-.+| .+|-+.+.+.
T Consensus 223 ~~~I~TGsYDe~i~~~DtRnm~kPl~~~~--v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~ 287 (339)
T KOG0280|consen 223 PTYIATGSYDECIRVLDTRNMGKPLFKAK--VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKV 287 (339)
T ss_pred CceEEEeccccceeeeehhcccCccccCc--cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccc
Confidence 88999999999999999985 56666543 5588999999995 33444443333 6677766543
No 269
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.25 E-value=1.5e-09 Score=96.10 Aligned_cols=246 Identities=14% Similarity=0.111 Sum_probs=169.6
Q ss_pred CCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCC---
Q 015490 112 DSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSEN--- 188 (406)
Q Consensus 112 h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d--- 188 (406)
-.-++..++|||.|.+|++..-..+.+|.-.... .+..+ -+..|..+.|||.+++|.+=+..
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~--------------~l~~~-~~~~V~~~~fSP~~kYL~tw~~~pi~ 95 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKA--------------KLVRF-RHPDVKYLDFSPNEKYLVTWSREPII 95 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccchh--------------heeee-ecCCceecccCcccceeeeeccCCcc
Confidence 5567889999999999998877777887544321 11112 34578899999999999986442
Q ss_pred ------------CeEEEEeCCCcceEeeeeccCCc--ee-EEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcc
Q 015490 189 ------------GNLRVFKWPSLEIILNESEAHAS--VK-DLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDE 253 (406)
Q Consensus 189 ------------g~i~vwd~~~~~~~~~~~~~~~~--i~-~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~ 253 (406)
..+.+||+.++..+..+.....+ .+ -+.|+-+.+++|-.. ...++|+++...-....+..-...
T Consensus 96 ~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~t~n~~~~p~~~lr~~ 174 (561)
T COG5354 96 EPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEITDNIEEHPFKNLRPV 174 (561)
T ss_pred ChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEecCCccccCchhhcccc
Confidence 35999999999998887766553 44 688998888777663 447999997322222222222234
Q ss_pred eEEEEEEEcCCCCceEEEE-EEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC-----------C
Q 015490 254 LFASCRFSPLNNEDYVLYI-AAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA-----------S 321 (406)
Q Consensus 254 ~~~~~~~~~~~~~~~~l~~-~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-----------d 321 (406)
.+....|+|.+++..+.++ --..+..+.+++|.+...+.+.+.......-..+.|.+.|++|++-.. .
T Consensus 175 gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfge 254 (561)
T COG5354 175 GILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGE 254 (561)
T ss_pred ceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceecc
Confidence 5778889998766442222 223456789999999877766665544444468999999998775321 2
Q ss_pred CcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEE--CCCcEEEEEecCC
Q 015490 322 GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSAS--MDSSVRVTVIEDK 375 (406)
Q Consensus 322 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s--~dg~i~iw~~~~~ 375 (406)
..++|+++......... ...++|...+|.|.++.+++++ .+..+.++|++..
T Consensus 255 snLyl~~~~e~~i~V~~--~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 255 SNLYLLRITERSIPVEK--DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred ceEEEEeecccccceec--cccccceeeeecccCCceeEEecccccceeecccccc
Confidence 45888888744433332 4678999999999988776554 6778888888654
No 270
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.25 E-value=2.3e-08 Score=100.43 Aligned_cols=201 Identities=16% Similarity=0.196 Sum_probs=126.4
Q ss_pred CcEEEEEECCCCCEEEEeeC---C---CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeC---CCCEEEEEc
Q 015490 168 GQQLALTFDSEGTIFAAGSE---N---GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGN---RGPGRVWDL 238 (406)
Q Consensus 168 ~~v~~~~~s~~g~~l~~~~~---d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~---d~~i~iwd~ 238 (406)
+.-..++|-.||++||+.+. . ..++||+ +.|.....-..-.+--.+++|.|.|++||+... ...|.+|.-
T Consensus 210 d~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr 288 (928)
T PF04762_consen 210 DGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER 288 (928)
T ss_pred CCceEEEECCCCcEEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec
Confidence 34567999999999998764 2 4799999 446544333333333467999999999998864 345666664
Q ss_pred CCCeeeeeccc---CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceE--EEEeeec-CCCeEEEEEcCC-
Q 015490 239 ASSAVATPLAK---ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR--IRTKQVV-REPVSSFNVSAD- 311 (406)
Q Consensus 239 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~--~~~~~~~-~~~i~~~~~sp~- 311 (406)
+ |-.-..+.. .....+..+.|++++.- | +..-.+ .|.+|-..+..- ...+... ...+..+.|+|.
T Consensus 289 N-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~i---L---Av~~~~-~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~ 360 (928)
T PF04762_consen 289 N-GLRHGEFTLRFDPEEEKVIELAWNSDSEI---L---AVWLED-RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEK 360 (928)
T ss_pred C-CcEeeeEecCCCCCCceeeEEEECCCCCE---E---EEEecC-CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCC
Confidence 3 322222221 34556889999999983 2 222223 399998887553 2222222 233455999994
Q ss_pred CCEEEEEeCCCcEEEEECC----Cc--------eEEEEee----------------------cccccceEEEEEcCCCCe
Q 015490 312 GKLLAVGTASGDISIIDSS----SL--------QVRTAVK----------------------KAHLGIVTALAFSYDSRA 357 (406)
Q Consensus 312 ~~~l~~~~~dg~i~i~d~~----~~--------~~~~~~~----------------------~~~~~~v~~~~~sp~~~~ 357 (406)
...|.+.+.+|.+..++.. .+ ..+..+. -....+|.+++|++++..
T Consensus 361 p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~ 440 (928)
T PF04762_consen 361 PLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSR 440 (928)
T ss_pred CCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCe
Confidence 4456666665666554431 11 0111110 123467999999999888
Q ss_pred EEEEECCCcEEEEEecCCcC
Q 015490 358 LVSASMDSSVRVTVIEDKKK 377 (406)
Q Consensus 358 l~s~s~dg~i~iw~~~~~~~ 377 (406)
+++-..||.|.+|.......
T Consensus 441 ~avl~~d~~l~~~~~~~~~~ 460 (928)
T PF04762_consen 441 FAVLTSDGSLSIYEWDLKNM 460 (928)
T ss_pred EEEEECCCCEEEEEecCCCc
Confidence 99999999999999765443
No 271
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.23 E-value=2e-08 Score=88.91 Aligned_cols=223 Identities=17% Similarity=0.098 Sum_probs=131.6
Q ss_pred eEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC----------CCeEEEEeCCCcceEeee
Q 015490 136 CRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE----------NGNLRVFKWPSLEIILNE 205 (406)
Q Consensus 136 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----------dg~i~vwd~~~~~~~~~~ 205 (406)
.+++.+|..+.+.+.. +.....-..+ +||||+.|+++.. +..|.+||..+.+.+..+
T Consensus 27 ~~v~ViD~~~~~v~g~------------i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i 93 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGM------------TDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADI 93 (352)
T ss_pred ceEEEEECCCCEEEEE------------EEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEE
Confidence 4666677664443333 2222222334 9999998887754 789999999999988777
Q ss_pred eccCC-------ceeEEEEccCCCEEEEEe-C-CCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEc
Q 015490 206 SEAHA-------SVKDLSFSPDGKFLVSLG-N-RGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAIT 276 (406)
Q Consensus 206 ~~~~~-------~i~~~~~s~~~~~l~s~s-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (406)
..... ....++++|||++|++.. . +..+.+.|+.+++.+..+.......+ ...+. ... .+.
T Consensus 94 ~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~v--y~t~e-~~~-----~~~-- 163 (352)
T TIGR02658 94 ELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHI--FPTAN-DTF-----FMH-- 163 (352)
T ss_pred ccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEE--EEecC-Ccc-----EEE--
Confidence 64322 234789999999998776 3 78999999999999888775432221 11111 111 111
Q ss_pred CCCcEEEEEeCCC-ce-EEEEeee-cC--CCe-EEEEEcC-CCCEEEEEeCCCcEEEEECCCc-----eEEEEeecc---
Q 015490 277 DRGASIVTWNTTT-WK-RIRTKQV-VR--EPV-SSFNVSA-DGKLLAVGTASGDISIIDSSSL-----QVRTAVKKA--- 341 (406)
Q Consensus 277 ~~~~~i~~~d~~~-~~-~~~~~~~-~~--~~i-~~~~~sp-~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~--- 341 (406)
+.|+......+.. ++ ....... +. .++ ..-.|.+ +|+++.+..+ |+|.+.|+... .....+...
T Consensus 164 ~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~ 242 (352)
T TIGR02658 164 CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKA 242 (352)
T ss_pred eecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccc
Confidence 1233322222111 11 1111110 00 000 0113455 8888887776 99999996432 222222101
Q ss_pred ---cccceEEEEEcCCCCeEEEEE----------CCCcEEEEEecCCcCCCCch
Q 015490 342 ---HLGIVTALAFSYDSRALVSAS----------MDSSVRVTVIEDKKKSGGLN 382 (406)
Q Consensus 342 ---~~~~v~~~~~sp~~~~l~s~s----------~dg~i~iw~~~~~~~~~~~~ 382 (406)
..+.+.-++++|+++.++... ..+.|.++|..+++.++.++
T Consensus 243 ~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~ 296 (352)
T TIGR02658 243 DGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE 296 (352)
T ss_pred cccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe
Confidence 223344599999998887743 12479999999998877654
No 272
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=3.5e-09 Score=97.54 Aligned_cols=279 Identities=11% Similarity=0.076 Sum_probs=170.7
Q ss_pred CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccc---------cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeE
Q 015490 68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSD---------QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCR 137 (406)
Q Consensus 68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~---------~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~ 137 (406)
..++++.+|..| .+.+..++........ ..-+++.||.+.|.-+.|+.+.+.|.++. +|-+.
T Consensus 25 e~gyIAcgG~dG--------lLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIi 96 (1189)
T KOG2041|consen 25 ESGYIACGGADG--------LLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLII 96 (1189)
T ss_pred cCCeEEeccccc--------eeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEE
Confidence 567777665444 3344555443322211 22357899999999999999888877764 66666
Q ss_pred EEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEE
Q 015490 138 LFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSF 217 (406)
Q Consensus 138 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~ 217 (406)
+|-+-. +.-... .-.-+..+-|.+++|+.||..++..-.||.|.|=.++..+.-..-. .......+.|
T Consensus 97 VWmlyk--gsW~EE---------MiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeL-kg~~l~hv~w 164 (1189)
T KOG2041|consen 97 VWMLYK--GSWCEE---------MINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKEL-KGQLLAHVLW 164 (1189)
T ss_pred EEeeec--ccHHHH---------HhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhc-chheccceee
Confidence 665432 211100 1111233568999999999999999999999887775443322111 1113467899
Q ss_pred ccCCCEEEEEeCCCCEEEEEcCCCe-------eeeeccc---CCcceEEEEEEE--------cCCCCceEEEEEEEcCCC
Q 015490 218 SPDGKFLVSLGNRGPGRVWDLASSA-------VATPLAK---ENDELFASCRFS--------PLNNEDYVLYIAAITDRG 279 (406)
Q Consensus 218 s~~~~~l~s~s~d~~i~iwd~~~~~-------~~~~~~~---~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~ 279 (406)
++|.+.++.+-..|.+.+||....- +.....+ .....+..+.|. |+.+ .++.+..+
T Consensus 165 s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP------~lavcy~n 238 (1189)
T KOG2041|consen 165 SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP------RLAVCYAN 238 (1189)
T ss_pred cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC------EEEEEEcC
Confidence 9999998888889999999975321 1011100 111124445553 2333 23444556
Q ss_pred cEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCC---------CcEEEEECCCceEEEEeecccccceEEEE
Q 015490 280 ASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAS---------GDISIIDSSSLQVRTAVKKAHLGIVTALA 350 (406)
Q Consensus 280 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 350 (406)
|.+.+..-.+......+... -.+....|+++|..||+++.+ +.|.+|.. -|..+.+++ .....|++++
T Consensus 239 Gr~QiMR~eND~~Pvv~dtg-m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlk-vpg~~It~ls 315 (1189)
T KOG2041|consen 239 GRMQIMRSENDPEPVVVDTG-MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLK-VPGSCITGLS 315 (1189)
T ss_pred ceehhhhhcCCCCCeEEecc-cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEe-cCCceeeeeE
Confidence 77776654433222222222 567899999999999998764 24666653 477777775 6677899999
Q ss_pred EcCCCCeEEEEECCCcEEEEEecCCc
Q 015490 351 FSYDSRALVSASMDSSVRVTVIEDKK 376 (406)
Q Consensus 351 ~sp~~~~l~s~s~dg~i~iw~~~~~~ 376 (406)
|-..|-.++.+ .|+.|++=+++..-
T Consensus 316 WEg~gLriA~A-vdsfiyfanIRP~y 340 (1189)
T KOG2041|consen 316 WEGTGLRIAIA-VDSFIYFANIRPEY 340 (1189)
T ss_pred EcCCceEEEEE-ecceEEEEeecccc
Confidence 98776555543 45666665555433
No 273
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=7.8e-09 Score=92.75 Aligned_cols=221 Identities=13% Similarity=0.204 Sum_probs=144.3
Q ss_pred ecCCCCceEEEEccCCC-eEEEE-------ecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCC-
Q 015490 110 RTDSDLPYRMAIHPHGD-GIICA-------LQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGT- 180 (406)
Q Consensus 110 ~~h~~~v~~~~~sp~~~-~l~~~-------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~- 180 (406)
.-|...+..+.+||.+. ..++. .-..++||.+......... ..+++- ...-..+.|++-|.
T Consensus 162 kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~---------a~ksFF-kadkvqm~WN~~gt~ 231 (566)
T KOG2315|consen 162 KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPV---------ANKSFF-KADKVQMKWNKLGTA 231 (566)
T ss_pred eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchh---------hhcccc-ccceeEEEeccCCce
Confidence 34678889999999743 33322 1456788776522111000 001111 11223577887664
Q ss_pred EEEEeeC-----------CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEE--eCCCCEEEEEcCCCeeeeec
Q 015490 181 IFAAGSE-----------NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSL--GNRGPGRVWDLASSAVATPL 247 (406)
Q Consensus 181 ~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~--s~d~~i~iwd~~~~~~~~~~ 247 (406)
+|+.++. ..++++++++...+. .-....++|.++.|+|+++.++++ -.-..+.|||++ +.++..+
T Consensus 232 LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~-V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df 309 (566)
T KOG2315|consen 232 LLVLASTDVDKTNASYYGEQTLYLLATQGESVS-VPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF 309 (566)
T ss_pred EEEEEEEeecCCCccccccceEEEEEecCceEE-EecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC
Confidence 3332221 246888888733333 333446799999999999877665 346689999995 5666666
Q ss_pred ccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC------C
Q 015490 248 AKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA------S 321 (406)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~------d 321 (406)
... +-..+-|+|.|+ +++++..|.-.|.|-+||..+.+++..+.... .+-+.|+|||+++++++. |
T Consensus 310 ~eg---pRN~~~fnp~g~---ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvd 381 (566)
T KOG2315|consen 310 PEG---PRNTAFFNPHGN---IILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVD 381 (566)
T ss_pred CCC---CccceEECCCCC---EEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEec
Confidence 433 345788999998 46677777888999999999988888887654 467899999999999875 6
Q ss_pred CcEEEEECCCceEEEEeecccccceEEEEEcC
Q 015490 322 GDISIIDSSSLQVRTAVKKAHLGIVTALAFSY 353 (406)
Q Consensus 322 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp 353 (406)
+.++||+.. |..+.... -......+.|-|
T Consensus 382 Ng~Kiwhyt-G~~l~~~~--f~sEL~qv~W~P 410 (566)
T KOG2315|consen 382 NGIKIWHYT-GSLLHEKM--FKSELLQVEWRP 410 (566)
T ss_pred CCeEEEEec-Cceeehhh--hhHhHhheeeee
Confidence 789999985 55544432 122567777776
No 274
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=2.9e-10 Score=99.92 Aligned_cols=207 Identities=19% Similarity=0.174 Sum_probs=139.5
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCC-ceeEEEEcc--CCCEEEEEeCCCCEEEEEcCC-C
Q 015490 166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHA-SVKDLSFSP--DGKFLVSLGNRGPGRVWDLAS-S 241 (406)
Q Consensus 166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~--~~~~l~s~s~d~~i~iwd~~~-~ 241 (406)
|.+.|..+.|+..|..|++|+.|..|.+||+..+.....+...|. .|..-.|-| +.+.+++++.||.+++=.+.. +
T Consensus 141 H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~ 220 (559)
T KOG1334|consen 141 HKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETG 220 (559)
T ss_pred CCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecccc
Confidence 568899999999999999999999999999998888777765444 777777877 356799999999999876543 2
Q ss_pred eee-eecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEE--------------------------
Q 015490 242 AVA-TPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIR-------------------------- 294 (406)
Q Consensus 242 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~-------------------------- 294 (406)
.+. ......+...+..++.-|+..+ .+.+++.|+.+.-+|+++..+..
T Consensus 221 ~~e~t~rl~~h~g~vhklav~p~sp~-----~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~ 295 (559)
T KOG1334|consen 221 YVENTKRLAPHEGPVHKLAVEPDSPK-----PFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTN 295 (559)
T ss_pred ceecceecccccCccceeeecCCCCC-----cccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcc
Confidence 222 1222334455666777666664 33444555555555554322111
Q ss_pred -----------------------------Eeee------cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC--Cc-----
Q 015490 295 -----------------------------TKQV------VREPVSSFNVSADGKLLAVGTASGDISIIDSS--SL----- 332 (406)
Q Consensus 295 -----------------------------~~~~------~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~--~~----- 332 (406)
.+.. ..-.|++++|+.++.-|.+...|-.|+++.-. .+
T Consensus 296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~ 375 (559)
T KOG1334|consen 296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDP 375 (559)
T ss_pred ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCC
Confidence 0100 01257888888777767777777788888432 12
Q ss_pred -----eEEEEeeccccc--ceEEEEE-cCCCCeEEEEECCCcEEEEEecCCcC
Q 015490 333 -----QVRTAVKKAHLG--IVTALAF-SYDSRALVSASMDSSVRVTVIEDKKK 377 (406)
Q Consensus 333 -----~~~~~~~~~~~~--~v~~~~~-sp~~~~l~s~s~dg~i~iw~~~~~~~ 377 (406)
.......++|.. .|..+-| -|...|+++||.=|.|.||+-.+++.
T Consensus 376 ~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ei 428 (559)
T KOG1334|consen 376 SSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEI 428 (559)
T ss_pred CcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHH
Confidence 222231236754 3666654 67789999999999999999888765
No 275
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.16 E-value=1.9e-08 Score=90.89 Aligned_cols=144 Identities=15% Similarity=0.107 Sum_probs=117.4
Q ss_pred CCEEEEeeCCCeEEEEeCCCcceEeeee--ccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEE
Q 015490 179 GTIFAAGSENGNLRVFKWPSLEIILNES--EAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFA 256 (406)
Q Consensus 179 g~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 256 (406)
-..++-|...|.|.+|++..++....+. .|.+.|.++.++.+-..|.+++.|+.+..|+....+..+...... ..+.
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~-~~~~ 148 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQK-PLVS 148 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCC-Cccc
Confidence 3468888899999999999998887776 355699999999998899999999999999999988888777543 3467
Q ss_pred EEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCC-----CCEEEEEeC-CCcEEEEECC
Q 015490 257 SCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSAD-----GKLLAVGTA-SGDISIIDSS 330 (406)
Q Consensus 257 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~-----~~~l~~~~~-dg~i~i~d~~ 330 (406)
+++.+|++.. +++ ..+.|.+||+.+.+.+..|.+|.++|+++.|--+ |.++.++.. +.-+.+|-..
T Consensus 149 sl~is~D~~~------l~~--as~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 149 SLCISPDGKI------LLT--ASRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred eEEEcCCCCE------EEe--ccceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 8999999873 232 2578999999999999999999999999999876 677766543 4556777654
Q ss_pred C
Q 015490 331 S 331 (406)
Q Consensus 331 ~ 331 (406)
.
T Consensus 221 ~ 221 (541)
T KOG4547|consen 221 K 221 (541)
T ss_pred c
Confidence 3
No 276
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.16 E-value=7.7e-08 Score=82.30 Aligned_cols=233 Identities=16% Similarity=0.150 Sum_probs=146.5
Q ss_pred CceEEEEccCCCeEE-EEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEee-----CC
Q 015490 115 LPYRMAIHPHGDGII-CALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGS-----EN 188 (406)
Q Consensus 115 ~v~~~~~sp~~~~l~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----~d 188 (406)
....++.+|+....+ .+-.-.-.++.+|..++.....+..+ .-+.|.+ ...||+||++|++.- ..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~----~gRHFyG-----Hg~fs~dG~~LytTEnd~~~g~ 76 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP----PGRHFYG-----HGVFSPDGRLLYTTENDYETGR 76 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC----CCCEEec-----CEEEcCCCCEEEEeccccCCCc
Confidence 345778888555444 44422225666777766655544321 1112222 358999999999863 35
Q ss_pred CeEEEEeCC-CcceEeeeeccCCceeEEEEccCCCEEEEEeC------------------CCCEEEEEcCCCeeeeeccc
Q 015490 189 GNLRVFKWP-SLEIILNESEAHASVKDLSFSPDGKFLVSLGN------------------RGPGRVWDLASSAVATPLAK 249 (406)
Q Consensus 189 g~i~vwd~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~------------------d~~i~iwd~~~~~~~~~~~~ 249 (406)
|.|-|||.. +.+.+..+..+.-.-..+.+.|||+.|+++.. +.++...|..+|+.+.+...
T Consensus 77 G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~L 156 (305)
T PF07433_consen 77 GVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVEL 156 (305)
T ss_pred EEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeec
Confidence 899999998 55666666666557788999999988887632 23566677888887766432
Q ss_pred ---CCcceEEEEEEEcCCCCceEEEEEEEcCC-----CcEEEEEeCCCceEEEEee-------ecCCCeEEEEEcCCCCE
Q 015490 250 ---ENDELFASCRFSPLNNEDYVLYIAAITDR-----GASIVTWNTTTWKRIRTKQ-------VVREPVSSFNVSADGKL 314 (406)
Q Consensus 250 ---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~i~~~d~~~~~~~~~~~-------~~~~~i~~~~~sp~~~~ 314 (406)
.+...+..+++.+++.- + +...-.. --.|.+++... .+..+. .-.+.+-++++++++.+
T Consensus 157 p~~~~~lSiRHLa~~~~G~V---~-~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ 230 (305)
T PF07433_consen 157 PPDLHQLSIRHLAVDGDGTV---A-FAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRL 230 (305)
T ss_pred CccccccceeeEEecCCCcE---E-EEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCE
Confidence 23445888888888762 1 1111000 11233333332 122221 12468999999999998
Q ss_pred EEEEeC-CCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcE
Q 015490 315 LAVGTA-SGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSV 367 (406)
Q Consensus 315 l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i 367 (406)
+++.+- .+.+.+||..+++.+.... -..+..++-.+++ +++|.+ .|.+
T Consensus 231 ia~tsPrGg~~~~~d~~tg~~~~~~~---l~D~cGva~~~~~-f~~ssG-~G~~ 279 (305)
T PF07433_consen 231 IAVTSPRGGRVAVWDAATGRLLGSVP---LPDACGVAPTDDG-FLVSSG-QGQL 279 (305)
T ss_pred EEEECCCCCEEEEEECCCCCEeeccc---cCceeeeeecCCc-eEEeCC-CccE
Confidence 877766 6779999999999887763 2346677777766 555544 4543
No 277
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.15 E-value=1.3e-07 Score=96.79 Aligned_cols=211 Identities=15% Similarity=0.113 Sum_probs=130.4
Q ss_pred CCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecc--------cccCcEEEEEECC-CCCEEEE
Q 015490 114 DLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQL--------ENVGQQLALTFDS-EGTIFAA 184 (406)
Q Consensus 114 ~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~s~-~g~~l~~ 184 (406)
.....+++.+++..|+++....-+|..++..++. +..+.. ........ ..-.....++|+| ++.++++
T Consensus 624 ~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag--~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVa 700 (1057)
T PLN02919 624 NRPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAG--NGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIA 700 (1057)
T ss_pred CCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEec--cCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEE
Confidence 3478999999988777765322345555543322 211110 00000000 0012346789999 5666677
Q ss_pred eeCCCeEEEEeCCCcceEeeeecc---------------CCceeEEEEccCCCEEE-EEeCCCCEEEEEcCCCeeeeecc
Q 015490 185 GSENGNLRVFKWPSLEIILNESEA---------------HASVKDLSFSPDGKFLV-SLGNRGPGRVWDLASSAVATPLA 248 (406)
Q Consensus 185 ~~~dg~i~vwd~~~~~~~~~~~~~---------------~~~i~~~~~s~~~~~l~-s~s~d~~i~iwd~~~~~~~~~~~ 248 (406)
.+.++.|++||..++.... +.+. -.....++++|+++.|+ +-+.++.|++||+.++.......
T Consensus 701 d~~~~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~g 779 (1057)
T PLN02919 701 MAGQHQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAG 779 (1057)
T ss_pred ECCCCeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEe
Confidence 7778999999987765431 1110 11356799999998555 44567899999998765321110
Q ss_pred -------------cC-------CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeee----------
Q 015490 249 -------------KE-------NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV---------- 298 (406)
Q Consensus 249 -------------~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~---------- 298 (406)
.. .......+++++++. +.++...++.|++||..++........
T Consensus 780 g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~------LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~ 853 (1057)
T PLN02919 780 GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ------IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKA 853 (1057)
T ss_pred cccccCcccccccCCCCchhhhhccCCceeeEeCCCc------EEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcc
Confidence 00 001234788999886 334456789999999988765432211
Q ss_pred ---cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceE
Q 015490 299 ---VREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQV 334 (406)
Q Consensus 299 ---~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~ 334 (406)
.-.....++++++|+.+++-+.++.|++||+.+++.
T Consensus 854 ~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 854 LKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred cccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 112467899999999888888899999999988764
No 278
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=2.5e-09 Score=98.47 Aligned_cols=239 Identities=13% Similarity=0.093 Sum_probs=165.4
Q ss_pred CceEEEEccCCCeEEEEe-cCCeEEEEEeccccccee-ecceeccceeeeccccc-CcEEEEEECCCCCEEEEeeCCCeE
Q 015490 115 LPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIR-RLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGSENGNL 191 (406)
Q Consensus 115 ~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i 191 (406)
...|++|+....++++|+ +|-+++..++..+..... .+....+-..-+++.+| ..|.-+.|+.+.+.|-+...+|.|
T Consensus 16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlI 95 (1189)
T KOG2041|consen 16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLI 95 (1189)
T ss_pred eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceE
Confidence 347999999999999998 999999888766432211 11111122333456666 779999999999999999999999
Q ss_pred EEEeCCCcceEeeeecc--CCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee-ecccCCcceEEEEEEEcCCCCce
Q 015490 192 RVFKWPSLEIILNESEA--HASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT-PLAKENDELFASCRFSPLNNEDY 268 (406)
Q Consensus 192 ~vwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 268 (406)
.||-+-.+......... .+-|.+++|+.||+.++..-.||.|.+=.+...+.-. .+++ .....+.|+++.+.
T Consensus 96 iVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg---~~l~hv~ws~D~~~-- 170 (1189)
T KOG2041|consen 96 IVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG---QLLAHVLWSEDLEQ-- 170 (1189)
T ss_pred EEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch---heccceeecccHHH--
Confidence 99999777654433332 3378999999999999999999998887775443221 2222 22447889999884
Q ss_pred EEEEEEEcCCCcEEEEEeCCCc-------eEEEEee----ecCCCeEEEEEc--------CCCCEEEEEeCCCcEEEEEC
Q 015490 269 VLYIAAITDRGASIVTWNTTTW-------KRIRTKQ----VVREPVSSFNVS--------ADGKLLAVGTASGDISIIDS 329 (406)
Q Consensus 269 ~l~~~~~~~~~~~i~~~d~~~~-------~~~~~~~----~~~~~i~~~~~s--------p~~~~l~~~~~dg~i~i~d~ 329 (406)
+..+-.+|.+.+||.+.. .+..... .....|..+.|. ||...++++-.+|.+.|..-
T Consensus 171 ----~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~ 246 (1189)
T KOG2041|consen 171 ----ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRS 246 (1189)
T ss_pred ----HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhh
Confidence 333445789999997631 1111111 112235556653 47778999999999998876
Q ss_pred CCceEEEEeecccccceEEEEEcCCCCeEEEEECC
Q 015490 330 SSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMD 364 (406)
Q Consensus 330 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d 364 (406)
.+......+. ....+..+.|+++|..|+.++.|
T Consensus 247 eND~~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 247 ENDPEPVVVD--TGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred cCCCCCeEEe--cccEeecceecCCCcEEEEccCc
Confidence 6555444443 33678899999999999998865
No 279
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.13 E-value=2.7e-10 Score=105.05 Aligned_cols=242 Identities=14% Similarity=0.181 Sum_probs=159.9
Q ss_pred CCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeeccccc--CcEEEEEECCCC--CEEEEeeCC
Q 015490 113 SDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV--GQQLALTFDSEG--TIFAAGSEN 188 (406)
Q Consensus 113 ~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~g--~~l~~~~~d 188 (406)
.+++.++.++|.|+-++.++...+.+.+++.. ..+.+.+.|. -.|..+.|+|.. .+-++....
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~i~dld~p-------------~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~ 90 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLYIIDLDDP-------------FTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSN 90 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeEEEeccCC-------------CCCceeeeccCcchhcceecccCCCCceeEEecCc
Confidence 45678899999999999888777666555542 2222233333 346678888754 344444445
Q ss_pred CeEEEEeCCC---cceEeeeeccCCceeEEEEccCCC-EEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCC
Q 015490 189 GNLRVFKWPS---LEIILNESEAHASVKDLSFSPDGK-FLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLN 264 (406)
Q Consensus 189 g~i~vwd~~~---~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (406)
..-.+|++.. ...-..+-+|..+|+++.|+|+.. .+++++-|-.+..||+++..........-......+.|+-..
T Consensus 91 qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~ 170 (1081)
T KOG0309|consen 91 QKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKD 170 (1081)
T ss_pred chhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccC
Confidence 5566888742 223334456666999999998654 788999999999999998654332221222234568888777
Q ss_pred CCceEEEEEEEcCCCcEEEEEeCCCc-eEEEEeeecCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCce---------
Q 015490 265 NEDYVLYIAAITDRGASIVTWNTTTW-KRIRTKQVVREPVSSFNVSA-DGKLLAVGTASGDISIIDSSSLQ--------- 333 (406)
Q Consensus 265 ~~~~~l~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~~~--------- 333 (406)
.. ++ ..+....|.+||.+.+ .++..+++|...+..+.|.. ....+.+.+.||+|++||.....
T Consensus 171 p~-----vl-asshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt 244 (1081)
T KOG0309|consen 171 PN-----VL-ASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT 244 (1081)
T ss_pred cc-----hh-hhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc
Confidence 65 33 3356788999999865 46777777777777777764 23456777888999999875311
Q ss_pred ----------------------------------------------EEEEeecccccceEEEEEcCCC----------Ce
Q 015490 334 ----------------------------------------------VRTAVKKAHLGIVTALAFSYDS----------RA 357 (406)
Q Consensus 334 ----------------------------------------------~~~~~~~~~~~~v~~~~~sp~~----------~~ 357 (406)
++..+ .+|...|....|-..+ -.
T Consensus 245 ~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F-~GH~D~V~eFlWR~r~e~~~d~d~rdfQ 323 (1081)
T KOG0309|consen 245 NFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTF-VGHDDVVLEFLWRKRKECDGDYDSRDFQ 323 (1081)
T ss_pred cCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeee-cCcchHHHHHhhhhcccccCCCCcccee
Confidence 12222 3666666655554321 26
Q ss_pred EEEEECCCcEEEEEecC
Q 015490 358 LVSASMDSSVRVTVIED 374 (406)
Q Consensus 358 l~s~s~dg~i~iw~~~~ 374 (406)
|+|-|.|.++++|-+.+
T Consensus 324 LVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 324 LVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred EEEeecCCceEeeeccH
Confidence 89999999999999875
No 280
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.13 E-value=7e-07 Score=76.95 Aligned_cols=219 Identities=15% Similarity=0.168 Sum_probs=136.3
Q ss_pred eEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEEC-CCCCEEEEeeCCCeEEEEe
Q 015490 117 YRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFD-SEGTIFAAGSENGNLRVFK 195 (406)
Q Consensus 117 ~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~dg~i~vwd 195 (406)
.++.|.+....|+.+.-...+|+.++..++... .+.... ...+++. +++.++ .+... .+.++|
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-------------~~~~~~-~~G~~~~~~~g~l~-v~~~~-~~~~~d 66 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-------------VIDLPG-PNGMAFDRPDGRLY-VADSG-GIAVVD 66 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEE-------------EEESSS-EEEEEEECTTSEEE-EEETT-CEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-------------EEecCC-CceEEEEccCCEEE-EEEcC-ceEEEe
Confidence 367888855555555533347888887543221 111222 6677777 665554 44444 456669
Q ss_pred CCCcceEeeeec-----cCCceeEEEEccCCCEEEEEeCC--------CCEEEEEcCCCeeeeecccCCcceEEEEEEEc
Q 015490 196 WPSLEIILNESE-----AHASVKDLSFSPDGKFLVSLGNR--------GPGRVWDLASSAVATPLAKENDELFASCRFSP 262 (406)
Q Consensus 196 ~~~~~~~~~~~~-----~~~~i~~~~~s~~~~~l~s~s~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (406)
..+++....... .....+++++.++|++.++.... |.+..++.. ++....... -.....++|+|
T Consensus 67 ~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~~~pNGi~~s~ 143 (246)
T PF08450_consen 67 PDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--LGFPNGIAFSP 143 (246)
T ss_dssp TTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--ESSEEEEEEET
T ss_pred cCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC--cccccceEECC
Confidence 888765433322 12378999999999977665543 456777776 444333322 23457899999
Q ss_pred CCCCceEEEEEEEcCCCcEEEEEeCCCce--E--EEEe-eecC--CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEE
Q 015490 263 LNNEDYVLYIAAITDRGASIVTWNTTTWK--R--IRTK-QVVR--EPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVR 335 (406)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~i~~~d~~~~~--~--~~~~-~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~ 335 (406)
+++. +.++.+..+.|..+++.... . ...+ .... +..-.+++..+|++.++....+.|.++|.+ ++.+
T Consensus 144 dg~~-----lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~ 217 (246)
T PF08450_consen 144 DGKT-----LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLL 217 (246)
T ss_dssp TSSE-----EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEE
T ss_pred cchh-----eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEE
Confidence 9985 34455678889999885321 1 1222 1222 237889999999988887788999999987 8888
Q ss_pred EEeecccccceEEEEEc-CCCCeEEEE
Q 015490 336 TAVKKAHLGIVTALAFS-YDSRALVSA 361 (406)
Q Consensus 336 ~~~~~~~~~~v~~~~~s-p~~~~l~s~ 361 (406)
..+.. ....+++++|. ++.+.|+..
T Consensus 218 ~~i~~-p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 218 REIEL-PVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEE--SSSSEEEEEEESTTSSEEEEE
T ss_pred EEEcC-CCCCEEEEEEECCCCCEEEEE
Confidence 88763 34589999994 665555443
No 281
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=2.1e-10 Score=102.41 Aligned_cols=205 Identities=14% Similarity=0.173 Sum_probs=145.3
Q ss_pred ccccc-CcEEEEEECCCCCEEEEeeCCCeEEEEeCCC-------cceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEE
Q 015490 163 QLENV-GQQLALTFDSEGTIFAAGSENGNLRVFKWPS-------LEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGR 234 (406)
Q Consensus 163 ~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~-------~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~ 234 (406)
.+.+| ..|..++--.+.+.+++++.|.+|++|.++. ..+..++..|..+|.++.|..+-++++++ |+.|+
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giH 807 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIH 807 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcce
Confidence 34344 5677666666677899999999999999853 33666778888899999999988887655 78999
Q ss_pred EEEcCCCeeeeecc-cCCcceEEEEEEEcC-CCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeee-----cCCCeEEEE
Q 015490 235 VWDLASSAVATPLA-KENDELFASCRFSPL-NNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV-----VREPVSSFN 307 (406)
Q Consensus 235 iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~-----~~~~i~~~~ 307 (406)
+||.--++.+..+. .........+..-++ .+. ++.+.++...+|+++|.+...-...++. ....+.+++
T Consensus 808 lWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~----iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 808 LWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRH----ILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred eecccccchhHhhhcCcccCCCceeEecccCcch----heeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 99987777665332 222222333444444 332 3455567788999999998776555543 345688999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEE-EEecCC
Q 015490 308 VSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV-TVIEDK 375 (406)
Q Consensus 308 ~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~i-w~~~~~ 375 (406)
..+.|++++.+-.+|.|.+.|.++|+.+..+. .-.-....++ .|..+.|+....|.++.+ |..-++
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswr-pmecdllqla-apsdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARNGKVINSWR-PMECDLLQLA-APSDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCCCceeccCC-cccchhhhhc-CchhHHHHhhcccceeEeeehhcCC
Confidence 99999999999999999999999999888774 3332333333 345566777677777777 765443
No 282
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.10 E-value=4.9e-07 Score=91.01 Aligned_cols=243 Identities=14% Similarity=0.140 Sum_probs=153.0
Q ss_pred cCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCC
Q 015490 111 TDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENG 189 (406)
Q Consensus 111 ~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 189 (406)
...+.|.++.+-++...++++. +|.+-+...+...... ..+.+. .-...|.+++||||+.+|+..+.++
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~--------~~E~VG--~vd~GI~a~~WSPD~Ella~vT~~~ 142 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED--------EIEIVG--SVDSGILAASWSPDEELLALVTGEG 142 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc--------eeEEEE--EEcCcEEEEEECCCcCEEEEEeCCC
Confidence 3457899999999998777775 7776666443321111 011111 1346899999999999999999999
Q ss_pred eEEEEeCC---------------C--------cceEeeeec------------------------cCCceeEEEEccCCC
Q 015490 190 NLRVFKWP---------------S--------LEIILNESE------------------------AHASVKDLSFSPDGK 222 (406)
Q Consensus 190 ~i~vwd~~---------------~--------~~~~~~~~~------------------------~~~~i~~~~~s~~~~ 222 (406)
++.+.+-. . |+....+.+ ....-..++|-.||.
T Consensus 143 ~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~ 222 (928)
T PF04762_consen 143 NLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGE 222 (928)
T ss_pred EEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCc
Confidence 88877521 0 000000000 112345688999999
Q ss_pred EEEEEeC---C---CCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEc--CCCcEEEEEeCCCceEEE
Q 015490 223 FLVSLGN---R---GPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAIT--DRGASIVTWNTTTWKRIR 294 (406)
Q Consensus 223 ~l~s~s~---d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~d~~~~~~~~ 294 (406)
++|+.+. . ..++||+-+ |.....-. .....-.+++|.|.|+- ++.+. .....|.+|.-+. -...
T Consensus 223 yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE-~v~gLe~~l~WrPsG~l-----IA~~q~~~~~~~VvFfErNG-Lrhg 294 (928)
T PF04762_consen 223 YFAVSSVEPETGSRRVIRVYSRE-GELQSTSE-PVDGLEGALSWRPSGNL-----IASSQRLPDRHDVVFFERNG-LRHG 294 (928)
T ss_pred EEEEEEEEcCCCceeEEEEECCC-ceEEeccc-cCCCccCCccCCCCCCE-----EEEEEEcCCCcEEEEEecCC-cEee
Confidence 9998864 2 478999975 55444333 23333457899999983 22222 2345666776543 3333
Q ss_pred Eeee----cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCce--EEEEeecccccceEEEEEcCC-CCeEEEEECCCcE
Q 015490 295 TKQV----VREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQ--VRTAVKKAHLGIVTALAFSYD-SRALVSASMDSSV 367 (406)
Q Consensus 295 ~~~~----~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~sp~-~~~l~s~s~dg~i 367 (406)
.|.. ....|..+.|++|+..||+...|. |.+|-..+.. ....+.-.....+..+.|+|. ...|...+.+|.+
T Consensus 295 eF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~ 373 (928)
T PF04762_consen 295 EFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQY 373 (928)
T ss_pred eEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcE
Confidence 3332 346789999999999999987665 9999988754 233332223344556999995 4457777776777
Q ss_pred EEEEe
Q 015490 368 RVTVI 372 (406)
Q Consensus 368 ~iw~~ 372 (406)
..+++
T Consensus 374 ~~~~~ 378 (928)
T PF04762_consen 374 EIYDF 378 (928)
T ss_pred EEEEE
Confidence 65544
No 283
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.10 E-value=5.2e-09 Score=90.21 Aligned_cols=166 Identities=15% Similarity=0.161 Sum_probs=115.3
Q ss_pred ceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC---CCeE
Q 015490 116 PYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE---NGNL 191 (406)
Q Consensus 116 v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---dg~i 191 (406)
+..+..++.+++++++. +....++.++.... ..+..........-+++.|..+......+.. ...+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~----------~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~ 134 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK----------GAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSF 134 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC----------cceeeeEeecccCcceeeeeeccceEEEEeecCCceee
Confidence 34556677888777776 44444666654321 1122222233334455555555554444444 3445
Q ss_pred EEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEE
Q 015490 192 RVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271 (406)
Q Consensus 192 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 271 (406)
.+|....+ +...+.+|-+.+++++|+||+++|+++..|..|++-....--.+..+..+|...|..++.-++.
T Consensus 135 di~s~~~~-~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~------- 206 (390)
T KOG3914|consen 135 DILSADSG-RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY------- 206 (390)
T ss_pred eeeccccc-CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-------
Confidence 55555443 3345678888999999999999999999999999998887777788888888889999888865
Q ss_pred EEEEcCCCcEEEEEeCCCceEEEEeeec
Q 015490 272 IAAITDRGASIVTWNTTTWKRIRTKQVV 299 (406)
Q Consensus 272 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 299 (406)
.+.++++|++|++||..+++.+.++...
T Consensus 207 ~LlS~sGD~tlr~Wd~~sgk~L~t~dl~ 234 (390)
T KOG3914|consen 207 LLLSGSGDKTLRLWDITSGKLLDTCDLS 234 (390)
T ss_pred eeeecCCCCcEEEEecccCCcccccchh
Confidence 3578889999999999999988766543
No 284
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.08 E-value=1.3e-08 Score=85.97 Aligned_cols=248 Identities=12% Similarity=0.129 Sum_probs=145.9
Q ss_pred cceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEE
Q 015490 104 QPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFA 183 (406)
Q Consensus 104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 183 (406)
..++....|...|..+-|+-...++++.+-+....|........ .. .+......+++.+.- .+..
T Consensus 105 ~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~-lg------------~Y~~~~~~t~~~~d~--~~~f 169 (404)
T KOG1409|consen 105 TFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNR-LG------------GYNFETPASALQFDA--LYAF 169 (404)
T ss_pred chhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCc-cc------------ceEeeccCCCCceee--EEEE
Confidence 45667778999999999998888888887444345543321111 00 000001111111111 1445
Q ss_pred EeeCCCeEEEEeC--CCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEE
Q 015490 184 AGSENGNLRVFKW--PSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFS 261 (406)
Q Consensus 184 ~~~~dg~i~vwd~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 261 (406)
.|...|.|.+..+ ..-..+..+.+|...+.+++|.+..+.|.++..|..+.+||+...+-..-....+...+..+...
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~ 249 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA 249 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence 5666666666554 34456778888999999999999999999999999999999976554443333344445556555
Q ss_pred cCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEE-e----------------------------eec-----CCCeEEEE
Q 015490 262 PLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRT-K----------------------------QVV-----REPVSSFN 307 (406)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~-~----------------------------~~~-----~~~i~~~~ 307 (406)
+..+ .+.+.+.|+.|.+||++..+.... . ..| ...+...+
T Consensus 250 ~~t~------~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c 323 (404)
T KOG1409|consen 250 QHTR------QLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKC 323 (404)
T ss_pred hhhe------eeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCccc
Confidence 5544 356678899999999975332110 0 000 01111111
Q ss_pred EcCCCCEEEEEeCCCcEEEEECC-------CceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490 308 VSADGKLLAVGTASGDISIIDSS-------SLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED 374 (406)
Q Consensus 308 ~sp~~~~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~ 374 (406)
+.+.....+-+..-.+|+-|.- +..++..+...| ..|+.+.+..+-..|+|++.|..|+|||++.
T Consensus 324 -~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~-tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 324 -SSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIK-TGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred -ccCccccccccceeEEEEecccchhhhcCCCCccccccccc-cceeEEEhhhhccceeecCCceEEEEEechh
Confidence 1111111111222234444321 112233332222 3588898888888899999999999999975
No 285
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.06 E-value=4.5e-07 Score=83.51 Aligned_cols=228 Identities=13% Similarity=0.080 Sum_probs=137.3
Q ss_pred CCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEE-EEECCCCCEEEEeeCCCeEEEEeCCCcceE
Q 015490 124 HGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLA-LTFDSEGTIFAAGSENGNLRVFKWPSLEII 202 (406)
Q Consensus 124 ~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~ 202 (406)
++..+++++. ...++-++..+++........ +.+.+ ... .+..++.++.+|.+..||.++|+.+
T Consensus 104 ~~~~v~v~~~-~g~l~ald~~tG~~~W~~~~~------------~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~ 168 (377)
T TIGR03300 104 DGGLVFVGTE-KGEVIALDAEDGKELWRAKLS------------SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERL 168 (377)
T ss_pred cCCEEEEEcC-CCEEEEEECCCCcEeeeeccC------------ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCcee
Confidence 4556666542 236777887777666553321 11111 111 2446777778999999999999887
Q ss_pred eeeeccCCce-----eEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCc---ce------E-EEEEEEcCCCCc
Q 015490 203 LNESEAHASV-----KDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKEND---EL------F-ASCRFSPLNNED 267 (406)
Q Consensus 203 ~~~~~~~~~i-----~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~---~~------~-~~~~~~~~~~~~ 267 (406)
.........+ ...... + ..++.+..++.+..+|.++|+..-....... .. + ....+. +.
T Consensus 169 W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~--~~-- 242 (377)
T TIGR03300 169 WTYSRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD--GG-- 242 (377)
T ss_pred eEEccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE--CC--
Confidence 6654332211 111222 2 4677788889999999999876543321100 00 0 011111 22
Q ss_pred eEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceE
Q 015490 268 YVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVT 347 (406)
Q Consensus 268 ~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 347 (406)
.+|+ .+.++.++.+|..+++.+...... ....+. .++..+++++.+|.+..+|..+++.+............
T Consensus 243 -~vy~---~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~s 314 (377)
T TIGR03300 243 -QVYA---VSYQGRVAALDLRSGRVLWKRDAS--SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLT 314 (377)
T ss_pred -EEEE---EEcCCEEEEEECCCCcEEEeeccC--CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccc
Confidence 1222 345789999999999877655422 112222 24678888889999999999999877654211111222
Q ss_pred EEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCch
Q 015490 348 ALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLN 382 (406)
Q Consensus 348 ~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~ 382 (406)
+... .+..|++++.+|.|+++|..+++.+.+++
T Consensus 315 sp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 315 APAV--VGGYLVVGDFEGYLHWLSREDGSFVARLK 347 (377)
T ss_pred cCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 2222 35688899999999999999998865554
No 286
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=5.6e-08 Score=90.63 Aligned_cols=265 Identities=15% Similarity=0.108 Sum_probs=166.6
Q ss_pred EEEEEecCCCCccccceeEEecCCCCceEEEEccC-----------CCeEEEEecCCeEEEEEecccccceeecceeccc
Q 015490 90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPH-----------GDGIICALQNSCRLFEWDEVENTEIRRLGVKISE 158 (406)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-----------~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 158 (406)
.+..+|.-+ .+.++.+..|...|+.+.|.|. ...+++++|-.++|..||.....
T Consensus 36 lV~VVDs~s----~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s----------- 100 (1062)
T KOG1912|consen 36 LVSVVDSRS----LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLAS----------- 100 (1062)
T ss_pred eEEEEehhh----hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhh-----------
Confidence 344455433 5788899999999999999873 23445555555566556554322
Q ss_pred eeeeccccc-CcEEEEEECC---CC-CEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEcc-CCCEEEEEeCCCC
Q 015490 159 KVLSQLENV-GQQLALTFDS---EG-TIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSP-DGKFLVSLGNRGP 232 (406)
Q Consensus 159 ~~~~~~~~~-~~v~~~~~s~---~g-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~s~d~~ 232 (406)
.+..+.++ +++..++|-+ +. ..|+.-....++.+|+..+|+...+....+....|+.+.| |.+.+...+..|.
T Consensus 101 -~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~ 179 (1062)
T KOG1912|consen 101 -VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGF 179 (1062)
T ss_pred -hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCce
Confidence 22223343 6677777765 34 4555656678999999999999988877777788899988 6667777777777
Q ss_pred EEEEEcCC-------CeeeeecccCCc---------------------c---eEEEEEEEcCCCCceEEEEEEEcCCCcE
Q 015490 233 GRVWDLAS-------SAVATPLAKEND---------------------E---LFASCRFSPLNNEDYVLYIAAITDRGAS 281 (406)
Q Consensus 233 i~iwd~~~-------~~~~~~~~~~~~---------------------~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 281 (406)
+.+.+.-. ++..+.-..+.+ . ....++|+|.-++ ++|++. ...
T Consensus 180 vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn--~lfi~~----pre 253 (1062)
T KOG1912|consen 180 VLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRN--ILFITF----PRE 253 (1062)
T ss_pred EEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhc--eEEEEe----ccc
Confidence 77665421 111111111000 0 0112467787765 555443 678
Q ss_pred EEEEeCCCceEEEEeeecCCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCceEE----------------EEeecccc
Q 015490 282 IVTWNTTTWKRIRTKQVVREPVSSFNVSADG--KLLAVGTASGDISIIDSSSLQVR----------------TAVKKAHL 343 (406)
Q Consensus 282 i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~--~~l~~~~~dg~i~i~d~~~~~~~----------------~~~~~~~~ 343 (406)
+.++|++-..++.......+.+.-+.+-|++ ..|++...||.+.+|-.+..... ..+....+
T Consensus 254 llv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~ 333 (1062)
T KOG1912|consen 254 LLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEE 333 (1062)
T ss_pred eEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechh
Confidence 9999999888888888777767777777765 47889999999999976542111 11110111
Q ss_pred cceEEEEEcCC-CCeEEEEECCCcEEEEEecCCc
Q 015490 344 GIVTALAFSYD-SRALVSASMDSSVRVTVIEDKK 376 (406)
Q Consensus 344 ~~v~~~~~sp~-~~~l~s~s~dg~i~iw~~~~~~ 376 (406)
..+......|. ...++.--.+|.+.+|.+.+++
T Consensus 334 ~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~r 367 (1062)
T KOG1912|consen 334 FRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGR 367 (1062)
T ss_pred cccceeecCCCChhhhhhhhhcchhHHHhhhcCC
Confidence 12223333443 3344444467889999998754
No 287
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.00 E-value=3.3e-07 Score=75.16 Aligned_cols=186 Identities=12% Similarity=0.054 Sum_probs=126.1
Q ss_pred eEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-eEee-
Q 015490 127 GIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLE-IILN- 204 (406)
Q Consensus 127 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~-~~~~- 204 (406)
.+++..|.++++.+++....+.... . ..-.+.++.+++|++++++.+....|..|.++... .+..
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~~h------------~-~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~ 197 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFAVH------------N-QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENI 197 (344)
T ss_pred eeeccCCcceeEEEEecCcccceee------------c-cccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeee
Confidence 4445558999998887653221110 0 11237889999999999999999999999986433 2222
Q ss_pred -eeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee----ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCC
Q 015490 205 -ESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT----PLAKENDELFASCRFSPLNNEDYVLYIAAITDRG 279 (406)
Q Consensus 205 -~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 279 (406)
.....+.-.+..|+.....+|++..||++.|||++...... ....++.+.++.+.|++.|.- =++.....-
T Consensus 198 ~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~l----DLLf~sEhf 273 (344)
T KOG4532|consen 198 YEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLL----DLLFISEHF 273 (344)
T ss_pred EecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcc----eEEEEecCc
Confidence 22223355789999999999999999999999998755433 234467778999999997753 233334667
Q ss_pred cEEEEEeCCCceEEEEeeecC--------CCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 015490 280 ASIVTWNTTTWKRIRTKQVVR--------EPVSSFNVSADGKLLAVGTASGDISIIDSS 330 (406)
Q Consensus 280 ~~i~~~d~~~~~~~~~~~~~~--------~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~ 330 (406)
+.+.+.|+++++....+.... ..|....|+.++..+.+.+++. +.=|++.
T Consensus 274 s~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni~ 331 (344)
T KOG4532|consen 274 SRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNIL 331 (344)
T ss_pred ceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccchh-hheeecc
Confidence 899999999987665554332 2366677777766666555432 3344443
No 288
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.00 E-value=4.1e-07 Score=77.93 Aligned_cols=208 Identities=16% Similarity=0.156 Sum_probs=143.3
Q ss_pred cEEEEEECC-CCCEEEEeeCCCe-EEEEeCCCcceEeeeeccCC--ceeEEEEccCCCEEEEEe-----CCCCEEEEEcC
Q 015490 169 QQLALTFDS-EGTIFAAGSENGN-LRVFKWPSLEIILNESEAHA--SVKDLSFSPDGKFLVSLG-----NRGPGRVWDLA 239 (406)
Q Consensus 169 ~v~~~~~s~-~g~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~s~s-----~d~~i~iwd~~ 239 (406)
....++.+| ++..++.+-.-|+ ..+||..+++....+....+ .--.-.||+||++|++.- ..|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 345688899 5577777777664 77899999998877655444 233578999999999874 35789999998
Q ss_pred -CCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcC----------------CCcEEEEEeCCCceEEEEeee----
Q 015490 240 -SSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITD----------------RGASIVTWNTTTWKRIRTKQV---- 298 (406)
Q Consensus 240 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~i~~~d~~~~~~~~~~~~---- 298 (406)
+.+.+..+..+.- ....+.+.|+++. ++++.++ .+..+.+.|..+++.+.+...
T Consensus 86 ~~~~ri~E~~s~GI-GPHel~l~pDG~t----LvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~ 160 (305)
T PF07433_consen 86 RGYRRIGEFPSHGI-GPHELLLMPDGET----LVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL 160 (305)
T ss_pred CCcEEEeEecCCCc-ChhhEEEcCCCCE----EEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc
Confidence 5566666664322 2446788999974 2334332 134577788888888777443
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCc-------EEEEECCCceEEEEee------cccccceEEEEEcCCCCeEEEEE-CC
Q 015490 299 VREPVSSFNVSADGKLLAVGTASGD-------ISIIDSSSLQVRTAVK------KAHLGIVTALAFSYDSRALVSAS-MD 364 (406)
Q Consensus 299 ~~~~i~~~~~sp~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~~------~~~~~~v~~~~~sp~~~~l~s~s-~d 364 (406)
|...|..++++++|..++..-..|. |-+++... .+..+. ..-.+.+-+|++++++.++++.| .-
T Consensus 161 ~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG 238 (305)
T PF07433_consen 161 HQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG 238 (305)
T ss_pred cccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC
Confidence 6678999999999976665544332 44444332 222221 12346789999999998775544 67
Q ss_pred CcEEEEEecCCcCCCCchH
Q 015490 365 SSVRVTVIEDKKKSGGLNL 383 (406)
Q Consensus 365 g~i~iw~~~~~~~~~~~~~ 383 (406)
+.+.+||..+++.++..++
T Consensus 239 g~~~~~d~~tg~~~~~~~l 257 (305)
T PF07433_consen 239 GRVAVWDAATGRLLGSVPL 257 (305)
T ss_pred CEEEEEECCCCCEeecccc
Confidence 8899999999988776553
No 289
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.99 E-value=1.1e-08 Score=85.38 Aligned_cols=253 Identities=15% Similarity=0.178 Sum_probs=154.8
Q ss_pred CCCceEEEEccCCCeEEEEe-cCCeEEEEEeccccccee---ecce-eccceeeecccccCcEEEEEECCCC--CEEEEe
Q 015490 113 SDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIR---RLGV-KISEKVLSQLENVGQQLALTFDSEG--TIFAAG 185 (406)
Q Consensus 113 ~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~~ 185 (406)
.+.|+++.|...|.+|++|. +|.+.+|.-....+-+.+ .+.. .+....+..+.-...|..+.|-.++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 46689999999999999885 454444433222211110 0000 0011122233334567888887655 456666
Q ss_pred eCCCeEEEEeCCCcc-------------------e------------------E-----eee-eccCCceeEEEEccCCC
Q 015490 186 SENGNLRVFKWPSLE-------------------I------------------I-----LNE-SEAHASVKDLSFSPDGK 222 (406)
Q Consensus 186 ~~dg~i~vwd~~~~~-------------------~------------------~-----~~~-~~~~~~i~~~~~s~~~~ 222 (406)
+.|.+|++|.+.... . + +.. ..|.-.|.++.++.|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 789999999873220 0 0 001 11222677889988888
Q ss_pred EEEEEeCCCCEEEEEcCCCee---eeecccCC----cceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceE---
Q 015490 223 FLVSLGNRGPGRVWDLASSAV---ATPLAKEN----DELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR--- 292 (406)
Q Consensus 223 ~l~s~s~d~~i~iwd~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~--- 292 (406)
.++++. |-.|.+|++.-... +..++.+. ...+++..|+|.... +....+..|.|++-|++....
T Consensus 186 t~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn-----~fmYSsSkG~Ikl~DlRq~alcdn 259 (460)
T COG5170 186 TLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCN-----VFMYSSSKGEIKLNDLRQSALCDN 259 (460)
T ss_pred eeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcc-----eEEEecCCCcEEehhhhhhhhccC
Confidence 777654 66899998764322 12222221 235778889998765 344456789999999984221
Q ss_pred ---EEEe----------eecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc-eEEEEeeccc------------ccce
Q 015490 293 ---IRTK----------QVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSL-QVRTAVKKAH------------LGIV 346 (406)
Q Consensus 293 ---~~~~----------~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~------------~~~v 346 (406)
+... ..-...|..+.|+++|+++++-+ --+|+|||.+.. .++.++. -| ...|
T Consensus 260 ~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~-~h~~l~~~l~d~YEnDai 337 (460)
T COG5170 260 SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIP-MHCDLMDELNDVYENDAI 337 (460)
T ss_pred chhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeec-hHHHHHHHHHhhhhccce
Confidence 1111 11125688999999999998754 457999998753 4555553 23 2233
Q ss_pred ---EEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490 347 ---TALAFSYDSRALVSASMDSSVRVTVIE 373 (406)
Q Consensus 347 ---~~~~~sp~~~~l~s~s~dg~i~iw~~~ 373 (406)
..+.||.|.+.+++|+..+..-++-+.
T Consensus 338 fdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 338 FDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred eeeEEEEecCCcccccccccccceeeeccc
Confidence 367899999999999988887777643
No 290
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=1.7e-07 Score=87.52 Aligned_cols=237 Identities=13% Similarity=0.174 Sum_probs=161.5
Q ss_pred ceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCC------------CEE
Q 015490 116 PYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEG------------TIF 182 (406)
Q Consensus 116 v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g------------~~l 182 (406)
-.++.|+|.| .++.|+...+.+ +|..+. +.++.+++| ..|+.+.|.|.. -+|
T Consensus 18 ~~A~Dw~~~G-LiAygshslV~V--VDs~s~------------q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lli 82 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSHSLVSV--VDSRSL------------QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLI 82 (1062)
T ss_pred ccccccCccc-eEEEecCceEEE--Eehhhh------------hhhhccccCccceeEEEeccCCCchhccCccccceeE
Confidence 5688999976 566666655444 665533 344444444 789999998732 257
Q ss_pred EEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEcc---CC-CEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEE
Q 015490 183 AAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSP---DG-KFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASC 258 (406)
Q Consensus 183 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~---~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 258 (406)
|++...|.|.+||+..+..+..+..+.+++.+++|-+ +. ..|+......++.+|+..+|+..-..... .....++
T Consensus 83 AsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys-~~iLs~f 161 (1062)
T KOG1912|consen 83 ASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS-HEILSCF 161 (1062)
T ss_pred EeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC-Ccceeee
Confidence 7888899999999998888878877778999999965 34 36677777889999999999887766543 3356678
Q ss_pred EEEcCCCCceEEEEEEEcCCCcEEEEEeCC-C------ceEEEEeeecCC-------------------------CeEEE
Q 015490 259 RFSPLNNEDYVLYIAAITDRGASIVTWNTT-T------WKRIRTKQVVRE-------------------------PVSSF 306 (406)
Q Consensus 259 ~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~-~------~~~~~~~~~~~~-------------------------~i~~~ 306 (406)
.+.|.... .+ ... +..|.+.+-+.- . ++.......|.. ....+
T Consensus 162 ~~DPfd~r--h~--~~l-~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~f 236 (1062)
T KOG1912|consen 162 RVDPFDSR--HF--CVL-GSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQF 236 (1062)
T ss_pred eeCCCCcc--eE--EEE-ccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhh
Confidence 88887664 12 222 334555554432 1 122221111110 11245
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCC--CeEEEEECCCcEEEEEecC
Q 015490 307 NVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDS--RALVSASMDSSVRVTVIED 374 (406)
Q Consensus 307 ~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~s~s~dg~i~iw~~~~ 374 (406)
+|+|.-+.++.......+.++|++-...+.... -..+.+.-+.|-|++ ..|++...||.+.+|--+.
T Consensus 237 af~p~~rn~lfi~~prellv~dle~~~~l~vvp-ier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 237 AFSPHWRNILFITFPRELLVFDLEYECCLAVVP-IERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hcChhhhceEEEEeccceEEEcchhhceeEEEE-eccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 678866656666667789999999888888775 456666777888875 4688899999999998765
No 291
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=2.9e-09 Score=95.36 Aligned_cols=248 Identities=10% Similarity=0.076 Sum_probs=162.2
Q ss_pred cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCE
Q 015490 104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTI 181 (406)
Q Consensus 104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~ 181 (406)
-.+..+.||+..|..++--.+.+.+++++ |.++++|.+.....+.. +..+..++. |..+|..+.|-.+-++
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~-------tsaCQfTY~aHkk~i~~igfL~~lr~ 798 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIG-------TSACQFTYQAHKKPIHDIGFLADLRS 798 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccc-------cceeeeEhhhccCcccceeeeeccce
Confidence 45668899999999988766666666665 99999998876533211 122333333 4588999999999888
Q ss_pred EEEeeCCCeEEEEeCCCcceEeeeec--cCCceeEEEEcc--CCCEEEE-EeCCCCEEEEEcCCCeeeeeccc----CCc
Q 015490 182 FAAGSENGNLRVFKWPSLEIILNESE--AHASVKDLSFSP--DGKFLVS-LGNRGPGRVWDLASSAVATPLAK----END 252 (406)
Q Consensus 182 l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~i~~~~~s~--~~~~l~s-~s~d~~i~iwd~~~~~~~~~~~~----~~~ 252 (406)
++++ ||-|++||.--++.+..... .++.+..+..-+ +...+.. ++...+++++|.+..+....++. ...
T Consensus 799 i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pn 876 (1034)
T KOG4190|consen 799 IASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPN 876 (1034)
T ss_pred eeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCc
Confidence 8775 78999999876665543322 122333344333 3333433 46788999999998876655432 233
Q ss_pred ceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEE-EECCC
Q 015490 253 ELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISI-IDSSS 331 (406)
Q Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i-~d~~~ 331 (406)
..+++++..+.|+. ++.+-.+|.|.+.|.++++.+...+.-......++ .|..+.++....|.++.+ |-.-.
T Consensus 877 a~~R~iaVa~~GN~------lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhald 949 (1034)
T KOG4190|consen 877 ALTRAIAVADKGNK------LAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALD 949 (1034)
T ss_pred hheeEEEeccCcch------hhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcC
Confidence 45789999999985 55666789999999999998877765544444444 355567777777888888 87776
Q ss_pred ceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEE
Q 015490 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVT 370 (406)
Q Consensus 332 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw 370 (406)
+....+.+ ....+..-+ ..-|..|+++.....+.+|
T Consensus 950 gimh~q~k-pppepahfl--qsvgpSLV~a~~Gn~lgVY 985 (1034)
T KOG4190|consen 950 GIMHLQDK-PPPEPAHFL--QSVGPSLVTAQNGNILGVY 985 (1034)
T ss_pred CeeeeccC-CCCcchhhh--hccCceeEEeccCcEEEEE
Confidence 66555443 222221111 1124556666655556666
No 292
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.95 E-value=1.6e-06 Score=74.69 Aligned_cols=199 Identities=18% Similarity=0.132 Sum_probs=130.3
Q ss_pred EEEECC-CCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEc-cCCCEEEEEeCCCCEEEEEcCCCeeeeeccc
Q 015490 172 ALTFDS-EGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFS-PDGKFLVSLGNRGPGRVWDLASSAVATPLAK 249 (406)
Q Consensus 172 ~~~~s~-~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 249 (406)
++.|.+ ++.++++-...+.|+.|+..++.... +.... ...+++. +++ .++.+... .+.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEEeec
Confidence 568887 77777777778999999988876543 22222 6777887 665 45555554 566669988865443332
Q ss_pred ---C-CcceEEEEEEEcCCCCceEEEEEEEcCCC------cEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEE-
Q 015490 250 ---E-NDELFASCRFSPLNNEDYVLYIAAITDRG------ASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVG- 318 (406)
Q Consensus 250 ---~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~- 318 (406)
. .......+++.++|+ +|+....... +.|+.++.. ++....... -.....++|+|+++.|+++
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~----ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-~~~pNGi~~s~dg~~lyv~d 152 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGN----LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-LGFPNGIAFSPDGKTLYVAD 152 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-----EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-ESSEEEEEEETTSSEEEEEE
T ss_pred cCCCcccCCCceEEEcCCCC----EEEEecCCCccccccccceEEECCC-CeEEEEecC-cccccceEECCcchheeecc
Confidence 1 445678899999987 3444443322 778889888 554433333 3456899999999987654
Q ss_pred eCCCcEEEEECCCc-e-E--EEEeecccc--cceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCch
Q 015490 319 TASGDISIIDSSSL-Q-V--RTAVKKAHL--GIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLN 382 (406)
Q Consensus 319 ~~dg~i~i~d~~~~-~-~--~~~~~~~~~--~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~ 382 (406)
+..+.|..+++... . . ...+..... +....+++..+|++.++....+.|.+++.+ ++.+..++
T Consensus 153 s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~ 221 (246)
T PF08450_consen 153 SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIE 221 (246)
T ss_dssp TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE
T ss_pred cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEc
Confidence 55788999998532 1 1 122211122 347799999999988888888999999977 76655443
No 293
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.95 E-value=2.2e-06 Score=71.35 Aligned_cols=203 Identities=15% Similarity=0.114 Sum_probs=112.3
Q ss_pred CceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCC------CEEEEeeC
Q 015490 115 LPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEG------TIFAAGSE 187 (406)
Q Consensus 115 ~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g------~~l~~~~~ 187 (406)
.=+.++||||+..|+.+. .+++++|++.. ..+..+.. ... ....-...|..+.|.+-. ..|++-..
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g---~~lf~I~p--~~~--~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y 117 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMG---SELFVIPP--AMS--FPGDLSDAIAGLIFLEYKKSAQWSYELLVINY 117 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEeccc---ceeEEcCc--ccc--cCCccccceeeeEeeccccccccceeEEEEec
Confidence 347899999999999885 77888876543 22222211 111 111123566777775422 24556677
Q ss_pred CCeEEEEeCCCc-----ceEe--eeecc-CCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEE
Q 015490 188 NGNLRVFKWPSL-----EIIL--NESEA-HASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCR 259 (406)
Q Consensus 188 dg~i~vwd~~~~-----~~~~--~~~~~-~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 259 (406)
+|.++-|-+..+ +... .+..+ ...|.++.++|..++|++|+.... +++... .....+++=+
T Consensus 118 ~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~s~-----a~~~GLtaWR 186 (282)
T PF15492_consen 118 RGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGMSK-----ASSCGLTAWR 186 (282)
T ss_pred cceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcccc-----ccccCceEEE
Confidence 888888776322 2222 22233 238999999999998888875322 000000 0000111111
Q ss_pred EEcCCCCceEEEEEEEcCCCc------EEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCce
Q 015490 260 FSPLNNEDYVLYIAAITDRGA------SIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQ 333 (406)
Q Consensus 260 ~~~~~~~~~~l~~~~~~~~~~------~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~ 333 (406)
...+..+ +..+...++. +..+|.+-+.+...........|..|..||||+.||+...+|.|.+|++.+.+
T Consensus 187 iL~~~Py----yk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 187 ILSDSPY----YKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred EcCCCCc----EEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 1111111 1111111111 12233333322222222235679999999999999999999999999999888
Q ss_pred EEEEee
Q 015490 334 VRTAVK 339 (406)
Q Consensus 334 ~~~~~~ 339 (406)
....+.
T Consensus 263 ~~~~W~ 268 (282)
T PF15492_consen 263 LQRSWK 268 (282)
T ss_pred hhcccc
Confidence 777764
No 294
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.93 E-value=1.4e-08 Score=82.64 Aligned_cols=149 Identities=13% Similarity=0.109 Sum_probs=94.4
Q ss_pred CCCEEEEEeCCCCEEEEEcCCCee-eeecccCCcceEEEEEEEcCCCCceEEEEEEE----cCCCcEEEEEeCCCceEEE
Q 015490 220 DGKFLVSLGNRGPGRVWDLASSAV-ATPLAKENDELFASCRFSPLNNEDYVLYIAAI----TDRGASIVTWNTTTWKRIR 294 (406)
Q Consensus 220 ~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~i~~~d~~~~~~~~ 294 (406)
.++.++++..||.+.+++.+.-.. ..++...+.... +......++ ++.+. -..-+..+.|+++..+.+.
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~a-s~~~~~~~~-----~i~s~~~g~~n~~d~~~a~~~~p~~t~~ 173 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSA-SRKICRHGN-----SILSGGCGNWNAQDNFYANTLDPIKTLI 173 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhccccccccc-ccceeeccc-----EEecCCcceEeeccceeeeccccccccc
Confidence 356799999999999998765211 111111111111 111222222 11110 0112345566665433222
Q ss_pred EeeecCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcC-CCCeEEEEECCCcEEEEEe
Q 015490 295 TKQVVREPVSSFNVSAD-GKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSY-DSRALVSASMDSSVRVTVI 372 (406)
Q Consensus 295 ~~~~~~~~i~~~~~sp~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~s~dg~i~iw~~ 372 (406)
.-......+.+++-+|. .+.+++|+.||.+.+||.++......+...|..+++.+-|+| ++..|++++.||.+.-||-
T Consensus 174 ~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wda 253 (319)
T KOG4714|consen 174 PSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDA 253 (319)
T ss_pred ccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcC
Confidence 22222234889999995 456778888999999999988766666568999999999999 5788999999999999998
Q ss_pred cC
Q 015490 373 ED 374 (406)
Q Consensus 373 ~~ 374 (406)
.+
T Consensus 254 s~ 255 (319)
T KOG4714|consen 254 ST 255 (319)
T ss_pred CC
Confidence 73
No 295
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.92 E-value=5.1e-08 Score=81.48 Aligned_cols=210 Identities=14% Similarity=0.210 Sum_probs=135.8
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-e----EeeeeccC------------CceeEEEEccCCC--EEEE
Q 015490 166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLE-I----ILNESEAH------------ASVKDLSFSPDGK--FLVS 226 (406)
Q Consensus 166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~-~----~~~~~~~~------------~~i~~~~~s~~~~--~l~s 226 (406)
....|+++.|...|.++++|...|.|.+|.-+... + ...+..|. ..|..+.|..++. .++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34678999999999999999999999999754322 1 11122222 2578889876543 5777
Q ss_pred EeCCCCEEEEEcCCCe-------------------ee-----------------------eecccCCcceEEEEEEEcCC
Q 015490 227 LGNRGPGRVWDLASSA-------------------VA-----------------------TPLAKENDELFASCRFSPLN 264 (406)
Q Consensus 227 ~s~d~~i~iwd~~~~~-------------------~~-----------------------~~~~~~~~~~~~~~~~~~~~ 264 (406)
.+.|.+|++|.+.... ++ +.....|...+.+++|+.+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 8889999999874321 00 00111233446677777777
Q ss_pred CCceEEEEEEEcCCCcEEEEEeCCCceE---EEEeeecC-----CCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCceE-
Q 015490 265 NEDYVLYIAAITDRGASIVTWNTTTWKR---IRTKQVVR-----EPVSSFNVSADG-KLLAVGTASGDISIIDSSSLQV- 334 (406)
Q Consensus 265 ~~~~~l~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~-----~~i~~~~~sp~~-~~l~~~~~dg~i~i~d~~~~~~- 334 (406)
.. .....+-.|.+|++.-... +..++.|. .-|++..|+|.. +.+...+..|.|++-|++....
T Consensus 185 et-------~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc 257 (460)
T COG5170 185 ET-------LLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC 257 (460)
T ss_pred he-------eeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc
Confidence 63 2234678899999864332 22233332 457889999953 4566667799999999984221
Q ss_pred -----EEEe---------ecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCc-CCCCchH
Q 015490 335 -----RTAV---------KKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKK-KSGGLNL 383 (406)
Q Consensus 335 -----~~~~---------~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~-~~~~~~~ 383 (406)
+... ..+-...|..+.|+++|+++++-+. -+|+|||++..+ ++.++|.
T Consensus 258 dn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~ 320 (460)
T COG5170 258 DNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPM 320 (460)
T ss_pred cCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeech
Confidence 1110 0122346789999999999987654 579999998654 4555554
No 296
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=1.1e-07 Score=85.37 Aligned_cols=179 Identities=19% Similarity=0.255 Sum_probs=132.9
Q ss_pred EEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeC-----------CCCEEEEEcC
Q 015490 171 LALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGN-----------RGPGRVWDLA 239 (406)
Q Consensus 171 ~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~-----------d~~i~iwd~~ 239 (406)
+-+.|||.|.||++-...| |.+|-=.+...++.+ .|..|.-+.|||..++|++-+. ...++|||++
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF--~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF--YHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhc--cCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 5689999999999977665 789986666666555 3446899999999999998653 2579999999
Q ss_pred CCeeeeecccC--CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEE
Q 015490 240 SSAVATPLAKE--NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAV 317 (406)
Q Consensus 240 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~ 317 (406)
+|...+.+... ......-..||.++++ ++... ...|.+|+..+..++..-...-..|....|+|.++.||.
T Consensus 291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy-----~Arm~--~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKY-----FARMT--GNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred ccchhcceeccCCCccccceEEeccCCce-----eEEec--cceEEEEecCceeeecccccCCccccCcccCCCcceEEE
Confidence 99988877652 2223445789999985 33322 367999998876655444444467899999999999987
Q ss_pred EeC-----CCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEE
Q 015490 318 GTA-----SGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVS 360 (406)
Q Consensus 318 ~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 360 (406)
-+. -..+.+..+.+++.+++.. -|.-.=..+.|-.+|.+|+.
T Consensus 364 wtpe~~~~parvtL~evPs~~~iRt~n-lfnVsDckLhWQk~gdyLcv 410 (698)
T KOG2314|consen 364 WTPETNNIPARVTLMEVPSKREIRTKN-LFNVSDCKLHWQKSGDYLCV 410 (698)
T ss_pred EcccccCCcceEEEEecCccceeeecc-ceeeeccEEEeccCCcEEEE
Confidence 554 2458888888888887764 45444457788888998874
No 297
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.87 E-value=4.2e-06 Score=77.11 Aligned_cols=173 Identities=16% Similarity=0.170 Sum_probs=110.9
Q ss_pred CEEEEeeCCCeEEEEeCCCcceEeeeeccCC----c------e-eEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecc
Q 015490 180 TIFAAGSENGNLRVFKWPSLEIILNESEAHA----S------V-KDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLA 248 (406)
Q Consensus 180 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----~------i-~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 248 (406)
..++.+..+|.+..+|.++|+.+........ . + ....+ .+..+++++.++.++.||.++++..-...
T Consensus 191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~ 268 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRD 268 (377)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeec
Confidence 3677788889999999999886654321100 0 0 11112 24578888889999999999998765544
Q ss_pred cCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeee-cCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 015490 249 KENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV-VREPVSSFNVSADGKLLAVGTASGDISII 327 (406)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg~i~i~ 327 (406)
... ..... ..+.. +| ..+.++.++.+|..+++.+..... ......+... .+..|++++.+|.|+++
T Consensus 269 ~~~---~~~p~--~~~~~---vy---v~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~ 335 (377)
T TIGR03300 269 ASS---YQGPA--VDDNR---LY---VTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWL 335 (377)
T ss_pred cCC---ccCce--EeCCE---EE---EECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEE
Confidence 211 11122 22332 22 235789999999999987765532 1122222222 36789999999999999
Q ss_pred ECCCceEEEEeecccccce-EEEEEcCCCCeEEEEECCCcEEEE
Q 015490 328 DSSSLQVRTAVKKAHLGIV-TALAFSYDSRALVSASMDSSVRVT 370 (406)
Q Consensus 328 d~~~~~~~~~~~~~~~~~v-~~~~~sp~~~~l~s~s~dg~i~iw 370 (406)
|..+++.+..+. .+...+ .+..+. + ..|+.++.||.|+.+
T Consensus 336 d~~tG~~~~~~~-~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 336 SREDGSFVARLK-TDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred ECCCCCEEEEEE-cCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 999999998876 344332 233333 3 358888999998765
No 298
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=5.5e-08 Score=85.17 Aligned_cols=250 Identities=12% Similarity=0.119 Sum_probs=166.7
Q ss_pred cCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCEEEEeeC-
Q 015490 111 TDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGSE- 187 (406)
Q Consensus 111 ~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~- 187 (406)
-|.+.|+.+...- .+++..++ |+.++.|.-....+ .+.+..+..+ ..+.+++.+-+|.++++++.
T Consensus 7 mhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isG-----------vEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~ 74 (558)
T KOG0882|consen 7 MHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISG-----------VEFVKHFRAHLGVILSLAVSYDGWLFRSVEDP 74 (558)
T ss_pred cccceeeeEeeeh-hheEEeeecchhhhhcCCCCccc-----------eeehhhhHHHHHHHHhhhccccceeEeeccCc
Confidence 3667777665543 46677776 99988875432111 1222333333 67888999999999999877
Q ss_pred CCeEEEEeCCCcceEeeeeccCCceeEEEE--ccC-CC-EEEEE-eCCCCEEEEEcCCCe-eeeecccCCcceEEEEEEE
Q 015490 188 NGNLRVFKWPSLEIILNESEAHASVKDLSF--SPD-GK-FLVSL-GNRGPGRVWDLASSA-VATPLAKENDELFASCRFS 261 (406)
Q Consensus 188 dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~--s~~-~~-~l~s~-s~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~ 261 (406)
|..++++|+++-..+.-+....- ...+.| ++. -. .|++. -.++.+.++|-.... +...+...+..++..+.+.
T Consensus 75 Dhs~KvfDvEn~DminmiKL~~l-Pg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~ 153 (558)
T KOG0882|consen 75 DHSVKVFDVENFDMINMIKLVDL-PGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYN 153 (558)
T ss_pred ccceeEEEeeccchhhhcccccC-CCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEee
Confidence 99999999977654422221111 112223 222 11 33333 357899999987654 3444555667789999999
Q ss_pred cCCCCceEEEEEEEcCCCcEEEEEeCCC-ce-----E---------EEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 015490 262 PLNNEDYVLYIAAITDRGASIVTWNTTT-WK-----R---------IRTKQVVREPVSSFNVSADGKLLAVGTASGDISI 326 (406)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~i~~~d~~~-~~-----~---------~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i 326 (406)
+.+. ...+.+..|.|..|.... .+ . +..+........++.|+|+|..+.+-+.|..|++
T Consensus 154 qa~D------s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~ 227 (558)
T KOG0882|consen 154 QAGD------SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRG 227 (558)
T ss_pred cccc------ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEE
Confidence 9887 456777789999998772 11 1 1111222356789999999999999999999999
Q ss_pred EECCCceEEEEee-------------------------------cccc-cceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490 327 IDSSSLQVRTAVK-------------------------------KAHL-GIVTALAFSYDSRALVSASMDSSVRVTVIED 374 (406)
Q Consensus 327 ~d~~~~~~~~~~~-------------------------------~~~~-~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~ 374 (406)
++.++++.++.+. ..|. ..-+.+.|...|++|+.++.=| |++.++.+
T Consensus 228 F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~t 306 (558)
T KOG0882|consen 228 FVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDT 306 (558)
T ss_pred EEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeec
Confidence 9999887665543 0111 1234678888899999988766 99999999
Q ss_pred CcCCCC
Q 015490 375 KKKSGG 380 (406)
Q Consensus 375 ~~~~~~ 380 (406)
+..++.
T Consensus 307 n~v~ri 312 (558)
T KOG0882|consen 307 NTVVRI 312 (558)
T ss_pred CeEEEE
Confidence 876543
No 299
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.87 E-value=2.4e-06 Score=73.28 Aligned_cols=186 Identities=16% Similarity=0.120 Sum_probs=119.1
Q ss_pred CCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeec-ccCC--cce
Q 015490 178 EGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPL-AKEN--DEL 254 (406)
Q Consensus 178 ~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~~~--~~~ 254 (406)
++..+++++.++.+..||..+|+.+........ +.... ..++..+++++.++.++.+|..+|+..... .... ...
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV 112 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-GGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-cccee-eecccccccccceeeeEecccCCcceeeeecccccccccc
Confidence 556677778999999999999998877665332 21111 223556777778889999999999987763 2211 111
Q ss_pred EEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCC----------e-EEEEEcCCCCEEEEEeCCCc
Q 015490 255 FASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREP----------V-SSFNVSADGKLLAVGTASGD 323 (406)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~----------i-~~~~~sp~~~~l~~~~~dg~ 323 (406)
.........+.. +..+..++.|..+|+++++.+......... + ..+.+. ++ .++.++.++.
T Consensus 113 ~~~~~~~~~~~~------~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~ 184 (238)
T PF13360_consen 113 RSSSSPAVDGDR------LYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGR 184 (238)
T ss_dssp B--SEEEEETTE------EEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSS
T ss_pred ccccCceEecCE------EEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCe
Confidence 122222323442 222334899999999999998887664322 1 222333 44 7777777886
Q ss_pred EEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490 324 ISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK 377 (406)
Q Consensus 324 i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~ 377 (406)
+..+|+.+++.+... . ...+..+ ...++..|+.++.++.|..||+++++.
T Consensus 185 ~~~~d~~tg~~~w~~--~-~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 185 VVAVDLATGEKLWSK--P-ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp EEEEETTTTEEEEEE--C-SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred EEEEECCCCCEEEEe--c-CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 444499999866432 2 2222221 345677888888999999999999986
No 300
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.86 E-value=6.2e-08 Score=91.23 Aligned_cols=112 Identities=22% Similarity=0.277 Sum_probs=86.2
Q ss_pred CCCceEEEEccCCCeEEEEe-----cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC
Q 015490 113 SDLPYRMAIHPHGDGIICAL-----QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE 187 (406)
Q Consensus 113 ~~~v~~~~~sp~~~~l~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 187 (406)
.+..+-..|+|...++++++ .|++.||. + +++. .+...-+-.+++++|+|..-.|+.|-.
T Consensus 15 davsti~SWHPsePlfAVA~fS~er~GSVtIfa-d--tGEP------------qr~Vt~P~hatSLCWHpe~~vLa~gwe 79 (1416)
T KOG3617|consen 15 DAVSTISSWHPSEPLFAVASFSPERGGSVTIFA-D--TGEP------------QRDVTYPVHATSLCWHPEEFVLAQGWE 79 (1416)
T ss_pred cccccccccCCCCceeEEEEecCCCCceEEEEe-c--CCCC------------CcccccceehhhhccChHHHHHhhccc
Confidence 34445678999999988775 56666653 2 2221 111222234567999999989999999
Q ss_pred CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcC
Q 015490 188 NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLA 239 (406)
Q Consensus 188 dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~ 239 (406)
-|.+.+|...+.+.......|..+|..+.||++|..++++..-|.+.+|...
T Consensus 80 ~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 80 MGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 9999999988877776667777899999999999999999999999999875
No 301
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.84 E-value=1.4e-08 Score=94.06 Aligned_cols=204 Identities=15% Similarity=0.198 Sum_probs=143.4
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCC--ceeEEEEccCCC--EEEEEeCCCCEEEEEcCC-
Q 015490 166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHA--SVKDLSFSPDGK--FLVSLGNRGPGRVWDLAS- 240 (406)
Q Consensus 166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~i~~~~~s~~~~--~l~s~s~d~~i~iwd~~~- 240 (406)
..+.+..+..+|.|+-+|.++.-| +.+.|+...-.......|-. .|-++.|+|... +-++......-.+|++..
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 456778899999999999988876 55667754332223333332 678889987543 333333444566888753
Q ss_pred -CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce-EEEEeeecCCCeEEEEEcCCCCEEEEE
Q 015490 241 -SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK-RIRTKQVVREPVSSFNVSADGKLLAVG 318 (406)
Q Consensus 241 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~ 318 (406)
.+.+.-+...+...++.+.|+|..+. ++++++-|..+..||+++.. ++..+..-......++|+-....+.+.
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pd-----Vlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas 176 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPD-----VLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS 176 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCc-----ceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh
Confidence 33344444456677899999999987 77888999999999999864 344444444556789998754445555
Q ss_pred eCCCcEEEEECCCce-EEEEeecccccceEEEEEcCC-CCeEEEEECCCcEEEEEecCCc
Q 015490 319 TASGDISIIDSSSLQ-VRTAVKKAHLGIVTALAFSYD-SRALVSASMDSSVRVTVIEDKK 376 (406)
Q Consensus 319 ~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~sp~-~~~l~s~s~dg~i~iw~~~~~~ 376 (406)
+....|++||++.+. ++..++ +|...|+.+.|..- -..+.+++.|++|++||.+...
T Consensus 177 shg~~i~vwd~r~gs~pl~s~K-~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 177 SHGNDIFVWDLRKGSTPLCSLK-GHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred ccCCceEEEeccCCCcceEEec-ccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence 667789999998765 455554 79889999988753 3457889999999999987543
No 302
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.83 E-value=1.7e-07 Score=76.40 Aligned_cols=170 Identities=16% Similarity=0.235 Sum_probs=102.2
Q ss_pred ccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCE
Q 015490 103 DQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTI 181 (406)
Q Consensus 103 ~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 181 (406)
..+...+..|+++-.+-+.+-.+..+++++ ++.+.++..+. .....+++.. .+..-.+.+....++.
T Consensus 79 i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~-~~~~~~~i~~-----------~~~~~as~~~~~~~~~ 146 (319)
T KOG4714|consen 79 IDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDK-DLALMSRIPS-----------IHSGSASRKICRHGNS 146 (319)
T ss_pred cCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechH-HHhhhhhccc-----------ccccccccceeecccE
Confidence 345566666666655555555666777776 77777765543 1111111110 0011111222223344
Q ss_pred EEEee-----CCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCC-EEEEEeCCCCEEEEEcCCCeeeeecccCCcceE
Q 015490 182 FAAGS-----ENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGK-FLVSLGNRGPGRVWDLASSAVATPLAKENDELF 255 (406)
Q Consensus 182 l~~~~-----~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~ 255 (406)
+.++. .-+..+.|+++..+....-......|.+++-+|..+ .+++|+.||.+-+||.+.......+...+...+
T Consensus 147 i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i 226 (319)
T KOG4714|consen 147 ILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEI 226 (319)
T ss_pred EecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhh
Confidence 43331 223566677655443322222333689999998654 667778899999999998866655555667778
Q ss_pred EEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC
Q 015490 256 ASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT 289 (406)
Q Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~ 289 (406)
..+.|+|.... -+.++++||.+.-||..+
T Consensus 227 ~eV~FHpk~p~-----~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 227 WEVHFHPKNPE-----HLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hheeccCCCch-----heeEecCCCcEEEEcCCC
Confidence 89999998775 345567899999999876
No 303
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.82 E-value=8.3e-07 Score=72.89 Aligned_cols=190 Identities=15% Similarity=0.101 Sum_probs=124.4
Q ss_pred CCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEcc---C-CCEEEEEeCCCCEEEEEcCCCeeeeecccCCcce
Q 015490 179 GTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSP---D-GKFLVSLGNRGPGRVWDLASSAVATPLAKENDEL 254 (406)
Q Consensus 179 g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~---~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~ 254 (406)
-.+||.|+..|...+|...+.+....+...+ +.++.... + ...+..++.|.++++.++..+.....+-... -.
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~s--nn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~-~~ 160 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVS--NNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN-LT 160 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeeccc--ccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc-cc
Confidence 3589999999999999988766544333222 22222211 1 2246678888899988886543322221111 23
Q ss_pred EEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce--EEEEe-eecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 015490 255 FASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK--RIRTK-QVVREPVSSFNVSADGKLLAVGTASGDISIIDSSS 331 (406)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~--~~~~~-~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~ 331 (406)
..+++++++++ +.++.++...|..|.+.... .+... ......-.+..|+.....+|++..||++.|||++.
T Consensus 161 ~ns~~~snd~~------~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~ 234 (344)
T KOG4532|consen 161 QNSLHYSNDPS------WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRN 234 (344)
T ss_pred eeeeEEcCCCc------eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecc
Confidence 67899999998 34555667788888775432 23312 22233446889999999999999999999999987
Q ss_pred ceEEEEe----ecccccceEEEEEcCCCC--eEEEEECCCcEEEEEecCCcC
Q 015490 332 LQVRTAV----KKAHLGIVTALAFSYDSR--ALVSASMDSSVRVTVIEDKKK 377 (406)
Q Consensus 332 ~~~~~~~----~~~~~~~v~~~~~sp~~~--~l~s~s~dg~i~iw~~~~~~~ 377 (406)
....... ...|.+.++.+.|++-|. +|+..-.=+.+.+-|+++.+.
T Consensus 235 ~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 235 MATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred cccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence 5433222 235899999999998653 333333446789999988764
No 304
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=7.9e-08 Score=84.23 Aligned_cols=212 Identities=16% Similarity=0.091 Sum_probs=149.5
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC--c-ceEeeeeccCCceeEEEEccCCCEEEEEeC-CCCEEEEEcCCC
Q 015490 166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPS--L-EIILNESEAHASVKDLSFSPDGKFLVSLGN-RGPGRVWDLASS 241 (406)
Q Consensus 166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~--~-~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~-d~~i~iwd~~~~ 241 (406)
|.+.|+.+..+ -.+++.+++.||.++.|.-.. + +.+..+..|...|.+++.+-++..+.+.+. |..++++|+.+-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 44556555443 457899999999999998533 1 233344455568889999999999999887 999999999876
Q ss_pred eeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce--EEEEeeecCCCeEEEEEcCCCCEEEEEe
Q 015490 242 AVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK--RIRTKQVVREPVSSFNVSADGKLLAVGT 319 (406)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 319 (406)
..+..+....-....+...++... ...++++.-.++.+.++|-...- ....-..|..+|..+.+.+-+..+++..
T Consensus 87 DminmiKL~~lPg~a~wv~skGd~---~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD 163 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWVTSKGDK---ISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID 163 (558)
T ss_pred chhhhcccccCCCceEEecCCCCe---eeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence 655433322211121222333322 23456667788999999976543 3344456789999999999999999998
Q ss_pred CCCcEEEEECCC------ceEEEEee--------cccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490 320 ASGDISIIDSSS------LQVRTAVK--------KAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL 381 (406)
Q Consensus 320 ~dg~i~i~d~~~------~~~~~~~~--------~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~ 381 (406)
..|.|.-|.... .+....++ ........++.|+|+|..+.+-+.|.+|+++++.+++.+..+
T Consensus 164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 899999999872 11111111 012345789999999999999999999999999999876544
No 305
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.77 E-value=3.4e-08 Score=57.96 Aligned_cols=39 Identities=26% Similarity=0.309 Sum_probs=35.7
Q ss_pred ceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEE
Q 015490 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTV 371 (406)
Q Consensus 332 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~ 371 (406)
++++..+. +|...|++++|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~-~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFR-GHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEE-SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEc-CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 35677775 8999999999999999999999999999997
No 306
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=98.73 E-value=8.6e-05 Score=66.47 Aligned_cols=291 Identities=14% Similarity=0.128 Sum_probs=132.2
Q ss_pred CCCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEe-cCC-CCceEEEEc-----------cCCCeEEEEe
Q 015490 66 IRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELR-TDS-DLPYRMAIH-----------PHGDGIICAL 132 (406)
Q Consensus 66 ~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~-~~v~~~~~s-----------p~~~~l~~~~ 132 (406)
.+.++++++..-........++.+....+++++... .+.+.++. .+. +.....-|+ .+.++|++.+
T Consensus 16 ~p~E~l~YV~~~~~~~~~~~pD~LatVDvdP~S~tY-gqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~Pg 94 (461)
T PF05694_consen 16 GPREKLLYVWCLYPGTGIDKPDYLATVDVDPDSPTY-GQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPG 94 (461)
T ss_dssp S---SEEEEEEE-TTTT-----EEEEEE--TTSTTT-TSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEB
T ss_pred CCCceEEEEEeecCCCCCCCCCeEEEEECCCCCCCc-ccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeee
Confidence 446666666543322333456778888888877554 23444442 333 466666665 2567888888
Q ss_pred cCCeEEEEEecccccceeec-ceeccceeeecccccCcEEEEEECCCCCEEEEee------CCCeEEEEeCCCcceEeee
Q 015490 133 QNSCRLFEWDEVENTEIRRL-GVKISEKVLSQLENVGQQLALTFDSEGTIFAAGS------ENGNLRVFKWPSLEIILNE 205 (406)
Q Consensus 133 ~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~------~dg~i~vwd~~~~~~~~~~ 205 (406)
=.+-+||.+|..+.....++ .+- ..+.+..-.+-.....+-.-|+|+.++++- .-|-+.++|-++.+.....
T Consensus 95 L~SsrIyviD~~~dPr~P~l~KvI-e~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~W 173 (461)
T PF05694_consen 95 LRSSRIYVIDTKTDPRKPRLHKVI-EPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRW 173 (461)
T ss_dssp TTT--EEEEE--S-TTS-EEEEEE--HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE-
T ss_pred eccCcEEEEECCCCCCCCceEeee-CHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcccccccee
Confidence 55558888887643221111 110 110011001112233445567898888752 2356888898887777666
Q ss_pred eccCC---ceeEEEEccCCCEEEEEeC--------------------CCCEEEEEcCCCeeeeecccCCcc-eEEEEEEE
Q 015490 206 SEAHA---SVKDLSFSPDGKFLVSLGN--------------------RGPGRVWDLASSAVATPLAKENDE-LFASCRFS 261 (406)
Q Consensus 206 ~~~~~---~i~~~~~s~~~~~l~s~s~--------------------d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~ 261 (406)
..... --.++-|.|..+.++|... ..++.+||+.+.+.++++...... ..-.+.|.
T Consensus 174 e~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRfl 253 (461)
T PF05694_consen 174 EKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFL 253 (461)
T ss_dssp -SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-
T ss_pred ccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEec
Confidence 54332 4567888998888887642 357999999999999988765544 35578887
Q ss_pred cCCCCceEEEEEEEcCCCcEEEEEeC-CCce--EEEEeeec-------------------CCCeEEEEEcCCCCEEEEEe
Q 015490 262 PLNNEDYVLYIAAITDRGASIVTWNT-TTWK--RIRTKQVV-------------------REPVSSFNVSADGKLLAVGT 319 (406)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~i~~~d~-~~~~--~~~~~~~~-------------------~~~i~~~~~sp~~~~l~~~~ 319 (406)
.+.....-+ +.+ .-...|..|-- ..++ ..+.+... ..-|+.+..|.|.++|.+.+
T Consensus 254 H~P~~~~gF-vg~--aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~ 330 (461)
T PF05694_consen 254 HDPDANYGF-VGC--ALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSN 330 (461)
T ss_dssp SSTT--EEE-EEE--E--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEE
T ss_pred CCCCccceE-EEE--eccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEc
Confidence 765542222 221 23455555533 3222 21211111 23478999999999999887
Q ss_pred C-CCcEEEEECCCc---eEEEEeecc---------------cccceEEEEEcCCCCeEEEE
Q 015490 320 A-SGDISIIDSSSL---QVRTAVKKA---------------HLGIVTALAFSYDSRALVSA 361 (406)
Q Consensus 320 ~-dg~i~i~d~~~~---~~~~~~~~~---------------~~~~v~~~~~sp~~~~l~s~ 361 (406)
. +|.|+.||+... +...++.-+ -.+...-++.|-||+.|...
T Consensus 331 W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 331 WLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp TTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred ccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 6 899999999763 333332211 11234667888888877644
No 307
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.73 E-value=7e-09 Score=97.85 Aligned_cols=199 Identities=13% Similarity=0.132 Sum_probs=144.6
Q ss_pred eccccc-CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCC--CEEEEEc
Q 015490 162 SQLENV-GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRG--PGRVWDL 238 (406)
Q Consensus 162 ~~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~--~i~iwd~ 238 (406)
+.++.+ ...+|++|+-+.+.|++|+..|.|++|++.+|........|..+|+.+.-+.||..+++.+.-. -..+|++
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence 334443 6789999999999999999999999999999999989999999999999999999877765433 4678998
Q ss_pred CC-CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeee----cCCCeEEEEEcCCCC
Q 015490 239 AS-SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV----VREPVSSFNVSADGK 313 (406)
Q Consensus 239 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~----~~~~i~~~~~sp~~~ 313 (406)
.+ +...+.+.. -.++.|+..... -+.+.......+||+.++..+.++-. ....-.+..|+|+..
T Consensus 1175 ~s~~~~~Hsf~e-----d~~vkFsn~~q~------r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1175 SSTGGPRHSFDE-----DKAVKFSNSLQF------RALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT 1243 (1516)
T ss_pred ccccCccccccc-----cceeehhhhHHH------HHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc
Confidence 64 334444432 336777765432 23334456788999999877655321 122336788999988
Q ss_pred EEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCchH
Q 015490 314 LLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLNL 383 (406)
Q Consensus 314 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 383 (406)
+++ .|| .+||.+..+.++.+.+ .+.. ..-.|+|.|.-++.-+. |||+++.+.++.+|-
T Consensus 1244 LIl---ndG--vLWDvR~~~aIh~FD~-ft~~-~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~ 1301 (1516)
T KOG1832|consen 1244 LIL---NDG--VLWDVRIPEAIHRFDQ-FTDY-GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPS 1301 (1516)
T ss_pred eEe---eCc--eeeeeccHHHHhhhhh-heec-ccccccCCCceEEeech-----hhhhHHHHHHhcCcc
Confidence 776 466 5899998877777652 2221 23468999998887653 999999888776653
No 308
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.73 E-value=4.8e-08 Score=82.71 Aligned_cols=131 Identities=12% Similarity=0.121 Sum_probs=97.2
Q ss_pred cccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc----ceEeeeeccCCceeEEEEcc-CCCEEEEEeCCCCEEEEE
Q 015490 163 QLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSL----EIILNESEAHASVKDLSFSP-DGKFLVSLGNRGPGRVWD 237 (406)
Q Consensus 163 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~iwd 237 (406)
.+...+.|.++.|...++++..|+.+|.|..+|++.+ .......-|...|+++.... ++++|++.+.+|+|++||
T Consensus 248 sf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD 327 (425)
T KOG2695|consen 248 SFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYD 327 (425)
T ss_pred ccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEee
Confidence 3445577888999998999999999999999999765 22223345677888888766 788999999999999999
Q ss_pred cCCCee---eeecccCCcceEE-EEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeec
Q 015490 238 LASSAV---ATPLAKENDELFA-SCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVV 299 (406)
Q Consensus 238 ~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 299 (406)
++.-++ +..+.+|...... -+...+... +++++++|...++|.++.+..+.++...
T Consensus 328 ~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg------~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 328 LRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG------SIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred ehhhhcccceeeeecccccccccccccccccc------eEEEccCeeEEEEEecccCceeeccCCC
Confidence 987776 7777766432211 122233333 3445788999999999999988877654
No 309
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=9.8e-07 Score=76.50 Aligned_cols=245 Identities=16% Similarity=0.165 Sum_probs=137.0
Q ss_pred eeEEecCCCCceEEEEccCCCeE-EEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCC-CEE
Q 015490 106 VAELRTDSDLPYRMAIHPHGDGI-ICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEG-TIF 182 (406)
Q Consensus 106 ~~~~~~h~~~v~~~~~sp~~~~l-~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l 182 (406)
..-+.+|...|..++|+|..+-| ..++ ++.++|.++. +...+..+..+..+.+++|.-|. +++
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dle--------------t~~~vssy~a~~~~wSC~wDlde~h~I 251 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLE--------------TSCVVSSYIAYNQIWSCCWDLDERHVI 251 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecc--------------cceeeeheeccCCceeeeeccCCccee
Confidence 44667788899999999998844 4444 8888887766 33344555566889999998866 678
Q ss_pred EEeeCCCeEEEEeCCCcceEee-eec--cCCceeEEEE------ccCCCEEEEEeCCCCEEEEEcCC--CeeeeecccCC
Q 015490 183 AAGSENGNLRVFKWPSLEIILN-ESE--AHASVKDLSF------SPDGKFLVSLGNRGPGRVWDLAS--SAVATPLAKEN 251 (406)
Q Consensus 183 ~~~~~dg~i~vwd~~~~~~~~~-~~~--~~~~i~~~~~------s~~~~~l~s~s~d~~i~iwd~~~--~~~~~~~~~~~ 251 (406)
+.|..+|.|.|||++..+-... +.. ...+|..++. .+.+.+++..+.+ +..|++.- +.....++...
T Consensus 252 YaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~ 329 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEP 329 (463)
T ss_pred EEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCC
Confidence 8888899999999976543221 111 1113433333 2334445444443 44555432 22222333333
Q ss_pred cceEEEEEEEcCCCCceEEEEEEEcCCCc---EE----EEEeCCCceEEEEee-ec-CC------CeEEEEEcCCCCEEE
Q 015490 252 DELFASCRFSPLNNEDYVLYIAAITDRGA---SI----VTWNTTTWKRIRTKQ-VV-RE------PVSSFNVSADGKLLA 316 (406)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~i----~~~d~~~~~~~~~~~-~~-~~------~i~~~~~sp~~~~l~ 316 (406)
.+...++.+.+..++ ++++...+. .+ .-.|-..+..+-..+ .+ .+ .-..+.-.+++++|+
T Consensus 330 pG~cismqy~~~snh-----~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv 404 (463)
T KOG1645|consen 330 PGICISMQYHGVSNH-----LLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIV 404 (463)
T ss_pred CcceeeeeecCccce-----EEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEE
Confidence 334445555554444 122211110 00 011222222221111 11 00 001122234556655
Q ss_pred E-EeCCCcEEEEECCCceEEEEeecccccceEEEEEcC-C-CCeEEEEECCCcEEEEEecC
Q 015490 317 V-GTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSY-D-SRALVSASMDSSVRVTVIED 374 (406)
Q Consensus 317 ~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp-~-~~~l~s~s~dg~i~iw~~~~ 374 (406)
. +...+.+.+||..+++.+.++. -+.+|.+++... + +.+|++- .|..++|+..++
T Consensus 405 ~~gd~tn~lil~D~~s~evvQ~l~--~~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~es 462 (463)
T KOG1645|consen 405 VVGDSTNELILQDPHSFEVVQTLA--LSEPVLDICPNDTNGSSYLALL-TDDRVHIYKNES 462 (463)
T ss_pred EecCCcceeEEeccchhheeeecc--cCcceeecceeecCCcchhhhe-ecceEEEEecCC
Confidence 4 4456789999999999999985 567888777654 2 3466655 466799987654
No 310
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=1.1e-06 Score=82.79 Aligned_cols=188 Identities=15% Similarity=0.164 Sum_probs=128.8
Q ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeec
Q 015490 168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPL 247 (406)
Q Consensus 168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 247 (406)
..+.|++++ ++.|+.|+.+|.|++++.... . .....|... ..+|.++++|+.||++.|-.+-+.+...++
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 445566664 468999999999999996533 2 233333322 568999999999999999998888776665
Q ss_pred ccCCcceEEEEEEEcCC-CCceEEEEEEEcCCCcEEEEEeCCCc--eEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcE
Q 015490 248 AKENDELFASCRFSPLN-NEDYVLYIAAITDRGASIVTWNTTTW--KRIRTKQVVREPVSSFNVSADGKLLAVGTASGDI 324 (406)
Q Consensus 248 ~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i 324 (406)
.. ..++.+++++|+- +.... -.++|+..| +.++.-+=. +....+....++|.+++|. |++||-++.+| |
T Consensus 110 df--~rpiksial~Pd~~~~~sk--~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v 181 (846)
T KOG2066|consen 110 DF--KRPIKSIALHPDFSRQQSK--QFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-V 181 (846)
T ss_pred ec--CCcceeEEeccchhhhhhh--heeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-c
Confidence 43 3467899999981 11001 234556566 777654311 1112344456899999998 88999998887 9
Q ss_pred EEEECCCceEEEEeeccccc-----ceEEEEEcCCCCeEEEEECCCcEEEEEecCC
Q 015490 325 SIIDSSSLQVRTAVKKAHLG-----IVTALAFSYDSRALVSASMDSSVRVTVIEDK 375 (406)
Q Consensus 325 ~i~d~~~~~~~~~~~~~~~~-----~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~ 375 (406)
++||+.+.+.+..+...+.. ....+.|.++.+. +. |+..+|+|..++.+
T Consensus 182 ~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~L-VI-GW~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 182 KVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRL-VI-GWGDSVKICSIKKR 235 (846)
T ss_pred EEEeccccceeeccCCCCCCCCcccCCCceEecCCCeE-EE-ecCCeEEEEEEecc
Confidence 99999999888777644421 1346788877553 33 45667999999843
No 311
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.70 E-value=7.7e-08 Score=56.39 Aligned_cols=39 Identities=33% Similarity=0.454 Sum_probs=36.8
Q ss_pred ceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 015490 290 WKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIID 328 (406)
Q Consensus 290 ~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d 328 (406)
++++.++.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 312
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.70 E-value=1.2e-05 Score=73.26 Aligned_cols=258 Identities=16% Similarity=0.138 Sum_probs=138.2
Q ss_pred EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecc-----
Q 015490 90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQL----- 164 (406)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----- 164 (406)
.++.++.+.. .+..+......+....|||+|+.++...++. ||..+..++ ...++..........-.
T Consensus 24 ~y~i~d~~~~-----~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~n--ly~~~~~~~-~~~~lT~dg~~~i~nG~~dwvy 95 (353)
T PF00930_consen 24 DYYIYDIETG-----EITPLTPPPPKLQDAKWSPDGKYIAFVRDNN--LYLRDLATG-QETQLTTDGEPGIYNGVPDWVY 95 (353)
T ss_dssp EEEEEETTTT-----EEEESS-EETTBSEEEE-SSSTEEEEEETTE--EEEESSTTS-EEEESES--TTTEEESB--HHH
T ss_pred eEEEEecCCC-----ceEECcCCccccccceeecCCCeeEEEecCc--eEEEECCCC-CeEEeccccceeEEcCccceec
Confidence 4555666553 2223322267789999999999999998775 555555444 22222221100000000
Q ss_pred cc--cCcEEEEEECCCCCEEEEeeCC-C-----------------------------------eEEEEeCCCcceEe-ee
Q 015490 165 EN--VGQQLALTFDSEGTIFAAGSEN-G-----------------------------------NLRVFKWPSLEIIL-NE 205 (406)
Q Consensus 165 ~~--~~~v~~~~~s~~g~~l~~~~~d-g-----------------------------------~i~vwd~~~~~~~~-~~ 205 (406)
+. -+.-..+.|||||++||....| . .+.|+|+.+++... ..
T Consensus 96 eEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~ 175 (353)
T PF00930_consen 96 EEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDP 175 (353)
T ss_dssp HHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE--
T ss_pred cccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeee
Confidence 00 1223568899999998875322 1 24455665554321 11
Q ss_pred e----ccCCceeEEEEccCCCEEEEE--eCCC---CEEEEEcCCCeeeeecccCCcce---EEEEEEE-cCCCCceEEEE
Q 015490 206 S----EAHASVKDLSFSPDGKFLVSL--GNRG---PGRVWDLASSAVATPLAKENDEL---FASCRFS-PLNNEDYVLYI 272 (406)
Q Consensus 206 ~----~~~~~i~~~~~s~~~~~l~s~--s~d~---~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~l~~ 272 (406)
. ....-+..+.|.++++.|+.. +++. .+.++|..++............. .....|. +++.. .+ .
T Consensus 176 ~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~--~l-~ 252 (353)
T PF00930_consen 176 PNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNE--FL-W 252 (353)
T ss_dssp -HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSE--EE-E
T ss_pred ccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCE--EE-E
Confidence 1 122267889999999844433 3333 36677887765543332222211 1234454 66654 23 3
Q ss_pred EEEcCCCcEEEEEeCCCceEEEEeeecCCCeEE-EEEcCCCCEEEE-EeC----CCcEEEEECC-CceEEEEeecccccc
Q 015490 273 AAITDRGASIVTWNTTTWKRIRTKQVVREPVSS-FNVSADGKLLAV-GTA----SGDISIIDSS-SLQVRTAVKKAHLGI 345 (406)
Q Consensus 273 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~-~~~sp~~~~l~~-~~~----dg~i~i~d~~-~~~~~~~~~~~~~~~ 345 (406)
+...++-..|++++...+.. ..+......|.. +.++++++.|+. +.. ...++..++. .+.. ..+. ...+.
T Consensus 253 ~s~~~G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~-~~LT-~~~~~ 329 (353)
T PF00930_consen 253 ISERDGYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP-KCLT-CEDGD 329 (353)
T ss_dssp EEETTSSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE-EESS-TTSST
T ss_pred EEEcCCCcEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe-Eecc-CCCCC
Confidence 33345566788888887663 456655666744 778888776654 443 2357777777 4444 4443 22222
Q ss_pred eEEEEEcCCCCeEEEE
Q 015490 346 VTALAFSYDSRALVSA 361 (406)
Q Consensus 346 v~~~~~sp~~~~l~s~ 361 (406)
-..+.|||++++++-.
T Consensus 330 ~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 330 HYSASFSPDGKYYVDT 345 (353)
T ss_dssp TEEEEE-TTSSEEEEE
T ss_pred ceEEEECCCCCEEEEE
Confidence 2689999999987643
No 313
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.70 E-value=6e-06 Score=77.52 Aligned_cols=234 Identities=12% Similarity=0.032 Sum_probs=139.3
Q ss_pred CCCeEEEEecCCeEEEEEecccccceeecceecc----ceeeecccccCcEEE-----EEECCCCCEEEE-eeCCCeEEE
Q 015490 124 HGDGIICALQNSCRLFEWDEVENTEIRRLGVKIS----EKVLSQLENVGQQLA-----LTFDSEGTIFAA-GSENGNLRV 193 (406)
Q Consensus 124 ~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~-----~~~s~~g~~l~~-~~~dg~i~v 193 (406)
||++|+.-.....|+-.++....+....+.++.. .-..+.......|.| +=++|||+.+.. .-..+.+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 6777877653444665555554443333322211 111111122223322 345667765533 334577888
Q ss_pred EeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCC----CEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceE
Q 015490 194 FKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRG----PGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYV 269 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (406)
.|.++.+...++.-.. ....++++++|+++++.+.+. ++..-+..+......+.... .-++.++++.
T Consensus 220 ID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~-----iea~vkdGK~--- 290 (635)
T PRK02888 220 VDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR-----IEEAVKAGKF--- 290 (635)
T ss_pred EECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH-----HHHhhhCCCE---
Confidence 8988877766654433 446789999999998886432 22222222111111111000 0123345653
Q ss_pred EEEEEEcCCCcEEEEEeCCC-----ceEEEEeeecCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCceE---------
Q 015490 270 LYIAAITDRGASIVTWNTTT-----WKRIRTKQVVREPVSSFNVSADGKLLAVGTA-SGDISIIDSSSLQV--------- 334 (406)
Q Consensus 270 l~~~~~~~~~~~i~~~d~~~-----~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~~~~--------- 334 (406)
... .++.|.++|.++ .+.+..+... .....+.++|||+++++++. +.+|.|+|+.+.+.
T Consensus 291 --~~V---~gn~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~ 364 (635)
T PRK02888 291 --KTI---GGSKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPR 364 (635)
T ss_pred --EEE---CCCEEEEEECCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCcc
Confidence 122 267899999998 4555555544 45689999999999988776 89999999987552
Q ss_pred ---EEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490 335 ---RTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED 374 (406)
Q Consensus 335 ---~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~ 374 (406)
..+.. -.......+|.++|....|.-.|..|..|++.+
T Consensus 365 ~~vvaeve--vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 365 DAVVAEPE--LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ceEEEeec--cCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 33332 122345778999999888889999999999986
No 314
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.70 E-value=5.6e-08 Score=82.35 Aligned_cols=157 Identities=11% Similarity=0.133 Sum_probs=112.3
Q ss_pred EEEccC--CCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc--
Q 015490 215 LSFSPD--GKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW-- 290 (406)
Q Consensus 215 ~~~s~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~-- 290 (406)
++|+-+ +-. ++.+.+..+-+-|+++|.... +. ....|-++.|...++ ++..|..+|.|..+|++.+
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~qs-f~--sksDVfAlQf~~s~n------Lv~~GcRngeI~~iDLR~rnq 286 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQS-FQ--SKSDVFALQFAGSDN------LVFNGCRNGEIFVIDLRCRNQ 286 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeecccccc-cc--cchhHHHHHhcccCC------eeEecccCCcEEEEEeeeccc
Confidence 356532 333 556667788889988775432 22 233455677777666 5677889999999999875
Q ss_pred ---eEEEEeeecCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCceE---EEEeecccccceE--EEEEcCCCCeEEEE
Q 015490 291 ---KRIRTKQVVREPVSSFNVSA-DGKLLAVGTASGDISIIDSSSLQV---RTAVKKAHLGIVT--ALAFSYDSRALVSA 361 (406)
Q Consensus 291 ---~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~--~~~~sp~~~~l~s~ 361 (406)
.+...+ .|...|+++..-. ++++|++.+.+|+|.+||++.-+. +.++. +|...-. -+...+....++++
T Consensus 287 G~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe-GHvN~~a~l~~~v~~eeg~I~s~ 364 (425)
T KOG2695|consen 287 GNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE-GHVNLSAYLPAHVKEEEGSIFSV 364 (425)
T ss_pred CCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee-cccccccccccccccccceEEEc
Confidence 233333 4677888887665 688999999999999999987666 66665 7754332 23345566788899
Q ss_pred ECCCcEEEEEecCCcCCCCchH
Q 015490 362 SMDSSVRVTVIEDKKKSGGLNL 383 (406)
Q Consensus 362 s~dg~i~iw~~~~~~~~~~~~~ 383 (406)
+.|...|||.++++..+.++|+
T Consensus 365 GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 365 GDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred cCeeEEEEEecccCceeeccCC
Confidence 9999999999999988877765
No 315
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.69 E-value=6.6e-07 Score=85.20 Aligned_cols=148 Identities=19% Similarity=0.282 Sum_probs=113.7
Q ss_pred EEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeC---------CCCEEEEEcCC
Q 015490 170 QLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGN---------RGPGRVWDLAS 240 (406)
Q Consensus 170 v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~---------d~~i~iwd~~~ 240 (406)
|.-++. +++.+.+|...|+|.+-|.++.+.+..+..|.+.|.++.. .|+.|++++. |..|+|||++.
T Consensus 180 v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRm 255 (1118)
T KOG1275|consen 180 VTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRM 255 (1118)
T ss_pred eEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhh
Confidence 444443 6789999999999999999999999999999998877766 5889999875 56789999999
Q ss_pred CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC---Cc-eEEEEeeecCCCeEEEEEcCCCCEEE
Q 015490 241 SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT---TW-KRIRTKQVVREPVSSFNVSADGKLLA 316 (406)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~---~~-~~~~~~~~~~~~i~~~~~sp~~~~l~ 316 (406)
.+.+..+..+.+. .-+.|+|.-.. .++..+..|...+.|.. +. ..+..+......+..+++|++++.++
T Consensus 256 mral~PI~~~~~P--~flrf~Psl~t-----~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~ala 328 (1118)
T KOG1275|consen 256 MRALSPIQFPYGP--QFLRFHPSLTT-----RLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALA 328 (1118)
T ss_pred hhccCCcccccCc--hhhhhcccccc-----eEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEE
Confidence 8887777655443 34778887654 34455667888888843 22 12233333345699999999999999
Q ss_pred EEeCCCcEEEEE
Q 015490 317 VGTASGDISIID 328 (406)
Q Consensus 317 ~~~~dg~i~i~d 328 (406)
.|..+|.|.+|.
T Consensus 329 fgd~~g~v~~wa 340 (1118)
T KOG1275|consen 329 FGDHEGHVNLWA 340 (1118)
T ss_pred EecccCcEeeec
Confidence 999999999997
No 316
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.68 E-value=1e-05 Score=79.81 Aligned_cols=205 Identities=15% Similarity=0.131 Sum_probs=132.1
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEc----CC-
Q 015490 166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDL----AS- 240 (406)
Q Consensus 166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~----~~- 240 (406)
+.+.|.++.|..++..++.+..+|.|.+-|.++..... ...-...|.+++||||++.++..+..+++.+-+- -.
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence 44689999999999999999999999999877665432 2223458999999999999999988877765432 00
Q ss_pred ------------------CeeeeecccC--------------------CcceEEEEEEEcCCCCceEEEE-EEEcCCCcE
Q 015490 241 ------------------SAVATPLAKE--------------------NDELFASCRFSPLNNEDYVLYI-AAITDRGAS 281 (406)
Q Consensus 241 ------------------~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~ 281 (406)
|+....+.+. ....-+.+.|.-+|.. .... .....+.+.
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~--fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEY--FAVSFVESETGTRK 223 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcE--EEEEEEeccCCcee
Confidence 1111111100 0111235889989884 1111 111222389
Q ss_pred EEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCce---EEEEeecccccceEEEEEcCCC
Q 015490 282 IVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA---SGDISIIDSSSLQ---VRTAVKKAHLGIVTALAFSYDS 355 (406)
Q Consensus 282 i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~---dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~sp~~ 355 (406)
|++||.+ +..-..-....+.-.+++|-|.|..+++-.. |+.|.+|.-+..+ ....+. ....++..++|+.++
T Consensus 224 irV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p-~de~~ve~L~Wns~s 301 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFP-LDEKEVEELAWNSNS 301 (1265)
T ss_pred EEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCc-ccccchheeeecCCC
Confidence 9999987 4432222222334468999999999987543 6679999854322 111121 223348999999999
Q ss_pred CeEEE---EECCCcEEEEEecCC
Q 015490 356 RALVS---ASMDSSVRVTVIEDK 375 (406)
Q Consensus 356 ~~l~s---~s~dg~i~iw~~~~~ 375 (406)
..|++ ......|++|-+.+-
T Consensus 302 diLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 302 DILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CceeeeecccccceEEEEEecCe
Confidence 99887 445555999998763
No 317
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.65 E-value=1.7e-05 Score=78.26 Aligned_cols=203 Identities=11% Similarity=0.096 Sum_probs=124.1
Q ss_pred CCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCe
Q 015490 112 DSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGN 190 (406)
Q Consensus 112 h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 190 (406)
..+.|.++.|..++..++.+. .|++.+. +..+... ..+ -.....|.+++||||++.++..+.+++
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilv--d~et~~~----------eiv--g~vd~GI~aaswS~Dee~l~liT~~~t 132 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILV--DPETLEL----------EIV--GNVDNGISAASWSPDEELLALITGRQT 132 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEE--cccccce----------eee--eeccCceEEEeecCCCcEEEEEeCCcE
Confidence 346899999999888777765 6766554 3321110 000 012468999999999999999888888
Q ss_pred EEEEeCC----C-------------------cceEeeeec---------------------cCCceeEEEEccCCCEEEE
Q 015490 191 LRVFKWP----S-------------------LEIILNESE---------------------AHASVKDLSFSPDGKFLVS 226 (406)
Q Consensus 191 i~vwd~~----~-------------------~~~~~~~~~---------------------~~~~i~~~~~s~~~~~l~s 226 (406)
+.+-+-. . |+....+.+ .++.=..|.|--||+++++
T Consensus 133 ll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAV 212 (1265)
T KOG1920|consen 133 LLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAV 212 (1265)
T ss_pred EEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEE
Confidence 7765420 0 000011110 0111235999999999998
Q ss_pred Ee-----CCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc---eEEEEeee
Q 015490 227 LG-----NRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW---KRIRTKQV 298 (406)
Q Consensus 227 ~s-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~---~~~~~~~~ 298 (406)
.. ..+.|++||-+ |.... ........-.+++|-|.|.. +..+-....++.|.++..+.. .....+..
T Consensus 213 s~~~~~~~~RkirV~drE-g~Lns-~se~~~~l~~~LsWkPsgs~---iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~ 287 (1265)
T KOG1920|consen 213 SFVESETGTRKIRVYDRE-GALNS-TSEPVEGLQHSLSWKPSGSL---IAAIQCKTSDSDIVFFERNGLRHGEFVLPFPL 287 (1265)
T ss_pred EEEeccCCceeEEEeccc-chhhc-ccCcccccccceeecCCCCe---EeeeeecCCCCcEEEEecCCccccccccCCcc
Confidence 43 33789999986 43322 22222333457999998873 212222344567888876542 22222233
Q ss_pred cCCCeEEEEEcCCCCEEEE---EeCCCcEEEEECCCce
Q 015490 299 VREPVSSFNVSADGKLLAV---GTASGDISIIDSSSLQ 333 (406)
Q Consensus 299 ~~~~i~~~~~sp~~~~l~~---~~~dg~i~i~d~~~~~ 333 (406)
....+..++|+.++..|++ ......|++|-+.+..
T Consensus 288 de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 288 DEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred cccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 3345899999999999988 4445559999887643
No 318
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.65 E-value=8.2e-06 Score=75.08 Aligned_cols=193 Identities=19% Similarity=0.227 Sum_probs=117.9
Q ss_pred eEEecCCCCceEEEEccCCCeEEEEe--cCC-eEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEE
Q 015490 107 AELRTDSDLPYRMAIHPHGDGIICAL--QNS-CRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFA 183 (406)
Q Consensus 107 ~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 183 (406)
..+..-...+..-+|+|++..++... .+. .++|.++...+.....+. ..+.-..-+|+|||+.|+
T Consensus 186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~------------~~g~~~~P~fspDG~~l~ 253 (425)
T COG0823 186 QKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN------------FNGNNGAPAFSPDGSKLA 253 (425)
T ss_pred eEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec------------cCCccCCccCCCCCCEEE
Confidence 34444456677789999999887664 333 578888877654333321 223334568999998777
Q ss_pred Ee-eCCCe--EEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCC-C--CEEEEEcCCCeeeeecccCCcceEEE
Q 015490 184 AG-SENGN--LRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNR-G--PGRVWDLASSAVATPLAKENDELFAS 257 (406)
Q Consensus 184 ~~-~~dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~ 257 (406)
.. ..||. |.++|+.++... .+....+.-..-.|+|||+.++..++. | .|.++|...+...+ +........ .
T Consensus 254 f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r-iT~~~~~~~-~ 330 (425)
T COG0823 254 FSSSRDGSPDIYLMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR-LTFSGGGNS-N 330 (425)
T ss_pred EEECCCCCccEEEEcCCCCcce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE-eeccCCCCc-C
Confidence 55 44554 666777666633 344444434478899999998887653 3 46667776655433 222222222 6
Q ss_pred EEEEcCCCCceEEEEEEEcCCCc--EEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC
Q 015490 258 CRFSPLNNEDYVLYIAAITDRGA--SIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA 320 (406)
Q Consensus 258 ~~~~~~~~~~~~l~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~ 320 (406)
..|+|+++. ++.....+| .|.+.|+.++...+.+. ........+|.++++.+...+.
T Consensus 331 p~~SpdG~~-----i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 331 PVWSPDGDK-----IVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred ccCCCCCCE-----EEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEecc
Confidence 789999996 222222233 47777776655434333 2334456788899988776554
No 319
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.64 E-value=6.2e-05 Score=63.76 Aligned_cols=202 Identities=13% Similarity=0.200 Sum_probs=119.3
Q ss_pred EEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC
Q 015490 108 ELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE 187 (406)
Q Consensus 108 ~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 187 (406)
.+.+-.+.+..++|+|+...|++..+....|+.++.. ++.++.+.+ .+.+..-.+++..++.++++--.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l----------~g~~D~EgI~y~g~~~~vl~~Er 84 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPL----------DGFGDYEGITYLGNGRYVLSEER 84 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-----------SS-SSEEEEEE-STTEEEEEETT
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeC----------CCCCCceeEEEECCCEEEEEEcC
Confidence 3445556689999999999999988888889988863 444444333 24467788999888877777666
Q ss_pred CCeEEEEeCCCcc------eEeeee-----ccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCC---Ceeeee-----cc
Q 015490 188 NGNLRVFKWPSLE------IILNES-----EAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLAS---SAVATP-----LA 248 (406)
Q Consensus 188 dg~i~vwd~~~~~------~~~~~~-----~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~---~~~~~~-----~~ 248 (406)
++.+.++++.... ....+. .+...+-.++|++.++.|+.+-......+|.+.. ...... +.
T Consensus 85 ~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~ 164 (248)
T PF06977_consen 85 DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLD 164 (248)
T ss_dssp TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH
T ss_pred CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccc
Confidence 8999999983321 111111 1233689999999988888887777777777654 111110 00
Q ss_pred --cCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC---------CCeEEEEEcCCCCEEEE
Q 015490 249 --KENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR---------EPVSSFNVSADGKLLAV 317 (406)
Q Consensus 249 --~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~---------~~i~~~~~sp~~~~l~~ 317 (406)
...-..+.+++++|...+ +.+..+....|..+| .+++.+..+.... .....|+|.++|++.+
T Consensus 165 ~~~~~~~d~S~l~~~p~t~~-----lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI- 237 (248)
T PF06977_consen 165 DDKLFVRDLSGLSYDPRTGH-----LLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI- 237 (248)
T ss_dssp -HT--SS---EEEEETTTTE-----EEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-
T ss_pred cccceeccccceEEcCCCCe-----EEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-
Confidence 112223678999999886 334457889999999 6667766665543 2568899999996544
Q ss_pred EeCCCcEEEE
Q 015490 318 GTASGDISII 327 (406)
Q Consensus 318 ~~~dg~i~i~ 327 (406)
.++-+..++|
T Consensus 238 vsEpNlfy~f 247 (248)
T PF06977_consen 238 VSEPNLFYRF 247 (248)
T ss_dssp EETTTEEEEE
T ss_pred EcCCceEEEe
Confidence 4565555544
No 320
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.58 E-value=0.00024 Score=62.06 Aligned_cols=272 Identities=14% Similarity=0.127 Sum_probs=152.1
Q ss_pred EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe---c------CCeEEEEEecccccceeecceecccee
Q 015490 90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL---Q------NSCRLFEWDEVENTEIRRLGVKISEKV 160 (406)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~---~------~~~~i~~~~~~~~~~~~~~~~~~~~~~ 160 (406)
.++.+|.+.+.+ +..+.. +-.-.+..+|+++.++++. + .+=.|-.||..+......+.+++....
T Consensus 18 rv~viD~d~~k~----lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 18 RVYVIDADSGKL----LGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEETTTTEE----EEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred eEEEEECCCCcE----EEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 566666665432 222221 2233467899999888642 1 122234466666655555555422111
Q ss_pred eecccccCcEEEEEECCCCCEEEEee--CCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEc
Q 015490 161 LSQLENVGQQLALTFDSEGTIFAAGS--ENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDL 238 (406)
Q Consensus 161 ~~~~~~~~~v~~~~~s~~g~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~ 238 (406)
+... .....++|.||+++++.. --..|.|.|+..++.+..+... + +..+-=+. .+.+.+.+.||++.-..+
T Consensus 92 -~~~~---~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G-C~~iyP~~-~~~F~~lC~DGsl~~v~L 164 (342)
T PF06433_consen 92 -QVVP---YKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G-CWLIYPSG-NRGFSMLCGDGSLLTVTL 164 (342)
T ss_dssp --BS-----GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S-EEEEEEEE-TTEEEEEETTSCEEEEEE
T ss_pred -eecc---cccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-C-EEEEEecC-CCceEEEecCCceEEEEE
Confidence 1111 122358899999887763 3467999999998887665432 2 12221122 245888888999988888
Q ss_pred C-CCeeeee----cccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEE--EEeeec----------CC
Q 015490 239 A-SSAVATP----LAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRI--RTKQVV----------RE 301 (406)
Q Consensus 239 ~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~--~~~~~~----------~~ 301 (406)
. .|+...+ +....+..+..-++...+.. +++ .+.+|.|+-.|+...... ..+... .+
T Consensus 165 d~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~---~~F---~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPG 238 (342)
T PF06433_consen 165 DADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGR---LYF---VSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPG 238 (342)
T ss_dssp TSTSSEEEEEEEESSTTTS-B-S--EEETTTTE---EEE---EBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-
T ss_pred CCCCCEeEeeccccCCCCcccccccceECCCCe---EEE---EecCCEEEEEeccCCcccccCcccccCccccccCcCCc
Confidence 7 4544322 11122222333344444432 111 246788888887654421 222110 12
Q ss_pred CeEEEEEcCCCCEEEEEeC---CC-------cEEEEECCCceEEEEeecccccceEEEEEcCCCC-eEEEEE-CCCcEEE
Q 015490 302 PVSSFNVSADGKLLAVGTA---SG-------DISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSR-ALVSAS-MDSSVRV 369 (406)
Q Consensus 302 ~i~~~~~sp~~~~l~~~~~---dg-------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~s-~dg~i~i 369 (406)
...-+++++..+.|++--. ++ .|.++|+.+++.+.++. ...++.+|..+.+.+ +|++.+ .++.+.+
T Consensus 239 G~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~--l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v 316 (342)
T PF06433_consen 239 GWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP--LEHPIDSIAVSQDDKPLLYALSAGDGTLDV 316 (342)
T ss_dssp SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE--EEEEESEEEEESSSS-EEEEEETTTTEEEE
T ss_pred ceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe--CCCccceEEEccCCCcEEEEEcCCCCeEEE
Confidence 3345788876666655322 11 48999999999999986 345688999998765 565544 5789999
Q ss_pred EEecCCcCCCCch
Q 015490 370 TVIEDKKKSGGLN 382 (406)
Q Consensus 370 w~~~~~~~~~~~~ 382 (406)
||..+++.++++.
T Consensus 317 ~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 317 YDAATGKLVRSIE 329 (342)
T ss_dssp EETTT--EEEEE-
T ss_pred EeCcCCcEEeehh
Confidence 9999999876654
No 321
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.57 E-value=7.1e-06 Score=75.19 Aligned_cols=80 Identities=16% Similarity=0.258 Sum_probs=65.8
Q ss_pred ecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCC
Q 015490 162 SQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASS 241 (406)
Q Consensus 162 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~ 241 (406)
..+.....+.|++++|+...++.|+.||.|.+||...+... .....-..+.++|+|+|..+++|+..|.+.+||+.-.
T Consensus 254 tsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 254 TSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 34556688999999999999999999999999998766333 2233346789999999999999999999999998654
Q ss_pred ee
Q 015490 242 AV 243 (406)
Q Consensus 242 ~~ 243 (406)
..
T Consensus 332 pi 333 (545)
T PF11768_consen 332 PI 333 (545)
T ss_pred cc
Confidence 43
No 322
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.57 E-value=0.00023 Score=65.93 Aligned_cols=220 Identities=13% Similarity=0.116 Sum_probs=125.6
Q ss_pred eEEEEecCCeEEEEEecccccceeecceeccceeeecccc-cCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeee
Q 015490 127 GIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN-VGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNE 205 (406)
Q Consensus 127 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~ 205 (406)
.++++. +...++-+|..+++........ .... .... ..++ . .+..++.++.+|.+..+|..+|+.....
T Consensus 162 ~v~v~~-~~g~l~ald~~tG~~~W~~~~~--~~~~-~~~~~~sP~----v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~ 231 (394)
T PRK11138 162 LVLVHT-SNGMLQALNESDGAVKWTVNLD--VPSL-TLRGESAPA----T--AFGGAIVGGDNGRVSAVLMEQGQLIWQQ 231 (394)
T ss_pred EEEEEC-CCCEEEEEEccCCCEeeeecCC--CCcc-cccCCCCCE----E--ECCEEEEEcCCCEEEEEEccCChhhhee
Confidence 444443 2336777888877777665431 0000 0000 1111 1 1234666778899999999888765543
Q ss_pred eccCC-------ceeEEEEcc--CCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEc
Q 015490 206 SEAHA-------SVKDLSFSP--DGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAIT 276 (406)
Q Consensus 206 ~~~~~-------~i~~~~~s~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (406)
..... ....+.-+| .+..++.++.++.+..+|..+|+..-...... ...+. ..+.. +|+ .
T Consensus 232 ~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~---~~~~~--~~~~~---vy~---~ 300 (394)
T PRK11138 232 RISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS---VNDFA--VDGGR---IYL---V 300 (394)
T ss_pred ccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC---ccCcE--EECCE---EEE---E
Confidence 21110 011111122 24567778889999999999998765443211 11111 12332 222 3
Q ss_pred CCCcEEEEEeCCCceEEEEeeecC-CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceE-EEEEcCC
Q 015490 277 DRGASIVTWNTTTWKRIRTKQVVR-EPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVT-ALAFSYD 354 (406)
Q Consensus 277 ~~~~~i~~~d~~~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~-~~~~sp~ 354 (406)
+.++.+..+|..+++.+-...... ....+... .+.+|++++.+|.+.++|..+++.+..... ....+. ...+ .
T Consensus 301 ~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~-~~~~~~s~P~~--~ 375 (394)
T PRK11138 301 DQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKV-DSSGFLSEPVV--A 375 (394)
T ss_pred cCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc-CCCcceeCCEE--E
Confidence 568899999999987755433211 11222222 256788899999999999999998877652 222222 2222 2
Q ss_pred CCeEEEEECCCcEEEEEe
Q 015490 355 SRALVSASMDSSVRVTVI 372 (406)
Q Consensus 355 ~~~l~s~s~dg~i~iw~~ 372 (406)
+..|+.++.||.|+.+++
T Consensus 376 ~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 376 DDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEEEEEeCCceEEEEeC
Confidence 446888899999988764
No 323
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.56 E-value=1e-05 Score=74.40 Aligned_cols=179 Identities=17% Similarity=0.072 Sum_probs=116.3
Q ss_pred CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEe---CC-CCEEEEEcCCCeeeeecccCCcceEEEEEEEcCC
Q 015490 189 GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLG---NR-GPGRVWDLASSAVATPLAKENDELFASCRFSPLN 264 (406)
Q Consensus 189 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s---~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (406)
..+.+-|.+ +.....+......+..-+|+|+++.++..+ .. ..+.++|+.+++....+... ..-...+|+|++
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~--g~~~~P~fspDG 249 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN--GNNGAPAFSPDG 249 (425)
T ss_pred ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC--CccCCccCCCCC
Confidence 344554543 444545555555788899999999877653 22 35899999988766655422 223357899999
Q ss_pred CCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEECCCceEEEEeecc
Q 015490 265 NEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA-SG--DISIIDSSSLQVRTAVKKA 341 (406)
Q Consensus 265 ~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~ 341 (406)
++ +.+....+..-.|+++|+.+.... .+....+.-..-.|+|||++|+..+. .| .|.++|++.........
T Consensus 250 ~~---l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~-- 323 (425)
T COG0823 250 SK---LAFSSSRDGSPDIYLMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF-- 323 (425)
T ss_pred CE---EEEEECCCCCccEEEEcCCCCcce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec--
Confidence 86 334444455667888899887633 35444444557889999999998776 33 47777887666543332
Q ss_pred cccceEEEEEcCCCCeEEEEECC-Cc--EEEEEecCCc
Q 015490 342 HLGIVTALAFSYDSRALVSASMD-SS--VRVTVIEDKK 376 (406)
Q Consensus 342 ~~~~v~~~~~sp~~~~l~s~s~d-g~--i~iw~~~~~~ 376 (406)
..+.-....|+|||++++..+.. |. |.+.++.++.
T Consensus 324 ~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 324 SGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred cCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 22222278899999999877643 44 5555554443
No 324
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.56 E-value=4.3e-08 Score=92.73 Aligned_cols=219 Identities=12% Similarity=0.108 Sum_probs=147.0
Q ss_pred cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEE
Q 015490 104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIF 182 (406)
Q Consensus 104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 182 (406)
++...++.|+..-+|++|+-+.++|++|. .|.+++|+.+....+. ....|...++.+.-+.||..+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~-------------s~ncH~SavT~vePs~dgs~~ 1158 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE-------------SVNCHQSAVTLVEPSVDGSTQ 1158 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc-------------cccccccccccccccCCccee
Confidence 45667888999999999999999999997 8889998877532211 112255788889989999877
Q ss_pred EEeeCCC--eEEEEeCCC-cceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccC---CcceEE
Q 015490 183 AAGSENG--NLRVFKWPS-LEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKE---NDELFA 256 (406)
Q Consensus 183 ~~~~~dg--~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~---~~~~~~ 256 (406)
++.+.-. ...+|++.. +.....+. .-.++.|+...+.-+.|.......+||+.++....++... ....-.
T Consensus 1159 Ltsss~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n 1234 (1516)
T KOG1832|consen 1159 LTSSSSSSPLSALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNN 1234 (1516)
T ss_pred eeeccccCchHHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcc
Confidence 7654432 467899753 33333332 3467888876555555555567899999998877664321 111235
Q ss_pred EEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEE
Q 015490 257 SCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRT 336 (406)
Q Consensus 257 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~ 336 (406)
+..|+|+..- ++ .|| .+||.+..+.++.|...... ..=.|+|.|.-++.-+ .|||+++.+.++
T Consensus 1235 ~a~FsP~D~L-----Il----ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS-----EIwD~RTF~lLh 1297 (1516)
T KOG1832|consen 1235 LAHFSPCDTL-----IL----NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS-----EIWDMRTFKLLH 1297 (1516)
T ss_pred ccccCCCcce-----Ee----eCc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeec-----hhhhhHHHHHHh
Confidence 6789998872 22 244 47999987777666544322 2345999999998876 499999988776
Q ss_pred EeecccccceEEEEEcCCCCeEE
Q 015490 337 AVKKAHLGIVTALAFSYDSRALV 359 (406)
Q Consensus 337 ~~~~~~~~~v~~~~~sp~~~~l~ 359 (406)
... .. .-..+.|...|..+.
T Consensus 1298 ~VP-~L--dqc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1298 SVP-SL--DQCAVTFNSTGDVMY 1317 (1516)
T ss_pred cCc-cc--cceEEEeccCccchh
Confidence 654 11 223566766666543
No 325
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.50 E-value=0.00034 Score=57.80 Aligned_cols=70 Identities=16% Similarity=0.068 Sum_probs=54.6
Q ss_pred CCCEEEEeeCCCeEEEEeCCCcceEeeeeccCC-ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecc
Q 015490 178 EGTIFAAGSENGNLRVFKWPSLEIILNESEAHA-SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLA 248 (406)
Q Consensus 178 ~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 248 (406)
-|++++.|+..|.+++.+..+|.....+..... .+ .....+++..+..++.|++.+..|.++..++...+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~-~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKV-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhcc-ceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 456799999999999999999977766654333 22 23456788999999999999999998877766544
No 326
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.49 E-value=7.3e-05 Score=69.16 Aligned_cols=231 Identities=13% Similarity=0.113 Sum_probs=117.8
Q ss_pred cceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEE
Q 015490 104 QPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFA 183 (406)
Q Consensus 104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 183 (406)
-....+....-.+..+.++|+|+++++++++.-.|+. ...... ...+......|.+.++ +|
T Consensus 23 l~~k~lg~~~~~p~~ls~npngr~v~V~g~geY~iyt--~~~~r~----------------k~~G~g~~~vw~~~n~-yA 83 (443)
T PF04053_consen 23 LSVKELGSCEIYPQSLSHNPNGRFVLVCGDGEYEIYT--ALAWRN----------------KAFGSGLSFVWSSRNR-YA 83 (443)
T ss_dssp ---EEEEE-SS--SEEEE-TTSSEEEEEETTEEEEEE--TTTTEE----------------EEEEE-SEEEE-TSSE-EE
T ss_pred EEeccCCCCCcCCeeEEECCCCCEEEEEcCCEEEEEE--ccCCcc----------------cccCceeEEEEecCcc-EE
Confidence 3455566666778999999999999998888877775 111000 0123345678988554 66
Q ss_pred EeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcC
Q 015490 184 AGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPL 263 (406)
Q Consensus 184 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (406)
+-...++|.|+.--+.+....+.... .+..+-. |..|...+.+ .|.+||..+++.+.++... .+..+.|+++
T Consensus 84 v~~~~~~I~I~kn~~~~~~k~i~~~~-~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~---~vk~V~Ws~~ 155 (443)
T PF04053_consen 84 VLESSSTIKIYKNFKNEVVKSIKLPF-SVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS---AVKYVIWSDD 155 (443)
T ss_dssp EE-TTS-EEEEETTEE-TT-----SS--EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TT
T ss_pred EEECCCeEEEEEcCccccceEEcCCc-ccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC---CCcEEEEECC
Confidence 66668889996422222211222221 2333322 7777776655 8999999999999988643 3788999999
Q ss_pred CCCceEEEEEEEcCCCcEEEEEeCCCc-----------eEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc
Q 015490 264 NNEDYVLYIAAITDRGASIVTWNTTTW-----------KRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSL 332 (406)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~i~~~d~~~~-----------~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~ 332 (406)
+.. ++..+ +..+++++.+.. .....+..-...|.+.+|..+ .++..+.. .++. +-.|
T Consensus 156 g~~-----val~t--~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~G 223 (443)
T PF04053_consen 156 GEL-----VALVT--KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNG 223 (443)
T ss_dssp SSE-----EEEE---S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETT
T ss_pred CCE-----EEEEe--CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcC
Confidence 884 34443 334555544332 012222221356888888866 44444434 6665 3333
Q ss_pred eEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCC
Q 015490 333 QVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDK 375 (406)
Q Consensus 333 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~ 375 (406)
+.- .+. .-..++.=+...+....+.....|+.|..+.+...
T Consensus 224 e~~-~i~-~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 224 ETG-IIA-HLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp EEE-EEE-E-SS--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred Ccc-eEE-EcCCceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 322 221 12345666677776678888889999998888653
No 327
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.48 E-value=0.00018 Score=66.66 Aligned_cols=229 Identities=11% Similarity=0.090 Sum_probs=133.4
Q ss_pred CCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEE-EEECCCCCEEEEeeCCCeEEEEeCCCcceEe
Q 015490 125 GDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLA-LTFDSEGTIFAAGSENGNLRVFKWPSLEIIL 203 (406)
Q Consensus 125 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~ 203 (406)
+..++++. ....++-+|..+++...+.... +.+.+ ... .+..++.+..++.+..+|.++|+.+.
T Consensus 120 ~~~v~v~~-~~g~l~ald~~tG~~~W~~~~~------------~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W 184 (394)
T PRK11138 120 GGKVYIGS-EKGQVYALNAEDGEVAWQTKVA------------GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKW 184 (394)
T ss_pred CCEEEEEc-CCCEEEEEECCCCCCcccccCC------------CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEee
Confidence 44555554 2336777888877777665431 11111 111 23456677788999999999999887
Q ss_pred eeeccCCce-----eEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcc------eEEEEEEEc--CCCCceEE
Q 015490 204 NESEAHASV-----KDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDE------LFASCRFSP--LNNEDYVL 270 (406)
Q Consensus 204 ~~~~~~~~i-----~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~------~~~~~~~~~--~~~~~~~l 270 (406)
........+ ..... .+..++.++.++.+..+|..+|+..-........ ....+.-+| .+. .+
T Consensus 185 ~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~---~v 259 (394)
T PRK11138 185 TVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG---VV 259 (394)
T ss_pred eecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECC---EE
Confidence 664321110 11111 1235677788899999999988765443211100 000011111 122 12
Q ss_pred EEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEE
Q 015490 271 YIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALA 350 (406)
Q Consensus 271 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 350 (406)
|+ .+.++.+..+|..+++.+-...... ...+. ..+..+++++.+|.+..+|..+++.+-...........+..
T Consensus 260 y~---~~~~g~l~ald~~tG~~~W~~~~~~--~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~ 332 (394)
T PRK11138 260 YA---LAYNGNLVALDLRSGQIVWKREYGS--VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPV 332 (394)
T ss_pred EE---EEcCCeEEEEECCCCCEEEeecCCC--ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCE
Confidence 22 2357899999999998765543221 11222 24667888889999999999998876543211111122222
Q ss_pred EcCCCCeEEEEECCCcEEEEEecCCcCCCCch
Q 015490 351 FSYDSRALVSASMDSSVRVTVIEDKKKSGGLN 382 (406)
Q Consensus 351 ~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~ 382 (406)
. .+..|+.++.||.|+..|..+++.+.+.+
T Consensus 333 v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~ 362 (394)
T PRK11138 333 L--YNGYLVVGDSEGYLHWINREDGRFVAQQK 362 (394)
T ss_pred E--ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 2 24567888999999999999988765443
No 328
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=7.7e-06 Score=77.22 Aligned_cols=141 Identities=11% Similarity=0.150 Sum_probs=95.0
Q ss_pred ccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCC-----CCEEEEeeCCCeEEEEe
Q 015490 122 HPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSE-----GTIFAAGSENGNLRVFK 195 (406)
Q Consensus 122 sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----g~~l~~~~~dg~i~vwd 195 (406)
..+|.++++++ ||.+.|...... +....+.-+.++.+++++|+ .+.+++|+.-| +.++.
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~--------------~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~e 144 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTD--------------DEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSE 144 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCC--------------ccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEeh
Confidence 55799999998 777777655432 22223345578899999998 47899999888 77765
Q ss_pred CC--CcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcc-----eEEEEEEEcCCCCce
Q 015490 196 WP--SLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDE-----LFASCRFSPLNNEDY 268 (406)
Q Consensus 196 ~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 268 (406)
-+ ..+....+....++|.++.|. |+++|.++++| |++||..+++.+..++..+.. ....+.|.++.+-
T Consensus 145 r~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~L-- 219 (846)
T KOG2066|consen 145 RNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRL-- 219 (846)
T ss_pred hhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeE--
Confidence 32 111111344556699999996 77888888775 899999999888777654422 2345778877651
Q ss_pred EEEEEEEcCCCcEEEEEeCC
Q 015490 269 VLYIAAITDRGASIVTWNTT 288 (406)
Q Consensus 269 ~l~~~~~~~~~~~i~~~d~~ 288 (406)
++ +...+|++..++
T Consensus 220 ---VI---GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 220 ---VI---GWGDSVKICSIK 233 (846)
T ss_pred ---EE---ecCCeEEEEEEe
Confidence 22 345567777665
No 329
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=0.00049 Score=63.18 Aligned_cols=244 Identities=15% Similarity=0.177 Sum_probs=163.8
Q ss_pred CceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCC-EEEEeeCCCeEE
Q 015490 115 LPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGT-IFAAGSENGNLR 192 (406)
Q Consensus 115 ~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~-~l~~~~~dg~i~ 192 (406)
....+...|++..+.+.....-.+...+.. ...... ..... .....+++++++. .++....++.|.
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~-----------~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~ 99 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQ-----------SLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVS 99 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeee-----------eccCCCccccceeeCCCCCeEEEecCCCCeEE
Confidence 567788888887666654222144444433 111110 00111 3345778888887 444555568999
Q ss_pred EEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeC---CCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceE
Q 015490 193 VFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGN---RGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYV 269 (406)
Q Consensus 193 vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (406)
+.|..+.+......... ....++++++++.+.++.. ++++.+.|..+++.......... + ..+++.|++..
T Consensus 100 vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~-P-~~~a~~p~g~~--- 173 (381)
T COG3391 100 VIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNT-P-TGVAVDPDGNK--- 173 (381)
T ss_pred EEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCC-c-ceEEECCCCCe---
Confidence 99987777665554443 5678999999988877765 68899999998888887544332 2 68999999995
Q ss_pred EEEEEEcCCCcEEEEEeCCCceEEE-----EeeecCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCceEEEEe-ec
Q 015490 270 LYIAAITDRGASIVTWNTTTWKRIR-----TKQVVREPVSSFNVSADGKLLAVGTAS---GDISIIDSSSLQVRTAV-KK 340 (406)
Q Consensus 270 l~~~~~~~~~~~i~~~d~~~~~~~~-----~~~~~~~~i~~~~~sp~~~~l~~~~~d---g~i~i~d~~~~~~~~~~-~~ 340 (406)
+......++.|.+.|..+....+ ..... .....+.++|+|+++.+.... +.+...|..++...... ..
T Consensus 174 --vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~ 250 (381)
T COG3391 174 --VYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV 250 (381)
T ss_pred --EEEEecCCCeEEEEeCCCcceeccccccccccC-CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc
Confidence 33444678999999987765543 12222 234678999999977776554 58999999988777652 21
Q ss_pred ccccceEEEEEcCCCCeEEEEE-CCCcEEEEEecCCcCCCC
Q 015490 341 AHLGIVTALAFSYDSRALVSAS-MDSSVRVTVIEDKKKSGG 380 (406)
Q Consensus 341 ~~~~~v~~~~~sp~~~~l~s~s-~dg~i~iw~~~~~~~~~~ 380 (406)
+-. ....+..+|+|..+.+.. ..+.+.+-|..+.+....
T Consensus 251 ~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~ 290 (381)
T COG3391 251 GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKT 290 (381)
T ss_pred ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence 222 466789999999888774 447888888887665443
No 330
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.47 E-value=3e-05 Score=72.99 Aligned_cols=152 Identities=13% Similarity=0.030 Sum_probs=98.9
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCC----eEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCC-
Q 015490 166 NVGQQLALTFDSEGTIFAAGSENG----NLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLAS- 240 (406)
Q Consensus 166 ~~~~v~~~~~s~~g~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~- 240 (406)
-.+....+.++++|+++++.+.+. ++...+..+......+... .+ -++.++|++... .++.|.+.|.++
T Consensus 233 Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~--~i--ea~vkdGK~~~V--~gn~V~VID~~t~ 306 (635)
T PRK02888 233 VDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA--RI--EEAVKAGKFKTI--GGSKVPVVDGRKA 306 (635)
T ss_pred eCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH--HH--HHhhhCCCEEEE--CCCEEEEEECCcc
Confidence 344556789999999998876432 2333322221111111000 00 133457876665 366899999988
Q ss_pred ----CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceE------------EEEeeecCCCeE
Q 015490 241 ----SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR------------IRTKQVVREPVS 304 (406)
Q Consensus 241 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~------------~~~~~~~~~~i~ 304 (406)
.+....+... .....+.++|++++ +.+++..+..+.++|+.+.+. +.+.....++ .
T Consensus 307 ~~~~~~v~~yIPVG--KsPHGV~vSPDGky-----lyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP-L 378 (635)
T PRK02888 307 ANAGSALTRYVPVP--KNPHGVNTSPDGKY-----FIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP-L 378 (635)
T ss_pred ccCCcceEEEEECC--CCccceEECCCCCE-----EEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc-c
Confidence 3455555433 33568999999996 778888899999999988553 3444433343 5
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCC
Q 015490 305 SFNVSADGKLLAVGTASGDISIIDSSS 331 (406)
Q Consensus 305 ~~~~sp~~~~l~~~~~dg~i~i~d~~~ 331 (406)
..+|+++|+...+-.-|..|..||+.+
T Consensus 379 HTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 379 HTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eEEECCCCCEEEeEeecceeEEEehHH
Confidence 788999998777777899999999875
No 331
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=3.7e-05 Score=73.35 Aligned_cols=196 Identities=15% Similarity=0.162 Sum_probs=126.1
Q ss_pred EEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCc-eeEEEEccCCCEEEEEeCCC-----CEEEEEcCCC-----
Q 015490 173 LTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHAS-VKDLSFSPDGKFLVSLGNRG-----PGRVWDLASS----- 241 (406)
Q Consensus 173 ~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-i~~~~~s~~~~~l~s~s~d~-----~i~iwd~~~~----- 241 (406)
-+|++.+..++.|+.+|.|.+++ +..+....+..+... |..+....+..+|++.+.|+ .+++||++..
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred eEEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 35788889999999999998887 344444556555554 44444444446777777654 4899998643
Q ss_pred -eee---eecc--cC-CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC----ceEEEEeeecCCCeEEEEEcC
Q 015490 242 -AVA---TPLA--KE-NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT----WKRIRTKQVVREPVSSFNVSA 310 (406)
Q Consensus 242 -~~~---~~~~--~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~----~~~~~~~~~~~~~i~~~~~sp 310 (406)
.+. +.+. .+ ...++.+++.+.+-. .++.|-.+|.|..+.-+- +....-......+|+.+.+..
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~------~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~ 181 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLK------TIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS 181 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEcccc------EEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec
Confidence 222 1111 11 345677888888744 567778899999885321 122222223457999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490 311 DGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKK 376 (406)
Q Consensus 311 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~ 376 (406)
+++.++.......|.+|.+....+.......|...+.|-.+++....+++++ +..+.+|+....+
T Consensus 182 d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 182 DGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRG 246 (933)
T ss_pred CCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcc
Confidence 9987444445667999999854433442336777888988887655455544 3458888876544
No 332
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.44 E-value=0.0011 Score=61.29 Aligned_cols=73 Identities=19% Similarity=0.145 Sum_probs=62.4
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490 299 VREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED 374 (406)
Q Consensus 299 ~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~ 374 (406)
....+.+++++|+...++.|+.||+|.+||...+..... .+.-.++.++|+|+|..+++|+..|.+.+||+.-
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~---ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA---KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee---eecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 356899999999999999999999999999876644332 2455678999999999999999999999999863
No 333
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.42 E-value=9.9e-05 Score=63.19 Aligned_cols=177 Identities=16% Similarity=0.106 Sum_probs=111.6
Q ss_pred CCeEEEEeCCCcceEeeeeccCCceeEEE--EccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCC
Q 015490 188 NGNLRVFKWPSLEIILNESEAHASVKDLS--FSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNN 265 (406)
Q Consensus 188 dg~i~vwd~~~~~~~~~~~~~~~~i~~~~--~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (406)
+|+|..||..+|+.+....-... +.... ..+++..+++++.++.+..||..+|+.+-.......... .. ...++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~-~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPG-IGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISG-AP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSS-CSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGS-GE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCC-CCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccc-ee-eecccc
Confidence 68999999999998877654221 22222 233566788888999999999999998776654222111 11 222222
Q ss_pred CceEEEEEEEcCCCcEEEEEeCCCceEEEEe-eecC---CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecc
Q 015490 266 EDYVLYIAAITDRGASIVTWNTTTWKRIRTK-QVVR---EPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKA 341 (406)
Q Consensus 266 ~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~---~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 341 (406)
+++. ..++.++.+|..+++.+... .... .....+....++..++++..++.|..+|+++|+.+.... .
T Consensus 79 ----v~v~---~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~-~ 150 (238)
T PF13360_consen 79 ----VYVG---TSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYP-V 150 (238)
T ss_dssp ----EEEE---ETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEE-S
T ss_pred ----cccc---cceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEee-c
Confidence 2222 25669999999999988874 3221 112223333347888888889999999999999988775 2
Q ss_pred cccc----------eEEEEEcCCCCeEEEEECCCc-EEEEEecCCcC
Q 015490 342 HLGI----------VTALAFSYDSRALVSASMDSS-VRVTVIEDKKK 377 (406)
Q Consensus 342 ~~~~----------v~~~~~sp~~~~l~s~s~dg~-i~iw~~~~~~~ 377 (406)
.... +..-....++ .++.++.++. +.+ |+.+++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~ 195 (238)
T PF13360_consen 151 GEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEK 195 (238)
T ss_dssp STT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEE
T ss_pred CCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCE
Confidence 3211 1122222244 6667777775 555 8888873
No 334
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=8e-05 Score=71.12 Aligned_cols=204 Identities=9% Similarity=0.064 Sum_probs=124.9
Q ss_pred EEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-Cc-EEEEEECCCCCEEEEeeCCC-----eE
Q 015490 120 AIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQ-QLALTFDSEGTIFAAGSENG-----NL 191 (406)
Q Consensus 120 ~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-v~~~~~s~~g~~l~~~~~dg-----~i 191 (406)
+|++.+..++.|. +| +||.++.. .+.++.+... .. |..+-...+..+|++.+.|+ .+
T Consensus 30 c~~s~~~~vvigt~~G--~V~~Ln~s-------------~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~ll 94 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADG--RVVILNSS-------------FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLL 94 (933)
T ss_pred EEcCCCceEEEeeccc--cEEEeccc-------------ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEE
Confidence 4567777777775 55 45555531 1221222222 22 23332233335777766654 59
Q ss_pred EEEeCCCc------ceE--eeeec---c--CCceeEEEEccCCCEEEEEeCCCCEEEEEc---CCCeeeeecccCCcceE
Q 015490 192 RVFKWPSL------EII--LNESE---A--HASVKDLSFSPDGKFLVSLGNRGPGRVWDL---ASSAVATPLAKENDELF 255 (406)
Q Consensus 192 ~vwd~~~~------~~~--~~~~~---~--~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~---~~~~~~~~~~~~~~~~~ 255 (406)
+||+++.- .+. ..+.. . ..++.+++.+.+-+.+|+|-.+|.|..+.- +.......+......+|
T Consensus 95 kiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pI 174 (933)
T KOG2114|consen 95 KIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPI 174 (933)
T ss_pred EEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCc
Confidence 99998532 222 11222 1 337889999999889999999999988842 22222333444556789
Q ss_pred EEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceE-EEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceE
Q 015490 256 ASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR-IRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQV 334 (406)
Q Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~ 334 (406)
+.+.+..++.. .+|++. ...|.+|.+....+ ...+..++..+.|-.+++....+++++ +..+.+|+.+..++
T Consensus 175 TgL~~~~d~~s--~lFv~T----t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~ 247 (933)
T KOG2114|consen 175 TGLALRSDGKS--VLFVAT----TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGP 247 (933)
T ss_pred eeeEEecCCce--eEEEEe----cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcce
Confidence 99999999885 333332 45688888874442 444677778888999987655455554 44599999987777
Q ss_pred EEEeecccccc
Q 015490 335 RTAVKKAHLGI 345 (406)
Q Consensus 335 ~~~~~~~~~~~ 345 (406)
-..+..+|...
T Consensus 248 cfaf~~g~kk~ 258 (933)
T KOG2114|consen 248 CFAFEVGEKKE 258 (933)
T ss_pred eeeecCCCeEE
Confidence 77765456544
No 335
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.32 E-value=1.8e-05 Score=75.77 Aligned_cols=183 Identities=13% Similarity=0.137 Sum_probs=129.7
Q ss_pred CCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEE
Q 015490 178 EGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFAS 257 (406)
Q Consensus 178 ~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 257 (406)
++..++.|+....+..+|+++.+......-..+.|.-+.. +++.+.+|...|+|.+-|.++.+.++++..|.+. +
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s-i-- 220 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS-I-- 220 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccc-e--
Confidence 3456777777788889999888776655444434555554 5788999999999999999999999999877553 3
Q ss_pred EEEEcCCCCceEEEEEEEc--------CCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCC-CCEEEEEeCCCcEEEEE
Q 015490 258 CRFSPLNNEDYVLYIAAIT--------DRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSAD-GKLLAVGTASGDISIID 328 (406)
Q Consensus 258 ~~~~~~~~~~~~l~~~~~~--------~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~-~~~l~~~~~dg~i~i~d 328 (406)
..|+-.|+. +++.| .-|.-|+|||++..+.+.-+..+.++ .-+.|+|. ...+++++..|...+.|
T Consensus 221 SDfDv~GNl-----LitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd 294 (1118)
T KOG1275|consen 221 SDFDVQGNL-----LITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVD 294 (1118)
T ss_pred eeeeccCCe-----EEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeecc
Confidence 344555542 11211 12567899999998877666655443 55778884 34678888899999999
Q ss_pred CC---CceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEE
Q 015490 329 SS---SLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTV 371 (406)
Q Consensus 329 ~~---~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~ 371 (406)
.. +...-..........+..+.+|++|..|+.|..+|.|.+|.
T Consensus 295 ~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 295 TATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 43 32111111112334489999999999999999999999998
No 336
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.29 E-value=0.00098 Score=60.95 Aligned_cols=253 Identities=19% Similarity=0.183 Sum_probs=134.6
Q ss_pred CceEEEEccCCCeEEEEe-cCCeEEEEEecccccc----eee-------------------ccee--c----cceeeecc
Q 015490 115 LPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTE----IRR-------------------LGVK--I----SEKVLSQL 164 (406)
Q Consensus 115 ~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~----~~~-------------------~~~~--~----~~~~~~~~ 164 (406)
.|+.+.|+++...|+++. .|.+-||.|..+.... ... +..+ + .-.+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 478999999988888887 9999999998764322 000 0000 0 01111111
Q ss_pred c-ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeee--c------cCCceeEEEEcc-----CC---CEEEEE
Q 015490 165 E-NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNES--E------AHASVKDLSFSP-----DG---KFLVSL 227 (406)
Q Consensus 165 ~-~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~--~------~~~~i~~~~~s~-----~~---~~l~s~ 227 (406)
+ ..++|++++.| |=.++|.|..+|.+.|.|++....+..-. . ....|+++.|+. |+ -.+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 1 24789999998 44599999999999999998776655421 1 112678888852 33 368888
Q ss_pred eCCCCEEEEEcC--C-Ceeeeecc---cCCcceEEEE-EEEcCCCCc-----------------eEEEEEEEcCCCcEEE
Q 015490 228 GNRGPGRVWDLA--S-SAVATPLA---KENDELFASC-RFSPLNNED-----------------YVLYIAAITDRGASIV 283 (406)
Q Consensus 228 s~d~~i~iwd~~--~-~~~~~~~~---~~~~~~~~~~-~~~~~~~~~-----------------~~l~~~~~~~~~~~i~ 283 (406)
...|.+.+|.+. . +.....+. ..+...+..+ .++.+.... ..+ ++++ ....++
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~-vVvv--Se~~ir 238 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGY-VVVV--SESDIR 238 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EE-EEEE---SSEEE
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcE-EEEE--cccceE
Confidence 999999999764 1 21111111 1122333333 243322110 112 2222 367899
Q ss_pred EEeCCCceEEEEeeecCCCeEEEEEc-----CCCCEEEEEeCCCcEEEEECCCceEEEEeecc---cccceEEEEEcCCC
Q 015490 284 TWNTTTWKRIRTKQVVREPVSSFNVS-----ADGKLLAVGTASGDISIIDSSSLQVRTAVKKA---HLGIVTALAFSYDS 355 (406)
Q Consensus 284 ~~d~~~~~~~~~~~~~~~~i~~~~~s-----p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~sp~~ 355 (406)
++...+.+..............+++- ..+..|++-..+|.+++|.+...+.+..+... ....+....++++|
T Consensus 239 v~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~G 318 (395)
T PF08596_consen 239 VFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNG 318 (395)
T ss_dssp EE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS
T ss_pred EEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCC
Confidence 99988777655444221223334442 35667888889999999999998888777521 22335567788999
Q ss_pred CeEEEEECCCcEEEEEe
Q 015490 356 RALVSASMDSSVRVTVI 372 (406)
Q Consensus 356 ~~l~s~s~dg~i~iw~~ 372 (406)
..++-.+. ..+.++.+
T Consensus 319 di~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 319 DIFYWTGP-SEIQLFSV 334 (395)
T ss_dssp -EEEE-SS-SEEEEEEE
T ss_pred CEEEEeCc-ccEEEEEE
Confidence 87765543 34444444
No 337
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.29 E-value=0.0012 Score=57.89 Aligned_cols=206 Identities=16% Similarity=0.205 Sum_probs=120.6
Q ss_pred ceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEE
Q 015490 116 PYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVF 194 (406)
Q Consensus 116 v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vw 194 (406)
...++++.|++++++.. .-.-.|-.+|... .+.+..+...+...-.-..+ +-|.+-|.||.+.-.
T Consensus 97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~------------~kvv~ei~~PGC~~iyP~~~--~~F~~lC~DGsl~~v 162 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQNFTPATSVTVVDLAA------------KKVVGEIDTPGCWLIYPSGN--RGFSMLCGDGSLLTV 162 (342)
T ss_dssp GGGEEE-TTSSEEEEEEESSSEEEEEEETTT------------TEEEEEEEGTSEEEEEEEET--TEEEEEETTSCEEEE
T ss_pred ccceEEccCCcEEEEEccCCCCeEEEEECCC------------CceeeeecCCCEEEEEecCC--CceEEEecCCceEEE
Confidence 34568888999888765 3333344455543 33333333343322222222 347777889999888
Q ss_pred eCC-CcceEeeee----ccCC-ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee--ecccC------Cc---ceEEE
Q 015490 195 KWP-SLEIILNES----EAHA-SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT--PLAKE------ND---ELFAS 257 (406)
Q Consensus 195 d~~-~~~~~~~~~----~~~~-~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~--~~~~~------~~---~~~~~ 257 (406)
.+. .|+...... .... .+..-++...+..++..+.+|.|+--|+....... .+... .+ ....-
T Consensus 163 ~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~ 242 (342)
T PF06433_consen 163 TLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQL 242 (342)
T ss_dssp EETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-
T ss_pred EECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceee
Confidence 886 555432221 1112 23344555666677778999999999887654221 11110 00 01224
Q ss_pred EEEEcCCCCceEEEEEEEcCCC-------cEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCC-EEEEEe-CCCcEEEEE
Q 015490 258 CRFSPLNNEDYVLYIAAITDRG-------ASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGK-LLAVGT-ASGDISIID 328 (406)
Q Consensus 258 ~~~~~~~~~~~~l~~~~~~~~~-------~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~-~l~~~~-~dg~i~i~d 328 (406)
+++++..+. +|++.-.+.+ ..|.++|+.+++.+.++... .++.++..+.+.+ +|++.+ .++.+.+||
T Consensus 243 ~A~~~~~~r---lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 243 IAYHAASGR---LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp EEEETTTTE---EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred eeeccccCe---EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 677776664 4444433222 36999999999999998864 4577999998776 554443 578999999
Q ss_pred CCCceEEEEee
Q 015490 329 SSSLQVRTAVK 339 (406)
Q Consensus 329 ~~~~~~~~~~~ 339 (406)
..+++.++.+.
T Consensus 319 ~~tGk~~~~~~ 329 (342)
T PF06433_consen 319 AATGKLVRSIE 329 (342)
T ss_dssp TTT--EEEEE-
T ss_pred CcCCcEEeehh
Confidence 99999999886
No 338
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=0.00091 Score=61.44 Aligned_cols=208 Identities=18% Similarity=0.229 Sum_probs=141.3
Q ss_pred CCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC---C
Q 015490 114 DLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE---N 188 (406)
Q Consensus 114 ~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---d 188 (406)
.....++.++.+..+++.. ++.+.+ ++......... ..-......++++++++.+.++.. +
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~v--id~~~~~~~~~------------~~vG~~P~~~~~~~~~~~vYV~n~~~~~ 139 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSV--IDTATNTVLGS------------IPVGLGPVGLAVDPDGKYVYVANAGNGN 139 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEE--EcCcccceeeE------------eeeccCCceEEECCCCCEEEEEecccCC
Confidence 4456788999998777665 455555 44332222211 111225567999999987777655 6
Q ss_pred CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEe-CCCCEEEEEcCCCeeee-ec--ccCCcceEEEEEEEcCC
Q 015490 189 GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLG-NRGPGRVWDLASSAVAT-PL--AKENDELFASCRFSPLN 264 (406)
Q Consensus 189 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s-~d~~i~iwd~~~~~~~~-~~--~~~~~~~~~~~~~~~~~ 264 (406)
+++.+.|-.+++..........+ ..++++|+|+.++.+. .++.+.+.|........ .- ..........+.+++++
T Consensus 140 ~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g 218 (381)
T COG3391 140 NTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDG 218 (381)
T ss_pred ceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCC
Confidence 89999998888887775544445 8999999999777665 68899999976655443 10 01112223468899999
Q ss_pred CCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCC-CeEEEEEcCCCCEEEEEeC-CCcEEEEECCCceEEEEee
Q 015490 265 NEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVRE-PVSSFNVSADGKLLAVGTA-SGDISIIDSSSLQVRTAVK 339 (406)
Q Consensus 265 ~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~ 339 (406)
.+ +|+....+.++.+...|..++........... ....+..+|+|+++.+... .+.+.+.|..+........
T Consensus 219 ~~---~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 219 NR---VYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred CE---EEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 85 45555444458999999998776665222212 4567899999999988855 4889999998877776654
No 339
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.25 E-value=0.00056 Score=63.95 Aligned_cols=196 Identities=15% Similarity=0.157 Sum_probs=112.7
Q ss_pred EEEEEECCCCCEEEEe-eCC----CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCC-----------CE
Q 015490 170 QLALTFDSEGTIFAAG-SEN----GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRG-----------PG 233 (406)
Q Consensus 170 v~~~~~s~~g~~l~~~-~~d----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~-----------~i 233 (406)
+....+||||+++|.+ +.. ..++++|+++++.+....... ....+.|.+|++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 3467899999998876 333 369999999997765332221 223499999999877765433 37
Q ss_pred EEEEcCCCeee--eecccCCcce-EEEEEEEcCCCCceEEEEEEEcCCC-cEEEEEeCCCc----eEEEEeeecCCCe-E
Q 015490 234 RVWDLASSAVA--TPLAKENDEL-FASCRFSPLNNEDYVLYIAAITDRG-ASIVTWNTTTW----KRIRTKQVVREPV-S 304 (406)
Q Consensus 234 ~iwd~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~-~~i~~~d~~~~----~~~~~~~~~~~~i-~ 304 (406)
+.|.+.+.... ..+....... ...+..+++++. +++......+ ..+++.|+... .....+......+ .
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~---l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~ 281 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRY---LFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY 281 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSE---EEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccE---EEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence 77887765432 3333333333 567888999884 5555555666 78999999874 2333333333333 3
Q ss_pred EEEEcCCCCEEEEEeC---CCcEEEEECCCceE---EEEeeccccc--ceEEEEEcCCCCeEE-EEECCC--cEEEEEec
Q 015490 305 SFNVSADGKLLAVGTA---SGDISIIDSSSLQV---RTAVKKAHLG--IVTALAFSYDSRALV-SASMDS--SVRVTVIE 373 (406)
Q Consensus 305 ~~~~sp~~~~l~~~~~---dg~i~i~d~~~~~~---~~~~~~~~~~--~v~~~~~sp~~~~l~-s~s~dg--~i~iw~~~ 373 (406)
.+... .+.+++.... .+.|.-.++.+... ...+. .|.. .+..+... +.+|+ ....++ .|+++++.
T Consensus 282 ~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~-~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 282 YVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI-PEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEETT
T ss_pred EEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEc-CCCCceeEEEEEEE--CCEEEEEEEECCccEEEEEECC
Confidence 34333 4444443332 46677788876552 22332 3444 35555543 44444 444454 57888887
No 340
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.24 E-value=0.00039 Score=63.34 Aligned_cols=225 Identities=16% Similarity=0.123 Sum_probs=119.4
Q ss_pred ccCCCeEEEEec--------CCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEE
Q 015490 122 HPHGDGIICALQ--------NSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRV 193 (406)
Q Consensus 122 sp~~~~l~~~~~--------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~v 193 (406)
|||+++++...+ ....+|.++..+++.... ......+....|||+|+.++... ++.|.+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l------------~~~~~~~~~~~~sP~g~~~~~v~-~~nly~ 67 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPL------------TPPPPKLQDAKWSPDGKYIAFVR-DNNLYL 67 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEES------------S-EETTBSEEEE-SSSTEEEEEE-TTEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEEC------------cCCccccccceeecCCCeeEEEe-cCceEE
Confidence 688888877431 223556666554321111 11145677889999999998875 579999
Q ss_pred EeCCCcceEeeeeccC-----------------CceeEEEEccCCCEEEEEeC-CCCEEEEEcCCCeeeeecccC-Ccce
Q 015490 194 FKWPSLEIILNESEAH-----------------ASVKDLSFSPDGKFLVSLGN-RGPGRVWDLASSAVATPLAKE-NDEL 254 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~-----------------~~i~~~~~s~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~~-~~~~ 254 (406)
++..++...+...... +.-..+-||||+++|+.... +..+..+.+... .... .-..
T Consensus 68 ~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~-----~~~~~~yp~ 142 (353)
T PF00930_consen 68 RDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDY-----SPPDSQYPE 142 (353)
T ss_dssp ESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEE-----SSSTESS-E
T ss_pred EECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeecc-----CCccccCCc
Confidence 9987775443322221 12356889999999998754 344444433110 0000 0112
Q ss_pred EEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEe-e----ecCCCeEEEEEcCCCCEEEEEeC--C---CcE
Q 015490 255 FASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTK-Q----VVREPVSSFNVSADGKLLAVGTA--S---GDI 324 (406)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~-~----~~~~~i~~~~~sp~~~~l~~~~~--d---g~i 324 (406)
+..+.+-.-|.. ...-.+.++|+.+++....- . .....+..+.|.++++.|++.-. + ..+
T Consensus 143 ~~~~~YPk~G~~----------np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l 212 (353)
T PF00930_consen 143 VESIRYPKAGDP----------NPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDL 212 (353)
T ss_dssp EEEEE--BTTS-------------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEE
T ss_pred ccccccCCCCCc----------CCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEE
Confidence 334444333332 11235677888877653211 1 23456889999999984444322 2 237
Q ss_pred EEEECCCceEEEEeecccccce---EEEEEc-CCCC-eEEEEECCCcEEEEEecC
Q 015490 325 SIIDSSSLQVRTAVKKAHLGIV---TALAFS-YDSR-ALVSASMDSSVRVTVIED 374 (406)
Q Consensus 325 ~i~d~~~~~~~~~~~~~~~~~v---~~~~~s-p~~~-~l~s~s~dg~i~iw~~~~ 374 (406)
.++|..++...........+.| ....|. +++. +|.....||.-+|+-++.
T Consensus 213 ~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~ 267 (353)
T PF00930_consen 213 VLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDL 267 (353)
T ss_dssp EEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEET
T ss_pred EEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcc
Confidence 7788877655433332334443 255554 5554 444555777666665543
No 341
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.23 E-value=0.001 Score=58.55 Aligned_cols=222 Identities=16% Similarity=0.136 Sum_probs=127.6
Q ss_pred EEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCC
Q 015490 118 RMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWP 197 (406)
Q Consensus 118 ~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~ 197 (406)
+-.|.++...|+-+.=..-+|+.|+..+++ ...+...+.+.++..-..+..|+++. .-+.+++.+
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~-------------~~~~~~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~ 93 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGK-------------KRVFPSPGGFSSGALIDAGGRLIACE--HGVRLLDPD 93 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCc-------------eEEEECCCCcccceeecCCCeEEEEc--cccEEEecc
Confidence 346778888777666333478888765332 12223344444444444444454443 236677766
Q ss_pred CcceEeeeeccC-----CceeEEEEccCCCEEEEEeC-----C----CCEEEEEcC-CCeeeeecccCCcceEEEEEEEc
Q 015490 198 SLEIILNESEAH-----ASVKDLSFSPDGKFLVSLGN-----R----GPGRVWDLA-SSAVATPLAKENDELFASCRFSP 262 (406)
Q Consensus 198 ~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~s~s~-----d----~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~ 262 (406)
++.....+.... ...+++...|+|.+-++... . ..-.+|-+. .+...+.+.. +-...+.++|||
T Consensus 94 ~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~-~~~~~NGla~Sp 172 (307)
T COG3386 94 TGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDD-DLTIPNGLAFSP 172 (307)
T ss_pred CCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecC-cEEecCceEECC
Confidence 665532222211 15678889999986665433 0 112445444 3444444332 233456899999
Q ss_pred CCCCceEEEEEEEcCCCcEEEEEeCCC--ce-----EEEEeeecCCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCceE
Q 015490 263 LNNEDYVLYIAAITDRGASIVTWNTTT--WK-----RIRTKQVVREPVSSFNVSADGKLLAVGTASG-DISIIDSSSLQV 334 (406)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~i~~~d~~~--~~-----~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg-~i~i~d~~~~~~ 334 (406)
+++. +| .+-+..+.|+-|++.. +. ....+....+..-.++...+|++.+++..+| .|.+|+.+ ++.
T Consensus 173 Dg~t---ly--~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l 246 (307)
T COG3386 173 DGKT---LY--VADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKL 246 (307)
T ss_pred CCCE---EE--EEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcE
Confidence 9985 33 4445567888887652 11 1122222345556788888898876555554 89999988 888
Q ss_pred EEEeecccccceEEEEEcC-CCCeEEEEE
Q 015490 335 RTAVKKAHLGIVTALAFSY-DSRALVSAS 362 (406)
Q Consensus 335 ~~~~~~~~~~~v~~~~~sp-~~~~l~s~s 362 (406)
+..+. .+...+++++|-- +.+.|...+
T Consensus 247 ~~~i~-lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 247 LGEIK-LPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEEEE-CCCCCCccceEeCCCcCEEEEEe
Confidence 88886 4546788888854 445554333
No 342
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.23 E-value=0.0023 Score=54.42 Aligned_cols=196 Identities=13% Similarity=0.218 Sum_probs=108.5
Q ss_pred CcEEEEEECCCC-CEEEEeeCCCeEEEEeCCCcceEeeeecc-CCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCe---
Q 015490 168 GQQLALTFDSEG-TIFAAGSENGNLRVFKWPSLEIILNESEA-HASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSA--- 242 (406)
Q Consensus 168 ~~v~~~~~s~~g-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~--- 242 (406)
..+..++|+|+. .++++....+.|..++. +|+.+..+.-. .+..-.|++..++.++++.-.++.+.++++....
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence 468999999975 57777788889988886 47777666433 3467889998888777766678899999884321
Q ss_pred ---eeeec--cc--CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeC--CCceE-EEEe------eecCCCeEEE
Q 015490 243 ---VATPL--AK--ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNT--TTWKR-IRTK------QVVREPVSSF 306 (406)
Q Consensus 243 ---~~~~~--~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~--~~~~~-~~~~------~~~~~~i~~~ 306 (406)
....+ .. ..+..+..++|.+.++. + +++--..-..|+-++. ..... .... ......+.++
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~---L-~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l 176 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNR---L-FVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGL 176 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEETTTTE---E-EEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EE
T ss_pred chhhceEEecccccCCCcceEEEEEcCCCCE---E-EEEeCCCChhhEEEccccCccceeeccccccccccceeccccce
Confidence 11112 11 23445889999999885 3 3343333334555554 11111 1111 1122457899
Q ss_pred EEcCC-CCEEEEEeCCCcEEEEECCCceEEEEee--cccc------cceEEEEEcCCCCeEEEEECCCcEEEE
Q 015490 307 NVSAD-GKLLAVGTASGDISIIDSSSLQVRTAVK--KAHL------GIVTALAFSYDSRALVSASMDSSVRVT 370 (406)
Q Consensus 307 ~~sp~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~------~~v~~~~~sp~~~~l~s~s~dg~i~iw 370 (406)
+++|. +.+++....+..|..+| .+|+.+..+. .+.. ...-.|+|.++|++.++ +.-+..+++
T Consensus 177 ~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 177 SYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred EEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 99995 45666666688899999 5677666553 1111 23568999999975554 566655554
No 343
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.23 E-value=0.0005 Score=66.23 Aligned_cols=190 Identities=11% Similarity=0.055 Sum_probs=107.8
Q ss_pred cCCCCceEEEEccCCCeEEEEe-------cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEE
Q 015490 111 TDSDLPYRMAIHPHGDGIICAL-------QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFA 183 (406)
Q Consensus 111 ~h~~~v~~~~~sp~~~~l~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 183 (406)
+....+.+.+++|+|+.+++.. +..-.||..+... .. .. + ..+ .....-.|+|||+.++
T Consensus 347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~---------l--t~g-~~~t~PsWspDG~~lw 412 (591)
T PRK13616 347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQ---------V--LEG-HSLTRPSWSLDADAVW 412 (591)
T ss_pred ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-ee---------e--ecC-CCCCCceECCCCCceE
Confidence 3335678999999999988764 4456888877421 11 11 1 112 2367789999988777
Q ss_pred EeeCC------------CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEE---EEcCCCee-e---
Q 015490 184 AGSEN------------GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRV---WDLASSAV-A--- 244 (406)
Q Consensus 184 ~~~~d------------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~i---wd~~~~~~-~--- 244 (406)
+.... +.+.+.+++.++... .....|..+.|||||.+++... ++.|++ -....|.. +
T Consensus 413 ~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~ 488 (591)
T PRK13616 413 VVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNP 488 (591)
T ss_pred EEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeeccc
Confidence 76432 233333444333322 2234799999999999988876 467766 34334431 1
Q ss_pred eecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeee--cCCCeEEEEEcCCCCEEEEEeCCC
Q 015490 245 TPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV--VREPVSSFNVSADGKLLAVGTASG 322 (406)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~i~~~~~sp~~~~l~~~~~dg 322 (406)
..+.......+..+.|..++. |+ +...+.+..++..++...... .+.. ...++.+++-+++ .++....++
T Consensus 489 ~~l~~~l~~~~~~l~W~~~~~----L~-V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~~--~iyv~~~~g 560 (591)
T PRK13616 489 REVGPGLGDTAVSLDWRTGDS----LV-VGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASPS--TVYVTDARA 560 (591)
T ss_pred EEeecccCCccccceEecCCE----EE-EEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCCc--eEEEEcCCc
Confidence 112222233346789999886 22 334445555666666533221 1122 1355667776653 455556666
Q ss_pred cEEE
Q 015490 323 DISI 326 (406)
Q Consensus 323 ~i~i 326 (406)
.+.+
T Consensus 561 ~~~l 564 (591)
T PRK13616 561 VLQL 564 (591)
T ss_pred eEEe
Confidence 4433
No 344
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.23 E-value=0.0031 Score=60.06 Aligned_cols=239 Identities=13% Similarity=0.105 Sum_probs=134.3
Q ss_pred CeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEee---------CCCeEEEEeC
Q 015490 126 DGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGS---------ENGNLRVFKW 196 (406)
Q Consensus 126 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---------~dg~i~vwd~ 196 (406)
..++++. ....|+-+|..+++...+......... ...... ...+ .+..++.++ .+|.+..+|.
T Consensus 111 ~~V~v~~-~~g~v~AlD~~TG~~~W~~~~~~~~~~--~~~i~s---sP~v--~~~~v~vg~~~~~~~~~~~~g~v~alD~ 182 (488)
T cd00216 111 RKVFFGT-FDGRLVALDAETGKQVWKFGNNDQVPP--GYTMTG---APTI--VKKLVIIGSSGAEFFACGVRGALRAYDV 182 (488)
T ss_pred CeEEEec-CCCeEEEEECCCCCEeeeecCCCCcCc--ceEecC---CCEE--ECCEEEEeccccccccCCCCcEEEEEEC
Confidence 4455543 233667778877777766544211000 000000 0111 123444443 4688999999
Q ss_pred CCcceEeeeeccCC--------------------ce-eEEEEccCCCEEEEEeCCC------------------CEEEEE
Q 015490 197 PSLEIILNESEAHA--------------------SV-KDLSFSPDGKFLVSLGNRG------------------PGRVWD 237 (406)
Q Consensus 197 ~~~~~~~~~~~~~~--------------------~i-~~~~~s~~~~~l~s~s~d~------------------~i~iwd 237 (406)
.+|+.+........ .+ ...++.+.+..++.++.++ .+.-+|
T Consensus 183 ~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald 262 (488)
T cd00216 183 ETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALD 262 (488)
T ss_pred CCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEc
Confidence 99988766543211 01 1234444566777777654 688899
Q ss_pred cCCCeeeeecccCCcc-----eEEEEEEE----cCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEE
Q 015490 238 LASSAVATPLAKENDE-----LFASCRFS----PLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNV 308 (406)
Q Consensus 238 ~~~~~~~~~~~~~~~~-----~~~~~~~~----~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 308 (406)
..+|+..-.+...... ......+. -++.. ..++..+..+|.++.+|.++++.+-...... ..+..
T Consensus 263 ~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~---~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~ 336 (488)
T cd00216 263 ADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP---VPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAY 336 (488)
T ss_pred CCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe---eEEEEEECCCceEEEEECCCCcEeeEeEeec---ccccc
Confidence 9999887665432111 00001111 12221 1234455678999999999999877665321 22344
Q ss_pred cCCCCEEEEE------------------eCCCcEEEEECCCceEEEEeecc-cc------cce--EEEEEcCCCCeEEEE
Q 015490 309 SADGKLLAVG------------------TASGDISIIDSSSLQVRTAVKKA-HL------GIV--TALAFSYDSRALVSA 361 (406)
Q Consensus 309 sp~~~~l~~~------------------~~dg~i~i~d~~~~~~~~~~~~~-~~------~~v--~~~~~sp~~~~l~s~ 361 (406)
+| ..++.+ ..+|.+.-+|+.+++.+-+.... +. .+. ..+.. .+..|+.+
T Consensus 337 ~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g 412 (488)
T cd00216 337 DP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAG 412 (488)
T ss_pred CC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEE
Confidence 44 333332 23678899999999887766422 00 111 11222 45678888
Q ss_pred ECCCcEEEEEecCCcCCCCch
Q 015490 362 SMDSSVRVTVIEDKKKSGGLN 382 (406)
Q Consensus 362 s~dg~i~iw~~~~~~~~~~~~ 382 (406)
+.||.|+.+|.++++.+-+++
T Consensus 413 ~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 413 AADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred CCCCeEEEEECCCCceeeEEE
Confidence 999999999999998865544
No 345
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.22 E-value=0.0041 Score=58.14 Aligned_cols=244 Identities=17% Similarity=0.142 Sum_probs=129.3
Q ss_pred eEEEEccCCCeEEEEe--cC--CeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCC----
Q 015490 117 YRMAIHPHGDGIICAL--QN--SCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSEN---- 188 (406)
Q Consensus 117 ~~~~~sp~~~~l~~~~--~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d---- 188 (406)
....++|+|++++.+- +| ...++.++..+++.+.. .+... ....+.|.+|++.|+....+
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-----------~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~ 194 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-----------GIENP-KFSSVSWSDDGKGFFYTRFDEDQR 194 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-----------EEEEE-ESEEEEECTTSSEEEEEECSTTTS
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-----------ccccc-ccceEEEeCCCCEEEEEEeCcccc
Confidence 4678999999998763 33 35677777766533221 01111 11239999998877665432
Q ss_pred -------CeEEEEeCCCcceE--eeeeccCC-c-eeEEEEccCCCEEEEEeC---C-CCEEEEEcCCC----eeeeeccc
Q 015490 189 -------GNLRVFKWPSLEII--LNESEAHA-S-VKDLSFSPDGKFLVSLGN---R-GPGRVWDLASS----AVATPLAK 249 (406)
Q Consensus 189 -------g~i~vwd~~~~~~~--~~~~~~~~-~-i~~~~~s~~~~~l~s~s~---d-~~i~iwd~~~~----~~~~~~~~ 249 (406)
..|+.|.+.+.... ..+..... . ...+..++|+++|+..+. + ..+.+.|+..+ .....+..
T Consensus 195 ~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~ 274 (414)
T PF02897_consen 195 TSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP 274 (414)
T ss_dssp S-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE
T ss_pred cccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC
Confidence 24788888765432 23333333 2 568889999998775432 2 34777788764 22333332
Q ss_pred CCcceEEEEEEEcCCCCceEEEEEE-EcCCCcEEEEEeCCCceE---EEEeeecCCCeEEEEEcCCCCEEEEEeC-CC--
Q 015490 250 ENDELFASCRFSPLNNEDYVLYIAA-ITDRGASIVTWNTTTWKR---IRTKQVVREPVSSFNVSADGKLLAVGTA-SG-- 322 (406)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~d~~~~~~---~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg-- 322 (406)
........+... +.. +++.. -...++.|...++..... ...+..+...+.--.+...+++|+.... ++
T Consensus 275 ~~~~~~~~v~~~--~~~---~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~ 349 (414)
T PF02897_consen 275 REDGVEYYVDHH--GDR---LYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSS 349 (414)
T ss_dssp SSSS-EEEEEEE--TTE---EEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEE
T ss_pred CCCceEEEEEcc--CCE---EEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCcc
Confidence 223323333333 332 33333 234467888888876652 2244444443333333344555555444 43
Q ss_pred cEEEEECCCceEEEEeecccccceEEEEEcCCCCeE-EEEE---CCCcEEEEEecCCcC
Q 015490 323 DISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRAL-VSAS---MDSSVRVTVIEDKKK 377 (406)
Q Consensus 323 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~s~s---~dg~i~iw~~~~~~~ 377 (406)
.|+++++..+.....+.....+.|..+...+++..+ ++.+ .-+++..||+.+++.
T Consensus 350 ~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 350 RLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 488999984444444432344556666655655443 3322 235788888888764
No 346
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.22 E-value=0.0036 Score=55.89 Aligned_cols=279 Identities=16% Similarity=0.144 Sum_probs=133.7
Q ss_pred CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCC-CCceEEEEccCCCeEEEEecCCeEEEEEecccc
Q 015490 68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDS-DLPYRMAIHPHGDGIICALQNSCRLFEWDEVEN 146 (406)
Q Consensus 68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~ 146 (406)
+++.+++++.- .+.-.++.++.++ ..+.+|..+. .......++|+.+.++...++. .|+.++..+.
T Consensus 46 dG~kllF~s~~-------dg~~nly~lDL~t-----~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~-~l~~vdL~T~ 112 (386)
T PF14583_consen 46 DGRKLLFASDF-------DGNRNLYLLDLAT-----GEITQLTDGPGDNTFGGFLSPDDRALYYVKNGR-SLRRVDLDTL 112 (386)
T ss_dssp TS-EEEEEE-T-------TSS-EEEEEETTT------EEEE---SS-B-TTT-EE-TTSSEEEEEETTT-EEEEEETTT-
T ss_pred CCCEEEEEecc-------CCCcceEEEEccc-----CEEEECccCCCCCccceEEecCCCeEEEEECCC-eEEEEECCcC
Confidence 45566665431 2344778888877 4555565544 2344677789888887664443 6777887765
Q ss_pred cceeecceeccceeeecccccCcEEEEEE--CCCCCEEEEee----------------------CCCeEEEEeCCCcceE
Q 015490 147 TEIRRLGVKISEKVLSQLENVGQQLALTF--DSEGTIFAAGS----------------------ENGNLRVFKWPSLEII 202 (406)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~g~~l~~~~----------------------~dg~i~vwd~~~~~~~ 202 (406)
++...+.++ ...+-...| +.|+..++-.- -...|.-.|+.+|+..
T Consensus 113 e~~~vy~~p-----------~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~ 181 (386)
T PF14583_consen 113 EERVVYEVP-----------DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERK 181 (386)
T ss_dssp -EEEEEE-------------TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EE
T ss_pred cEEEEEECC-----------cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCcee
Confidence 543333221 122222333 33455443221 1234666677777654
Q ss_pred eeeeccCCceeEEEEccCCC-EEEEEeC---CC-CEEEEEcCC-Ceeeeec-ccCCcceEEEEEEEcCCCCceEEEEEEE
Q 015490 203 LNESEAHASVKDLSFSPDGK-FLVSLGN---RG-PGRVWDLAS-SAVATPL-AKENDELFASCRFSPLNNEDYVLYIAAI 275 (406)
Q Consensus 203 ~~~~~~~~~i~~~~~s~~~~-~l~s~s~---d~-~i~iwd~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (406)
. +......+..+.|+|... .|+.|-+ +. .-+||-+++ +.....+ .......+..=-|.|+|.. +.|..-.
T Consensus 182 ~-v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~--i~y~~~~ 258 (386)
T PF14583_consen 182 V-VFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGST--IWYDSYT 258 (386)
T ss_dssp E-EEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS---EEEEEEE
T ss_pred E-EEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCE--EEEEeec
Confidence 3 334455788999999554 5555532 22 135665543 2222222 2233455666789999986 4444332
Q ss_pred -cCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCC----------------cEEEEECCCceEEEEe
Q 015490 276 -TDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASG----------------DISIIDSSSLQVRTAV 338 (406)
Q Consensus 276 -~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg----------------~i~i~d~~~~~~~~~~ 338 (406)
++.+..|.-+|+.+++....... .....+-.++||++++-=+.|. .|+++++..+......
T Consensus 259 ~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~ 336 (386)
T PF14583_consen 259 PGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLA 336 (386)
T ss_dssp TTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEE
T ss_pred CCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeee
Confidence 34466888899998765433332 2345666688998876533331 4667888776654322
Q ss_pred e--------ccccc-ceEEEEEcCCCCeEE-EEECCCcEEEEEecCC
Q 015490 339 K--------KAHLG-IVTALAFSYDSRALV-SASMDSSVRVTVIEDK 375 (406)
Q Consensus 339 ~--------~~~~~-~v~~~~~sp~~~~l~-s~s~dg~i~iw~~~~~ 375 (406)
. .++.. .=....|+|||++++ ++...|...||-++-+
T Consensus 337 ~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 337 RHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEIP 383 (386)
T ss_dssp E-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE--
T ss_pred eccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEeCc
Confidence 1 01111 113679999999876 5556788777766543
No 347
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.18 E-value=0.0024 Score=59.14 Aligned_cols=174 Identities=16% Similarity=0.202 Sum_probs=89.3
Q ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeec--cCCce-----eEEEEccCCCEEEEEeCCCCEEEEEcCC
Q 015490 168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESE--AHASV-----KDLSFSPDGKFLVSLGNRGPGRVWDLAS 240 (406)
Q Consensus 168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~i-----~~~~~s~~~~~l~s~s~d~~i~iwd~~~ 240 (406)
+.+.++.|+.+.+++ +-..||.+++||+... ....+.. ....| ....+..+| ++....++.+.+.+--.
T Consensus 81 ~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~G~-~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~ 156 (410)
T PF04841_consen 81 GRIVGMGWTDDEELV-VVQSDGTVRVYDLFGE-FQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNID 156 (410)
T ss_pred CCEEEEEECCCCeEE-EEEcCCEEEEEeCCCc-eeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCcc
Confidence 789999999875555 5578999999998633 3111110 01122 222333345 33334444444433212
Q ss_pred Ce-eeeecc---cCCc-----ceEEE-EEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcC
Q 015490 241 SA-VATPLA---KEND-----ELFAS-CRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSA 310 (406)
Q Consensus 241 ~~-~~~~~~---~~~~-----~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp 310 (406)
.. ....+. .... ..... ..++.+.. ..+.+ ..++.+.+.+....+. +. ..+++..|+.||
T Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~----~~i~~--~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSp 226 (410)
T PF04841_consen 157 EPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV----VEILL--ANGETIYIIDENSFKQ---ID-SDGPIIKIAVSP 226 (410)
T ss_pred ccchhhccccCCCcccccccccccccceEeecCcc----eEEEE--ecCCEEEEEEcccccc---cc-CCCCeEEEEECC
Confidence 11 111111 1000 00000 11222222 11111 1234555444332211 11 236799999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCC
Q 015490 311 DGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDS 355 (406)
Q Consensus 311 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~ 355 (406)
+|++||.-..+|.+.+.+.+-.+....+...-......+.|.-+.
T Consensus 227 ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 227 NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred CCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 999999999999999998766666666543333455667776543
No 348
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.17 E-value=0.00057 Score=66.95 Aligned_cols=133 Identities=12% Similarity=0.110 Sum_probs=84.2
Q ss_pred CCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCC-------CCEEEEeeCCCeEEEEeCCCcc--eEee
Q 015490 134 NSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSE-------GTIFAAGSENGNLRVFKWPSLE--IILN 204 (406)
Q Consensus 134 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-------g~~l~~~~~dg~i~vwd~~~~~--~~~~ 204 (406)
..-.||.+|...++.+..... +..+.-..+.|+ ...-+.|-.+..+..||.+-.. .+..
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~------------~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~ 569 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKV------------HDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS 569 (794)
T ss_pred CCCceEEEecCCCcEEEEeec------------CCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeec
Confidence 334788888876665554443 322222333332 2345567778889999987532 2211
Q ss_pred e---eccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcE
Q 015490 205 E---SEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGAS 281 (406)
Q Consensus 205 ~---~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 281 (406)
. .......+|++-+.+| +||+|+.+|.||+||- .|+..++....-+.+|..+..+.+|+. +++++ +..
T Consensus 570 ~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkw-----ilaTc--~ty 640 (794)
T PF08553_consen 570 QSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKW-----ILATC--KTY 640 (794)
T ss_pred cccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcE-----EEEee--cce
Confidence 1 1122267788877777 6999999999999994 444444444455678999999999995 55544 556
Q ss_pred EEEEeC
Q 015490 282 IVTWNT 287 (406)
Q Consensus 282 i~~~d~ 287 (406)
|.+++.
T Consensus 641 LlLi~t 646 (794)
T PF08553_consen 641 LLLIDT 646 (794)
T ss_pred EEEEEE
Confidence 777764
No 349
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=2.5e-05 Score=68.06 Aligned_cols=94 Identities=13% Similarity=0.140 Sum_probs=74.6
Q ss_pred EEEEeCCCcceEeeeeccCCceeEEEEccCCC-EEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceE
Q 015490 191 LRVFKWPSLEIILNESEAHASVKDLSFSPDGK-FLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYV 269 (406)
Q Consensus 191 i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (406)
+++.+-.+.+....+..+...|.+++|||..+ ++..++.+..|+|.|+++...+..+..+ ..+++++|.-+..+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wDlde~h--- 249 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDLDERH--- 249 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc--CCceeeeeccCCcc---
Confidence 55555555555554555556899999999877 7888999999999999998888877655 56889999999886
Q ss_pred EEEEEEcCCCcEEEEEeCCCce
Q 015490 270 LYIAAITDRGASIVTWNTTTWK 291 (406)
Q Consensus 270 l~~~~~~~~~~~i~~~d~~~~~ 291 (406)
.+..|..+|.|.+||++..+
T Consensus 250 --~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 250 --VIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred --eeEEeccCceEEEEEccCCC
Confidence 55667889999999998644
No 350
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.14 E-value=6.5e-07 Score=82.11 Aligned_cols=201 Identities=15% Similarity=0.124 Sum_probs=125.7
Q ss_pred ccCcEEEEEECCC--CCEEEEeeCCCeEEEEeCCCcce--EeeeeccCCceeEEEEcc-CCCEEEEEe----CCCCEEEE
Q 015490 166 NVGQQLALTFDSE--GTIFAAGSENGNLRVFKWPSLEI--ILNESEAHASVKDLSFSP-DGKFLVSLG----NRGPGRVW 236 (406)
Q Consensus 166 ~~~~v~~~~~s~~--g~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~-~~~~l~s~s----~d~~i~iw 236 (406)
....+.|+++.-+ ...+++|..+|.|.+-.++...- .....++....++++|++ |.+.||.|- .|..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 3456778887654 35888999999999988754322 223344555889999988 445666653 36679999
Q ss_pred EcCCC--eeee--ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcC-C
Q 015490 237 DLASS--AVAT--PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSA-D 311 (406)
Q Consensus 237 d~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp-~ 311 (406)
|+.++ .+.. .+.........+++|..+.+ ++.+|.....+.++|++.... .........+..+..+| .
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~k------lvlaGm~sr~~~ifdlRqs~~-~~~svnTk~vqG~tVdp~~ 207 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK------LVLAGMTSRSVHIFDLRQSLD-SVSSVNTKYVQGITVDPFS 207 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCcc------hhhcccccchhhhhhhhhhhh-hhhhhhhhhcccceecCCC
Confidence 99876 2211 22221222344778886655 455666778899999984221 11112234566788888 7
Q ss_pred CCEEEEEeCCCcEEEEE-CCCce-EEEEeec---ccccceEEEEEcCCC-CeEEEEEC-CCcEEEEEecC
Q 015490 312 GKLLAVGTASGDISIID-SSSLQ-VRTAVKK---AHLGIVTALAFSYDS-RALVSASM-DSSVRVTVIED 374 (406)
Q Consensus 312 ~~~l~~~~~dg~i~i~d-~~~~~-~~~~~~~---~~~~~v~~~~~sp~~-~~l~s~s~-dg~i~iw~~~~ 374 (406)
++|++.-. ||.|.+|| ..+-+ ++..+.. .....+..++|+|.. ..+++.+. .++|+.+++..
T Consensus 208 ~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 208 PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 77887655 99999999 33322 2222220 111248899999953 23555554 47899999854
No 351
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.09 E-value=0.0026 Score=58.27 Aligned_cols=213 Identities=18% Similarity=0.182 Sum_probs=118.1
Q ss_pred cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceE-------------------------------------------eee
Q 015490 169 QQLALTFDSEGTIFAAGSENGNLRVFKWPSLEII-------------------------------------------LNE 205 (406)
Q Consensus 169 ~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~-------------------------------------------~~~ 205 (406)
.|+.+.|+++...|++|...|.|.||.+...+.. .-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4788999999889999999999999976321100 011
Q ss_pred eccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeec-------ccCCcceEEEEEEEcC--CCCceEEEEEEEc
Q 015490 206 SEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPL-------AKENDELFASCRFSPL--NNEDYVLYIAAIT 276 (406)
Q Consensus 206 ~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-------~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~ 276 (406)
....++|++++.|. =-+++.|..+|.+.|.|++....+..- .......++++.|... +...+.-.++..+
T Consensus 83 ~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 12235788888874 448999999999999999988766542 2223445777877631 1111223344445
Q ss_pred CCCcEEEEEeCC--C-ceE----EEEeeecCCCeEEEE-EcCC-C-------------------CEEEEEeCCCcEEEEE
Q 015490 277 DRGASIVTWNTT--T-WKR----IRTKQVVREPVSSFN-VSAD-G-------------------KLLAVGTASGDISIID 328 (406)
Q Consensus 277 ~~~~~i~~~d~~--~-~~~----~~~~~~~~~~i~~~~-~sp~-~-------------------~~l~~~~~dg~i~i~d 328 (406)
...|.+.+|.+. . +.. ......+.+.+..+. ++.+ | .-+++...+..++++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 566899888763 1 211 111123445555554 3221 1 1234444577899999
Q ss_pred CCCceEEEEeecccccceEEEEEc-----CCCCeEEEEECCCcEEEEEecCCcCCCCchH
Q 015490 329 SSSLQVRTAVKKAHLGIVTALAFS-----YDSRALVSASMDSSVRVTVIEDKKKSGGLNL 383 (406)
Q Consensus 329 ~~~~~~~~~~~~~~~~~v~~~~~s-----p~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 383 (406)
..+.+...+.. ........+.+- ..+..|++-..+|.|+++.+..-+++...++
T Consensus 242 ~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l 300 (395)
T PF08596_consen 242 PPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL 300 (395)
T ss_dssp TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-
T ss_pred CCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccC
Confidence 98877766554 222233344452 3567788889999999999999888776655
No 352
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.05 E-value=0.0017 Score=61.04 Aligned_cols=275 Identities=12% Similarity=0.165 Sum_probs=138.2
Q ss_pred CCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEeccc
Q 015490 67 RRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVE 145 (406)
Q Consensus 67 ~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~ 145 (406)
....++.++...| .++.++...+.. ......+..+.+..+..|++..++++|+ ++.+.++.++..
T Consensus 43 st~~~l~~GsS~G----------~lyl~~R~~~~~---~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~- 108 (726)
T KOG3621|consen 43 ATEEYLAMGSSAG----------SVYLYNRHTGEM---RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE- 108 (726)
T ss_pred cCCceEEEecccc----------eEEEEecCchhh---hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhcc-
Confidence 3555666654333 566666655432 2233334566677778888887777776 566666555431
Q ss_pred ccceeecceeccceeeecc--cccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc----eEeeeeccCCceeEEEEcc
Q 015490 146 NTEIRRLGVKISEKVLSQL--ENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLE----IILNESEAHASVKDLSFSP 219 (406)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~~s~ 219 (406)
... ....+... .|...|+|++|++++..+++|...|+|..-.++... ....+....+.|-.+...
T Consensus 109 -~p~-------~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~- 179 (726)
T KOG3621|consen 109 -LPR-------DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL- 179 (726)
T ss_pred -CCC-------cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-
Confidence 111 11111111 245789999999999999999999999998887621 122233334466666654
Q ss_pred CCCEEEEEeCCCCEEEEEcCCCeeeeeccc-CCcc-eEEEEEEEcCC--CCceEEEEEEEcCCCcEEEEEeCCC-ceEEE
Q 015490 220 DGKFLVSLGNRGPGRVWDLASSAVATPLAK-ENDE-LFASCRFSPLN--NEDYVLYIAAITDRGASIVTWNTTT-WKRIR 294 (406)
Q Consensus 220 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-~~~~-~~~~~~~~~~~--~~~~~l~~~~~~~~~~~i~~~d~~~-~~~~~ 294 (406)
++..|++... ...+++.+.+.. ..+.. ..+. .-...+|-|.. .....+ .+. .-..++|..+- |..++
T Consensus 180 q~~LLVStl~--r~~Lc~tE~eti-~QIG~k~R~~~~~~GACF~~g~~~~q~~~I--yca---RPG~RlWead~~G~V~~ 251 (726)
T KOG3621|consen 180 QSYLLVSTLT--RCILCQTEAETI-TQIGKKPRKSLIDFGACFFPGQCKAQKPQI--YCA---RPGLRLWEADFAGEVIK 251 (726)
T ss_pred cceehHhhhh--hhheeecchhHH-HHhcCCCcCCccccceEEeeccccCCCceE--EEe---cCCCceEEeecceeEEE
Confidence 2333333332 234555544331 11111 1111 01233444431 111122 221 22345665542 23333
Q ss_pred EeeecC------CC---e---------------EEEEEcC----CCCEEEEEeCCCcEEEEECCCceEEEEeecccccce
Q 015490 295 TKQVVR------EP---V---------------SSFNVSA----DGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIV 346 (406)
Q Consensus 295 ~~~~~~------~~---i---------------~~~~~sp----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v 346 (406)
+....+ .+ + ..+.|.. .+.++++-++-| |+|+|.++.+.+.-.. ....|
T Consensus 252 Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v~l~se--~~~DI 328 (726)
T KOG3621|consen 252 THQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQVYLWSE--GGHDI 328 (726)
T ss_pred eeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceEEEeec--CCCce
Confidence 322110 00 0 0111110 112333334344 8888887766554432 23345
Q ss_pred EEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490 347 TALAFSYDSRALVSASMDSSVRVTVIEDKKK 377 (406)
Q Consensus 347 ~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~ 377 (406)
..++. +|+-|+.-..|+.+++..+.+..+
T Consensus 329 ~dVs~--~~neiFvL~~d~~l~~~sv~s~qr 357 (726)
T KOG3621|consen 329 LDVSH--CGNEIFVLNLDRGLKVESVASRQR 357 (726)
T ss_pred eEEee--cCceEEEEecCCceeEEEeehhHH
Confidence 55554 355566667788888888876544
No 353
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=2.8e-05 Score=71.65 Aligned_cols=95 Identities=15% Similarity=0.194 Sum_probs=79.8
Q ss_pred cCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCcee-EEEEccCCCEEEEEeCCCCEEEEEcCCCeeee
Q 015490 167 VGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVK-DLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT 245 (406)
Q Consensus 167 ~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~ 245 (406)
...+.-+.|+|.-.++|.+..+|.|.+..+. .+.+..+.-+...++ +++|.|||+.|++|-.||+|++.|+.++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3567889999999999999999999999987 777777775666666 99999999999999999999999999998887
Q ss_pred ecccCCcceEEEEEEEc
Q 015490 246 PLAKENDELFASCRFSP 262 (406)
Q Consensus 246 ~~~~~~~~~~~~~~~~~ 262 (406)
.........+.++-|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 75444455677777764
No 354
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.01 E-value=0.011 Score=56.49 Aligned_cols=194 Identities=16% Similarity=0.203 Sum_probs=114.7
Q ss_pred CeEEEEEecccccceeecceeccce-eeecc--------cccCcE-EEEEECCCCCEEEEeeCCC---------------
Q 015490 135 SCRLFEWDEVENTEIRRLGVKISEK-VLSQL--------ENVGQQ-LALTFDSEGTIFAAGSENG--------------- 189 (406)
Q Consensus 135 ~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~v-~~~~~s~~g~~l~~~~~dg--------------- 189 (406)
...++-+|..+++...+........ ..... .....+ ...++.+.+..++.++.++
T Consensus 174 ~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~ 253 (488)
T cd00216 174 RGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNL 253 (488)
T ss_pred CcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCC
Confidence 3577888888888777655421111 00000 000111 1345555566777776554
Q ss_pred ---eEEEEeCCCcceEeeeeccCCcee------EEEEc----cCCC---EEEEEeCCCCEEEEEcCCCeeeeecccCCcc
Q 015490 190 ---NLRVFKWPSLEIILNESEAHASVK------DLSFS----PDGK---FLVSLGNRGPGRVWDLASSAVATPLAKENDE 253 (406)
Q Consensus 190 ---~i~vwd~~~~~~~~~~~~~~~~i~------~~~~s----~~~~---~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~ 253 (406)
.|.-+|..+|+..-.......... ...+. -++. .++.++.+|.+...|.++|+.+-......
T Consensus 254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~-- 331 (488)
T cd00216 254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE-- 331 (488)
T ss_pred ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--
Confidence 799999999998876543221111 01111 1333 57778889999999999998876543210
Q ss_pred eEEEEEEEcCCCCceEEEEEE---------------EcCCCcEEEEEeCCCceEEEEeeecC--------CCe--EEEEE
Q 015490 254 LFASCRFSPLNNEDYVLYIAA---------------ITDRGASIVTWNTTTWKRIRTKQVVR--------EPV--SSFNV 308 (406)
Q Consensus 254 ~~~~~~~~~~~~~~~~l~~~~---------------~~~~~~~i~~~d~~~~~~~~~~~~~~--------~~i--~~~~~ 308 (406)
..++.+| . .+|+.. ....++.+.-+|+.+++.+-+..... .+. ..+..
T Consensus 332 --~~~~~~~--~---~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~ 404 (488)
T cd00216 332 --QPMAYDP--G---LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT 404 (488)
T ss_pred --cccccCC--c---eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe
Confidence 1122233 1 122211 12346889999999998877665431 111 11222
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCceEEEEee
Q 015490 309 SADGKLLAVGTASGDISIIDSSSLQVRTAVK 339 (406)
Q Consensus 309 sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 339 (406)
.+..|++++.||.|+.+|.++++.+-+..
T Consensus 405 --~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 405 --AGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred --cCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 46788899999999999999999988875
No 355
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.99 E-value=0.017 Score=55.50 Aligned_cols=241 Identities=9% Similarity=0.035 Sum_probs=130.4
Q ss_pred eEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEE-EEECCCCCEEEEee------CCCeEEEEeCCCc
Q 015490 127 GIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLA-LTFDSEGTIFAAGS------ENGNLRVFKWPSL 199 (406)
Q Consensus 127 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l~~~~------~dg~i~vwd~~~~ 199 (406)
.++++. ...+|+-+|..+++.......... .....+.+ .... ++ .++++. .+|.|..+|.++|
T Consensus 122 ~v~v~t-~dg~l~ALDa~TGk~~W~~~~~~~-------~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG 191 (527)
T TIGR03075 122 KVFFGT-LDARLVALDAKTGKVVWSKKNGDY-------KAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTG 191 (527)
T ss_pred EEEEEc-CCCEEEEEECCCCCEEeecccccc-------cccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCC
Confidence 444443 233677788888877766443100 00001110 0011 33 344443 2688999999998
Q ss_pred ceEeeeeccCC-------------------------------ce-eEEEEccCCCEEEEEeCC-----C-----------
Q 015490 200 EIILNESEAHA-------------------------------SV-KDLSFSPDGKFLVSLGNR-----G----------- 231 (406)
Q Consensus 200 ~~~~~~~~~~~-------------------------------~i-~~~~~s~~~~~l~s~s~d-----~----------- 231 (406)
+.+-.+..... .+ ..+++.|+..+++.+..+ +
T Consensus 192 ~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~ 271 (527)
T TIGR03075 192 KLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTS 271 (527)
T ss_pred ceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccce
Confidence 87655322111 11 124556655666655421 1
Q ss_pred CEEEEEcCCCeeeeecccCCcc--------eEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeee-----
Q 015490 232 PGRVWDLASSAVATPLAKENDE--------LFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV----- 298 (406)
Q Consensus 232 ~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~----- 298 (406)
+|.-.|+++|+..-.++..+.. ...-+....+++. .=+++.+..+|.+++.|.++++.+.....
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~---~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~ 348 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKP---RKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVN 348 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcE---EEEEEEeCCCceEEEEECCCCceeccccccCCcc
Confidence 5667788888877655432211 1111222235542 12556678999999999999987521100
Q ss_pred -------cC-C----------------------------CeEEEEEcCCCCEEEEEeCC---------------------
Q 015490 299 -------VR-E----------------------------PVSSFNVSADGKLLAVGTAS--------------------- 321 (406)
Q Consensus 299 -------~~-~----------------------------~i~~~~~sp~~~~l~~~~~d--------------------- 321 (406)
.. . .-..++++|+..++++...+
T Consensus 349 w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~ 428 (527)
T TIGR03075 349 WATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGA 428 (527)
T ss_pred cccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceecc
Confidence 00 0 01125667766655543332
Q ss_pred ------------CcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCch
Q 015490 322 ------------GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLN 382 (406)
Q Consensus 322 ------------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~ 382 (406)
|.|.-+|+.+++..-...... ....+. ..-.+.+++.++.||.++.+|.++++.+-++.
T Consensus 429 ~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~-p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~ 499 (527)
T TIGR03075 429 GLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDF-PLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFK 499 (527)
T ss_pred ccccCCCCCCCceeEEEEeCCCCceeeEecCCC-CCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence 457777888887776654211 111121 11245567778889999999999999865543
No 356
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.99 E-value=0.00067 Score=62.89 Aligned_cols=141 Identities=16% Similarity=0.171 Sum_probs=79.6
Q ss_pred ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc
Q 015490 211 SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW 290 (406)
Q Consensus 211 ~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~ 290 (406)
....+.++|+|++++++ .||.-.|+.....+.... ..-....|.+.++. +.-.....|.++.--..
T Consensus 34 ~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~------G~g~~~vw~~~n~y-------Av~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF------GSGLSFVWSSRNRY-------AVLESSSTIKIYKNFKN 99 (443)
T ss_dssp --SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE------EE-SEEEE-TSSEE-------EEE-TTS-EEEEETTEE
T ss_pred CCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc------CceeEEEEecCccE-------EEEECCCeEEEEEcCcc
Confidence 57899999999988884 477888887443333221 11235778885542 33344778888633222
Q ss_pred eEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEE
Q 015490 291 KRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVT 370 (406)
Q Consensus 291 ~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw 370 (406)
+....+... ..+..+-. |.+|...+.+ .|.+||..+++.++.+. .. +|..+.|+++|.+++-.+.+ .+.|+
T Consensus 100 ~~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~--v~-~vk~V~Ws~~g~~val~t~~-~i~il 170 (443)
T PF04053_consen 100 EVVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRID--VS-AVKYVIWSDDGELVALVTKD-SIYIL 170 (443)
T ss_dssp -TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEES--S--E-EEEEE-TTSSEEEEE-S--SEEEE
T ss_pred ccceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEe--cC-CCcEEEEECCCCEEEEEeCC-eEEEE
Confidence 222233322 23444433 8777776644 89999999999999985 33 48999999999999888755 67887
Q ss_pred EecC
Q 015490 371 VIED 374 (406)
Q Consensus 371 ~~~~ 374 (406)
+...
T Consensus 171 ~~~~ 174 (443)
T PF04053_consen 171 KYNL 174 (443)
T ss_dssp EE-H
T ss_pred Eecc
Confidence 7643
No 357
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.95 E-value=0.0049 Score=55.10 Aligned_cols=201 Identities=15% Similarity=0.070 Sum_probs=98.1
Q ss_pred EECCCCCEEEEeeC-C--CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccC
Q 015490 174 TFDSEGTIFAAGSE-N--GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKE 250 (406)
Q Consensus 174 ~~s~~g~~l~~~~~-d--g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 250 (406)
+|.+||+.|+.++. | ..+.+.|+.+++..+-..+.........++|+++.++.......++-.|+++.+....+..+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 67889966665544 4 46777888888776544433333446778899998887776778999999988765444433
Q ss_pred CcceEEEEEEEcCCCCceEEEEEEEc------------------CCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCC-
Q 015490 251 NDELFASCRFSPLNNEDYVLYIAAIT------------------DRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSAD- 311 (406)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~l~~~~~~------------------~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~- 311 (406)
........|..+.....++.+.... .....|.-.|+.+++....+. ....+..+.|||.
T Consensus 122 -~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 122 -DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTD 199 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTE
T ss_pred -cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCC
Confidence 3334445665433221122221111 113457778888877655554 4467889999994
Q ss_pred CCEEEEEeC------CCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEE-----CCCcEEEEEecCCc
Q 015490 312 GKLLAVGTA------SGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSAS-----MDSSVRVTVIEDKK 376 (406)
Q Consensus 312 ~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s-----~dg~i~iw~~~~~~ 376 (406)
...|+.|-+ |..|.+.+.................+..=-|.|||..|.--+ .+..|.-+++.+++
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~ 275 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGE 275 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence 455555543 234555554433322222212233455667899988765432 23345556666654
No 358
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.95 E-value=0.0023 Score=62.85 Aligned_cols=136 Identities=12% Similarity=0.074 Sum_probs=91.8
Q ss_pred eCCCeEEEEeCCCcceEeeeeccCC-ceeEEEEcc-----CCCEEEEEeCCCCEEEEEcCCCe--eeee-c-ccCCcceE
Q 015490 186 SENGNLRVFKWPSLEIILNESEAHA-SVKDLSFSP-----DGKFLVSLGNRGPGRVWDLASSA--VATP-L-AKENDELF 255 (406)
Q Consensus 186 ~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~-----~~~~l~s~s~d~~i~iwd~~~~~--~~~~-~-~~~~~~~~ 255 (406)
.....|+-.|++.|+.+..+..+.. +|..++=.. +....+.|-.++.+..||.+-.. .+.. . ........
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 3457899999999999998887765 355544321 12345567778899999998543 2211 1 11223346
Q ss_pred EEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 015490 256 ASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDS 329 (406)
Q Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~ 329 (406)
.|++-+.+|. ++.|+.+|.|++||--..+....+.+-+.+|..+..+.||+||++.+. ..+.+++.
T Consensus 581 s~~aTt~~G~-------iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 581 SCFATTEDGY-------IAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred eEEEecCCce-------EEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 6777777764 577789999999995433333344455789999999999999987764 45666664
No 359
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.95 E-value=0.00017 Score=67.55 Aligned_cols=195 Identities=12% Similarity=0.067 Sum_probs=119.0
Q ss_pred cCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeee-ccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeee-
Q 015490 167 VGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNES-EAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVA- 244 (406)
Q Consensus 167 ~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~- 244 (406)
+..+.--+++..+++++.|+.-|.+++|+-..++....-. +.++.+.....|++..++|.|+..|.|.++-+..+.+.
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 3455556677788999999999999999966555432222 24446677788998889999999999999988764322
Q ss_pred ----eecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce----EEEEeeecCCCeEEEEEcCCCCEEE
Q 015490 245 ----TPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK----RIRTKQVVREPVSSFNVSADGKLLA 316 (406)
Q Consensus 245 ----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~i~~~~~sp~~~~l~ 316 (406)
......+...|++++|++++.+ +.+|+..|.|.+-.+.+.. ....+....+.|..+... ++ +|+
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k------~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~-~LL 184 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMK------LYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QS-YLL 184 (726)
T ss_pred ceeeccccccCCceEEEEEecccccE------EeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cc-eeh
Confidence 1222234678999999999985 5678889999988877621 122222334667777665 23 333
Q ss_pred EEeCCCcEEEEECCCce--EEEEeecccccc-eEEEEEcCC----CCeEEEEECCCcEEEEEec
Q 015490 317 VGTASGDISIIDSSSLQ--VRTAVKKAHLGI-VTALAFSYD----SRALVSASMDSSVRVTVIE 373 (406)
Q Consensus 317 ~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~-v~~~~~sp~----~~~l~s~s~dg~i~iw~~~ 373 (406)
+++.-. -.+++++... .+..- .-.+. -...+|-|. .+-.+.++.-| .|+|..+
T Consensus 185 VStl~r-~~Lc~tE~eti~QIG~k--~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead 244 (726)
T KOG3621|consen 185 VSTLTR-CILCQTEAETITQIGKK--PRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEAD 244 (726)
T ss_pred Hhhhhh-hheeecchhHHHHhcCC--CcCCccccceEEeeccccCCCceEEEecCC-CceEEee
Confidence 333222 2344544322 11111 11121 224445443 33344555554 6888775
No 360
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.89 E-value=0.00093 Score=64.44 Aligned_cols=151 Identities=12% Similarity=0.100 Sum_probs=89.8
Q ss_pred ceeEEEEccCCCEEEEEe------CCC--CEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEE---------
Q 015490 211 SVKDLSFSPDGKFLVSLG------NRG--PGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIA--------- 273 (406)
Q Consensus 211 ~i~~~~~s~~~~~l~s~s------~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------- 273 (406)
.+.+.+++|||+.++... .|. .|.+++.. +.. ..+... .......|+|++.. ++.+
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g--~~~t~PsWspDG~~---lw~v~dg~~~~~v 423 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEG--HSLTRPSWSLDADA---VWVVVDGNTVVRV 423 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecC--CCCCCceECCCCCc---eEEEecCcceEEE
Confidence 678899999999887765 243 45555542 222 333222 22667899999774 1111
Q ss_pred EEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEE---EECCCceE-E---EEeecccccce
Q 015490 274 AITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISI---IDSSSLQV-R---TAVKKAHLGIV 346 (406)
Q Consensus 274 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i---~d~~~~~~-~---~~~~~~~~~~v 346 (406)
......+.+++.+++.+.... ...+.|..+.|||||..++... ++.|++ -....+.. + ..+.......+
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~ 499 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTA 499 (591)
T ss_pred eccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcc
Confidence 111233455555665544322 2245799999999999998876 577777 45444541 1 11221233346
Q ss_pred EEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490 347 TALAFSYDSRALVSASMDSSVRVTVIE 373 (406)
Q Consensus 347 ~~~~~sp~~~~l~s~s~dg~i~iw~~~ 373 (406)
.++.|..++.++ .+..++...+|.+.
T Consensus 500 ~~l~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 500 VSLDWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred ccceEecCCEEE-EEecCCCCceEEEe
Confidence 889999998854 55555555566653
No 361
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.85 E-value=0.0047 Score=55.51 Aligned_cols=175 Identities=16% Similarity=0.177 Sum_probs=104.7
Q ss_pred CeEEEEeCCCcceEeeeeccCC-ceeEEE---EccC----CCEEEEEeC----------CCCEEEEEcCCC-----eeee
Q 015490 189 GNLRVFKWPSLEIILNESEAHA-SVKDLS---FSPD----GKFLVSLGN----------RGPGRVWDLASS-----AVAT 245 (406)
Q Consensus 189 g~i~vwd~~~~~~~~~~~~~~~-~i~~~~---~s~~----~~~l~s~s~----------d~~i~iwd~~~~-----~~~~ 245 (406)
..|++.|..+.+.+..+.-... .+.+++ +..+ ..+|++|+. .|.|.++++... +...
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3688888888776655544333 444443 3332 457777753 288999999884 2222
Q ss_pred ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce-EEEEeee-cCCCeEEEEEcCCCCEEEEEeCCCc
Q 015490 246 PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK-RIRTKQV-VREPVSSFNVSADGKLLAVGTASGD 323 (406)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~-~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg~ 323 (406)
........++.+++-- +.. ++++. +..|.+|++...+ ....-.. ....+.++... ++++++|.....
T Consensus 82 i~~~~~~g~V~ai~~~--~~~----lv~~~---g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~s 150 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGR----LVVAV---GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKS 150 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTE----EEEEE---TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSS
T ss_pred EEEEeecCcceEhhhh--CCE----EEEee---cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccC
Confidence 2222234456666554 332 23332 5789999987766 4333222 22355566554 669999998888
Q ss_pred EEEEECCC-ceEEEEee-cccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490 324 ISIIDSSS-LQVRTAVK-KAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED 374 (406)
Q Consensus 324 i~i~d~~~-~~~~~~~~-~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~ 374 (406)
+.++..+. ...+..+. ......++++.|-+++..++.+..+|.+.++....
T Consensus 151 v~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 151 VSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 88775432 23222222 23455688999987767899999999999999874
No 362
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=9.4e-05 Score=68.35 Aligned_cols=93 Identities=20% Similarity=0.250 Sum_probs=76.3
Q ss_pred eEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeE-EEEEcCCCCEEEEEeCCCcEEEEECCCc
Q 015490 254 LFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVS-SFNVSADGKLLAVGTASGDISIIDSSSL 332 (406)
Q Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~-~~~~sp~~~~l~~~~~dg~i~i~d~~~~ 332 (406)
.+..+.|+|.-. ++|....+|.|.+..++ ++.+.++..+...++ +++|.|||+.||+|-.||+|++.|..++
T Consensus 22 ~i~~~ewnP~~d------LiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 22 NIKRIEWNPKMD------LIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred ceEEEEEcCccc------hhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 366789999877 56677788999999888 778888886776677 9999999999999999999999999998
Q ss_pred eEEEEeecccccceEEEEEcC
Q 015490 333 QVRTAVKKAHLGIVTALAFSY 353 (406)
Q Consensus 333 ~~~~~~~~~~~~~v~~~~~sp 353 (406)
..+......-...|.++.|++
T Consensus 95 ~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 95 GRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred Cceeccccccccchheeeccc
Confidence 887774334566788888863
No 363
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.82 E-value=0.0088 Score=55.45 Aligned_cols=173 Identities=15% Similarity=0.175 Sum_probs=90.7
Q ss_pred eEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeeccc--CCcceEEEE----EEEcC
Q 015490 190 NLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAK--ENDELFASC----RFSPL 263 (406)
Q Consensus 190 ~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~----~~~~~ 263 (406)
.|+||+. .|+.+..+.-..+.|.++.|+.+. .|++...||.+++||+.... ...+.. .......+. .+..+
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCC
Confidence 5999995 566666655444789999999865 56677789999999986333 211111 111111111 11112
Q ss_pred CCCceEEEEEEEcCCCcEEEEEeCCCce-EEEEeeecCCCeEE----------EEEcCCCCEEEEEeCCCcEEEEECCCc
Q 015490 264 NNEDYVLYIAAITDRGASIVTWNTTTWK-RIRTKQVVREPVSS----------FNVSADGKLLAVGTASGDISIIDSSSL 332 (406)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~i~~----------~~~sp~~~~l~~~~~dg~i~i~d~~~~ 332 (406)
| + ++. ..++.+++.+-.... ..+.+..-...... ..++.+....+....++.+.+.+....
T Consensus 139 G-----i-vvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~ 210 (410)
T PF04841_consen 139 G-----I-VVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF 210 (410)
T ss_pred C-----E-EEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc
Confidence 2 1 122 224444444322211 11111100000000 223334444444444455554443322
Q ss_pred eEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCC
Q 015490 333 QVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKS 378 (406)
Q Consensus 333 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~ 378 (406)
+. + ...+++..|+.||+|+++|.-..+|.+.+....-.+..
T Consensus 211 ~~---i--~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~ 251 (410)
T PF04841_consen 211 KQ---I--DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKL 251 (410)
T ss_pred cc---c--cCCCCeEEEEECCCCCEEEEEECCCCEEEEECccccee
Confidence 11 2 13468999999999999999999999988876544433
No 364
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.79 E-value=8.3e-06 Score=75.14 Aligned_cols=155 Identities=15% Similarity=0.222 Sum_probs=97.9
Q ss_pred cCcEEEEEECC-CCCEEEEee----CCCeEEEEeCCCcc----eEeeeec-cCCceeEEEEccCCCEEEEEeCCCCEEEE
Q 015490 167 VGQQLALTFDS-EGTIFAAGS----ENGNLRVFKWPSLE----IILNESE-AHASVKDLSFSPDGKFLVSLGNRGPGRVW 236 (406)
Q Consensus 167 ~~~v~~~~~s~-~g~~l~~~~----~dg~i~vwd~~~~~----~~~~~~~-~~~~i~~~~~s~~~~~l~s~s~d~~i~iw 236 (406)
...+++++|++ |.+.||.|- .|..+.|||+.++- ....+.. ......+++|..+.+.+.+|.....++++
T Consensus 102 ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~if 181 (783)
T KOG1008|consen 102 ARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIF 181 (783)
T ss_pred cccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhh
Confidence 36789999998 667888773 36689999997761 1112222 22256789999999999999999999999
Q ss_pred EcCCCe-eeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEe-CCCceE-EEEeeecC----CCeEEEEEc
Q 015490 237 DLASSA-VATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWN-TTTWKR-IRTKQVVR----EPVSSFNVS 309 (406)
Q Consensus 237 d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~-~~~~~~~~----~~i~~~~~s 309 (406)
|++... ....+. ...+..+...|-... |+ ++ ..++.|.+|| .+.-+. +..+.... ..+..++|+
T Consensus 182 dlRqs~~~~~svn---Tk~vqG~tVdp~~~n----Y~-cs-~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ayc 252 (783)
T KOG1008|consen 182 DLRQSLDSVSSVN---TKYVQGITVDPFSPN----YF-CS-NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYC 252 (783)
T ss_pred hhhhhhhhhhhhh---hhhcccceecCCCCC----ce-ec-cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEec
Confidence 998432 222222 123445667773332 12 22 3499999999 443222 22222111 248899999
Q ss_pred CCCC-EEEEEeC-CCcEEEEECC
Q 015490 310 ADGK-LLAVGTA-SGDISIIDSS 330 (406)
Q Consensus 310 p~~~-~l~~~~~-dg~i~i~d~~ 330 (406)
|... .+++... .++|++||+.
T Consensus 253 Ptrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 253 PTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred cCCcchhhhhccCcceEEEeccc
Confidence 9533 4444444 5789999985
No 365
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.78 E-value=0.029 Score=51.38 Aligned_cols=81 Identities=17% Similarity=0.144 Sum_probs=57.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccc-eEEEEEc-CC----------------CCe-EEEE
Q 015490 301 EPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGI-VTALAFS-YD----------------SRA-LVSA 361 (406)
Q Consensus 301 ~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-v~~~~~s-p~----------------~~~-l~s~ 361 (406)
..+.+++.+|++++.|+...-|.|.++|+.++..++.++ +..+. +.-+... .. ..+ ++-+
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK-GYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK-GYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc-cCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 457889999999999998778999999999988887775 43322 1111110 00 112 3345
Q ss_pred ECCCcEEEEEecCCcCCCCch
Q 015490 362 SMDSSVRVTVIEDKKKSGGLN 382 (406)
Q Consensus 362 s~dg~i~iw~~~~~~~~~~~~ 382 (406)
-.-|.|.||.++++.++..+.
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEE
Confidence 678999999999999877654
No 366
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.0014 Score=59.79 Aligned_cols=145 Identities=10% Similarity=0.039 Sum_probs=91.1
Q ss_pred cCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCC-------EEEEeeCCCeEEEEe
Q 015490 123 PHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGT-------IFAAGSENGNLRVFK 195 (406)
Q Consensus 123 p~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-------~l~~~~~dg~i~vwd 195 (406)
.+...++..+...-.|+.+|...++.+.. ...+..|+-+.+.|+.+ .-+.|-.|..|.-||
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeE------------Wk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriD 410 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEE------------WKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRID 410 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeE------------eeccCCcceeeccCCcchhcccccccEEeecCCceEEec
Confidence 34455555544444788888775554443 33444466777777653 123566678899999
Q ss_pred CCCcce-Eeee-eccC----CceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceE
Q 015490 196 WPSLEI-ILNE-SEAH----ASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYV 269 (406)
Q Consensus 196 ~~~~~~-~~~~-~~~~----~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (406)
.+-... .... ..+. ....|++-..+| +|++||.+|.|++||- .+....+....-+..|..+..+.+|+.
T Consensus 411 pRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKw--- 485 (644)
T KOG2395|consen 411 PRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKW--- 485 (644)
T ss_pred ccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcE---
Confidence 863222 1112 2221 145666665555 7999999999999997 555555555556778999999999995
Q ss_pred EEEEEEcCCCcEEEEEeCC
Q 015490 270 LYIAAITDRGASIVTWNTT 288 (406)
Q Consensus 270 l~~~~~~~~~~~i~~~d~~ 288 (406)
+++++ +..+.+.++.
T Consensus 486 --il~Tc--~tyLlLi~t~ 500 (644)
T KOG2395|consen 486 --ILATC--KTYLLLIDTL 500 (644)
T ss_pred --EEEec--ccEEEEEEEe
Confidence 45543 5566666653
No 367
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.77 E-value=0.015 Score=49.20 Aligned_cols=238 Identities=11% Similarity=0.048 Sum_probs=124.5
Q ss_pred CceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC-----
Q 015490 115 LPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE----- 187 (406)
Q Consensus 115 ~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----- 187 (406)
.-..|+|+|....-++-. -++ ..+.+|.....++..+.. ..-+.+-+ .-.|||||.+|+..-.
T Consensus 69 R~Hgi~~~p~~~ravafARrPGt-f~~vfD~~~~~~pv~~~s----~~~RHfyG-----HGvfs~dG~~LYATEndfd~~ 138 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGT-FAMVFDPNGAQEPVTLVS----QEGRHFYG-----HGVFSPDGRLLYATENDFDPN 138 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCc-eEEEECCCCCcCcEEEec----ccCceeec-----ccccCCCCcEEEeecCCCCCC
Confidence 345677888665444333 222 344455544433332211 01111122 2379999999987633
Q ss_pred CCeEEEEeCCCc-ceEeeeeccCCceeEEEEccCCCEEEEEeC------------------CCCEEEEEcCCCeeeeecc
Q 015490 188 NGNLRVFKWPSL-EIILNESEAHASVKDLSFSPDGKFLVSLGN------------------RGPGRVWDLASSAVATPLA 248 (406)
Q Consensus 188 dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~------------------d~~i~iwd~~~~~~~~~~~ 248 (406)
.|.|-|||.+.+ +.+..+..+.-.-..+.|.+||+.++.+.. .-++.+.|..+|+.+.+..
T Consensus 139 rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~ 218 (366)
T COG3490 139 RGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHT 218 (366)
T ss_pred CceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhcc
Confidence 378999998743 344455555557788999999999887643 1234455555555544332
Q ss_pred cC---CcceEEEEEEEcCCCCceEEEEEEEc---CCC-cEEEEEeCCCceEEEEeeec-------CCCeEEEEEcCCCCE
Q 015490 249 KE---NDELFASCRFSPLNNEDYVLYIAAIT---DRG-ASIVTWNTTTWKRIRTKQVV-------REPVSSFNVSADGKL 314 (406)
Q Consensus 249 ~~---~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~-~~i~~~d~~~~~~~~~~~~~-------~~~i~~~~~sp~~~~ 314 (406)
.. +.-.+..++..+++.- +...- ..+ .--.+=-...++.+.-+... ...|-+++.+.+..+
T Consensus 219 Lp~~l~~lSiRHld~g~dgtv-----wfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~gl 293 (366)
T COG3490 219 LPASLRQLSIRHLDIGRDGTV-----WFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGL 293 (366)
T ss_pred CchhhhhcceeeeeeCCCCcE-----EEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCe
Confidence 21 1223455555555541 11110 000 00000011112222222211 246778888876667
Q ss_pred EEEEeCC-CcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEe
Q 015490 315 LAVGTAS-GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVI 372 (406)
Q Consensus 315 l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~ 372 (406)
++..+-. +...+||..++..+.... - .....+.- ...-++..+.+|.+.++.-
T Consensus 294 V~lTSP~GN~~vi~da~tG~vv~~a~--l-~daaGva~--~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 294 VALTSPRGNRAVIWDAATGAVVSEAA--L-PDAAGVAA--AKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred EEEecCCCCeEEEEEcCCCcEEeccc--c-ccccccee--ccCceEEecCCceEEeccc
Confidence 7666654 457899999998876543 1 11222332 3334566677888888743
No 368
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.76 E-value=6.6e-05 Score=71.58 Aligned_cols=123 Identities=17% Similarity=0.167 Sum_probs=87.2
Q ss_pred EEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEE
Q 015490 257 SCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRT 336 (406)
Q Consensus 257 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~ 336 (406)
-.+|+|..+- ......+....|.|.+|- .+|++.+....+ -.++++||+|..-.|+.|-.-|.+.+|...+.+.-.
T Consensus 20 i~SWHPsePl--fAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P-~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht 95 (1416)
T KOG3617|consen 20 ISSWHPSEPL--FAVASFSPERGGSVTIFA-DTGEPQRDVTYP-VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT 95 (1416)
T ss_pred ccccCCCCce--eEEEEecCCCCceEEEEe-cCCCCCcccccc-eehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence 4567777763 111122334567777773 334443332221 235789999999899999999999999987765544
Q ss_pred EeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCchHH
Q 015490 337 AVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLNLW 384 (406)
Q Consensus 337 ~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~ 384 (406)
.. ..|..+|..+.||++|..|+|+..-|.|.+|...-..++...+++
T Consensus 96 v~-~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~ 142 (1416)
T KOG3617|consen 96 VV-ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIM 142 (1416)
T ss_pred ec-cCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhh
Confidence 44 479999999999999999999999999999999865554444443
No 369
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.76 E-value=0.025 Score=49.89 Aligned_cols=146 Identities=16% Similarity=0.127 Sum_probs=86.9
Q ss_pred CcEEEEEECCCCCEEEEeeC---------CCeEEEEeCC-CcceEeeeeccCCceeEEEEccCCCEEEEEeC-CCCEEEE
Q 015490 168 GQQLALTFDSEGTIFAAGSE---------NGNLRVFKWP-SLEIILNESEAHASVKDLSFSPDGKFLVSLGN-RGPGRVW 236 (406)
Q Consensus 168 ~~v~~~~~s~~g~~l~~~~~---------dg~i~vwd~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~-d~~i~iw 236 (406)
...+.+...|+|.+.++... ...=.+|.+. .+.....+..+-..-+.++||||++.|+.+.. .+.|.-|
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~ 190 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRY 190 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEE
Confidence 34567788889887665433 0111344444 45444444443445678999999987777654 4778888
Q ss_pred EcCC--Cee----eeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEc-
Q 015490 237 DLAS--SAV----ATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVS- 309 (406)
Q Consensus 237 d~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~s- 309 (406)
++.. +.. ..............++...++.. +++.....+.|..|+.. ++.+..+..+...+++++|-
T Consensus 191 ~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~l-----w~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 191 DLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNL-----WVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred ecCcccCccCCcceEEEccCCCCCCCceEEeCCCCE-----EEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeC
Confidence 7752 111 11111112233446677777762 33333333589999999 88888888776667888875
Q ss_pred CCCCEEEEEe
Q 015490 310 ADGKLLAVGT 319 (406)
Q Consensus 310 p~~~~l~~~~ 319 (406)
|+.+.|++.+
T Consensus 265 ~~~~~L~iTs 274 (307)
T COG3386 265 PDLNTLYITS 274 (307)
T ss_pred CCcCEEEEEe
Confidence 3445554444
No 370
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.72 E-value=0.014 Score=48.67 Aligned_cols=145 Identities=10% Similarity=0.041 Sum_probs=99.1
Q ss_pred CCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEE
Q 015490 179 GTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASC 258 (406)
Q Consensus 179 g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 258 (406)
..+++.|+..+.+.--|..+|+......-. ..|.+-+.- -|.+++.|...|.+++.+.++|.....+.....-.+ ..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg-~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~-~a 99 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG-VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKV-RA 99 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC-ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhcc-ce
Confidence 367888899999999999998876543222 223222222 366899999999999999999977666543322212 33
Q ss_pred EEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc
Q 015490 259 RFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSL 332 (406)
Q Consensus 259 ~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~ 332 (406)
...+++. ++-.++.|+..+..|.++..++...+...+...+.+..|-...|+.+...|.+.-...+..
T Consensus 100 ~~d~~~g------lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 100 QCDFDGG------LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred EEcCCCc------eEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 4555665 3456688999999999999999988877766667777773344555556666655555443
No 371
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.70 E-value=0.045 Score=51.17 Aligned_cols=121 Identities=7% Similarity=0.030 Sum_probs=71.5
Q ss_pred CCCceEEEEccCC-----CeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCc--EEEEEECCCCCEEEEe
Q 015490 113 SDLPYRMAIHPHG-----DGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQ--QLALTFDSEGTIFAAG 185 (406)
Q Consensus 113 ~~~v~~~~~sp~~-----~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~s~~g~~l~~~ 185 (406)
-+.|..+.|.|-+ .+||+-....+.+|.+-....+.-+.+.. ....+...-+ -..+.|+|....|++-
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~s-----QtcEi~e~~pvLpQGCVWHPk~~iL~VL 130 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMS-----QTCEIREPFPVLPQGCVWHPKKAILTVL 130 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceee-----eeeeccCCcccCCCcccccCCCceEEEE
Confidence 3568899999853 24555558899999887543332111100 0011111111 2357899998888876
Q ss_pred eCCCeEEEEeCCCc-ceEeeeeccCCceeEEEEccCCCEEEEEeC-CCCEEEEEc
Q 015490 186 SENGNLRVFKWPSL-EIILNESEAHASVKDLSFSPDGKFLVSLGN-RGPGRVWDL 238 (406)
Q Consensus 186 ~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~-d~~i~iwd~ 238 (406)
.....-.++++... ..+..-....+.|.|.+|.+||++|+++-. .=.-++||-
T Consensus 131 T~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 131 TARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred ecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 66555455666432 223222355668999999999998876633 334567764
No 372
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.66 E-value=0.022 Score=48.47 Aligned_cols=165 Identities=9% Similarity=0.192 Sum_probs=106.6
Q ss_pred ecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCC
Q 015490 110 RTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENG 189 (406)
Q Consensus 110 ~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 189 (406)
.+-+..|.++.|+|+.+.|++..+..-.|..++.. +..++.+.+ .+-...-.+.+..+|++.++--.++
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~-GdlirtiPL----------~g~~DpE~Ieyig~n~fvi~dER~~ 150 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKE-GDLIRTIPL----------TGFSDPETIEYIGGNQFVIVDERDR 150 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecC-CceEEEecc----------cccCChhHeEEecCCEEEEEehhcc
Confidence 34455699999999999999988776677656542 333333322 2234455678888888888877788
Q ss_pred eEEEEeCCCcceEeee---------ecc-CCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeec---ccCC-----
Q 015490 190 NLRVFKWPSLEIILNE---------SEA-HASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPL---AKEN----- 251 (406)
Q Consensus 190 ~i~vwd~~~~~~~~~~---------~~~-~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~---~~~~----- 251 (406)
.+.++.+.....+... ..+ +...-.++|.|..+.|..+-+..-+.||.+..+...... ..+.
T Consensus 151 ~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~ 230 (316)
T COG3204 151 ALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDL 230 (316)
T ss_pred eEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccce
Confidence 8888887654322111 111 336778999999999999988888888887643311111 1111
Q ss_pred -cceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc
Q 015490 252 -DELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW 290 (406)
Q Consensus 252 -~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~ 290 (406)
-..+.++.|++...+ +++.+.+++.+.-.|....
T Consensus 231 f~~DvSgl~~~~~~~~-----LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 231 FVLDVSGLEFNAITNS-----LLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred EeeccccceecCCCCc-----EEEEecCCceEEEEecCCC
Confidence 112556778877765 4455577777777777643
No 373
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.61 E-value=9e-05 Score=60.05 Aligned_cols=145 Identities=17% Similarity=0.048 Sum_probs=84.6
Q ss_pred EEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEee-ecCC
Q 015490 223 FLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQ-VVRE 301 (406)
Q Consensus 223 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~ 301 (406)
.+...+.++.++-++++..+....-.........-+.++ . -+..+..+|.|++|............ ....
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~~---~------~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e 102 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTAS---A------KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEE 102 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeecccC---c------eEEeecccceEEEecCCccchHHHhhhcccc
Confidence 344566788888887765433222111111111112221 1 24556779999999887322211111 1112
Q ss_pred CeEEE-EEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccc-cceEEEEEcCCCCeEEEE--ECCCcEEEEEecCCcC
Q 015490 302 PVSSF-NVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHL-GIVTALAFSYDSRALVSA--SMDSSVRVTVIEDKKK 377 (406)
Q Consensus 302 ~i~~~-~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~s~--s~dg~i~iw~~~~~~~ 377 (406)
.|.++ .--.++.+..+++.||.|+.|++.-.+.+.... .|. .++.....+..+++++.+ |.|..++.|++..-+.
T Consensus 103 ~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g-~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d 181 (238)
T KOG2444|consen 103 SIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG-QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKD 181 (238)
T ss_pred cceeccccccccceeEEeccCCceeeeccccCceeeeec-cccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhc
Confidence 23222 222355688899999999999999888877764 566 556666666666777777 7777788888765443
No 374
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.60 E-value=0.00023 Score=40.49 Aligned_cols=38 Identities=37% Similarity=0.482 Sum_probs=32.5
Q ss_pred eEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEE
Q 015490 333 QVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTV 371 (406)
Q Consensus 333 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~ 371 (406)
+....+. .|...|.++.|.+++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLK-GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEE-ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4455554 6888999999999999999999999999996
No 375
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.54 E-value=0.00041 Score=39.40 Aligned_cols=38 Identities=34% Similarity=0.490 Sum_probs=33.0
Q ss_pred eEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 015490 291 KRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIID 328 (406)
Q Consensus 291 ~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d 328 (406)
+....+..|...+.++.|+++++++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44566667788899999999999999999999999996
No 376
>PRK10115 protease 2; Provisional
Probab=97.51 E-value=0.09 Score=52.34 Aligned_cols=196 Identities=6% Similarity=0.012 Sum_probs=104.6
Q ss_pred cEEEEEECCCCCEEEEeeC-----CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCC------CCEEEEE
Q 015490 169 QQLALTFDSEGTIFAAGSE-----NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNR------GPGRVWD 237 (406)
Q Consensus 169 ~v~~~~~s~~g~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d------~~i~iwd 237 (406)
.+..+.|||||++|+.+.. ...|++.|+.++..+....... . ..++|++|++.|+....+ ..|+.++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~-~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV-E-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc-c-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 4567889999998887633 3368899998876432222221 2 469999999877766542 3577788
Q ss_pred cCCC--eeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC--CceEEEEeeecCCCeEEEEEcCCCC
Q 015490 238 LASS--AVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT--TWKRIRTKQVVREPVSSFNVSADGK 313 (406)
Q Consensus 238 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~--~~~~~~~~~~~~~~i~~~~~sp~~~ 313 (406)
+.++ +....+.............+.+++. +++......++.+.+++.. .+.....+.........+. +.. .
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~---l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~ 280 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHY---VVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQ-H 280 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCE---EEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCC-C
Confidence 8877 3233333222222212333335553 3455566667889999853 3332222222222223332 222 3
Q ss_pred EEEEEeC----CCcEEEEECCCceEEEEeeccc-c-cceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490 314 LLAVGTA----SGDISIIDSSSLQVRTAVKKAH-L-GIVTALAFSYDSRALVSASMDSSVRVTVIE 373 (406)
Q Consensus 314 ~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~-~-~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~ 373 (406)
.+..-+. ...|...++.+......+. .+ . ..+..+.++ .+.++++...+|.-+++-+.
T Consensus 281 ~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~-~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 281 RFYLRSNRHGKNFGLYRTRVRDEQQWEELI-PPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred EEEEEEcCCCCCceEEEecCCCcccCeEEE-CCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 3333333 2234444554211112232 23 2 367788887 33556666777776666554
No 377
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.47 E-value=0.052 Score=46.02 Aligned_cols=209 Identities=13% Similarity=0.068 Sum_probs=121.9
Q ss_pred cEEEEEECCCC-CEEEEeeCCCe-EEEEeCCCcceEeeeeccCC--ceeEEEEccCCCEEEEEeC-----CCCEEEEEcC
Q 015490 169 QQLALTFDSEG-TIFAAGSENGN-LRVFKWPSLEIILNESEAHA--SVKDLSFSPDGKFLVSLGN-----RGPGRVWDLA 239 (406)
Q Consensus 169 ~v~~~~~s~~g-~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~s~s~-----d~~i~iwd~~ 239 (406)
....++|+|.- .-++.+-.-|+ ..++|..+.+....+....+ -.-.=.|||||.+|...-. .|.|-|||.+
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 34567888854 55666666555 56888887776655544333 2234568999998886643 3678999997
Q ss_pred CCe-eeeecccCCcceEEEEEEEcCCCCceEEEEEEEcC----------------CCcEEEEEeCCCceEEEEeee----
Q 015490 240 SSA-VATPLAKENDELFASCRFSPLNNEDYVLYIAAITD----------------RGASIVTWNTTTWKRIRTKQV---- 298 (406)
Q Consensus 240 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~i~~~d~~~~~~~~~~~~---- 298 (406)
.+- .+..+..+ +-....+.|.+|++. ++++.++ ..-.+.+.|..++..+.+...
T Consensus 149 ~~fqrvgE~~t~-GiGpHev~lm~DGrt----lvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l 223 (366)
T COG3490 149 EGFQRVGEFSTH-GIGPHEVTLMADGRT----LVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASL 223 (366)
T ss_pred cccceecccccC-CcCcceeEEecCCcE----EEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhh
Confidence 532 23344433 233457889999984 2333221 122455666666665544332
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCc-----EEEEECCCceEEEEeec------ccccceEEEEEcCCCCeEEEEE-CCCc
Q 015490 299 VREPVSSFNVSADGKLLAVGTASGD-----ISIIDSSSLQVRTAVKK------AHLGIVTALAFSYDSRALVSAS-MDSS 366 (406)
Q Consensus 299 ~~~~i~~~~~sp~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~------~~~~~v~~~~~sp~~~~l~s~s-~dg~ 366 (406)
+...|..++..+||+.++.+-..|. -.+=-...++.+..+.- .....|-+++.+.+..+++..+ ..+.
T Consensus 224 ~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~ 303 (366)
T COG3490 224 RQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNR 303 (366)
T ss_pred hhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCe
Confidence 2456888888888876665443321 11111223333333320 1234577888876555555444 5567
Q ss_pred EEEEEecCCcCCCCch
Q 015490 367 VRVTVIEDKKKSGGLN 382 (406)
Q Consensus 367 i~iw~~~~~~~~~~~~ 382 (406)
..+||..++..+..-+
T Consensus 304 ~vi~da~tG~vv~~a~ 319 (366)
T COG3490 304 AVIWDAATGAVVSEAA 319 (366)
T ss_pred EEEEEcCCCcEEeccc
Confidence 8899999998765443
No 378
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.43 E-value=0.052 Score=46.14 Aligned_cols=162 Identities=18% Similarity=0.188 Sum_probs=106.2
Q ss_pred ceeEEEEccCCCEEEEEeCCC--CEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC
Q 015490 211 SVKDLSFSPDGKFLVSLGNRG--PGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT 288 (406)
Q Consensus 211 ~i~~~~~s~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~ 288 (406)
--..+.|..+|.++-+.+.-| .|+.+|+.+++............-..++...+. ++. ..-.++...+||..
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~-----l~q--LTWk~~~~f~yd~~ 118 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDK-----LYQ--LTWKEGTGFVYDPN 118 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTE-----EEE--EESSSSEEEEEETT
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCE-----EEE--EEecCCeEEEEccc
Confidence 556788877888888887765 699999999988776655444434455555332 222 23578999999999
Q ss_pred CceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecc-cc---cceEEEEEcCCCCeEEEEECC
Q 015490 289 TWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKA-HL---GIVTALAFSYDSRALVSASMD 364 (406)
Q Consensus 289 ~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~---~~v~~~~~sp~~~~l~s~s~d 364 (406)
+.+.+.++... +.=..++ .|++.|+.......++++|..+.+....+.-. .. ..++.+.|- +|...|-.=..
T Consensus 119 tl~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~t 194 (264)
T PF05096_consen 119 TLKKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQT 194 (264)
T ss_dssp TTEEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTS
T ss_pred cceEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCC
Confidence 99999888765 3446777 45777777777788999999888777766411 11 235667776 56666655566
Q ss_pred CcEEEEEecCCcCCCCchH
Q 015490 365 SSVRVTVIEDKKKSGGLNL 383 (406)
Q Consensus 365 g~i~iw~~~~~~~~~~~~~ 383 (406)
..|..-|..+|+.++.+.+
T Consensus 195 d~I~~Idp~tG~V~~~iDl 213 (264)
T PF05096_consen 195 DRIVRIDPETGKVVGWIDL 213 (264)
T ss_dssp SEEEEEETTT-BEEEEEE-
T ss_pred CeEEEEeCCCCeEEEEEEh
Confidence 6788888888888776655
No 379
>PRK10115 protease 2; Provisional
Probab=97.41 E-value=0.17 Score=50.43 Aligned_cols=241 Identities=11% Similarity=0.042 Sum_probs=119.1
Q ss_pred CceEEEEccCCCeEEEEe----cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCC--
Q 015490 115 LPYRMAIHPHGDGIICAL----QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSEN-- 188 (406)
Q Consensus 115 ~v~~~~~sp~~~~l~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-- 188 (406)
.+..+.|+||+++|+.+. +....|+..+..++..+. ..+.... ..++|++|++.|+....+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~-----------~~i~~~~--~~~~w~~D~~~~~y~~~~~~ 194 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYP-----------ELLDNVE--PSFVWANDSWTFYYVRKHPV 194 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCC-----------ccccCcc--eEEEEeeCCCEEEEEEecCC
Confidence 456788999999999875 223456666655432110 0111111 458999999877665432
Q ss_pred ----CeEEEEeCCCc--ceEeeeeccCCcee-EEEEccCCCEEEEEeC---CCCEEEEEcC--CCeeeeecccCCcceEE
Q 015490 189 ----GNLRVFKWPSL--EIILNESEAHASVK-DLSFSPDGKFLVSLGN---RGPGRVWDLA--SSAVATPLAKENDELFA 256 (406)
Q Consensus 189 ----g~i~vwd~~~~--~~~~~~~~~~~~i~-~~~~s~~~~~l~s~s~---d~~i~iwd~~--~~~~~~~~~~~~~~~~~ 256 (406)
..|+.+++.++ +....+........ .+..+.++++++..+. ++.+.+++.. ++.....+....+...
T Consensus 195 ~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~- 273 (686)
T PRK10115 195 TLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEY- 273 (686)
T ss_pred CCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEE-
Confidence 36888888877 33333333233233 3333447887665433 4578888843 3332222222222222
Q ss_pred EEEEEcCCCCceEEEEEEE-cCCCcEEEEEeCCCceEEEEeeec-C-CCeEEEEEcCCCCEEEEEeCCCcE--EEEECCC
Q 015490 257 SCRFSPLNNEDYVLYIAAI-TDRGASIVTWNTTTWKRIRTKQVV-R-EPVSSFNVSADGKLLAVGTASGDI--SIIDSSS 331 (406)
Q Consensus 257 ~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~-~-~~i~~~~~sp~~~~l~~~~~dg~i--~i~d~~~ 331 (406)
.+ ...+. .+++... +.....|...++........+..+ . ..+..+.++ .+.++++...+|.- .+++..+
T Consensus 274 ~~--~~~~~---~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~ 347 (686)
T PRK10115 274 SL--DHYQH---RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKT 347 (686)
T ss_pred EE--EeCCC---EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCC
Confidence 11 12222 2333332 234455655566521222333333 2 367778877 33455555556654 4455443
Q ss_pred ceEEEEeecccccceEEEEEc--CCC-CeEEEEE---CCCcEEEEEecCCc
Q 015490 332 LQVRTAVKKAHLGIVTALAFS--YDS-RALVSAS---MDSSVRVTVIEDKK 376 (406)
Q Consensus 332 ~~~~~~~~~~~~~~v~~~~~s--p~~-~~l~s~s---~dg~i~iw~~~~~~ 376 (406)
+. +..+.......+..+.++ +++ .++++.+ .-+.+..+|+.+++
T Consensus 348 ~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 348 RE-VIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred Cc-eEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 33 333321112223333444 333 3444443 33678888877654
No 380
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.39 E-value=0.019 Score=41.49 Aligned_cols=99 Identities=15% Similarity=0.258 Sum_probs=64.2
Q ss_pred ceEEEEcc---CC-CeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCe
Q 015490 116 PYRMAIHP---HG-DGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGN 190 (406)
Q Consensus 116 v~~~~~sp---~~-~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 190 (406)
|++|++.. || ..|++|+ |..+++|. ....+..+...+.|+++.-... ..|+.+..+|+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~----------------~~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGT 64 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK----------------GDEIVAEITETDKVTSLCSLGG-GRFAYALANGT 64 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe----------------CCcEEEEEecccceEEEEEcCC-CEEEEEecCCE
Confidence 56666654 33 3577776 88888865 3445555666778888887766 56889999999
Q ss_pred EEEEeCCCcceEeeeeccCCceeEEEEcc---CCC-EEEEEeCCCCEE
Q 015490 191 LRVFKWPSLEIILNESEAHASVKDLSFSP---DGK-FLVSLGNRGPGR 234 (406)
Q Consensus 191 i~vwd~~~~~~~~~~~~~~~~i~~~~~s~---~~~-~l~s~s~d~~i~ 234 (406)
|-+|+- ...+......+ .+.++++.. ||. .|++|-.+|.|-
T Consensus 65 VGvY~~--~~RlWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 65 VGVYDR--SQRLWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEeC--cceeeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 999984 23333443333 356665543 332 678887788764
No 381
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.37 E-value=0.099 Score=46.97 Aligned_cols=179 Identities=17% Similarity=0.186 Sum_probs=97.2
Q ss_pred CCEEEEeeC----------CCeEEEEeCCCc----ceEee--eeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCe
Q 015490 179 GTIFAAGSE----------NGNLRVFKWPSL----EIILN--ESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSA 242 (406)
Q Consensus 179 g~~l~~~~~----------dg~i~vwd~~~~----~~~~~--~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~ 242 (406)
..+|++|+. .|.|.++++... ..+.. .....++|++++-- +++ |+++. .+.|.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence 467777743 289999999874 12221 22345688888866 344 55444 4689999998877
Q ss_pred -eeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEE--EeCCCceEEEEe-eecCCCeEEEEEcCCCCEEEEE
Q 015490 243 -VATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVT--WNTTTWKRIRTK-QVVREPVSSFNVSADGKLLAVG 318 (406)
Q Consensus 243 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~--~d~~~~~~~~~~-~~~~~~i~~~~~sp~~~~l~~~ 318 (406)
....-..+....+.++... ++. + +.++....+.+ |+....+....- ......++++.|-++++.++++
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~--~~~-----I-~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~ 190 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVF--KNY-----I-LVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVG 190 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEE--TTE-----E-EEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEE
T ss_pred cchhhheecceEEEEEEecc--ccE-----E-EEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEE
Confidence 3333222222345555444 332 2 23333444444 455332222111 1223557888888666799999
Q ss_pred eCCCcEEEEECCC-------c--e--EEEEeecccccceEEE---EEcCC--CC------eEEEEECCCcEEEE
Q 015490 319 TASGDISIIDSSS-------L--Q--VRTAVKKAHLGIVTAL---AFSYD--SR------ALVSASMDSSVRVT 370 (406)
Q Consensus 319 ~~dg~i~i~d~~~-------~--~--~~~~~~~~~~~~v~~~---~~sp~--~~------~l~s~s~dg~i~iw 370 (406)
..+|.+.++.... + + ....+. ....|+++ ++.|. +. .++.++.+|.|.+.
T Consensus 191 D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~--lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 191 DKDGNLFVLRYNPEIPNSRDGDPKLERISSFH--LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp ETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE---SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred cCCCeEEEEEECCCCcccccccccceeEEEEE--CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 9999999998752 1 2 223332 34557777 54552 22 37788899998844
No 382
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.36 E-value=0.087 Score=46.12 Aligned_cols=225 Identities=13% Similarity=0.155 Sum_probs=120.7
Q ss_pred cCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceE
Q 015490 123 PHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEII 202 (406)
Q Consensus 123 p~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~ 202 (406)
..++.|+.|.+..+.++.. ...... ........|..+...++-+.+++-+ |+.++++++......
T Consensus 5 ~~~~~L~vGt~~Gl~~~~~--~~~~~~------------~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~ 69 (275)
T PF00780_consen 5 SWGDRLLVGTEDGLYVYDL--SDPSKP------------TRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPV 69 (275)
T ss_pred cCCCEEEEEECCCEEEEEe--cCCccc------------eeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccc
Confidence 3567888888666666555 111111 1111223388899988777666654 599999998654433
Q ss_pred eee--------------eccCCceeEEE--EccCCCEEEEEeCCCCEEEEEcCCC-----eeeeecccCCcceEEEEEEE
Q 015490 203 LNE--------------SEAHASVKDLS--FSPDGKFLVSLGNRGPGRVWDLASS-----AVATPLAKENDELFASCRFS 261 (406)
Q Consensus 203 ~~~--------------~~~~~~i~~~~--~s~~~~~l~s~s~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~ 261 (406)
... ......+..++ -...+...+.......|.+|..... +..+.+... ..+..++|.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp--~~~~~i~~~ 147 (275)
T PF00780_consen 70 STSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP--DPPSSIAFL 147 (275)
T ss_pred cccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC--CCcEEEEEe
Confidence 211 11112344444 1123333344444558888887653 344444433 456788888
Q ss_pred cCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC------------CCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 015490 262 PLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR------------EPVSSFNVSADGKLLAVGTASGDISIIDS 329 (406)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~------------~~i~~~~~sp~~~~l~~~~~dg~i~i~d~ 329 (406)
.+. ++++. .....+.|+.++.....+.... .++..+... ++.+|++- +..-.+.|.
T Consensus 148 ~~~------i~v~~---~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~ 215 (275)
T PF00780_consen 148 GNK------ICVGT---SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK 215 (275)
T ss_pred CCE------EEEEe---CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC
Confidence 332 12222 4557888888765543332111 223333333 45566543 333344454
Q ss_pred CCceEEE--EeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCch
Q 015490 330 SSLQVRT--AVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLN 382 (406)
Q Consensus 330 ~~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~ 382 (406)
.|++.+ .+. -...+.++++. ..+|+..+. +.|.||++.+++.+..++
T Consensus 216 -~G~~~r~~~i~--W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 216 -NGEPSRKSTIQ--WSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIP 264 (275)
T ss_pred -CCCcCcccEEE--cCCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence 344333 222 33455666664 457777665 559999999998765543
No 383
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.0063 Score=55.65 Aligned_cols=145 Identities=12% Similarity=0.139 Sum_probs=96.4
Q ss_pred EEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEE-EEEEEcCCCcEEEEEeCCCce--EEEEeeec-
Q 015490 224 LVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVL-YIAAITDRGASIVTWNTTTWK--RIRTKQVV- 299 (406)
Q Consensus 224 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~- 299 (406)
+.++.....++-.|++.|+.+.....+.. |.-+.+.|+.+...+. --+..|-.+..|.-||++-.. .+...+.|
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d--i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD--INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC--cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 33455566788899999999988876655 5566777765431110 012334457889999987422 22222222
Q ss_pred ---CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490 300 ---REPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIE 373 (406)
Q Consensus 300 ---~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~ 373 (406)
.....|.+-..+| +|++|+.+|.|++||. .+....+...+...+|..+..+.||++++.. .+..+.+-++.
T Consensus 427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~t~ 500 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLIDTL 500 (644)
T ss_pred cccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEEEe
Confidence 2344555555555 8999999999999997 5554444444888999999999999988754 46667776653
No 384
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.21 E-value=0.053 Score=46.27 Aligned_cols=161 Identities=12% Similarity=0.095 Sum_probs=104.6
Q ss_pred eccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEE
Q 015490 206 SEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTW 285 (406)
Q Consensus 206 ~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ 285 (406)
.+.+..+.++.|+|+.+.|++......-.|+=-..|+.+.+++...-.....+.+..++. ++.+...+..++++
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~------fvi~dER~~~l~~~ 155 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQ------FVIVDERDRALYLF 155 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCE------EEEEehhcceEEEE
Confidence 444557999999999999999988888888888889998888765444455677777776 34555677777777
Q ss_pred eCCCceEEEE-----ee-----ecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEE--eeccc-------ccce
Q 015490 286 NTTTWKRIRT-----KQ-----VVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTA--VKKAH-------LGIV 346 (406)
Q Consensus 286 d~~~~~~~~~-----~~-----~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~-------~~~v 346 (406)
.+.....+.. +. ........++|+|....|..+-+..-+.||.......... ....+ -..|
T Consensus 156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence 6554322111 11 1134578899999998888888888788877653221110 00011 1246
Q ss_pred EEEEEcCC-CCeEEEEECCCcEEEEEe
Q 015490 347 TALAFSYD-SRALVSASMDSSVRVTVI 372 (406)
Q Consensus 347 ~~~~~sp~-~~~l~s~s~dg~i~iw~~ 372 (406)
.++.|.+. +..|+-+..++.+.-.|.
T Consensus 236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~ 262 (316)
T COG3204 236 SGLEFNAITNSLLVLSDESRRLLEVDL 262 (316)
T ss_pred ccceecCCCCcEEEEecCCceEEEEec
Confidence 67788864 444555555555555554
No 385
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.028 Score=53.84 Aligned_cols=181 Identities=11% Similarity=0.147 Sum_probs=89.1
Q ss_pred cCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEee-e--eccCCceeEEEEccCCCEEEEEeCCCCEEEE-EcCCCe
Q 015490 167 VGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILN-E--SEAHASVKDLSFSPDGKFLVSLGNRGPGRVW-DLASSA 242 (406)
Q Consensus 167 ~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~-~--~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iw-d~~~~~ 242 (406)
++.+..+.|+.+..++ +...+|++++|++-....... . ......|..+.+..+| ++.-..+|.+.+- +....
T Consensus 83 ~~~lI~mgWs~~eeLI-~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~- 158 (829)
T KOG2280|consen 83 HGELIGMGWSDDEELI-CVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG--VAVLTVSGQVILINGVEEP- 158 (829)
T ss_pred CCCeeeecccCCceEE-EEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--eEEEecCCcEEEEcCCCcc-
Confidence 3578899999886655 557899999999853322211 1 1112245555555555 3334444444433 33221
Q ss_pred eeeecccCCcceEEEEEEE--cCCCCceEEEEEEEcCCCcEEEEEeCCCc-eEEEEeeecCCCeEEEEEcCCCCEEEEEe
Q 015490 243 VATPLAKENDELFASCRFS--PLNNEDYVLYIAAITDRGASIVTWNTTTW-KRIRTKQVVREPVSSFNVSADGKLLAVGT 319 (406)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 319 (406)
...+++.-........+|. +++.....+ +...-..+ ..++..... .....+......+..+..||+.++|+.-.
T Consensus 159 ~~~~~~diP~~~~~~~~Wt~~~~~~~~~~l--l~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt 235 (829)
T KOG2280|consen 159 KLRKMPDIPYNELPKSCWTVFQPHRQSTIL--LDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYT 235 (829)
T ss_pred hhhhCCCCCCccCCCcceeEecCCCcceeE--Eeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEe
Confidence 1222221111111112222 222221111 11100000 011111111 11122222235678899999999999999
Q ss_pred CCCcEEEEECCCceEEEEeecccccceEEEEEcCC
Q 015490 320 ASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYD 354 (406)
Q Consensus 320 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~ 354 (406)
.+|.|.+-+.+..+....+......+...++|..+
T Consensus 236 ~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgn 270 (829)
T KOG2280|consen 236 ETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGN 270 (829)
T ss_pred cCCcEEEEecchhhhhhccCCCCCCchHhceeecC
Confidence 99999999988777666654223333335666543
No 386
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.17 E-value=0.31 Score=48.53 Aligned_cols=175 Identities=16% Similarity=0.212 Sum_probs=109.5
Q ss_pred eEEEEeCCCcceEeeeeccCC----ceeEEEEccC-CCEEEEEeC----------CCCEEEEEcCCCeeeeeccc-CCcc
Q 015490 190 NLRVFKWPSLEIILNESEAHA----SVKDLSFSPD-GKFLVSLGN----------RGPGRVWDLASSAVATPLAK-ENDE 253 (406)
Q Consensus 190 ~i~vwd~~~~~~~~~~~~~~~----~i~~~~~s~~-~~~l~s~s~----------d~~i~iwd~~~~~~~~~~~~-~~~~ 253 (406)
.++++|-++.+......-... .|.++.|..| +.++++|.. .|.|.+|.+..++.+..+.. .-.+
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G 830 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG 830 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence 367777666655443322211 4556668877 667777753 47788888877433333221 1112
Q ss_pred eEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC--CC
Q 015490 254 LFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDS--SS 331 (406)
Q Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~--~~ 331 (406)
.+.++ ..-+.+ +++ +-+..|++|+..+.+.++.-..+..++..+...-.|..+++|..-+++.+... ..
T Consensus 831 av~aL--~~fngk----llA---~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 831 AVYAL--VEFNGK----LLA---GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred ceeeh--hhhCCe----EEE---ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence 22222 222221 122 33678999999988777766667788999999999999999998887766544 44
Q ss_pred ceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED 374 (406)
Q Consensus 332 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~ 374 (406)
+........-+..+.+++.+-.+..++ -+..+|.+.+-..++
T Consensus 902 g~f~evArD~~p~Wmtaveil~~d~yl-gae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 902 GNFEEVARDYNPNWMTAVEILDDDTYL-GAENSGNLFTVRKDS 943 (1096)
T ss_pred CceEEeehhhCccceeeEEEecCceEE-eecccccEEEEEecC
Confidence 445444444577888888887665544 455678777776653
No 387
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.16 E-value=0.13 Score=44.28 Aligned_cols=149 Identities=18% Similarity=0.124 Sum_probs=89.5
Q ss_pred CcEEEEEECCCCCEEEEee---CCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEE-cCCCee
Q 015490 168 GQQLALTFDSEGTIFAAGS---ENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWD-LASSAV 243 (406)
Q Consensus 168 ~~v~~~~~s~~g~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd-~~~~~~ 243 (406)
..+...+++++++.+|... ....++++.. +....... ....+....|++++...+....+...+++. ..++..
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 3678899999998777655 2334555543 33332322 222688899999987666666666666663 333322
Q ss_pred e-eecccCCcc-eEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC---Cc--e----EEEEeeecCCCeEEEEEcCCC
Q 015490 244 A-TPLAKENDE-LFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT---TW--K----RIRTKQVVREPVSSFNVSADG 312 (406)
Q Consensus 244 ~-~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~---~~--~----~~~~~~~~~~~i~~~~~sp~~ 312 (406)
. ..+...... .|..+.++|+|.+ +.++.....++.|.+--+. .+ . ...........+..+.|.+++
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~R---vA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTR---VAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS 177 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcE---EEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC
Confidence 2 222222111 7899999999997 3344444556777776432 22 1 111111223578999999999
Q ss_pred CEEEEEeCCC
Q 015490 313 KLLAVGTASG 322 (406)
Q Consensus 313 ~~l~~~~~dg 322 (406)
.+++.+...+
T Consensus 178 ~L~V~~~~~~ 187 (253)
T PF10647_consen 178 TLVVLGRSAG 187 (253)
T ss_pred EEEEEeCCCC
Confidence 8887776643
No 388
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.11 E-value=0.057 Score=39.09 Aligned_cols=65 Identities=26% Similarity=0.266 Sum_probs=47.2
Q ss_pred EEEEEEC---CCC-CEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEc
Q 015490 170 QLALTFD---SEG-TIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDL 238 (406)
Q Consensus 170 v~~~~~s---~~g-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~ 238 (406)
|+++++. .|| +.|++|+.|..|++|+-+ +.+..+.. ...|.+++-... ..++.+..+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 4455544 344 689999999999999843 45555443 446788877665 56999999999999975
No 389
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.11 E-value=0.18 Score=48.49 Aligned_cols=194 Identities=8% Similarity=0.006 Sum_probs=117.2
Q ss_pred CCEEEEeeCCCeEEEEeCCCcceEeeeeccCC-cee----------EEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeec
Q 015490 179 GTIFAAGSENGNLRVFKWPSLEIILNESEAHA-SVK----------DLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPL 247 (406)
Q Consensus 179 g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~----------~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 247 (406)
+..+++++.++.|.-+|..+|+.+-.+..... .+. .+++. +..++.++.|+.+.-.|.++|+.+-..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 34566667778899999999988766543211 111 12222 346777888999999999999987655
Q ss_pred ccCCcc---eEEE-EEEEcCCCCceEEEEEEEc---CCCcEEEEEeCCCceEEEEeeecCC-------------------
Q 015490 248 AKENDE---LFAS-CRFSPLNNEDYVLYIAAIT---DRGASIVTWNTTTWKRIRTKQVVRE------------------- 301 (406)
Q Consensus 248 ~~~~~~---~~~~-~~~~~~~~~~~~l~~~~~~---~~~~~i~~~d~~~~~~~~~~~~~~~------------------- 301 (406)
...... .+.+ .... ++ .+++...+ ..++.|.-+|.++++.+-.+..-..
T Consensus 147 ~~~~~~~~~~~tssP~v~-~g----~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~ 221 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVV-KG----KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAK 221 (527)
T ss_pred ccccccccccccCCcEEE-CC----EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccC
Confidence 432110 1111 1111 22 12222221 1368899999999887655432110
Q ss_pred -------------CeEEEEEcCCCCEEEEEeCC-----C-----------cEEEEECCCceEEEEeeccccc--------
Q 015490 302 -------------PVSSFNVSADGKLLAVGTAS-----G-----------DISIIDSSSLQVRTAVKKAHLG-------- 344 (406)
Q Consensus 302 -------------~i~~~~~sp~~~~l~~~~~d-----g-----------~i~i~d~~~~~~~~~~~~~~~~-------- 344 (406)
.-..+++.|...+++.+..+ + .|.-.|+++++..-.++..|..
T Consensus 222 tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~ 301 (527)
T TIGR03075 222 TWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVN 301 (527)
T ss_pred CCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCC
Confidence 11245777777777766522 2 5777899999988777532221
Q ss_pred ceEEEEEcCCCC---eEEEEECCCcEEEEEecCCcCCC
Q 015490 345 IVTALAFSYDSR---ALVSASMDSSVRVTVIEDKKKSG 379 (406)
Q Consensus 345 ~v~~~~~sp~~~---~l~s~s~dg~i~iw~~~~~~~~~ 379 (406)
...=+....+|+ .++.+..+|.+++.|-.+++.+.
T Consensus 302 ~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 302 EMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred CcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence 111122224666 77889999999999999998753
No 390
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.05 E-value=0.13 Score=42.48 Aligned_cols=172 Identities=13% Similarity=0.101 Sum_probs=92.1
Q ss_pred eEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCC---------CeEEEEeCC
Q 015490 127 GIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSEN---------GNLRVFKWP 197 (406)
Q Consensus 127 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d---------g~i~vwd~~ 197 (406)
..+++......|-+|+.......-.- +--.++........+.-..+|+|++++-.-.| |.++.|-..
T Consensus 72 ~~~v~~G~kf~i~nwd~~~~~a~v~~----t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~ 147 (310)
T KOG4499|consen 72 EFAVGCGSKFVIVNWDGVSESAKVYR----TLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG 147 (310)
T ss_pred eEEEeecceEEEEEcccccceeeeee----eccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccC
Confidence 44555566667777874321110000 00011122223455667789999985432222 334444321
Q ss_pred CcceEeeeeccCCceeEEEEccCCCEEEEE-eCCCCEEEEE--cCCCee-----eeeccc---CCcceEEEEEEEcCCCC
Q 015490 198 SLEIILNESEAHASVKDLSFSPDGKFLVSL-GNRGPGRVWD--LASSAV-----ATPLAK---ENDELFASCRFSPLNNE 266 (406)
Q Consensus 198 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-s~d~~i~iwd--~~~~~~-----~~~~~~---~~~~~~~~~~~~~~~~~ 266 (406)
..+..+...-.--+.++|+.+.+.+... +.+-+|.-|| ..+|.. +..+.. ........++...+|.
T Consensus 148 --h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~- 224 (310)
T KOG4499|consen 148 --HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN- 224 (310)
T ss_pred --CCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-
Confidence 1111122222233578999888766655 4566676677 445432 222221 1111122344444444
Q ss_pred ceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcC
Q 015490 267 DYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSA 310 (406)
Q Consensus 267 ~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp 310 (406)
+++++ -..++|...|..+++.+.++......++++||--
T Consensus 225 ---L~Va~--~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 225 ---LYVAT--FNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ---EEEEE--ecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 33333 4578999999999999999999999999999974
No 391
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.04 E-value=0.0029 Score=38.06 Aligned_cols=34 Identities=15% Similarity=0.340 Sum_probs=29.9
Q ss_pred cCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcce
Q 015490 167 VGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEI 201 (406)
Q Consensus 167 ~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~ 201 (406)
...|.+++|+|...++|.++.+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 356899999999999999999999999998 5543
No 392
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.94 E-value=0.22 Score=42.94 Aligned_cols=137 Identities=15% Similarity=0.118 Sum_probs=85.2
Q ss_pred CceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEE
Q 015490 115 LPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLR 192 (406)
Q Consensus 115 ~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~ 192 (406)
.+.+.++++++..+++.. ++...||.......... .. ....+..-.|++++...+....+...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~-------------~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~ 90 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRP-------------VL-TGGSLTRPSWDPDGWVWTVDDGSGGVR 90 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCccee-------------ec-cCCccccccccCCCCEEEEEcCCCceE
Confidence 678999999999888776 67778888765321110 01 223667789999988777766666666
Q ss_pred EEe-CCCcceEe-eeec--cCCceeEEEEccCCCEEEEEe---CCCCEEEEEcC---CCee--e---eecccCCcceEEE
Q 015490 193 VFK-WPSLEIIL-NESE--AHASVKDLSFSPDGKFLVSLG---NRGPGRVWDLA---SSAV--A---TPLAKENDELFAS 257 (406)
Q Consensus 193 vwd-~~~~~~~~-~~~~--~~~~i~~~~~s~~~~~l~s~s---~d~~i~iwd~~---~~~~--~---~~~~~~~~~~~~~ 257 (406)
++. ..++.... .+.. ....|..+.+||||..++... .++.|.+--+. .+.. + ..+.......+..
T Consensus 91 ~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~ 170 (253)
T PF10647_consen 91 VVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTD 170 (253)
T ss_pred EEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCccee
Confidence 664 23332221 1111 112799999999999888776 34667666543 2201 0 1111122345788
Q ss_pred EEEEcCCC
Q 015490 258 CRFSPLNN 265 (406)
Q Consensus 258 ~~~~~~~~ 265 (406)
+.|.+++.
T Consensus 171 v~W~~~~~ 178 (253)
T PF10647_consen 171 VAWSDDST 178 (253)
T ss_pred eeecCCCE
Confidence 99999987
No 393
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.89 E-value=0.54 Score=47.21 Aligned_cols=200 Identities=9% Similarity=0.042 Sum_probs=115.9
Q ss_pred CCEEEEeeCCCeEEEEeCCCcceEeeeeccCC--------ceeEEEEcc----------------CCCEEEEEeCCCCEE
Q 015490 179 GTIFAAGSENGNLRVFKWPSLEIILNESEAHA--------SVKDLSFSP----------------DGKFLVSLGNRGPGR 234 (406)
Q Consensus 179 g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--------~i~~~~~s~----------------~~~~l~s~s~d~~i~ 234 (406)
+..++.++.++.|.-.|..+|+.+-++..... ..+.+++.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 34566667778888888888887766543221 112233321 234788888999999
Q ss_pred EEEcCCCeeeeecccCCcc-----------eEEEEEEEc--CCCCceEEEEEEEc-------CCCcEEEEEeCCCceEEE
Q 015490 235 VWDLASSAVATPLAKENDE-----------LFASCRFSP--LNNEDYVLYIAAIT-------DRGASIVTWNTTTWKRIR 294 (406)
Q Consensus 235 iwd~~~~~~~~~~~~~~~~-----------~~~~~~~~~--~~~~~~~l~~~~~~-------~~~~~i~~~d~~~~~~~~ 294 (406)
-.|.++|+....+.....- ....+.-.| .+. .+++-... ..+|.|+-+|.++++.+-
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g---~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGT---TVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECC---EEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 9999999988665321100 000000011 011 12222111 126889999999999877
Q ss_pred Eeeec---------C---------CCeEEEEEcCCCCEEEEEe------------------CCCcEEEEECCCceEEEEe
Q 015490 295 TKQVV---------R---------EPVSSFNVSADGKLLAVGT------------------ASGDISIIDSSSLQVRTAV 338 (406)
Q Consensus 295 ~~~~~---------~---------~~i~~~~~sp~~~~l~~~~------------------~dg~i~i~d~~~~~~~~~~ 338 (406)
.+... . ..-..++++++...++.+. ..+.|.-.|.++++..-.+
T Consensus 351 ~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~ 430 (764)
T TIGR03074 351 AWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVF 430 (764)
T ss_pred EEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEe
Confidence 66421 0 0113455666555554432 1345777888899888777
Q ss_pred eccccc--------ceEEEEEcC-CCC---eEEEEECCCcEEEEEecCCcCCCCc
Q 015490 339 KKAHLG--------IVTALAFSY-DSR---ALVSASMDSSVRVTVIEDKKKSGGL 381 (406)
Q Consensus 339 ~~~~~~--------~v~~~~~sp-~~~---~l~s~s~dg~i~iw~~~~~~~~~~~ 381 (406)
+..|.+ ...=+.+.. +|+ .++.++.+|.+++.|-++++.+-.+
T Consensus 431 Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 431 QTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred cccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 543321 011112222 553 7889999999999999999876543
No 394
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.87 E-value=0.24 Score=42.22 Aligned_cols=189 Identities=15% Similarity=0.200 Sum_probs=113.5
Q ss_pred eeccccc--CcEEEEEECCCCCEEEEeeCCC--eEEEEeCCCcceEeeeeccCC-ceeEEEEccCCCEEEEEeCCCCEEE
Q 015490 161 LSQLENV--GQQLALTFDSEGTIFAAGSENG--NLRVFKWPSLEIILNESEAHA-SVKDLSFSPDGKFLVSLGNRGPGRV 235 (406)
Q Consensus 161 ~~~~~~~--~~v~~~~~s~~g~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~s~s~d~~i~i 235 (406)
+..+.|. ..-..+.|..+|.++-+.+.-| .|+.+|+.+++......-... ---.++... ++...-.=.++...+
T Consensus 36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~ 114 (264)
T PF05096_consen 36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFV 114 (264)
T ss_dssp EEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEE
T ss_pred EEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEE
Confidence 3444454 3345788877888887777665 799999999987755543332 233445443 333333446888999
Q ss_pred EEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC-----CCeEEEEEcC
Q 015490 236 WDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR-----EPVSSFNVSA 310 (406)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----~~i~~~~~sp 310 (406)
||..+.+.+.++...... ..++ .++.. + ..++....|+.+|..+.+..+.+.... ..+..+.|-
T Consensus 115 yd~~tl~~~~~~~y~~EG--WGLt--~dg~~-----L-i~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i- 183 (264)
T PF05096_consen 115 YDPNTLKKIGTFPYPGEG--WGLT--SDGKR-----L-IMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI- 183 (264)
T ss_dssp EETTTTEEEEEEE-SSS----EEE--ECSSC-----E-EEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-
T ss_pred EccccceEEEEEecCCcc--eEEE--cCCCE-----E-EEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-
Confidence 999999888877654332 2343 55554 2 233557899999999888777665432 245556665
Q ss_pred CCCEEEEEeCCCcEEEEECCCceEEEEeec-----------cc---ccceEEEEEcCCCCe-EEEE
Q 015490 311 DGKLLAVGTASGDISIIDSSSLQVRTAVKK-----------AH---LGIVTALAFSYDSRA-LVSA 361 (406)
Q Consensus 311 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------~~---~~~v~~~~~sp~~~~-l~s~ 361 (406)
+|...|=.-....|...|..+|+....+.- .+ ..-.+.|++.|.... ++||
T Consensus 184 ~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 184 NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 565555444567788889999998876640 01 234789999887554 4555
No 395
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.0061 Score=60.39 Aligned_cols=73 Identities=21% Similarity=0.365 Sum_probs=56.5
Q ss_pred ccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCC---ceeEEEEccCCCEEEEEeCCCCEEEEEc
Q 015490 164 LENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHA---SVKDLSFSPDGKFLVSLGNRGPGRVWDL 238 (406)
Q Consensus 164 ~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---~i~~~~~s~~~~~l~s~s~d~~i~iwd~ 238 (406)
....++|++++|+.+|..++.|-.+|.|.+||+.+++....+..+.. .|..+.+..++..++++...|. +|.+
T Consensus 127 e~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 127 ERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 34568999999999999999999999999999999888877766555 3444555556667777777775 4543
No 396
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.80 E-value=0.0048 Score=61.06 Aligned_cols=98 Identities=18% Similarity=0.272 Sum_probs=69.7
Q ss_pred EEEcCCCcEEEEEeCCCc-eEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEE--
Q 015490 273 AAITDRGASIVTWNTTTW-KRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTAL-- 349 (406)
Q Consensus 273 ~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~-- 349 (406)
++.++..|.+...|.... .+...-....++|++++|+.+|+.++.|-.+|.|.+||+..++..+.+. .|..+.+++
T Consensus 102 ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~-e~~ap~t~vi~ 180 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT-EHGAPVTGVIF 180 (1206)
T ss_pred EEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee-ecCCccceEEE
Confidence 455566777777777652 2112222235789999999999999999999999999999998888875 555554444
Q ss_pred -EEcCCCCeEEEEECCCcEEEEEec
Q 015490 350 -AFSYDSRALVSASMDSSVRVTVIE 373 (406)
Q Consensus 350 -~~sp~~~~l~s~s~dg~i~iw~~~ 373 (406)
.+..++..++++...|. +|.+.
T Consensus 181 v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 181 VGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEeCCCcEEEEccCCCc--eEEEE
Confidence 44456666777766665 77764
No 397
>PHA02713 hypothetical protein; Provisional
Probab=96.80 E-value=0.18 Score=48.93 Aligned_cols=187 Identities=10% Similarity=0.025 Sum_probs=90.4
Q ss_pred CCCEEEEeeCC------CeEEEEeCCCcceEee--eeccCCceeEEEEccCCCEEEEEeCCC-----CEEEEEcCCCeee
Q 015490 178 EGTIFAAGSEN------GNLRVFKWPSLEIILN--ESEAHASVKDLSFSPDGKFLVSLGNRG-----PGRVWDLASSAVA 244 (406)
Q Consensus 178 ~g~~l~~~~~d------g~i~vwd~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~s~s~d~-----~i~iwd~~~~~~~ 244 (406)
++..++.|+.+ ..+..||..+...... +....... +++ .-+|+..+.|+.++ ++..||..+.+-.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 66777777753 3577888876643211 11111111 222 22577777777653 4788998776433
Q ss_pred eecccCCcceEEEEEEEcCCCCceEEEEEEEcCC---------------------CcEEEEEeCCCceE--EEEeeecCC
Q 015490 245 TPLAKENDELFASCRFSPLNNEDYVLYIAAITDR---------------------GASIVTWNTTTWKR--IRTKQVVRE 301 (406)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------------~~~i~~~d~~~~~~--~~~~~~~~~ 301 (406)
..-.......-.+++ .-++. +|++..... -..+..||..+.+- +..+.....
T Consensus 381 ~~~~mp~~r~~~~~~-~~~g~----IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~ 455 (557)
T PHA02713 381 MLPDMPIALSSYGMC-VLDQY----IYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI 455 (557)
T ss_pred ECCCCCcccccccEE-EECCE----EEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccc
Confidence 211111111001111 11232 333321110 13577888776432 222211111
Q ss_pred CeEEEEEcCCCCEEEEEeCC------CcEEEEECCC-ce--EEEEeecccccceEEEEEcCCCCeEEEEECCC--cEEEE
Q 015490 302 PVSSFNVSADGKLLAVGTAS------GDISIIDSSS-LQ--VRTAVKKAHLGIVTALAFSYDSRALVSASMDS--SVRVT 370 (406)
Q Consensus 302 ~i~~~~~sp~~~~l~~~~~d------g~i~i~d~~~-~~--~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg--~i~iw 370 (406)
.. +++ .-+++..++|+.+ ..+..||..+ .+ .+..+. ........+.+ +|+..++|+.|+ .+..|
T Consensus 456 ~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~-~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~y 530 (557)
T PHA02713 456 RP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE-SRLSALHTILH--DNTIMMLHCYESYMLQDTF 530 (557)
T ss_pred cC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC-cccccceeEEE--CCEEEEEeeecceeehhhc
Confidence 11 122 2246666667653 2467899876 33 333332 11122222222 678888999888 67777
Q ss_pred EecCCc
Q 015490 371 VIEDKK 376 (406)
Q Consensus 371 ~~~~~~ 376 (406)
|..+.+
T Consensus 531 d~~~~~ 536 (557)
T PHA02713 531 NVYTYE 536 (557)
T ss_pred Cccccc
Confidence 776654
No 398
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.79 E-value=0.0055 Score=36.90 Aligned_cols=35 Identities=11% Similarity=0.129 Sum_probs=30.8
Q ss_pred cccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490 342 HLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK 377 (406)
Q Consensus 342 ~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~ 377 (406)
....|..++|+|...+||.++.||.|.++.+ ++++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 4457999999999999999999999999999 5554
No 399
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=0.045 Score=54.94 Aligned_cols=158 Identities=15% Similarity=0.083 Sum_probs=94.8
Q ss_pred eEEecC-CCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCC-CEEE
Q 015490 107 AELRTD-SDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEG-TIFA 183 (406)
Q Consensus 107 ~~~~~h-~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~ 183 (406)
..++-| .-++..+...+|+...++.. .+...|+.+|..+..........+-......+.......++.|+|.- ...+
T Consensus 93 ~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~a 172 (1405)
T KOG3630|consen 93 LTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSA 172 (1405)
T ss_pred cceeeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhh
Confidence 344433 34567777788888776654 45566777776544332211110000001111222446788999854 3455
Q ss_pred EeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecc---cCCcceEEEEEE
Q 015490 184 AGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLA---KENDELFASCRF 260 (406)
Q Consensus 184 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~ 260 (406)
+...|+.|++..+........-..-....++++|+|.|+.++.|-..|++.-|... ++....+. ......+.++.|
T Consensus 173 v~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~W 251 (1405)
T KOG3630|consen 173 VDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTW 251 (1405)
T ss_pred hhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEE
Confidence 66778999988775433222222333478999999999999999999999988763 33333332 223456888888
Q ss_pred EcCCC
Q 015490 261 SPLNN 265 (406)
Q Consensus 261 ~~~~~ 265 (406)
-....
T Consensus 252 l~t~e 256 (1405)
T KOG3630|consen 252 LSTQE 256 (1405)
T ss_pred eccee
Confidence 87655
No 400
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.68 E-value=0.82 Score=45.76 Aligned_cols=246 Identities=15% Similarity=0.161 Sum_probs=128.3
Q ss_pred CCCceEEEEccCC--C----eEEEEe-cCCeEEEEEecccccceeecceeccceeeecccc---cCcEEEEEECCCCCEE
Q 015490 113 SDLPYRMAIHPHG--D----GIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN---VGQQLALTFDSEGTIF 182 (406)
Q Consensus 113 ~~~v~~~~~sp~~--~----~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~g~~l 182 (406)
+..|.|+.++|-| + ++++|. +..+.+.....+ ...... ..+.. +..|.-..|-.|..+|
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd-~~~~~~----------~~l~~~~iPRSIl~~~~e~d~~yL 598 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPD-LILITH----------EQLSGEIIPRSILLTTFEGDIHYL 598 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCC-cceeee----------eccCCCccchheeeEEeeccceEE
Confidence 5678999999853 2 455564 555444333322 111110 01111 2345555666678899
Q ss_pred EEeeCCCeEEEEeCC--CcceEeee--eccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEE
Q 015490 183 AAGSENGNLRVFKWP--SLEIILNE--SEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASC 258 (406)
Q Consensus 183 ~~~~~dg~i~vwd~~--~~~~~~~~--~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 258 (406)
.++..||.+.-|.++ ++.....- .-...++.--.|+..++.-+.+..|+-..+|..+..-....+....- -..+
T Consensus 599 lvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev--~~~c 676 (1096)
T KOG1897|consen 599 LVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEV--NHMC 676 (1096)
T ss_pred EEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHh--hhhc
Confidence 999999998877654 44332111 12233566566766555444455566666776543322222221111 1123
Q ss_pred EEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce--EEEEeeecCCCeEEEEEcCCCCEEEEEeCC--------------C
Q 015490 259 RFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK--RIRTKQVVREPVSSFNVSADGKLLAVGTAS--------------G 322 (406)
Q Consensus 259 ~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d--------------g 322 (406)
.|+.+.-.+.+ +.+ ..+.+.+.-++.-+ .+++...+ .....+++.+....+++.+.. .
T Consensus 677 ~f~s~a~~d~l--~~~---~~~~l~i~tid~iqkl~irtvpl~-~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s 750 (1096)
T KOG1897|consen 677 PFNSDAYPDSL--ASA---NGGALTIGTIDEIQKLHIRTVPLG-ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVS 750 (1096)
T ss_pred ccccccCCceE--EEe---cCCceEEEEecchhhcceeeecCC-CChhheEecccceEEEEEecccccchhhcCCcceEE
Confidence 34333222111 111 23445555443322 23333333 456778888755555444321 2
Q ss_pred cEEEEECCCceEEEEeeccccc---ceEEEEEcCC-CCeEEEEE----------CCCcEEEEEecCCcC
Q 015490 323 DISIIDSSSLQVRTAVKKAHLG---IVTALAFSYD-SRALVSAS----------MDSSVRVTVIEDKKK 377 (406)
Q Consensus 323 ~i~i~d~~~~~~~~~~~~~~~~---~v~~~~~sp~-~~~l~s~s----------~dg~i~iw~~~~~~~ 377 (406)
.++++|-++.+.+......... .+.++.|..| +.++++|+ ..|.|.++.+...++
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~ 819 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS 819 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc
Confidence 3788888887776654322223 3455568887 67777775 348899999887444
No 401
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.57 E-value=0.43 Score=41.26 Aligned_cols=209 Identities=13% Similarity=0.129 Sum_probs=120.6
Q ss_pred cEEEEEECCCCCEEEEeeCCCeEEEEeCC------Cc-ceEeeeec-----cCCceeEEEEccCCC------------EE
Q 015490 169 QQLALTFDSEGTIFAAGSENGNLRVFKWP------SL-EIILNESE-----AHASVKDLSFSPDGK------------FL 224 (406)
Q Consensus 169 ~v~~~~~s~~g~~l~~~~~dg~i~vwd~~------~~-~~~~~~~~-----~~~~i~~~~~s~~~~------------~l 224 (406)
.-..++++|.+.+-++....+...+||.. .. ..+..+.. .....+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 45689999999888887788899999986 12 12233331 122567777764322 36
Q ss_pred EEEeCCCCEEEEEcCCCee-----eeeccc-CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEE--Ee
Q 015490 225 VSLGNRGPGRVWDLASSAV-----ATPLAK-ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIR--TK 296 (406)
Q Consensus 225 ~s~s~d~~i~iwd~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~--~~ 296 (406)
+.+++||+|.-|...-+.. ...+.. ........+++...+.. .. +.++.-..++|.++|-.-.+... .+
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~-~~--LYaadF~~g~IDVFd~~f~~~~~~g~F 180 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGG-DY--LYAANFRQGRIDVFKGSFRPPPLPGSF 180 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCC-ce--EEEeccCCCceEEecCccccccCCCCc
Confidence 7789999999998533222 112221 12444566777755332 12 33444568899999865332210 01
Q ss_pred eecC-------CCe---------EEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee-cccccceEEEEEcC------
Q 015490 297 QVVR-------EPV---------SSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK-KAHLGIVTALAFSY------ 353 (406)
Q Consensus 297 ~~~~-------~~i---------~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~sp------ 353 (406)
.... ..| +-..-.++++.=+.|..-|.|-+||+. ++.++++. .+.-...+.|+..|
T Consensus 181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCC
Confidence 1100 001 111112222222233335789999986 67777663 23334566788766
Q ss_pred CCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490 354 DSRALVSASMDSSVRVTVIEDKKKSGGL 381 (406)
Q Consensus 354 ~~~~l~s~s~dg~i~iw~~~~~~~~~~~ 381 (406)
.|.+|+---.||+|..+|..+++.++.+
T Consensus 260 sg~lLVGNFGDG~InaFD~~sG~~~g~L 287 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQSGAQLGQL 287 (336)
T ss_pred CCCeEEeecCCceeEEecCCCCceeeee
Confidence 4666665567999999999988766544
No 402
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.50 E-value=0.38 Score=39.77 Aligned_cols=136 Identities=13% Similarity=0.142 Sum_probs=81.3
Q ss_pred ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCc-------ceEEEEEEEcCCCCceEEEEEEEcCCCcEEE
Q 015490 211 SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKEND-------ELFASCRFSPLNNEDYVLYIAAITDRGASIV 283 (406)
Q Consensus 211 ~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~ 283 (406)
..++-..+|+|++++-...|-.- .+....+.....+..|+- .....++|+.+.+. +| ...+.+-.|.
T Consensus 110 R~NDgkvdP~Gryy~GtMad~~~-~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~---fY--~iDsln~~V~ 183 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYGGTMADFGD-DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKK---FY--YIDSLNYEVD 183 (310)
T ss_pred ccccCccCCCCceeeeeeccccc-cccccccEEEEeccCCCceeeehhccCCccccccccCcE---EE--EEccCceEEe
Confidence 56677789999985433222111 222222222222222221 12346788877774 33 3345566776
Q ss_pred EEe--CCCceE-----EEEeeec----CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEc
Q 015490 284 TWN--TTTWKR-----IRTKQVV----REPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFS 352 (406)
Q Consensus 284 ~~d--~~~~~~-----~~~~~~~----~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s 352 (406)
-|| ..++.. +..++.. ....-.++..-+|++.++.-..++|..+|..+++.+.++. -....|++++|-
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik-lPt~qitsccFg 262 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK-LPTPQITSCCFG 262 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEE-cCCCceEEEEec
Confidence 666 555432 3333221 1112345667788888888889999999999999999997 567889999996
Q ss_pred C
Q 015490 353 Y 353 (406)
Q Consensus 353 p 353 (406)
-
T Consensus 263 G 263 (310)
T KOG4499|consen 263 G 263 (310)
T ss_pred C
Confidence 4
No 403
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.47 E-value=0.13 Score=48.27 Aligned_cols=115 Identities=9% Similarity=0.178 Sum_probs=72.0
Q ss_pred CcEEEEEECCCC-----CEEEEeeCCCeEEEEeCC-----CcceEeeeeccC-C----ceeEEEEccCCCEEEEEeCCCC
Q 015490 168 GQQLALTFDSEG-----TIFAAGSENGNLRVFKWP-----SLEIILNESEAH-A----SVKDLSFSPDGKFLVSLGNRGP 232 (406)
Q Consensus 168 ~~v~~~~~s~~g-----~~l~~~~~dg~i~vwd~~-----~~~~~~~~~~~~-~----~i~~~~~s~~~~~l~s~s~d~~ 232 (406)
..|..+.|.|-+ .+||+ .....|.||.+. +++.+.....+- . --..+.|+|....|++-.....
T Consensus 57 EhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv 135 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV 135 (671)
T ss_pred ceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence 458899999843 35555 556799999984 222222211111 1 2356889999888887776655
Q ss_pred EEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC
Q 015490 233 GRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT 288 (406)
Q Consensus 233 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~ 288 (406)
-.+++++.............+.|.|.+|.+||++ ++++.++ .-.-++||-.
T Consensus 136 SV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~R----LVVAvGS-sLHSyiWd~~ 186 (671)
T PF15390_consen 136 SVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQR----LVVAVGS-SLHSYIWDSA 186 (671)
T ss_pred eEeeeeeeCCceEEEeccCCceEEEEEecCcCCE----EEEEeCC-eEEEEEecCc
Confidence 5666765443333333345667999999999997 3444443 5556788754
No 404
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.44 E-value=0.0077 Score=58.60 Aligned_cols=214 Identities=12% Similarity=0.084 Sum_probs=117.0
Q ss_pred EecCCCCceEEEEccCC-CeEEEEecCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCEEEEee
Q 015490 109 LRTDSDLPYRMAIHPHG-DGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGS 186 (406)
Q Consensus 109 ~~~h~~~v~~~~~sp~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~ 186 (406)
+++.++.|..++|.... ..+. ---+...+|+++...++....+.+.+.. .+... ..|..+-|-++.-++..+-
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~-~~vg~lfVy~vd~l~G~iq~~l~v~~~~----p~gs~~~~V~wcp~~~~~~~ic~~~ 202 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR-RLVGELFVYDVDVLQGEIQPQLEVTPIT----PYGSDPQLVSWCPIAVNKVYICYGL 202 (1283)
T ss_pred HhcCCCCcccccccccCChHHH-HHhhhhheeehHhhccccccceEEeecC----cCCCCcceeeecccccccceeeecc
Confidence 44556777777774321 1111 1123456777777666554444332111 11111 2344444455677888888
Q ss_pred CCCeEEEEeCCCcceEeeeeccCCceeEEE-----------EccCCCEEEEEeCCCCEEEEEcC-----CCeeeeecccC
Q 015490 187 ENGNLRVFKWPSLEIILNESEAHASVKDLS-----------FSPDGKFLVSLGNRGPGRVWDLA-----SSAVATPLAKE 250 (406)
Q Consensus 187 ~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~-----------~s~~~~~l~s~s~d~~i~iwd~~-----~~~~~~~~~~~ 250 (406)
.+++|++..+++... .-+..|...+.+++ .||||+.+++++.||.++.|.+- ..++.+..+.|
T Consensus 203 ~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkph 281 (1283)
T KOG1916|consen 203 KGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPH 281 (1283)
T ss_pred CCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCC
Confidence 899999988765433 22233433444332 58999999999999998877652 33444555555
Q ss_pred CcceEEEEEEEcCCCC----ceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCE------------
Q 015490 251 NDELFASCRFSPLNNE----DYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKL------------ 314 (406)
Q Consensus 251 ~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~------------ 314 (406)
.+.+-.|.-|+..... .+..+.+.+.+.+..+++|....++++..+. ...|..+. -++|..
T Consensus 282 d~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~--~d~v~iV~-p~~~~v~~~~~~~~~~~~ 358 (1283)
T KOG1916|consen 282 DKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKL--IDGVQIVG-PHDGEVTDLSMCQWMTTR 358 (1283)
T ss_pred CCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhc--ccceEeec-CCCccccchhhhHHHHHH
Confidence 4333322223322211 1234456667788899999998888763222 12344444 333331
Q ss_pred EEEEeCCCcEEEEECCC
Q 015490 315 LAVGTASGDISIIDSSS 331 (406)
Q Consensus 315 l~~~~~dg~i~i~d~~~ 331 (406)
++.-+-++.|.+|.-+.
T Consensus 359 ~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 359 LVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred HHHhhhHHHHHHhhcch
Confidence 22334477788886443
No 405
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.39 E-value=0.011 Score=48.40 Aligned_cols=140 Identities=11% Similarity=0.070 Sum_probs=77.4
Q ss_pred EeeCCCeEEEEeCCCcceEeeeec-cCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEc
Q 015490 184 AGSENGNLRVFKWPSLEIILNESE-AHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSP 262 (406)
Q Consensus 184 ~~~~dg~i~vwd~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (406)
.-+.||.|+-++++.-+....-.. +...-..+. -+..+++|+.+|.|.+|..................+.++ -|
T Consensus 35 ~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~---~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~--Ip 109 (238)
T KOG2444|consen 35 ATSADGLVRERKVRKHKESCRSERFIDEGQRVVT---ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG--IP 109 (238)
T ss_pred cccCCcccccchhhhhhhhhhhhhhhhcceeecc---cCceEEeecccceEEEecCCccchHHHhhhcccccceec--cc
Confidence 335677887777654332211111 111111122 345789999999999998863221111111111122121 12
Q ss_pred CCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC-CCeEEEEEcCCCCEEEEE--eCCCcEEEEECCC
Q 015490 263 LNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR-EPVSSFNVSADGKLLAVG--TASGDISIIDSSS 331 (406)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~--~~dg~i~i~d~~~ 331 (406)
.++.. .+..++..++.|+.|+..-.+.+.....|. .++.....+..+++++.+ +.|..++.|++..
T Consensus 110 ~~~~~---~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 110 NGRDS---SLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccc---ceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 22210 145666789999999998877776666665 445555555556667766 6677777777754
No 406
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.35 E-value=0.81 Score=41.88 Aligned_cols=194 Identities=18% Similarity=0.158 Sum_probs=91.5
Q ss_pred CCCEEEEee-CCCeEEEEeCCCc----ceEeeeec---cC----CceeEEEEccCCCEEEEEeC------CCCEEEEEcC
Q 015490 178 EGTIFAAGS-ENGNLRVFKWPSL----EIILNESE---AH----ASVKDLSFSPDGKFLVSLGN------RGPGRVWDLA 239 (406)
Q Consensus 178 ~g~~l~~~~-~dg~i~vwd~~~~----~~~~~~~~---~~----~~i~~~~~s~~~~~l~s~s~------d~~i~iwd~~ 239 (406)
+.++|+..+ ..+.|+|+|+.+. +....+.. .. .....+..-|+|+.++++-. -|.+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345666655 6789999998632 22322221 11 12334555678988887632 2457888888
Q ss_pred CCeeeeecccCC--cceEEEEEEEcCCCCceEEEEEEE-------------------cCCCcEEEEEeCCCceEEEEeee
Q 015490 240 SSAVATPLAKEN--DELFASCRFSPLNNEDYVLYIAAI-------------------TDRGASIVTWNTTTWKRIRTKQV 298 (406)
Q Consensus 240 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~-------------------~~~~~~i~~~d~~~~~~~~~~~~ 298 (406)
+.+......... ...-..+.|.|..+. ++.+ +.....+.+||+.+.+.++++..
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nv-----MiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idL 240 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNV-----MISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDL 240 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTE-----EEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCE-----EEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEec
Confidence 777766665432 223456777776652 2222 12357899999999999999887
Q ss_pred cCCC--eEEEEEc--CCCCEEEEEeC-CCcEEEEEC-CCce----EEEEeec----cc------------ccceEEEEEc
Q 015490 299 VREP--VSSFNVS--ADGKLLAVGTA-SGDISIIDS-SSLQ----VRTAVKK----AH------------LGIVTALAFS 352 (406)
Q Consensus 299 ~~~~--i~~~~~s--p~~~~l~~~~~-dg~i~i~d~-~~~~----~~~~~~~----~~------------~~~v~~~~~s 352 (406)
.... ...+.|. |+..+=++++. .++|..|-- ..++ .+..+.. +- ..-|+.|..|
T Consensus 241 g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS 320 (461)
T PF05694_consen 241 GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS 320 (461)
T ss_dssp -TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-
T ss_pred CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc
Confidence 6422 3455554 44555444443 555555533 3332 1111110 00 2347899999
Q ss_pred CCCCeEEEEE-CCCcEEEEEecCCc
Q 015490 353 YDSRALVSAS-MDSSVRVTVIEDKK 376 (406)
Q Consensus 353 p~~~~l~s~s-~dg~i~iw~~~~~~ 376 (406)
.|.++|...+ .+|.|+.||+.++.
T Consensus 321 lDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 321 LDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred cCCCEEEEEcccCCcEEEEecCCCC
Confidence 9999987665 68999999998754
No 407
>PHA02713 hypothetical protein; Provisional
Probab=96.31 E-value=0.43 Score=46.40 Aligned_cols=150 Identities=15% Similarity=0.160 Sum_probs=76.2
Q ss_pred CCCEEEEeeCCC-----eEEEEeCCCcceEe--eeeccCCceeEEEEccCCCEEEEEeCCC-------------------
Q 015490 178 EGTIFAAGSENG-----NLRVFKWPSLEIIL--NESEAHASVKDLSFSPDGKFLVSLGNRG------------------- 231 (406)
Q Consensus 178 ~g~~l~~~~~dg-----~i~vwd~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~s~s~d~------------------- 231 (406)
+|++.+.|+.++ ++..||..+.+-.. .+.........+. -+++..+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccc
Confidence 678888888754 48889987654332 1111111112222 2577677776542
Q ss_pred ----CEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCC----CcEEEEEeCCC---ceEEEEeeecC
Q 015490 232 ----PGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDR----GASIVTWNTTT---WKRIRTKQVVR 300 (406)
Q Consensus 232 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~i~~~d~~~---~~~~~~~~~~~ 300 (406)
.+..||..+.+-...-.......-.+++ .-++. +|++...+. ...+..||..+ +..+..+....
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~----IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r 503 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDD----IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL 503 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcccccCcEE-EECCE----EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence 4677888776543221111111111121 22232 333322111 13467899876 34444443333
Q ss_pred CCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCceEEE
Q 015490 301 EPVSSFNVSADGKLLAVGTASG--DISIIDSSSLQVRT 336 (406)
Q Consensus 301 ~~i~~~~~sp~~~~l~~~~~dg--~i~i~d~~~~~~~~ 336 (406)
.....+.+ +|+..++|+.++ .+..||..+.+-..
T Consensus 504 ~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~ 539 (557)
T PHA02713 504 SALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNH 539 (557)
T ss_pred ccceeEEE--CCEEEEEeeecceeehhhcCcccccccc
Confidence 33333333 578888998888 67788877665443
No 408
>PHA03098 kelch-like protein; Provisional
Probab=96.31 E-value=0.3 Score=47.42 Aligned_cols=188 Identities=11% Similarity=0.066 Sum_probs=86.8
Q ss_pred CCCCEEEEeeCCC------eEEEEeCCCcceEeeeec---cCCceeEEEEccCCCEEEEEeCC-----CCEEEEEcCCCe
Q 015490 177 SEGTIFAAGSENG------NLRVFKWPSLEIILNESE---AHASVKDLSFSPDGKFLVSLGNR-----GPGRVWDLASSA 242 (406)
Q Consensus 177 ~~g~~l~~~~~dg------~i~vwd~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~s~s~d-----~~i~iwd~~~~~ 242 (406)
.++..++.|+.++ .+..||..+.+... ... .......+. -+++..+.|+.+ ..+..||..+.+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 3556677776542 57788887665432 211 111122222 256677777765 347778887654
Q ss_pred eeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCC----cEEEEEeCCCceEEE--EeeecCCCeEEEEEcCCCCEEE
Q 015490 243 VATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRG----ASIVTWNTTTWKRIR--TKQVVREPVSSFNVSADGKLLA 316 (406)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~i~~~d~~~~~~~~--~~~~~~~~i~~~~~sp~~~~l~ 316 (406)
-...-.......-.+++ .-++. +|++.....+ ..+..||..+.+-.. .+...... .+++ ..+++..+
T Consensus 370 W~~~~~lp~~r~~~~~~-~~~~~----iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~-~~~~~iyv 442 (534)
T PHA03098 370 WREEPPLIFPRYNPCVV-NVNNL----IYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAI-YHDGKIYV 442 (534)
T ss_pred eeeCCCcCcCCccceEE-EECCE----EEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEE-EECCEEEE
Confidence 33211111111111121 12222 3332211111 468889987643222 11111111 1222 23466666
Q ss_pred EEeCC--------CcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECC-----CcEEEEEecCC
Q 015490 317 VGTAS--------GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMD-----SSVRVTVIEDK 375 (406)
Q Consensus 317 ~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d-----g~i~iw~~~~~ 375 (406)
.|+.+ ..+.+||..+.+-...-.......-.+++ .-+++.++.|+.+ +.|.+||..+.
T Consensus 443 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 443 IGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLC-IFNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred ECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEE-EECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 66542 23888998765433221101111111122 1266777777654 46888887764
No 409
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.26 E-value=1.5 Score=44.14 Aligned_cols=156 Identities=17% Similarity=0.201 Sum_probs=91.8
Q ss_pred CCEEEEeeCCCeEEEEeCCCcceEeeeeccCCce-------------eEEEEcc--CCCEEEEEeC----------CCCE
Q 015490 179 GTIFAAGSENGNLRVFKWPSLEIILNESEAHASV-------------KDLSFSP--DGKFLVSLGN----------RGPG 233 (406)
Q Consensus 179 g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i-------------~~~~~s~--~~~~l~s~s~----------d~~i 233 (406)
+..++.++.|+.+.-.|.++|+....+.. .+.| ..+.-.| .+..+++++. +|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 45788888999999999999998865422 1111 0111112 1335555642 5789
Q ss_pred EEEEcCCCeeeeecccCC---------c--------ceEEEEEEEcCCCCceEEEEEEE---------------cCCCcE
Q 015490 234 RVWDLASSAVATPLAKEN---------D--------ELFASCRFSPLNNEDYVLYIAAI---------------TDRGAS 281 (406)
Q Consensus 234 ~iwd~~~~~~~~~~~~~~---------~--------~~~~~~~~~~~~~~~~~l~~~~~---------------~~~~~~ 281 (406)
+-+|.++|+..-.+.... + ..-..+++.+... ++|+-.. ....+.
T Consensus 339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~g---lvy~ptGn~~pd~~g~~r~~~~n~y~~s 415 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLG---LVYLPMGNQTPDQWGGDRTPADEKYSSS 415 (764)
T ss_pred EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCC---eEEEeCCCccccccCCccccCcccccce
Confidence 999999998876543210 0 0001233333332 1222110 112466
Q ss_pred EEEEeCCCceEEEEeeecCCCeE---------EEEEcC-CCC---EEEEEeCCCcEEEEECCCceEEEEe
Q 015490 282 IVTWNTTTWKRIRTKQVVREPVS---------SFNVSA-DGK---LLAVGTASGDISIIDSSSLQVRTAV 338 (406)
Q Consensus 282 i~~~d~~~~~~~~~~~~~~~~i~---------~~~~sp-~~~---~l~~~~~dg~i~i~d~~~~~~~~~~ 338 (406)
|.-.|.++++..-.++...+.+. -+.+.. +|+ .++.++.+|.++++|.++++.+...
T Consensus 416 lvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 416 LVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred EEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 77889999988776654222111 122322 553 7889999999999999999887654
No 410
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.20 E-value=0.15 Score=46.87 Aligned_cols=89 Identities=15% Similarity=0.218 Sum_probs=66.0
Q ss_pred ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCC------------CceEEEEEEEcCC
Q 015490 211 SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNN------------EDYVLYIAAITDR 278 (406)
Q Consensus 211 ~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~~~~~~ 278 (406)
.+.+++.+|++++.++...-|.|.++|+.++..++.+++-.+..+.-+....... ....++++.....
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 5788999999998888877899999999999988888876555433232222211 1235667777788
Q ss_pred CcEEEEEeCCCceEEEEeeec
Q 015490 279 GASIVTWNTTTWKRIRTKQVV 299 (406)
Q Consensus 279 ~~~i~~~d~~~~~~~~~~~~~ 299 (406)
.|.|-+|.++++..+..+...
T Consensus 389 Rg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 389 RGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred CCeEEEEecCCCCEEEEEEeC
Confidence 999999999998887776654
No 411
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.13 E-value=0.072 Score=53.54 Aligned_cols=143 Identities=17% Similarity=0.157 Sum_probs=87.3
Q ss_pred ceeEEEEccCCCEEEEE--eCCCCEEEEEcCCCeeee-----ecc-----cCCcceEEEEEEEcCCCCceEEEEEEEcCC
Q 015490 211 SVKDLSFSPDGKFLVSL--GNRGPGRVWDLASSAVAT-----PLA-----KENDELFASCRFSPLNNEDYVLYIAAITDR 278 (406)
Q Consensus 211 ~i~~~~~s~~~~~l~s~--s~d~~i~iwd~~~~~~~~-----~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 278 (406)
.|..+...+|+...++. +.+-.|..||+++-.... .+. ........++.|+|.-.. ..+....
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~-----n~av~l~ 176 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPL-----NSAVDLS 176 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccc-----hhhhhcc
Confidence 56667777787654443 344478899987532211 111 112223457788886553 3344456
Q ss_pred CcEEEEEeCCCceE-EEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeec---ccccceEEEEEcCC
Q 015490 279 GASIVTWNTTTWKR-IRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKK---AHLGIVTALAFSYD 354 (406)
Q Consensus 279 ~~~i~~~d~~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~sp~ 354 (406)
|+.|++.-+..... +..+. .....++++|+|.|+.+++|-..|++.-|-.. ++....+.. .....|.+++|-..
T Consensus 177 dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 177 DLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred ccchhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecc
Confidence 77777776653322 22222 23567999999999999999999999888653 343333321 12467899999876
Q ss_pred CCeEEE
Q 015490 355 SRALVS 360 (406)
Q Consensus 355 ~~~l~s 360 (406)
-.++++
T Consensus 255 ~eflvv 260 (1405)
T KOG3630|consen 255 QEFLVV 260 (1405)
T ss_pred eeEEEE
Confidence 666654
No 412
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.12 E-value=1.3 Score=43.12 Aligned_cols=191 Identities=15% Similarity=0.183 Sum_probs=95.9
Q ss_pred EEEECCCCCEEEEeeCC------CeEEEEeCCCcceEeeeeccCCceeEEEE-ccCCCEEEEEeCCC-----CEEEEEcC
Q 015490 172 ALTFDSEGTIFAAGSEN------GNLRVFKWPSLEIILNESEAHASVKDLSF-SPDGKFLVSLGNRG-----PGRVWDLA 239 (406)
Q Consensus 172 ~~~~s~~g~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~-s~~~~~l~s~s~d~-----~i~iwd~~ 239 (406)
+++.. ++...++|+.| .++..||..+.+-.. ...-...-..... .-+|...++|+.|| ++..||..
T Consensus 327 ~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~ 404 (571)
T KOG4441|consen 327 GVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPV 404 (571)
T ss_pred cEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEEECCEEEEEeccccccccccEEEecCC
Confidence 33443 45788889888 357788887766332 2211111111111 12677888888876 47778887
Q ss_pred CCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCC------cEEEEEeCCCceE--EEEeeecCCCeEEEEEcCC
Q 015490 240 SSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRG------ASIVTWNTTTWKR--IRTKQVVREPVSSFNVSAD 311 (406)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~i~~~d~~~~~~--~~~~~~~~~~i~~~~~sp~ 311 (406)
+.+-...-.... .........-+.. +| +.|+.+ ..+..||..+.+- +..+........ ++ .-+
T Consensus 405 ~~~W~~va~m~~--~r~~~gv~~~~g~---iY--i~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~ 475 (571)
T KOG4441|consen 405 TNKWTPVAPMLT--RRSGHGVAVLGGK---LY--IIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLN 475 (571)
T ss_pred CCcccccCCCCc--ceeeeEEEEECCE---EE--EEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EE-EEC
Confidence 654332221111 1122222222222 33 333322 4577888876543 222222222222 22 225
Q ss_pred CCEEEEEeCCCc-----EEEEECCCceEEEEeec-ccccceEEEEEcCCCCeEEEEECCC-----cEEEEEecCC
Q 015490 312 GKLLAVGTASGD-----ISIIDSSSLQVRTAVKK-AHLGIVTALAFSYDSRALVSASMDS-----SVRVTVIEDK 375 (406)
Q Consensus 312 ~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~s~s~dg-----~i~iw~~~~~ 375 (406)
+...++|+.|+. |..||..+.+-...-.- .....+....+ +++..+.|+.|| +|..||..+.
T Consensus 476 ~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 476 GKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred CEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence 677778887763 77888876554333210 12222222222 467778888876 4666655543
No 413
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.09 E-value=1 Score=40.62 Aligned_cols=68 Identities=18% Similarity=0.108 Sum_probs=42.1
Q ss_pred CCeEEEEEcC-------CCCEEEEEeCCCcEEEEECCCceEEE---EeecccccceEEEEEcCCCCeEEEEECCCcEE
Q 015490 301 EPVSSFNVSA-------DGKLLAVGTASGDISIIDSSSLQVRT---AVKKAHLGIVTALAFSYDSRALVSASMDSSVR 368 (406)
Q Consensus 301 ~~i~~~~~sp-------~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~ 368 (406)
..+..+.|.. .|.++++.-..+.|....+.....+. .+.......+..+++.|||.++++-..+|.|+
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 4556666653 34566665556778888876443322 22223444789999999999888888888874
No 414
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.31 Score=44.34 Aligned_cols=136 Identities=7% Similarity=0.102 Sum_probs=81.7
Q ss_pred EEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCC
Q 015490 118 RMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWP 197 (406)
Q Consensus 118 ~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~ 197 (406)
.+-|...++.+++..++...=|......... ..-......++|.++.||+|.+.+|+--.+.+|.+++..
T Consensus 27 gvFfDDaNkqlfavrSggatgvvvkgpndDV----------piSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~ 96 (657)
T KOG2377|consen 27 GVFFDDANKQLFAVRSGGATGVVVKGPNDDV----------PISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFI 96 (657)
T ss_pred ceeeccCcceEEEEecCCeeEEEEeCCCCCC----------CceeeecCCCceeEEEeccCcceEEEEecCceEEEEecC
Confidence 4445555566666666666666555432111 111122345799999999999999999999999999984
Q ss_pred CcceEeee----eccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCC
Q 015490 198 SLEIILNE----SEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNN 265 (406)
Q Consensus 198 ~~~~~~~~----~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (406)
..+..... ......|....|+.+ .-+|..+.. .+.+|.+...+...++...+...+.-..|.++.+
T Consensus 97 ~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~-G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~ 166 (657)
T KOG2377|consen 97 PDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQ-GIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETA 166 (657)
T ss_pred CCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecC-CeEEEEEchhhhhhhhhhhcccCccEEEEccccc
Confidence 33322211 112225899999865 556666644 4677766544333222223344456667777766
No 415
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.01 E-value=1 Score=39.77 Aligned_cols=153 Identities=18% Similarity=0.245 Sum_probs=79.0
Q ss_pred ccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEe
Q 015490 207 EAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWN 286 (406)
Q Consensus 207 ~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d 286 (406)
.....+..+.-++||+++++++......-||--... -..........+..+.|.|++. +++++ ..+.|++=+
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~-w~~~~r~~~~riq~~gf~~~~~----lw~~~---~Gg~~~~s~ 213 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT-WQPHNRNSSRRIQSMGFSPDGN----LWMLA---RGGQIQFSD 213 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS-----EEEEE---TTTEEEEEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc-ceEEccCccceehhceecCCCC----EEEEe---CCcEEEEcc
Confidence 334578889999999988888766556677754321 1111222345688999999976 23332 678888877
Q ss_pred -CCCceEEEE----eeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeec--ccccceEEEEEcCCCCeEE
Q 015490 287 -TTTWKRIRT----KQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKK--AHLGIVTALAFSYDSRALV 359 (406)
Q Consensus 287 -~~~~~~~~~----~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~ 359 (406)
....+.... .......+..++|.+++...++|+ .|. .+...+.++.=..... .-...+..+.|.++.+-++
T Consensus 214 ~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~-l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~ 291 (302)
T PF14870_consen 214 DPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGT-LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV 291 (302)
T ss_dssp -TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT--EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE
T ss_pred CCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-Ccc-EEEeCCCCccceECccccCCCCceEEEEEcCCCceEE
Confidence 222222222 111223478999999988777665 443 3456666654444322 2234578888876655555
Q ss_pred EEECCCcEEEE
Q 015490 360 SASMDSSVRVT 370 (406)
Q Consensus 360 s~s~dg~i~iw 370 (406)
.+.+|.|.-|
T Consensus 292 -lG~~G~ll~~ 301 (302)
T PF14870_consen 292 -LGQDGVLLRY 301 (302)
T ss_dssp -E-STTEEEEE
T ss_pred -ECCCcEEEEe
Confidence 4578877655
No 416
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.75 E-value=1.2 Score=40.99 Aligned_cols=144 Identities=15% Similarity=0.147 Sum_probs=78.7
Q ss_pred CcEEEEEECCCCCEEEEee-----------CCC-eEEEEeCCC--cc--eEeeeeccCCceeEEEEccCCCEEEEEeCCC
Q 015490 168 GQQLALTFDSEGTIFAAGS-----------ENG-NLRVFKWPS--LE--IILNESEAHASVKDLSFSPDGKFLVSLGNRG 231 (406)
Q Consensus 168 ~~v~~~~~s~~g~~l~~~~-----------~dg-~i~vwd~~~--~~--~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~ 231 (406)
.....++|.++|+++++-. ..+ .|.+++-.+ ++ ....+...-.....+++.+++ |++++..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~- 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP- 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC-
Confidence 3456889999999877642 223 677776432 32 222333333356889999988 4444444
Q ss_pred CEEEE-EcCCC-----e--ee-eecccC---CcceEEEEEEEcCCCCceEEEEEEEcC-----------------CCcEE
Q 015490 232 PGRVW-DLASS-----A--VA-TPLAKE---NDELFASCRFSPLNNEDYVLYIAAITD-----------------RGASI 282 (406)
Q Consensus 232 ~i~iw-d~~~~-----~--~~-~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------~~~~i 282 (406)
.|..+ |.... + .+ ..+... .......+.|.|++. +|+..... ..+.|
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~----LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i 166 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW----LYFNHGNTLASKVTRPGTSDESRQGLGGGL 166 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC----EEEecccCCCceeccCCCccCcccccCceE
Confidence 34434 44211 1 11 122221 123366789999986 33322211 11456
Q ss_pred EEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEe
Q 015490 283 VTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGT 319 (406)
Q Consensus 283 ~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 319 (406)
.-+|..+++....-.+. .....++|+|+|+++++-.
T Consensus 167 ~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 167 FRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred EEEecCCCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence 67777665432222222 3357899999998877644
No 417
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.97 Score=36.80 Aligned_cols=173 Identities=19% Similarity=0.242 Sum_probs=91.5
Q ss_pred CCCEEEEeeC--CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEE-eCCCCEEEEEcCCCeeeeecccCCcce
Q 015490 178 EGTIFAAGSE--NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSL-GNRGPGRVWDLASSAVATPLAKENDEL 254 (406)
Q Consensus 178 ~g~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~~~~~ 254 (406)
+|.++.+.+. ...|++||+.+++.+....-....+..=-...-+.++..- -.+|....+|.++-+++..+.-.....
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW 134 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW 134 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence 4556655544 3479999999998776554332222221111123333332 347788889998887777665433321
Q ss_pred EEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeec--CCC---eEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 015490 255 FASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVV--REP---VSSFNVSADGKLLAVGTASGDISIIDS 329 (406)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~---i~~~~~sp~~~~l~~~~~dg~i~i~d~ 329 (406)
....++.. +..++....++.-|..+.....+.... ..+ +..+.|- ||...|-.-.+..|...+.
T Consensus 135 ----gLt~d~~~------LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p 203 (262)
T COG3823 135 ----GLTSDDKN------LIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDP 203 (262)
T ss_pred ----eeecCCcc------eEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcC
Confidence 22334443 223345566777777665444333221 111 2222332 4444443334445555566
Q ss_pred CCceEEEEee-----------cccccceEEEEEcCCC-CeEEEE
Q 015490 330 SSLQVRTAVK-----------KAHLGIVTALAFSYDS-RALVSA 361 (406)
Q Consensus 330 ~~~~~~~~~~-----------~~~~~~v~~~~~sp~~-~~l~s~ 361 (406)
++|+.+..+. ..|..-.+.+++.|++ ++++||
T Consensus 204 ~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 204 DSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 6666554432 2344567799999986 666666
No 418
>PRK13684 Ycf48-like protein; Provisional
Probab=95.59 E-value=1.4 Score=39.88 Aligned_cols=150 Identities=15% Similarity=0.122 Sum_probs=80.8
Q ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEE-eCCCcceEeeee-ccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee
Q 015490 168 GQQLALTFDSEGTIFAAGSENGNLRVF-KWPSLEIILNES-EAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT 245 (406)
Q Consensus 168 ~~v~~~~~s~~g~~l~~~~~dg~i~vw-d~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~ 245 (406)
..+.++.+.+++.+++++. .|.+..- + ..++.-.... .....++++.+.++++.++++ ..|.+++=....+..-.
T Consensus 173 g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred ceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence 4678899999987776654 4554432 2 2222222222 223478999999998876654 45655432233443322
Q ss_pred ecccC---CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEee---ecCCCeEEEEEcCCCCEEEEEe
Q 015490 246 PLAKE---NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQ---VVREPVSSFNVSADGKLLAVGT 319 (406)
Q Consensus 246 ~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~---~~~~~i~~~~~sp~~~~l~~~~ 319 (406)
....+ ....+..+.+.+++. +.+. +.+|.+.. ....++.-.... .-......+.|..+++.+++ +
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~------~~~~-G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G 320 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGE------IWAG-GGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-G 320 (334)
T ss_pred cccCCccccccceeeEEEcCCCC------EEEE-cCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-C
Confidence 22211 223466788888665 2233 33454442 333333222221 12235777888777766665 4
Q ss_pred CCCcEEEEEC
Q 015490 320 ASGDISIIDS 329 (406)
Q Consensus 320 ~dg~i~i~d~ 329 (406)
..|.|..++-
T Consensus 321 ~~G~il~~~~ 330 (334)
T PRK13684 321 QRGVLLRYVG 330 (334)
T ss_pred CCceEEEecC
Confidence 5788777653
No 419
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.52 E-value=1.5 Score=38.25 Aligned_cols=205 Identities=12% Similarity=0.141 Sum_probs=109.0
Q ss_pred ceEEEEccCCCeEEEEecCCeEEEEEecccccceee-cceeccceeeecccccCcEEEEE--ECCCC-CEEEEeeCCCeE
Q 015490 116 PYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRR-LGVKISEKVLSQLENVGQQLALT--FDSEG-TIFAAGSENGNL 191 (406)
Q Consensus 116 v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~--~s~~g-~~l~~~~~dg~i 191 (406)
|..+...|+-+.+++-+|+.+.++.++.-....... ............+.....+...+ -...+ ..|+++. ...|
T Consensus 38 I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i 116 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKI 116 (275)
T ss_pred EEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEE
Confidence 999999999888888888888888776543322111 00000000011122223444444 11233 4555544 4589
Q ss_pred EEEeCCCc-----ceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCc-----------ceE
Q 015490 192 RVFKWPSL-----EIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKEND-----------ELF 255 (406)
Q Consensus 192 ~vwd~~~~-----~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~-----------~~~ 255 (406)
.+|.+... +....+ .-...+.+++|. ++.++.+..+ ...+.|+.++.....+..... .++
T Consensus 117 ~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 192 (275)
T PF00780_consen 117 LIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPL 192 (275)
T ss_pred EEEEEECCcccccceeEEE-EcCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCce
Confidence 99988653 233333 233578999998 5567777755 588899987665443322111 112
Q ss_pred EEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEE--EeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCce
Q 015490 256 ASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIR--TKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQ 333 (406)
Q Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~--~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~ 333 (406)
..+.. +++. ++++. +..-.+.|.. |+..+ .+.-. ....++++. ..||++.+. +.|.||++.+++
T Consensus 193 ~~~~~-~~~e-----~Ll~~---~~~g~fv~~~-G~~~r~~~i~W~-~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~ 258 (275)
T PF00780_consen 193 GIFQL-SDNE-----FLLCY---DNIGVFVNKN-GEPSRKSTIQWS-SAPQSVAYS--SPYLIAFSS-NSIEVRSLETGE 258 (275)
T ss_pred EEEEe-CCce-----EEEEe---cceEEEEcCC-CCcCcccEEEcC-CchhEEEEE--CCEEEEECC-CEEEEEECcCCc
Confidence 11222 2222 12221 2333333433 22222 22222 344566654 347776655 559999999999
Q ss_pred EEEEee
Q 015490 334 VRTAVK 339 (406)
Q Consensus 334 ~~~~~~ 339 (406)
.++.+.
T Consensus 259 lvQ~i~ 264 (275)
T PF00780_consen 259 LVQTIP 264 (275)
T ss_pred EEEEEE
Confidence 888875
No 420
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.51 E-value=1 Score=41.81 Aligned_cols=144 Identities=10% Similarity=0.073 Sum_probs=79.2
Q ss_pred ccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCC--------CEEEEeeCCCeEEE
Q 015490 122 HPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEG--------TIFAAGSENGNLRV 193 (406)
Q Consensus 122 sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--------~~l~~~~~dg~i~v 193 (406)
..+...++..+...-++|.+|...++.+... ..+..+ -+.|.|+. +.| +|-.+..|.-
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW------------~~~ddv-vVqy~p~~kf~qmt~eqtl-vGlS~~svFr 541 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEW------------DLKDDV-VVQYNPYFKFQQMTDEQTL-VGLSDYSVFR 541 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEe------------ecCCcc-eeecCCchhHHhcCccceE-EeecccceEE
Confidence 3445555555555558888888755544433 334444 56666643 233 3444444544
Q ss_pred EeCCC-cceEeeeeccCCceeEEEEc----cCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCce
Q 015490 194 FKWPS-LEIILNESEAHASVKDLSFS----PDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDY 268 (406)
Q Consensus 194 wd~~~-~~~~~~~~~~~~~i~~~~~s----~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (406)
.|.+- |..+. ......-++.-.|+ ....+++.+|..|-|++||--.-+ ..+.....+..|..+..+.+|..
T Consensus 542 IDPR~~gNKi~-v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~r-AKtalP~lG~aIk~idvta~Gk~-- 617 (776)
T COG5167 542 IDPRARGNKIK-VVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR-AKTALPGLGDAIKHIDVTANGKH-- 617 (776)
T ss_pred ecccccCCcee-eeeehhccccccccccccccCceEEEecCCCceeeehhhcch-hhhcCcccccceeeeEeecCCcE--
Confidence 45432 22221 11111112222222 234589999999999999964333 33333344556788999999985
Q ss_pred EEEEEEEcCCCcEEEEEeCC
Q 015490 269 VLYIAAITDRGASIVTWNTT 288 (406)
Q Consensus 269 ~l~~~~~~~~~~~i~~~d~~ 288 (406)
+++++ ...+.+.|++
T Consensus 618 ---ilaTC--k~yllL~d~~ 632 (776)
T COG5167 618 ---ILATC--KNYLLLTDVP 632 (776)
T ss_pred ---EEEee--cceEEEEecc
Confidence 55554 4567777764
No 421
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.49 E-value=2.1 Score=39.66 Aligned_cols=288 Identities=12% Similarity=0.089 Sum_probs=143.4
Q ss_pred CCCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEcc-----CCCeEEEEecCCeEEEE
Q 015490 66 IRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHP-----HGDGIICALQNSCRLFE 140 (406)
Q Consensus 66 ~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-----~~~~l~~~~~~~~~i~~ 140 (406)
+.....++++.-.| .+..+++..+......+.--..-..+|..++.-. +...|++-.-+.+.||.
T Consensus 34 ~~~~d~IivGS~~G----------~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~ 103 (418)
T PF14727_consen 34 PSGSDKIIVGSYSG----------ILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYS 103 (418)
T ss_pred CCCccEEEEecccc----------EEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEE
Confidence 33455666653333 3445555544433333333333456777776543 23355555688888888
Q ss_pred Eecccccceeecceeccceeeeccccc--CcEEEEEECC----C-CCEEEEeeCCCeEEEEeCCCcceEeeeeccCCcee
Q 015490 141 WDEVENTEIRRLGVKISEKVLSQLENV--GQQLALTFDS----E-GTIFAAGSENGNLRVFKWPSLEIILNESEAHASVK 213 (406)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~----~-g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~ 213 (406)
+....+.....- ..+....++|+ .....++.-| . ..++++-+.||.+.+|+-+.......+.. .--..
T Consensus 104 v~~~~g~~~~g~----~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPg 178 (418)
T PF14727_consen 104 VSLVDGTVEHGN----QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPG 178 (418)
T ss_pred EEecCCCcccCc----EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCc
Confidence 855443311100 01111112222 2223333322 2 36788889999999999655443333322 22345
Q ss_pred EEEEccCCCEEEEEeCCCCEEEEEcCCCee-----------------eeec----ccCCcceEEEEEEEcCCCCceEEEE
Q 015490 214 DLSFSPDGKFLVSLGNRGPGRVWDLASSAV-----------------ATPL----AKENDELFASCRFSPLNNEDYVLYI 272 (406)
Q Consensus 214 ~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~-----------------~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~ 272 (406)
.+.+.+.-..|++++.+..+.-|....-.. .+.+ ...-+..+..+..-........ +
T Consensus 179 Pl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~--I 256 (418)
T PF14727_consen 179 PLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESD--I 256 (418)
T ss_pred CeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCce--E
Confidence 678888888899999888888886521100 0000 0011222223332222111011 2
Q ss_pred EEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEE-Ec----CCC---CEEEEEeCCCcEEEEECCCceEEEEeeccccc
Q 015490 273 AAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFN-VS----ADG---KLLAVGTASGDISIIDSSSLQVRTAVKKAHLG 344 (406)
Q Consensus 273 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~-~s----p~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 344 (406)
++.+ ...+.+.+.. |......+. +....+++ |. .++ ..+++++.++.+.||.=.+ .+-... ....
T Consensus 257 vvLg--er~Lf~l~~~-G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~--L~WsA~-l~~~ 329 (418)
T PF14727_consen 257 VVLG--ERSLFCLKDN-GSLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT--LVWSAQ-LPHV 329 (418)
T ss_pred EEEe--cceEEEEcCC-CeEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe--EEEecC-CCCC
Confidence 2221 4566666653 344333333 22222222 21 122 2588889999999997433 333322 1122
Q ss_pred ce--EEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490 345 IV--TALAFSYDSRALVSASMDSSVRVTVIEDKKK 377 (406)
Q Consensus 345 ~v--~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~ 377 (406)
+| .-..|..-...+++-+.+|.+.+--+.|.-.
T Consensus 330 PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs 364 (418)
T PF14727_consen 330 PVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPS 364 (418)
T ss_pred CEEEEecccCCCCceEEEEcCCCcEEEEEeCCCCc
Confidence 22 2222333345788889999999988876543
No 422
>PHA03098 kelch-like protein; Provisional
Probab=95.24 E-value=1.6 Score=42.47 Aligned_cols=147 Identities=12% Similarity=0.056 Sum_probs=69.2
Q ss_pred CCCEEEEeeCC-----CeEEEEeCCCcceEee--eeccCCceeEEEEccCCCEEEEEeCC------CCEEEEEcCCCeee
Q 015490 178 EGTIFAAGSEN-----GNLRVFKWPSLEIILN--ESEAHASVKDLSFSPDGKFLVSLGNR------GPGRVWDLASSAVA 244 (406)
Q Consensus 178 ~g~~l~~~~~d-----g~i~vwd~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~s~s~d------~~i~iwd~~~~~~~ 244 (406)
++++++.|+.+ ..+..||..+.+-... +...... .+++ .-+++..+.|+.+ ..+..||..+.+-.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 67777888765 3577888776543321 1111111 1122 2356666666632 35788998776543
Q ss_pred eecccCCcceEEEEEEEcCCCCceEEEEEEEcCC------CcEEEEEeCCCceEE--EEeeecCCCeEEEEEcCCCCEEE
Q 015490 245 TPLAKENDELFASCRFSPLNNEDYVLYIAAITDR------GASIVTWNTTTWKRI--RTKQVVREPVSSFNVSADGKLLA 316 (406)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~i~~~d~~~~~~~--~~~~~~~~~i~~~~~sp~~~~l~ 316 (406)
..-.......-.++ ...++. +|++..... -..+..||..+.+-. ..+.........+.+ +++.++
T Consensus 420 ~~~~~p~~r~~~~~-~~~~~~----iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv 492 (534)
T PHA03098 420 KGSPLPISHYGGCA-IYHDGK----IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYV 492 (534)
T ss_pred ecCCCCccccCceE-EEECCE----EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEE
Confidence 32111111111112 222222 333321111 124888998765422 211111111122222 567777
Q ss_pred EEeCC-----CcEEEEECCCce
Q 015490 317 VGTAS-----GDISIIDSSSLQ 333 (406)
Q Consensus 317 ~~~~d-----g~i~i~d~~~~~ 333 (406)
.|+.+ +.+.+||..+.+
T Consensus 493 ~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 493 VGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred EcCCcCCcccceeEEEeCCCCE
Confidence 77654 468888877654
No 423
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.23 E-value=0.42 Score=47.51 Aligned_cols=75 Identities=17% Similarity=0.237 Sum_probs=53.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----------ce--EEE-Ee-------ecccccceEEEEEcCC---CCe
Q 015490 301 EPVSSFNVSADGKLLAVGTASGDISIIDSSS----------LQ--VRT-AV-------KKAHLGIVTALAFSYD---SRA 357 (406)
Q Consensus 301 ~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~----------~~--~~~-~~-------~~~~~~~v~~~~~sp~---~~~ 357 (406)
..|..+.++|+|++++..+..| |.|..+.. ++ ... ++ ...+...|..+.|+|. +.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 4688899999999999988766 44444421 11 111 11 1234457889999996 588
Q ss_pred EEEEECCCcEEEEEecCCc
Q 015490 358 LVSASMDSSVRVTVIEDKK 376 (406)
Q Consensus 358 l~s~s~dg~i~iw~~~~~~ 376 (406)
|+.-+.|+++|+||+...+
T Consensus 164 l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEEecCCEEEEEecCCCC
Confidence 9999999999999997644
No 424
>PHA02790 Kelch-like protein; Provisional
Probab=95.23 E-value=2.4 Score=40.50 Aligned_cols=185 Identities=11% Similarity=-0.019 Sum_probs=83.7
Q ss_pred CCCEEEEeeCCC-----eEEEEeCCCcceEee--eeccCCceeEEEEccCCCEEEEEeCC--CCEEEEEcCCCeeeeecc
Q 015490 178 EGTIFAAGSENG-----NLRVFKWPSLEIILN--ESEAHASVKDLSFSPDGKFLVSLGNR--GPGRVWDLASSAVATPLA 248 (406)
Q Consensus 178 ~g~~l~~~~~dg-----~i~vwd~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~s~s~d--~~i~iwd~~~~~~~~~~~ 248 (406)
++.++++|+.++ ++..||..++..... ........ +++ .-++...+.|+.+ ..+..||..+++-...-.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 456667776542 577788776553321 11111111 222 2356666677653 357888876654322111
Q ss_pred cCCcceEEEEEEEcCCCCceEEEEEEEcC-CCcEEEEEeCCCceEEEE--eeecCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 015490 249 KENDELFASCRFSPLNNEDYVLYIAAITD-RGASIVTWNTTTWKRIRT--KQVVREPVSSFNVSADGKLLAVGTASGDIS 325 (406)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~i~~~d~~~~~~~~~--~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~ 325 (406)
.... ........-++. +|++.... ....+..||.++.+-... ..........+ .-+++..+.| |.+.
T Consensus 349 l~~~-r~~~~~~~~~g~----IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~--~~~~~IYv~G---G~~e 418 (480)
T PHA02790 349 LLKP-RCNPAVASINNV----IYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL--VFGRRLFLVG---RNAE 418 (480)
T ss_pred CCCC-CcccEEEEECCE----EEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE--EECCEEEEEC---CceE
Confidence 1111 111111122332 33332211 124567788776432221 11111111122 2346555665 3577
Q ss_pred EEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECC-----CcEEEEEecCC
Q 015490 326 IIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMD-----SSVRVTVIEDK 375 (406)
Q Consensus 326 i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d-----g~i~iw~~~~~ 375 (406)
+||..+.+-...-...+...-.+++. -+|+..+.|+.+ ..+..||..+.
T Consensus 419 ~ydp~~~~W~~~~~m~~~r~~~~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 419 FYCESSNTWTLIDDPIYPRDNPELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred EecCCCCcEeEcCCCCCCccccEEEE-ECCEEEEECCcCCCcccceEEEEECCCC
Confidence 88887654332211011111112222 267777788754 35777777654
No 425
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=95.22 E-value=3.3 Score=40.38 Aligned_cols=245 Identities=13% Similarity=0.136 Sum_probs=125.6
Q ss_pred EEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCC---CCEEEEeeCC-CeEEE
Q 015490 119 MAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSE---GTIFAAGSEN-GNLRV 193 (406)
Q Consensus 119 ~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~~~~d-g~i~v 193 (406)
..++|+...+-.|- ...+.-|.+.. +.+.++.+.+ .....|.||..-.. .+..++|-.+ ..-++
T Consensus 33 ~~~s~~sn~IdiGIS~S~ISsYIi~P-TPKLiwsypi----------~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~l 101 (670)
T PF10395_consen 33 DDFSPDSNQIDIGISGSAISSYIIKP-TPKLIWSYPI----------SPTTIVECCDVLEKSDGKKLYCVGLTERKKFKL 101 (670)
T ss_pred cccCCCCceEEEEeccchhhheecCC-CcceeEeecc----------CcCceEEEEEeEecCCCcEEEEEEEeeCCeeEE
Confidence 36777887777764 33344444332 2222222222 22345666665432 2455555333 33343
Q ss_pred EeCCCc-----------c--eEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCe--eeeecccCCcc-eEEE
Q 015490 194 FKWPSL-----------E--IILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSA--VATPLAKENDE-LFAS 257 (406)
Q Consensus 194 wd~~~~-----------~--~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~~~~~-~~~~ 257 (406)
..+..+ + ....+ .-...|-++.+.++++.+++.-.+|.|.+||...+. .+..+...+.. .+.+
T Consensus 102 l~i~~~~~~~~~~~~~~e~~~~~~~-kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys 180 (670)
T PF10395_consen 102 LLIERKVGSTEDGTVNSETTNEFEL-KLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS 180 (670)
T ss_pred EEEEccCccccccccCccccceEEE-EcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh
Confidence 333222 1 11111 124578899999999999999999999999993322 21223222222 1222
Q ss_pred EEEEcCCC---CceEEEEEEE-cCCCcEEEEEeC--CCceEEEEee---ecCCCe--EEEEEcCCCCEEEEEeCCCcEEE
Q 015490 258 CRFSPLNN---EDYVLYIAAI-TDRGASIVTWNT--TTWKRIRTKQ---VVREPV--SSFNVSADGKLLAVGTASGDISI 326 (406)
Q Consensus 258 ~~~~~~~~---~~~~l~~~~~-~~~~~~i~~~d~--~~~~~~~~~~---~~~~~i--~~~~~sp~~~~l~~~~~dg~i~i 326 (406)
.|-++.. ....++++.. .+..-..+++.+ .. .....+. .+.... ..+++. +|++... .++.|.+
T Consensus 181 -~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~-~~~~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~i~~ 255 (670)
T PF10395_consen 181 -KFVNDFELENGKDLLLTVSQLSNSKLSYKLISLSNES-SSIFELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKTISS 255 (670)
T ss_pred -hhhcccccccCCceEEEEEEcCCCcEEEEEEEeccCC-cceEEeehheeccCCcccceEEEe-CCEEEEE--eCCEEEE
Confidence 3333222 1113333333 344566778877 22 2222222 121222 233333 4544333 6789999
Q ss_pred EECCCceEEEEeeccc---c--cceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCch
Q 015490 327 IDSSSLQVRTAVKKAH---L--GIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLN 382 (406)
Q Consensus 327 ~d~~~~~~~~~~~~~~---~--~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~ 382 (406)
|++...+...++.-.+ . ..+.++.--...|.|++ .+++|++.|+.-...++++.
T Consensus 256 ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s~nRvLLs--~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 256 YSIPNFQIQKTISLPSIIDKESDDLVSLKPPSPNRVLLS--VNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred EEcCCceEEEEEEechhhccccccceEeecCCCCeEEEE--cCCEEEEEeehhhhhhhhhh
Confidence 9999888777664210 1 22334432223455554 46789999998776666655
No 426
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.20 E-value=3.2 Score=41.50 Aligned_cols=88 Identities=6% Similarity=0.076 Sum_probs=56.4
Q ss_pred CCCceEEEEccCCCeEEEEecCCeEEEEEecccccc--e----eeccee--ccceeeecccccCcEEEEEECCC---CCE
Q 015490 113 SDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTE--I----RRLGVK--ISEKVLSQLENVGQQLALTFDSE---GTI 181 (406)
Q Consensus 113 ~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~--~----~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~---g~~ 181 (406)
.-.|..+.++|+|++++..+...+.|..+...-+.. . ..+..+ +-...+........|..+.|+|. +..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 346889999999999999888877777664321110 0 001100 00111111223357899999996 478
Q ss_pred EEEeeCCCeEEEEeCCCcc
Q 015490 182 FAAGSENGNLRVFKWPSLE 200 (406)
Q Consensus 182 l~~~~~dg~i~vwd~~~~~ 200 (406)
|++-..|+++++||+....
T Consensus 164 l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEEecCCEEEEEecCCCC
Confidence 8888999999999996543
No 427
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.17 E-value=2.5 Score=38.76 Aligned_cols=141 Identities=14% Similarity=0.160 Sum_probs=71.2
Q ss_pred CCceEEEEccCCCeEEEEe----------cCC-eEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEE
Q 015490 114 DLPYRMAIHPHGDGIICAL----------QNS-CRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIF 182 (406)
Q Consensus 114 ~~v~~~~~sp~~~~l~~~~----------~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 182 (406)
..+..|+|.++|+.+++.. ... -+|+.++..++... ..+.......-.....+++.++| ++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~-------~d~~~vfa~~l~~p~Gi~~~~~G-ly 85 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGK-------YDKSNVFAEELSMVTGLAVAVGG-VY 85 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCC-------cceeEEeecCCCCccceeEecCC-EE
Confidence 4567899999999777642 111 26666654322100 00000111122445788999988 44
Q ss_pred EEeeCCCeEEEEeCCCc-----c--eEee-eec----cCCceeEEEEccCCCEEEEEeCC-------------------C
Q 015490 183 AAGSENGNLRVFKWPSL-----E--IILN-ESE----AHASVKDLSFSPDGKFLVSLGNR-------------------G 231 (406)
Q Consensus 183 ~~~~~dg~i~vwd~~~~-----~--~~~~-~~~----~~~~i~~~~~s~~~~~l~s~s~d-------------------~ 231 (406)
+ +......++.|.+.. + .+.. +.. ++.....++|.|||.+.++.+.. +
T Consensus 86 V-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g 164 (367)
T TIGR02604 86 V-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGG 164 (367)
T ss_pred E-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCc
Confidence 4 444433334354211 1 1211 212 12357789999999866654421 3
Q ss_pred CEEEEEcCCCeeeeecccCCcceEEEEEEEcCCC
Q 015490 232 PGRVWDLASSAVATPLAKENDELFASCRFSPLNN 265 (406)
Q Consensus 232 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (406)
.|.-++..+++. ..+.... .....++|+++++
T Consensus 165 ~i~r~~pdg~~~-e~~a~G~-rnp~Gl~~d~~G~ 196 (367)
T TIGR02604 165 GLFRYNPDGGKL-RVVAHGF-QNPYGHSVDSWGD 196 (367)
T ss_pred eEEEEecCCCeE-EEEecCc-CCCccceECCCCC
Confidence 455555544433 2222222 2234788998876
No 428
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.01 E-value=1.6 Score=42.86 Aligned_cols=163 Identities=10% Similarity=0.087 Sum_probs=93.1
Q ss_pred CCeEEEEecCCeEEEEEecccccce----eecceeccce-----eeecccccCcEEEEEECC--CCCEEEEeeCCCeEEE
Q 015490 125 GDGIICALQNSCRLFEWDEVENTEI----RRLGVKISEK-----VLSQLENVGQQLALTFDS--EGTIFAAGSENGNLRV 193 (406)
Q Consensus 125 ~~~l~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~~-----~~~~~~~~~~v~~~~~s~--~g~~l~~~~~dg~i~v 193 (406)
..+++++..+.+.||..+....... ..+...+... .......+..|+.+.... +...|+.+..||.|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 6788888899999998876544221 1111111110 111111223455554443 4478889999999999
Q ss_pred EeCCC-------c----ce-E-------eeeeccCCceeEEEEc--cCCCEEEEEeCCCCEEEEEcCCC--eeeeecccC
Q 015490 194 FKWPS-------L----EI-I-------LNESEAHASVKDLSFS--PDGKFLVSLGNRGPGRVWDLASS--AVATPLAKE 250 (406)
Q Consensus 194 wd~~~-------~----~~-~-------~~~~~~~~~i~~~~~s--~~~~~l~s~s~d~~i~iwd~~~~--~~~~~~~~~ 250 (406)
|.+++ . +. . .-.......+++++++ ...++||+++....|.||-.... +....-...
T Consensus 129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~ 208 (717)
T PF08728_consen 129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQ 208 (717)
T ss_pred EEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccc
Confidence 97621 1 00 0 0011122367889998 77888888888888888866442 111111112
Q ss_pred CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeC
Q 015490 251 NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNT 287 (406)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~ 287 (406)
+...|.+++|-++.....-...++..+-.|.+.+|++
T Consensus 209 ~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 209 HSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 3445789999887743221123445567788888777
No 429
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.78 E-value=2 Score=41.84 Aligned_cols=189 Identities=15% Similarity=0.150 Sum_probs=93.5
Q ss_pred CCCCCEEEEeeCC------CeEEEEeCCCcceEeeeeccCC-ceeEEEEccCCCEEEEEeCC------CCEEEEEcCCCe
Q 015490 176 DSEGTIFAAGSEN------GNLRVFKWPSLEIILNESEAHA-SVKDLSFSPDGKFLVSLGNR------GPGRVWDLASSA 242 (406)
Q Consensus 176 s~~g~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~s~s~d------~~i~iwd~~~~~ 242 (406)
+..+.+++.|+.+ ..+..||..++.......-... .-.+++.. ++...++|+.| .++..||..+.+
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 3445677788776 3688888877643322211111 23344444 45677788888 357788888776
Q ss_pred eeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCc-----EEEEEeCCCceE--EEEeeecCCCeEEEEEcCCCCEE
Q 015490 243 VATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGA-----SIVTWNTTTWKR--IRTKQVVREPVSSFNVSADGKLL 315 (406)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~i~~~d~~~~~~--~~~~~~~~~~i~~~~~sp~~~~l 315 (406)
-.. +..-.... .......-+.. +.+.|+.+| .+-.||..+.+- +.............. -+|+..
T Consensus 361 W~~-~a~M~~~R-~~~~v~~l~g~-----iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~iY 431 (571)
T KOG4441|consen 361 WTP-VAPMNTKR-SDFGVAVLDGK-----LYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKLY 431 (571)
T ss_pred eec-cCCccCcc-ccceeEEECCE-----EEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEEE
Confidence 333 21111111 11222222221 345555554 366777765432 221111111112222 257777
Q ss_pred EEEeCCC------cEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCc-----EEEEEecCC
Q 015490 316 AVGTASG------DISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSS-----VRVTVIEDK 375 (406)
Q Consensus 316 ~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~-----i~iw~~~~~ 375 (406)
++|+.++ ++..||..+.+-.....-.-...-..++. -++...+.|+.|+. |..+|..+.
T Consensus 432 i~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 432 IIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETN 501 (571)
T ss_pred EEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCC
Confidence 7877543 57888887654332221000011111222 25677777877763 556666553
No 430
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.41 E-value=0.25 Score=28.88 Aligned_cols=31 Identities=29% Similarity=0.422 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCC---CEEEEEeCCCcEEEEECCC
Q 015490 301 EPVSSFNVSADG---KLLAVGTASGDISIIDSSS 331 (406)
Q Consensus 301 ~~i~~~~~sp~~---~~l~~~~~dg~i~i~d~~~ 331 (406)
+.+.++.|||++ .+|+.+-..|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 358899999854 4888887789999999995
No 431
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.38 E-value=0.24 Score=28.89 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=26.0
Q ss_pred CcEEEEEECCCC---CEEEEeeCCCeEEEEeCCC
Q 015490 168 GQQLALTFDSEG---TIFAAGSENGNLRVFKWPS 198 (406)
Q Consensus 168 ~~v~~~~~s~~g---~~l~~~~~dg~i~vwd~~~ 198 (406)
+.+.++.|||+. .+|+.+-..|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 368899999844 5888888889999999985
No 432
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=94.32 E-value=2 Score=39.36 Aligned_cols=161 Identities=15% Similarity=0.121 Sum_probs=89.4
Q ss_pred ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee-ecccC-Cc---ceEE-EEEEEcCCCCceEEEEEEEcCCCcEEEE
Q 015490 211 SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT-PLAKE-ND---ELFA-SCRFSPLNNEDYVLYIAAITDRGASIVT 284 (406)
Q Consensus 211 ~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~~~-~~---~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~i~~ 284 (406)
.+..+-..|||+.+..-+. ..+.++++.+..... ++... .+ ..++ .+.....+. .+...+.||.|.-
T Consensus 222 ~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~------SLLv~~~dG~vsQ 294 (733)
T COG4590 222 DVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGF------SLLVVHEDGLVSQ 294 (733)
T ss_pred chHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCce------eEEEEcCCCceee
Confidence 4556777899998887766 688888886543221 11111 11 0111 011111111 2334466777776
Q ss_pred E-eCCCc-e----EEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeE
Q 015490 285 W-NTTTW-K----RIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRAL 358 (406)
Q Consensus 285 ~-d~~~~-~----~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 358 (406)
| |.+.. . .++.++....++..+.-..+.+-+++-+..|++.++.....+.+..- ..-..+.-+++||.+.+|
T Consensus 295 WFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~--~~~~~~~~~~~Sp~~~~L 372 (733)
T COG4590 295 WFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE--RAYQAPQLVAMSPNQAYL 372 (733)
T ss_pred eeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh--hhhcCcceeeeCcccchh
Confidence 6 44332 1 12223333334444433334455667777888887765544433222 123356778999999998
Q ss_pred EEEECCCcEEEEEecCCcCCCCc
Q 015490 359 VSASMDSSVRVTVIEDKKKSGGL 381 (406)
Q Consensus 359 ~s~s~dg~i~iw~~~~~~~~~~~ 381 (406)
++- ..|.++++.+++...--++
T Consensus 373 l~e-~~gki~~~~l~Nr~Peisw 394 (733)
T COG4590 373 LSE-DQGKIRLAQLENRNPEISW 394 (733)
T ss_pred eee-cCCceEEEEecCCCCCccH
Confidence 865 4578999999887664443
No 433
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=94.15 E-value=7.6 Score=39.62 Aligned_cols=168 Identities=14% Similarity=0.125 Sum_probs=97.7
Q ss_pred cCCCCceEEEEc---c----CCCeEEEEecCCeEEEEEecccc-----cceeecceeccceeeeccc----ccCcEEEEE
Q 015490 111 TDSDLPYRMAIH---P----HGDGIICALQNSCRLFEWDEVEN-----TEIRRLGVKISEKVLSQLE----NVGQQLALT 174 (406)
Q Consensus 111 ~h~~~v~~~~~s---p----~~~~l~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~----~~~~v~~~~ 174 (406)
.-..+|..|.|. . ..++|++=....+.|+.-..... .....+ ...++..+. +..+...++
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i----~~~~l~~i~~~~tgg~~~aDv~ 152 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRI----DPNPLLTISSSDTGGFPHADVA 152 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCcccc----ccceeEEechhhcCCCccceEE
Confidence 456788889888 2 22455555566666655221111 011111 222333333 335678899
Q ss_pred ECC-CCCEEEEeeCCCeEEEEeCCCcc----eEeee----ec-------cCCceeEEEEccCCCEEEEEeCCCCEEEEEc
Q 015490 175 FDS-EGTIFAAGSENGNLRVFKWPSLE----IILNE----SE-------AHASVKDLSFSPDGKFLVSLGNRGPGRVWDL 238 (406)
Q Consensus 175 ~s~-~g~~l~~~~~dg~i~vwd~~~~~----~~~~~----~~-------~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~ 238 (406)
|+| +.+.||+....|...||++.... ..... .+ ..+.-..+.|.++-+.|++++.. .+.++|+
T Consensus 153 FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~d~ 231 (765)
T PF10214_consen 153 FNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLIDF 231 (765)
T ss_pred eccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-ceEEEEC
Confidence 999 45789999999999999992111 00000 01 11234478898888888888765 7899999
Q ss_pred CCCeeee-ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC
Q 015490 239 ASSAVAT-PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT 289 (406)
Q Consensus 239 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~ 289 (406)
++..... .........+..+.-++.... .+|++. ...|...|...
T Consensus 232 ~~~~~~~~l~~~~~~~~IlDv~~~~~~~~--~~FiLT----s~eiiw~~~~~ 277 (765)
T PF10214_consen 232 ESNWQTEYLVTAKTWSWILDVKRSPDNPS--HVFILT----SKEIIWLDVKS 277 (765)
T ss_pred CCCCccchhccCCChhheeeEEecCCccc--eEEEEe----cCeEEEEEccC
Confidence 8876644 333334455767777776443 334432 34566666654
No 434
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.69 E-value=2.9 Score=37.76 Aligned_cols=107 Identities=18% Similarity=0.239 Sum_probs=58.6
Q ss_pred eeEEEEccCCCEEEEEeCCCCEEEEEcCCCee---eeec---ccCCcceEEEEEEEcCCCCceEEEEEEEcC------CC
Q 015490 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAV---ATPL---AKENDELFASCRFSPLNNEDYVLYIAAITD------RG 279 (406)
Q Consensus 212 i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~ 279 (406)
.+.|+|.|||+.++ +...|.|++++ ..+.. +..+ ..........++++|+-..+..+|+..+.. ..
T Consensus 4 P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 57899999997665 56699999999 34443 2222 223445578999999744434566655521 12
Q ss_pred cEEEEEeCCCc-------eEE-EEeee---cCCCeEEEEEcCCCCEEEEEeC
Q 015490 280 ASIVTWNTTTW-------KRI-RTKQV---VREPVSSFNVSADGKLLAVGTA 320 (406)
Q Consensus 280 ~~i~~~d~~~~-------~~~-~~~~~---~~~~i~~~~~sp~~~~l~~~~~ 320 (406)
..|.-|..... +.+ ..... ....-..|.|.|||.+.++.+.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 23443433222 111 12222 2345678999999976655443
No 435
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.63 E-value=0.6 Score=39.19 Aligned_cols=67 Identities=12% Similarity=0.077 Sum_probs=50.4
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCceEEEEe------ec-------ccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490 308 VSADGKLLAVGTASGDISIIDSSSLQVRTAV------KK-------AHLGIVTALAFSYDSRALVSASMDSSVRVTVIED 374 (406)
Q Consensus 308 ~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~------~~-------~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~ 374 (406)
+..++++|++-+.+|.+++||+.+++.+... .. .....|..+.++.+|.-+++-+ +|..+.|+.+-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 3456889999999999999999988765432 11 2446688999998898777765 57788888754
Q ss_pred C
Q 015490 375 K 375 (406)
Q Consensus 375 ~ 375 (406)
+
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 3
No 436
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.52 E-value=3.5 Score=40.29 Aligned_cols=181 Identities=16% Similarity=0.167 Sum_probs=92.6
Q ss_pred CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecc---cCCcceEEEEEEEcCCC
Q 015490 189 GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLA---KENDELFASCRFSPLNN 265 (406)
Q Consensus 189 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 265 (406)
-.|+||+. +|+.+..+.-.+..+-.+.|+.+.. |++...+|++++|++-.. ...... ......|..+.+..+|-
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecchh-hhcccccccccccCceeEEEEecCce
Confidence 46888885 5666656555555788999997654 667889999999998533 222211 11122344455555442
Q ss_pred CceEEEEEEEcCCCcEEEEEeCCCceEEEEeee-cCCCe--EEEEEcCCCC---EEEEEe-CCCcEEEEECCCce-EEEE
Q 015490 266 EDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV-VREPV--SSFNVSADGK---LLAVGT-ASGDISIIDSSSLQ-VRTA 337 (406)
Q Consensus 266 ~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~i--~~~~~sp~~~---~l~~~~-~dg~i~i~d~~~~~-~~~~ 337 (406)
.++ ..+|.+.+.+-.......+... ..... .|-...++++ .++-.. ..+ ..++-..... ....
T Consensus 141 -----avl---t~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~ 211 (829)
T KOG2280|consen 141 -----AVL---TVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHA 211 (829)
T ss_pred -----EEE---ecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccc
Confidence 122 2344554443332222222221 11111 2222222211 111111 011 1111111111 1112
Q ss_pred eecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCch
Q 015490 338 VKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLN 382 (406)
Q Consensus 338 ~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~ 382 (406)
+. .....+..+..||+.++|+--..+|.|.+-+.+..+....++
T Consensus 212 ~~-~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 212 LS-WPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred cC-CCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 21 123567788999999999988899999888887766655444
No 437
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.49 E-value=1.2 Score=41.43 Aligned_cols=77 Identities=14% Similarity=0.092 Sum_probs=51.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEE---------CCCceEEE---E-------eecccccceEEEEEcCCC---CeEE
Q 015490 302 PVSSFNVSADGKLLAVGTASGDISIID---------SSSLQVRT---A-------VKKAHLGIVTALAFSYDS---RALV 359 (406)
Q Consensus 302 ~i~~~~~sp~~~~l~~~~~dg~i~i~d---------~~~~~~~~---~-------~~~~~~~~v~~~~~sp~~---~~l~ 359 (406)
.|..+..++.|..++..+.+|.+.++= ++.++... + +.....-.+..++|+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 467788899999999999998554432 12232211 1 111122346788999974 6788
Q ss_pred EEECCCcEEEEEecCCcCC
Q 015490 360 SASMDSSVRVTVIEDKKKS 378 (406)
Q Consensus 360 s~s~dg~i~iw~~~~~~~~ 378 (406)
.-+.|..||+|++.....+
T Consensus 185 iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEecCcEEEEEecCCcchh
Confidence 8889999999999876653
No 438
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.47 E-value=4.1 Score=39.78 Aligned_cols=120 Identities=13% Similarity=0.098 Sum_probs=70.0
Q ss_pred ceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEEC--CCCCE
Q 015490 105 PVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFD--SEGTI 181 (406)
Q Consensus 105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~g~~ 181 (406)
...++...-..+.-+.-+.-++..++.. ...+.||+ ...+.. +.-..+..++.|.++.|. |+|+.
T Consensus 21 ~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD--~~~~~l----------E~~~~f~~~~~I~dLDWtst~d~qs 88 (631)
T PF12234_consen 21 LTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWD--TRSGVL----------EYEESFSEDDPIRDLDWTSTPDGQS 88 (631)
T ss_pred EEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEE--cCCcEE----------EEeeeecCCCceeeceeeecCCCCE
Confidence 3344444445556666666555444433 44455554 433321 111223456889999985 58888
Q ss_pred EEEeeCCCeEEEEeCC---------CcceEee--eeccC-CceeEEEEccCCCEEEEEeCCCCEEEEEc
Q 015490 182 FAAGSENGNLRVFKWP---------SLEIILN--ESEAH-ASVKDLSFSPDGKFLVSLGNRGPGRVWDL 238 (406)
Q Consensus 182 l~~~~~dg~i~vwd~~---------~~~~~~~--~~~~~-~~i~~~~~s~~~~~l~s~s~d~~i~iwd~ 238 (406)
+++.+....|.+|.-. +...+.. +..+. .+|.+..|.++|..++.++ +.+.|+|-
T Consensus 89 iLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 89 ILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred EEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 8888888999998631 1112222 23333 3799999999997555443 46777764
No 439
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.26 E-value=0.74 Score=38.63 Aligned_cols=66 Identities=17% Similarity=0.287 Sum_probs=47.8
Q ss_pred ECCCCCEEEEeeCCCeEEEEeCCCcceEeee------e--------ccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCC
Q 015490 175 FDSEGTIFAAGSENGNLRVFKWPSLEIILNE------S--------EAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLAS 240 (406)
Q Consensus 175 ~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~------~--------~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~ 240 (406)
+..+++++++-+.+|.+++||+.+++.+..- . .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4457788999999999999999988765332 1 2334778888888887776665 46778888653
Q ss_pred C
Q 015490 241 S 241 (406)
Q Consensus 241 ~ 241 (406)
+
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 3
No 440
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.24 E-value=5.6 Score=35.17 Aligned_cols=238 Identities=13% Similarity=0.165 Sum_probs=104.5
Q ss_pred CCCceEEEEccCCCeEEEEecCCeEEEEEeccccccee-ecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeE
Q 015490 113 SDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIR-RLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNL 191 (406)
Q Consensus 113 ~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i 191 (406)
...+..|.|..+..-++++..+ .|+. ..++.... ....... -.......++.|..+ ..+++| ..+.
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~~g--~il~--T~DGG~tW~~~~~~~~------~~~~~~l~~I~f~~~-~g~ivG-~~g~- 82 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGAYG--TILK--TTDGGKTWQPVSLDLD------NPFDYHLNSISFDGN-EGWIVG-EPGL- 82 (302)
T ss_dssp SS-EEEEEESSSS-EEEEETTT--EEEE--ESSTTSS-EE-----S-----------EEEEEEEETT-EEEEEE-ETTE-
T ss_pred CCceEEEEEecCCEEEEEecCC--EEEE--ECCCCccccccccCCC------ccceeeEEEEEecCC-ceEEEc-CCce-
Confidence 3467889998666666666544 3332 22222221 1111000 000123567777643 444444 4453
Q ss_pred EEEeCCCcceEeeee---ccCCceeEEEEccCCCEEEEEeCCCCEEEEEcC-CCeeeeecccCCcceEEEEEEEcCCCCc
Q 015490 192 RVFKWPSLEIILNES---EAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLA-SSAVATPLAKENDELFASCRFSPLNNED 267 (406)
Q Consensus 192 ~vwd~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (406)
.+...+.|+.-..+. .-......+....++..++ .+..|.| |-.. .|+.-..+.......+..+..+++++.
T Consensus 83 ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~i--y~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~- 158 (302)
T PF14870_consen 83 LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAI--YRTTDGGKTWQAVVSETSGSINDITRSSDGRY- 158 (302)
T ss_dssp EEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--E--EEESSTTSSEEEEE-S----EEEEEE-TTS-E-
T ss_pred EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcE--EEeCCCCCCeeEcccCCcceeEeEEECCCCcE-
Confidence 333334444332322 1122333444444443333 3444443 3322 233222222233445777888899873
Q ss_pred eEEEEEEEcCCCcEEEEEeCCC--ceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC-CCceEEEE--eec-c
Q 015490 268 YVLYIAAITDRGASIVTWNTTT--WKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDS-SSLQVRTA--VKK-A 341 (406)
Q Consensus 268 ~~l~~~~~~~~~~~i~~~d~~~--~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~-~~~~~~~~--~~~-~ 341 (406)
++.+.....+.-||.-. ..+... .....|.+|.|+|++.+.+++ ..|.|++=+. .....-.. ... .
T Consensus 159 -----vavs~~G~~~~s~~~G~~~w~~~~r--~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~ 230 (302)
T PF14870_consen 159 -----VAVSSRGNFYSSWDPGQTTWQPHNR--NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKT 230 (302)
T ss_dssp -----EEEETTSSEEEEE-TT-SS-EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS
T ss_pred -----EEEECcccEEEEecCCCccceEEcc--CccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCccc
Confidence 44555566667788643 333332 234779999999998876654 7888888772 22222211 110 1
Q ss_pred cccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490 342 HLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK 377 (406)
Q Consensus 342 ~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~ 377 (406)
..-.+..++|.+++...++|+ .|.+ +...+.++.
T Consensus 231 ~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGkt 264 (302)
T PF14870_consen 231 NGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKT 264 (302)
T ss_dssp --S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS
T ss_pred CceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCcc
Confidence 122378999999887777654 4544 344444443
No 441
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.03 E-value=5.3 Score=34.26 Aligned_cols=198 Identities=14% Similarity=0.106 Sum_probs=119.0
Q ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee-e
Q 015490 168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT-P 246 (406)
Q Consensus 168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~-~ 246 (406)
..-..++-+|||..-+++...+.|--.|-.+|+....-.+....-..|..-|||..-++-+.. .|.-.|-++.+... .
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~ 140 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFP 140 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEee
Confidence 344678889999888888888888888988998776655555567788888888765554333 55556665544322 2
Q ss_pred ccc-CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeec-CCCeEEEEEcCCCCEEEEEeCCCcE
Q 015490 247 LAK-ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVV-REPVSSFNVSADGKLLAVGTASGDI 324 (406)
Q Consensus 247 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~~~~dg~i 324 (406)
+.. +.........|.+.+. +.++...+.-|. .|..+ ..++.+... ...-+.|+..|||..-++.-.++.|
T Consensus 141 lp~~~a~~nlet~vfD~~G~----lWFt~q~G~yGr---LdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnai 212 (353)
T COG4257 141 LPLEHADANLETAVFDPWGN----LWFTGQIGAYGR---LDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASLAGNAI 212 (353)
T ss_pred cccccCCCcccceeeCCCcc----EEEeecccccee---cCccc-CceeeeccCCCCCCcceEECCCCcEEEEeccccce
Confidence 222 2233466778888886 333333222221 22222 123333322 2345789999999988877777778
Q ss_pred EEEECCCceEEEEee-cccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490 325 SIIDSSSLQVRTAVK-KAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED 374 (406)
Q Consensus 325 ~i~d~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~ 374 (406)
-..|..++....... .......+.+--+|.|+.-+|-...+.+..+|-.+
T Consensus 213 aridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 213 ARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred EEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence 777876653222211 12122344555567777777766666666666543
No 442
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.01 E-value=1.8 Score=42.11 Aligned_cols=84 Identities=13% Similarity=0.122 Sum_probs=57.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEc--CCCCeEEEEECCCcEEEEEecCCcCC
Q 015490 301 EPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFS--YDSRALVSASMDSSVRVTVIEDKKKS 378 (406)
Q Consensus 301 ~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s--p~~~~l~s~s~dg~i~iw~~~~~~~~ 378 (406)
....-+.-|.-++..++-+....+.|||.+.+.....-.-...+.|.++.|. |+|+.+++.+..+.|.++--......
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 4455566666566555555556799999998886555432357889999985 58999999999999999865433333
Q ss_pred CCchHH
Q 015490 379 GGLNLW 384 (406)
Q Consensus 379 ~~~~~~ 384 (406)
...|.|
T Consensus 110 ~~~p~w 115 (631)
T PF12234_consen 110 NKGPSW 115 (631)
T ss_pred cCCccc
Confidence 334443
No 443
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.86 E-value=4.3 Score=38.05 Aligned_cols=80 Identities=13% Similarity=0.104 Sum_probs=54.3
Q ss_pred cEEEEEECCCCCEEEEeeCCCeEEEEeC---------CCcceEe--e--------ee-ccCCceeEEEEccCC---CEEE
Q 015490 169 QQLALTFDSEGTIFAAGSENGNLRVFKW---------PSLEIIL--N--------ES-EAHASVKDLSFSPDG---KFLV 225 (406)
Q Consensus 169 ~v~~~~~s~~g~~l~~~~~dg~i~vwd~---------~~~~~~~--~--------~~-~~~~~i~~~~~s~~~---~~l~ 225 (406)
.|..+..++.|..++..+.+|.+.++=. ++|+... . +. ..+-.+...+|+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 5677888999999998888887665431 2332211 1 11 112256788999975 5788
Q ss_pred EEeCCCCEEEEEcCCCeeeeecc
Q 015490 226 SLGNRGPGRVWDLASSAVATPLA 248 (406)
Q Consensus 226 s~s~d~~i~iwd~~~~~~~~~~~ 248 (406)
.-+.|..|++||+...+.+....
T Consensus 185 iL~sdnviRiy~lS~~telylqp 207 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELYLQP 207 (741)
T ss_pred EEecCcEEEEEecCCcchhhccC
Confidence 88889999999998766654433
No 444
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=92.73 E-value=8.8 Score=36.08 Aligned_cols=112 Identities=13% Similarity=0.094 Sum_probs=62.1
Q ss_pred CCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCee--eeecc----cCCcceEEEEEEEcCC---CCceEEEEEEEcCC-
Q 015490 209 HASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAV--ATPLA----KENDELFASCRFSPLN---NEDYVLYIAAITDR- 278 (406)
Q Consensus 209 ~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~--~~~~~----~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~- 278 (406)
-...+.|+|.|||++|++--..|.|++++..++.. +..+. .........++++|+- ..+..+|+..+...
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence 34568999999998666555469999998655432 22221 1123456789999986 43344555543211
Q ss_pred ------CcEEEEEeCCC--c-----eEEE-Eeee-cCCCeEEEEEcCCCCEEEEEeC
Q 015490 279 ------GASIVTWNTTT--W-----KRIR-TKQV-VREPVSSFNVSADGKLLAVGTA 320 (406)
Q Consensus 279 ------~~~i~~~d~~~--~-----~~~~-~~~~-~~~~i~~~~~sp~~~~l~~~~~ 320 (406)
...|.-|.+.. . +.+. .+.. ..+.-..|.|.|||.+.++.+.
T Consensus 109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECC
Confidence 23454454431 1 1111 1110 0123457889999986665443
No 445
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.65 E-value=1.7 Score=40.34 Aligned_cols=155 Identities=12% Similarity=0.179 Sum_probs=91.0
Q ss_pred CCCEEEE-EeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEE-EEEEEcCCCcEEEEEeCCCce-EEEEe
Q 015490 220 DGKFLVS-LGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVL-YIAAITDRGASIVTWNTTTWK-RIRTK 296 (406)
Q Consensus 220 ~~~~l~s-~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~i~~~d~~~~~-~~~~~ 296 (406)
|.++|+. ++....++-.|++.|+.+.....+... -+.|.|..+...+. --+..|-.+..|.-.|.+-.. .+...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv---vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV---VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc---eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence 4444443 445567777888889888887765443 46676654320000 011223345566666765322 22211
Q ss_pred eecCCCeEEEEEcC----CCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEe
Q 015490 297 QVVREPVSSFNVSA----DGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVI 372 (406)
Q Consensus 297 ~~~~~~i~~~~~sp----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~ 372 (406)
. .....+.-.||. .+.++|+++..|.|++||.-.-+....++ +....|..+..+.+|+++++.+. ..+.+-|+
T Consensus 555 e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP-~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~ 631 (776)
T COG5167 555 E-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALP-GLGDAIKHIDVTANGKHILATCK-NYLLLTDV 631 (776)
T ss_pred e-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCc-ccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence 1 112222233332 34599999999999999975444444443 67788999999999998876554 56777776
Q ss_pred c--CCcCCCC
Q 015490 373 E--DKKKSGG 380 (406)
Q Consensus 373 ~--~~~~~~~ 380 (406)
+ .++..+.
T Consensus 632 ~ik~g~~aGr 641 (776)
T COG5167 632 PIKYGQPAGR 641 (776)
T ss_pred ccccCCcccc
Confidence 4 4444443
No 446
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.64 E-value=0.072 Score=52.26 Aligned_cols=93 Identities=15% Similarity=0.130 Sum_probs=60.3
Q ss_pred CcEEEEEeCC--CceEEEEe-----eecCCCeEEEEEcC---CCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEE
Q 015490 279 GASIVTWNTT--TWKRIRTK-----QVVREPVSSFNVSA---DGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTA 348 (406)
Q Consensus 279 ~~~i~~~d~~--~~~~~~~~-----~~~~~~i~~~~~sp---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~ 348 (406)
-|.+.+||+. .|+....+ ......+.-+.|.| +.-++.++-.++.+++........ .+.++|...+..
T Consensus 152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d 229 (1283)
T KOG1916|consen 152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTD 229 (1283)
T ss_pred hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCccc
Confidence 4567777764 33332222 22234556667766 566777787888888877654332 222357666554
Q ss_pred EE-----------EcCCCCeEEEEECCCcEEEEEec
Q 015490 349 LA-----------FSYDSRALVSASMDSSVRVTVIE 373 (406)
Q Consensus 349 ~~-----------~sp~~~~l~s~s~dg~i~iw~~~ 373 (406)
++ .||||..++.++.||.+++|.+.
T Consensus 230 ~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 230 MAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred HHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 43 58999999999999999999874
No 447
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=92.55 E-value=11 Score=36.69 Aligned_cols=202 Identities=15% Similarity=0.125 Sum_probs=105.8
Q ss_pred cEEEEEECCCCCEEEEe-----eCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCC---EEEEE--c
Q 015490 169 QQLALTFDSEGTIFAAG-----SENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGP---GRVWD--L 238 (406)
Q Consensus 169 ~v~~~~~s~~g~~l~~~-----~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~---i~iwd--~ 238 (406)
.+-.++.|||.+++|.+ ++.-++++.|+.+++...... .+....++|.+|++.|.....|.. =++|- +
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i--~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~~ 207 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEI--TNTSGSFAWAADGKTLFYTRLDENHRPDKVWRHRL 207 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhh--cccccceEEecCCCeEEEEEEcCCCCcceEEEEec
Confidence 35567889999998865 334479999999987654332 223578999999998777665432 23443 3
Q ss_pred CC--CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeee--cCCCeEEEEEcCCCCE
Q 015490 239 AS--SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV--VREPVSSFNVSADGKL 314 (406)
Q Consensus 239 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~i~~~~~sp~~~~ 314 (406)
.+ ......+.........++.-+..... +++.+.......+++.+............ ..+--..+. ..+.+
T Consensus 208 gt~~~~d~lvyeE~d~~f~~~v~~s~s~~y---i~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~e--h~~d~ 282 (682)
T COG1770 208 GTPGSSDELVYEEKDDRFFLSVGRSRSEAY---IVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVE--HGGDR 282 (682)
T ss_pred CCCCCcceEEEEcCCCcEEEEeeeccCCce---EEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeee--ecCcE
Confidence 22 11111222222223333433444442 33334445567888888776543222211 112112222 22343
Q ss_pred EE-EEeCCC-cEEEEECCC---ceEEEEeecccccceEEEEEcCCCCeEEEEECC---CcEEEEEecCCcCC
Q 015490 315 LA-VGTASG-DISIIDSSS---LQVRTAVKKAHLGIVTALAFSYDSRALVSASMD---SSVRVTVIEDKKKS 378 (406)
Q Consensus 315 l~-~~~~dg-~i~i~d~~~---~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d---g~i~iw~~~~~~~~ 378 (406)
++ -...+| ..+|+.... ...-..+. .|...+.--.|+--..+|+..-.+ ..|++++..+++..
T Consensus 283 f~i~sN~~gknf~l~~ap~~~~~~~w~~~I-~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~ 353 (682)
T COG1770 283 FYILSNADGKNFKLVRAPVSADKSNWRELI-PHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEER 353 (682)
T ss_pred EEEEecCCCcceEEEEccCCCChhcCeeee-ccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCcee
Confidence 33 333445 456665443 11112222 466665555555555666655433 35888888877653
No 448
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.22 E-value=9.8 Score=35.39 Aligned_cols=146 Identities=9% Similarity=0.130 Sum_probs=84.3
Q ss_pred CCEEEEEeCCCCEEEEEcCCCeee---eecccCCcceEEEEEEEc---CCCCceEEEEEEEcCCCcEEEEEeCCC--ce-
Q 015490 221 GKFLVSLGNRGPGRVWDLASSAVA---TPLAKENDELFASCRFSP---LNNEDYVLYIAAITDRGASIVTWNTTT--WK- 291 (406)
Q Consensus 221 ~~~l~s~s~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~i~~~d~~~--~~- 291 (406)
...|++||..|.++||+...+... ..+...-..+|-.+.... .... ..+.++ .-..+.+|.+.. +.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~-~~LaVL----hP~kl~vY~v~~~~g~~ 111 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSED-LQLAVL----HPRKLSVYSVSLVDGTV 111 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCc-ceEEEe----cCCEEEEEEEEecCCCc
Confidence 358999999999999998654311 122223344555555443 2221 112111 355677776521 11
Q ss_pred ------EEEEeeecC--CCeEEEEEcC----C-CCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeE
Q 015490 292 ------RIRTKQVVR--EPVSSFNVSA----D-GKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRAL 358 (406)
Q Consensus 292 ------~~~~~~~~~--~~i~~~~~sp----~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 358 (406)
.+.....|. .....+++-| . ..+|.+=+.||.+.+|+-+.......+. ..--...+.+.+.-..+
T Consensus 112 ~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp--~~llPgPl~Y~~~tDsf 189 (418)
T PF14727_consen 112 EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP--DFLLPGPLCYCPRTDSF 189 (418)
T ss_pred ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC--CCCCCcCeEEeecCCEE
Confidence 122222222 3344555544 2 3577888899999999987655444443 22223356788877789
Q ss_pred EEEECCCcEEEEEec
Q 015490 359 VSASMDSSVRVTVIE 373 (406)
Q Consensus 359 ~s~s~dg~i~iw~~~ 373 (406)
++++.+..+.-|...
T Consensus 190 vt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 190 VTASSSWTLECYKYQ 204 (418)
T ss_pred EEecCceeEEEecHH
Confidence 999888888888763
No 449
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.73 E-value=1.3 Score=25.55 Aligned_cols=40 Identities=28% Similarity=0.359 Sum_probs=28.5
Q ss_pred CCCCEEEEEeC-CCcEEEEECCCceEEEEeecccccceEEEEE
Q 015490 310 ADGKLLAVGTA-SGDISIIDSSSLQVRTAVKKAHLGIVTALAF 351 (406)
Q Consensus 310 p~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 351 (406)
|++++|+++.. +++|.++|..+++.+..+.. ......++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v--g~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV--GGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC--CCCCceEEe
Confidence 57787777665 78999999999988888762 233345544
No 450
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=91.58 E-value=17 Score=36.95 Aligned_cols=68 Identities=18% Similarity=0.195 Sum_probs=50.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEe----e----------c----ccccceEEEEEcCCCCeEEEEE
Q 015490 301 EPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAV----K----------K----AHLGIVTALAFSYDSRALVSAS 362 (406)
Q Consensus 301 ~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~----------~----~~~~~v~~~~~sp~~~~l~s~s 362 (406)
..|.+++...-+.+++....||+|.++|..+.+.+... . . .+..++..++|||.+..++.-.
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 45677777777789999999999999998877554433 1 0 0111344688999999999999
Q ss_pred CCCcEE
Q 015490 363 MDSSVR 368 (406)
Q Consensus 363 ~dg~i~ 368 (406)
.+|.+.
T Consensus 340 ~~~~~~ 345 (753)
T PF11635_consen 340 EDGKTK 345 (753)
T ss_pred cCCCce
Confidence 999966
No 451
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.38 E-value=2.1 Score=34.46 Aligned_cols=29 Identities=24% Similarity=0.481 Sum_probs=24.5
Q ss_pred cEEEEEECCCC------CEEEEeeCCCeEEEEeCC
Q 015490 169 QQLALTFDSEG------TIFAAGSENGNLRVFKWP 197 (406)
Q Consensus 169 ~v~~~~~s~~g------~~l~~~~~dg~i~vwd~~ 197 (406)
.+..++|||.| .+|++.+.++.|.||.-.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 68899999955 478888999999999865
No 452
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=91.37 E-value=9.3 Score=33.42 Aligned_cols=228 Identities=12% Similarity=0.136 Sum_probs=117.5
Q ss_pred CceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc------ccCcEEEEEECCCCC-------
Q 015490 115 LPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE------NVGQQLALTFDSEGT------- 180 (406)
Q Consensus 115 ~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~s~~g~------- 180 (406)
....|+++|.+.+-++.. .+...+|+-+..+.... .......+. .....+.+.|+....
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~-------~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g 96 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLV-------QDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEG 96 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCC-------ccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCC
Confidence 347899999887666553 66667777652211100 000111111 223456666654322
Q ss_pred -----EEEEeeCCCeEEEEeCCCcce-----Eeeeecc-CCc-eeEEEEcc--CCCEEEEEe-CCCCEEEEEcCCCeeee
Q 015490 181 -----IFAAGSENGNLRVFKWPSLEI-----ILNESEA-HAS-VKDLSFSP--DGKFLVSLG-NRGPGRVWDLASSAVAT 245 (406)
Q Consensus 181 -----~l~~~~~dg~i~vwd~~~~~~-----~~~~~~~-~~~-i~~~~~s~--~~~~l~s~s-~d~~i~iwd~~~~~~~~ 245 (406)
.++.+++||+|.-|.-.-+.. ...+... ... -..+++.. .+.+|..+. ..++|.+||-.-.+...
T Consensus 97 ~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~ 176 (336)
T TIGR03118 97 ITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL 176 (336)
T ss_pred cccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC
Confidence 367778999999998532221 1112111 122 33455543 345555553 57889999864332211
Q ss_pred --ecccC---Cc-ce--EE------EEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeec--CCCeEEEEEc
Q 015490 246 --PLAKE---ND-EL--FA------SCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVV--REPVSSFNVS 309 (406)
Q Consensus 246 --~~~~~---~~-~~--~~------~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~i~~~~~s 309 (406)
.+... .. .+ |. -+.|....... .--..+...|.|-++|+.- +.++++... -...+.|+..
T Consensus 177 ~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~---~d~v~G~G~G~VdvFd~~G-~l~~r~as~g~LNaPWG~a~A 252 (336)
T TIGR03118 177 PGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADR---NDEVAGAGLGYVNVFTLNG-QLLRRVASSGRLNAPWGLAIA 252 (336)
T ss_pred CCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcc---cccccCCCcceEEEEcCCC-cEEEEeccCCcccCCceeeeC
Confidence 01100 00 00 00 11111111000 0012233457899999874 556655322 1344667776
Q ss_pred C------CCCEEEEEeCCCcEEEEECCCceEEEEeeccccc-----ceEEEEEcC
Q 015490 310 A------DGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLG-----IVTALAFSY 353 (406)
Q Consensus 310 p------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~v~~~~~sp 353 (406)
| .|.+|+---.||+|..||..+++.+..+...... ..+.++|..
T Consensus 253 Pa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 253 PESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred hhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 5 4566665556999999999999988877632222 356778765
No 453
>PHA02790 Kelch-like protein; Provisional
Probab=91.12 E-value=15 Score=35.24 Aligned_cols=64 Identities=8% Similarity=0.027 Sum_probs=33.0
Q ss_pred CCCEEEEeeCCC---eEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeee
Q 015490 178 EGTIFAAGSENG---NLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVA 244 (406)
Q Consensus 178 ~g~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~ 244 (406)
+|+..+.|+.++ .+..||.++.+-...-.-....-...+..-+++..+.| |.+.+||.++.+-.
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~ 428 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESSNTWT 428 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCCCcEe
Confidence 677888887653 46788876654332111111111111112345555554 35778888766543
No 454
>PRK13684 Ycf48-like protein; Provisional
Probab=90.83 E-value=12 Score=33.79 Aligned_cols=150 Identities=17% Similarity=0.219 Sum_probs=82.4
Q ss_pred CceeEEEEccCCCEEEEEeCCCCEEE-EEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC
Q 015490 210 ASVKDLSFSPDGKFLVSLGNRGPGRV-WDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT 288 (406)
Q Consensus 210 ~~i~~~~~s~~~~~l~s~s~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~ 288 (406)
..+.++.+.+++.+++++. .|.+.. +| ..++.-..+.......+..+.+.++++- +++ +..|.+++=..+
T Consensus 173 g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~-----~~v--g~~G~~~~~s~d 243 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNL-----WML--ARGGQIRFNDPD 243 (334)
T ss_pred ceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCE-----EEE--ecCCEEEEccCC
Confidence 4788999999887665544 554433 22 1223223333344556788899998862 222 234555432233
Q ss_pred CceEEEEeee----cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee--cccccceEEEEEcCCCCeEEEEE
Q 015490 289 TWKRIRTKQV----VREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK--KAHLGIVTALAFSYDSRALVSAS 362 (406)
Q Consensus 289 ~~~~~~~~~~----~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~s~s 362 (406)
.+..-..... ....+.++.+.|++..++++ .+|.+. .....++.-.... ..-......+.|..+++.++ .+
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G 320 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LG 320 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-EC
Confidence 3322221111 12357889999988766554 567554 3444444333321 11223577788877766655 45
Q ss_pred CCCcEEEEE
Q 015490 363 MDSSVRVTV 371 (406)
Q Consensus 363 ~dg~i~iw~ 371 (406)
..|.|.-|+
T Consensus 321 ~~G~il~~~ 329 (334)
T PRK13684 321 QRGVLLRYV 329 (334)
T ss_pred CCceEEEec
Confidence 678887665
No 455
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.82 E-value=14 Score=34.33 Aligned_cols=145 Identities=9% Similarity=0.049 Sum_probs=78.3
Q ss_pred EEEEEECCCCCEEEEeeCCCeEEEEeCCCcce--EeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCe-----
Q 015490 170 QLALTFDSEGTIFAAGSENGNLRVFKWPSLEI--ILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSA----- 242 (406)
Q Consensus 170 v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~----- 242 (406)
...+..++||.+++.+..-..++-|| .+.. ...-......++.+.|.+++..++++ ..|.+. +....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccc
Confidence 44566778888887765443333344 3332 11122233478999999999877655 455543 3333332
Q ss_pred eeeecccC-CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEe---eecCCCeEEEEEcCCCCEEEEE
Q 015490 243 VATPLAKE-NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTK---QVVREPVSSFNVSADGKLLAVG 318 (406)
Q Consensus 243 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~---~~~~~~i~~~~~sp~~~~l~~~ 318 (406)
........ ....+..+.|.+++. +.++ +..|.+.... ..++.-... ..-...++.+.|.++++.+++|
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~------~~a~-G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G 388 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKE------AWAA-GGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG 388 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCc------EEEE-ECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe
Confidence 12222211 223477888887776 2333 3455554443 333322221 2223568899998877766665
Q ss_pred eCCCcEEEE
Q 015490 319 TASGDISII 327 (406)
Q Consensus 319 ~~dg~i~i~ 327 (406)
.+|.|.-|
T Consensus 389 -~~G~il~~ 396 (398)
T PLN00033 389 -NDGVLLRY 396 (398)
T ss_pred -CCcEEEEe
Confidence 57776554
No 456
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=90.75 E-value=11 Score=33.18 Aligned_cols=139 Identities=10% Similarity=0.101 Sum_probs=81.3
Q ss_pred CEEEEEcCCCeeeeecccC-----CcceEEEEEEEcCCCCc--eEEEEEEEcCCCcEEEEEeCCCceEEEEeeec-----
Q 015490 232 PGRVWDLASSAVATPLAKE-----NDELFASCRFSPLNNED--YVLYIAAITDRGASIVTWNTTTWKRIRTKQVV----- 299 (406)
Q Consensus 232 ~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~----- 299 (406)
.|.+||+.+++.++++..+ ....+..+++....... ...| .+-...+.|.++|+.+++..+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY--ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p 112 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY--ITDSGGPGLIVYDLATGKSWRVLHNSFSPDP 112 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE--EEETTTCEEEEEETTTTEEEEEETCGCTTS-
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE--EeCCCcCcEEEEEccCCcEEEEecCCcceec
Confidence 5777888888877665432 34557777777643311 2333 34445568999999988765544322
Q ss_pred --------------CCCeEEEEEcC---CCCEEEEEeCCCcEEEEECCC-----ce---------EEEEeecccc-cceE
Q 015490 300 --------------REPVSSFNVSA---DGKLLAVGTASGDISIIDSSS-----LQ---------VRTAVKKAHL-GIVT 347 (406)
Q Consensus 300 --------------~~~i~~~~~sp---~~~~l~~~~~dg~i~i~d~~~-----~~---------~~~~~~~~~~-~~v~ 347 (406)
...+..++.+| ++++|+.....+ -++|.+.+ .. .+..+ +.. ....
T Consensus 113 ~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~l--G~k~~~s~ 189 (287)
T PF03022_consen 113 DAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDL--GDKGSQSD 189 (287)
T ss_dssp SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEE--EE---SEC
T ss_pred cccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceec--cccCCCCc
Confidence 12356666655 667777665443 22333221 11 11111 221 3456
Q ss_pred EEEEcCCCCeEEEEECCCcEEEEEecCC
Q 015490 348 ALAFSYDSRALVSASMDSSVRVTVIEDK 375 (406)
Q Consensus 348 ~~~~sp~~~~l~s~s~dg~i~iw~~~~~ 375 (406)
.++.+++|..+++--..+.|..|+..++
T Consensus 190 g~~~D~~G~ly~~~~~~~aI~~w~~~~~ 217 (287)
T PF03022_consen 190 GMAIDPNGNLYFTDVEQNAIGCWDPDGP 217 (287)
T ss_dssp EEEEETTTEEEEEECCCTEEEEEETTTS
T ss_pred eEEECCCCcEEEecCCCCeEEEEeCCCC
Confidence 7888999998888888999999998763
No 457
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=90.71 E-value=1.3 Score=25.23 Aligned_cols=31 Identities=19% Similarity=0.180 Sum_probs=20.4
Q ss_pred EecCCCCceEEEEccCCCeEEEEe--c--CCeEEE
Q 015490 109 LRTDSDLPYRMAIHPHGDGIICAL--Q--NSCRLF 139 (406)
Q Consensus 109 ~~~h~~~v~~~~~sp~~~~l~~~~--~--~~~~i~ 139 (406)
+......-....|+|||+.|+.++ + +...||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 334445667889999999999876 4 455554
No 458
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.64 E-value=0.029 Score=51.10 Aligned_cols=145 Identities=14% Similarity=0.165 Sum_probs=96.8
Q ss_pred eEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceE
Q 015490 213 KDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR 292 (406)
Q Consensus 213 ~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~ 292 (406)
-...|-+++.-++.++.+..+..||-.. +....... ....-.++|..++.. ++......+.+.+||+.+...
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~ag-q~~le~n~--tg~aldm~wDkegdv-----lavlAek~~piylwd~n~eyt 109 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAG-QVILELNP--TGKALDMAWDKEGDV-----LAVLAEKTGPIYLWDVNSEYT 109 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhc-ceecccCC--chhHhhhhhccccch-----hhhhhhcCCCeeechhhhhhH
Confidence 3466788777788888888888888643 32222221 122336788887775 334446788999999986432
Q ss_pred EEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcE
Q 015490 293 IRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSV 367 (406)
Q Consensus 293 ~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i 367 (406)
...-.+....-.-+.|++....++.+...|.+.|++..+.+.....- .|...+++++|.+.+. .+.++.|..+
T Consensus 110 qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~G-kh~RRgtq~av~lEd~-vil~dcd~~L 182 (615)
T KOG2247|consen 110 QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMG-KHQRRGTQIAVTLEDY-VILCDCDNTL 182 (615)
T ss_pred HHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhc-ccccceeEEEecccce-eeecCcHHHH
Confidence 11111112222337899999999999899999999998877666552 3889999999999765 4455555443
No 459
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=90.62 E-value=11 Score=32.96 Aligned_cols=117 Identities=12% Similarity=0.222 Sum_probs=67.3
Q ss_pred CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEe------CCCCEEEEEcCCCeeeeeccc----CCcceEEEE
Q 015490 189 GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLG------NRGPGRVWDLASSAVATPLAK----ENDELFASC 258 (406)
Q Consensus 189 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s------~d~~i~iwd~~~~~~~~~~~~----~~~~~~~~~ 258 (406)
..|++||..+.+-...-.+-.+.|+++.|..+.+.++.|. ....+..||..+..-.. +.. .-..++..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~-~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSS-LGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeee-cCCcccccCCCcEEEE
Confidence 3599999877665544444455899999986666666663 34568889987664322 222 112456666
Q ss_pred EEEcCCCCceEEEEEEE-cCCCcEEEEEeCCCceEEEE-eeecCCCeEEEEE
Q 015490 259 RFSPLNNEDYVLYIAAI-TDRGASIVTWNTTTWKRIRT-KQVVREPVSSFNV 308 (406)
Q Consensus 259 ~~~~~~~~~~~l~~~~~-~~~~~~i~~~d~~~~~~~~~-~~~~~~~i~~~~~ 308 (406)
.+...... .+++... ...+..|..||-.++..+.. .......|..+.+
T Consensus 95 ~~~~~d~~--~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~ 144 (281)
T PF12768_consen 95 TFISNDGS--NFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV 144 (281)
T ss_pred EeeccCCc--eEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence 66443332 1222222 34455688888877666554 2222334555443
No 460
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=90.58 E-value=9.3 Score=32.56 Aligned_cols=142 Identities=11% Similarity=0.114 Sum_probs=78.1
Q ss_pred EEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeC---CCCEEEEEcCC----Ceeeeec-ccCCcceEEEEEEEc
Q 015490 191 LRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGN---RGPGRVWDLAS----SAVATPL-AKENDELFASCRFSP 262 (406)
Q Consensus 191 i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~---d~~i~iwd~~~----~~~~~~~-~~~~~~~~~~~~~~~ 262 (406)
-.+||+.+++.............+-.+.+||++|.+|+. ...+++++... ......- ............-.+
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 457888877654322222224455567899999998875 24588887644 1111100 012223344556677
Q ss_pred CCCCceEEEEEEEcCCCcEEEEEeCCCc--eEEEE--ee-----ecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCce
Q 015490 263 LNNEDYVLYIAAITDRGASIVTWNTTTW--KRIRT--KQ-----VVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQ 333 (406)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~i~~~d~~~~--~~~~~--~~-----~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~ 333 (406)
+|+. ++..|......-+|..... ..... +. .....--.+...|+|+.++.+..+. .|||..+.+
T Consensus 128 DG~v-----lIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~ 200 (243)
T PF07250_consen 128 DGRV-----LIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNT 200 (243)
T ss_pred CCCE-----EEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCe
Confidence 8873 4455555555566654321 11111 11 0011112466679999998887654 667988887
Q ss_pred EEEEee
Q 015490 334 VRTAVK 339 (406)
Q Consensus 334 ~~~~~~ 339 (406)
.++.+.
T Consensus 201 v~~~lP 206 (243)
T PF07250_consen 201 VVRTLP 206 (243)
T ss_pred EEeeCC
Confidence 766664
No 461
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=90.48 E-value=1.3 Score=25.23 Aligned_cols=31 Identities=23% Similarity=0.195 Sum_probs=20.7
Q ss_pred eecCCCeEEEEEcCCCCEEEEEeC-C--CcEEEE
Q 015490 297 QVVREPVSSFNVSADGKLLAVGTA-S--GDISII 327 (406)
Q Consensus 297 ~~~~~~i~~~~~sp~~~~l~~~~~-d--g~i~i~ 327 (406)
...........|||||+.|+..+. + |.-.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 334456788999999998887765 4 555554
No 462
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.47 E-value=15 Score=34.12 Aligned_cols=146 Identities=12% Similarity=0.110 Sum_probs=78.3
Q ss_pred eeEEEEccCCCEEEEEeCCCCEEEEEcCCCeee-eecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc
Q 015490 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVA-TPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW 290 (406)
Q Consensus 212 i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~ 290 (406)
...+..++|+.+++++.....++-||- +... ..+.......+..+.|.+++.- +++ ...|.+.. ....+
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l-----~l~--g~~G~l~~-S~d~G 310 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGL-----WLL--TRGGGLYV-SKGTG 310 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCE-----EEE--eCCceEEE-ecCCC
Confidence 344566778776666654433333443 2221 2223333455788899888872 222 23444433 23222
Q ss_pred e-----EEEEeee--cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee--cccccceEEEEEcCCCCeEEEE
Q 015490 291 K-----RIRTKQV--VREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK--KAHLGIVTALAFSYDSRALVSA 361 (406)
Q Consensus 291 ~-----~~~~~~~--~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~s~ 361 (406)
+ ....... ....+.++.|.+++..+++| ..|.+..-. ..++.-.... ..-....+.+.|.++++.+++
T Consensus 311 ~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~- 387 (398)
T PLN00033 311 LTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL- 387 (398)
T ss_pred CcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE-
Confidence 2 1222221 12358889999888766655 577665543 4444322221 123456889999887776665
Q ss_pred ECCCcEEEE
Q 015490 362 SMDSSVRVT 370 (406)
Q Consensus 362 s~dg~i~iw 370 (406)
+.+|.|.-|
T Consensus 388 G~~G~il~~ 396 (398)
T PLN00033 388 GNDGVLLRY 396 (398)
T ss_pred eCCcEEEEe
Confidence 467876554
No 463
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.31 E-value=16 Score=36.32 Aligned_cols=100 Identities=14% Similarity=0.263 Sum_probs=65.8
Q ss_pred EEEEcCCCcEEEEEeCCC-------c-------------eEEEEeeecCCCeEEEEEc--CCCCEEEEEeCCCcEEEEEC
Q 015490 272 IAAITDRGASIVTWNTTT-------W-------------KRIRTKQVVREPVSSFNVS--ADGKLLAVGTASGDISIIDS 329 (406)
Q Consensus 272 ~~~~~~~~~~i~~~d~~~-------~-------------~~~~~~~~~~~~i~~~~~s--p~~~~l~~~~~dg~i~i~d~ 329 (406)
+++.+.+||.|.+|.+.+ . ++...+.. ...+++++++ ...++||+++....|.||-.
T Consensus 116 VLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf 194 (717)
T PF08728_consen 116 VLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAF 194 (717)
T ss_pred EEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCcceEEEEecCCceEEEEEE
Confidence 445567899999996631 0 01122222 3568899998 78889999988888888765
Q ss_pred CCc--eEEEEeecccccceEEEEEcCCC---C---eEEEEECCCcEEEEEe
Q 015490 330 SSL--QVRTAVKKAHLGIVTALAFSYDS---R---ALVSASMDSSVRVTVI 372 (406)
Q Consensus 330 ~~~--~~~~~~~~~~~~~v~~~~~sp~~---~---~l~s~s~dg~i~iw~~ 372 (406)
... +....-...|...|-+++|-++. . .|++++-.|.+.+|++
T Consensus 195 ~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 195 ALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 432 11111011255568889997743 2 7888899999999988
No 464
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.94 E-value=0.9 Score=44.28 Aligned_cols=73 Identities=21% Similarity=0.206 Sum_probs=43.2
Q ss_pred CCCCEEEEEeCCCcEEEEECCC----ceEEEEe-ecc--------------------cccceEEEEEcC----CCCeEEE
Q 015490 310 ADGKLLAVGTASGDISIIDSSS----LQVRTAV-KKA--------------------HLGIVTALAFSY----DSRALVS 360 (406)
Q Consensus 310 p~~~~l~~~~~dg~i~i~d~~~----~~~~~~~-~~~--------------------~~~~v~~~~~sp----~~~~l~s 360 (406)
++...++++..||.+....... +...... ... ....+..++++. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4556777777788777776653 1111111 100 123355666666 6789999
Q ss_pred EECCCcEEEEEecCCcCCCCch
Q 015490 361 ASMDSSVRVTVIEDKKKSGGLN 382 (406)
Q Consensus 361 ~s~dg~i~iw~~~~~~~~~~~~ 382 (406)
.+.|+++|+||+.+++.+....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999855543
No 465
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.84 E-value=7.5 Score=35.85 Aligned_cols=104 Identities=14% Similarity=0.173 Sum_probs=61.4
Q ss_pred cCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecc--cC-CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEE
Q 015490 208 AHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLA--KE-NDELFASCRFSPLNNEDYVLYIAAITDRGASIVT 284 (406)
Q Consensus 208 ~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~ 284 (406)
..++|.++.||+|.+.+|+--.+++|.+++....+...... .. ....+....|+.... ++.... ..+-+
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e------~A~i~~--~G~e~ 136 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTE------IAFITD--QGIEF 136 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCee------EEEEec--CCeEE
Confidence 34589999999999999999999999999985444332221 11 122366788887744 222222 22334
Q ss_pred EeCCCc-eEEEEeeecCCCeEEEEEcCCCCEEEEEe
Q 015490 285 WNTTTW-KRIRTKQVVREPVSSFNVSADGKLLAVGT 319 (406)
Q Consensus 285 ~d~~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 319 (406)
|-.... +.++..+.+...|.=..|.++-+.+..++
T Consensus 137 y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 137 YQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred EEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 433221 22333444555566677777766544433
No 466
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.44 E-value=16 Score=32.95 Aligned_cols=109 Identities=25% Similarity=0.285 Sum_probs=62.9
Q ss_pred CceEEEEccCCCeEEEEecCC------eEEEEEecccccceeecceeccceee----ecccccCcEEEEEECCCCCEEEE
Q 015490 115 LPYRMAIHPHGDGIICALQNS------CRLFEWDEVENTEIRRLGVKISEKVL----SQLENVGQQLALTFDSEGTIFAA 184 (406)
Q Consensus 115 ~v~~~~~sp~~~~l~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~~ 184 (406)
..-+|++.++|.++++. .+. -+|+.++.. +.....+.++...... .........-+++++|||+.|++
T Consensus 86 D~Egi~~~~~g~~~is~-E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~ 163 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISS-EGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA 163 (326)
T ss_pred ChhHeEEecCCCEEEEe-CCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence 34488886676655544 555 688888866 5555555443221111 33445577899999999996666
Q ss_pred eeC-----CC---------eEEEE--eCCC-cce----Eeeeec-----cCCceeEEEEccCCCEEE
Q 015490 185 GSE-----NG---------NLRVF--KWPS-LEI----ILNESE-----AHASVKDLSFSPDGKFLV 225 (406)
Q Consensus 185 ~~~-----dg---------~i~vw--d~~~-~~~----~~~~~~-----~~~~i~~~~~s~~~~~l~ 225 (406)
+.+ |+ .++++ |..+ ++. ...+.. ....|..+.+.+++++|+
T Consensus 164 ~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv 230 (326)
T PF13449_consen 164 AMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV 230 (326)
T ss_pred EECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
Confidence 533 22 14454 4433 211 222221 233788899998888554
No 467
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=89.19 E-value=3.9 Score=32.90 Aligned_cols=36 Identities=11% Similarity=0.103 Sum_probs=23.7
Q ss_pred eEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC
Q 015490 254 LFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT 289 (406)
Q Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~ 289 (406)
.+..++|||.|-....-.+++.-..++.|.+|....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 678999999664322223445556788898887653
No 468
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=89.17 E-value=18 Score=33.15 Aligned_cols=196 Identities=16% Similarity=0.157 Sum_probs=106.6
Q ss_pred CCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEc----cCCCE--EEEEeC-C---CCEEEEEcC--CCeeee
Q 015490 178 EGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFS----PDGKF--LVSLGN-R---GPGRVWDLA--SSAVAT 245 (406)
Q Consensus 178 ~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s----~~~~~--l~s~s~-d---~~i~iwd~~--~~~~~~ 245 (406)
...+++....++-+.+||++ |+.+..+.. +.++.+..- -+|+. |+.++. + .+|++|.+. ++. +.
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~ 142 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LT 142 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EE
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ce
Confidence 34577777888899999985 455555532 233333321 13443 445543 2 469999775 333 22
Q ss_pred ecccC------CcceEEEEEEE--cCCCCceEEEEEEEcCCCcEEEEEeCC---Cc----eEEEEeeecCCCeEEEEEcC
Q 015490 246 PLAKE------NDELFASCRFS--PLNNEDYVLYIAAITDRGASIVTWNTT---TW----KRIRTKQVVREPVSSFNVSA 310 (406)
Q Consensus 246 ~~~~~------~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~i~~~d~~---~~----~~~~~~~~~~~~i~~~~~sp 310 (406)
.+... .-..++.+++- +.... ++.++ .+.+|.+..|.+. .+ +.++++... ..+..+....
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~---~ya~v-~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~-sQ~EGCVVDD 217 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGA---LYAFV-NGKDGRVEQYELTDDGDGKVSATLVREFKVG-SQPEGCVVDD 217 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT-----EEEEE-EETTSEEEEEEEEE-TTSSEEEEEEEEEE-S-S-EEEEEEET
T ss_pred EcCCCCcccccccccceeeEEeecCCCCc---EEEEE-ecCCceEEEEEEEeCCCCcEeeEEEEEecCC-CcceEEEEec
Confidence 22211 11124455553 33222 33333 3456878777653 32 457777764 5788999999
Q ss_pred CCCEEEEEeCCCcEEEEECCC-----ceEEEEeec-ccccceEEEEEc--CCC-CeEEEEE-CCCcEEEEEecCC-cCCC
Q 015490 311 DGKLLAVGTASGDISIIDSSS-----LQVRTAVKK-AHLGIVTALAFS--YDS-RALVSAS-MDSSVRVTVIEDK-KKSG 379 (406)
Q Consensus 311 ~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~-~~~~~v~~~~~s--p~~-~~l~s~s-~dg~i~iw~~~~~-~~~~ 379 (406)
...+|+.+-++.-|+-|+.+. ++.+..... .....|-.|+.- .++ .||+..+ .+++..||+.+.. ..++
T Consensus 218 e~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g 297 (381)
T PF02333_consen 218 ETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVG 297 (381)
T ss_dssp TTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEE
T ss_pred ccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccc
Confidence 889999999998888888862 222222211 234557777764 343 3555444 5678999998753 3345
Q ss_pred Cch
Q 015490 380 GLN 382 (406)
Q Consensus 380 ~~~ 382 (406)
.|.
T Consensus 298 ~f~ 300 (381)
T PF02333_consen 298 SFR 300 (381)
T ss_dssp EEE
T ss_pred eEE
Confidence 554
No 469
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.17 E-value=0.26 Score=45.26 Aligned_cols=205 Identities=10% Similarity=0.111 Sum_probs=107.3
Q ss_pred CCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCe
Q 015490 113 SDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGN 190 (406)
Q Consensus 113 ~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 190 (406)
++....|+|.-+++.++... .+.+.+|+.+.....+. .+.+...-.-+.|++.+..++.+...|.
T Consensus 74 tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL-------------E~gg~~s~sll~wsKg~~el~ig~~~gn 140 (615)
T KOG2247|consen 74 TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL-------------ESGGTSSKSLLAWSKGTPELVIGNNAGN 140 (615)
T ss_pred chhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH-------------hccCcchHHHHhhccCCccccccccccc
Confidence 45567788888888777665 55555655543321111 1112222223689999999999999999
Q ss_pred EEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee-ecccC-CcceEEEEEEEcCCCCce
Q 015490 191 LRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT-PLAKE-NDELFASCRFSPLNNEDY 268 (406)
Q Consensus 191 i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~ 268 (406)
+.|++..+.+.....-.|...+.+++|.+.+. .+.++.|..+.+-...+..... ...+. .......+.....++-..
T Consensus 141 ~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~v~~qegeta~ltevggepdnm~~~y~k~n~w~kage 219 (615)
T KOG2247|consen 141 IVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTLSVTTQEGETASLTEVGGEPDNMDFFYGKVNGWGKAGE 219 (615)
T ss_pred eEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHHHHHhhhccceeeeeeccCccchhhhheeeeeccccccc
Confidence 99999888777655544777899999999775 5556656544433322211111 11000 000011122211111100
Q ss_pred EEEEEEEcCCCcEEEE---EeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEE
Q 015490 269 VLYIAAITDRGASIVT---WNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVR 335 (406)
Q Consensus 269 ~l~~~~~~~~~~~i~~---~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~ 335 (406)
.+.-+.++ ...+.. -..+....+ .++...+.+.|+.|--||. |..+..-|.|..-++.+++..
T Consensus 220 ~m~sVvsg--Kkhl~yak~nE~D~pval-~fq~~~gni~cyrwylDg~-i~igf~ag~iV~iS~h~aeLg 285 (615)
T KOG2247|consen 220 TMVSVVSG--KKHLMYAKYNELDEPVAL-QFQEKYGNIHCYRWYLDGY-ILIGFDAGYIVSISAHNAELG 285 (615)
T ss_pred eeeeeeec--HHHHHHHhhcCCCCccce-EeeecCCceeEEEEecccc-ccccccceeEEEEeccchHHH
Confidence 11111110 111100 011111222 5555567788999888874 555666666766666665543
No 470
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=88.67 E-value=20 Score=33.08 Aligned_cols=53 Identities=11% Similarity=0.228 Sum_probs=26.0
Q ss_pred CCCEEEEeeCC-----------CeEEEEeCCCcceEeeeeccCCcee-EEEEc-cCCCEEEEEeCC
Q 015490 178 EGTIFAAGSEN-----------GNLRVFKWPSLEIILNESEAHASVK-DLSFS-PDGKFLVSLGNR 230 (406)
Q Consensus 178 ~g~~l~~~~~d-----------g~i~vwd~~~~~~~~~~~~~~~~i~-~~~~s-~~~~~l~s~s~d 230 (406)
++.+++.|+.+ ..+..||..+.+-...-........ ..+.. -+++..+.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 56677777653 2477888776543322111111111 11222 366767777653
No 471
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.36 E-value=9.3 Score=28.94 Aligned_cols=116 Identities=14% Similarity=0.091 Sum_probs=60.8
Q ss_pred EEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECC-----CCCEEEEeeCCCeEE
Q 015490 119 MAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDS-----EGTIFAAGSENGNLR 192 (406)
Q Consensus 119 ~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~g~~l~~~~~dg~i~ 192 (406)
-.|......|+++. .+.+-|+.-......... ....++.+.-...|++++-.+ +...|+.|+. ..+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~------~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~ll 76 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGR------QDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLL 76 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCcccccccc------ccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEE
Confidence 34544555666665 454444432222111100 222344455556677765433 3367777765 5799
Q ss_pred EEeCCCcceEeeeeccCCceeEEEEc---cCCCEEEEEeCCCCEEEEEcCCCe
Q 015490 193 VFKWPSLEIILNESEAHASVKDLSFS---PDGKFLVSLGNRGPGRVWDLASSA 242 (406)
Q Consensus 193 vwd~~~~~~~~~~~~~~~~i~~~~~s---~~~~~l~s~s~d~~i~iwd~~~~~ 242 (406)
.||+.....+.. ..-.+.|+++.+- ....-++..+.+..|.-||....+
T Consensus 77 aYDV~~N~d~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 77 AYDVENNSDLFY-KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred EEEcccCchhhh-hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 999987665532 3334567777662 222234555556677777765433
No 472
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=88.24 E-value=33 Score=35.13 Aligned_cols=139 Identities=12% Similarity=0.123 Sum_probs=78.6
Q ss_pred CccccceeEEecC---CCCceEEEEccCCC-eEEEEe-cCCeEEEEEecccccceeec--ceeccceeeecccccCcEEE
Q 015490 100 SLSDQPVAELRTD---SDLPYRMAIHPHGD-GIICAL-QNSCRLFEWDEVENTEIRRL--GVKISEKVLSQLENVGQQLA 172 (406)
Q Consensus 100 ~~~~~~~~~~~~h---~~~v~~~~~sp~~~-~l~~~~-~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~ 172 (406)
.+...++..+..+ ..+...++|+|... .+|+.. .|...||++..........+ .....+.........+.-..
T Consensus 129 ~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~r 208 (765)
T PF10214_consen 129 RIDPNPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKR 208 (765)
T ss_pred ccccceeEEechhhcCCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCccee
Confidence 4555677777633 34677999998654 555554 77888888721111111111 11111111011112245568
Q ss_pred EEECCCCCEEEEeeCCCeEEEEeCCCcceEeee--eccCCceeEEEEccCCC-EEEEEeCCCCEEEEEcCC
Q 015490 173 LTFDSEGTIFAAGSENGNLRVFKWPSLEIILNE--SEAHASVKDLSFSPDGK-FLVSLGNRGPGRVWDLAS 240 (406)
Q Consensus 173 ~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~ 240 (406)
+.|.++-+.|++++. ..+.++|+++......+ ......|.++.-+++.. +++..+ ...|...++..
T Consensus 209 I~W~~~~~~lLv~~r-~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 209 ILWVSDSNRLLVCNR-SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred eEecCCCCEEEEEcC-CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 899988888877765 57899999877653312 22334888998888722 222222 24677777766
No 473
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=88.12 E-value=21 Score=32.77 Aligned_cols=155 Identities=10% Similarity=0.080 Sum_probs=82.8
Q ss_pred CCCEEEEeeCCCeEEEEeCCCcceEeeeeccC-CceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCC--cce
Q 015490 178 EGTIFAAGSENGNLRVFKWPSLEIILNESEAH-ASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKEN--DEL 254 (406)
Q Consensus 178 ~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~--~~~ 254 (406)
+|+ ++.++.+|.+..+|..+|+......... ..+..-..-.++ .+...+.++.+.-.|..+++..-...... ...
T Consensus 111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~ 188 (370)
T COG1520 111 DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLS 188 (370)
T ss_pred CCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccc
Confidence 666 6677888999999988898877665554 111111222233 34444467888888888777655433221 110
Q ss_pred EEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC----CCeEEEEEcCC-----CCEEEEEeCCCcEE
Q 015490 255 FASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR----EPVSSFNVSAD-----GKLLAVGTASGDIS 325 (406)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~----~~i~~~~~sp~-----~~~l~~~~~dg~i~ 325 (406)
+..-....++ .+++...+. ++.+.-.|..++........+. ..+........ +.-++.++.++.+.
T Consensus 189 ~~~~~~~~~~----~vy~~~~~~-~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~ 263 (370)
T COG1520 189 IYGSPAIASG----TVYVGSDGY-DGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLL 263 (370)
T ss_pred cccCceeecc----eEEEecCCC-cceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEE
Confidence 1000011122 122221111 5577778888877766543221 11100111111 12335666778888
Q ss_pred EEECCCceEEEEee
Q 015490 326 IIDSSSLQVRTAVK 339 (406)
Q Consensus 326 i~d~~~~~~~~~~~ 339 (406)
..|..+++.+-...
T Consensus 264 ~l~~~~G~~~W~~~ 277 (370)
T COG1520 264 CLDADTGELIWSFP 277 (370)
T ss_pred EEEcCCCceEEEEe
Confidence 89999998887775
No 474
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=88.07 E-value=21 Score=32.75 Aligned_cols=152 Identities=14% Similarity=0.077 Sum_probs=83.6
Q ss_pred CCCEEEEeeCCCeEEEEeCCCcceEeeeeccC--CceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceE
Q 015490 178 EGTIFAAGSENGNLRVFKWPSLEIILNESEAH--ASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELF 255 (406)
Q Consensus 178 ~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~ 255 (406)
+|+ ++++..+|.|.-.|.+++..+....... ..+..-....+|+ ++.++.++.++.+|.++|+..-.........+
T Consensus 68 dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 68 DGT-VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred CCe-EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 443 4455778888888888887654333221 2233333333665 77788888899999988887766654431011
Q ss_pred EEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEc--CCCCEEEEEeC--CCcEEEEECCC
Q 015490 256 ASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVS--ADGKLLAVGTA--SGDISIIDSSS 331 (406)
Q Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~s--p~~~~l~~~~~--dg~i~i~d~~~ 331 (406)
.....-.++. +...+.++.+...|..+++..-........-.....+ .....++.+.. ++.+.-.|..+
T Consensus 146 ~~~~v~~~~~-------v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~ 218 (370)
T COG1520 146 ASPPVVGDGT-------VYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAED 218 (370)
T ss_pred ecCcEEcCcE-------EEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccC
Confidence 1122222222 2222367888888888888765544321100001111 12234444444 55677777777
Q ss_pred ceEEEEe
Q 015490 332 LQVRTAV 338 (406)
Q Consensus 332 ~~~~~~~ 338 (406)
+......
T Consensus 219 G~~~w~~ 225 (370)
T COG1520 219 GTLKWSQ 225 (370)
T ss_pred CcEeeee
Confidence 7766553
No 475
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=88.04 E-value=17 Score=31.64 Aligned_cols=155 Identities=14% Similarity=0.107 Sum_probs=90.9
Q ss_pred cCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCc-ceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEe
Q 015490 208 AHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKEND-ELFASCRFSPLNNEDYVLYIAAITDRGASIVTWN 286 (406)
Q Consensus 208 ~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d 286 (406)
..+-+.++.++. ++...+..+.-++|.|+.+......+..-.. ..-.+ |.-.|+. .|+ .+-+..+.++|
T Consensus 85 ~~~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyayg--v~vsGn~---aYV---adlddgfLivd 154 (370)
T COG5276 85 ARDLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYG--VYVSGNY---AYV---ADLDDGFLIVD 154 (370)
T ss_pred hhhhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEE--EEecCCE---EEE---eeccCcEEEEE
Confidence 344567788874 4777777888899999987655443332222 22233 3334442 222 23345566777
Q ss_pred CCCc---eEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecc-cccceEEEEEcCCCCeEEEEE
Q 015490 287 TTTW---KRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKA-HLGIVTALAFSYDSRALVSAS 362 (406)
Q Consensus 287 ~~~~---~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~s~s 362 (406)
+.+. ....+..........++.| |++-..+..|+-+.+.|+.+......+..- ....+.++..+++--+++..
T Consensus 155 vsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy- 231 (370)
T COG5276 155 VSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY- 231 (370)
T ss_pred CCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc-
Confidence 6543 3344444444445677777 778888888999999999765433332211 22367888888775555443
Q ss_pred CCCcEEEEEecCCc
Q 015490 363 MDSSVRVTVIEDKK 376 (406)
Q Consensus 363 ~dg~i~iw~~~~~~ 376 (406)
+--+.+-|..+.+
T Consensus 232 -~egvlivd~s~~s 244 (370)
T COG5276 232 -DEGVLIVDVSGPS 244 (370)
T ss_pred -ccceEEEecCCCC
Confidence 3346666665544
No 476
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=87.66 E-value=25 Score=33.15 Aligned_cols=54 Identities=15% Similarity=0.298 Sum_probs=36.7
Q ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcce--Eeeee-----ccCCceeEEEEccCC
Q 015490 168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEI--ILNES-----EAHASVKDLSFSPDG 221 (406)
Q Consensus 168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~--~~~~~-----~~~~~i~~~~~s~~~ 221 (406)
.....++|.|||++|++--..|.|++++-.++.. +..+. ........|+++|+-
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 4567899999998887754469999998654432 11111 124478999999873
No 477
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=87.52 E-value=13 Score=37.19 Aligned_cols=63 Identities=14% Similarity=0.246 Sum_probs=33.6
Q ss_pred CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecc
Q 015490 68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEV 144 (406)
Q Consensus 68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~ 144 (406)
..+.++++|-|.+++-|...... .+.++.+..+.+| .|.+++.+.+-..+++ -++. ||.|-.+
T Consensus 194 ~kgqvY~cGhG~GGRlG~gdeq~---------~~iPkrV~gL~gh--~~~qisvs~~HslvLT-~~g~--Vys~GlN 256 (1267)
T KOG0783|consen 194 EKGQVYVCGHGAGGRLGFGDEQY---------NFIPKRVPGLIGH--KVIQISVSHTHSLVLT-KFGS--VYSWGLN 256 (1267)
T ss_pred CCCcEEEeccCCCCccCcCcccc---------ccccccccccccc--ceEEEEeecceeEEEe-ecce--EEEeecC
Confidence 34457888877777777642211 1222334445555 4677777776554443 2444 4444443
No 478
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.49 E-value=9.8 Score=31.25 Aligned_cols=149 Identities=15% Similarity=0.142 Sum_probs=78.3
Q ss_pred CCCEEEEEeC--CCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEee
Q 015490 220 DGKFLVSLGN--RGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQ 297 (406)
Q Consensus 220 ~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~ 297 (406)
+|.++.+.+. ...|++||+++++.+........ .+-.--...-+.. ++ ...-.++....+|.++.+++..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~-~~FgEGit~~gd~---~y--~LTw~egvaf~~d~~t~~~lg~~~ 128 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPD-TVFGEGITKLGDY---FY--QLTWKEGVAFKYDADTLEELGRFS 128 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCc-cccccceeeccce---EE--EEEeccceeEEEChHHhhhhcccc
Confidence 4556666654 34699999999988765543311 1111111112222 12 222457888899999988877776
Q ss_pred ecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeec----ccccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490 298 VVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKK----AHLGIVTALAFSYDSRALVSASMDSSVRVTVIE 373 (406)
Q Consensus 298 ~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~ 373 (406)
-. +.=..++ .|++.|..+....+++.-|.++.....++.- ..-..++.+.|- ||...+-.=.+..|..-+.+
T Consensus 129 y~-GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~ 204 (262)
T COG3823 129 YE-GEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPD 204 (262)
T ss_pred cC-Ccceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCC
Confidence 44 3334555 3455566666666777777766544333321 111123344443 34444443344444444555
Q ss_pred CCcCC
Q 015490 374 DKKKS 378 (406)
Q Consensus 374 ~~~~~ 378 (406)
+|+.+
T Consensus 205 sGrV~ 209 (262)
T COG3823 205 SGRVV 209 (262)
T ss_pred CCcEE
Confidence 55443
No 479
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=87.36 E-value=20 Score=31.61 Aligned_cols=171 Identities=13% Similarity=0.115 Sum_probs=84.6
Q ss_pred eEEEEeCCCcceEeeeecc------CCceeEEEEccCC----CEEEEEe--CCCCEEEEEcCCCeeeeecccCC------
Q 015490 190 NLRVFKWPSLEIILNESEA------HASVKDLSFSPDG----KFLVSLG--NRGPGRVWDLASSAVATPLAKEN------ 251 (406)
Q Consensus 190 ~i~vwd~~~~~~~~~~~~~------~~~i~~~~~s~~~----~~l~s~s--~d~~i~iwd~~~~~~~~~~~~~~------ 251 (406)
.|.+||+.+++.++.+.-. .+.+.++.+.... ..+|..+ ..+.|.|+|+.+++.-+.+....
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 5666777777665554322 3367777776522 1334333 34589999999987655443211
Q ss_pred ------------cceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeC---CCc---------eEEEEeeecCCCeEEEE
Q 015490 252 ------------DELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNT---TTW---------KRIRTKQVVREPVSSFN 307 (406)
Q Consensus 252 ------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~---~~~---------~~~~~~~~~~~~i~~~~ 307 (406)
...+..++.+|.......+|....+ ...++-... +.. ..+..+-........++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~ls--s~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~ 192 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLS--SRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMA 192 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT---SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCC--CCcEEEEEHHHhhCccccccccccccceeccccCCCCceEE
Confidence 0113344444422111123322211 111111111 110 01122211123566788
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCce---EEEEee-ccc-ccceEEEEEcC--CCCeEEEEE
Q 015490 308 VSADGKLLAVGTASGDISIIDSSSLQ---VRTAVK-KAH-LGIVTALAFSY--DSRALVSAS 362 (406)
Q Consensus 308 ~sp~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~-~~~-~~~v~~~~~sp--~~~~l~s~s 362 (406)
++++|.+.++--..+.|..|+..+.- ....+. ... -..+.++.+.+ +|.+.+...
T Consensus 193 ~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 193 IDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred ECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 99999888888889999999988611 111221 122 35678999998 777666553
No 480
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=86.99 E-value=3.3 Score=38.02 Aligned_cols=169 Identities=14% Similarity=-0.002 Sum_probs=92.8
Q ss_pred eeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEE-EEEECCCCCEEEE
Q 015490 106 VAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQL-ALTFDSEGTIFAA 184 (406)
Q Consensus 106 ~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~g~~l~~ 184 (406)
+..+..-...|..+-..|||+.+..-....+.++.++...-+..+..+..+. ... ..|+ .+..-..|..+.+
T Consensus 213 i~~L~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg-~~~------~~Vte~l~lL~Gg~SLLv 285 (733)
T COG4590 213 IRLLSVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPG-DSR------HQVTEQLYLLSGGFSLLV 285 (733)
T ss_pred hhhcCCCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCC-chH------HHHHHHHHHHhCceeEEE
Confidence 3335555677888899999999988877888888887654332222111111 000 1111 1122234556777
Q ss_pred eeCCCeEEEE-eCCCc-ce----EeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEE
Q 015490 185 GSENGNLRVF-KWPSL-EI----ILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASC 258 (406)
Q Consensus 185 ~~~dg~i~vw-d~~~~-~~----~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 258 (406)
++.||.|.-| |++.+ .. ++.+.-...++..+.-..+.+-+++-+..|++.++...+.+.+..-.... ....+
T Consensus 286 ~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~--~~~~~ 363 (733)
T COG4590 286 VHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQ--APQLV 363 (733)
T ss_pred EcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhc--Cccee
Confidence 8888888877 44332 21 11111111233333222234457777888888887765544433222111 24468
Q ss_pred EEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc
Q 015490 259 RFSPLNNEDYVLYIAAITDRGASIVTWNTTTW 290 (406)
Q Consensus 259 ~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~ 290 (406)
+++|.+.+ ++ ..+.+.++++.+++.
T Consensus 364 ~~Sp~~~~-----Ll--~e~~gki~~~~l~Nr 388 (733)
T COG4590 364 AMSPNQAY-----LL--SEDQGKIRLAQLENR 388 (733)
T ss_pred eeCcccch-----he--eecCCceEEEEecCC
Confidence 89999885 22 245677888777653
No 481
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.90 E-value=17 Score=38.17 Aligned_cols=31 Identities=26% Similarity=0.588 Sum_probs=26.0
Q ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCC
Q 015490 168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPS 198 (406)
Q Consensus 168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~ 198 (406)
.....++|+|.-+++|.+...|.|++|-...
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccc
Confidence 3456789999999999999999999998543
No 482
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.39 E-value=19 Score=37.98 Aligned_cols=141 Identities=13% Similarity=0.122 Sum_probs=77.6
Q ss_pred EeCCCCEEEEEcCCCeeeeecccCCcceEEEEE-------EEcCCCCceEEEEEEEcCCCcEEEEEeC----CCceE---
Q 015490 227 LGNRGPGRVWDLASSAVATPLAKENDELFASCR-------FSPLNNEDYVLYIAAITDRGASIVTWNT----TTWKR--- 292 (406)
Q Consensus 227 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~i~~~d~----~~~~~--- 292 (406)
.+.|+.+.+|+.+++.....+.......+.-.- |-|.=++ ++++++ --.|.++-+ .++..
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~Iqh---lLvvaT---~~ei~ilgV~~~~~~~~~~~f 168 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQH---LLVVAT---PVEIVILGVSFDEFTGELSIF 168 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhhe---eEEecc---cceEEEEEEEeccccCccccc
Confidence 456889999999987666655443322221111 2222232 222222 223333322 11111
Q ss_pred --EEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEE--EECCCc---e---E--------------EEEeecccccceEE
Q 015490 293 --IRTKQVVREPVSSFNVSADGKLLAVGTASGDISI--IDSSSL---Q---V--------------RTAVKKAHLGIVTA 348 (406)
Q Consensus 293 --~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i--~d~~~~---~---~--------------~~~~~~~~~~~v~~ 348 (406)
...+......|.++....+|+.+++| .||.|+= |....+ + . +..+...+..+|..
T Consensus 169 ~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~q 247 (1311)
T KOG1900|consen 169 NTSFKISVDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQ 247 (1311)
T ss_pred ccceeeecCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCccee
Confidence 11222234568888877888766665 4554432 222211 1 0 00111245678999
Q ss_pred EEEcCCCCeEEEEECCCcEEEEEecC
Q 015490 349 LAFSYDSRALVSASMDSSVRVTVIED 374 (406)
Q Consensus 349 ~~~sp~~~~l~s~s~dg~i~iw~~~~ 374 (406)
+.....-..+.+-+..|+|.+|++..
T Consensus 248 i~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 248 ITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eEeccccceeeeeccCceEEEEEccC
Confidence 99988888889999999999999976
No 483
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.06 E-value=4 Score=39.78 Aligned_cols=71 Identities=18% Similarity=0.293 Sum_probs=43.7
Q ss_pred CCCCEEEEeeCCCeEEEEeCCC----cceEee-eec---------------------cCCceeEEEEcc----CCCEEEE
Q 015490 177 SEGTIFAAGSENGNLRVFKWPS----LEIILN-ESE---------------------AHASVKDLSFSP----DGKFLVS 226 (406)
Q Consensus 177 ~~g~~l~~~~~dg~i~vwd~~~----~~~~~~-~~~---------------------~~~~i~~~~~s~----~~~~l~s 226 (406)
++...++.+..||.+....... +..... ... .......++.+. +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4666788888899888887653 111110 000 012345566655 6779999
Q ss_pred EeCCCCEEEEEcCCCeeeeec
Q 015490 227 LGNRGPGRVWDLASSAVATPL 247 (406)
Q Consensus 227 ~s~d~~i~iwd~~~~~~~~~~ 247 (406)
.+.|+++|+||+.+++++...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999985543
No 484
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=86.03 E-value=37 Score=33.49 Aligned_cols=164 Identities=12% Similarity=0.194 Sum_probs=87.3
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc--eEeeeeccCC--ceeEEEEcc------CCCEEEEEeC-C---C
Q 015490 166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLE--IILNESEAHA--SVKDLSFSP------DGKFLVSLGN-R---G 231 (406)
Q Consensus 166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~--~i~~~~~s~------~~~~l~s~s~-d---~ 231 (406)
-...+..+.|.++++.+++...+|.|.+||...+. .+..+...+. -+.+ .|-+ ...++++.+. + -
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~ 206 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKL 206 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCcE
Confidence 45778899999999999999999999999993322 1111211111 1111 2211 2334444443 2 2
Q ss_pred CEEEEEcC-CCeeeeecc--cCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC------CC
Q 015490 232 PGRVWDLA-SSAVATPLA--KENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR------EP 302 (406)
Q Consensus 232 ~i~iwd~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~------~~ 302 (406)
..+++.+. .......+. ..+........|+-.... +|.+ .++.|.+|++.+.+...++.... ..
T Consensus 207 ~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~---LY~l----~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~ 279 (670)
T PF10395_consen 207 SYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGK---LYQL----SKKTISSYSIPNFQIQKTISLPSIIDKESDD 279 (670)
T ss_pred EEEEEEeccCCcceEEeehheeccCCcccceEEEeCCE---EEEE----eCCEEEEEEcCCceEEEEEEechhhcccccc
Confidence 45677771 112222221 011111223333333322 4444 47899999998887777765541 12
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee
Q 015490 303 VSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK 339 (406)
Q Consensus 303 i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 339 (406)
+.++. .|..+.++.+ .++.|++.|+.-...+..+.
T Consensus 280 ~vSl~-~~s~nRvLLs-~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 280 LVSLK-PPSPNRVLLS-VNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred ceEee-cCCCCeEEEE-cCCEEEEEeehhhhhhhhhh
Confidence 33333 2333344443 46789999987555554443
No 485
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=85.83 E-value=31 Score=32.37 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=25.1
Q ss_pred ceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490 345 IVTALAFSYDSRALVSASMDSSVRVTVIED 374 (406)
Q Consensus 345 ~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~ 374 (406)
.|.++...+..+.|++.+.+|.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 388999988889999999999999999975
No 486
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=85.75 E-value=26 Score=31.42 Aligned_cols=65 Identities=15% Similarity=0.213 Sum_probs=33.0
Q ss_pred CCCEEEEeeCC-----CeEEEEeCCCcceE---eeeeccCCce--eEEEEccCCCEEEEEeC-----CCCEEEEEcCCCe
Q 015490 178 EGTIFAAGSEN-----GNLRVFKWPSLEII---LNESEAHASV--KDLSFSPDGKFLVSLGN-----RGPGRVWDLASSA 242 (406)
Q Consensus 178 ~g~~l~~~~~d-----g~i~vwd~~~~~~~---~~~~~~~~~i--~~~~~s~~~~~l~s~s~-----d~~i~iwd~~~~~ 242 (406)
++.+++.|+.+ ..+..||+.+.+.. ..+..-..+. .+++. -+++..+.|+. ...+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 45666677654 35777777665431 1111111111 12222 24566666664 2357888987654
Q ss_pred e
Q 015490 243 V 243 (406)
Q Consensus 243 ~ 243 (406)
-
T Consensus 151 W 151 (323)
T TIGR03548 151 W 151 (323)
T ss_pred e
Confidence 3
No 487
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=84.98 E-value=44 Score=33.31 Aligned_cols=167 Identities=18% Similarity=0.245 Sum_probs=88.2
Q ss_pred cccCcEEEEEECCCCCEEEEeeCCC----eEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCC
Q 015490 165 ENVGQQLALTFDSEGTIFAAGSENG----NLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLAS 240 (406)
Q Consensus 165 ~~~~~v~~~~~s~~g~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~ 240 (406)
.....+..+.|+|+|..++..+.++ .+++.+.. + .+......+....|+++++.++....++..+. .
T Consensus 57 ~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~----~ 127 (620)
T COG1506 57 TFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G----LITKTAFGVSDARWSPDGDRIAFLTAEGASKR----D 127 (620)
T ss_pred ccCCcccccccCCCCCEEEEEeccCCCcceEEEEecC-C----ceeeeecccccceeCCCCCeEEEEeccccccc----C
Confidence 3456678889999999998877333 23344433 2 23333447888999999998887322221000 0
Q ss_pred CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC
Q 015490 241 SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA 320 (406)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~ 320 (406)
+. ..+. ... ..+.|...+ .....+.+.|..+ ...........+....++++++.++....
T Consensus 128 ~~--~~~~---~~~-~~~~~~~~g------------~~~~~l~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (620)
T COG1506 128 GG--DHLF---VDR-LPVWFDGRG------------GERSDLYVVDIES--KLIKLGLGNLDVVSFATDGDGRLVASIRL 187 (620)
T ss_pred Cc--eeee---ecc-cceeecCCC------------CcccceEEEccCc--ccccccCCCCceeeeeeCCCCceeEEeee
Confidence 00 0000 000 001111111 1344555666654 22333334456777777777777776554
Q ss_pred CCc-------EEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEE
Q 015490 321 SGD-------ISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSAS 362 (406)
Q Consensus 321 dg~-------i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s 362 (406)
+.. ..++...++...... .....+..+.|.++|+.++..+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~gk~~~~~~ 234 (620)
T COG1506 188 DDDADPWVTNLYVLIEGNGELESLT--PGEGSISKLAFDADGKSIALLG 234 (620)
T ss_pred ccccCCceEeeEEEecCCCceEEEc--CCCceeeeeeeCCCCCeeEEec
Confidence 332 233333344443333 3555688889999988555443
No 488
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=84.74 E-value=30 Score=31.19 Aligned_cols=156 Identities=17% Similarity=0.223 Sum_probs=88.4
Q ss_pred ceeEEEEccCCCEEEEEeCCCC------EEEEEcCC--C--eee-----eecccCCcc-------eEEEEEEEcCCCCce
Q 015490 211 SVKDLSFSPDGKFLVSLGNRGP------GRVWDLAS--S--AVA-----TPLAKENDE-------LFASCRFSPLNNEDY 268 (406)
Q Consensus 211 ~i~~~~~s~~~~~l~s~s~d~~------i~iwd~~~--~--~~~-----~~~~~~~~~-------~~~~~~~~~~~~~~~ 268 (406)
.++.+.+.+++..+++.++++. +..+++.. + ..+ ..+....+. -..++++.+++.
T Consensus 21 GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~--- 97 (326)
T PF13449_consen 21 GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS--- 97 (326)
T ss_pred cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC---
Confidence 6788888876666777777777 65555543 1 000 111111111 234677866665
Q ss_pred EEEEEEEcCCC------cEEEEEeCCCceEEEEee---------------ecCCCeEEEEEcCCCCEEEEEeC-----CC
Q 015490 269 VLYIAAITDRG------ASIVTWNTTTWKRIRTKQ---------------VVREPVSSFNVSADGKLLAVGTA-----SG 322 (406)
Q Consensus 269 ~l~~~~~~~~~------~~i~~~d~~~~~~~~~~~---------------~~~~~i~~~~~sp~~~~l~~~~~-----dg 322 (406)
+..+...+ ..|+.++.. ++....+. .......+|+++|+|+.|+++.+ |+
T Consensus 98 ---~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~ 173 (326)
T PF13449_consen 98 ---FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDG 173 (326)
T ss_pred ---EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCC
Confidence 33444556 788888876 55444331 12346789999999997766544 22
Q ss_pred --c-------EEE--EECCC-ceEEEEe--ecc------cccceEEEEEcCCCCeEEEEE-----CCCcEEEEEec
Q 015490 323 --D-------ISI--IDSSS-LQVRTAV--KKA------HLGIVTALAFSYDSRALVSAS-----MDSSVRVTVIE 373 (406)
Q Consensus 323 --~-------i~i--~d~~~-~~~~~~~--~~~------~~~~v~~~~~sp~~~~l~s~s-----~dg~i~iw~~~ 373 (406)
. +++ ||..+ ++....+ ... ....+..+.+-+++++|+-=- ....++|+.+.
T Consensus 174 ~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 174 PRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred cccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 1 444 45544 2222222 111 345688999999998776432 23456666554
No 489
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=84.48 E-value=27 Score=30.49 Aligned_cols=196 Identities=10% Similarity=-0.008 Sum_probs=102.9
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeee-
Q 015490 166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVA- 244 (406)
Q Consensus 166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~- 244 (406)
..+-+..+.++. ++...+..+.-++|.|+.+......+..-.-.=..-.|.-.|++..++..|.-+.+.|+.+....
T Consensus 85 ~~~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 85 ARDLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCce
Confidence 345566677765 46666667778999999776544322111110122334445888888887777888898764432
Q ss_pred --eecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce---EEEEeeecCCCeEEEEEcCCCCEEEEEe
Q 015490 245 --TPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK---RIRTKQVVREPVSSFNVSADGKLLAVGT 319 (406)
Q Consensus 245 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 319 (406)
.+...... ....++.+-+.. .....++-+.+.|+.... .+.... ....+.++..+++..+++...
T Consensus 163 lagrya~~~~-d~~~v~ISGn~A--------YvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy~ 232 (370)
T COG5276 163 LAGRYALPGG-DTHDVAISGNYA--------YVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVYD 232 (370)
T ss_pred eeeeeccCCC-CceeEEEecCeE--------EEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEcc
Confidence 22222211 123444544322 222457778888886543 222222 223678888888766666543
Q ss_pred CCCcEEEEECCCceEEEEeecccccceEEE-EEcCCCCeEEEEECCCcEEEEEecCC
Q 015490 320 ASGDISIIDSSSLQVRTAVKKAHLGIVTAL-AFSYDSRALVSASMDSSVRVTVIEDK 375 (406)
Q Consensus 320 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~-~~sp~~~~l~s~s~dg~i~iw~~~~~ 375 (406)
--+.+-|..+.+....+-.-....+.++ .+.-.+++......+.-+.+-|++++
T Consensus 233 --egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 233 --EGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred --cceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCC
Confidence 3366677765543333221111112111 12222444444555555555555543
No 490
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=83.84 E-value=6.1 Score=22.56 Aligned_cols=35 Identities=20% Similarity=0.037 Sum_probs=24.5
Q ss_pred EEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEE
Q 015490 273 AAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNV 308 (406)
Q Consensus 273 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 308 (406)
.++...++.|.++|..+++.+..+..... ...++|
T Consensus 7 yv~~~~~~~v~~id~~~~~~~~~i~vg~~-P~~i~~ 41 (42)
T TIGR02276 7 YVTNSGSNTVSVIDTATNKVIATIPVGGY-PFGVAV 41 (42)
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEECCCC-CceEEe
Confidence 34456688999999999888887776433 345554
No 491
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=83.76 E-value=34 Score=31.04 Aligned_cols=53 Identities=9% Similarity=0.168 Sum_probs=26.6
Q ss_pred CCCEEEEeeCC-----------CeEEEEeCCCcceEeeeeccCCceeEE-EE-ccCCCEEEEEeCC
Q 015490 178 EGTIFAAGSEN-----------GNLRVFKWPSLEIILNESEAHASVKDL-SF-SPDGKFLVSLGNR 230 (406)
Q Consensus 178 ~g~~l~~~~~d-----------g~i~vwd~~~~~~~~~~~~~~~~i~~~-~~-s~~~~~l~s~s~d 230 (406)
++++.+.|+.+ ..+..||..+.+-.............. +. .-+++..+.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 56777777653 247778877655332211111111111 11 2367777777653
No 492
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=82.43 E-value=33 Score=34.01 Aligned_cols=68 Identities=18% Similarity=0.291 Sum_probs=43.4
Q ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEc
Q 015490 168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDL 238 (406)
Q Consensus 168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~ 238 (406)
..++++.-+|.|+.++.+..||.|++|++....... +.....+-..+.|...| |+++..|..+.-|.-
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk-i~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK-ICEEAKPKENLVFTNHG--LVTATSDRRALAWKE 82 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhh-hhhhcCCccceeeeccc--eEEEeccchhheeec
Confidence 456778888999999999999999999986543321 11112233445554433 555666666666643
No 493
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=82.18 E-value=12 Score=37.33 Aligned_cols=72 Identities=15% Similarity=0.206 Sum_probs=49.0
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeecc---CCceeEEEEccCCCEEEEEeCCCCEEEEEcCCC
Q 015490 166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEA---HASVKDLSFSPDGKFLVSLGNRGPGRVWDLASS 241 (406)
Q Consensus 166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~ 241 (406)
+..+|...++..| ++.++.+|.|.++...+.........| ...|+++....++-+++.++.| .+++++.++.
T Consensus 625 g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~-~~rlfhtetl 699 (925)
T KOG3522|consen 625 GSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGD-EERLFHTETL 699 (925)
T ss_pred CCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCC-EEEEeccccc
Confidence 4467777777755 556778999999998776555444333 3479999998777666666655 5666555443
No 494
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=80.91 E-value=15 Score=25.75 Aligned_cols=56 Identities=21% Similarity=0.317 Sum_probs=0.0
Q ss_pred EEEEEcCC-CCEEEE-----------------EeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEE
Q 015490 304 SSFNVSAD-GKLLAV-----------------GTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSA 361 (406)
Q Consensus 304 ~~~~~sp~-~~~l~~-----------------~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~ 361 (406)
..+++.++ |...++ +..+|.+..||..+++....+. .-...+.+++++|+.+|+.+
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~--~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD--GLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE--EESSEEEEEE-TTSSEEEEE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh--CCCccCeEEEcCCCCEEEEE
No 495
>PRK13613 lipoprotein LpqB; Provisional
Probab=79.75 E-value=66 Score=31.76 Aligned_cols=192 Identities=12% Similarity=0.092 Sum_probs=100.9
Q ss_pred cEEEEEECCCCCEEEEeeCCC-eEEEEeCCCcce----EeeeeccCCceeEEEEccCCCEEEEEeC--CCC--EEEEEcC
Q 015490 169 QQLALTFDSEGTIFAAGSENG-NLRVFKWPSLEI----ILNESEAHASVKDLSFSPDGKFLVSLGN--RGP--GRVWDLA 239 (406)
Q Consensus 169 ~v~~~~~s~~g~~l~~~~~dg-~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~s~s~--d~~--i~iwd~~ 239 (406)
.+.+.+.|+++..+|....++ .+++..+..+.. ...... ...++...|.+++ .+-+... ++. +++..-
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~-~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~~- 440 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA-DGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQG- 440 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeec-cCcccCCcCcCCC-CEEEecCCCCCceEEEEEcC-
Confidence 567889999998888776655 455555433322 111111 2246777888777 4555422 222 555543
Q ss_pred CCeeee-ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeC---CCce-EEE---EeeecCCCeEEEEEcCC
Q 015490 240 SSAVAT-PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNT---TTWK-RIR---TKQVVREPVSSFNVSAD 311 (406)
Q Consensus 240 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~---~~~~-~~~---~~~~~~~~i~~~~~sp~ 311 (406)
+++... ......+..|..+..+++|.+ +.++......+.|++=-+ ..+. .+. .+...-..+.+++|..+
T Consensus 441 ~G~~~~V~~~~l~g~~I~~lrvSrDG~R---vAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~~ 517 (599)
T PRK13613 441 DGEPVEVRTPELDGHRVVAVRVARDGVR---VALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSWAGD 517 (599)
T ss_pred CCcEEEeeccccCCCEeEEEEECCCccE---EEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEEcCC
Confidence 344321 111122336999999999986 222333333455544322 1222 111 11112245889999999
Q ss_pred CCEEEEEeC-C--CcEEEEECCCceEEEEeecccccceEEEEEcCCCC-eEEEEECCCcE
Q 015490 312 GKLLAVGTA-S--GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSR-ALVSASMDSSV 367 (406)
Q Consensus 312 ~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~s~dg~i 367 (406)
+.+++.+.. + ..+++.++.......... ..-..+..++-..+.+ .++.+..++.|
T Consensus 518 ~sL~Vlg~~~~~~~~v~~v~vdG~~~~~~~~-~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 518 SQLVVLGREEGGVQQARYVQVDGSTPPASAP-AAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred CEEEEEeccCCCCcceEEEecCCcCcccccc-cCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 988776643 2 345555555333221121 2444566667666655 45553555554
No 496
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=79.55 E-value=25 Score=26.72 Aligned_cols=115 Identities=10% Similarity=0.023 Sum_probs=63.0
Q ss_pred EEECCCCCEEEEeeCCCeEEEEeCCCcce-------EeeeeccCCceeEEEEcc-----CCCEEEEEeCCCCEEEEEcCC
Q 015490 173 LTFDSEGTIFAAGSENGNLRVFKWPSLEI-------ILNESEAHASVKDLSFSP-----DGKFLVSLGNRGPGRVWDLAS 240 (406)
Q Consensus 173 ~~~s~~g~~l~~~~~dg~i~vwd~~~~~~-------~~~~~~~~~~i~~~~~s~-----~~~~l~s~s~d~~i~iwd~~~ 240 (406)
-.|......|+.++.-|.|.|++...... ...+..-...|++++--+ +...|+.|+ ..++..||+..
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVEN 82 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEccc
Confidence 34555556788888888999998653321 112333344667665433 233565555 45899999987
Q ss_pred CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEE
Q 015490 241 SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRI 293 (406)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~ 293 (406)
...+..-.. ...+.++.+-.-+.....+. ..+.+..|.-||....+..
T Consensus 83 N~d~Fyke~--~DGvn~i~~g~~~~~~~~l~---ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 83 NSDLFYKEV--PDGVNAIVIGKLGDIPSPLV---IVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred CchhhhhhC--ccceeEEEEEecCCCCCcEE---EECceEEEEEeCCCCcEEE
Confidence 655433222 23356666644333211222 2245667777776654443
No 497
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=79.12 E-value=86 Score=32.68 Aligned_cols=173 Identities=18% Similarity=0.162 Sum_probs=93.0
Q ss_pred eEEEEeCCCcceEeeeeccCC----ceeEEEEccCCC--EEEEEeC-----------CCCEEEEEcCC-CeeeeecccCC
Q 015490 190 NLRVFKWPSLEIILNESEAHA----SVKDLSFSPDGK--FLVSLGN-----------RGPGRVWDLAS-SAVATPLAKEN 251 (406)
Q Consensus 190 ~i~vwd~~~~~~~~~~~~~~~----~i~~~~~s~~~~--~l~s~s~-----------d~~i~iwd~~~-~~~~~~~~~~~ 251 (406)
.|+++|..+++.+..+....+ .+..+.|+.... +++++.. +|.++.|++-. ++ ...+..+.
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~-~lellh~T 932 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGD-KLELLHKT 932 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCc-eeeeeecc
Confidence 477888777766554443332 566677765333 3444332 34466666532 33 11222111
Q ss_pred cceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeee--cCCCeEEEEEcCCCCEEEEEeCCCcEEE--E
Q 015490 252 DELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV--VREPVSSFNVSADGKLLAVGTASGDISI--I 327 (406)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~i~~~~~sp~~~~l~~~~~dg~i~i--~ 327 (406)
.-.-.-.+..|.... +++ +-...+++||+...+.++.... -...|+.+++. +..+++|...-.|.+ |
T Consensus 933 ~~~~~v~Ai~~f~~~-----~La--gvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y 1003 (1205)
T KOG1898|consen 933 EIPGPVGAICPFQGR-----VLA--GVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRY 1003 (1205)
T ss_pred CCCccceEEeccCCE-----EEE--ecccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEE
Confidence 212223566777664 222 3467899999987766554332 23456677665 667888877555554 4
Q ss_pred ECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490 328 DSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIE 373 (406)
Q Consensus 328 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~ 373 (406)
+-...+.+......-...|+++.+-..+ .++.+..=|.+.+-.+.
T Consensus 1004 ~~~~n~l~~fadD~~pR~Vt~~~~lD~~-tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1004 RREDNQLIVFADDPVPRHVTALELLDYD-TVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred ecCCCeEEEEeCCCccceeeEEEEecCC-ceeeccccCcEEEEECC
Confidence 4444444333322334457766665443 46656555666666553
No 498
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=78.99 E-value=62 Score=31.00 Aligned_cols=145 Identities=13% Similarity=0.099 Sum_probs=65.9
Q ss_pred CCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCc--ceEEEEEEEcCC
Q 015490 187 ENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKEND--ELFASCRFSPLN 264 (406)
Q Consensus 187 ~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 264 (406)
..+...++|. .|.....+.........+...++|.+++..+ ..++.+|+- |+.......... ..-..+...|+|
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCC
Confidence 3455666663 4444444333222222266778888776555 678888874 554443322211 112245667777
Q ss_pred CCceEEEEEEE----------cCCCcEEEEEeCCCceEEEEeeecC---------------------------CCeEEEE
Q 015490 265 NEDYVLYIAAI----------TDRGASIVTWNTTTWKRIRTKQVVR---------------------------EPVSSFN 307 (406)
Q Consensus 265 ~~~~~l~~~~~----------~~~~~~i~~~d~~~~~~~~~~~~~~---------------------------~~i~~~~ 307 (406)
+. ++++.. ......|..+| .+++.+....... ..+.++.
T Consensus 202 n~---L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~ 277 (477)
T PF05935_consen 202 NL---LILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSID 277 (477)
T ss_dssp -E---EEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEE
T ss_pred CE---EEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccE
Confidence 63 222220 01122355555 5665554432110 2478899
Q ss_pred EcC-CCCEEEEEeCCCcEEEEECCCceEEEEee
Q 015490 308 VSA-DGKLLAVGTASGDISIIDSSSLQVRTAVK 339 (406)
Q Consensus 308 ~sp-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 339 (406)
+.+ ++.+|+++-.-..|...|.++++....+-
T Consensus 278 yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg 310 (477)
T PF05935_consen 278 YDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILG 310 (477)
T ss_dssp EETTTTEEEEEETTT-EEEEEE-TTS-EEEEES
T ss_pred EeCCCCeEEEEcCcceEEEEEECCCCcEEEEeC
Confidence 999 45455554445589999988888877764
No 499
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=78.30 E-value=16 Score=37.23 Aligned_cols=78 Identities=26% Similarity=0.244 Sum_probs=48.1
Q ss_pred CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEE-EeCCC-----CEEEEEcCCCee-eeecccCCcceEEEEEE
Q 015490 188 NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVS-LGNRG-----PGRVWDLASSAV-ATPLAKENDELFASCRF 260 (406)
Q Consensus 188 dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s-~s~d~-----~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~ 260 (406)
.+.|.+-|.........-......|.+.+|||||+.|+. .+.++ .|++-|+.+... ...+... ...|..-..
T Consensus 328 ~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve-~aaiprwrv 406 (912)
T TIGR02171 328 TGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVE-NAAIPRWRV 406 (912)
T ss_pred CCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecc-cccccceEe
Confidence 358888887665544331455668999999999999998 44443 488888875332 2333322 333444445
Q ss_pred EcCCCC
Q 015490 261 SPLNNE 266 (406)
Q Consensus 261 ~~~~~~ 266 (406)
..+|..
T Consensus 407 ~e~gdt 412 (912)
T TIGR02171 407 LENGDT 412 (912)
T ss_pred cCCCCe
Confidence 555553
No 500
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.65 E-value=91 Score=32.18 Aligned_cols=69 Identities=12% Similarity=0.105 Sum_probs=41.2
Q ss_pred EECCCCCEEEEeeCCCeEEEEeCCCcceEe---e------eec--cCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCe
Q 015490 174 TFDSEGTIFAAGSENGNLRVFKWPSLEIIL---N------ESE--AHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSA 242 (406)
Q Consensus 174 ~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~---~------~~~--~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~ 242 (406)
++..-|+.+..|+.+|.+.+|.+....... . +.. +..+|..+...+.-..++ .-.|+.+.++++.+.+
T Consensus 21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll-~l~dsqi~~~~l~~~~ 99 (877)
T KOG2063|consen 21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLL-ILSDSQIAVHKLPELE 99 (877)
T ss_pred HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchh-eecCCcceeeecCccc
Confidence 344467889999999999999986442111 1 000 123555555554433333 3446788888876655
Q ss_pred e
Q 015490 243 V 243 (406)
Q Consensus 243 ~ 243 (406)
.
T Consensus 100 ~ 100 (877)
T KOG2063|consen 100 P 100 (877)
T ss_pred c
Confidence 4
Done!