Query 015492
Match_columns 406
No_of_seqs 223 out of 1766
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 06:49:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015492.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015492hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02851 3-hydroxyisobutyryl-C 100.0 1.6E-72 3.6E-77 562.1 41.7 406 1-406 1-407 (407)
2 PLN02157 3-hydroxyisobutyryl-C 100.0 5.3E-68 1.2E-72 530.0 39.2 365 40-404 36-400 (401)
3 PLN02988 3-hydroxyisobutyryl-C 100.0 6.6E-68 1.4E-72 527.7 38.8 365 42-406 10-378 (381)
4 PLN02874 3-hydroxyisobutyryl-C 100.0 2.6E-66 5.6E-71 518.1 38.8 362 40-404 10-371 (379)
5 KOG1684 Enoyl-CoA hydratase [L 100.0 1.1E-64 2.4E-69 479.9 31.5 379 22-405 20-401 (401)
6 PRK05617 3-hydroxyisobutyryl-C 100.0 7.3E-63 1.6E-67 487.6 35.0 338 41-387 3-342 (342)
7 PRK05980 enoyl-CoA hydratase; 100.0 9.4E-54 2E-58 408.8 27.9 257 40-368 2-260 (260)
8 PRK09076 enoyl-CoA hydratase; 100.0 2.8E-53 6E-58 405.0 28.8 255 39-370 1-257 (258)
9 PRK08150 enoyl-CoA hydratase; 100.0 5.7E-53 1.2E-57 402.0 28.0 252 42-371 3-255 (255)
10 PRK05862 enoyl-CoA hydratase; 100.0 5.1E-53 1.1E-57 403.0 27.6 252 41-370 4-256 (257)
11 PRK06142 enoyl-CoA hydratase; 100.0 5.3E-53 1.1E-57 406.2 27.6 258 41-370 6-272 (272)
12 PRK08140 enoyl-CoA hydratase; 100.0 7.2E-53 1.6E-57 403.2 28.0 258 40-370 3-261 (262)
13 PRK09245 enoyl-CoA hydratase; 100.0 6.8E-53 1.5E-57 404.2 27.7 260 39-370 1-265 (266)
14 PRK09674 enoyl-CoA hydratase-i 100.0 7.2E-53 1.6E-57 401.5 27.2 252 41-370 2-254 (255)
15 PRK08258 enoyl-CoA hydratase; 100.0 1.2E-52 2.7E-57 404.5 29.0 258 41-370 17-276 (277)
16 PRK07657 enoyl-CoA hydratase; 100.0 9.7E-53 2.1E-57 401.8 27.7 256 39-370 1-259 (260)
17 PRK07799 enoyl-CoA hydratase; 100.0 1.3E-52 2.9E-57 401.5 28.4 255 41-370 5-262 (263)
18 PRK07658 enoyl-CoA hydratase; 100.0 1.3E-52 2.9E-57 400.2 27.2 253 42-370 3-256 (257)
19 PRK06127 enoyl-CoA hydratase; 100.0 2.2E-52 4.7E-57 401.1 28.7 258 39-370 9-268 (269)
20 PRK05809 3-hydroxybutyryl-CoA 100.0 1.8E-52 3.9E-57 400.0 27.9 255 40-370 3-259 (260)
21 PRK08252 enoyl-CoA hydratase; 100.0 2E-52 4.3E-57 398.3 27.9 252 39-370 1-253 (254)
22 KOG1680 Enoyl-CoA hydratase [L 100.0 2.1E-53 4.5E-58 392.3 20.4 251 42-370 38-289 (290)
23 TIGR02280 PaaB1 phenylacetate 100.0 1.6E-52 3.5E-57 399.4 27.2 254 43-370 1-255 (256)
24 PLN02664 enoyl-CoA hydratase/d 100.0 2.3E-52 4.9E-57 402.2 27.8 256 43-370 10-274 (275)
25 PRK06563 enoyl-CoA hydratase; 100.0 1.7E-52 3.7E-57 399.0 26.3 252 43-370 1-254 (255)
26 PRK08139 enoyl-CoA hydratase; 100.0 2.9E-52 6.2E-57 399.6 28.0 255 40-370 10-265 (266)
27 PLN02600 enoyl-CoA hydratase 100.0 2E-52 4.4E-57 397.4 26.6 247 48-370 2-250 (251)
28 PRK08138 enoyl-CoA hydratase; 100.0 3.5E-52 7.5E-57 398.1 28.2 252 41-370 7-260 (261)
29 PRK05981 enoyl-CoA hydratase; 100.0 2.8E-52 6.2E-57 399.9 27.4 260 39-370 2-265 (266)
30 PRK05995 enoyl-CoA hydratase; 100.0 2.9E-52 6.4E-57 398.9 27.4 258 40-371 3-262 (262)
31 PRK07511 enoyl-CoA hydratase; 100.0 5E-52 1.1E-56 396.9 28.1 257 40-369 2-259 (260)
32 PRK06494 enoyl-CoA hydratase; 100.0 8.3E-52 1.8E-56 395.1 27.7 253 39-370 2-258 (259)
33 PRK09120 p-hydroxycinnamoyl Co 100.0 8.8E-52 1.9E-56 397.9 27.6 254 38-362 5-262 (275)
34 PRK07659 enoyl-CoA hydratase; 100.0 1E-51 2.2E-56 394.7 26.8 253 41-370 6-259 (260)
35 PRK07327 enoyl-CoA hydratase; 100.0 1.6E-51 3.4E-56 395.0 27.4 253 40-370 10-267 (268)
36 PRK07468 enoyl-CoA hydratase; 100.0 1.7E-51 3.7E-56 393.6 27.5 257 40-370 3-261 (262)
37 PRK06688 enoyl-CoA hydratase; 100.0 1.3E-51 2.9E-56 393.8 26.4 254 40-370 4-258 (259)
38 PRK05674 gamma-carboxygeranoyl 100.0 1.2E-51 2.6E-56 395.1 25.9 257 40-370 4-263 (265)
39 TIGR03210 badI 2-ketocyclohexa 100.0 1.8E-51 3.9E-56 392.0 26.3 252 40-370 1-255 (256)
40 PRK06210 enoyl-CoA hydratase; 100.0 1.7E-51 3.7E-56 395.8 26.2 260 39-370 3-271 (272)
41 PRK06495 enoyl-CoA hydratase; 100.0 2.6E-51 5.7E-56 391.2 27.2 254 39-370 2-256 (257)
42 PRK05864 enoyl-CoA hydratase; 100.0 2.3E-51 4.9E-56 395.4 26.7 263 37-371 5-275 (276)
43 PRK06144 enoyl-CoA hydratase; 100.0 2.6E-51 5.6E-56 392.2 26.9 254 38-370 5-261 (262)
44 TIGR01929 menB naphthoate synt 100.0 2E-51 4.3E-56 392.4 25.9 254 41-370 2-258 (259)
45 PRK03580 carnitinyl-CoA dehydr 100.0 2.9E-51 6.4E-56 391.7 27.1 254 39-370 1-260 (261)
46 PRK07509 enoyl-CoA hydratase; 100.0 3.2E-51 7E-56 391.8 27.3 257 39-370 1-262 (262)
47 PRK07260 enoyl-CoA hydratase; 100.0 3.3E-51 7.3E-56 390.1 26.2 251 41-362 2-253 (255)
48 PRK08260 enoyl-CoA hydratase; 100.0 5.1E-51 1.1E-55 396.7 27.0 259 40-371 3-278 (296)
49 PRK06143 enoyl-CoA hydratase; 100.0 6.2E-51 1.3E-55 388.2 26.5 247 40-362 5-254 (256)
50 PRK08259 enoyl-CoA hydratase; 100.0 6.3E-51 1.4E-55 387.8 24.8 250 39-366 1-251 (254)
51 PRK11423 methylmalonyl-CoA dec 100.0 1.2E-50 2.7E-55 387.2 26.6 253 40-370 3-260 (261)
52 PRK07396 dihydroxynaphthoic ac 100.0 1.5E-50 3.1E-55 389.2 26.7 257 39-371 11-269 (273)
53 PRK06072 enoyl-CoA hydratase; 100.0 3.5E-50 7.7E-55 381.4 27.7 246 43-370 2-247 (248)
54 PRK05870 enoyl-CoA hydratase; 100.0 1.2E-50 2.7E-55 384.8 24.3 245 39-359 1-247 (249)
55 PRK07827 enoyl-CoA hydratase; 100.0 4.7E-50 1E-54 383.3 27.6 255 40-369 5-259 (260)
56 TIGR03189 dienoyl_CoA_hyt cycl 100.0 4E-50 8.8E-55 381.5 26.3 246 43-370 3-250 (251)
57 COG1024 CaiD Enoyl-CoA hydrata 100.0 4.6E-50 1E-54 382.7 26.6 253 39-368 3-257 (257)
58 PRK06023 enoyl-CoA hydratase; 100.0 2.9E-50 6.3E-55 382.7 25.0 245 41-362 3-251 (251)
59 PLN02888 enoyl-CoA hydratase 100.0 6.8E-50 1.5E-54 382.8 27.5 253 40-369 8-262 (265)
60 PRK07854 enoyl-CoA hydratase; 100.0 6.2E-50 1.3E-54 378.5 25.0 240 43-370 2-242 (243)
61 PLN02921 naphthoate synthase 100.0 2.1E-49 4.5E-54 388.5 27.2 256 39-370 63-322 (327)
62 PF00378 ECH: Enoyl-CoA hydrat 100.0 5.7E-50 1.2E-54 379.5 22.0 244 44-362 1-245 (245)
63 PRK12478 enoyl-CoA hydratase; 100.0 6.5E-50 1.4E-54 388.7 22.9 257 40-372 4-282 (298)
64 PRK07938 enoyl-CoA hydratase; 100.0 2.3E-49 5.1E-54 375.9 25.5 242 46-366 7-249 (249)
65 PLN03214 probable enoyl-CoA hy 100.0 4.3E-49 9.3E-54 379.5 25.0 249 40-362 10-263 (278)
66 PRK07112 polyketide biosynthes 100.0 7.8E-49 1.7E-53 373.7 26.4 251 40-370 3-254 (255)
67 PRK08321 naphthoate synthase; 100.0 9.6E-49 2.1E-53 381.3 25.9 259 40-371 22-298 (302)
68 PRK07110 polyketide biosynthes 100.0 2.5E-48 5.5E-53 368.9 26.4 244 39-359 3-247 (249)
69 PRK06190 enoyl-CoA hydratase; 100.0 8.9E-48 1.9E-52 366.6 26.0 247 40-359 3-250 (258)
70 TIGR03222 benzo_boxC benzoyl-C 100.0 8.9E-47 1.9E-51 389.6 25.5 254 43-372 260-545 (546)
71 PRK08184 benzoyl-CoA-dihydrodi 100.0 1.7E-46 3.7E-51 388.7 24.9 258 39-372 258-549 (550)
72 PRK05869 enoyl-CoA hydratase; 100.0 4.3E-46 9.3E-51 347.5 22.7 214 39-324 1-220 (222)
73 PRK08788 enoyl-CoA hydratase; 100.0 5.9E-45 1.3E-49 350.9 27.1 262 27-359 2-274 (287)
74 KOG1679 Enoyl-CoA hydratase [L 100.0 7E-46 1.5E-50 328.8 16.3 259 40-370 26-290 (291)
75 PRK08290 enoyl-CoA hydratase; 100.0 7.6E-45 1.6E-49 351.7 24.0 235 40-343 3-257 (288)
76 PRK06213 enoyl-CoA hydratase; 100.0 2.2E-44 4.8E-49 337.9 22.1 225 39-338 1-227 (229)
77 PRK11730 fadB multifunctional 100.0 3.5E-44 7.6E-49 384.9 26.1 287 42-362 7-296 (715)
78 PRK08272 enoyl-CoA hydratase; 100.0 8.2E-44 1.8E-48 347.1 23.9 217 39-325 8-246 (302)
79 TIGR03200 dearomat_oah 6-oxocy 100.0 6.1E-43 1.3E-47 340.5 26.9 284 51-362 38-328 (360)
80 PRK11154 fadJ multifunctional 100.0 1.3E-42 2.9E-47 372.7 26.0 283 40-362 4-294 (708)
81 KOG1681 Enoyl-CoA isomerase [L 100.0 5.5E-43 1.2E-47 313.1 15.3 260 39-369 17-290 (292)
82 TIGR02440 FadJ fatty oxidation 100.0 1.5E-41 3.2E-46 363.9 27.6 277 46-362 6-289 (699)
83 KOG0016 Enoyl-CoA hydratase/is 100.0 1.8E-41 4E-46 310.2 20.7 253 39-362 5-262 (266)
84 TIGR02437 FadB fatty oxidation 100.0 4.1E-41 8.9E-46 360.6 26.4 287 42-362 7-297 (714)
85 PLN02267 enoyl-CoA hydratase/i 100.0 1E-40 2.2E-45 314.7 22.2 183 43-228 2-189 (239)
86 TIGR02441 fa_ox_alpha_mit fatt 100.0 2.7E-40 5.8E-45 355.1 25.5 290 41-362 13-321 (737)
87 COG0447 MenB Dihydroxynaphthoi 100.0 1.6E-41 3.4E-46 301.6 12.3 256 39-369 16-276 (282)
88 KOG1682 Enoyl-CoA isomerase [L 100.0 2.1E-39 4.6E-44 285.4 19.9 253 43-371 34-287 (287)
89 cd06558 crotonase-like Crotona 100.0 2.7E-38 5.9E-43 288.9 19.8 190 43-234 1-191 (195)
90 TIGR03222 benzo_boxC benzoyl-C 100.0 1.2E-37 2.6E-42 321.9 22.2 195 39-234 9-222 (546)
91 PRK08184 benzoyl-CoA-dihydrodi 100.0 8.8E-37 1.9E-41 316.4 22.3 197 37-234 11-226 (550)
92 PF13766 ECH_C: 2-enoyl-CoA Hy 99.8 5.8E-21 1.3E-25 160.3 8.8 115 265-386 4-118 (118)
93 cd07014 S49_SppA Signal peptid 99.8 4.5E-19 9.7E-24 159.9 9.8 142 67-228 21-173 (177)
94 cd07020 Clp_protease_NfeD_1 No 99.8 1.3E-18 2.7E-23 158.4 11.9 145 52-225 2-166 (187)
95 cd07019 S49_SppA_1 Signal pept 99.6 2E-15 4.3E-20 140.0 9.3 144 64-227 17-206 (211)
96 cd00394 Clp_protease_like Case 99.5 6E-14 1.3E-18 124.4 10.7 134 65-221 8-161 (161)
97 cd07022 S49_Sppa_36K_type Sign 99.5 2.7E-13 5.9E-18 125.9 12.9 96 57-173 13-109 (214)
98 cd07023 S49_Sppa_N_C Signal pe 99.4 5E-13 1.1E-17 123.6 10.5 151 51-226 2-202 (208)
99 TIGR00705 SppA_67K signal pept 99.4 7.4E-13 1.6E-17 139.7 11.6 157 47-223 306-510 (584)
100 cd07016 S14_ClpP_1 Caseinolyti 99.4 6.5E-13 1.4E-17 117.8 9.2 128 68-221 15-160 (160)
101 TIGR00706 SppA_dom signal pept 99.3 9E-12 2E-16 115.2 11.6 149 51-228 2-199 (207)
102 cd07021 Clp_protease_NfeD_like 99.3 3.5E-11 7.5E-16 108.4 11.5 140 52-224 2-171 (178)
103 cd07018 S49_SppA_67K_type Sign 99.2 1E-10 2.3E-15 109.2 10.0 142 65-227 26-216 (222)
104 cd07015 Clp_protease_NfeD Nodu 98.8 5.7E-08 1.2E-12 86.8 11.5 136 65-224 10-165 (172)
105 PRK00277 clpP ATP-dependent Cl 98.7 1.4E-07 3.1E-12 86.7 11.2 135 64-224 39-196 (200)
106 cd07013 S14_ClpP Caseinolytic 98.7 2.5E-07 5.4E-12 82.2 12.1 132 65-221 9-162 (162)
107 KOG1683 Hydroxyacyl-CoA dehydr 98.6 1.7E-08 3.6E-13 98.3 2.3 169 50-224 66-240 (380)
108 PRK10949 protease 4; Provision 98.6 6.3E-07 1.4E-11 95.2 13.8 159 48-229 325-534 (618)
109 PRK12553 ATP-dependent Clp pro 98.5 9.9E-07 2.2E-11 81.5 11.8 137 64-225 43-203 (207)
110 cd07017 S14_ClpP_2 Caseinolyti 98.5 7.1E-07 1.5E-11 80.0 9.4 132 65-221 18-171 (171)
111 PF00574 CLP_protease: Clp pro 98.4 1.4E-06 2.9E-11 78.9 8.6 143 54-224 19-181 (182)
112 PRK14512 ATP-dependent Clp pro 98.4 4.8E-06 1E-10 76.3 11.8 134 65-224 32-188 (197)
113 CHL00028 clpP ATP-dependent Cl 98.3 6.5E-06 1.4E-10 75.5 12.0 137 65-225 39-197 (200)
114 PRK12319 acetyl-CoA carboxylas 98.3 2.4E-05 5.3E-10 74.3 15.0 138 62-225 76-215 (256)
115 TIGR00493 clpP ATP-dependent C 98.3 1.3E-05 2.9E-10 73.1 12.6 136 65-223 35-190 (191)
116 CHL00198 accA acetyl-CoA carbo 98.3 3.6E-05 7.9E-10 74.9 15.9 140 62-225 132-271 (322)
117 PLN03230 acetyl-coenzyme A car 98.2 0.0002 4.3E-09 71.7 19.8 137 63-225 200-338 (431)
118 PLN03229 acetyl-coenzyme A car 98.2 4E-05 8.7E-10 81.1 15.6 139 62-224 220-358 (762)
119 TIGR00513 accA acetyl-CoA carb 98.1 8.8E-05 1.9E-09 72.2 15.8 137 63-225 130-268 (316)
120 PRK05724 acetyl-CoA carboxylas 98.1 8.5E-05 1.8E-09 72.5 14.7 140 62-225 129-268 (319)
121 PRK14514 ATP-dependent Clp pro 98.1 6.7E-05 1.4E-09 69.7 13.1 138 64-224 62-219 (221)
122 PRK11778 putative inner membra 98.1 4.6E-05 9.9E-10 74.8 12.0 156 48-227 89-289 (330)
123 TIGR03133 malonate_beta malona 98.0 0.00019 4.2E-09 68.7 15.9 150 51-226 61-219 (274)
124 COG0616 SppA Periplasmic serin 98.0 2.6E-05 5.6E-10 76.8 10.2 134 70-227 82-265 (317)
125 PRK14513 ATP-dependent Clp pro 98.0 6.4E-05 1.4E-09 68.9 11.5 139 64-227 35-195 (201)
126 PRK12551 ATP-dependent Clp pro 98.0 9.3E-05 2E-09 67.7 12.0 140 64-226 33-192 (196)
127 TIGR03134 malonate_gamma malon 97.9 0.0012 2.5E-08 62.3 17.8 157 47-227 29-192 (238)
128 PRK07189 malonate decarboxylas 97.8 0.00037 8E-09 67.6 12.8 150 51-226 70-228 (301)
129 PF01972 SDH_sah: Serine dehyd 97.7 0.00052 1.1E-08 65.0 11.8 96 63-184 70-165 (285)
130 PRK05654 acetyl-CoA carboxylas 97.7 0.0012 2.7E-08 63.9 14.6 152 47-229 118-271 (292)
131 TIGR00515 accD acetyl-CoA carb 97.7 0.0013 2.9E-08 63.5 14.7 152 47-229 117-270 (285)
132 CHL00174 accD acetyl-CoA carbo 97.6 0.0021 4.6E-08 62.1 15.6 150 51-231 135-286 (296)
133 COG0740 ClpP Protease subunit 97.5 0.00067 1.4E-08 61.7 10.0 144 54-227 30-195 (200)
134 TIGR00705 SppA_67K signal pept 97.4 0.0012 2.5E-08 70.4 11.7 85 68-172 76-160 (584)
135 PF01343 Peptidase_S49: Peptid 97.4 0.00012 2.6E-09 64.5 2.9 95 134-228 3-144 (154)
136 PRK12552 ATP-dependent Clp pro 97.3 0.0045 9.7E-08 57.6 12.5 143 65-225 49-215 (222)
137 PF01039 Carboxyl_trans: Carbo 97.1 0.0098 2.1E-07 62.2 14.8 139 51-226 59-207 (493)
138 COG1030 NfeD Membrane-bound se 97.0 0.013 2.7E-07 59.3 13.6 148 48-224 25-188 (436)
139 TIGR01117 mmdA methylmalonyl-C 96.9 0.034 7.4E-07 58.3 15.9 154 54-229 319-486 (512)
140 PRK10949 protease 4; Provision 96.7 0.012 2.7E-07 62.9 11.5 86 68-173 95-180 (618)
141 TIGR01117 mmdA methylmalonyl-C 96.6 0.029 6.3E-07 58.8 13.0 139 51-226 84-230 (512)
142 COG0777 AccD Acetyl-CoA carbox 96.4 0.053 1.2E-06 51.4 12.2 142 51-229 124-272 (294)
143 COG0825 AccA Acetyl-CoA carbox 96.4 0.0037 8.1E-08 59.5 4.3 90 126-224 177-266 (317)
144 PLN02820 3-methylcrotonyl-CoA 96.4 0.072 1.6E-06 56.5 14.2 147 47-226 126-281 (569)
145 KOG0840 ATP-dependent Clp prot 95.8 0.051 1.1E-06 51.0 8.8 132 65-224 101-257 (275)
146 PF01039 Carboxyl_trans: Carbo 94.4 0.27 5.9E-06 51.5 10.2 160 48-229 292-469 (493)
147 PLN02820 3-methylcrotonyl-CoA 92.9 2.8 6E-05 44.7 14.6 142 64-227 381-543 (569)
148 PLN02157 3-hydroxyisobutyryl-C 92.7 0.15 3.3E-06 51.8 4.8 64 300-369 228-294 (401)
149 COG4799 Acetyl-CoA carboxylase 92.6 0.56 1.2E-05 48.9 8.8 96 57-168 99-194 (526)
150 KOG0540 3-Methylcrotonyl-CoA c 86.4 15 0.00033 37.5 12.9 148 54-228 353-511 (536)
151 COG4799 Acetyl-CoA carboxylase 74.9 27 0.00059 36.7 10.5 119 54-190 328-447 (526)
152 PF06833 MdcE: Malonate decarb 63.9 55 0.0012 30.8 9.1 142 62-226 40-189 (234)
153 COG0074 SucD Succinyl-CoA synt 60.3 21 0.00046 34.4 5.8 75 46-149 143-240 (293)
154 smart00250 PLEC Plectin repeat 56.0 9.1 0.0002 25.0 1.9 18 203-220 18-35 (38)
155 TIGR00377 ant_ant_sig anti-ant 51.1 52 0.0011 26.0 6.1 50 41-95 3-52 (108)
156 TIGR00237 xseA exodeoxyribonuc 48.7 28 0.0006 35.9 5.0 80 66-167 168-247 (432)
157 PTZ00187 succinyl-CoA syntheta 48.2 45 0.00096 32.9 6.1 15 135-149 250-264 (317)
158 PF00681 Plectin: Plectin repe 45.6 7.9 0.00017 26.4 0.3 19 202-220 17-35 (45)
159 PF13607 Succ_CoA_lig: Succiny 44.4 56 0.0012 28.0 5.5 52 72-148 41-92 (138)
160 PF02601 Exonuc_VII_L: Exonucl 39.9 56 0.0012 31.9 5.5 80 66-167 53-135 (319)
161 PLN02522 ATP citrate (pro-S)-l 37.5 81 0.0018 34.0 6.4 14 136-149 249-262 (608)
162 PF00549 Ligase_CoA: CoA-ligas 37.4 63 0.0014 28.3 4.8 61 73-150 61-121 (153)
163 PF01740 STAS: STAS domain; I 37.1 1.2E+02 0.0026 24.3 6.3 48 43-95 2-57 (117)
164 COG1570 XseA Exonuclease VII, 36.5 61 0.0013 33.4 5.1 57 68-144 176-232 (440)
165 COG3592 Uncharacterized conser 36.0 22 0.00047 26.7 1.3 41 347-391 27-67 (74)
166 TIGR02886 spore_II_AA anti-sig 34.9 1.7E+02 0.0036 23.1 6.7 50 44-98 2-51 (106)
167 PLN00125 Succinyl-CoA ligase [ 30.5 1.4E+02 0.0031 29.2 6.4 13 137-149 233-245 (300)
168 PF06258 Mito_fiss_Elm1: Mitoc 28.8 5.6E+02 0.012 25.1 10.4 110 61-175 121-245 (311)
169 PF14842 FliG_N: FliG N-termin 28.3 81 0.0017 25.7 3.7 85 197-288 12-100 (108)
170 KOG1255 Succinyl-CoA synthetas 28.2 1.4E+02 0.0029 28.4 5.5 56 73-149 219-274 (329)
171 PRK00286 xseA exodeoxyribonucl 27.2 75 0.0016 32.6 4.1 38 128-167 215-252 (438)
172 PRK00964 tetrahydromethanopter 26.5 1.1E+02 0.0025 28.4 4.7 68 42-109 18-96 (225)
173 COG0412 Dienelactone hydrolase 24.9 4.5E+02 0.0097 24.5 8.6 42 121-162 91-134 (236)
174 PF00195 Chal_sti_synt_N: Chal 23.7 47 0.001 31.1 1.7 72 75-169 110-183 (226)
175 PRK06091 membrane protein FdrA 23.5 1.9E+02 0.0041 30.9 6.2 22 128-149 270-291 (555)
176 PRK13505 formate--tetrahydrofo 21.0 1.4E+02 0.003 31.8 4.6 75 84-162 323-397 (557)
No 1
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.6e-72 Score=562.13 Aligned_cols=406 Identities=78% Similarity=1.271 Sum_probs=360.6
Q ss_pred ChhhhHHHhhhhcceeecc-cCCcccccccCCCCCCCccCCCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHH
Q 015492 1 MQRIKSLLRIKHSFKQVAF-VSHQQRSFSALPDYSSNDYLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYES 79 (406)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~ 79 (406)
|||.|.+-|.--+-.-|-| -.-++|.|+++|+........+.|.++..+++++||||||+++|+||.+|+.+|.++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~e~~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~ 80 (407)
T PLN02851 1 MQRVKALRRVAVPLQWVRFGSVSYGRSFSALPNYAANDDLQDQVLVEGRAKSRAAILNRPSSLNALTIPMVARLKRLYES 80 (407)
T ss_pred ChhHHHHHHHhhhccceeeeeecCCcccccCCcccccCCCCCCeEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHH
Confidence 7999998887666554443 234688899999998877788899999999999999999999999999999999999999
Q ss_pred HHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccC
Q 015492 80 WEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQG 159 (406)
Q Consensus 80 ~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~c 159 (406)
++.|+++++|||+|.|++||+|+|++.+.......+......++...+.+.+.+.++|||+||+|||+|+|||++|+++|
T Consensus 81 ~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~ 160 (407)
T PLN02851 81 WEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPG 160 (407)
T ss_pred HHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhC
Confidence 99999999999999999999999999986532222223455677888889999999999999999999999999999999
Q ss_pred CeEEEeCCeeEecccccccccCCCchHHHHhhcchHHHHHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhcc
Q 015492 160 MYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLIT 239 (406)
Q Consensus 160 D~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~ 239 (406)
|+||++++++|++||+++|++|++|++++|+|++|..+.+|++||++++|+||+++||+|++||++++..+.+.+.++..
T Consensus 161 D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~~g~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l~~l~~~l~~~~~ 240 (407)
T PLN02851 161 MFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGYLGEYLALTGQKLNGVEMIACGLATHYCLNARLPLIEERLGKLLT 240 (407)
T ss_pred CEEEEeCCceEecchhccCCCCCccHHHHHHHhcCHHHHHHHHhCCcCCHHHHHHCCCceeecCHhhHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999889999999999999999999999999999999877788877777
Q ss_pred CCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcCCHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHH
Q 015492 240 DDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHDTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQS 319 (406)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~ 319 (406)
.++..+.++++.|.....++...+......|++||+.+++++|+++|++..+...++|++++++.|.+.||.|+++|.++
T Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~~sv~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~ 320 (407)
T PLN02851 241 DDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGHDTVEEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQS 320 (407)
T ss_pred CCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCCCCHHHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 78888999999997543333345556689999999999999999999975443356899999999999999999999999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhheeeCCCCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCc
Q 015492 320 IREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRARLVDKDFAPKWDPPSLADVSKDMVDCYFSPFDELEPELQLPT 399 (406)
Q Consensus 320 l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~afl~ek~r~P~w~~~~~~~v~~~~v~~~~~~~~~~~~~~~~~~ 399 (406)
++++...++.++++.|+.+..+++....++||.||++|.||||+++|+|+++++++|+++.|+.+|.|++..+|||++|+
T Consensus 321 ~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVRA~LIDKd~~P~W~p~sl~~V~~~~v~~~f~~~~~~~~~l~~~~ 400 (407)
T PLN02851 321 IREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVRARLVDKDFAPKWDPPSLGEVSKDMVDCYFTPLDESESELELPT 400 (407)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHHHHHhcCCCCCCCCCCCChhhCCHHHHHHHhCCCCCCcccccCCc
Confidence 99999999999999999999887621137999999999999999999999999999999999999999977778999999
Q ss_pred cccCCCC
Q 015492 400 ALREPYI 406 (406)
Q Consensus 400 ~~~~~~~ 406 (406)
+.++||.
T Consensus 401 ~~~~~~~ 407 (407)
T PLN02851 401 AQREPYM 407 (407)
T ss_pred ccccccC
Confidence 9999984
No 2
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=5.3e-68 Score=529.97 Aligned_cols=365 Identities=59% Similarity=1.076 Sum_probs=320.1
Q ss_pred CCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhH
Q 015492 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119 (406)
Q Consensus 40 ~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (406)
.+.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++......+.....
T Consensus 36 ~~~V~~e~~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~ 115 (401)
T PLN02157 36 DYQVLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAI 115 (401)
T ss_pred CCceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999988643211112223
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHHHHH
Q 015492 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEY 199 (406)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~~ 199 (406)
..++...+.+.+.|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+++
T Consensus 116 ~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~~a~~ 195 (401)
T PLN02157 116 REFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGRLGEY 195 (401)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhHHHHH
Confidence 45566666778889999999999999999999999999999999999999999999999999999999999999966999
Q ss_pred HhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcCCH
Q 015492 200 LALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHDTI 279 (406)
Q Consensus 200 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 279 (406)
|++||+.++|+||+++||||++||++++....+.+.++...+|..++.+++.+.....+....+.....+|+.||+.+++
T Consensus 196 L~LTG~~i~A~eA~~~GLv~~vVp~~~l~~~~~~~~~i~~~~p~av~~~k~~~~~~~~~~~~~l~~~~~~i~~~f~~~d~ 275 (401)
T PLN02157 196 LGLTGLKLSGAEMLACGLATHYIRSEEIPVMEEQLKKLLTDDPSVVESCLEKCAEVAHPEKTGVIRRIDLLEKCFSHDTV 275 (401)
T ss_pred HHHcCCcCCHHHHHHcCCceEEeCHhHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHhcCCCH
Confidence 99999999999999999999999999987666666777778888888888877544322334445557899999999999
Q ss_pred HHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhhee
Q 015492 280 EEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRARL 359 (406)
Q Consensus 280 ~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~afl 359 (406)
+|++++|+........+|++++++.|.+.||.|+++|.++++++...++.++++.|+.+..+++....++||.||++|.|
T Consensus 276 ~ei~~al~~~~~kr~~~wa~~~~~~l~~~sP~Sl~vt~~~~~~~~~~~l~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~L 355 (401)
T PLN02157 276 EEIIDSLEIEAGRRKDTWCITTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIREYRMSLQGLIGPMSGNFCEGVRARL 355 (401)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 99999997643333568999999999999999999999999999989999999999999988773112589999999999
Q ss_pred eCCCCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCccccCC
Q 015492 360 VDKDFAPKWDPPSLADVSKDMVDCYFSPFDELEPELQLPTALREP 404 (406)
Q Consensus 360 ~ek~r~P~w~~~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 404 (406)
|||+++|+|+++++++|+++.|+.+|.|+.++..+|++|+.|||.
T Consensus 356 iDKd~~P~W~p~~l~~V~~~~v~~~f~~~~~~~~~l~~~~~~~~~ 400 (401)
T PLN02157 356 IDKDEAPKWDPPSLEKVSEDMVDDYFCALTPTEPDLDLPVKLRES 400 (401)
T ss_pred cCCCCCCCCCCCChhhCCHHHHHHHhCCCCCCccccccchhhhhc
Confidence 999999999999999999999999999997445689999999985
No 3
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=6.6e-68 Score=527.66 Aligned_cols=365 Identities=46% Similarity=0.831 Sum_probs=320.6
Q ss_pred cEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHH
Q 015492 42 QVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKN 121 (406)
Q Consensus 42 ~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~ 121 (406)
.|.++.+++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|.|++||+|+|++++......+.......
T Consensus 10 ~v~~~~~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~ 89 (381)
T PLN02988 10 QVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGAN 89 (381)
T ss_pred ceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHH
Confidence 58888999999999999999999999999999999999999999999999999999999999998753221111122234
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHHHHHHh
Q 015492 122 FFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLA 201 (406)
Q Consensus 122 ~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~~l~ 201 (406)
++...+.+.+.+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+++|+
T Consensus 90 ~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~~~~~l~ 169 (381)
T PLN02988 90 FFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVG 169 (381)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHHHHHHHH
Confidence 45555566778899999999999999999999999999999999999999999999999999999999999997799999
Q ss_pred hcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcCCHHH
Q 015492 202 LTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHDTIEE 281 (406)
Q Consensus 202 ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~ 281 (406)
|||++++|+||+++||||++||++++.....+++++...+|..++.+++.+.......+.........|++||+.+++++
T Consensus 170 LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~~~~~ 249 (381)
T PLN02988 170 LTGARLDGAEMLACGLATHFVPSTRLTALEADLCRIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCFSRRTVEE 249 (381)
T ss_pred HcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHHHhhccCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999999999999988888887777788888888888865432222344456899999999999999
Q ss_pred HHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhheeeC
Q 015492 282 IIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRARLVD 361 (406)
Q Consensus 282 i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~afl~e 361 (406)
|+++|++..++..++|++++++.|.+.||.|+++|.+.++++...++.++++.|+.+..+++....++||.||++|.|||
T Consensus 250 i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~LiD 329 (381)
T PLN02988 250 IISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEGCRAILVD 329 (381)
T ss_pred HHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHhcC
Confidence 99999975432356899999999999999999999999999999999999999999999987411158999999999999
Q ss_pred CCCCCCCCCCCcCCCCHHHHhcccCCCCCCC--CCCCCCc--cccCCCC
Q 015492 362 KDFAPKWDPPSLADVSKDMVDCYFSPFDELE--PELQLPT--ALREPYI 406 (406)
Q Consensus 362 k~r~P~w~~~~~~~v~~~~v~~~~~~~~~~~--~~~~~~~--~~~~~~~ 406 (406)
|++.|+|+++++++|+++.|+++|+|++..+ -||+||+ +.|+||+
T Consensus 330 Kd~~P~W~p~~l~~v~~~~v~~~f~~~~~~~~~~~l~~~~~~~~~~~~~ 378 (381)
T PLN02988 330 KDKNPKWEPRRLEDMKDSMVEQYFERVEEEEEWDDLKLPPRNNLPALAI 378 (381)
T ss_pred CCCCCCCCCCChhhCCHHHHHHHhCCCCccccccccCCcccccccchhh
Confidence 9999999999999999999999999986643 3799999 8888874
No 4
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=2.6e-66 Score=518.06 Aligned_cols=362 Identities=44% Similarity=0.765 Sum_probs=317.1
Q ss_pred CCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhH
Q 015492 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119 (406)
Q Consensus 40 ~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (406)
++.+.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++...... ....
T Consensus 10 ~~~v~~~~~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~--~~~~ 87 (379)
T PLN02874 10 EEVVLGEEKGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRES--DDSC 87 (379)
T ss_pred CCceEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhccc--chHH
Confidence 44688899999999999999999999999999999999999999999999999999999999999987542111 1122
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHHHHH
Q 015492 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEY 199 (406)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~~ 199 (406)
..++...+.++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+++
T Consensus 88 ~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~~a~~ 167 (379)
T PLN02874 88 LEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGHLGEY 167 (379)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHHHHHH
Confidence 23344455667788999999999999999999999999999999999999999999999999999999999999866999
Q ss_pred HhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcCCH
Q 015492 200 LALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHDTI 279 (406)
Q Consensus 200 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 279 (406)
|++||++++|+||+++|||++|||++++.+...++.++...+...++++++.|.................|.+||+.+++
T Consensus 168 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 247 (379)
T PLN02874 168 LALTGARLNGKEMVACGLATHFVPSEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKDTV 247 (379)
T ss_pred HHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCCCH
Confidence 99999999999999999999999999888766677777777888899999988765444445556668999999999999
Q ss_pred HHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhhee
Q 015492 280 EEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRARL 359 (406)
Q Consensus 280 ~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~afl 359 (406)
.++++++++..++..++||++++++|+++||.|++.+|++++.+...+++++++.|+......+....++|++||++||+
T Consensus 248 ~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~Afl 327 (379)
T PLN02874 248 EEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRALV 327 (379)
T ss_pred HHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccceEE
Confidence 99999999877666789999999999999999999999999998888999999999888776653223799999999998
Q ss_pred eCCCCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCccccCC
Q 015492 360 VDKDFAPKWDPPSLADVSKDMVDCYFSPFDELEPELQLPTALREP 404 (406)
Q Consensus 360 ~ek~r~P~w~~~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 404 (406)
+||+|+|+|+++++++|++++|+++|.|++ .+||||+|++-..|
T Consensus 328 idK~r~P~w~~~~~~~v~~~~v~~~f~~~~-~~~~~~~~~~~~~~ 371 (379)
T PLN02874 328 IDKDNAPKWNPSTLDEVTDEKVDLVFQPFK-AREELQLPEEEENR 371 (379)
T ss_pred EcCCCCCCCCCCChhhCCHHHHHHHhCCCC-CccccCCCccccch
Confidence 898899999999999999999999999863 56889999865444
No 5
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=1.1e-64 Score=479.90 Aligned_cols=379 Identities=47% Similarity=0.834 Sum_probs=346.4
Q ss_pred CcccccccCCCCCCCccCCCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCC-CCccc
Q 015492 22 HQQRSFSALPDYSSNDYLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCS 100 (406)
Q Consensus 22 ~~~r~~~~~~~~~~~~~~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G-~~F~~ 100 (406)
...|.+...+.. ......+.|+++..+....||||||+.+||||.+|+..+.-.|..++.++.+++||+.|.| ++||+
T Consensus 20 ~~~r~f~~~~~~-~~~~~~~~VL~e~~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCA 98 (401)
T KOG1684|consen 20 TTSRAFIRMASS-VSTDSKDQVLVEGKGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCA 98 (401)
T ss_pred hhccceeecccc-cccccCCceEEecCCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeec
Confidence 445555444422 2233556899999999999999999999999999999999999999999999999999995 99999
Q ss_pred CCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEeccccccccc
Q 015492 101 GGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFH 180 (406)
Q Consensus 101 G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~ 180 (406)
|+|++.......++.......+|+..+.+.+.+.++.||.||.+||..+|||++|+...-||||+|++.|.+||+.+|++
T Consensus 99 GgDI~~~ae~~~d~~~~~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlf 178 (401)
T KOG1684|consen 99 GGDIKAVAESIKDKETPEVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLF 178 (401)
T ss_pred CccHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccc
Confidence 99999877766666677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHhhcchHHHHHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCH-HHHHHHHHHhcccccCC
Q 015492 181 PDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDP-SIIETSLAQYGDLVSLD 259 (406)
Q Consensus 181 P~~g~~~~l~r~~g~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~ 259 (406)
|+.|++++++|+.|..+.|+.|||+++++.||+..||.++.|+.+++..+.++|.+.+..+| +.+.+.+.+|.....++
T Consensus 179 PDVG~Sy~lsrlpg~lg~YLgLTG~rl~GaD~~~~GlATHyv~S~~l~~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~~~ 258 (401)
T KOG1684|consen 179 PDVGASYFLSRLPGYLGLYLGLTGQRLSGADALRCGLATHYVPSEKLPSLEERLLKNLNDDPQSVINETLEKYASPAKDE 258 (401)
T ss_pred cCccceeehhhCccHHHHhhhhccceecchHHHHhcchhhccchhhhhHHHHHHhhhcCCCcHHHHHHHHHHhcccCCCc
Confidence 99999999999999779999999999999999999999999999999999999985555555 89999999999988777
Q ss_pred hhHHHHHHHHHHHhcCcCCHHHHHHHHHhh-hcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 015492 260 RESVLRKIETIDKCFSHDTIEEIIDALENE-AASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRI 338 (406)
Q Consensus 260 ~~~~~~~~~~i~~~f~~~~~~~i~~~l~~~-~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~ 338 (406)
.........+|++||+.++++|||++|++- .++...+||++.+++|.+.||.|+++|.+.|+++..+++++++..|+++
T Consensus 259 ~~~~~~~~~~i~~~Fs~~tVeeIie~lk~~q~~~~~~ewak~tlk~L~k~SPtSLkvT~r~i~egs~~tl~~~l~~Eyr~ 338 (401)
T KOG1684|consen 259 SFSLSLKLDVINKCFSANTVEEIIEALKNYQQSADGSEWAKETLKTLKKMSPTSLKVTLRQIREGSKQTLDQCLTMEYRL 338 (401)
T ss_pred cccchhhHHHHHHhhccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCchHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 777778899999999999999999999653 3567789999999999999999999999999999999999999999999
Q ss_pred HHHhcccCCCCcHHhhhhheeeCCCCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCccccCCC
Q 015492 339 TLNGISKKVSNDFCEGIRARLVDKDFAPKWDPPSLADVSKDMVDCYFSPFDELEPELQLPTALREPY 405 (406)
Q Consensus 339 ~~~~~~~~~s~d~~egi~afl~ek~r~P~w~~~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 405 (406)
..+... +.||.||++|.|++|++.|+|++.+..+|++++|+.+|.|++. ..||.||...|++|
T Consensus 339 s~~~~~---~~DF~EGvRA~LIDKd~~PKW~p~~l~~V~e~~Vdn~F~~~p~-~~eLklp~~~r~~~ 401 (401)
T KOG1684|consen 339 SLRMLM---RGDFCEGVRAVLIDKDQNPKWDPASLADVTEDEVDNYFKPLPS-KSELKLPVWNRKTY 401 (401)
T ss_pred HHHHhh---ccchhhhhhheeecCCcCCCCCCcchhhcCHHHHHHhccCCCC-cccccCchhcccCC
Confidence 988775 8999999999999999999999999999999999999999443 79999999999998
No 6
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=7.3e-63 Score=487.56 Aligned_cols=338 Identities=39% Similarity=0.709 Sum_probs=296.0
Q ss_pred CcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCC-CCcccCCChHHHHHhhhcCChhhH
Q 015492 41 DQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFEDF 119 (406)
Q Consensus 41 ~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G-~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (406)
+.+.++++++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++............
T Consensus 3 ~~v~~~~~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (342)
T PRK05617 3 DEVLAEVEGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAA 82 (342)
T ss_pred ceEEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhH
Confidence 3588999999999999999999999999999999999999999999999999999 999999999987543211111111
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHHHHH
Q 015492 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEY 199 (406)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~~ 199 (406)
..++.....++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+++
T Consensus 83 ~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g~~a~~ 162 (342)
T PRK05617 83 DRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPGALGTY 162 (342)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhcccHHHHH
Confidence 13444555678889999999999999999999999999999999999999999999999999999999999998844999
Q ss_pred HhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhcc-CCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcCC
Q 015492 200 LALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLIT-DDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHDT 278 (406)
Q Consensus 200 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 278 (406)
|++||+.++|+||+++||||+|+|++++....+++..... .+.+.+++++..|...... ..+......|++||++.+
T Consensus 163 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~ 240 (342)
T PRK05617 163 LALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPAPA--SELAAQRAWIDECFAGDT 240 (342)
T ss_pred HHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCc--chhHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999888765555554433 3455677888887665332 366778899999999999
Q ss_pred HHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhhe
Q 015492 279 IEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRAR 358 (406)
Q Consensus 279 ~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~af 358 (406)
+++|+++|++. .++||.+++++|+++||.+++.+|++++.....+++++++.|...+..++. ++|++||+++|
T Consensus 241 ~~~~~~~l~~~----~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~d~~egv~af 313 (342)
T PRK05617 241 VEDIIAALEAD----GGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLR---SPDFVEGVRAV 313 (342)
T ss_pred HHHHHHHHHhc----cHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh---CCchhhccceE
Confidence 99999999987 348999999999999999999999999998888999999999999988884 99999999999
Q ss_pred eeCCCCCCCCCCCCcCCCCHHHHhcccCC
Q 015492 359 LVDKDFAPKWDPPSLADVSKDMVDCYFSP 387 (406)
Q Consensus 359 l~ek~r~P~w~~~~~~~v~~~~v~~~~~~ 387 (406)
+++|+|.|+|+++++++|++++|+.+|+|
T Consensus 314 l~ek~r~p~~~~~~~~~~~~~~~~~~~~~ 342 (342)
T PRK05617 314 LIDKDRNPKWSPATLEDVTPEDVEAFFAP 342 (342)
T ss_pred EEcCCCCCCCCCCChHhCCHHHHHHhhCC
Confidence 76765899999999999999999999997
No 7
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.4e-54 Score=408.81 Aligned_cols=257 Identities=25% Similarity=0.406 Sum_probs=229.9
Q ss_pred CCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCC-CCcccCCChHHHHHhhhcCChhh
Q 015492 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFED 118 (406)
Q Consensus 40 ~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G-~~F~~G~Dl~~~~~~~~~~~~~~ 118 (406)
.+.|.++.+++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++...........
T Consensus 2 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~ 81 (260)
T PRK05980 2 TDTVLIEIRDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVA 81 (260)
T ss_pred CceEEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhh
Confidence 34688999999999999999999999999999999999999999999999999999 79999999998754211111122
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-H
Q 015492 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (406)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a 197 (406)
...+...+..++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 82 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 161 (260)
T PRK05980 82 LRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRA 161 (260)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHH
Confidence 344555566788889999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcC
Q 015492 198 EYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHD 277 (406)
Q Consensus 198 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 277 (406)
++|+++|+.++|+||+++||||+|||++++.+.+.
T Consensus 162 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------- 196 (260)
T PRK05980 162 LELLLTGDAFSAERALEIGLVNAVVPHEELLPAAR--------------------------------------------- 196 (260)
T ss_pred HHHHHcCCccCHHHHHHcCCCCcccCHHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999999877653222
Q ss_pred CHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhh
Q 015492 278 TIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRA 357 (406)
Q Consensus 278 ~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~a 357 (406)
++++++++.+|.+++.+|++++.....++++++..|...+..++. ++|++||+.+
T Consensus 197 ----------------------~~a~~la~~~p~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~e~~~a 251 (260)
T PRK05980 197 ----------------------ALARRIIRHSPVAVAAILTAVTRGLNLSIAEGLLIESEQFARMAG---SADLREGLAA 251 (260)
T ss_pred ----------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---ChhHHHHHHH
Confidence 458899999999999999999988888899999999999888874 9999999999
Q ss_pred eeeCCCCCCCC
Q 015492 358 RLVDKDFAPKW 368 (406)
Q Consensus 358 fl~ek~r~P~w 368 (406)
|+ +| |+|+|
T Consensus 252 f~-~k-r~p~~ 260 (260)
T PRK05980 252 WI-ER-RRPAY 260 (260)
T ss_pred Hh-cc-CCCCC
Confidence 99 89 89988
No 8
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.8e-53 Score=405.03 Aligned_cols=255 Identities=21% Similarity=0.297 Sum_probs=228.9
Q ss_pred CCCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCC-CCcccCCChHHHHHhhhcCChh
Q 015492 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFE 117 (406)
Q Consensus 39 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G-~~F~~G~Dl~~~~~~~~~~~~~ 117 (406)
||..+.++++++|++||||||++ |++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++... +..
T Consensus 1 ~~~~v~~~~~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~----~~~ 75 (258)
T PRK09076 1 MMIELDLEIDGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADG----DKA 75 (258)
T ss_pred CceEEEEEEECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhc----Chh
Confidence 45578999999999999999976 999999999999999999999999999999999 789999999987531 112
Q ss_pred hHHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-
Q 015492 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (406)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~- 196 (406)
....+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 76 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~ 155 (258)
T PRK09076 76 VAREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGW 155 (258)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHH
Confidence 2233444556778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCc
Q 015492 197 GEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSH 276 (406)
Q Consensus 197 a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 276 (406)
+++|+++|+.++|+||+++||||+|||++++.+.+
T Consensus 156 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a--------------------------------------------- 190 (258)
T PRK09076 156 AKRMILCGERVDAATALRIGLVEEVVEKGEAREAA--------------------------------------------- 190 (258)
T ss_pred HHHHHHcCCcCCHHHHHHCCCCceecCchhHHHHH---------------------------------------------
Confidence 99999999999999999999999999998765322
Q ss_pred CCHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhh
Q 015492 277 DTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIR 356 (406)
Q Consensus 277 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~ 356 (406)
.+++++|+.++|.+++.+|++++.....++++.+..|...+..++. ++|++||++
T Consensus 191 ----------------------~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~eg~~ 245 (258)
T PRK09076 191 ----------------------LALAQKVANQSPSAVAACKTLIQAARNGPRAAALALERELFVDLFD---TEDQREGVN 245 (258)
T ss_pred ----------------------HHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---CchHHHHHH
Confidence 2458999999999999999999988777899999999999888874 999999999
Q ss_pred heeeCCCCCCCCCC
Q 015492 357 ARLVDKDFAPKWDP 370 (406)
Q Consensus 357 afl~ek~r~P~w~~ 370 (406)
+|+ +| |+|+|++
T Consensus 246 af~-~k-r~p~~~~ 257 (258)
T PRK09076 246 AFL-EK-RAPQWKN 257 (258)
T ss_pred HHh-cC-CCCCCCC
Confidence 999 88 8999974
No 9
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.7e-53 Score=402.01 Aligned_cols=252 Identities=24% Similarity=0.265 Sum_probs=225.5
Q ss_pred cEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHH
Q 015492 42 QVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKN 121 (406)
Q Consensus 42 ~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~ 121 (406)
.|.++++++|++||||||+++|+||.+|+.+|.++++.++ +++|+|||||.|++||+|+|++++... +......
T Consensus 3 ~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~----~~~~~~~ 76 (255)
T PRK08150 3 LVSYELDGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRER----DAGEGMH 76 (255)
T ss_pred eEEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhc----cchhHHH
Confidence 5888999999999999999999999999999999999987 789999999999999999999987542 1111223
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-HHHH
Q 015492 122 FFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYL 200 (406)
Q Consensus 122 ~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l 200 (406)
+...++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++|
T Consensus 77 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l 156 (255)
T PRK08150 77 HSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDM 156 (255)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHH
Confidence 344556778889999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred hhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcCCHH
Q 015492 201 ALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHDTIE 280 (406)
Q Consensus 201 ~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 280 (406)
++||+.++|+||+++||||++||++++.+.+.
T Consensus 157 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------------ 188 (255)
T PRK08150 157 MLTGRVYDAQEGERLGLAQYLVPAGEALDKAM------------------------------------------------ 188 (255)
T ss_pred HHcCCcCCHHHHHHcCCccEeeCchHHHHHHH------------------------------------------------
Confidence 99999999999999999999999988753322
Q ss_pred HHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhheee
Q 015492 281 EIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRARLV 360 (406)
Q Consensus 281 ~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~afl~ 360 (406)
+++++|++++|.+++.+|++++.....+++.++..|...+...+ .++|++||+.+|+
T Consensus 189 -------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~---~s~d~~eg~~af~- 245 (255)
T PRK08150 189 -------------------ELARRIAQNAPLTNFAVLNALPRIADMSADDGLFVESLMAAVAQ---SAPEAKERLRAFL- 245 (255)
T ss_pred -------------------HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHh-
Confidence 45899999999999999999998877889999999988777766 4899999999999
Q ss_pred CCCCCCCCCCC
Q 015492 361 DKDFAPKWDPP 371 (406)
Q Consensus 361 ek~r~P~w~~~ 371 (406)
+| |+|+|+++
T Consensus 246 ~k-r~p~~~~~ 255 (255)
T PRK08150 246 EK-KAAKVKPP 255 (255)
T ss_pred cc-CCCCCCCC
Confidence 89 89999763
No 10
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.1e-53 Score=403.04 Aligned_cols=252 Identities=23% Similarity=0.348 Sum_probs=226.6
Q ss_pred CcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHH
Q 015492 41 DQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFK 120 (406)
Q Consensus 41 ~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~ 120 (406)
+.+.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.|++||+|+|++++... .. ..
T Consensus 4 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~---~~---~~ 77 (257)
T PRK05862 4 ETILVETRGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADL---SF---MD 77 (257)
T ss_pred ceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhcc---ch---hH
Confidence 4588899999999999999999999999999999999999999999999999999999999999987531 11 11
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-HHH
Q 015492 121 NFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEY 199 (406)
Q Consensus 121 ~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~ 199 (406)
.+...+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus 78 ~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~ 157 (257)
T PRK05862 78 VYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMD 157 (257)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHHH
Confidence 1223334567788999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcCCH
Q 015492 200 LALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHDTI 279 (406)
Q Consensus 200 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 279 (406)
|+++|+.++|+||+++||||+|+|++++.+.+.
T Consensus 158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------------- 190 (257)
T PRK05862 158 LCLTGRMMDAAEAERAGLVSRVVPADKLLDEAL----------------------------------------------- 190 (257)
T ss_pred HHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHH-----------------------------------------------
Confidence 999999999999999999999999887753222
Q ss_pred HHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhhee
Q 015492 280 EEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRARL 359 (406)
Q Consensus 280 ~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~afl 359 (406)
++++++++.+|.+++.+|++++.....++.+++..|...+..++. ++|++||+++|+
T Consensus 191 --------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~~~~e~i~af~ 247 (257)
T PRK05862 191 --------------------AAATTIASFSLPAVMMAKEAVNRAYETTLAEGLLFERRLFHSLFA---TEDQKEGMAAFV 247 (257)
T ss_pred --------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---ChhHHHHHHHHh
Confidence 458899999999999999999998888999999999998888874 999999999999
Q ss_pred eCCCCCCCCCC
Q 015492 360 VDKDFAPKWDP 370 (406)
Q Consensus 360 ~ek~r~P~w~~ 370 (406)
+| |+|.|++
T Consensus 248 -~k-r~p~~~~ 256 (257)
T PRK05862 248 -EK-RKPVFKH 256 (257)
T ss_pred -cc-CCCCCCC
Confidence 99 8999975
No 11
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.3e-53 Score=406.17 Aligned_cols=258 Identities=22% Similarity=0.299 Sum_probs=229.0
Q ss_pred CcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhc-------
Q 015492 41 DQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNE------- 113 (406)
Q Consensus 41 ~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~------- 113 (406)
+.+.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++......
T Consensus 6 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~ 85 (272)
T PRK06142 6 ESFTVELADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLA 85 (272)
T ss_pred ceEEEEecCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccccc
Confidence 4689999999999999999999999999999999999999999999999999999999999999987542100
Q ss_pred CChhhHHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcc
Q 015492 114 GKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLP 193 (406)
Q Consensus 114 ~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~ 193 (406)
........+...+.+++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~ 165 (272)
T PRK06142 86 RPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRII 165 (272)
T ss_pred cchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHHh
Confidence 01122233444566788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHH-HHHHhhcCCCcCHHHHHHcCccceeccC-CChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHH
Q 015492 194 GYL-GEYLALTGEKLNGVEMIACGLATHYTLN-GRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETID 271 (406)
Q Consensus 194 g~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (406)
|.. +++|+++|+.++|+||+++||||+||++ +++.+.+.
T Consensus 166 G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~--------------------------------------- 206 (272)
T PRK06142 166 GDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAH--------------------------------------- 206 (272)
T ss_pred CHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHH---------------------------------------
Confidence 999 9999999999999999999999999996 66643222
Q ss_pred HhcCcCCHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcH
Q 015492 272 KCFSHDTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDF 351 (406)
Q Consensus 272 ~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~ 351 (406)
+++++|++.||.+++.+|++++.....++++++..|...+..++. ++|+
T Consensus 207 ----------------------------~~a~~ia~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~---~~d~ 255 (272)
T PRK06142 207 ----------------------------ATAREIAAKSPLAVRGTKEVLDYMRDHRVADGLRYVATWNAAMLP---SKDL 255 (272)
T ss_pred ----------------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CccH
Confidence 458899999999999999999988778899999999988888774 9999
Q ss_pred HhhhhheeeCCCCCCCCCC
Q 015492 352 CEGIRARLVDKDFAPKWDP 370 (406)
Q Consensus 352 ~egi~afl~ek~r~P~w~~ 370 (406)
+||+.+|+ +| |+|+|++
T Consensus 256 ~egv~af~-~k-r~p~~~~ 272 (272)
T PRK06142 256 TEAIAAHM-EK-RPPEFTG 272 (272)
T ss_pred HHHHHHHh-cC-CCCCCCC
Confidence 99999999 88 8999963
No 12
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.2e-53 Score=403.16 Aligned_cols=258 Identities=24% Similarity=0.335 Sum_probs=226.9
Q ss_pred CCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhH
Q 015492 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119 (406)
Q Consensus 40 ~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (406)
++.+.++.+++|++||||||+++|++|.+|+.+|.++++.++ |+++++|||+|.|++||+|+|++++............
T Consensus 3 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 81 (262)
T PRK08140 3 YETILLAIEAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLG 81 (262)
T ss_pred CceEEEEeECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhH
Confidence 456899999999999999999999999999999999999999 9999999999999999999999987431100111111
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-HH
Q 015492 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GE 198 (406)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~ 198 (406)
..+...+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. ++
T Consensus 82 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~ 161 (262)
T PRK08140 82 ESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARAL 161 (262)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHHH
Confidence 12222234577788999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcCC
Q 015492 199 YLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHDT 278 (406)
Q Consensus 199 ~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 278 (406)
+|+++|+.++|+||+++||||+|||++++.+...
T Consensus 162 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------- 195 (262)
T PRK08140 162 GLALLGEKLSAEQAEQWGLIWRVVDDAALADEAQ---------------------------------------------- 195 (262)
T ss_pred HHHHcCCCcCHHHHHHcCCccEeeChHHHHHHHH----------------------------------------------
Confidence 9999999999999999999999999887653222
Q ss_pred HHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhhe
Q 015492 279 IEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRAR 358 (406)
Q Consensus 279 ~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~af 358 (406)
+++++|++.+|.+++.+|++++.....+++.+++.|...+..++. ++|++||+.+|
T Consensus 196 ---------------------~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~e~~~af 251 (262)
T PRK08140 196 ---------------------QLAAHLATQPTRGLALIKQAMNASATNTLDAQLDLERDLQREAGR---SADYAEGVSAF 251 (262)
T ss_pred ---------------------HHHHHHHhCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhc---ChhHHHHHHHH
Confidence 458999999999999999999988888999999999998888774 99999999999
Q ss_pred eeCCCCCCCCCC
Q 015492 359 LVDKDFAPKWDP 370 (406)
Q Consensus 359 l~ek~r~P~w~~ 370 (406)
+ +| |+|.|.+
T Consensus 252 ~-~k-r~p~~~~ 261 (262)
T PRK08140 252 L-EK-RAPRFTG 261 (262)
T ss_pred h-cC-CCCCCCC
Confidence 9 89 8999975
No 13
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.8e-53 Score=404.19 Aligned_cols=260 Identities=23% Similarity=0.370 Sum_probs=228.9
Q ss_pred CCCcEEEEEeCcEEEEEEcCCCCCCCCCH-HHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhc--CC
Q 015492 39 LQDQVLVEGRAKSRAAILNRPSNLNALNT-SMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNE--GK 115 (406)
Q Consensus 39 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~-~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~--~~ 115 (406)
|++.+.++++++|++||||||+++|++|. +|+.+|.++++.++.|+++|+|||+|.|++||+|+|++++...... ..
T Consensus 1 m~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (266)
T PRK09245 1 MTDFLLVERDGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGS 80 (266)
T ss_pred CCCceEEEEECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhcccccccc
Confidence 45679999999999999999999999995 9999999999999999999999999999999999999987542110 01
Q ss_pred hhh-HHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcch
Q 015492 116 FED-FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPG 194 (406)
Q Consensus 116 ~~~-~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g 194 (406)
... ...+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG 160 (266)
T PRK09245 81 PADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIG 160 (266)
T ss_pred chhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhh
Confidence 111 1223334456778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHh
Q 015492 195 YL-GEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKC 273 (406)
Q Consensus 195 ~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 273 (406)
.. +++|+++|++++|+||+++||||+|+|++++.+.+.
T Consensus 161 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------- 199 (266)
T PRK09245 161 MARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAAR----------------------------------------- 199 (266)
T ss_pred HHHHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHHHHH-----------------------------------------
Confidence 99 999999999999999999999999999887753222
Q ss_pred cCcCCHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHh
Q 015492 274 FSHDTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCE 353 (406)
Q Consensus 274 f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~e 353 (406)
+++++|++.||.+++.+|++++.....+++..+..|...+..++. ++|++|
T Consensus 200 --------------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~e 250 (266)
T PRK09245 200 --------------------------ALAERIAANPPHALRLTKRLLREGQHASLDTLLELSAAYQALAHH---TADHRE 250 (266)
T ss_pred --------------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CHhHHH
Confidence 458999999999999999999988778899999999888877774 999999
Q ss_pred hhhheeeCCCCCCCCCC
Q 015492 354 GIRARLVDKDFAPKWDP 370 (406)
Q Consensus 354 gi~afl~ek~r~P~w~~ 370 (406)
|+.+|+ +| |+|.|++
T Consensus 251 g~~af~-~k-r~p~~~~ 265 (266)
T PRK09245 251 AVDAFL-EK-RPPVFTG 265 (266)
T ss_pred HHHHHH-cC-CCCCCCC
Confidence 999999 89 8999974
No 14
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=7.2e-53 Score=401.52 Aligned_cols=252 Identities=24% Similarity=0.346 Sum_probs=226.8
Q ss_pred CcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHH
Q 015492 41 DQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFK 120 (406)
Q Consensus 41 ~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~ 120 (406)
..|.++++++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++... +. ..
T Consensus 2 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~----~~--~~ 75 (255)
T PRK09674 2 SELLVSRQQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEK----DL--AA 75 (255)
T ss_pred ceEEEEeECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhcc----ch--hh
Confidence 3578899999999999999999999999999999999999999999999999999999999999987531 11 11
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-HHH
Q 015492 121 NFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEY 199 (406)
Q Consensus 121 ~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~ 199 (406)
.+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus 76 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~ 155 (255)
T PRK09674 76 TLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQ 155 (255)
T ss_pred hHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHH
Confidence 1223345577788999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred HhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcCCH
Q 015492 200 LALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHDTI 279 (406)
Q Consensus 200 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 279 (406)
++++|+.++|+||+++||||+|||++++.+.+
T Consensus 156 l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a------------------------------------------------ 187 (255)
T PRK09674 156 MVLTGESITAQQAQQAGLVSEVFPPELTLERA------------------------------------------------ 187 (255)
T ss_pred HHHcCCccCHHHHHHcCCCcEecChHHHHHHH------------------------------------------------
Confidence 99999999999999999999999988765322
Q ss_pred HHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhhee
Q 015492 280 EEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRARL 359 (406)
Q Consensus 280 ~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~afl 359 (406)
.+++++|+..||.+++.+|++++.....++.++++.|...+..++ .++|++||+++|+
T Consensus 188 -------------------~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~---~~~~~~e~i~af~ 245 (255)
T PRK09674 188 -------------------LQLASKIARHSPLALRAAKQALRQSQEVDLQAGLAQERQLFTLLA---ATEDRHEGISAFL 245 (255)
T ss_pred -------------------HHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHh
Confidence 245899999999999999999998888889999999999888877 4999999999999
Q ss_pred eCCCCCCCCCC
Q 015492 360 VDKDFAPKWDP 370 (406)
Q Consensus 360 ~ek~r~P~w~~ 370 (406)
+| |+|+|.+
T Consensus 246 -~k-r~p~~~~ 254 (255)
T PRK09674 246 -EK-RTPDFKG 254 (255)
T ss_pred -cc-CCCCCCC
Confidence 88 8999975
No 15
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-52 Score=404.46 Aligned_cols=258 Identities=22% Similarity=0.278 Sum_probs=229.4
Q ss_pred CcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHH
Q 015492 41 DQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFK 120 (406)
Q Consensus 41 ~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~ 120 (406)
+.+.++.+++|++|+||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.......+.....
T Consensus 17 ~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~ 96 (277)
T PRK08258 17 RHFLWEVDDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELL 96 (277)
T ss_pred cceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999874321111222233
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccC-CCchHHHHhhcchHH-HH
Q 015492 121 NFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHP-DAGASFYLSHLPGYL-GE 198 (406)
Q Consensus 121 ~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P-~~g~~~~l~r~~g~~-a~ 198 (406)
.+......++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|++++|.. ++
T Consensus 97 ~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~ 176 (277)
T PRK08258 97 AFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRAS 176 (277)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHHH
Confidence 4445556788889999999999999999999999999999999999999999999999995 788999999999999 99
Q ss_pred HHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcCC
Q 015492 199 YLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHDT 278 (406)
Q Consensus 199 ~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 278 (406)
+|+++|+.++|+||+++||||+|+|++++.+.+.
T Consensus 177 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------- 210 (277)
T PRK08258 177 ELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQ---------------------------------------------- 210 (277)
T ss_pred HHHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHH----------------------------------------------
Confidence 9999999999999999999999999877653222
Q ss_pred HHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhhe
Q 015492 279 IEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRAR 358 (406)
Q Consensus 279 ~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~af 358 (406)
+++++|++.||.+++.+|++++.....++++.+..|...+..++. ++|++||+++|
T Consensus 211 ---------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~d~~eg~~af 266 (277)
T PRK08258 211 ---------------------ALARRLAAGPTFAHGMTKTMLHQEWDMGLEEAIEAEAQAQAICMQ---TEDFRRAYEAF 266 (277)
T ss_pred ---------------------HHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhc---CchHHHHHHHH
Confidence 458999999999999999999988888899999999999888874 99999999999
Q ss_pred eeCCCCCCCCCC
Q 015492 359 LVDKDFAPKWDP 370 (406)
Q Consensus 359 l~ek~r~P~w~~ 370 (406)
+ +| |+|.|++
T Consensus 267 ~-ek-r~p~~~~ 276 (277)
T PRK08258 267 V-AK-RKPVFEG 276 (277)
T ss_pred h-cC-CCCCCCC
Confidence 9 99 8999975
No 16
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.7e-53 Score=401.77 Aligned_cols=256 Identities=23% Similarity=0.360 Sum_probs=230.9
Q ss_pred CCCcEEEEE-eCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCC-CCcccCCChHHHHHhhhcCCh
Q 015492 39 LQDQVLVEG-RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKF 116 (406)
Q Consensus 39 ~~~~v~~~~-~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G-~~F~~G~Dl~~~~~~~~~~~~ 116 (406)
|++++.+++ +++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++... ..
T Consensus 1 ~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~----~~ 76 (260)
T PRK07657 1 MLQNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGM----NE 76 (260)
T ss_pred CCceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcC----Ch
Confidence 456788986 789999999999999999999999999999999999999999999999 599999999987531 12
Q ss_pred hhHHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH
Q 015492 117 EDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL 196 (406)
Q Consensus 117 ~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~ 196 (406)
.....+...+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~ 156 (260)
T PRK07657 77 EQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVG 156 (260)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHH
Confidence 22344555667788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcC
Q 015492 197 -GEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFS 275 (406)
Q Consensus 197 -a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~ 275 (406)
+++|+++|+.++|+||+++||||++||++++.+.+.
T Consensus 157 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------- 193 (260)
T PRK07657 157 RAKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAI------------------------------------------- 193 (260)
T ss_pred HHHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHH-------------------------------------------
Confidence 999999999999999999999999999887753322
Q ss_pred cCCHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhh
Q 015492 276 HDTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGI 355 (406)
Q Consensus 276 ~~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi 355 (406)
+++++|+.++|.+++.+|++++.....++++++..|...+..++. ++|++||+
T Consensus 194 ------------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~e~~ 246 (260)
T PRK07657 194 ------------------------EIAEKIASNGPIAVRQAKEAISNGIQVDLHTGLQIEKQAYEGTIP---TKDRLEGL 246 (260)
T ss_pred ------------------------HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhc---CHhHHHHH
Confidence 458899999999999999999988778899999999998888774 99999999
Q ss_pred hheeeCCCCCCCCCC
Q 015492 356 RARLVDKDFAPKWDP 370 (406)
Q Consensus 356 ~afl~ek~r~P~w~~ 370 (406)
++|+ +| |+|+|++
T Consensus 247 ~af~-~~-r~~~~~~ 259 (260)
T PRK07657 247 QAFK-EK-RKPMYKG 259 (260)
T ss_pred HHHh-cC-CCCCCCC
Confidence 9999 89 8999975
No 17
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-52 Score=401.49 Aligned_cols=255 Identities=25% Similarity=0.346 Sum_probs=224.0
Q ss_pred CcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHH
Q 015492 41 DQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFK 120 (406)
Q Consensus 41 ~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~ 120 (406)
+.+.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..... . .....
T Consensus 5 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~-~~~~~ 82 (263)
T PRK07799 5 PHALVEQRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPP-G-DSFKD 82 (263)
T ss_pred ceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccc-c-chhhh
Confidence 468899999999999999999999999999999999999999999999999999999999999998764211 1 11110
Q ss_pred H-H-HHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-H
Q 015492 121 N-F-FETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (406)
Q Consensus 121 ~-~-~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a 197 (406)
. + ...+..+ ..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 83 ~~~~~~~~~~~-~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 161 (263)
T PRK07799 83 GSYDPSRIDAL-LKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVA 161 (263)
T ss_pred hhhhhhHHHHH-HHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHHH
Confidence 1 1 1122223 346789999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcC
Q 015492 198 EYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHD 277 (406)
Q Consensus 198 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 277 (406)
++|++||+.++|+||+++||||+|||++++.+.+.
T Consensus 162 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------- 196 (263)
T PRK07799 162 CDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKAL--------------------------------------------- 196 (263)
T ss_pred HHHHHcCCCCCHHHHHHcCCccEecCcchHHHHHH---------------------------------------------
Confidence 99999999999999999999999999988753222
Q ss_pred CHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhh
Q 015492 278 TIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRA 357 (406)
Q Consensus 278 ~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~a 357 (406)
+++++|++.||.+++.+|++++.....++.++++.|...+..++. ++|++||+++
T Consensus 197 ----------------------~~a~~~~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~~~~egi~a 251 (263)
T PRK07799 197 ----------------------ELAELINANGPLAVQAILRTIRETEGMHENEAFKIDTKIGIPVFL---SEDAKEGPRA 251 (263)
T ss_pred ----------------------HHHHHHHhcChHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CccHHHHHHH
Confidence 458899999999999999999988788899999999998888774 9999999999
Q ss_pred eeeCCCCCCCCCC
Q 015492 358 RLVDKDFAPKWDP 370 (406)
Q Consensus 358 fl~ek~r~P~w~~ 370 (406)
|+ +| |+|+|..
T Consensus 252 f~-~~-r~p~~~~ 262 (263)
T PRK07799 252 FA-EK-RAPNFQG 262 (263)
T ss_pred HH-cc-CCCCCCC
Confidence 99 88 8999975
No 18
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-52 Score=400.24 Aligned_cols=253 Identities=23% Similarity=0.326 Sum_probs=228.1
Q ss_pred cEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHH
Q 015492 42 QVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKN 121 (406)
Q Consensus 42 ~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~ 121 (406)
.+.++++++|++||||||++ |++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++... ........
T Consensus 3 ~i~~~~~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~---~~~~~~~~ 78 (257)
T PRK07658 3 FLSVRVEDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSV---TEAEQATE 78 (257)
T ss_pred eEEEEeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcc---CchhhHHH
Confidence 58889999999999999976 999999999999999999999999999999999999999999987542 11122233
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-HHHH
Q 015492 122 FFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYL 200 (406)
Q Consensus 122 ~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l 200 (406)
+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++|
T Consensus 79 ~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l 158 (257)
T PRK07658 79 LAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEM 158 (257)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHH
Confidence 445556788889999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred hhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcCCHH
Q 015492 201 ALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHDTIE 280 (406)
Q Consensus 201 ~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 280 (406)
+++|++++|+||+++||||+|||++++.+.+.
T Consensus 159 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------------ 190 (257)
T PRK07658 159 MLTSEPITGAEALKWGLVNGVFPEETLLDDAK------------------------------------------------ 190 (257)
T ss_pred HHcCCCcCHHHHHHcCCcCeecChhHHHHHHH------------------------------------------------
Confidence 99999999999999999999999887753222
Q ss_pred HHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhheee
Q 015492 281 EIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRARLV 360 (406)
Q Consensus 281 ~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~afl~ 360 (406)
+++++|++.+|.+++.+|++++.....+++++++.|...+..++. ++|++||+.+|+
T Consensus 191 -------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~egi~af~- 247 (257)
T PRK07658 191 -------------------KLAKKIAGKSPATTRAVLELLQTTKSSSYYEGVKREAKIFGEVFT---SEDAKEGVQAFL- 247 (257)
T ss_pred -------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHH-
Confidence 458899999999999999999988778899999999999988874 999999999999
Q ss_pred CCCCCCCCCC
Q 015492 361 DKDFAPKWDP 370 (406)
Q Consensus 361 ek~r~P~w~~ 370 (406)
+| |+|+|++
T Consensus 248 ~k-r~p~~~~ 256 (257)
T PRK07658 248 EK-RKPSFSG 256 (257)
T ss_pred cC-CCCCCCC
Confidence 88 8999975
No 19
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.2e-52 Score=401.10 Aligned_cols=258 Identities=21% Similarity=0.305 Sum_probs=231.2
Q ss_pred CCCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCC-CCcccCCChHHHHHhhhcCChh
Q 015492 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFE 117 (406)
Q Consensus 39 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G-~~F~~G~Dl~~~~~~~~~~~~~ 117 (406)
..+.|.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.... ...+
T Consensus 9 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~--~~~~ 86 (269)
T PRK06127 9 PTGKLLAEKTGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESR--SDAE 86 (269)
T ss_pred CCCceEEEEECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcc--cchH
Confidence 455699999999999999999999999999999999999999999999999999998 7999999999875421 1122
Q ss_pred hHHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-
Q 015492 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (406)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~- 196 (406)
....+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 87 ~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 166 (269)
T PRK06127 87 AVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSA 166 (269)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHH
Confidence 2334455566778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCc
Q 015492 197 GEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSH 276 (406)
Q Consensus 197 a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 276 (406)
+++|++||+.++|+||+++||||+|||++++.+.+.
T Consensus 167 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------- 202 (269)
T PRK06127 167 AKDLFYTARRFDAAEALRIGLVHRVTAADDLETALA-------------------------------------------- 202 (269)
T ss_pred HHHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHH--------------------------------------------
Confidence 999999999999999999999999999887753322
Q ss_pred CCHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhh
Q 015492 277 DTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIR 356 (406)
Q Consensus 277 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~ 356 (406)
+++++++..+|.+++.+|++++.....+++..++.|...+..++. ++|++||+.
T Consensus 203 -----------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~e~~~ 256 (269)
T PRK06127 203 -----------------------DYAATIAGNAPLTLRAAKRAIAELLKDEPERDMAACQALVAACFD---SEDYREGRA 256 (269)
T ss_pred -----------------------HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhc---ChHHHHHHH
Confidence 458999999999999999999988778899999999998888774 999999999
Q ss_pred heeeCCCCCCCCCC
Q 015492 357 ARLVDKDFAPKWDP 370 (406)
Q Consensus 357 afl~ek~r~P~w~~ 370 (406)
+|+ +| |+|+|++
T Consensus 257 af~-ek-r~p~~~~ 268 (269)
T PRK06127 257 AFM-EK-RKPVFKG 268 (269)
T ss_pred HHh-cC-CCCCCCC
Confidence 999 99 8999975
No 20
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=1.8e-52 Score=400.00 Aligned_cols=255 Identities=24% Similarity=0.381 Sum_probs=230.0
Q ss_pred CCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCC-CCcccCCChHHHHHhhhcCChhh
Q 015492 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFED 118 (406)
Q Consensus 40 ~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G-~~F~~G~Dl~~~~~~~~~~~~~~ 118 (406)
+..+.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++... ....
T Consensus 3 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~----~~~~ 78 (260)
T PRK05809 3 LKNVILEKEGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDL----NEEE 78 (260)
T ss_pred cceEEEEEeCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhcc----ChHH
Confidence 45688999999999999999999999999999999999999999999999999999 999999999987542 1122
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-H
Q 015492 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (406)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a 197 (406)
...+......++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 79 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 158 (260)
T PRK05809 79 GRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKA 158 (260)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 223344456678889999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcC
Q 015492 198 EYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHD 277 (406)
Q Consensus 198 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 277 (406)
++|+++|+.++|+||+++||||+|+|++++.+.
T Consensus 159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~----------------------------------------------- 191 (260)
T PRK05809 159 KELIYTGDMINAEEALRIGLVNKVVEPEKLMEE----------------------------------------------- 191 (260)
T ss_pred HHHHHhCCCCCHHHHHHcCCCCcccChHHHHHH-----------------------------------------------
Confidence 999999999999999999999999998776532
Q ss_pred CHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhh
Q 015492 278 TIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRA 357 (406)
Q Consensus 278 ~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~a 357 (406)
+.+++++|+..+|.+++.+|++++.....+++++++.|...+..++. ++|++||+++
T Consensus 192 --------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~egi~a 248 (260)
T PRK05809 192 --------------------AKALANKIAANAPIAVKLCKDAINRGMQVDIDTAVAIEAEDFGECFS---TEDQTEGMTA 248 (260)
T ss_pred --------------------HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---CHHHHHHHHH
Confidence 22558999999999999999999998888899999999999988884 9999999999
Q ss_pred eeeCCCCCCCCCC
Q 015492 358 RLVDKDFAPKWDP 370 (406)
Q Consensus 358 fl~ek~r~P~w~~ 370 (406)
|+ +| |+|+|.+
T Consensus 249 f~-~~-r~p~~~~ 259 (260)
T PRK05809 249 FV-EK-REKNFKN 259 (260)
T ss_pred Hh-cC-CCCCCCC
Confidence 99 89 8999975
No 21
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-52 Score=398.28 Aligned_cols=252 Identities=25% Similarity=0.339 Sum_probs=222.7
Q ss_pred CCCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhh
Q 015492 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (406)
Q Consensus 39 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~ 118 (406)
|++.+.++++++|++|+||||+++|++|.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++... .....
T Consensus 1 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~---~~~~~ 77 (254)
T PRK08252 1 MSDEVLVERRGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARG---ERPSI 77 (254)
T ss_pred CCceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcc---cchhh
Confidence 456789999999999999999999999999999999999999999999999999999999999999987541 11111
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-H
Q 015492 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (406)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a 197 (406)
....+..+. ...+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +
T Consensus 78 ---~~~~~~~~~--~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a 152 (254)
T PRK08252 78 ---PGRGFGGLT--ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIA 152 (254)
T ss_pred ---hHHHHHHHH--HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHH
Confidence 111122222 1479999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcC
Q 015492 198 EYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHD 277 (406)
Q Consensus 198 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 277 (406)
++|+++|++++|+||+++||||+|||++++.+.+
T Consensus 153 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a---------------------------------------------- 186 (254)
T PRK08252 153 MELALTGDMLTAERAHELGLVNRLTEPGQALDAA---------------------------------------------- 186 (254)
T ss_pred HHHHHcCCccCHHHHHHcCCcceecCcchHHHHH----------------------------------------------
Confidence 9999999999999999999999999998775322
Q ss_pred CHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhh
Q 015492 278 TIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRA 357 (406)
Q Consensus 278 ~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~a 357 (406)
.+++++++..||.+++.+|++++......+.++++.|...+..++. ++|++||+.+
T Consensus 187 ---------------------~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~~~~eg~~a 242 (254)
T PRK08252 187 ---------------------LELAERIAANGPLAVAASKRIVVESGDWSEDEMFARQRELIAPVFT---SADAKEGATA 242 (254)
T ss_pred ---------------------HHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CchHHHHHHH
Confidence 2458999999999999999999988777899999999998888774 9999999999
Q ss_pred eeeCCCCCCCCCC
Q 015492 358 RLVDKDFAPKWDP 370 (406)
Q Consensus 358 fl~ek~r~P~w~~ 370 (406)
|+ +| |+|+|.+
T Consensus 243 f~-~k-r~p~~~~ 253 (254)
T PRK08252 243 FA-EK-RAPVWTG 253 (254)
T ss_pred Hh-cC-CCCCCCC
Confidence 99 88 8999975
No 22
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=2.1e-53 Score=392.26 Aligned_cols=251 Identities=25% Similarity=0.364 Sum_probs=222.6
Q ss_pred cEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHH
Q 015492 42 QVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKN 121 (406)
Q Consensus 42 ~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~ 121 (406)
......+++|+.|+||||+++|+|+..++.+|.++|..++.|++++++||||.|++||+|+|++++...... +....
T Consensus 38 ~~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~---~~~~~ 114 (290)
T KOG1680|consen 38 IELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQ---DVSDG 114 (290)
T ss_pred eEEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhcccc---ccccc
Confidence 345567789999999999999999999999999999999999999999999999999999999998752111 11111
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-HHHH
Q 015492 122 FFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYL 200 (406)
Q Consensus 122 ~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l 200 (406)
.+ .+.+..+.+.+||+||+|||+|+|||++|+++||+|||+++|+|++++.++|++|.+|++++|+|.+|.. |+++
T Consensus 115 ~~---~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~ 191 (290)
T KOG1680|consen 115 IF---LRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEM 191 (290)
T ss_pred cc---cchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHH
Confidence 11 1223334489999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred hhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcCCHH
Q 015492 201 ALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHDTIE 280 (406)
Q Consensus 201 ~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 280 (406)
++||++++|+||+++||||+|||.+++.. ++
T Consensus 192 ~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~--eA----------------------------------------------- 222 (290)
T KOG1680|consen 192 ILTGRRLGAQEAKKIGLVNKVVPSGDALG--EA----------------------------------------------- 222 (290)
T ss_pred HHhcCcccHHHHHhCCceeEeecchhHHH--HH-----------------------------------------------
Confidence 99999999999999999999999998642 22
Q ss_pred HHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhheee
Q 015492 281 EIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRARLV 360 (406)
Q Consensus 281 ~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~afl~ 360 (406)
.+++++|+++||..++..|+.++.+.+.++.+++..|...+...+. .+|.+|||.+|.
T Consensus 223 ------------------v~l~~~Ia~~~~~~v~~~K~svn~~~e~~l~e~l~~e~~~~~s~~~---~~d~~Eg~~~f~- 280 (290)
T KOG1680|consen 223 ------------------VKLAEQIAKNSPLVVRADKESVNAAYETTLFEGLELERDLFGSTFA---TEDRLEGMTAFA- 280 (290)
T ss_pred ------------------HHHHHHHHhCCHHHHHHHHHHHHHHhhccHHHHHHhhhhhhhhhhh---hHHHHHHHHHhc-
Confidence 2568999999999999999999999999999999999999988775 899999999998
Q ss_pred CCCCCCCCCC
Q 015492 361 DKDFAPKWDP 370 (406)
Q Consensus 361 ek~r~P~w~~ 370 (406)
+| |+|+|+.
T Consensus 281 ~k-r~~~~~k 289 (290)
T KOG1680|consen 281 EK-RKPKFSK 289 (290)
T ss_pred cc-CCccccc
Confidence 89 9999974
No 23
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=1.6e-52 Score=399.37 Aligned_cols=254 Identities=25% Similarity=0.328 Sum_probs=224.2
Q ss_pred EEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHH
Q 015492 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNF 122 (406)
Q Consensus 43 v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 122 (406)
|.++++++|++||||||+++|+||.+|+.+|.++++.++.|+ +++|||||.|++||+|+|++++..... ...+....+
T Consensus 1 ~~~e~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~~~~~ 78 (256)
T TIGR02280 1 ILSALEAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPG-GAPDLGRTI 78 (256)
T ss_pred CeEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccc-cchhHHHHH
Confidence 457889999999999999999999999999999999999998 999999999999999999998753210 111111122
Q ss_pred HHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-HHHHh
Q 015492 123 FETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYLA 201 (406)
Q Consensus 123 ~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l~ 201 (406)
...+..++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +++|+
T Consensus 79 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~ 158 (256)
T TIGR02280 79 ETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLA 158 (256)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHH
Confidence 22234567788999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred hcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcCCHHH
Q 015492 202 LTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHDTIEE 281 (406)
Q Consensus 202 ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~ 281 (406)
++|+.++|+||+++||||+|+|++++.+.+.
T Consensus 159 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------------- 189 (256)
T TIGR02280 159 MLGEKLDARTAASWGLIWQVVDDAALMDEAQ------------------------------------------------- 189 (256)
T ss_pred HcCCCCCHHHHHHcCCcceeeChHHHHHHHH-------------------------------------------------
Confidence 9999999999999999999999887653222
Q ss_pred HHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhheeeC
Q 015492 282 IIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRARLVD 361 (406)
Q Consensus 282 i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~afl~e 361 (406)
+++++|++.||.+++.+|++++......+.++++.|...+..++. ++|++||+.+|+ +
T Consensus 190 ------------------~~a~~la~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~eg~~af~-~ 247 (256)
T TIGR02280 190 ------------------ALAVHLAAQPTRGLALTKRAIQAAATNSLDTQLDLERDLQRELGR---SADYAEGVTAFL-D 247 (256)
T ss_pred ------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---ChhHHHHHHHHH-c
Confidence 458999999999999999999988878899999999998888774 999999999999 8
Q ss_pred CCCCCCCCC
Q 015492 362 KDFAPKWDP 370 (406)
Q Consensus 362 k~r~P~w~~ 370 (406)
| |+|+|++
T Consensus 248 k-r~p~~~~ 255 (256)
T TIGR02280 248 K-RNPQFTG 255 (256)
T ss_pred C-CCCCCCC
Confidence 9 8999975
No 24
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=2.3e-52 Score=402.20 Aligned_cols=256 Identities=25% Similarity=0.331 Sum_probs=224.7
Q ss_pred EEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcC---C----
Q 015492 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEG---K---- 115 (406)
Q Consensus 43 v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~---~---- 115 (406)
+..+.+++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++....... +
T Consensus 10 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 89 (275)
T PLN02664 10 IQKSPNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRS 89 (275)
T ss_pred EEecCCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhh
Confidence 445568999999999999999999999999999999999999999999999999999999999875421100 1
Q ss_pred hhhHHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchH
Q 015492 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY 195 (406)
Q Consensus 116 ~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~ 195 (406)
......+...+.+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~ 169 (275)
T PLN02664 90 GERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGY 169 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCH
Confidence 11222334455667888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHhhcCCCcCHHHHHHcCccceeccC-CChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHh
Q 015492 196 L-GEYLALTGEKLNGVEMIACGLATHYTLN-GRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKC 273 (406)
Q Consensus 196 ~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 273 (406)
. +++|++||+.++|+||+++||||+|||+ +++.+..
T Consensus 170 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~------------------------------------------ 207 (275)
T PLN02664 170 GNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGV------------------------------------------ 207 (275)
T ss_pred HHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHH------------------------------------------
Confidence 9 9999999999999999999999999995 6554322
Q ss_pred cCcCCHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHh
Q 015492 274 FSHDTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCE 353 (406)
Q Consensus 274 f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~e 353 (406)
.+++++|+.++|.+++.+|++++.....++.++++.|...+..++. ++|++|
T Consensus 208 -------------------------~~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~e 259 (275)
T PLN02664 208 -------------------------RLIAEGIAAKSPLAVTGTKAVLLRSRELSVEQGLDYVATWNSAMLV---SDDLNE 259 (275)
T ss_pred -------------------------HHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc---ChhHHH
Confidence 2458999999999999999999988778899999999988877764 999999
Q ss_pred hhhheeeCCCCCCCCCC
Q 015492 354 GIRARLVDKDFAPKWDP 370 (406)
Q Consensus 354 gi~afl~ek~r~P~w~~ 370 (406)
|+++|+ +| |+|.|++
T Consensus 260 g~~af~-ek-r~p~~~~ 274 (275)
T PLN02664 260 AVSAQI-QK-RKPVFAK 274 (275)
T ss_pred HHHHHh-cc-CCCCCCC
Confidence 999999 89 8999974
No 25
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-52 Score=399.01 Aligned_cols=252 Identities=23% Similarity=0.291 Sum_probs=221.2
Q ss_pred EEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHH
Q 015492 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNF 122 (406)
Q Consensus 43 v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 122 (406)
|.++++++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++....... ...+
T Consensus 1 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~----~~~~ 76 (255)
T PRK06563 1 VSRERRGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAG----GFPF 76 (255)
T ss_pred CeEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccc----hhhh
Confidence 457889999999999999999999999999999999999999999999999999999999999875421111 1111
Q ss_pred HHH-HHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-HHHH
Q 015492 123 FET-LYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYL 200 (406)
Q Consensus 123 ~~~-~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l 200 (406)
... ...+...+..+||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|.. +++|
T Consensus 77 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l 156 (255)
T PRK06563 77 PEGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRY 156 (255)
T ss_pred hhhhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHH
Confidence 111 12223357899999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred hhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcCCHH
Q 015492 201 ALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHDTIE 280 (406)
Q Consensus 201 ~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 280 (406)
++||+.++|+||+++||||+|+|++++.+.+.
T Consensus 157 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------------ 188 (255)
T PRK06563 157 LLTGDEFDAQEALRLGLVQEVVPPGEQLERAI------------------------------------------------ 188 (255)
T ss_pred HHcCCCcCHHHHHHcCCCcEeeCHHHHHHHHH------------------------------------------------
Confidence 99999999999999999999999877653222
Q ss_pred HHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhheee
Q 015492 281 EIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRARLV 360 (406)
Q Consensus 281 ~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~afl~ 360 (406)
+++++|++.+|.+++.+|++++.....++.++++.|...+..++. ++|++||+.+|+
T Consensus 189 -------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~eg~~af~- 245 (255)
T PRK06563 189 -------------------ELAERIARAAPLGVQATLASARAAVREGEAAAAAQLPPELRPLFT---SEDAKEGVQAFL- 245 (255)
T ss_pred -------------------HHHHHHHhcCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CchHHHHHHHHh-
Confidence 458899999999999999999988778899999999988888774 999999999999
Q ss_pred CCCCCCCCCC
Q 015492 361 DKDFAPKWDP 370 (406)
Q Consensus 361 ek~r~P~w~~ 370 (406)
+| |+|.|++
T Consensus 246 ~k-r~p~~~~ 254 (255)
T PRK06563 246 ER-RPARFKG 254 (255)
T ss_pred cC-CCCCCCC
Confidence 89 8999974
No 26
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.9e-52 Score=399.56 Aligned_cols=255 Identities=21% Similarity=0.324 Sum_probs=228.3
Q ss_pred CCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhH
Q 015492 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119 (406)
Q Consensus 40 ~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (406)
.+.+.++.+++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++... ......
T Consensus 10 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~---~~~~~~ 86 (266)
T PRK08139 10 APLLLREDRDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAA---RGLAYF 86 (266)
T ss_pred CCceEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcc---cchhHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999987531 112223
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-HH
Q 015492 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GE 198 (406)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~ 198 (406)
..++..+.+++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++| +++|++++|.. ++
T Consensus 87 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A~ 165 (266)
T PRK08139 87 RALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQAM 165 (266)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHHH
Confidence 34455566788889999999999999999999999999999999999999999999999999765 56799999999 99
Q ss_pred HHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcCC
Q 015492 199 YLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHDT 278 (406)
Q Consensus 199 ~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 278 (406)
+|+++|+.++|+||+++||||+|+|++++.+...
T Consensus 166 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~---------------------------------------------- 199 (266)
T PRK08139 166 EMLLTGEFIDAATAREWGLVNRVVPADALDAAVA---------------------------------------------- 199 (266)
T ss_pred HHHHcCCccCHHHHHHcCCccEeeChhHHHHHHH----------------------------------------------
Confidence 9999999999999999999999999887753322
Q ss_pred HHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhhe
Q 015492 279 IEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRAR 358 (406)
Q Consensus 279 ~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~af 358 (406)
+++++|++.+|.+++.+|++++.....++++++..|...+..++. ++|++||+++|
T Consensus 200 ---------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~eg~~af 255 (266)
T PRK08139 200 ---------------------RLAAVIAAKSPAAVRIGKEAFYRQAEMPLADAYAYAGDVMAENMM---AEDAEEGIDAF 255 (266)
T ss_pred ---------------------HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhc---CchHHHHHHHH
Confidence 458999999999999999999998888899999999998888774 99999999999
Q ss_pred eeCCCCCCCCCC
Q 015492 359 LVDKDFAPKWDP 370 (406)
Q Consensus 359 l~ek~r~P~w~~ 370 (406)
+ +| |+|+|.+
T Consensus 256 ~-~k-r~p~~~~ 265 (266)
T PRK08139 256 L-EK-RPPEWRG 265 (266)
T ss_pred h-cC-CCCCCCC
Confidence 9 89 8999974
No 27
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=2e-52 Score=397.44 Aligned_cols=247 Identities=22% Similarity=0.357 Sum_probs=223.7
Q ss_pred eCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCC-CCcccCCChHHHHHhhhcCChhhHHHHHHHH
Q 015492 48 RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFEDFKNFFETL 126 (406)
Q Consensus 48 ~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G-~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 126 (406)
+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++... .......+...+
T Consensus 2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~----~~~~~~~~~~~~ 77 (251)
T PLN02600 2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKM----SPSEVQKFVNSL 77 (251)
T ss_pred CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhcc----ChHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999984 899999999987531 112233455556
Q ss_pred HHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-HHHHhhcCC
Q 015492 127 YQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYLALTGE 205 (406)
Q Consensus 127 ~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l~ltG~ 205 (406)
..++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +++|++||+
T Consensus 78 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~ 157 (251)
T PLN02600 78 RSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGR 157 (251)
T ss_pred HHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCC
Confidence 7788889999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcCCHHHHHHH
Q 015492 206 KLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHDTIEEIIDA 285 (406)
Q Consensus 206 ~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~i~~~ 285 (406)
.++|+||+++||||+|||++++.+..
T Consensus 158 ~~~a~eA~~~Glv~~vv~~~~~~~~a------------------------------------------------------ 183 (251)
T PLN02600 158 RIGAREAASMGLVNYCVPAGEAYEKA------------------------------------------------------ 183 (251)
T ss_pred ccCHHHHHHcCCCcEeeChhHHHHHH------------------------------------------------------
Confidence 99999999999999999998765322
Q ss_pred HHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhheeeCCCCC
Q 015492 286 LENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRARLVDKDFA 365 (406)
Q Consensus 286 l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~afl~ek~r~ 365 (406)
.+++++|++.+|.+++.+|++++.....++++.+..|...+..++. ++|++||+++|+ +| |+
T Consensus 184 -------------~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~eg~~af~-ek-r~ 245 (251)
T PLN02600 184 -------------LELAQEINQKGPLAIKMAKKAINEGSEVDMASGLEIEEECYEQVLK---TKDRLEGLAAFA-EK-RK 245 (251)
T ss_pred -------------HHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHh-cC-CC
Confidence 2458999999999999999999988778899999999999988884 999999999999 99 89
Q ss_pred CCCCC
Q 015492 366 PKWDP 370 (406)
Q Consensus 366 P~w~~ 370 (406)
|.|++
T Consensus 246 p~~~~ 250 (251)
T PLN02600 246 PVYTG 250 (251)
T ss_pred CCCCC
Confidence 99975
No 28
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.5e-52 Score=398.12 Aligned_cols=252 Identities=25% Similarity=0.364 Sum_probs=226.6
Q ss_pred CcEEEEE-eCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhH
Q 015492 41 DQVLVEG-RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119 (406)
Q Consensus 41 ~~v~~~~-~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (406)
+.+.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++... .. .
T Consensus 7 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~---~~---~ 80 (261)
T PRK08138 7 DVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATA---GA---I 80 (261)
T ss_pred CCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhcc---ch---h
Confidence 4577887 789999999999999999999999999999999999999999999999999999999987531 11 1
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-HH
Q 015492 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GE 198 (406)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~ 198 (406)
..+...+..++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus 81 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 160 (261)
T PRK08138 81 EMYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAM 160 (261)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHH
Confidence 22334456678888999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcCC
Q 015492 199 YLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHDT 278 (406)
Q Consensus 199 ~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 278 (406)
+|+++|+.++|+||+++||||+|||++++.+.+.
T Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------- 194 (261)
T PRK08138 161 RMALTGCMVPAPEALAIGLVSEVVEDEQTLPRAL---------------------------------------------- 194 (261)
T ss_pred HHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHH----------------------------------------------
Confidence 9999999999999999999999999887653222
Q ss_pred HHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhhe
Q 015492 279 IEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRAR 358 (406)
Q Consensus 279 ~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~af 358 (406)
++++++++.+|.+++.+|++++.....++++++..|.+.+..++. ++|++||+++|
T Consensus 195 ---------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~~~i~af 250 (261)
T PRK08138 195 ---------------------ELAREIARMPPLALAQIKEVVLAGADAPLDAALALERKAFQLLFD---SEDQKEGMDAF 250 (261)
T ss_pred ---------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHH
Confidence 447889999999999999999988888899999999999888874 99999999999
Q ss_pred eeCCCCCCCCCC
Q 015492 359 LVDKDFAPKWDP 370 (406)
Q Consensus 359 l~ek~r~P~w~~ 370 (406)
+ +| |+|+|++
T Consensus 251 ~-~k-r~~~~~~ 260 (261)
T PRK08138 251 L-EK-RKPAYKG 260 (261)
T ss_pred h-cC-CCCCCCC
Confidence 9 89 8999974
No 29
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.8e-52 Score=399.88 Aligned_cols=260 Identities=21% Similarity=0.296 Sum_probs=229.4
Q ss_pred CCCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCC-CcEEEEEEcCCCCcccCCChHHHHHhhhcCC--
Q 015492 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENP-DIGFVLMKGAGRAFCSGGDVIALYQLLNEGK-- 115 (406)
Q Consensus 39 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~-~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~-- 115 (406)
+|+.+.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+ ++++|||||.|++||+|+|++++........
T Consensus 2 ~~~~v~~~~~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 81 (266)
T PRK05981 2 QFKKVTLDFDGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSG 81 (266)
T ss_pred CcceEEEEeECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhccccccccc
Confidence 4667999999999999999999999999999999999999999876 4999999999999999999998754211000
Q ss_pred hhhHHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchH
Q 015492 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY 195 (406)
Q Consensus 116 ~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~ 195 (406)
......+...++.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~ 161 (266)
T PRK05981 82 GDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGK 161 (266)
T ss_pred chhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHH
Confidence 01122333445678888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhc
Q 015492 196 L-GEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCF 274 (406)
Q Consensus 196 ~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f 274 (406)
. +++|+++|+.++|+||+++||||+++|++++.+...
T Consensus 162 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~------------------------------------------ 199 (266)
T PRK05981 162 ARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAM------------------------------------------ 199 (266)
T ss_pred HHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHH------------------------------------------
Confidence 9 999999999999999999999999999887753222
Q ss_pred CcCCHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhh
Q 015492 275 SHDTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEG 354 (406)
Q Consensus 275 ~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~eg 354 (406)
+++++++..||.+++.+|++++.....++.+.++.|...+..++. ++|++||
T Consensus 200 -------------------------~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~---s~d~~e~ 251 (266)
T PRK05981 200 -------------------------KLAHELANGPTVALGLIRKLYWDSPENDFEEQLNLEREAQRIAGK---TEDFKEG 251 (266)
T ss_pred -------------------------HHHHHHHcCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhc---ChhHHHH
Confidence 458899999999999999999988778899999999998887774 9999999
Q ss_pred hhheeeCCCCCCCCCC
Q 015492 355 IRARLVDKDFAPKWDP 370 (406)
Q Consensus 355 i~afl~ek~r~P~w~~ 370 (406)
+.+|+ +| |+|+|++
T Consensus 252 ~~af~-~k-r~~~~~~ 265 (266)
T PRK05981 252 VGAFL-QK-RPAQFKG 265 (266)
T ss_pred HHHHh-cC-CCCCCCC
Confidence 99999 89 8999974
No 30
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.9e-52 Score=398.93 Aligned_cols=258 Identities=21% Similarity=0.319 Sum_probs=224.6
Q ss_pred CCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhH
Q 015492 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119 (406)
Q Consensus 40 ~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (406)
++.+.++.+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++........ ...
T Consensus 3 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~-~~~ 81 (262)
T PRK05995 3 YETLEIEQRGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSD-DEN 81 (262)
T ss_pred CceEEEEeeCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCc-hhh
Confidence 4578999999999999999999999999999999999999999999999999999999999999998754211111 111
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-HH
Q 015492 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GE 198 (406)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~ 198 (406)
......+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++ +++++|.. ++
T Consensus 82 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~-l~~~vg~~~a~ 160 (262)
T PRK05995 82 RADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISPY-VIRAMGERAAR 160 (262)
T ss_pred hhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHHH-HHHHhCHHHHH
Confidence 12234456788889999999999999999999999999999999999999999999999999887754 88999999 99
Q ss_pred HHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcCC
Q 015492 199 YLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHDT 278 (406)
Q Consensus 199 ~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 278 (406)
+|+++|+.++|+||+++||||+|||++++.+.+.
T Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------- 194 (262)
T PRK05995 161 RYFLTAERFDAAEALRLGLVHEVVPAEALDAKVD---------------------------------------------- 194 (262)
T ss_pred HHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHH----------------------------------------------
Confidence 9999999999999999999999999877653222
Q ss_pred HHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHhcccCCCCcHHhhhhh
Q 015492 279 IEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQC-LVREYRITLNGISKKVSNDFCEGIRA 357 (406)
Q Consensus 279 ~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~-l~~e~~~~~~~~~~~~s~d~~egi~a 357 (406)
+++++|++.||.+++.+|++++.....++... ++.|...+..++ .++|++||+.+
T Consensus 195 ---------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~---~~~d~~e~~~a 250 (262)
T PRK05995 195 ---------------------ELLAALVANSPQAVRAGKRLVRDVAGRPIDAALIADTASRIALIR---ATEEAREGVAA 250 (262)
T ss_pred ---------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHh---cCHHHHHHHHH
Confidence 45899999999999999999998777788888 787877777766 38999999999
Q ss_pred eeeCCCCCCCCCCC
Q 015492 358 RLVDKDFAPKWDPP 371 (406)
Q Consensus 358 fl~ek~r~P~w~~~ 371 (406)
|+ +| |+|.|+++
T Consensus 251 f~-~k-r~p~~~~~ 262 (262)
T PRK05995 251 FL-EK-RKPAWRGR 262 (262)
T ss_pred Hh-cC-CCCCCCCC
Confidence 99 89 89999753
No 31
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5e-52 Score=396.90 Aligned_cols=257 Identities=23% Similarity=0.317 Sum_probs=231.0
Q ss_pred CCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhH
Q 015492 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119 (406)
Q Consensus 40 ~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (406)
+..+.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.|++||+|+|++++..... ......
T Consensus 2 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~-~~~~~~ 80 (260)
T PRK07511 2 SAELLSRREGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRA-KPPSVQ 80 (260)
T ss_pred CCeeEEEeECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhccc-ccchhH
Confidence 3458889999999999999999999999999999999999999999999999999999999999998754211 112233
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-HH
Q 015492 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GE 198 (406)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~ 198 (406)
..++..+++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus 81 ~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~ 160 (260)
T PRK07511 81 AASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLAT 160 (260)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHH
Confidence 44556677888899999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcCC
Q 015492 199 YLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHDT 278 (406)
Q Consensus 199 ~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 278 (406)
+|++||++++|+||+++||||+||+++++.+.+.
T Consensus 161 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~---------------------------------------------- 194 (260)
T PRK07511 161 ELLLEGKPISAERLHALGVVNRLAEPGQALAEAL---------------------------------------------- 194 (260)
T ss_pred HHHHhCCCCCHHHHHHcCCccEeeCchHHHHHHH----------------------------------------------
Confidence 9999999999999999999999999877643221
Q ss_pred HHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhhe
Q 015492 279 IEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRAR 358 (406)
Q Consensus 279 ~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~af 358 (406)
++++++++++|.+++.+|+.++.....++.+++..|...+..++. ++|++||+++|
T Consensus 195 ---------------------~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~~~i~~f 250 (260)
T PRK07511 195 ---------------------ALADQLAAGSPNALARIKSLIADAPEATLAAQLEAERDHFVASLH---HADALEGIAAF 250 (260)
T ss_pred ---------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---CchHHHHHHHH
Confidence 457899999999999999999988888999999999999988874 99999999999
Q ss_pred eeCCCCCCCCC
Q 015492 359 LVDKDFAPKWD 369 (406)
Q Consensus 359 l~ek~r~P~w~ 369 (406)
+ +| |+|.|+
T Consensus 251 ~-~~-r~~~~~ 259 (260)
T PRK07511 251 L-EK-RAPDYK 259 (260)
T ss_pred h-cc-CCCCCC
Confidence 9 88 899995
No 32
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.3e-52 Score=395.05 Aligned_cols=253 Identities=24% Similarity=0.353 Sum_probs=220.5
Q ss_pred CCCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCC-CCcccCCChHHHHHhhhcCChh
Q 015492 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFE 117 (406)
Q Consensus 39 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G-~~F~~G~Dl~~~~~~~~~~~~~ 117 (406)
+++.+.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++.... ...
T Consensus 2 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~---~~~ 78 (259)
T PRK06494 2 ALPFSTVERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGG---KRG 78 (259)
T ss_pred CCceeEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcC---cch
Confidence 456789999999999999999999999999999999999999999999999999998 7999999999875421 111
Q ss_pred hHHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-
Q 015492 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (406)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~- 196 (406)
... ..+..+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 79 ~~~---~~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~ 154 (259)
T PRK06494 79 WPE---SGFGGL-TSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKR 154 (259)
T ss_pred hhh---HHHHHH-HHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHH
Confidence 111 111222 334589999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCc
Q 015492 197 GEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSH 276 (406)
Q Consensus 197 a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 276 (406)
+++|+++|+.++|+||+++||||++||++++.+...
T Consensus 155 a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~-------------------------------------------- 190 (259)
T PRK06494 155 AMGMILTGRRVTAREGLELGFVNEVVPAGELLAAAE-------------------------------------------- 190 (259)
T ss_pred HHHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHH--------------------------------------------
Confidence 999999999999999999999999999887653222
Q ss_pred CCHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHH--HHHHHHhcccCCCCcHHhh
Q 015492 277 DTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVRE--YRITLNGISKKVSNDFCEG 354 (406)
Q Consensus 277 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e--~~~~~~~~~~~~s~d~~eg 354 (406)
+++++|+..||.+++.+|++++.....+++++++.| ...+..++ .++|++||
T Consensus 191 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~~~d~~eg 244 (259)
T PRK06494 191 -----------------------RWADDILACSPLSIRASKQAVYRGLEVSLEEAITAQRDYPAVEARR---ASQDYIEG 244 (259)
T ss_pred -----------------------HHHHHHHhcCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh---cCccHHHH
Confidence 458999999999999999999988778899999988 44555655 49999999
Q ss_pred hhheeeCCCCCCCCCC
Q 015492 355 IRARLVDKDFAPKWDP 370 (406)
Q Consensus 355 i~afl~ek~r~P~w~~ 370 (406)
+.+|+ +| |+|+|++
T Consensus 245 ~~af~-~k-r~p~~~~ 258 (259)
T PRK06494 245 PKAFA-EK-RPPRWKG 258 (259)
T ss_pred HHHHH-cc-CCCCCCC
Confidence 99999 88 8999974
No 33
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=8.8e-52 Score=397.89 Aligned_cols=254 Identities=22% Similarity=0.284 Sum_probs=220.7
Q ss_pred cCCCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChh
Q 015492 38 YLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFE 117 (406)
Q Consensus 38 ~~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~ 117 (406)
..|+.+.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..........
T Consensus 5 ~~~~~i~~~~~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 84 (275)
T PRK09120 5 NRWDTVKVEVEDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEI 84 (275)
T ss_pred cccccEEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhH
Confidence 34667999999999999999999999999999999999999999999999999999999999999999875321111111
Q ss_pred hHHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-
Q 015492 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (406)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~- 196 (406)
....+....+.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 85 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~ 164 (275)
T PRK09120 85 LQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRD 164 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHH
Confidence 1222333456678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCc
Q 015492 197 GEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSH 276 (406)
Q Consensus 197 a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 276 (406)
+++|+++|+.++|+||+++|||++|||++++.+.+.
T Consensus 165 a~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------- 200 (275)
T PRK09120 165 ALYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTR-------------------------------------------- 200 (275)
T ss_pred HHHHHhcCCccCHHHHHHcCCcceecCHHHHHHHHH--------------------------------------------
Confidence 999999999999999999999999999988764322
Q ss_pred CCHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHH--HHhcccCCCC-cHHh
Q 015492 277 DTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRIT--LNGISKKVSN-DFCE 353 (406)
Q Consensus 277 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~--~~~~~~~~s~-d~~e 353 (406)
+++++|+..+|.+++.+|++++.....++.+.++.|.... ..++ .++ |++|
T Consensus 201 -----------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~d~~e 254 (275)
T PRK09120 201 -----------------------ELAAKLLEKNPVVLRAAKDGFKRVRELTWDQAEDYLYAKLEQANSL---DPEGGREE 254 (275)
T ss_pred -----------------------HHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh---CCHHHHHH
Confidence 4589999999999999999999988888999988876543 3334 377 8999
Q ss_pred hhhheeeCC
Q 015492 354 GIRARLVDK 362 (406)
Q Consensus 354 gi~afl~ek 362 (406)
|+++|+ +|
T Consensus 255 g~~afl-~k 262 (275)
T PRK09120 255 GLKQFL-DD 262 (275)
T ss_pred HHHHHH-hc
Confidence 999999 76
No 34
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-51 Score=394.72 Aligned_cols=253 Identities=25% Similarity=0.362 Sum_probs=227.8
Q ss_pred CcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHH
Q 015492 41 DQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFK 120 (406)
Q Consensus 41 ~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~ 120 (406)
..+.++.+++|++||||||+++|++|.+|+.+|.++++.+ .|+++++|||+|.|++||+|+|++++... .......
T Consensus 6 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~---~~~~~~~ 81 (260)
T PRK07659 6 ESVVVKYEGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSS---NDESKFD 81 (260)
T ss_pred ceEEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhc---cCchhHH
Confidence 4689999999999999999999999999999999999999 58899999999999999999999987542 1122234
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-HHH
Q 015492 121 NFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEY 199 (406)
Q Consensus 121 ~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~ 199 (406)
.++..+++++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus 82 ~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~ 161 (260)
T PRK07659 82 GVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQ 161 (260)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHH
Confidence 5566677788889999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcCCH
Q 015492 200 LALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHDTI 279 (406)
Q Consensus 200 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 279 (406)
|+++|+.++|+||+++||||++| ++++.+..
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a------------------------------------------------ 192 (260)
T PRK07659 162 IIWEGKKLSATEALDLGLIDEVI-GGDFQTAA------------------------------------------------ 192 (260)
T ss_pred HHHhCCccCHHHHHHcCChHHHh-hhHHHHHH------------------------------------------------
Confidence 99999999999999999999999 66664322
Q ss_pred HHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhhee
Q 015492 280 EEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRARL 359 (406)
Q Consensus 280 ~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~afl 359 (406)
.+++++|++.||.+++.+|++++......+++.++.|...+..++. ++|++||+.+|+
T Consensus 193 -------------------~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~~~~egi~af~ 250 (260)
T PRK07659 193 -------------------KQKISEWLQKPLKAMIETKQIYCELNRSQLEQVLQLEKRAQYAMRQ---TADHKEGIRAFL 250 (260)
T ss_pred -------------------HHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---CHhHHHHHHHHh
Confidence 2458899999999999999999988888899999999998888774 999999999999
Q ss_pred eCCCCCCCCCC
Q 015492 360 VDKDFAPKWDP 370 (406)
Q Consensus 360 ~ek~r~P~w~~ 370 (406)
+| |+|+|++
T Consensus 251 -~k-r~p~~~~ 259 (260)
T PRK07659 251 -EK-RLPVFKG 259 (260)
T ss_pred -cC-CCCCCCC
Confidence 89 8999975
No 35
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-51 Score=395.00 Aligned_cols=253 Identities=23% Similarity=0.332 Sum_probs=218.2
Q ss_pred CCcEEEEE-eCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhh
Q 015492 40 QDQVLVEG-RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (406)
Q Consensus 40 ~~~v~~~~-~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~ 118 (406)
++.+.++. +++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.... .....
T Consensus 10 ~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--~~~~~ 87 (268)
T PRK07327 10 YPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMA--DDFEV 87 (268)
T ss_pred CCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhcc--CcHHH
Confidence 45788888 5899999999999999999999999999999999999999999999999999999999875421 11222
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-H
Q 015492 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (406)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a 197 (406)
...++.....++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +
T Consensus 88 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 167 (268)
T PRK07327 88 RARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKA 167 (268)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHHH
Confidence 333445556788889999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcC
Q 015492 198 EYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHD 277 (406)
Q Consensus 198 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 277 (406)
++|++||++++|+||+++||||+++|++++.+.+.
T Consensus 168 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------- 202 (268)
T PRK07327 168 KYYLLLCEPVSGEEAERIGLVSLAVDDDELLPKAL--------------------------------------------- 202 (268)
T ss_pred HHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999999887753322
Q ss_pred CHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhc---CCHHHHHHHHHHHHHHhcccCCCCcHHhh
Q 015492 278 TIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRF---QSLDQCLVREYRITLNGISKKVSNDFCEG 354 (406)
Q Consensus 278 ~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~---~~~~~~l~~e~~~~~~~~~~~~s~d~~eg 354 (406)
+++++|++.+|.+++.+|++++.... ..++..+..+. ..+ .++|++||
T Consensus 203 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~----~~~---~~~d~~eg 253 (268)
T PRK07327 203 ----------------------EVAERLAAGSQTAIRWTKYALNNWLRMAGPTFDTSLALEF----MGF---SGPDVREG 253 (268)
T ss_pred ----------------------HHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH----HHc---cChhHHHH
Confidence 45899999999999999999986532 23555544442 233 48999999
Q ss_pred hhheeeCCCCCCCCCC
Q 015492 355 IRARLVDKDFAPKWDP 370 (406)
Q Consensus 355 i~afl~ek~r~P~w~~ 370 (406)
+.+|+ +| |+|.|.+
T Consensus 254 ~~af~-ek-r~p~~~~ 267 (268)
T PRK07327 254 LASLR-EK-RAPDFPG 267 (268)
T ss_pred HHHHH-hc-CCCCCCC
Confidence 99999 89 8999975
No 36
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-51 Score=393.57 Aligned_cols=257 Identities=19% Similarity=0.273 Sum_probs=222.8
Q ss_pred CCcEEEEEe-CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhh
Q 015492 40 QDQVLVEGR-AKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (406)
Q Consensus 40 ~~~v~~~~~-~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~ 118 (406)
++.+.++++ ++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...... ....
T Consensus 3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~-~~~~ 81 (262)
T PRK07468 3 FETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTA-DRAT 81 (262)
T ss_pred cceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhccc-chhh
Confidence 456888885 68999999999999999999999999999999999999999999999999999999987532111 1111
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-H
Q 015492 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (406)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a 197 (406)
.......+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++ +++|.. +
T Consensus 82 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~-~~vG~~~a 160 (262)
T PRK07468 82 RIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVV-ARMGEANA 160 (262)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHH-hhccHHHH
Confidence 12233445667888999999999999999999999999999999999999999999999999999998855 458998 9
Q ss_pred HHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcC
Q 015492 198 EYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHD 277 (406)
Q Consensus 198 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 277 (406)
++|+++|++++|+||+++||||+|+|++++.+...
T Consensus 161 ~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~--------------------------------------------- 195 (262)
T PRK07468 161 RRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVE--------------------------------------------- 195 (262)
T ss_pred HHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999999877643222
Q ss_pred CHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhh
Q 015492 278 TIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRA 357 (406)
Q Consensus 278 ~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~a 357 (406)
++++++++.+|.+++.+|++++......++..++.|...+..++. ++|++||+++
T Consensus 196 ----------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---s~d~~e~~~a 250 (262)
T PRK07468 196 ----------------------AEVTPYLSCAPGAVAAAKALVRALGAPIDEAVIDATIEALADTWE---TEEAREGIAA 250 (262)
T ss_pred ----------------------HHHHHHHhcCHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHhc---CHHHHHHHHH
Confidence 458899999999999999999987656678889999888888774 9999999999
Q ss_pred eeeCCCCCCCCCC
Q 015492 358 RLVDKDFAPKWDP 370 (406)
Q Consensus 358 fl~ek~r~P~w~~ 370 (406)
|+ +| |+|+|..
T Consensus 251 f~-~k-r~~~~~~ 261 (262)
T PRK07468 251 FF-DK-RAPAWRG 261 (262)
T ss_pred HH-cC-CCCCCCC
Confidence 99 99 8999964
No 37
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-51 Score=393.79 Aligned_cols=254 Identities=27% Similarity=0.387 Sum_probs=230.1
Q ss_pred CCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhH
Q 015492 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119 (406)
Q Consensus 40 ~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (406)
...+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.... ...
T Consensus 4 ~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~---~~~-- 78 (259)
T PRK06688 4 VTDLLVELEDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAP---PKP-- 78 (259)
T ss_pred CCceEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccC---cch--
Confidence 346889999999999999999999999999999999999999999999999999999999999999876421 111
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-HH
Q 015492 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GE 198 (406)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~ 198 (406)
..+...+++++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|+++++++++|.. ++
T Consensus 79 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~ 158 (259)
T PRK06688 79 PDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAA 158 (259)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHH
Confidence 23455667788889999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcCC
Q 015492 199 YLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHDT 278 (406)
Q Consensus 199 ~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 278 (406)
+++++|+.++|+||+++||||+++|++++.+.+.
T Consensus 159 ~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~---------------------------------------------- 192 (259)
T PRK06688 159 EMLLLGEPLSAEEALRIGLVNRVVPAAELDAEAD---------------------------------------------- 192 (259)
T ss_pred HHHHhCCccCHHHHHHcCCcceecCHHHHHHHHH----------------------------------------------
Confidence 9999999999999999999999999877653222
Q ss_pred HHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhhe
Q 015492 279 IEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRAR 358 (406)
Q Consensus 279 ~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~af 358 (406)
+++++|++.+|.+++.+|++++.....++++++..|...+..++. ++|+++|+++|
T Consensus 193 ---------------------~~a~~i~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~~~~~af 248 (259)
T PRK06688 193 ---------------------AQAAKLAAGPASALRYTKRAINAATLTELEEALAREAAGFGRLLR---TPDFREGATAF 248 (259)
T ss_pred ---------------------HHHHHHHhCCHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence 458899999999999999999998888999999999999888884 89999999999
Q ss_pred eeCCCCCCCCCC
Q 015492 359 LVDKDFAPKWDP 370 (406)
Q Consensus 359 l~ek~r~P~w~~ 370 (406)
+ +| |+|+|++
T Consensus 249 ~-~~-~~p~~~~ 258 (259)
T PRK06688 249 I-EK-RKPDFTG 258 (259)
T ss_pred H-cC-CCCCCCC
Confidence 9 88 8999974
No 38
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.2e-51 Score=395.09 Aligned_cols=257 Identities=22% Similarity=0.286 Sum_probs=220.1
Q ss_pred CCcEEEEEe-CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhh
Q 015492 40 QDQVLVEGR-AKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (406)
Q Consensus 40 ~~~v~~~~~-~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~ 118 (406)
++.+.++.+ ++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..... .....
T Consensus 4 ~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~-~~~~~ 82 (265)
T PRK05674 4 FQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSAD-LDYNT 82 (265)
T ss_pred cceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhccc-ccchh
Confidence 567888885 7899999999999999999999999999999999999999999999999999999998753211 01111
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-H
Q 015492 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (406)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a 197 (406)
.......+..++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++ ++++++|.. +
T Consensus 83 ~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~~~a 161 (265)
T PRK05674 83 NLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGERAA 161 (265)
T ss_pred hhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCHHHH
Confidence 11223345667888999999999999999999999999999999999999999999999999987766 488999999 9
Q ss_pred HHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcC
Q 015492 198 EYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHD 277 (406)
Q Consensus 198 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 277 (406)
++|++||+.++|+||+++||||+|||++++.+...
T Consensus 162 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------- 196 (265)
T PRK05674 162 RRYALTAERFDGRRARELGLLAESYPAAELEAQVE--------------------------------------------- 196 (265)
T ss_pred HHHHHhCcccCHHHHHHCCCcceecCHHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999999877653222
Q ss_pred CHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHH-HHHHHHhcccCCCCcHHhhhh
Q 015492 278 TIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVRE-YRITLNGISKKVSNDFCEGIR 356 (406)
Q Consensus 278 ~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e-~~~~~~~~~~~~s~d~~egi~ 356 (406)
+++++|+++||.+++.+|++++.....++++++..+ ...+..++ .++|++||++
T Consensus 197 ----------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~---~s~d~~e~~~ 251 (265)
T PRK05674 197 ----------------------AWIANLLLNSPQALRASKDLLREVGDGELSPALRRYCENAIARIR---VSAEGQEGLR 251 (265)
T ss_pred ----------------------HHHHHHHhcCHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHh---cCHHHHHHHH
Confidence 458999999999999999999988887888887653 34555555 4999999999
Q ss_pred heeeCCCCCCCCCC
Q 015492 357 ARLVDKDFAPKWDP 370 (406)
Q Consensus 357 afl~ek~r~P~w~~ 370 (406)
+|+ +| |+|.|+.
T Consensus 252 af~-~k-r~p~~~~ 263 (265)
T PRK05674 252 AFL-EK-RTPAWQT 263 (265)
T ss_pred HHH-cc-CCCCCCC
Confidence 999 88 8999974
No 39
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=1.8e-51 Score=391.99 Aligned_cols=252 Identities=18% Similarity=0.227 Sum_probs=214.5
Q ss_pred CCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCC-CCcccCCChHHHHHhhhcCChhh
Q 015492 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFED 118 (406)
Q Consensus 40 ~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G-~~F~~G~Dl~~~~~~~~~~~~~~ 118 (406)
|+.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++... .. .
T Consensus 1 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~---~~--~ 75 (256)
T TIGR03210 1 YEDILYEKRNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGG---YD--G 75 (256)
T ss_pred CCceEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcc---cc--c
Confidence 34688999999999999999999999999999999999999999999999999999 799999999987421 11 1
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-H
Q 015492 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (406)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a 197 (406)
...+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|.. |
T Consensus 76 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A 155 (256)
T TIGR03210 76 RGTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKA 155 (256)
T ss_pred hhHHHHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHH
Confidence 111223345678889999999999999999999999999999999999999999999999998888899999999999 9
Q ss_pred HHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcC
Q 015492 198 EYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHD 277 (406)
Q Consensus 198 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 277 (406)
++|+++|+.++|+||+++||||+|+|++++.+.+.
T Consensus 156 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------- 190 (256)
T TIGR03210 156 REIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQ--------------------------------------------- 190 (256)
T ss_pred HHHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999999877653222
Q ss_pred CHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHhcccCCCCcHHhhhh
Q 015492 278 TIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSL-DQCLVREYRITLNGISKKVSNDFCEGIR 356 (406)
Q Consensus 278 ~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~-~~~l~~e~~~~~~~~~~~~s~d~~egi~ 356 (406)
+++++|++.||.+++.+|++++....... .+.+ |...+..++ .++|++||+.
T Consensus 191 ----------------------~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~--~~~~~~~~~---~~~d~~e~~~ 243 (256)
T TIGR03210 191 ----------------------KWCDEIVEKSPTAIAIAKRSFNMDTAHQRGIAGM--GMYALKLYY---DTAESREGVK 243 (256)
T ss_pred ----------------------HHHHHHHhCCHHHHHHHHHHHHHhhcccchHHHH--HHHHHHHHc---cChhHHHHHH
Confidence 45899999999999999999987643321 1112 334444445 4999999999
Q ss_pred heeeCCCCCCCCCC
Q 015492 357 ARLVDKDFAPKWDP 370 (406)
Q Consensus 357 afl~ek~r~P~w~~ 370 (406)
+|+ +| |+|.|++
T Consensus 244 af~-~k-r~p~~~~ 255 (256)
T TIGR03210 244 AFQ-EK-RKPEFRK 255 (256)
T ss_pred HHh-cc-CCCCCCC
Confidence 999 99 8999974
No 40
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-51 Score=395.75 Aligned_cols=260 Identities=25% Similarity=0.349 Sum_probs=226.0
Q ss_pred CCCcEEEEEeC-cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCCh-
Q 015492 39 LQDQVLVEGRA-KSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKF- 116 (406)
Q Consensus 39 ~~~~v~~~~~~-~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~- 116 (406)
.++.+.+++++ +|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.........
T Consensus 3 ~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~ 82 (272)
T PRK06210 3 AYDAVLYEVADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRR 82 (272)
T ss_pred CcceEEEEECCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccccc
Confidence 34678999998 9999999999999999999999999999999999999999999999999999999987542110000
Q ss_pred -hhHHHH----HHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhh
Q 015492 117 -EDFKNF----FETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSH 191 (406)
Q Consensus 117 -~~~~~~----~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r 191 (406)
.....+ ...+.+++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~ 162 (272)
T PRK06210 83 DTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPR 162 (272)
T ss_pred cccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHh
Confidence 000111 112345667888999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHH-HHHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHH
Q 015492 192 LPGYL-GEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETI 270 (406)
Q Consensus 192 ~~g~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (406)
++|.. +++|++||+.++|+||+++||||+++|++++.+.+.
T Consensus 163 ~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------- 204 (272)
T PRK06210 163 LVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTL-------------------------------------- 204 (272)
T ss_pred hhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHH--------------------------------------
Confidence 99999 999999999999999999999999999877653222
Q ss_pred HHhcCcCCHHHHHHHHHhhhcccccHHHHHHHHHHHhc-CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCC
Q 015492 271 DKCFSHDTIEEIIDALENEAASSYDVWCRKAVEKLKEA-SPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSN 349 (406)
Q Consensus 271 ~~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~-~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~ 349 (406)
+++++|++. +|.++..+|++++.....+++++++.|...+..++. ++
T Consensus 205 -----------------------------~~a~~i~~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~ 252 (272)
T PRK06210 205 -----------------------------AYAEDLARNVSPASMAVIKRQLYEDAFQTLAEATARANREMHESLQ---RP 252 (272)
T ss_pred -----------------------------HHHHHHHhcCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhc---Cc
Confidence 458899985 999999999999988788899999999998888774 99
Q ss_pred cHHhhhhheeeCCCCCCCCCC
Q 015492 350 DFCEGIRARLVDKDFAPKWDP 370 (406)
Q Consensus 350 d~~egi~afl~ek~r~P~w~~ 370 (406)
|++||+++|+ +| |+|.|..
T Consensus 253 ~~~egi~af~-~k-r~p~~~~ 271 (272)
T PRK06210 253 DFIEGVASFL-EK-RPPRFPG 271 (272)
T ss_pred cHHHHHHHHh-cc-CCCCCCC
Confidence 9999999999 89 8999964
No 41
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.6e-51 Score=391.20 Aligned_cols=254 Identities=22% Similarity=0.324 Sum_probs=225.4
Q ss_pred CCCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhh
Q 015492 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (406)
Q Consensus 39 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~ 118 (406)
|+..+.++++++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||+|.|++||+|+|++++.... .....
T Consensus 2 ~~~~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~--~~~~~ 78 (257)
T PRK06495 2 MMSQLKLEVSDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVI--KGPGD 78 (257)
T ss_pred CcceEEEEeeCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhcc--CCchh
Confidence 6778999999999999999997 59999999999999999999999999999999999999999999875421 11122
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-H
Q 015492 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (406)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a 197 (406)
...+...+..++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ |+++++++++|.. +
T Consensus 79 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a 155 (257)
T PRK06495 79 LRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLT 155 (257)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHH
Confidence 23344555677888999999999999999999999999999999999999999999999996 5577899999999 9
Q ss_pred HHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcC
Q 015492 198 EYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHD 277 (406)
Q Consensus 198 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 277 (406)
++|+++|+.++|+||+++||||++||++++.+.+.
T Consensus 156 ~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~--------------------------------------------- 190 (257)
T PRK06495 156 RRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAM--------------------------------------------- 190 (257)
T ss_pred HHHHHcCCeeCHHHHHHcCCcceecCHHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999999887653222
Q ss_pred CHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhh
Q 015492 278 TIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRA 357 (406)
Q Consensus 278 ~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~a 357 (406)
+++++|++.||.+++.+|++++.....++.++++.|...+...+. ++|++||+++
T Consensus 191 ----------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~d~~egi~a 245 (257)
T PRK06495 191 ----------------------EIAREIASKSPLATRLAKDALNTIENMSLRDGYRYEQDITAKLAK---TEDAKEAQRA 245 (257)
T ss_pred ----------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---ChHHHHHHHH
Confidence 458999999999999999999988788899999999998888774 9999999999
Q ss_pred eeeCCCCCCCCCC
Q 015492 358 RLVDKDFAPKWDP 370 (406)
Q Consensus 358 fl~ek~r~P~w~~ 370 (406)
|+ +| |+|.|+.
T Consensus 246 f~-~k-r~p~~~~ 256 (257)
T PRK06495 246 FL-EK-RPPVFKG 256 (257)
T ss_pred Hh-cc-CCCCCCC
Confidence 99 89 8999974
No 42
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-51 Score=395.45 Aligned_cols=263 Identities=21% Similarity=0.271 Sum_probs=223.6
Q ss_pred ccCCCcEEEEE-eCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcC-
Q 015492 37 DYLQDQVLVEG-RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEG- 114 (406)
Q Consensus 37 ~~~~~~v~~~~-~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~- 114 (406)
...++.+.++. +++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.......
T Consensus 5 ~~~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~ 84 (276)
T PRK05864 5 RSTMSLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEG 84 (276)
T ss_pred CCCCCceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhccccccc
Confidence 34566788887 8899999999999999999999999999999999999999999999999999999999864211000
Q ss_pred --ChhhHHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccC-CCchHHHHhh
Q 015492 115 --KFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHP-DAGASFYLSH 191 (406)
Q Consensus 115 --~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P-~~g~~~~l~r 191 (406)
...........+..++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~ 164 (276)
T PRK05864 85 LTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPR 164 (276)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHh
Confidence 1111122334456677888999999999999999999999999999999999999999999999997 7889999999
Q ss_pred cchHH-HHHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHH
Q 015492 192 LPGYL-GEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETI 270 (406)
Q Consensus 192 ~~g~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (406)
++|.. +++|+++|++++|+||+++||||+|+|++++.+.+.
T Consensus 165 ~vG~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------- 206 (276)
T PRK05864 165 AIGSSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCY-------------------------------------- 206 (276)
T ss_pred hhCHHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHHHHH--------------------------------------
Confidence 99999 999999999999999999999999999887653222
Q ss_pred HHhcCcCCHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcC-CHHHHHHHHHHHHH-HhcccCCC
Q 015492 271 DKCFSHDTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQ-SLDQCLVREYRITL-NGISKKVS 348 (406)
Q Consensus 271 ~~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~-~~~~~l~~e~~~~~-~~~~~~~s 348 (406)
+++++|+..||.+++.+|++++..... ++++.+..|..... ..+ .+
T Consensus 207 -----------------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~---~~ 254 (276)
T PRK05864 207 -----------------------------AIAARMAGFSRPGIELTKRTLWSGLDAASLEAHMQAEGLGQLFVRL---LT 254 (276)
T ss_pred -----------------------------HHHHHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhc---cC
Confidence 458999999999999999999877654 68888887765322 223 38
Q ss_pred CcHHhhhhheeeCCCCCCCCCCC
Q 015492 349 NDFCEGIRARLVDKDFAPKWDPP 371 (406)
Q Consensus 349 ~d~~egi~afl~ek~r~P~w~~~ 371 (406)
+|++||+++|+ +| |+|.|++.
T Consensus 255 ~d~~e~~~af~-~k-r~p~~~~~ 275 (276)
T PRK05864 255 ANFEEAVAARA-EK-RPPVFTDD 275 (276)
T ss_pred hhHHHHHHHHh-cc-CCCCCCCC
Confidence 99999999999 99 89999753
No 43
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.6e-51 Score=392.23 Aligned_cols=254 Identities=26% Similarity=0.361 Sum_probs=220.8
Q ss_pred cCCCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCC-CCcccCCChHHHHHhhhcCCh
Q 015492 38 YLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKF 116 (406)
Q Consensus 38 ~~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G-~~F~~G~Dl~~~~~~~~~~~~ 116 (406)
.+.+.+.++.+++|++|+||||+++|+||.+|+.+|.+++++++.|+++++|||||.| ++||+|+|++++... ...
T Consensus 5 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~---~~~ 81 (262)
T PRK06144 5 TSTDELLLEVRGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAF---STA 81 (262)
T ss_pred cCCCceEEEeeCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhc---cch
Confidence 3556799999999999999999999999999999999999999999999999999999 799999999987542 111
Q ss_pred hhHHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEeccccc-ccccCCCchHHHHhhcchH
Q 015492 117 EDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQ-MGFHPDAGASFYLSHLPGY 195 (406)
Q Consensus 117 ~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~-~Gl~P~~g~~~~l~r~~g~ 195 (406)
.....+...+..++..+.++||||||+|||+|+|||++|+++||||||+++++|++||++ +|++|++|++++|++++|.
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~ 161 (262)
T PRK06144 82 EDAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGA 161 (262)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCH
Confidence 222234455667788899999999999999999999999999999999999999999997 9999999999999999999
Q ss_pred H-HHHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhc
Q 015492 196 L-GEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCF 274 (406)
Q Consensus 196 ~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f 274 (406)
. +++++++|+.++|+||+++||||+|+|++++.+.+.
T Consensus 162 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------ 199 (262)
T PRK06144 162 ARVKDMLFTARLLEAEEALAAGLVNEVVEDAALDARAD------------------------------------------ 199 (262)
T ss_pred HHHHHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHH------------------------------------------
Confidence 9 999999999999999999999999999877653222
Q ss_pred CcCCHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhh
Q 015492 275 SHDTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEG 354 (406)
Q Consensus 275 ~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~eg 354 (406)
+++++|++.||.+++.+|+.++......+ ..+...+...+ .++|++||
T Consensus 200 -------------------------~~a~~i~~~~~~a~~~~K~~l~~~~~~~l----~~~~~~~~~~~---~~~~~~e~ 247 (262)
T PRK06144 200 -------------------------ALAELLAAHAPLTLRATKEALRRLRREGL----PDGDDLIRMCY---MSEDFREG 247 (262)
T ss_pred -------------------------HHHHHHHhCCHHHHHHHHHHHHHhhhcCH----HHHHHHHHHHh---cChHHHHH
Confidence 45899999999999999999987654444 33445555555 49999999
Q ss_pred hhheeeCCCCCCCCCC
Q 015492 355 IRARLVDKDFAPKWDP 370 (406)
Q Consensus 355 i~afl~ek~r~P~w~~ 370 (406)
+.+|+ +| |+|.|.+
T Consensus 248 ~~af~-~k-r~p~~~~ 261 (262)
T PRK06144 248 VEAFL-EK-RPPKWKG 261 (262)
T ss_pred HHHHh-cC-CCCCCCC
Confidence 99999 88 8999975
No 44
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=2e-51 Score=392.38 Aligned_cols=254 Identities=19% Similarity=0.237 Sum_probs=216.8
Q ss_pred CcEEEEE-eCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCC-CCcccCCChHHHHHhhhcCChhh
Q 015492 41 DQVLVEG-RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFED 118 (406)
Q Consensus 41 ~~v~~~~-~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G-~~F~~G~Dl~~~~~~~~~~~~~~ 118 (406)
+.+.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++..... .....
T Consensus 2 ~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~-~~~~~ 80 (259)
T TIGR01929 2 TDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGY-IDDSG 80 (259)
T ss_pred ceEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccc-cchhh
Confidence 3478888 899999999999999999999999999999999999999999999999 79999999997642100 01111
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-H
Q 015492 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (406)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a 197 (406)
.. ......++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 81 -~~-~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a 158 (259)
T TIGR01929 81 -VH-RLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKA 158 (259)
T ss_pred -HH-HHHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHH
Confidence 11 11234567788899999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcC
Q 015492 198 EYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHD 277 (406)
Q Consensus 198 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 277 (406)
++|+++|+.++|+||+++||||+|||++++.+...
T Consensus 159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------- 193 (259)
T TIGR01929 159 REIWFLCRQYDAEQALDMGLVNTVVPLADLEKETV--------------------------------------------- 193 (259)
T ss_pred HHHHHhCCccCHHHHHHcCCcccccCHHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999999877653222
Q ss_pred CHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhh
Q 015492 278 TIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRA 357 (406)
Q Consensus 278 ~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~a 357 (406)
+++++|++.||.+++.+|++++..... .......|...+...+ .++|++||+++
T Consensus 194 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~---~~~d~~egi~a 247 (259)
T TIGR01929 194 ----------------------RWCREILQKSPMAIRMLKAALNADCDG-QAGLQELAGNATMLFY---MTEEGQEGRNA 247 (259)
T ss_pred ----------------------HHHHHHHhCCHHHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHh---cCccHHHHHHH
Confidence 458999999999999999999876443 3445555666666666 49999999999
Q ss_pred eeeCCCCCCCCCC
Q 015492 358 RLVDKDFAPKWDP 370 (406)
Q Consensus 358 fl~ek~r~P~w~~ 370 (406)
|+ +| |+|+|+.
T Consensus 248 f~-~k-r~p~~~~ 258 (259)
T TIGR01929 248 FL-EK-RQPDFSK 258 (259)
T ss_pred Hh-cc-CCCCCCC
Confidence 99 99 8999973
No 45
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=2.9e-51 Score=391.71 Aligned_cols=254 Identities=20% Similarity=0.314 Sum_probs=221.8
Q ss_pred CCCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCC-CCcccCCChHHHHHhhhcCChh
Q 015492 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFE 117 (406)
Q Consensus 39 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G-~~F~~G~Dl~~~~~~~~~~~~~ 117 (406)
|++.+.++++++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++.... .. .
T Consensus 1 ~~~~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~--~~-~ 76 (261)
T PRK03580 1 MSESLHTTRNGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGE--AP-D 76 (261)
T ss_pred CCceEEEEEECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccC--cc-h
Confidence 4456899999999999999995 5999999999999999999999999999999999 7999999999875321 11 1
Q ss_pred hHHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-
Q 015492 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (406)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~- 196 (406)
..+......++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..
T Consensus 77 --~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~ 154 (261)
T PRK03580 77 --ADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAI 154 (261)
T ss_pred --hhhhhhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHH
Confidence 11112223456778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCc
Q 015492 197 GEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSH 276 (406)
Q Consensus 197 a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 276 (406)
+++++++|+.++|+||+++||||+|+|++++.+.+.
T Consensus 155 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------- 190 (261)
T PRK03580 155 ANEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRAR-------------------------------------------- 190 (261)
T ss_pred HHHHHHhCCccCHHHHHHcCCCcEecCHhHHHHHHH--------------------------------------------
Confidence 999999999999999999999999999887754322
Q ss_pred CCHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHH----HHHHhcccCCCCcHH
Q 015492 277 DTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYR----ITLNGISKKVSNDFC 352 (406)
Q Consensus 277 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~----~~~~~~~~~~s~d~~ 352 (406)
+++++|+..+|.+++.+|++++.....+++++++.|.. .+..++ .++|++
T Consensus 191 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~---~~~d~~ 244 (261)
T PRK03580 191 -----------------------ELAQQLVNSAPLAIAALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVL---HSEDAL 244 (261)
T ss_pred -----------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHh---cCccHH
Confidence 45889999999999999999998877889999888864 555555 499999
Q ss_pred hhhhheeeCCCCCCCCCC
Q 015492 353 EGIRARLVDKDFAPKWDP 370 (406)
Q Consensus 353 egi~afl~ek~r~P~w~~ 370 (406)
||+++|+ +| |+|+|+.
T Consensus 245 e~~~af~-ek-r~~~~~~ 260 (261)
T PRK03580 245 EGPRAFA-EK-RDPVWKG 260 (261)
T ss_pred HHHHHHh-cC-CCCCCCC
Confidence 9999999 99 8999974
No 46
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.2e-51 Score=391.78 Aligned_cols=257 Identities=23% Similarity=0.265 Sum_probs=224.9
Q ss_pred CCCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhh
Q 015492 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (406)
Q Consensus 39 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~ 118 (406)
|++.+.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.... ......
T Consensus 1 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~-~~~~~~ 79 (262)
T PRK07509 1 MMDRVSVTIEDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSP-GNAVKL 79 (262)
T ss_pred CCceEEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhccc-chhhhh
Confidence 6778999999999999999999999999999999999999999999999999999999999999999875421 111111
Q ss_pred HHH----HHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcch
Q 015492 119 FKN----FFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPG 194 (406)
Q Consensus 119 ~~~----~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g 194 (406)
... ....+..++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g 159 (262)
T PRK07509 80 LFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVR 159 (262)
T ss_pred HhhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhC
Confidence 111 1123345666788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHh
Q 015492 195 YL-GEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKC 273 (406)
Q Consensus 195 ~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 273 (406)
.. +++|++||+.++|+||+++||||+++++ +.+.
T Consensus 160 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~--~~~~------------------------------------------- 194 (262)
T PRK07509 160 KDVARELTYTARVFSAEEALELGLVTHVSDD--PLAA------------------------------------------- 194 (262)
T ss_pred HHHHHHHHHcCCCcCHHHHHHcCChhhhhch--HHHH-------------------------------------------
Confidence 99 9999999999999999999999999954 3211
Q ss_pred cCcCCHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHh
Q 015492 274 FSHDTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCE 353 (406)
Q Consensus 274 f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~e 353 (406)
+.++++++++.+|.+++.+|++++.....++++++..|...+..++. ++|++|
T Consensus 195 ------------------------a~~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~e 247 (262)
T PRK07509 195 ------------------------ALALAREIAQRSPDAIAAAKRLINRSWTASVRALLARESVEQIRLLL---GKNQKI 247 (262)
T ss_pred ------------------------HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---ChhHHH
Confidence 12568999999999999999999988888899999999998888774 999999
Q ss_pred hhhheeeCCCCCCCCCC
Q 015492 354 GIRARLVDKDFAPKWDP 370 (406)
Q Consensus 354 gi~afl~ek~r~P~w~~ 370 (406)
|+++|+ +| |+|.|++
T Consensus 248 ~~~af~-ek-r~p~~~~ 262 (262)
T PRK07509 248 AVKAQM-KK-RAPKFLD 262 (262)
T ss_pred HHHHHh-cC-CCCCCCC
Confidence 999999 89 8999973
No 47
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.3e-51 Score=390.10 Aligned_cols=251 Identities=24% Similarity=0.388 Sum_probs=224.3
Q ss_pred CcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHH
Q 015492 41 DQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFK 120 (406)
Q Consensus 41 ~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~ 120 (406)
+++.++.+++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.............
T Consensus 2 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 81 (255)
T PRK07260 2 EHIIYEVEDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLV 81 (255)
T ss_pred CceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhHH
Confidence 45888999999999999999999999999999999999999999999999999999999999999876422211222222
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-HHH
Q 015492 121 NFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEY 199 (406)
Q Consensus 121 ~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~ 199 (406)
.+.+.+++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. +++
T Consensus 82 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~ 161 (255)
T PRK07260 82 KIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATH 161 (255)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHHH
Confidence 3444566788889999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred HhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcCCH
Q 015492 200 LALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHDTI 279 (406)
Q Consensus 200 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 279 (406)
|+++|++++|+||+++||||+++|++++.+.+.
T Consensus 162 l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------------- 194 (255)
T PRK07260 162 LAMTGEALTAEKALEYGFVYRVAESEKLEKTCE----------------------------------------------- 194 (255)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHhHHHHHHH-----------------------------------------------
Confidence 999999999999999999999999887653322
Q ss_pred HHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhhee
Q 015492 280 EEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRARL 359 (406)
Q Consensus 280 ~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~afl 359 (406)
++++++++.+|.+++.+|+.++.....+++..+..|...+..++. ++|++||+++|+
T Consensus 195 --------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~e~~~af~ 251 (255)
T PRK07260 195 --------------------QLLKKLRRGSSNSYAAIKSLVWESFFKGWEDYAKLELALQESLAF---KEDFKEGVRAFS 251 (255)
T ss_pred --------------------HHHHHHHcCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHH
Confidence 458999999999999999999988788899999999998888774 999999999999
Q ss_pred eCC
Q 015492 360 VDK 362 (406)
Q Consensus 360 ~ek 362 (406)
+|
T Consensus 252 -~k 253 (255)
T PRK07260 252 -ER 253 (255)
T ss_pred -hc
Confidence 77
No 48
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.1e-51 Score=396.67 Aligned_cols=259 Identities=21% Similarity=0.269 Sum_probs=220.3
Q ss_pred CCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcC-----
Q 015492 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEG----- 114 (406)
Q Consensus 40 ~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~----- 114 (406)
++.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.......
T Consensus 3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (296)
T PRK08260 3 YETIRYDVADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTP 82 (296)
T ss_pred cceEEEeeeCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccc
Confidence 456889999999999999999999999999999999999999999999999999999999999999875311000
Q ss_pred -------C-hhhHHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchH
Q 015492 115 -------K-FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGAS 186 (406)
Q Consensus 115 -------~-~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~ 186 (406)
. ......+......++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~ 162 (296)
T PRK08260 83 VEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASS 162 (296)
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchh
Confidence 0 01112233334567788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHH-HHHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHH
Q 015492 187 FYLSHLPGYL-GEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLR 265 (406)
Q Consensus 187 ~~l~r~~g~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (406)
++|++++|.. +++|+++|++++|+||+++||||+|||++++...+.
T Consensus 163 ~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~--------------------------------- 209 (296)
T PRK08260 163 WFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLPAAR--------------------------------- 209 (296)
T ss_pred hhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHHHHH---------------------------------
Confidence 9999999999 999999999999999999999999999877653222
Q ss_pred HHHHHHHhcCcCCHHHHHHHHHhhhcccccHHHHHHHHHHHhc-CchHHHHHHHHHHHhhc--CCHHHHHHHHHHHHHHh
Q 015492 266 KIETIDKCFSHDTIEEIIDALENEAASSYDVWCRKAVEKLKEA-SPLSLKVTLQSIREGRF--QSLDQCLVREYRITLNG 342 (406)
Q Consensus 266 ~~~~i~~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~-~p~al~~tk~~l~~~~~--~~~~~~l~~e~~~~~~~ 342 (406)
+++++|+.+ +|.+++.+|++++.... .... ....|...+..+
T Consensus 210 ----------------------------------~~a~~i~~~~~~~a~~~~K~~l~~~~~~~~~~~-~~~~e~~~~~~~ 254 (296)
T PRK08260 210 ----------------------------------ALAREIADNTSPVSVALTRQMMWRMAGADHPME-AHRVDSRAIYSR 254 (296)
T ss_pred ----------------------------------HHHHHHHhcCChHHHHHHHHHHHhcccCCCcHH-HHHHHHHHHHHH
Confidence 458899985 99999999999997642 2333 335577766666
Q ss_pred cccCCCCcHHhhhhheeeCCCCCCCCCCC
Q 015492 343 ISKKVSNDFCEGIRARLVDKDFAPKWDPP 371 (406)
Q Consensus 343 ~~~~~s~d~~egi~afl~ek~r~P~w~~~ 371 (406)
+ .++|++||+.+|+ +| |+|.|++.
T Consensus 255 ~---~~~d~~egi~af~-~k-r~p~f~~~ 278 (296)
T PRK08260 255 G---RSGDGKEGVSSFL-EK-RPAVFPGK 278 (296)
T ss_pred c---cChhHHHHHHHHh-cC-CCCCCCCC
Confidence 6 4999999999999 89 89999875
No 49
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.2e-51 Score=388.22 Aligned_cols=247 Identities=21% Similarity=0.318 Sum_probs=220.8
Q ss_pred CCcEEEE-EeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCC-CCcccCCChHHHHHhhhcCChh
Q 015492 40 QDQVLVE-GRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFE 117 (406)
Q Consensus 40 ~~~v~~~-~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G-~~F~~G~Dl~~~~~~~~~~~~~ 117 (406)
+.++.++ .+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++... +..
T Consensus 5 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~----~~~ 80 (256)
T PRK06143 5 NAHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATL----DQA 80 (256)
T ss_pred cccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhc----Chh
Confidence 3457777 4689999999999999999999999999999999999999999999999 799999999987542 122
Q ss_pred hHHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-
Q 015492 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (406)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~- 196 (406)
....+...+..++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+ |++|++++|++++|..
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~ 159 (256)
T PRK06143 81 SAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWAR 159 (256)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHH
Confidence 23345556677888899999999999999999999999999999999999999999999998 8888899999999999
Q ss_pred HHHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCc
Q 015492 197 GEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSH 276 (406)
Q Consensus 197 a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 276 (406)
+++++++|+.++|+||+++||||+|||++++.+.+.
T Consensus 160 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------- 195 (256)
T PRK06143 160 TRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVE-------------------------------------------- 195 (256)
T ss_pred HHHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHH--------------------------------------------
Confidence 999999999999999999999999999887753222
Q ss_pred CCHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhh
Q 015492 277 DTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIR 356 (406)
Q Consensus 277 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~ 356 (406)
+++++++.+||.+++.+|++++......+++.+..|...+...+. ++|++||++
T Consensus 196 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~d~~e~~~ 249 (256)
T PRK06143 196 -----------------------RLAASLAGCGPQALRQQKRLLREWEDMPLDVAIDDSVAEFGAAFL---TGEPQRHMA 249 (256)
T ss_pred -----------------------HHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhc---ChHHHHHHH
Confidence 458999999999999999999988778899999999998888774 999999999
Q ss_pred heeeCC
Q 015492 357 ARLVDK 362 (406)
Q Consensus 357 afl~ek 362 (406)
+|+ +|
T Consensus 250 af~-ek 254 (256)
T PRK06143 250 AFL-NR 254 (256)
T ss_pred HHH-hh
Confidence 999 87
No 50
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.3e-51 Score=387.75 Aligned_cols=250 Identities=22% Similarity=0.247 Sum_probs=217.0
Q ss_pred CCCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhh
Q 015492 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (406)
Q Consensus 39 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~ 118 (406)
|.+.+.++++++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.... . ..
T Consensus 1 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~--~--~~ 76 (254)
T PRK08259 1 MSMSVRVERNGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGR--G--NR 76 (254)
T ss_pred CCceEEEEEECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhccc--c--hh
Confidence 4566899999999999999999999999999999999999999999999999999999999999999875321 1 11
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-H
Q 015492 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (406)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a 197 (406)
.... ....+...+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 77 ~~~~--~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a 154 (254)
T PRK08259 77 LHPS--GDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRA 154 (254)
T ss_pred hhhh--hcchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 1100 001111223479999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcC
Q 015492 198 EYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHD 277 (406)
Q Consensus 198 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 277 (406)
++|+++|+.++|+||+++||||+|||++++.+.+.
T Consensus 155 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------- 189 (254)
T PRK08259 155 MDLILTGRPVDADEALAIGLANRVVPKGQARAAAE--------------------------------------------- 189 (254)
T ss_pred HHHHHcCCccCHHHHHHcCCCCEeeChhHHHHHHH---------------------------------------------
Confidence 99999999999999999999999999988754322
Q ss_pred CHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhh
Q 015492 278 TIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRA 357 (406)
Q Consensus 278 ~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~a 357 (406)
+++++|++.||.+++.+|++++.....++++++..|...+...+ .+|++||+++
T Consensus 190 ----------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~----~~d~~egi~a 243 (254)
T PRK08259 190 ----------------------ELAAELAAFPQTCLRADRLSALEQWGLPEEAALANEFAHGLAVL----AAEALEGAAR 243 (254)
T ss_pred ----------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH----hhHHHHHHHH
Confidence 45899999999999999999998877789999999988777665 3999999999
Q ss_pred eeeCCCCCC
Q 015492 358 RLVDKDFAP 366 (406)
Q Consensus 358 fl~ek~r~P 366 (406)
|+ +|+++|
T Consensus 244 f~-~~~~~~ 251 (254)
T PRK08259 244 FA-AGAGRH 251 (254)
T ss_pred HH-hhhccc
Confidence 99 775665
No 51
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=1.2e-50 Score=387.24 Aligned_cols=253 Identities=19% Similarity=0.278 Sum_probs=221.7
Q ss_pred CCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcC-C-CCcccCCChHHHHHhhhcCChh
Q 015492 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGA-G-RAFCSGGDVIALYQLLNEGKFE 117 (406)
Q Consensus 40 ~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~-G-~~F~~G~Dl~~~~~~~~~~~~~ 117 (406)
++.+.++.+++|++||||||+++|+||.+|+.+|.++++.++.|+ +++|||||. | ++||+|+|++++... ..
T Consensus 3 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~---~~-- 76 (261)
T PRK11423 3 MQYVNVVTINKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSG---GR-- 76 (261)
T ss_pred ccceEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhc---cc--
Confidence 457899999999999999999999999999999999999999887 999999996 3 899999999987532 11
Q ss_pred hHHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-
Q 015492 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (406)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~- 196 (406)
....+...+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..
T Consensus 77 ~~~~~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~ 156 (261)
T PRK11423 77 DPLSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHI 156 (261)
T ss_pred cHHHHHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHH
Confidence 1123344556788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCc
Q 015492 197 GEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSH 276 (406)
Q Consensus 197 a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 276 (406)
+++|+++|++++|+||+++||||+|||++++++.+
T Consensus 157 a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a--------------------------------------------- 191 (261)
T PRK11423 157 VKEMFFTASPITAQRALAVGILNHVVEVEELEDFT--------------------------------------------- 191 (261)
T ss_pred HHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999999987765322
Q ss_pred CCHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhc-CCH-HHHHHHHHHHHHHhcccCCCCcHHhh
Q 015492 277 DTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRF-QSL-DQCLVREYRITLNGISKKVSNDFCEG 354 (406)
Q Consensus 277 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~-~~~-~~~l~~e~~~~~~~~~~~~s~d~~eg 354 (406)
.+++++|++.+|.+++.+|++++.... ..+ ...++.|...+..++. ++|++||
T Consensus 192 ----------------------~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~d~~eg 246 (261)
T PRK11423 192 ----------------------LQMAHHISEKAPLAIAVIKEQLRVLGEAHPMNPDEFERIQGLRRAVYD---SEDYQEG 246 (261)
T ss_pred ----------------------HHHHHHHHhcCHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHhC---ChhHHHH
Confidence 256899999999999999999986543 233 5778888888777774 9999999
Q ss_pred hhheeeCCCCCCCCCC
Q 015492 355 IRARLVDKDFAPKWDP 370 (406)
Q Consensus 355 i~afl~ek~r~P~w~~ 370 (406)
+.+|+ +| |+|+|++
T Consensus 247 ~~af~-~k-r~p~~~~ 260 (261)
T PRK11423 247 MNAFL-EK-RKPVFVG 260 (261)
T ss_pred HHHHh-cc-CCCCCCC
Confidence 99999 99 8999974
No 52
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=1.5e-50 Score=389.17 Aligned_cols=257 Identities=18% Similarity=0.242 Sum_probs=219.5
Q ss_pred CCCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCC-CCcccCCChHHHHHhhhcCChh
Q 015492 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFE 117 (406)
Q Consensus 39 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G-~~F~~G~Dl~~~~~~~~~~~~~ 117 (406)
.++.+.++.+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.... .....
T Consensus 11 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~-~~~~~ 89 (273)
T PRK07396 11 EYEDILYKSADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGG-YVDDD 89 (273)
T ss_pred CCcceEEEecCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhccc-ccchh
Confidence 355789999999999999999999999999999999999999999999999999999 6999999999864210 00111
Q ss_pred hHHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-
Q 015492 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (406)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~- 196 (406)
....+ ....++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++.+|++++|..
T Consensus 90 ~~~~~--~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~ 167 (273)
T PRK07396 90 GVPRL--NVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKK 167 (273)
T ss_pred hhhhh--HHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHH
Confidence 11111 133566778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCc
Q 015492 197 GEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSH 276 (406)
Q Consensus 197 a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 276 (406)
+++|+++|+.++|+||+++||||+|||++++.+...
T Consensus 168 a~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~-------------------------------------------- 203 (273)
T PRK07396 168 AREIWFLCRQYDAQEALDMGLVNTVVPLADLEKETV-------------------------------------------- 203 (273)
T ss_pred HHHHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHH--------------------------------------------
Confidence 999999999999999999999999999877653222
Q ss_pred CCHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhh
Q 015492 277 DTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIR 356 (406)
Q Consensus 277 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~ 356 (406)
+++++|+..+|.+++.+|++++.... ..+...+.|...+...+ .++|++||+.
T Consensus 204 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~---~~~d~~egi~ 256 (273)
T PRK07396 204 -----------------------RWCREMLQNSPMALRCLKAALNADCD-GQAGLQELAGNATMLFY---MTEEAQEGRN 256 (273)
T ss_pred -----------------------HHHHHHHhCCHHHHHHHHHHHHhhhc-cHHHHHHHHHHHHHHHh---cChhHHHHHH
Confidence 45899999999999999999987644 45555556666666665 4999999999
Q ss_pred heeeCCCCCCCCCCC
Q 015492 357 ARLVDKDFAPKWDPP 371 (406)
Q Consensus 357 afl~ek~r~P~w~~~ 371 (406)
+|+ +| |+|+|+..
T Consensus 257 af~-~k-r~p~~~~~ 269 (273)
T PRK07396 257 AFN-EK-RQPDFSKF 269 (273)
T ss_pred HHh-CC-CCCCCCCC
Confidence 999 89 89999864
No 53
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.5e-50 Score=381.40 Aligned_cols=246 Identities=23% Similarity=0.324 Sum_probs=218.8
Q ss_pred EEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHH
Q 015492 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNF 122 (406)
Q Consensus 43 v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 122 (406)
|.++.+++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++... . ...+
T Consensus 2 i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~----~---~~~~ 74 (248)
T PRK06072 2 IKVESREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPD----F---AIDL 74 (248)
T ss_pred eEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhh----h---HHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999987531 1 1123
Q ss_pred HHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHHHHHHhh
Q 015492 123 FETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLAL 202 (406)
Q Consensus 123 ~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~~l~l 202 (406)
...++.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..++++++
T Consensus 75 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~~a~~lll 154 (248)
T PRK06072 75 RETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQRFYEILV 154 (248)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhHHHHHHHH
Confidence 34456677888999999999999999999999999999999999999999999999999999999999999966999999
Q ss_pred cCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcCCHHHH
Q 015492 203 TGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHDTIEEI 282 (406)
Q Consensus 203 tG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~i 282 (406)
+|+.++|+||+++||||++ +++.+ .
T Consensus 155 ~g~~~~a~eA~~~Glv~~~---~~~~~--~-------------------------------------------------- 179 (248)
T PRK06072 155 LGGEFTAEEAERWGLLKIS---EDPLS--D-------------------------------------------------- 179 (248)
T ss_pred hCCccCHHHHHHCCCcccc---chHHH--H--------------------------------------------------
Confidence 9999999999999999963 23321 1
Q ss_pred HHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhheeeCC
Q 015492 283 IDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRARLVDK 362 (406)
Q Consensus 283 ~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~afl~ek 362 (406)
+.+++++|+..||.+++.+|++++......+++.++.|...+..++. ++|++||+++|+ +|
T Consensus 180 ---------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~d~~eg~~af~-~k 240 (248)
T PRK06072 180 ---------------AEEMANRISNGPFQSYIAAKRMINLVLYNDLEEFLEYESAIQGYLGK---TEDFKEGISSFK-EK 240 (248)
T ss_pred ---------------HHHHHHHHHhCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhC---ChhHHHHHHHHh-cC
Confidence 12568999999999999999999988778899999999998888774 999999999999 89
Q ss_pred CCCCCCCC
Q 015492 363 DFAPKWDP 370 (406)
Q Consensus 363 ~r~P~w~~ 370 (406)
|+|.|++
T Consensus 241 -r~p~~~~ 247 (248)
T PRK06072 241 -REPKFKG 247 (248)
T ss_pred -CCCCCCC
Confidence 8999975
No 54
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-50 Score=384.81 Aligned_cols=245 Identities=21% Similarity=0.317 Sum_probs=218.9
Q ss_pred CCCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhh
Q 015492 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (406)
Q Consensus 39 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~ 118 (406)
|++.+.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..... . .
T Consensus 1 m~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~--~--~ 76 (249)
T PRK05870 1 MMDPVLLDVDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPG--R--P 76 (249)
T ss_pred CCccEEEEccCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccc--c--c
Confidence 56678999999999999999999999999999999999999999999999999999999999999998764211 1 1
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-H
Q 015492 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (406)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a 197 (406)
.......+..++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 77 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a 156 (249)
T PRK05870 77 AEDGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVA 156 (249)
T ss_pred hHHHHHHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHH
Confidence 123344455667788999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcC
Q 015492 198 EYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHD 277 (406)
Q Consensus 198 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 277 (406)
++|++||+.++|+||+++||||+++ +++.+.+
T Consensus 157 ~~l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a---------------------------------------------- 188 (249)
T PRK05870 157 RAALLFGMRFDAEAAVRHGLALMVA--DDPVAAA---------------------------------------------- 188 (249)
T ss_pred HHHHHhCCccCHHHHHHcCCHHHHH--hhHHHHH----------------------------------------------
Confidence 9999999999999999999999999 4554222
Q ss_pred CHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHhcccCCCCcHHhhhh
Q 015492 278 TIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRF-QSLDQCLVREYRITLNGISKKVSNDFCEGIR 356 (406)
Q Consensus 278 ~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~-~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~ 356 (406)
.++++++++.+|.+++.+|++++.... .+++++++.|...+...+. ++|++||+.
T Consensus 189 ---------------------~~~a~~la~~~~~a~~~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~---~~d~~eg~~ 244 (249)
T PRK05870 189 ---------------------LELAAGPAAAPRELVLATKASMRATASLAQHAAAVEFELGPQAASVQ---SPEFAARLA 244 (249)
T ss_pred ---------------------HHHHHHHHhCCHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhc---ChhHHHHHH
Confidence 245899999999999999999998877 7899999999998888774 999999999
Q ss_pred hee
Q 015492 357 ARL 359 (406)
Q Consensus 357 afl 359 (406)
+|+
T Consensus 245 af~ 247 (249)
T PRK05870 245 AAQ 247 (249)
T ss_pred HHh
Confidence 998
No 55
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.7e-50 Score=383.26 Aligned_cols=255 Identities=20% Similarity=0.247 Sum_probs=223.9
Q ss_pred CCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhH
Q 015492 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119 (406)
Q Consensus 40 ~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (406)
+..+.++.+++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..... ...+..
T Consensus 5 ~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~~ 83 (260)
T PRK07827 5 DTLVRYAVDGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGG-DPYDAA 83 (260)
T ss_pred CcceEEEeeCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhccc-CchhHH
Confidence 3468889999999999999999999999999999999999999999999999999999999999998754210 111122
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHHHHH
Q 015492 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEY 199 (406)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~~ 199 (406)
..+...+.++++.+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++|..+++
T Consensus 84 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~~~~a~~ 163 (260)
T PRK07827 84 VARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLSPRAAAR 163 (260)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhhHHHHHH
Confidence 33455667788899999999999999999999999999999999999999999999999999999999999986544999
Q ss_pred HhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcCCH
Q 015492 200 LALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHDTI 279 (406)
Q Consensus 200 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 279 (406)
++++|+.++|+||+++||||+++++ +.+.
T Consensus 164 l~l~g~~~~a~eA~~~Glv~~v~~~--l~~~------------------------------------------------- 192 (260)
T PRK07827 164 YYLTGEKFGAAEAARIGLVTAAADD--VDAA------------------------------------------------- 192 (260)
T ss_pred HHHhCCccCHHHHHHcCCcccchHH--HHHH-------------------------------------------------
Confidence 9999999999999999999999753 4322
Q ss_pred HHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhhee
Q 015492 280 EEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRARL 359 (406)
Q Consensus 280 ~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~afl 359 (406)
+.+++++|++.+|.+++.+|++++......++..++.|...+..++. ++|++||+++|+
T Consensus 193 ------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~af~ 251 (260)
T PRK07827 193 ------------------VAALLADLRRGSPQGLAESKALTTAAVLAGFDRDAEELTEESARLFV---SDEAREGMTAFL 251 (260)
T ss_pred ------------------HHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---ChhHHHHHHHHh
Confidence 22458999999999999999999998888899999999888888774 999999999999
Q ss_pred eCCCCCCCCC
Q 015492 360 VDKDFAPKWD 369 (406)
Q Consensus 360 ~ek~r~P~w~ 369 (406)
+| |+|.|+
T Consensus 252 -~k-r~p~~~ 259 (260)
T PRK07827 252 -QK-RPPRWA 259 (260)
T ss_pred -cC-CCCCCC
Confidence 88 889996
No 56
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=4e-50 Score=381.46 Aligned_cols=246 Identities=21% Similarity=0.279 Sum_probs=213.2
Q ss_pred EEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHH
Q 015492 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNF 122 (406)
Q Consensus 43 v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 122 (406)
|.++++++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|+.++.. .....+
T Consensus 3 v~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~-------~~~~~~ 74 (251)
T TIGR03189 3 VWLERDGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMP-------DQCAAM 74 (251)
T ss_pred EEEEeeCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCc-------hhHHHH
Confidence 678889999999999997 599999999999999999999999999999999999999999987531 111223
Q ss_pred HHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-HHHHh
Q 015492 123 FETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYLA 201 (406)
Q Consensus 123 ~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l~ 201 (406)
......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++++|++++|.. +++|+
T Consensus 75 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~-~~~~~l~~~vg~~~a~~l~ 153 (251)
T TIGR03189 75 LASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAP-AASCLLPERMGRVAAEDLL 153 (251)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCC-chHHHHHHHhCHHHHHHHH
Confidence 444566788899999999999999999999999999999999999999999999999987 4678999999999 99999
Q ss_pred hcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcCCHHH
Q 015492 202 LTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHDTIEE 281 (406)
Q Consensus 202 ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~ 281 (406)
+||++++|+||+++||||+|+|+.+ . ..+
T Consensus 154 ltg~~~~a~eA~~~Glv~~v~~~~~-~---~a~----------------------------------------------- 182 (251)
T TIGR03189 154 YSGRSIDGAEGARIGLANAVAEDPE-N---AAL----------------------------------------------- 182 (251)
T ss_pred HcCCCCCHHHHHHCCCcceecCcHH-H---HHH-----------------------------------------------
Confidence 9999999999999999999998532 1 111
Q ss_pred HHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHH-HHHHHHHHhcccCCCCcHHhhhhheee
Q 015492 282 IIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLV-REYRITLNGISKKVSNDFCEGIRARLV 360 (406)
Q Consensus 282 i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~-~e~~~~~~~~~~~~s~d~~egi~afl~ 360 (406)
+.++++|+++||.+++.+|++++.....+++..+. .|...+..++ .++|++||+++|+
T Consensus 183 -----------------~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~---~s~d~~eg~~af~- 241 (251)
T TIGR03189 183 -----------------AWFDEHPAKLSASSLRFAVRAARLGMNERVKAKIAEVEALYLEELM---ATHDAVEGLNAFL- 241 (251)
T ss_pred -----------------HHHHHHHHhCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHh---CCHhHHHHHHHHH-
Confidence 01268999999999999999999877777877663 6766666666 4999999999999
Q ss_pred CCCCCCCCCC
Q 015492 361 DKDFAPKWDP 370 (406)
Q Consensus 361 ek~r~P~w~~ 370 (406)
+| |+|.|.+
T Consensus 242 ek-r~p~~~~ 250 (251)
T TIGR03189 242 EK-RPALWED 250 (251)
T ss_pred hc-CCCCCCC
Confidence 99 8999975
No 57
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=4.6e-50 Score=382.73 Aligned_cols=253 Identities=28% Similarity=0.416 Sum_probs=224.0
Q ss_pred CCCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhh
Q 015492 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (406)
Q Consensus 39 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~ 118 (406)
++..+.++.+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++.+.. ......
T Consensus 3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~---~~~~~~ 79 (257)
T COG1024 3 TYETILVEREDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLS---PEDGNA 79 (257)
T ss_pred CCCeeEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhc---ccchhH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999874 111222
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-H
Q 015492 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (406)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a 197 (406)
...++...+.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++++|++|.. +
T Consensus 80 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a 159 (257)
T COG1024 80 AENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRA 159 (257)
T ss_pred HHHHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHH
Confidence 225667777899999999999999999999999999999999999999999999999999999889999999999999 9
Q ss_pred HHHhhcCCCcCHHHHHHcCccceeccC-CChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCc
Q 015492 198 EYLALTGEKLNGVEMIACGLATHYTLN-GRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSH 276 (406)
Q Consensus 198 ~~l~ltG~~i~A~eA~~~GLv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 276 (406)
.+|++||+.++|+||+++|||+++++. +++.+.+.
T Consensus 160 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~-------------------------------------------- 195 (257)
T COG1024 160 KELLLTGEPISAAEALELGLVDEVVPDAEELLERAL-------------------------------------------- 195 (257)
T ss_pred HHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHH--------------------------------------------
Confidence 999999999999999999999999986 46643322
Q ss_pred CCHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhh
Q 015492 277 DTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIR 356 (406)
Q Consensus 277 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~ 356 (406)
+++++++. +|.++..+|+.++......+++.+..|...+...+ .++|++||++
T Consensus 196 -----------------------~~a~~~a~-~~~a~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~d~~eg~~ 248 (257)
T COG1024 196 -----------------------ELARRLAA-PPLALAATKRLVRAALEADLAEALEAEALAFARLF---SSEDFREGVR 248 (257)
T ss_pred -----------------------HHHHHHcc-CHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHh---cChhHHHHHH
Confidence 33566665 99999999999999877679999999999888755 4999999999
Q ss_pred heeeCCCCCCCC
Q 015492 357 ARLVDKDFAPKW 368 (406)
Q Consensus 357 afl~ek~r~P~w 368 (406)
+|+ + |+|.|
T Consensus 249 a~~-~--r~p~~ 257 (257)
T COG1024 249 AFL-E--RKPVF 257 (257)
T ss_pred HHH-c--cCCCC
Confidence 999 5 78887
No 58
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.9e-50 Score=382.72 Aligned_cols=245 Identities=21% Similarity=0.308 Sum_probs=216.0
Q ss_pred CcEEEEEeCc---EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChh
Q 015492 41 DQVLVEGRAK---SRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFE 117 (406)
Q Consensus 41 ~~v~~~~~~~---v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~ 117 (406)
+.|.++++++ |++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..... ..
T Consensus 3 ~~i~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~-~~-- 79 (251)
T PRK06023 3 DHILVERPGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAM-GG-- 79 (251)
T ss_pred ceEEEEeecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccc-cc--
Confidence 4588888774 99999999999999999999999999999999999999999999999999999998754211 11
Q ss_pred hHHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-
Q 015492 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (406)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~- 196 (406)
..+...+..++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|+++++++++|..
T Consensus 80 --~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~ 157 (251)
T PRK06023 80 --TSFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQR 157 (251)
T ss_pred --hhhHHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHH
Confidence 12233445677889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCc
Q 015492 197 GEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSH 276 (406)
Q Consensus 197 a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 276 (406)
+++++++|+.++|+||+++||||+|||.+++.+...
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------- 193 (251)
T PRK06023 158 AFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETL-------------------------------------------- 193 (251)
T ss_pred HHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHH--------------------------------------------
Confidence 999999999999999999999999999877653222
Q ss_pred CCHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhh
Q 015492 277 DTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIR 356 (406)
Q Consensus 277 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~ 356 (406)
+++++|++.||.+++.+|++++... ..+...+..|...+..++. ++|++||++
T Consensus 194 -----------------------~~a~~l~~~~~~a~~~~K~~l~~~~-~~l~~~~~~e~~~~~~~~~---~~~~~e~~~ 246 (251)
T PRK06023 194 -----------------------KAAEELAAKPPQALQIARDLMRGPR-EDILARIDEEAKHFAARLK---SAEARAAFE 246 (251)
T ss_pred -----------------------HHHHHHHhCCHHHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHhC---CHHHHHHHH
Confidence 4589999999999999999998764 4688888888888777774 999999999
Q ss_pred heeeCC
Q 015492 357 ARLVDK 362 (406)
Q Consensus 357 afl~ek 362 (406)
+|+ +|
T Consensus 247 af~-e~ 251 (251)
T PRK06023 247 AFM-RR 251 (251)
T ss_pred HHh-cC
Confidence 998 54
No 59
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=6.8e-50 Score=382.82 Aligned_cols=253 Identities=22% Similarity=0.290 Sum_probs=220.8
Q ss_pred CCcEEEEE-eCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhh
Q 015492 40 QDQVLVEG-RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (406)
Q Consensus 40 ~~~v~~~~-~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~ 118 (406)
.+.+.++. +++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..... .. .
T Consensus 8 ~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~--~ 84 (265)
T PLN02888 8 ENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFK-GD--V 84 (265)
T ss_pred CCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhcc-ch--h
Confidence 45688885 78999999999999999999999999999999999999999999999999999999998653211 11 1
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-H
Q 015492 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (406)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a 197 (406)
. .....++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 85 -~---~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 160 (265)
T PLN02888 85 -K---DVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRA 160 (265)
T ss_pred -h---HHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHH
Confidence 1 1123456678899999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcC
Q 015492 198 EYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHD 277 (406)
Q Consensus 198 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 277 (406)
++|++||+.++|+||+++||||+|||++++.+.+.
T Consensus 161 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------- 195 (265)
T PLN02888 161 REVSLTAMPLTAETAERWGLVNHVVEESELLKKAR--------------------------------------------- 195 (265)
T ss_pred HHHHHhCCccCHHHHHHcCCccEeeChHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999999877653222
Q ss_pred CHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhh
Q 015492 278 TIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRA 357 (406)
Q Consensus 278 ~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~a 357 (406)
+++++|++.+|.+++.+|++++.....+++.++..|...+..++. ..++|++||+++
T Consensus 196 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~-~~~~d~~e~~~a 252 (265)
T PLN02888 196 ----------------------EVAEAIIKNNQGMVLRYKSVINDGLKLDLGHALQLEKERAHDYYN-GMTKEQFQKMQE 252 (265)
T ss_pred ----------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc-cCCHHHHHHHHH
Confidence 458999999999999999999988888899999999887766541 138999999999
Q ss_pred eeeCCCCCCCCC
Q 015492 358 RLVDKDFAPKWD 369 (406)
Q Consensus 358 fl~ek~r~P~w~ 369 (406)
|+ +| |+|+-.
T Consensus 253 f~-ek-r~~~~~ 262 (265)
T PLN02888 253 FI-AG-RSSKKP 262 (265)
T ss_pred HH-hc-CCCCCC
Confidence 99 88 777644
No 60
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.2e-50 Score=378.55 Aligned_cols=240 Identities=22% Similarity=0.324 Sum_probs=213.9
Q ss_pred EEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHH
Q 015492 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNF 122 (406)
Q Consensus 43 v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 122 (406)
+.++++++|++||||||+++|+||.+|+.+|.++++.++.+ ++++|||||.|++||+|+|+++... ...+
T Consensus 2 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~---------~~~~ 71 (243)
T PRK07854 2 IGVTRDGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY---------ADDF 71 (243)
T ss_pred ceEEEeCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh---------HHHH
Confidence 56788999999999999999999999999999999999865 8999999999999999999985211 1223
Q ss_pred HHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-HHHHh
Q 015492 123 FETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYLA 201 (406)
Q Consensus 123 ~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l~ 201 (406)
...+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +++|+
T Consensus 72 ~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ 151 (243)
T PRK07854 72 PDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAML 151 (243)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHH
Confidence 34456678888999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred hcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcCCHHH
Q 015492 202 LTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHDTIEE 281 (406)
Q Consensus 202 ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~ 281 (406)
+||++++|+||+++||||+|++ +. ..
T Consensus 152 ltg~~~~a~eA~~~Glv~~v~~---~~---~a------------------------------------------------ 177 (243)
T PRK07854 152 LGAEKLTAEQALATGMANRIGT---LA---DA------------------------------------------------ 177 (243)
T ss_pred HcCCCcCHHHHHHCCCcccccC---HH---HH------------------------------------------------
Confidence 9999999999999999999964 21 11
Q ss_pred HHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhheeeC
Q 015492 282 IIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRARLVD 361 (406)
Q Consensus 282 i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~afl~e 361 (406)
.+++++|++.||.+++.+|++++.. ..++++++.|...+..++. ++|++||+++|+ +
T Consensus 178 -----------------~~~a~~l~~~~~~a~~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~---~~d~~eg~~af~-~ 234 (243)
T PRK07854 178 -----------------QAWAAEIAGLAPLALQHAKRVLNDD--GAIEEAWPAHKELFDKAWA---SQDAIEAQVARI-E 234 (243)
T ss_pred -----------------HHHHHHHHhCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhc---CchHHHHHHHHh-C
Confidence 1458999999999999999999875 5689999999888887774 999999999999 8
Q ss_pred CCCCCCCCC
Q 015492 362 KDFAPKWDP 370 (406)
Q Consensus 362 k~r~P~w~~ 370 (406)
| |+|.|++
T Consensus 235 k-r~p~~~~ 242 (243)
T PRK07854 235 K-RPPKFQG 242 (243)
T ss_pred C-CCCCCCC
Confidence 9 8999975
No 61
>PLN02921 naphthoate synthase
Probab=100.00 E-value=2.1e-49 Score=388.46 Aligned_cols=256 Identities=20% Similarity=0.239 Sum_probs=216.6
Q ss_pred CCCcEEEEE--eCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCC-CCcccCCChHHHHHhhhcCC
Q 015492 39 LQDQVLVEG--RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGK 115 (406)
Q Consensus 39 ~~~~v~~~~--~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G-~~F~~G~Dl~~~~~~~~~~~ 115 (406)
.++.|.+++ +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++... ....
T Consensus 63 ~~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~-~~~~ 141 (327)
T PLN02921 63 EFTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKD-GYVG 141 (327)
T ss_pred CCceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcc-cccc
Confidence 566788887 589999999999999999999999999999999999999999999999 899999999976431 0011
Q ss_pred hhhHHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchH
Q 015492 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY 195 (406)
Q Consensus 116 ~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~ 195 (406)
......+ ....++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus 142 ~~~~~~~--~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~ 219 (327)
T PLN02921 142 PDDAGRL--NVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQ 219 (327)
T ss_pred hhHHHHH--HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCH
Confidence 1111111 12346678889999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhc
Q 015492 196 L-GEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCF 274 (406)
Q Consensus 196 ~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f 274 (406)
. +++|+++|+.++|+||+++||||+|||++++.+...
T Consensus 220 ~~A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~------------------------------------------ 257 (327)
T PLN02921 220 KKAREMWFLARFYTASEALKMGLVNTVVPLDELEGETV------------------------------------------ 257 (327)
T ss_pred HHHHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHH------------------------------------------
Confidence 9 999999999999999999999999999887753222
Q ss_pred CcCCHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhh
Q 015492 275 SHDTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEG 354 (406)
Q Consensus 275 ~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~eg 354 (406)
+++++|++++|.+++.+|++++..... .......+...+..++ .++|++||
T Consensus 258 -------------------------~~a~~la~~~p~al~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~---~s~d~~eg 308 (327)
T PLN02921 258 -------------------------KWCREILRNSPTAIRVLKSALNAADDG-HAGLQELGGNATLLFY---GSEEGNEG 308 (327)
T ss_pred -------------------------HHHHHHHccCHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHh---cCHHHHHH
Confidence 458999999999999999999976543 3333333345555555 49999999
Q ss_pred hhheeeCCCCCCCCCC
Q 015492 355 IRARLVDKDFAPKWDP 370 (406)
Q Consensus 355 i~afl~ek~r~P~w~~ 370 (406)
+.+|+ +| |+|.|+.
T Consensus 309 i~Af~-ek-r~p~f~~ 322 (327)
T PLN02921 309 RTAYL-EG-RAPDFSK 322 (327)
T ss_pred HHHHh-cc-CCCCCCC
Confidence 99999 99 8999975
No 62
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=5.7e-50 Score=379.49 Aligned_cols=244 Identities=30% Similarity=0.479 Sum_probs=227.5
Q ss_pred EEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHH
Q 015492 44 LVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFF 123 (406)
Q Consensus 44 ~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~ 123 (406)
.++.+|+|++|+||||++.|++|.+++.+|.++|+.++.|+++++||++|.|++||+|+|++++... +......+.
T Consensus 1 ~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~----~~~~~~~~~ 76 (245)
T PF00378_consen 1 KYEIEDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNS----DEEEAREFF 76 (245)
T ss_dssp EEEEETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHH----HHHHHHHHH
T ss_pred CEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhcc----ccccccccc
Confidence 4789999999999999999999999999999999999999999999999999999999999998874 345567788
Q ss_pred HHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-HHHHhh
Q 015492 124 ETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYLAL 202 (406)
Q Consensus 124 ~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l~l 202 (406)
..++.++..+..+||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|.. ++++++
T Consensus 77 ~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l 156 (245)
T PF00378_consen 77 RRFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLL 156 (245)
T ss_dssp HHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeeccccccccc
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred cCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcCCHHHH
Q 015492 203 TGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHDTIEEI 282 (406)
Q Consensus 203 tG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~i 282 (406)
+|+.++|+||+++||||+|+|++++.+.+.
T Consensus 157 ~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~-------------------------------------------------- 186 (245)
T PF00378_consen 157 TGEPISAEEALELGLVDEVVPDEELDEEAL-------------------------------------------------- 186 (245)
T ss_dssp HTCEEEHHHHHHTTSSSEEESGGGHHHHHH--------------------------------------------------
T ss_pred ccccchhHHHHhhcceeEEcCchhhhHHHH--------------------------------------------------
Confidence 999999999999999999999988754332
Q ss_pred HHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhheeeCC
Q 015492 283 IDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRARLVDK 362 (406)
Q Consensus 283 ~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~afl~ek 362 (406)
+++++++..+|.+++.+|+.+++.....+++.+..|...+...+. ++|++||+++|+ ||
T Consensus 187 -----------------~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~e~~~~f~-eK 245 (245)
T PF00378_consen 187 -----------------ELAKRLAAKPPSALRATKKALNRALEQSLEEALEFEQDLFAECFK---SEDFQEGIAAFL-EK 245 (245)
T ss_dssp -----------------HHHHHHHTSCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHT---SHHHHHHHHHHH-TT
T ss_pred -----------------HHHHHHhcCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcC---CHHHHHHHHHHh-Cc
Confidence 458999999999999999999998888899999999999998885 999999999999 76
No 63
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.5e-50 Score=388.70 Aligned_cols=257 Identities=20% Similarity=0.225 Sum_probs=214.8
Q ss_pred CCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHH-HHH---hh-hcC
Q 015492 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIA-LYQ---LL-NEG 114 (406)
Q Consensus 40 ~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~-~~~---~~-~~~ 114 (406)
++.+.++.+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|+++ +.. .. ...
T Consensus 4 ~~~v~~~~~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~ 83 (298)
T PRK12478 4 FQTLLYTTAGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDG 83 (298)
T ss_pred ceEEEEeccCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhccccc
Confidence 3468899999999999999999999999999999999999999999999999999999999999985 211 00 000
Q ss_pred ChhhHHHH---HH---HHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccc-cccCCCchHH
Q 015492 115 KFEDFKNF---FE---TLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQM-GFHPDAGASF 187 (406)
Q Consensus 115 ~~~~~~~~---~~---~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~-Gl~P~~g~~~ 187 (406)
.......+ .. ....++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++ |+++ ++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~--~~~~ 161 (298)
T PRK12478 84 RWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL--TGMW 161 (298)
T ss_pred ccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc--hhHH
Confidence 00111111 01 11234566889999999999999999999999999999999999999999997 8875 3333
Q ss_pred HHhhcchHH-HHHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHH
Q 015492 188 YLSHLPGYL-GEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRK 266 (406)
Q Consensus 188 ~l~r~~g~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (406)
.+++|.. +++|++||++++|+||+++||||+|||++++.+.+.
T Consensus 162 --~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~---------------------------------- 205 (298)
T PRK12478 162 --LYRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVA---------------------------------- 205 (298)
T ss_pred --HHHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHH----------------------------------
Confidence 2568998 999999999999999999999999999988764332
Q ss_pred HHHHHHhcCcCCHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHhccc
Q 015492 267 IETIDKCFSHDTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRF-QSLDQCLVREYRITLNGISK 345 (406)
Q Consensus 267 ~~~i~~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~-~~~~~~l~~e~~~~~~~~~~ 345 (406)
+++++|+..||.+++.+|++++.... .++++++..|...+..+..
T Consensus 206 ---------------------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~- 251 (298)
T PRK12478 206 ---------------------------------EVATELARIPLSQLQAQKLIVNQAYENMGLASTQTLGGILDGLMRN- 251 (298)
T ss_pred ---------------------------------HHHHHHHhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhc-
Confidence 45899999999999999999998766 4699999999999888774
Q ss_pred CCCCcHH--------hhhhheeeCCCCCCCCCCCC
Q 015492 346 KVSNDFC--------EGIRARLVDKDFAPKWDPPS 372 (406)
Q Consensus 346 ~~s~d~~--------egi~afl~ek~r~P~w~~~~ 372 (406)
++|++ ||++||+ +| |+|+|...+
T Consensus 252 --s~d~~e~~~~~~~egv~Af~-ek-R~p~f~~~~ 282 (298)
T PRK12478 252 --TPDALEFIRTAETQGVRAAV-ER-RDGPFGDYS 282 (298)
T ss_pred --ChhHHHHHHHHHHHHHHHHH-Hh-cCCcccccC
Confidence 89997 5999999 99 999998764
No 64
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-49 Score=375.92 Aligned_cols=242 Identities=18% Similarity=0.172 Sum_probs=212.1
Q ss_pred EEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHH
Q 015492 46 EGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFET 125 (406)
Q Consensus 46 ~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~ 125 (406)
+++++|++||||||++ |+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++... ........+...
T Consensus 7 ~~~~~v~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~---~~~~~~~~~~~~ 82 (249)
T PRK07938 7 TPEPGIAEVTVDYPPV-NALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQAT---PGFTALIDANRG 82 (249)
T ss_pred ccCCCEEEEEECCCCc-ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhc---cchhHHHHHHHH
Confidence 4578999999999975 999999999999999999999999999999999999999999987531 111222223344
Q ss_pred HHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-HHHHhhcC
Q 015492 126 LYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYLALTG 204 (406)
Q Consensus 126 ~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l~ltG 204 (406)
...++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++ |++++|++++|.. +++|+++|
T Consensus 83 ~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~ltg 159 (249)
T PRK07938 83 CFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTA 159 (249)
T ss_pred HHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHhC
Confidence 4567788899999999999999999999999999999999999999999999985 5677899999999 99999999
Q ss_pred CCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcCCHHHHHH
Q 015492 205 EKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHDTIEEIID 284 (406)
Q Consensus 205 ~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~i~~ 284 (406)
+.++|+||+++||||+|||++++.+.+.
T Consensus 160 ~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------------- 187 (249)
T PRK07938 160 ATITAAELHHFGSVEEVVPRDQLDEAAL---------------------------------------------------- 187 (249)
T ss_pred CcCCHHHHHHCCCccEEeCHHHHHHHHH----------------------------------------------------
Confidence 9999999999999999999877653322
Q ss_pred HHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhheeeCCCC
Q 015492 285 ALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRARLVDKDF 364 (406)
Q Consensus 285 ~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~afl~ek~r 364 (406)
+++++|+.++|.+++.+|++++.....++++.++.|...+..++. ++|++||+++|+ +| |
T Consensus 188 ---------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~d~~eg~~af~-ek-r 247 (249)
T PRK07938 188 ---------------EVARKIAAKDTRVIRAAKEALNGIDPQDVERSYRWEQGFTFELNL---AGVSDEHRDAFV-EK-R 247 (249)
T ss_pred ---------------HHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhc---CccHHHHHHHHH-hc-C
Confidence 458999999999999999999988777899999999888877764 999999999999 88 7
Q ss_pred CC
Q 015492 365 AP 366 (406)
Q Consensus 365 ~P 366 (406)
+|
T Consensus 248 ~p 249 (249)
T PRK07938 248 KA 249 (249)
T ss_pred CC
Confidence 76
No 65
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=4.3e-49 Score=379.54 Aligned_cols=249 Identities=17% Similarity=0.205 Sum_probs=218.0
Q ss_pred CCcEEEEE-eCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCC--CCcccCCChHHHHHhhhcCCh
Q 015492 40 QDQVLVEG-RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG--RAFCSGGDVIALYQLLNEGKF 116 (406)
Q Consensus 40 ~~~v~~~~-~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G--~~F~~G~Dl~~~~~~~~~~~~ 116 (406)
+..|.+++ +++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++... ....
T Consensus 10 ~~~i~~~~~~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~--~~~~ 86 (278)
T PLN03214 10 TPGVRVDRRPGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAP--KTSA 86 (278)
T ss_pred CCceEEEEcCCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhcc--ccch
Confidence 45788988 6999999999985 6999999999999999999999999999999998 699999999987531 1111
Q ss_pred hhHHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccc-cCCCchHHHHhhcchH
Q 015492 117 EDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGF-HPDAGASFYLSHLPGY 195 (406)
Q Consensus 117 ~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl-~P~~g~~~~l~r~~g~ 195 (406)
.....+......++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|+ +|++|++++|++++|.
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~ 166 (278)
T PLN03214 87 ARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDR 166 (278)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCH
Confidence 112233333456778899999999999999999999999999999999999999999999999 5999999999999999
Q ss_pred H-HHHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhc
Q 015492 196 L-GEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCF 274 (406)
Q Consensus 196 ~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f 274 (406)
. +++|++||+.++|+||+++||||+|||++++.+.+
T Consensus 167 ~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a------------------------------------------- 203 (278)
T PLN03214 167 KVAESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAA------------------------------------------- 203 (278)
T ss_pred HHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHH-------------------------------------------
Confidence 9 99999999999999999999999999987765322
Q ss_pred CcCCHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhh
Q 015492 275 SHDTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEG 354 (406)
Q Consensus 275 ~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~eg 354 (406)
.+++++|++.+|.+++.+|++++......++++++.|...+...+ .++|++||
T Consensus 204 ------------------------~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~---~s~d~~eg 256 (278)
T PLN03214 204 ------------------------ASAMERALKLPSAARAATKALLREEFSAAWEAYYEEEAKGGWKML---SEPSIIKA 256 (278)
T ss_pred ------------------------HHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh---CCHHHHHH
Confidence 245899999999999999999998877789999999988887776 49999999
Q ss_pred hhheeeCC
Q 015492 355 IRARLVDK 362 (406)
Q Consensus 355 i~afl~ek 362 (406)
+++|+ +|
T Consensus 257 i~afl-ek 263 (278)
T PLN03214 257 LGGVM-ER 263 (278)
T ss_pred HHHHH-HH
Confidence 99999 76
No 66
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=7.8e-49 Score=373.68 Aligned_cols=251 Identities=16% Similarity=0.171 Sum_probs=216.4
Q ss_pred CCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhH
Q 015492 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119 (406)
Q Consensus 40 ~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (406)
++.+.++++++|++|+||||+++|++|.+|+.+|.++++.++ +++++|||||.|++||+|+|++++..... .....
T Consensus 3 ~~~i~~~~~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~--~~~~~ 78 (255)
T PRK07112 3 YQTIRVRQQGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPD--AGRAD 78 (255)
T ss_pred CceEEEEeeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccc--cchhh
Confidence 456899999999999999999999999999999999999987 36999999999999999999998754211 11111
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-HH
Q 015492 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GE 198 (406)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~ 198 (406)
......+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++| +.+|++++|.. ++
T Consensus 79 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~a~ 157 (255)
T PRK07112 79 LIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQKAH 157 (255)
T ss_pred hhhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHHHH
Confidence 11233445678889999999999999999999999999999999999999999999999999865 56799999999 99
Q ss_pred HHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcCC
Q 015492 199 YLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHDT 278 (406)
Q Consensus 199 ~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 278 (406)
+|+++|+.++|+||+++||||+|||+++.. .
T Consensus 158 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~--~----------------------------------------------- 188 (255)
T PRK07112 158 YMTLMTQPVTAQQAFSWGLVDAYGANSDTL--L----------------------------------------------- 188 (255)
T ss_pred HHHHhCCcccHHHHHHcCCCceecCcHHHH--H-----------------------------------------------
Confidence 999999999999999999999999975421 1
Q ss_pred HHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhhe
Q 015492 279 IEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRAR 358 (406)
Q Consensus 279 ~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~af 358 (406)
.++++++++.+|.+++.+|++++.. ...+.+.++.|......++. ++|++||+.+|
T Consensus 189 --------------------~~~a~~l~~~~p~a~~~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~---~~~~~eg~~af 244 (255)
T PRK07112 189 --------------------RKHLLRLRCLNKAAVARYKSYASTL-DDTVAAARPAALAANIEMFA---DPENLRKIARY 244 (255)
T ss_pred --------------------HHHHHHHHhCCHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHc---ChHHHHHHHHH
Confidence 1458899999999999999999875 45688999999888877774 99999999999
Q ss_pred eeCCCCCCCCCC
Q 015492 359 LVDKDFAPKWDP 370 (406)
Q Consensus 359 l~ek~r~P~w~~ 370 (406)
+ +| |+|.|..
T Consensus 245 ~-~k-r~p~~~~ 254 (255)
T PRK07112 245 V-ET-GKFPWEA 254 (255)
T ss_pred H-cC-CCCCCCC
Confidence 9 89 8999974
No 67
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=9.6e-49 Score=381.34 Aligned_cols=259 Identities=20% Similarity=0.230 Sum_probs=216.8
Q ss_pred CCcEEEEE--eCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCC-------CCcccCCChHHHHHh
Q 015492 40 QDQVLVEG--RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-------RAFCSGGDVIALYQL 110 (406)
Q Consensus 40 ~~~v~~~~--~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G-------~~F~~G~Dl~~~~~~ 110 (406)
+..+.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++...
T Consensus 22 ~~~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~ 101 (302)
T PRK08321 22 FTDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRD 101 (302)
T ss_pred ceeEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccc
Confidence 33588888 899999999999999999999999999999999999999999999998 599999999875321
Q ss_pred h---hcCCh-h--hHHHHH-HHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEe-CCeeEecccccccccCC
Q 015492 111 L---NEGKF-E--DFKNFF-ETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVT-DKTVFSNPETQMGFHPD 182 (406)
Q Consensus 111 ~---~~~~~-~--~~~~~~-~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~-~~a~f~~pe~~~Gl~P~ 182 (406)
. ..... . ...... .....+...+..+||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~ 181 (302)
T PRK08321 102 GYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDG 181 (302)
T ss_pred cccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCC
Confidence 0 00000 0 001111 112345667889999999999999999999999999999999 69999999999999999
Q ss_pred CchHHHHhhcchHH-HHHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChh
Q 015492 183 AGASFYLSHLPGYL-GEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRE 261 (406)
Q Consensus 183 ~g~~~~l~r~~g~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (406)
+|++++|++++|.. +++|++||+.++|+||+++||||++||++++.+.+.
T Consensus 182 ~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~----------------------------- 232 (302)
T PRK08321 182 GYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEAL----------------------------- 232 (302)
T ss_pred chHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHHHHHHH-----------------------------
Confidence 99999999999999 999999999999999999999999999887753322
Q ss_pred HHHHHHHHHHHhcCcCCHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 015492 262 SVLRKIETIDKCFSHDTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLN 341 (406)
Q Consensus 262 ~~~~~~~~i~~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~ 341 (406)
+++++|++.+|.+++.+|++++.... ........|...+..
T Consensus 233 --------------------------------------~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~ 273 (302)
T PRK08321 233 --------------------------------------EWAREINGKSPTAMRMLKYAFNLTDD-GLVGQQLFAGEATRL 273 (302)
T ss_pred --------------------------------------HHHHHHHhCCHHHHHHHHHHHHhhhc-ccHHHHHHHHHHHHH
Confidence 45899999999999999999987654 344445567777776
Q ss_pred hcccCCCCcHHhhhhheeeCCCCCCCCCCC
Q 015492 342 GISKKVSNDFCEGIRARLVDKDFAPKWDPP 371 (406)
Q Consensus 342 ~~~~~~s~d~~egi~afl~ek~r~P~w~~~ 371 (406)
++ .++|++||+.+|+ +| |+|.|...
T Consensus 274 ~~---~~~d~~egi~af~-ek-r~p~~~~~ 298 (302)
T PRK08321 274 AY---MTDEAQEGRDAFL-EK-RDPDWSDF 298 (302)
T ss_pred Hh---cCHHHHHHHHHHh-cc-CCCCCCCC
Confidence 66 4999999999999 89 89999753
No 68
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.5e-48 Score=368.89 Aligned_cols=244 Identities=18% Similarity=0.244 Sum_probs=219.5
Q ss_pred CCCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhh
Q 015492 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (406)
Q Consensus 39 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~ 118 (406)
|+..+.++.+++|++|+||||++.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.... ...
T Consensus 3 ~~~~~~~~~~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~---~~~- 78 (249)
T PRK07110 3 MKVVELREVEEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQ---TGK- 78 (249)
T ss_pred CCceEEEEeeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhcc---chh-
Confidence 6678899999999999999999999999999999999999999999999999999999999999999875421 111
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-H
Q 015492 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (406)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a 197 (406)
..+. . ..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 79 -~~~~-~-~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a 155 (249)
T PRK07110 79 -GTFT-E-ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALG 155 (249)
T ss_pred -hhHh-h-HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHH
Confidence 1122 2 4677889999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcC
Q 015492 198 EYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHD 277 (406)
Q Consensus 198 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 277 (406)
+++++||+.++|+||+++||||+||+++++.+.+.
T Consensus 156 ~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------- 190 (249)
T PRK07110 156 QEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKAL--------------------------------------------- 190 (249)
T ss_pred HHHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999999877653222
Q ss_pred CHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhh
Q 015492 278 TIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRA 357 (406)
Q Consensus 278 ~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~a 357 (406)
++++++++.||.+++.+|+.++......+++.++.|...+...+. ++|++||+++
T Consensus 191 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~~~~egi~~ 245 (249)
T PRK07110 191 ----------------------ELARSLAEKPRHSLVLLKDHLVADRRRRLPEVIEQEVAMHEKTFH---QPEVKRRIES 245 (249)
T ss_pred ----------------------HHHHHHHhCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhC---CHhHHHHHHH
Confidence 458999999999999999999998888999999999999888884 9999999987
Q ss_pred ee
Q 015492 358 RL 359 (406)
Q Consensus 358 fl 359 (406)
.-
T Consensus 246 ~~ 247 (249)
T PRK07110 246 LY 247 (249)
T ss_pred hc
Confidence 53
No 69
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.9e-48 Score=366.55 Aligned_cols=247 Identities=20% Similarity=0.278 Sum_probs=214.3
Q ss_pred CCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhH
Q 015492 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119 (406)
Q Consensus 40 ~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (406)
++.+.++.+++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++... .. ...
T Consensus 3 ~~~v~~~~~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~---~~-~~~ 78 (258)
T PRK06190 3 EPILLVETHDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGD---GS-AYG 78 (258)
T ss_pred CceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcc---cc-hhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999987532 11 111
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-HH
Q 015492 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GE 198 (406)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~ 198 (406)
. ...+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. ++
T Consensus 79 -~-~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~ 156 (258)
T PRK06190 79 -A-QDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRAR 156 (258)
T ss_pred -H-HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHH
Confidence 1 22345677889999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcCC
Q 015492 199 YLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHDT 278 (406)
Q Consensus 199 ~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 278 (406)
+|++||++++|+||+++||||+++|++++.+.+.
T Consensus 157 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~---------------------------------------------- 190 (258)
T PRK06190 157 RMSLTGDFLDAADALRAGLVTEVVPHDELLPRAR---------------------------------------------- 190 (258)
T ss_pred HHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHH----------------------------------------------
Confidence 9999999999999999999999999887653222
Q ss_pred HHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhhe
Q 015492 279 IEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRAR 358 (406)
Q Consensus 279 ~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~af 358 (406)
+++++|+.+||.+++.+|++++.....+++++++.|...+...+.+...+...+-..+|
T Consensus 191 ---------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~ 249 (258)
T PRK06190 191 ---------------------RLAASIAGNNPAAVRALKASYDDGAAAQTGDALALEAEAARAHNRSVSPDGIAARREAV 249 (258)
T ss_pred ---------------------HHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 45899999999999999999998888899999999999988887522113344444444
Q ss_pred e
Q 015492 359 L 359 (406)
Q Consensus 359 l 359 (406)
+
T Consensus 250 ~ 250 (258)
T PRK06190 250 M 250 (258)
T ss_pred H
Confidence 4
No 70
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=8.9e-47 Score=389.63 Aligned_cols=254 Identities=13% Similarity=0.070 Sum_probs=222.7
Q ss_pred EEEEEeCcEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHHc-CCCcEEEEEEcCCCC-cccCCChHHH
Q 015492 43 VLVEGRAKSRAAILNRPSNL-------------NALNTSMVGRLKRLYESWEE-NPDIGFVLMKGAGRA-FCSGGDVIAL 107 (406)
Q Consensus 43 v~~~~~~~v~~Itlnrp~~~-------------Nal~~~~~~eL~~~l~~~~~-d~~v~~VVltg~G~~-F~~G~Dl~~~ 107 (406)
+.++++++|++||||||+++ |+||.+|+.+|.+++..++. |+++++|||||.|+. ||+|+|++..
T Consensus 260 v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~ 339 (546)
T TIGR03222 260 VAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLE 339 (546)
T ss_pred EEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCcccc
Confidence 45567899999999999999 99999999999999999984 599999999999987 9999999832
Q ss_pred HHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEEEE-cccccccc-chhhccCCeEEE-------eCCeeEeccccccc
Q 015492 108 YQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAIL-DGITMGCG-AGISLQGMYRVV-------TDKTVFSNPETQMG 178 (406)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav-nG~a~GgG-~~lal~cD~ria-------~~~a~f~~pe~~~G 178 (406)
.. .+...........+.++..+..++|||||+| ||+|+||| ++|+++||+||+ +++++|++||+++|
T Consensus 340 ~~----~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~lG 415 (546)
T TIGR03222 340 AH----KDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNFG 415 (546)
T ss_pred cc----ccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCccccc
Confidence 11 1111112223334557788999999999999 89999999 999999999999 89999999999999
Q ss_pred ccCCCchHHHHhhcc-hHH-H--HHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcc
Q 015492 179 FHPDAGASFYLSHLP-GYL-G--EYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGD 254 (406)
Q Consensus 179 l~P~~g~~~~l~r~~-g~~-a--~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 254 (406)
++|++|++++|++++ |.. + +++++||+.++|+||+++|||++|+|++++.+...
T Consensus 416 l~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~---------------------- 473 (546)
T TIGR03222 416 LYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWEDEIR---------------------- 473 (546)
T ss_pred cCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHHHHH----------------------
Confidence 999999999999998 887 7 56999999999999999999999999988754322
Q ss_pred cccCChhHHHHHHHHHHHhcCcCCHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHH-HH
Q 015492 255 LVSLDRESVLRKIETIDKCFSHDTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQC-LV 333 (406)
Q Consensus 255 ~~~~~~~~~~~~~~~i~~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~-l~ 333 (406)
+++++|+.+||.+++.+|++++.....+++++ +.
T Consensus 474 ---------------------------------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~ 508 (546)
T TIGR03222 474 ---------------------------------------------IALEERASFSPDALTGLEANLRFAGPETMETRIFG 508 (546)
T ss_pred ---------------------------------------------HHHHHHHhcCHHHHHHHHHHHhhcCCcChhhhHHH
Confidence 45899999999999999999999988899999 99
Q ss_pred HHHHHHHHhcccCCCCcHHh---hhhheeeCCCCCCCCCCCC
Q 015492 334 REYRITLNGISKKVSNDFCE---GIRARLVDKDFAPKWDPPS 372 (406)
Q Consensus 334 ~e~~~~~~~~~~~~s~d~~e---gi~afl~ek~r~P~w~~~~ 372 (406)
.|...+..++. ++|.+| |+++|+ || |+|+|+-++
T Consensus 509 ~e~~~~~~~~~---~~d~~e~~~g~~af~-ek-r~p~f~~~~ 545 (546)
T TIGR03222 509 RLTAWQNWIFN---RPNAVGENGALKVYG-SG-KKAQFDMER 545 (546)
T ss_pred HHHHHHHHHhc---CCcccchhhHHHHHc-cC-CCCCCCccC
Confidence 99999988885 999999 999999 99 899998654
No 71
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=1.7e-46 Score=388.75 Aligned_cols=258 Identities=14% Similarity=0.051 Sum_probs=223.1
Q ss_pred CCCcEEE--EEeCcEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHHc-CCCcEEEEEEcCC-CCcccC
Q 015492 39 LQDQVLV--EGRAKSRAAILNRPSNL-------------NALNTSMVGRLKRLYESWEE-NPDIGFVLMKGAG-RAFCSG 101 (406)
Q Consensus 39 ~~~~v~~--~~~~~v~~Itlnrp~~~-------------Nal~~~~~~eL~~~l~~~~~-d~~v~~VVltg~G-~~F~~G 101 (406)
.|+++.+ +++++|++||||||+++ |+||.+|+.+|.++++.++. |+++|+|||||.| ++||+|
T Consensus 258 ~~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG 337 (550)
T PRK08184 258 RYRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLA 337 (550)
T ss_pred eeEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeC
Confidence 4444544 45689999999999988 68999999999999999986 7899999999999 599999
Q ss_pred CChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEEEEc-ccccccc-chhhccCCeEEEe-------CCeeEec
Q 015492 102 GDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILD-GITMGCG-AGISLQGMYRVVT-------DKTVFSN 172 (406)
Q Consensus 102 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavn-G~a~GgG-~~lal~cD~ria~-------~~a~f~~ 172 (406)
+|++.+.. .+.............++.++..+||||||+|| |+|+||| ++|+++||+|||+ ++++|++
T Consensus 338 ~Dl~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~ 413 (550)
T PRK08184 338 ADATLLAH----KDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITL 413 (550)
T ss_pred CChhhhcc----cchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEEC
Confidence 99873211 11111122334445677889999999999997 9999999 9999999999999 9999999
Q ss_pred ccccccccCCCchHHHHhhc-chHH-HHHH--hhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHH
Q 015492 173 PETQMGFHPDAGASFYLSHL-PGYL-GEYL--ALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETS 248 (406)
Q Consensus 173 pe~~~Gl~P~~g~~~~l~r~-~g~~-a~~l--~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~ 248 (406)
||+++|++|++|++++|+++ +|.. |+++ ++||+.++|+||+++||||+|||++++++.+.
T Consensus 414 pe~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~---------------- 477 (550)
T PRK08184 414 SALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWEDEVR---------------- 477 (550)
T ss_pred ccccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHHHHH----------------
Confidence 99999999999999999988 6998 8886 58999999999999999999999988764332
Q ss_pred HHHhcccccCChhHHHHHHHHHHHhcCcCCHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCH
Q 015492 249 LAQYGDLVSLDRESVLRKIETIDKCFSHDTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSL 328 (406)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~ 328 (406)
+++++|+.+||.+++.+|++++.....++
T Consensus 478 ---------------------------------------------------~~a~~ia~~~p~a~~~~K~~l~~~~~~~~ 506 (550)
T PRK08184 478 ---------------------------------------------------IALEERASLSPDALTGMEANLRFAGPETM 506 (550)
T ss_pred ---------------------------------------------------HHHHHHHhCCHHHHHHHHHHHHhcCCCCH
Confidence 45899999999999999999999988999
Q ss_pred HHH-HHHHHHHHHHhcccCCCCcHHh---hhhheeeCCCCCCCCCCCC
Q 015492 329 DQC-LVREYRITLNGISKKVSNDFCE---GIRARLVDKDFAPKWDPPS 372 (406)
Q Consensus 329 ~~~-l~~e~~~~~~~~~~~~s~d~~e---gi~afl~ek~r~P~w~~~~ 372 (406)
+++ +.+|...+..++. ++|.+| |+++|+ || |+|+|+..+
T Consensus 507 ~~~~~~~e~~~~~~~~~---~~d~~e~~~g~~af~-ek-r~~~f~~~~ 549 (550)
T PRK08184 507 ETRIFGRLTAWQNWIFQ---RPNAVGEKGALKVYG-TG-QKAQFDWNR 549 (550)
T ss_pred HHHHHHHHHHHHHHHhc---CCcccccchHHHHhc-cC-CCCCCCCCC
Confidence 999 9999999888874 999999 999999 99 999998764
No 72
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=4.3e-46 Score=347.54 Aligned_cols=214 Identities=21% Similarity=0.285 Sum_probs=189.6
Q ss_pred CCCcEEEEEe-----CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhc
Q 015492 39 LQDQVLVEGR-----AKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNE 113 (406)
Q Consensus 39 ~~~~v~~~~~-----~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~ 113 (406)
|+++|.++.. ++|++|+||||++ |+||.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++...
T Consensus 1 ~~~~~~~~~~~~~~~~~i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~--- 76 (222)
T PRK05869 1 MNEFVNVVVSDGSQDAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTL--- 76 (222)
T ss_pred CccchhhhcccCcccCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhcc---
Confidence 4667777655 8999999999975 999999999999999999999999999999999999999999987542
Q ss_pred CChhhHHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcc
Q 015492 114 GKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLP 193 (406)
Q Consensus 114 ~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~ 193 (406)
.......+.+.+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++.++++++
T Consensus 77 -~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~i 155 (222)
T PRK05869 77 -SAQEADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAA 155 (222)
T ss_pred -ChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHh
Confidence 1112223344456788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHH-HHHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHH
Q 015492 194 GYL-GEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDK 272 (406)
Q Consensus 194 g~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (406)
|.. +++++++|++++|+||+++||||+++|++++.+.+.
T Consensus 156 g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------- 195 (222)
T PRK05869 156 GPSRAKELVFSGRFFDAEEALALGLIDEMVAPDDVYDAAA---------------------------------------- 195 (222)
T ss_pred CHHHHHHHHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHH----------------------------------------
Confidence 999 999999999999999999999999999887753222
Q ss_pred hcCcCCHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhh
Q 015492 273 CFSHDTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGR 324 (406)
Q Consensus 273 ~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~ 324 (406)
+++++|+..+|.+++.+|++++...
T Consensus 196 ---------------------------~~a~~ia~~~~~a~~~~K~~~~~~~ 220 (222)
T PRK05869 196 ---------------------------AWARRFLDGPPHALAAAKAGISDVY 220 (222)
T ss_pred ---------------------------HHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 4589999999999999999998764
No 73
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=5.9e-45 Score=350.91 Aligned_cols=262 Identities=16% Similarity=0.167 Sum_probs=210.8
Q ss_pred cccCCCCCCCc-cCCCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHc-----CCCcEEEEEEcC-CCCcc
Q 015492 27 FSALPDYSSND-YLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEE-----NPDIGFVLMKGA-GRAFC 99 (406)
Q Consensus 27 ~~~~~~~~~~~-~~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~-----d~~v~~VVltg~-G~~F~ 99 (406)
|++..||+... ..+-.|.++.+++|++|+|| |+++|+||.+|+.+|.+++++++. |+++++|||||. |++||
T Consensus 2 ~~~~~~~~~~~~~~~~~i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~Fc 80 (287)
T PRK08788 2 MSAVRPFPEAGELSQLRVYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFN 80 (287)
T ss_pred CCcccccccccccCceEEEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceE
Confidence 45566666533 34446777888999999996 999999999999999999999998 889999999999 79999
Q ss_pred cCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhc---cCCCcEEEEEccccccccchhhccCCeEEEeCCeeEeccccc
Q 015492 100 SGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQG---TFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQ 176 (406)
Q Consensus 100 ~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~---~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~ 176 (406)
+|+|++++.......+......+...+...+..+. .+||||||+|||+|+|||++|+++||+||++++++|++||++
T Consensus 81 aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~ 160 (287)
T PRK08788 81 LGGDLALFAELIRAGDRDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEIL 160 (287)
T ss_pred eCcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhh
Confidence 99999987532111111111222222233333332 799999999999999999999999999999999999999999
Q ss_pred ccccCCCchHHHHhhcchHH-HHHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhccc
Q 015492 177 MGFHPDAGASFYLSHLPGYL-GEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDL 255 (406)
Q Consensus 177 ~Gl~P~~g~~~~l~r~~g~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 255 (406)
+|++|++|+++++++++|.. +++|++||+.++|+||+++||||+++|++++.+...
T Consensus 161 lGl~p~~g~~~~l~~~vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~~a~----------------------- 217 (287)
T PRK08788 161 FNLFPGMGAYSFLARRVGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEAAVR----------------------- 217 (287)
T ss_pred hCcCCCchHHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHH-----------------------
Confidence 99999999999999999999 999999999999999999999999999987753222
Q ss_pred ccCChhHHHHHHHHHHHhcCcCCHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHH
Q 015492 256 VSLDRESVLRKIETIDKCFSHDTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVRE 335 (406)
Q Consensus 256 ~~~~~~~~~~~~~~i~~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e 335 (406)
+++++|+.. |.+....|+.++.....++++.++.|
T Consensus 218 --------------------------------------------~~a~~ia~~-~~~~~a~k~~~~~~~~~~~~~~~~~~ 252 (287)
T PRK08788 218 --------------------------------------------TFIRKSKRK-LNGWRAMLRARRRVNPLSLEELMDIT 252 (287)
T ss_pred --------------------------------------------HHHHHHhcC-ccHHHHHHHHHHhhccCCHHHHHHHH
Confidence 457888877 77777777777766667889999988
Q ss_pred HHHHHHhcccCCCCcHHhhhhhee
Q 015492 336 YRITLNGISKKVSNDFCEGIRARL 359 (406)
Q Consensus 336 ~~~~~~~~~~~~s~d~~egi~afl 359 (406)
......+.. ..+.-.+-|..|.
T Consensus 253 ~~~~~~~~~--~~~~~~~~~~~~~ 274 (287)
T PRK08788 253 EIWVDAALQ--LEEKDLRTMERLV 274 (287)
T ss_pred HHHHHHHhh--cccccHHHHHHHH
Confidence 777665543 3556677888887
No 74
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=7e-46 Score=328.81 Aligned_cols=259 Identities=20% Similarity=0.294 Sum_probs=235.0
Q ss_pred CCcEEEE----EeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCC-CCcccCCChHHHHHhhhcC
Q 015492 40 QDQVLVE----GRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEG 114 (406)
Q Consensus 40 ~~~v~~~----~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G-~~F~~G~Dl~~~~~~~~~~ 114 (406)
...+.++ .+.||..|-||||.++|+|+.-|+++|.++++.+..|+.+|+|+|.+.- +.||+|.|+++-.+.
T Consensus 26 ~~Ev~v~~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~M---- 101 (291)
T KOG1679|consen 26 ANEVFVRRLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTM---- 101 (291)
T ss_pred CceeeeeeccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcC----
Confidence 4456555 4568999999999999999999999999999999999999999999975 899999999986653
Q ss_pred ChhhHHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcch
Q 015492 115 KFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPG 194 (406)
Q Consensus 115 ~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g 194 (406)
...+...|+..++.++..+..+|.||||+|+|.|+|||++++++||+|+|+++++|+++|++++++|+.|++++|+|.+|
T Consensus 102 s~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg 181 (291)
T KOG1679|consen 102 SPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVG 181 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHh
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHh
Q 015492 195 YL-GEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKC 273 (406)
Q Consensus 195 ~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 273 (406)
.. +++|++||+.+++.||...||||++|..++-.+.+.
T Consensus 182 ~alaKELIftarvl~g~eA~~lGlVnhvv~qneegdaa~----------------------------------------- 220 (291)
T KOG1679|consen 182 VALAKELIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAY----------------------------------------- 220 (291)
T ss_pred HHHHHhHhhhheeccchhHHhcchHHHHHhcCccccHHH-----------------------------------------
Confidence 99 999999999999999999999999998865432111
Q ss_pred cCcCCHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHh
Q 015492 274 FSHDTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCE 353 (406)
Q Consensus 274 f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~e 353 (406)
+-+.++|++|.-+.|.+++++|..|+.+...++..++..|..-.++.+. +.|-.|
T Consensus 221 ----------------------~kal~lA~eilp~gPiavr~aKlAIn~G~evdiasgl~iEe~CYaq~i~---t~drLe 275 (291)
T KOG1679|consen 221 ----------------------QKALELAREILPQGPIAVRLAKLAINLGMEVDIASGLSIEEMCYAQIIP---TKDRLE 275 (291)
T ss_pred ----------------------HHHHHHHHHhccCCchhhhHHHHHhccCceecccccccHHHHHHHhcCc---HHHHHH
Confidence 1122679999999999999999999999999999999999998888885 899999
Q ss_pred hhhheeeCCCCCCCCCC
Q 015492 354 GIRARLVDKDFAPKWDP 370 (406)
Q Consensus 354 gi~afl~ek~r~P~w~~ 370 (406)
|+.+|. +| |+|.|++
T Consensus 276 glaaf~-ek-r~p~y~G 290 (291)
T KOG1679|consen 276 GLAAFK-EK-RKPEYKG 290 (291)
T ss_pred HHHHHH-hh-cCCCcCC
Confidence 999999 89 8999975
No 75
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.6e-45 Score=351.72 Aligned_cols=235 Identities=20% Similarity=0.265 Sum_probs=200.3
Q ss_pred CCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhh-c-----
Q 015492 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLN-E----- 113 (406)
Q Consensus 40 ~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~-~----- 113 (406)
++.+.++.+++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..... .
T Consensus 3 ~~~v~~~~~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~ 82 (288)
T PRK08290 3 YEYVRYEVAGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQ 82 (288)
T ss_pred CceEEEEeeCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCcccccccccccccccc
Confidence 4568999999999999999999999999999999999999999999999999999999999999998632110 0
Q ss_pred -----------CC-hhhHHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccC
Q 015492 114 -----------GK-FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHP 181 (406)
Q Consensus 114 -----------~~-~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P 181 (406)
.. ..........+..++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|+ |
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl-~ 161 (288)
T PRK08290 83 HPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGI-P 161 (288)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCc-C
Confidence 00 0011112233455677888999999999999999999999999999999999999999999999 4
Q ss_pred CCchHHHHhhcchHH-HHHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCCh
Q 015492 182 DAGASFYLSHLPGYL-GEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDR 260 (406)
Q Consensus 182 ~~g~~~~l~r~~g~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (406)
+ ++++++++++|.. +++|++||+.++|+||+++||||++||++++.+...
T Consensus 162 ~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~---------------------------- 212 (288)
T PRK08290 162 G-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETL---------------------------- 212 (288)
T ss_pred c-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHH----------------------------
Confidence 4 4567789999999 999999999999999999999999999877653222
Q ss_pred hHHHHHHHHHHHhcCcCCHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcC-CHHHHHHHHHHHH
Q 015492 261 ESVLRKIETIDKCFSHDTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQ-SLDQCLVREYRIT 339 (406)
Q Consensus 261 ~~~~~~~~~i~~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~-~~~~~l~~e~~~~ 339 (406)
+++++|++.+|.+++.+|++++...+. +++.++..|....
T Consensus 213 ---------------------------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~ 253 (288)
T PRK08290 213 ---------------------------------------ELARRIAAMPPFGLRLTKRAVNQTLDAQGFRAALDAVFDLH 253 (288)
T ss_pred ---------------------------------------HHHHHHHhCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 458999999999999999999987765 6999999988887
Q ss_pred HHhc
Q 015492 340 LNGI 343 (406)
Q Consensus 340 ~~~~ 343 (406)
....
T Consensus 254 ~~~~ 257 (288)
T PRK08290 254 QLGH 257 (288)
T ss_pred HHcc
Confidence 7654
No 76
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.2e-44 Score=337.87 Aligned_cols=225 Identities=15% Similarity=0.121 Sum_probs=197.5
Q ss_pred CCCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhh
Q 015492 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (406)
Q Consensus 39 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~ 118 (406)
|++.+.++.+++|++|||||| +.|++|.+|+.+|.++++.++ +++++||++|.|++||+|+|++++... ...
T Consensus 1 ~~~~i~~~~~~~v~~itln~~-~~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~-----~~~ 72 (229)
T PRK06213 1 MSELVSYTLEDGVATITLDDG-KVNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSG-----AQA 72 (229)
T ss_pred CcceEEEEecCCEEEEEeCCC-CCCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcc-----hHh
Confidence 455789999999999999998 569999999999999999987 557999999999999999999987531 222
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCC-eeEecccccccccCCCchHHHHhhcchHH-
Q 015492 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK-TVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (406)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~- 196 (406)
...+.....+++.++.++||||||+|||+|+|||++|+++||||||+++ ++|++||+++|++|+.|+..++++++|..
T Consensus 73 ~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~ 152 (229)
T PRK06213 73 AIALLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSA 152 (229)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHH
Confidence 3345566677888999999999999999999999999999999999999 99999999999998888888899999998
Q ss_pred HHHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCc
Q 015492 197 GEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSH 276 (406)
Q Consensus 197 a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 276 (406)
+++++++|++++|+||+++||||+|+|++++.+...
T Consensus 153 a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------- 188 (229)
T PRK06213 153 FQRAVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQ-------------------------------------------- 188 (229)
T ss_pred HHHHHHcCcccCHHHHHHCCCceeccChHHHHHHHH--------------------------------------------
Confidence 999999999999999999999999999877653222
Q ss_pred CCHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 015492 277 DTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRI 338 (406)
Q Consensus 277 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~ 338 (406)
++++++++.+|.+++.+|++++......+.++++.|.+.
T Consensus 189 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~~ 227 (229)
T PRK06213 189 -----------------------AAARELAGLNMGAHAATKLKVRAAALEAIRAAIEGDAAE 227 (229)
T ss_pred -----------------------HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhchhhhhhh
Confidence 458999999999999999999987776778877777654
No 77
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=3.5e-44 Score=384.92 Aligned_cols=287 Identities=17% Similarity=0.212 Sum_probs=224.7
Q ss_pred cEEEEE-eCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHH
Q 015492 42 QVLVEG-RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFK 120 (406)
Q Consensus 42 ~v~~~~-~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~ 120 (406)
.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..... .......
T Consensus 7 ~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~-~~~~~~~ 85 (715)
T PRK11730 7 TLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFA-APEEELS 85 (715)
T ss_pred eEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhcc-CCHHHHH
Confidence 477774 79999999999999999999999999999999999999999999999999999999998754211 1122234
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-HHH
Q 015492 121 NFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEY 199 (406)
Q Consensus 121 ~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~ 199 (406)
.+...++.++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. |++
T Consensus 86 ~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~ 165 (715)
T PRK11730 86 QWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALE 165 (715)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHH
Confidence 4556667788899999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcCCH
Q 015492 200 LALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHDTI 279 (406)
Q Consensus 200 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 279 (406)
|++||++++|+||+++||||+|||++++.+.+.++++....++........ ....+. .. ..+.+++..
T Consensus 166 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~---~~~~p~--a~----~~~~~~~~~--- 233 (715)
T PRK11730 166 WIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDWKARRQ---PKLEPL--KL----SKIEAMMSF--- 233 (715)
T ss_pred HHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCccccccC---cccccc--cc----cchhHHHHH---
Confidence 999999999999999999999999988876666654332221100000000 000000 00 000000000
Q ss_pred HHHHHHHHhhhcccccHHHHH-HHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhhe
Q 015492 280 EEIIDALENEAASSYDVWCRK-AVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRAR 358 (406)
Q Consensus 280 ~~i~~~l~~~~~~~~~~~a~~-~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~af 358 (406)
..+.+ +.++..++.|.++ .++++++.+...+++++++.|.+.+..++. ++|++||+++|
T Consensus 234 ----------------~~~k~~~~~~~~~~~pa~~-~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~---s~d~~egi~aF 293 (715)
T PRK11730 234 ----------------TTAKGMVAQKAGKHYPAPM-TAVKTIEAAAGLGRDEALELEAKGFVKLAK---TNVARALVGIF 293 (715)
T ss_pred ----------------HHHHHHHHHhhccCCccHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence 01111 2345667777777 568899988888999999999999999884 99999999999
Q ss_pred eeCC
Q 015492 359 LVDK 362 (406)
Q Consensus 359 l~ek 362 (406)
+ ++
T Consensus 294 ~-~~ 296 (715)
T PRK11730 294 L-ND 296 (715)
T ss_pred H-HH
Confidence 9 55
No 78
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.2e-44 Score=347.09 Aligned_cols=217 Identities=21% Similarity=0.249 Sum_probs=185.8
Q ss_pred CCCcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcC--C-
Q 015492 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEG--K- 115 (406)
Q Consensus 39 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~--~- 115 (406)
.++.|.++.+++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++....... .
T Consensus 8 ~~~~v~~e~~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~ 87 (302)
T PRK08272 8 NLKTMTYEVTGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGG 87 (302)
T ss_pred CCCeEEEEeECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhccccccccc
Confidence 3557999999999999999999999999999999999999999999999999999999999999999886421100 0
Q ss_pred ----------------hhh--HHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccc
Q 015492 116 ----------------FED--FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQM 177 (406)
Q Consensus 116 ----------------~~~--~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~ 177 (406)
... ...++.....++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~ 167 (302)
T PRK08272 88 AYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRV 167 (302)
T ss_pred ccccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchhc
Confidence 000 01224455667788899999999999999999999999999999999999999999998
Q ss_pred cccCCCchHHHHhhcchHH-HHHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccc
Q 015492 178 GFHPDAGASFYLSHLPGYL-GEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLV 256 (406)
Q Consensus 178 Gl~P~~g~~~~l~r~~g~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 256 (406)
|.+|+. ..+++++|.. |++|++||++++|+||+++||||++||++++.+.+.
T Consensus 168 gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~------------------------ 220 (302)
T PRK08272 168 WGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTE------------------------ 220 (302)
T ss_pred ccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHHH------------------------
Confidence 666643 3567889999 999999999999999999999999999877653322
Q ss_pred cCChhHHHHHHHHHHHhcCcCCHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhc
Q 015492 257 SLDRESVLRKIETIDKCFSHDTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRF 325 (406)
Q Consensus 257 ~~~~~~~~~~~~~i~~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~ 325 (406)
+++++|++.||.+++.+|++++...+
T Consensus 221 -------------------------------------------~la~~ia~~~~~a~~~~K~~l~~~~~ 246 (302)
T PRK08272 221 -------------------------------------------RLVERIAAVPVNQLAMVKLAVNSALL 246 (302)
T ss_pred -------------------------------------------HHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 45899999999999999999998765
No 79
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=6.1e-43 Score=340.47 Aligned_cols=284 Identities=18% Similarity=0.279 Sum_probs=213.0
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCC-CCcccCCChHHHHHhhhcCChhhHHHHHHHHHHH
Q 015492 51 SRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQF 129 (406)
Q Consensus 51 v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G-~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l 129 (406)
+++|+||||+++|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++..... ........+...++++
T Consensus 38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~-~~~~~~~~~~~~~~~l 116 (360)
T TIGR03200 38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYA-GNPQEYRQYMRLFNDM 116 (360)
T ss_pred EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcc-cChhHHHHHHHHHHHH
Confidence 456999999999999999999999999999999999999999999 69999999998765321 1122234455556678
Q ss_pred HHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-HHHHhhcCCCcC
Q 015492 130 VYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYLALTGEKLN 208 (406)
Q Consensus 130 ~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l~ltG~~i~ 208 (406)
+..+..++|||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. |++++++|++++
T Consensus 117 ~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~s 196 (360)
T TIGR03200 117 VSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWS 196 (360)
T ss_pred HHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCc
Confidence 8889999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHcCccceeccCCChHHHHHHHHhhccCCHH-HHHHHHHHhcccccCCh---hHHHHHHHHHHHhc-CcCCHHHHH
Q 015492 209 GVEMIACGLATHYTLNGRLPLVEERVGKLITDDPS-IIETSLAQYGDLVSLDR---ESVLRKIETIDKCF-SHDTIEEII 283 (406)
Q Consensus 209 A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~f-~~~~~~~i~ 283 (406)
|+||+++|||++|||+.++.. +.. .+|. .-.+....+....+.+. ..+.....+++.+- +...+.+-
T Consensus 197 A~EA~~~GLVd~VVp~~~~~~--~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~l~~~- 268 (360)
T TIGR03200 197 AHKAKRLGIIMDVVPALKVDG--KFV-----ANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKELIKQGTIDLSLLDEA- 268 (360)
T ss_pred HHHHHHcCChheecCchhcCc--chh-----cCcccchHHHHHHHhHHhcCCCcchhHHHHHHHHHhcccchHhHHHHH-
Confidence 999999999999999988720 000 1111 01112222222221111 11222222333221 11112221
Q ss_pred HHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhheeeCC
Q 015492 284 DALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRARLVDK 362 (406)
Q Consensus 284 ~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~afl~ek 362 (406)
..+++.++....|..+.-+++-++......++..-..-...+..-+ ..+..+|++||. ++
T Consensus 269 --------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~ 328 (360)
T TIGR03200 269 --------------VEALCAKLLNTFPECLTKSIEELRKPKLFAWNQNKENSRAWLALNM----MNEARTGFRAFN-EG 328 (360)
T ss_pred --------------HHHHHHHHHHhchHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHhhc----ccccchhhHHHh-cc
Confidence 2245778889999999999999998877666665554444444333 478999999998 74
No 80
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=1.3e-42 Score=372.71 Aligned_cols=283 Identities=17% Similarity=0.216 Sum_probs=220.8
Q ss_pred CCcEEEEE-eCcEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCC-CCcccCCChHHHHHhhhcCCh
Q 015492 40 QDQVLVEG-RAKSRAAILNRP-SNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKF 116 (406)
Q Consensus 40 ~~~v~~~~-~~~v~~Itlnrp-~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G-~~F~~G~Dl~~~~~~~~~~~~ 116 (406)
...+.++. +++|++|||||| ++.|+||.+|+.+|.++++.++.|+++++|||+|.+ ++||+|+|++++... ...
T Consensus 4 ~~~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~---~~~ 80 (708)
T PRK11154 4 ASAFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAAC---KTA 80 (708)
T ss_pred CceEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhcc---CCH
Confidence 34577777 789999999999 689999999999999999999999999999999875 899999999987532 111
Q ss_pred hhHHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCC--eeEecccccccccCCCchHHHHhhcch
Q 015492 117 EDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK--TVFSNPETQMGFHPDAGASFYLSHLPG 194 (406)
Q Consensus 117 ~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~--a~f~~pe~~~Gl~P~~g~~~~l~r~~g 194 (406)
.....+......++.++.++||||||+|||+|+|||++|+++||||||+++ ++|++||+++|++|++|++++|++++|
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG 160 (708)
T PRK11154 81 QEAEALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIG 160 (708)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcC
Confidence 222334455567888999999999999999999999999999999999996 599999999999999999999999999
Q ss_pred HH-HHHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHh
Q 015492 195 YL-GEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKC 273 (406)
Q Consensus 195 ~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 273 (406)
.. |++|++||++++|+||+++||||++++++++.+.+.+++......+..+. +.. .+
T Consensus 161 ~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~~~~~--~~~--------------------~~ 218 (708)
T PRK11154 161 VSTALDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPARRPLP--VRE--------------------RL 218 (708)
T ss_pred HHHHHHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcCCccCcCC--chh--------------------hh
Confidence 99 99999999999999999999999999998887666655432100000000 000 00
Q ss_pred cCcCCH--HHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcH
Q 015492 274 FSHDTI--EEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDF 351 (406)
Q Consensus 274 f~~~~~--~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~ 351 (406)
.+.... ..+. +.+.+.+++-.+..-.|+..+|++++.+...++++++..|.+.+..++. |+|+
T Consensus 219 ~~~~p~~~~~~~------------~~~~~~~~~~~~g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~---s~~~ 283 (708)
T PRK11154 219 LEGNPLGRALLF------------KQARKKTLAKTQGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAM---TPES 283 (708)
T ss_pred cccCchhHHHHH------------HHHHHHHHHhcccCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhC---CHHH
Confidence 000000 0000 0111112222233346899999999998888999999999999999884 9999
Q ss_pred HhhhhheeeCC
Q 015492 352 CEGIRARLVDK 362 (406)
Q Consensus 352 ~egi~afl~ek 362 (406)
+|++++|+.++
T Consensus 284 ~~~~~aF~~~~ 294 (708)
T PRK11154 284 AALRSIFFATT 294 (708)
T ss_pred HHHHHHHHHHH
Confidence 99999999654
No 81
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=5.5e-43 Score=313.09 Aligned_cols=260 Identities=22% Similarity=0.326 Sum_probs=222.3
Q ss_pred CCCcEEEE---EeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhh--c
Q 015492 39 LQDQVLVE---GRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLN--E 113 (406)
Q Consensus 39 ~~~~v~~~---~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~--~ 113 (406)
.++.+.+. .++.|..+.||||.|.|+||..|+.|+.++++.+..||++|+|||+|.|+.||+|.|+..+..... +
T Consensus 17 s~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~ 96 (292)
T KOG1681|consen 17 SYKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQP 96 (292)
T ss_pred ccceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhcccc
Confidence 45555554 355799999999999999999999999999999999999999999999999999999877643211 1
Q ss_pred C------ChhhHHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHH
Q 015492 114 G------KFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASF 187 (406)
Q Consensus 114 ~------~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~ 187 (406)
. ......++...+++.+..|.+||||||++|+|+|+|||..|..+||+|+|+++|.|+.-|+.+|+..+.|...
T Consensus 97 ~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~ 176 (292)
T KOG1681|consen 97 EGDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLN 176 (292)
T ss_pred ccchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHh
Confidence 1 1223456667788888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcchHH--HHHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHH
Q 015492 188 YLSHLPGYL--GEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLR 265 (406)
Q Consensus 188 ~l~r~~g~~--a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (406)
+||+.+|.+ ++++.+|++.|+|.||++.|||.+|+|+-+-. ....+
T Consensus 177 RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~l-l~~~l------------------------------- 224 (292)
T KOG1681|consen 177 RLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDKEEL-LNGAL------------------------------- 224 (292)
T ss_pred hhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHH-HhhhH-------------------------------
Confidence 999999965 99999999999999999999999999985432 11111
Q ss_pred HHHHHHHhcCcCCHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccc
Q 015492 266 KIETIDKCFSHDTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISK 345 (406)
Q Consensus 266 ~~~~i~~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~ 345 (406)
..|+.|+.++|.++..||+.++..++.+.+++|..-.......+
T Consensus 225 ----------------------------------~mA~~Ia~KSpvaVqgTK~~L~ysrehsv~~sLnyvatwNms~L-- 268 (292)
T KOG1681|consen 225 ----------------------------------PMAELIASKSPVAVQGTKENLLYSREHSVEESLNYVATWNMSML-- 268 (292)
T ss_pred ----------------------------------HHHHHhccCCceeeechHHHHHHHhhhhhhhhHHHHHHHHHHHH--
Confidence 46899999999999999999999999999999987777654444
Q ss_pred CCCCcHHhhhhheeeCCCCCC-CCC
Q 015492 346 KVSNDFCEGIRARLVDKDFAP-KWD 369 (406)
Q Consensus 346 ~~s~d~~egi~afl~ek~r~P-~w~ 369 (406)
.++|+.+++.|-+ +| ++| .|.
T Consensus 269 -~s~Dl~~av~a~m-~k-~k~~tfs 290 (292)
T KOG1681|consen 269 -LSDDLVKAVMAQM-EK-LKTVTFS 290 (292)
T ss_pred -HHHHHHHHHHHHh-hc-CCCCCcc
Confidence 3999999999999 67 444 364
No 82
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=1.5e-41 Score=363.89 Aligned_cols=277 Identities=17% Similarity=0.192 Sum_probs=217.4
Q ss_pred EEeCcEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEE-EcCCCCcccCCChHHHHHhhhcCChhhHHHHH
Q 015492 46 EGRAKSRAAILNRP-SNLNALNTSMVGRLKRLYESWEENPDIGFVLM-KGAGRAFCSGGDVIALYQLLNEGKFEDFKNFF 123 (406)
Q Consensus 46 ~~~~~v~~Itlnrp-~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVl-tg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~ 123 (406)
+.+++|++|||||| ++.|+||.+|+.+|.++++.++.|+++++||| +|.|++||+|+|++++... ........+.
T Consensus 6 ~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~---~~~~~~~~~~ 82 (699)
T TIGR02440 6 VREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAAC---QTAGEAKALA 82 (699)
T ss_pred EcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhcc---CChhHHHHHH
Confidence 45789999999999 68999999999999999999999999999986 6788999999999987531 1122233445
Q ss_pred HHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCC--eeEecccccccccCCCchHHHHhhcchHH-HHHH
Q 015492 124 ETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK--TVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYL 200 (406)
Q Consensus 124 ~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~--a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l 200 (406)
...+.++..+.++||||||+|||+|+|||++|+++||||||+++ ++|++||+++|++|++|++++|++++|.. +++|
T Consensus 83 ~~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~l 162 (699)
T TIGR02440 83 QQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDM 162 (699)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHH
Confidence 55677888899999999999999999999999999999999985 79999999999999999999999999999 9999
Q ss_pred hhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhc--cCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcCC
Q 015492 201 ALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLI--TDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHDT 278 (406)
Q Consensus 201 ~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 278 (406)
++||+.++|+||+++||||+++|++++.+.+.++++.. ...+.... ........ . .
T Consensus 163 lltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~~~~~~~~~~~---~~~~~~~~-~------------------a 220 (699)
T TIGR02440 163 ILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKGKPIRKPLSLQ---ERLLEGTP-L------------------G 220 (699)
T ss_pred HHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhCCCCCCCccch---hhhcccCc-h------------------h
Confidence 99999999999999999999999998876666664310 00000000 00000000 0 0
Q ss_pred HHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhhe
Q 015492 279 IEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRAR 358 (406)
Q Consensus 279 ~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~af 358 (406)
...+. +++.+.+++-....-.|...+|+.++.+...+++++++.|.+.+..++. |+|.++++++|
T Consensus 221 ~~~~~------------~~~~k~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~---s~~~~~~~~~f 285 (699)
T TIGR02440 221 RALLF------------DQAAKKTAKKTQGNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVM---TPESAALRSIF 285 (699)
T ss_pred HHHHH------------HHHHHHHHHhcccCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC---CHHHHHHHHHH
Confidence 00000 0111222222333456777789999999989999999999999999985 99999999999
Q ss_pred eeCC
Q 015492 359 LVDK 362 (406)
Q Consensus 359 l~ek 362 (406)
+.++
T Consensus 286 ~~~~ 289 (699)
T TIGR02440 286 FATT 289 (699)
T ss_pred HHHH
Confidence 9665
No 83
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=1.8e-41 Score=310.23 Aligned_cols=253 Identities=25% Similarity=0.311 Sum_probs=227.0
Q ss_pred CCCcEEEEEeCcEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChh
Q 015492 39 LQDQVLVEGRAKSRAAILN-RPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFE 117 (406)
Q Consensus 39 ~~~~v~~~~~~~v~~Itln-rp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~ 117 (406)
.+..+.++++||+++|.+| ||++.|+++.+++.++..+|..+.+|+++..++++|.|++||+|.|+..+......+...
T Consensus 5 ~~~~~vv~~~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~ 84 (266)
T KOG0016|consen 5 RYREIVVTRENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDANE 84 (266)
T ss_pred cccceEEEecCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCcccc
Confidence 4567999999999999999 999999999999999999999999999999999999999999999999987654333222
Q ss_pred hH---HHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcch
Q 015492 118 DF---KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPG 194 (406)
Q Consensus 118 ~~---~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g 194 (406)
.. ..+...+..++..+..+|||+||+|||+|+|.|+.+...||+++|+|+++|..|++++|+.|.+|+++++|+++|
T Consensus 85 ~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~imG 164 (266)
T KOG0016|consen 85 ESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIMG 164 (266)
T ss_pred cchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHhhc
Confidence 22 233444455788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHh
Q 015492 195 YL-GEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKC 273 (406)
Q Consensus 195 ~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 273 (406)
.. |.+|++.|++++|+||...|||+++++.+.+.+.+.
T Consensus 165 ~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~----------------------------------------- 203 (266)
T KOG0016|consen 165 SASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEEVL----------------------------------------- 203 (266)
T ss_pred hhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHHHH-----------------------------------------
Confidence 99 999999999999999999999999999977753221
Q ss_pred cCcCCHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHh
Q 015492 274 FSHDTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCE 353 (406)
Q Consensus 274 f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~e 353 (406)
+.++++++.+|.+++..|++++......+..+.+.|.+.....| .++|+.+
T Consensus 204 --------------------------~~ikq~s~l~p~sl~~~K~L~rs~~k~~l~~an~~E~~~l~~~W---~s~e~~~ 254 (266)
T KOG0016|consen 204 --------------------------KKIKQYSKLSPESLLGMKKLLRSNIKEELIKANEEECNVLLKQW---VSAECLA 254 (266)
T ss_pred --------------------------HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhc---cChHHHH
Confidence 34789999999999999999999888899999999999999888 5999999
Q ss_pred hhhheeeCC
Q 015492 354 GIRARLVDK 362 (406)
Q Consensus 354 gi~afl~ek 362 (406)
.+.+|+ .|
T Consensus 255 ~~~~~~-~~ 262 (266)
T KOG0016|consen 255 RFKQYL-SK 262 (266)
T ss_pred HHHHHh-cc
Confidence 999999 54
No 84
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=4.1e-41 Score=360.59 Aligned_cols=287 Identities=15% Similarity=0.196 Sum_probs=222.5
Q ss_pred cEEEEE-eCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHH
Q 015492 42 QVLVEG-RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFK 120 (406)
Q Consensus 42 ~v~~~~-~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~ 120 (406)
.+.++. +++|++|+||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..... .......
T Consensus 7 ~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~~~ 85 (714)
T TIGR02437 7 TIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFA-LPDAELI 85 (714)
T ss_pred eEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhccc-CCHHHHH
Confidence 467774 78999999999999999999999999999999999999999999999999999999999854211 1122233
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-HHH
Q 015492 121 NFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEY 199 (406)
Q Consensus 121 ~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~ 199 (406)
.+.+..+.++..+..+||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|.. |++
T Consensus 86 ~~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~ 165 (714)
T TIGR02437 86 QWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALE 165 (714)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHH
Confidence 4555567788899999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCC-HHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcCC
Q 015492 200 LALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDD-PSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHDT 278 (406)
Q Consensus 200 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 278 (406)
|++||++++|+||+++||||+++|.+++.+.+.++++..... +.... .. .+...... ...+.+++..
T Consensus 166 llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~~~~~~-------~~-~~~~~~~~--~~~~~~~~~~-- 233 (714)
T TIGR02437 166 WIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLDWKA-------KR-QPKLEPLK--LSKIEAMMSF-- 233 (714)
T ss_pred HHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcCCcccc-------cC-CCCccccc--ccchHHHHHH--
Confidence 999999999999999999999999988876665554221110 00000 00 00000000 0001111100
Q ss_pred HHHHHHHHHhhhcccccHHHHH-HHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhh
Q 015492 279 IEEIIDALENEAASSYDVWCRK-AVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRA 357 (406)
Q Consensus 279 ~~~i~~~l~~~~~~~~~~~a~~-~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~a 357 (406)
+++.+ ..++..++.|..... .+.++.+...++++++..|.+.|.+++. |++.++.++.
T Consensus 234 -----------------~~~~~~~~~~~~~~~pap~~~-~~~v~~~~~~~~~~gl~~E~~~f~~l~~---s~~a~~l~~~ 292 (714)
T TIGR02437 234 -----------------TTAKGMVAQVAGPHYPAPMTA-VKTIEKAARFGRDKALEIEAKGFVKLAK---TSEAKALIGL 292 (714)
T ss_pred -----------------HHHHHHHHHhhcCCCCCHHHH-HHHHHHHhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence 11112 344455555555554 5788888888999999999999999995 9999999999
Q ss_pred eeeCC
Q 015492 358 RLVDK 362 (406)
Q Consensus 358 fl~ek 362 (406)
|+.++
T Consensus 293 ff~~r 297 (714)
T TIGR02437 293 FLNDQ 297 (714)
T ss_pred HhhhH
Confidence 99655
No 85
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=100.00 E-value=1e-40 Score=314.67 Aligned_cols=183 Identities=16% Similarity=0.177 Sum_probs=156.7
Q ss_pred EEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcE-EEEEEcCCCCcccCCChHHHHHhhhcCChhhHHH
Q 015492 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIG-FVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKN 121 (406)
Q Consensus 43 v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~-~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~ 121 (406)
+.++.+++|++|+||||++ |+||.+|+.+|.++++.++.|++++ +||++|.|++||+|+|++++... .........
T Consensus 2 ~~~~~~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~--~~~~~~~~~ 78 (239)
T PLN02267 2 CTLEKRGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAA--GSAPSRLHL 78 (239)
T ss_pred ceeEecCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhcc--ccCHHHHHH
Confidence 5678899999999999986 9999999999999999999998865 78889999999999999986421 111222233
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEe-CCeeEecccccccccCCCchHHHHhhcchHH-H-H
Q 015492 122 FFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVT-DKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G-E 198 (406)
Q Consensus 122 ~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~-~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a-~ 198 (406)
+...+.+++..+.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++++++++.++++++|.. + +
T Consensus 79 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~ 158 (239)
T PLN02267 79 MVAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARR 158 (239)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHH
Confidence 44556778888999999999999999999999999999999998 5689999999999974444578999999988 7 6
Q ss_pred HHhhcCCCcCHHHHHHcCccceeccC-CChH
Q 015492 199 YLALTGEKLNGVEMIACGLATHYTLN-GRLP 228 (406)
Q Consensus 199 ~l~ltG~~i~A~eA~~~GLv~~vv~~-~~l~ 228 (406)
+|+++|++++|+||+++||||+++|+ +++.
T Consensus 159 ~llltG~~~~a~eA~~~Glv~~vv~~~~~l~ 189 (239)
T PLN02267 159 DVLLRAAKLTAEEAVEMGIVDSAHDSAEETV 189 (239)
T ss_pred HHHHcCCcCCHHHHHHCCCcceecCCHHHHH
Confidence 99999999999999999999999985 4554
No 86
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=2.7e-40 Score=355.07 Aligned_cols=290 Identities=19% Similarity=0.216 Sum_probs=215.3
Q ss_pred CcEEEEEeCcEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCcEEE-EEEcCCCCcccCCChHHHHHhhhcCChhh
Q 015492 41 DQVLVEGRAKSRAAILNRPS-NLNALNTSMVGRLKRLYESWEENPDIGFV-LMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (406)
Q Consensus 41 ~~v~~~~~~~v~~Itlnrp~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~V-Vltg~G~~F~~G~Dl~~~~~~~~~~~~~~ 118 (406)
..+.++++++|++||||||+ +.|+||.+|+.+|.++++.++.|+++++| |+||.|++||+|+|++++... .....
T Consensus 13 ~~~~~~~~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~---~~~~~ 89 (737)
T TIGR02441 13 THRHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAAC---KTAQE 89 (737)
T ss_pred CeEEEEEECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhcc---CChHH
Confidence 35888999999999999998 58999999999999999999999999965 679999999999999998631 12233
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCC--eeEecccccccccCCCchHHHHhhcchHH
Q 015492 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK--TVFSNPETQMGFHPDAGASFYLSHLPGYL 196 (406)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~--a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~ 196 (406)
...+......++.++.++||||||+|||+|+|||++|+++||||||+++ ++|++||+++|++|++|++++|++++|..
T Consensus 90 ~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG~~ 169 (737)
T TIGR02441 90 VTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVP 169 (737)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhCHH
Confidence 3445566677888999999999999999999999999999999999987 58999999999999999999999999998
Q ss_pred -HHHHhhcCCCcCHHHHHHcCccceeccC--CC-----------hHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhH
Q 015492 197 -GEYLALTGEKLNGVEMIACGLATHYTLN--GR-----------LPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRES 262 (406)
Q Consensus 197 -a~~l~ltG~~i~A~eA~~~GLv~~vv~~--~~-----------l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (406)
|++|+++|++++|+||+++||||+||++ ++ +.+.+.+++..+...+... +...... +....
T Consensus 170 ~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~~~----~~~~~~~-~~~~~ 244 (737)
T TIGR02441 170 AALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSI----NRDKGLV-HKITQ 244 (737)
T ss_pred HHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcccCCc----ccccccc-Cccch
Confidence 9999999999999999999999999986 21 2222222221110000000 0000000 00000
Q ss_pred HHHHHHHHHHhcCc-CCHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 015492 263 VLRKIETIDKCFSH-DTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLN 341 (406)
Q Consensus 263 ~~~~~~~i~~~f~~-~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~ 341 (406)
.. ... .....+.+ .....+.++...+.|...+ ..+.+..+...++++++..|.+.|..
T Consensus 245 ~~---------~~~~~~~~~~~~-----------~~~~~~~~~~~g~~~Ap~~-~l~~v~~~~~~~~~~gl~~E~~~f~~ 303 (737)
T TIGR02441 245 YV---------MTNPFVRQQVYK-----------TAEDKVMKQTKGLYPAPLK-ILDVVRTGYDQGPDAGYEAESKAFGE 303 (737)
T ss_pred hh---------cccchhHHHHHH-----------HHHHHHHHhccCCCccHHH-HHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 00 000 00000111 1111334443344555555 47788888888999999999999999
Q ss_pred hcccCCCCcHHhhhhheeeCC
Q 015492 342 GISKKVSNDFCEGIRARLVDK 362 (406)
Q Consensus 342 ~~~~~~s~d~~egi~afl~ek 362 (406)
++. |+..+.-+..|+.++
T Consensus 304 l~~---s~~a~al~~~f~~~~ 321 (737)
T TIGR02441 304 LSM---TFESKALIGLFHGQT 321 (737)
T ss_pred HhC---CHHHHHHHHHHHHHH
Confidence 995 999999999998765
No 87
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=100.00 E-value=1.6e-41 Score=301.61 Aligned_cols=256 Identities=19% Similarity=0.264 Sum_probs=207.9
Q ss_pred CCCcEEEEEe-CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcC--C-CCcccCCChHHHHHhhhcC
Q 015492 39 LQDQVLVEGR-AKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGA--G-RAFCSGGDVIALYQLLNEG 114 (406)
Q Consensus 39 ~~~~v~~~~~-~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~--G-~~F~~G~Dl~~~~~~~~~~ 114 (406)
.++.|.+++. ++|+.||||||+++|++.+..+.||.++|..+..|++|.+|||||. | .+||+|+|-+--.....-.
T Consensus 16 ~y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~ 95 (282)
T COG0447 16 GYEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYV 95 (282)
T ss_pred CcceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCcc
Confidence 4678999998 9999999999999999999999999999999999999999999985 5 7999999986533210000
Q ss_pred ChhhHHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcch
Q 015492 115 KFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPG 194 (406)
Q Consensus 115 ~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g 194 (406)
+.+...+ -++.++-+.|+.+||||||.|+|+++|||-.|-+.||+.||+++|+|+....++|-+-++.++..|.|.+|
T Consensus 96 ~d~~~~r--LnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VG 173 (282)
T COG0447 96 DDDGIPR--LNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVG 173 (282)
T ss_pred CCccCcc--cchhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhh
Confidence 1111111 12334556678999999999999999999999999999999999999999999999988888999999999
Q ss_pred HH-HHHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHh
Q 015492 195 YL-GEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKC 273 (406)
Q Consensus 195 ~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 273 (406)
.. |+++.+.++.++|+||+++|+||.|||.++|++...
T Consensus 174 qKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v----------------------------------------- 212 (282)
T COG0447 174 QKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETV----------------------------------------- 212 (282)
T ss_pred hhhhHHhhhhhhhccHHHHHhcCceeeeccHHHHHHHHH-----------------------------------------
Confidence 99 999999999999999999999999999999863222
Q ss_pred cCcCCHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHh
Q 015492 274 FSHDTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCE 353 (406)
Q Consensus 274 f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~e 353 (406)
+++++|.++||.|++..|..+|...+ ++. ++..=.-....+.. .+++.+|
T Consensus 213 --------------------------~W~~E~l~kSP~AlR~LK~Afnad~D-Gla-G~q~~ag~at~L~Y--mTdEa~E 262 (282)
T COG0447 213 --------------------------QWAREMLAKSPTALRMLKAAFNADCD-GLA-GLQELAGNATLLYY--MTDEAQE 262 (282)
T ss_pred --------------------------HHHHHHHhcChHHHHHHHHHhcCCCc-hhh-HHHHhcccceEEEE--echhhhh
Confidence 34789999999999999999985433 221 11111111111222 4899999
Q ss_pred hhhheeeCCCCCCCCC
Q 015492 354 GIRARLVDKDFAPKWD 369 (406)
Q Consensus 354 gi~afl~ek~r~P~w~ 369 (406)
|..||+ || |+|.|+
T Consensus 263 Gr~AF~-eK-R~Pdf~ 276 (282)
T COG0447 263 GRDAFL-EK-RKPDFS 276 (282)
T ss_pred hHHHHh-hc-cCCChH
Confidence 999999 99 999986
No 88
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=2.1e-39 Score=285.43 Aligned_cols=253 Identities=20% Similarity=0.261 Sum_probs=221.0
Q ss_pred EEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHH
Q 015492 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNF 122 (406)
Q Consensus 43 v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 122 (406)
.+++.+++|.-|+||+|+++|.|+.+|+.+|.+.+....++.++|+|||+..|+.||+|.|++++.. ++..+.....
T Consensus 34 g~~~~~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~---e~g~d~haev 110 (287)
T KOG1682|consen 34 GLVKEHNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTN---EPGSDIHAEV 110 (287)
T ss_pred cccccccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhc---CccchHHHHH
Confidence 4566779999999999999999999999999999988888889999999999999999999999876 3445666778
Q ss_pred HHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-HHHHh
Q 015492 123 FETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYLA 201 (406)
Q Consensus 123 ~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l~ 201 (406)
+..+.+++..|+++|+||||.|||+|..+|+.|...||+++|+++++|..|...+|++...-|. -|.|.+... +.+|+
T Consensus 111 Fqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGv-AlaRavpRkva~~ML 189 (287)
T KOG1682|consen 111 FQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGV-ALARAVPRKVAAYML 189 (287)
T ss_pred HHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcch-hHhhhcchhHHHHHH
Confidence 8889999999999999999999999999999999999999999999999999999997755443 377888888 99999
Q ss_pred hcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccccCChhHHHHHHHHHHHhcCcCCHHH
Q 015492 202 LTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHDTIEE 281 (406)
Q Consensus 202 ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~ 281 (406)
+||.+++++||+.-|||++|||++++....+
T Consensus 190 ~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~------------------------------------------------- 220 (287)
T KOG1682|consen 190 MTGLPITGEEALISGLVSKVVPAEELDKEIE------------------------------------------------- 220 (287)
T ss_pred HhCCCCchHHHHHhhhhhhcCCHHHHHHHHH-------------------------------------------------
Confidence 9999999999999999999999998863222
Q ss_pred HHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhheeeC
Q 015492 282 IIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRARLVD 361 (406)
Q Consensus 282 i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~afl~e 361 (406)
+++.+|...|...+.+.|+.+......+-.+++....+....-+ .-.|.+||+.+|+ +
T Consensus 221 ------------------~i~~~i~~~srav~slgk~f~y~q~~ms~~ea~~~~~~~m~~n~---ql~d~kegiasf~-~ 278 (287)
T KOG1682|consen 221 ------------------EITNAIKAKSRAVISLGKEFYYKQLAMSQAEAFSAAQEKMCENF---QLGDTKEGIASFF-E 278 (287)
T ss_pred ------------------HHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc---cccchHHHHHHHh-c
Confidence 34778888888888999999888777777777776666554444 5899999999999 9
Q ss_pred CCCCCCCCCC
Q 015492 362 KDFAPKWDPP 371 (406)
Q Consensus 362 k~r~P~w~~~ 371 (406)
| |+|.|+|.
T Consensus 279 k-rp~~~~h~ 287 (287)
T KOG1682|consen 279 K-RPPNWKHQ 287 (287)
T ss_pred c-CCCCcCCC
Confidence 9 99999973
No 89
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=100.00 E-value=2.7e-38 Score=288.86 Aligned_cols=190 Identities=29% Similarity=0.476 Sum_probs=173.6
Q ss_pred EEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHH
Q 015492 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNF 122 (406)
Q Consensus 43 v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 122 (406)
+.++++++|++|+||+|++.|++|.+|+.+|.++++.++.|+++++|||||.|+.||+|+|++++...... .+....+
T Consensus 1 i~~~~~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~--~~~~~~~ 78 (195)
T cd06558 1 VLVERDGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDA--GEEARAF 78 (195)
T ss_pred CEEEEECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccccc--chhHHHH
Confidence 45788899999999999989999999999999999999999999999999999999999999998753211 1135677
Q ss_pred HHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHH-HHHHh
Q 015492 123 FETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYLA 201 (406)
Q Consensus 123 ~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l~ 201 (406)
.+.++.++..+..++|||||+|||+|+|+|++++++||+||++++++|++||+++|++|++|+++++++++|.. +.+++
T Consensus 79 ~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~ 158 (195)
T cd06558 79 IRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELL 158 (195)
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999998 99999
Q ss_pred hcCCCcCHHHHHHcCccceeccCCChHHHHHHH
Q 015492 202 LTGEKLNGVEMIACGLATHYTLNGRLPLVEERV 234 (406)
Q Consensus 202 ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l 234 (406)
++|+.++|+||+++|||+++++.+++.+...++
T Consensus 159 l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~~ 191 (195)
T cd06558 159 LTGRRISAEEALELGLVDEVVPDEELLAAALEL 191 (195)
T ss_pred HcCCccCHHHHHHcCCCCeecChhHHHHHHHHH
Confidence 999999999999999999999998876555444
No 90
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=1.2e-37 Score=321.86 Aligned_cols=195 Identities=16% Similarity=0.171 Sum_probs=164.0
Q ss_pred CCCcEEEEEeCcEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHH-cCCCcEEEEEEcC-CCCcccCCChHH
Q 015492 39 LQDQVLVEGRAKSRAAILNRPS----------NLNALNTSMVGRLKRLYESWE-ENPDIGFVLMKGA-GRAFCSGGDVIA 106 (406)
Q Consensus 39 ~~~~v~~~~~~~v~~Itlnrp~----------~~Nal~~~~~~eL~~~l~~~~-~d~~v~~VVltg~-G~~F~~G~Dl~~ 106 (406)
.++.+.++++++|++||||||+ ++|+||.+|+.+|.++++.++ .|+++|+|||||. |++||+|+|+++
T Consensus 9 ~~~~v~~~~~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~ 88 (546)
T TIGR03222 9 QYRHWKLTFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFM 88 (546)
T ss_pred CCceEEEEeeCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHH
Confidence 3456899999999999999976 899999999999999999999 7899999999987 589999999998
Q ss_pred HHHhhhcCChhhHHHHH-HHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCC--eeEeccccc-ccccCC
Q 015492 107 LYQLLNEGKFEDFKNFF-ETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK--TVFSNPETQ-MGFHPD 182 (406)
Q Consensus 107 ~~~~~~~~~~~~~~~~~-~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~--a~f~~pe~~-~Gl~P~ 182 (406)
+..... ........+. .....+...+.++||||||+|||+|+|||++|+++||+||++++ ++|++||++ +|++|+
T Consensus 89 ~~~~~~-~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~ 167 (546)
T TIGR03222 89 LGLSTH-AWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPG 167 (546)
T ss_pred Hhcccc-chhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCc
Confidence 743110 0011111111 11223455677899999999999999999999999999999986 799999997 999999
Q ss_pred CchHHHHh--hcchHH-HHHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHH
Q 015492 183 AGASFYLS--HLPGYL-GEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERV 234 (406)
Q Consensus 183 ~g~~~~l~--r~~g~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l 234 (406)
+|++.++. +++|.. |++|++||+.++|+||++|||||+|||++++.+...++
T Consensus 168 ~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~l 222 (546)
T TIGR03222 168 TGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAER 222 (546)
T ss_pred cchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHH
Confidence 99998887 689998 99999999999999999999999999998887655544
No 91
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=8.8e-37 Score=316.42 Aligned_cols=197 Identities=16% Similarity=0.171 Sum_probs=164.2
Q ss_pred ccCCCcEEEEEeCcEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHHHH-cCCCcEEEEEEcCC-CCcccCCCh
Q 015492 37 DYLQDQVLVEGRAKSRAAILNRP-------S---NLNALNTSMVGRLKRLYESWE-ENPDIGFVLMKGAG-RAFCSGGDV 104 (406)
Q Consensus 37 ~~~~~~v~~~~~~~v~~Itlnrp-------~---~~Nal~~~~~~eL~~~l~~~~-~d~~v~~VVltg~G-~~F~~G~Dl 104 (406)
...++.+.++.+++|++|||||| + +.|+||.+|+.+|.++++.++ .|+++++|||||.+ ++||+|+|+
T Consensus 11 ~~~~~~~~~e~~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL 90 (550)
T PRK08184 11 PSQYRHWKLSFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANI 90 (550)
T ss_pred CCCCceEEEEeeCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCH
Confidence 34567899999999999999965 4 899999999999999999998 78999999999985 899999999
Q ss_pred HHHHHhhhcCChhhHHHHHHH-HHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCC--eeEeccccc-cccc
Q 015492 105 IALYQLLNEGKFEDFKNFFET-LYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK--TVFSNPETQ-MGFH 180 (406)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~--a~f~~pe~~-~Gl~ 180 (406)
+.+..... ........+... ...+...+.++||||||+|||+|+|||++|+++|||||++++ ++|++||++ +|++
T Consensus 91 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~ 169 (550)
T PRK08184 91 FMLGGSSH-AWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVL 169 (550)
T ss_pred HhHhcccc-chhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccC
Confidence 98743211 000011111111 122445677899999999999999999999999999999987 899999997 9999
Q ss_pred CCCchHHHHh--hcchHH-HHHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHH
Q 015492 181 PDAGASFYLS--HLPGYL-GEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERV 234 (406)
Q Consensus 181 P~~g~~~~l~--r~~g~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l 234 (406)
|++|++++++ +++|.. +++|++||+.++|+||+++||||++||++++.+...++
T Consensus 170 P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~ 226 (550)
T PRK08184 170 PGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAER 226 (550)
T ss_pred CCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHH
Confidence 9999999998 779998 99999999999999999999999999998876544444
No 92
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=99.84 E-value=5.8e-21 Score=160.32 Aligned_cols=115 Identities=51% Similarity=0.896 Sum_probs=98.4
Q ss_pred HHHHHHHHhcCcCCHHHHHHHHHhhhcccccHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 015492 265 RKIETIDKCFSHDTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGIS 344 (406)
Q Consensus 265 ~~~~~i~~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~ 344 (406)
.+...|++||+.+++++|+++|++ ..++|++++++.|.++||.|+++|.++++++...++.++++.|+.+..+++.
T Consensus 4 ~~~~~I~~~F~~~s~~eI~~~L~~----~~~~~a~~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~ 79 (118)
T PF13766_consen 4 EHLEAIDRCFSADSVEEIIEALEA----DGDEWAQKTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCMR 79 (118)
T ss_dssp HCHHHHHHHTTSSSHHHHHHHHHH----HS-HHHHHHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHc----cCcHHHHHHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhc
Confidence 346789999999999999999998 4679999999999999999999999999999999999999999999999985
Q ss_pred cCCCCcHHhhhhheeeCCCCCCCCCCCCcCCCCHHHHhcccC
Q 015492 345 KKVSNDFCEGIRARLVDKDFAPKWDPPSLADVSKDMVDCYFS 386 (406)
Q Consensus 345 ~~~s~d~~egi~afl~ek~r~P~w~~~~~~~v~~~~v~~~~~ 386 (406)
.+||.|||+|.||||++.|+|+++++++|++++|+.+|+
T Consensus 80 ---~~DF~EGVRA~LIDKd~~P~W~p~~l~~V~~~~V~~~f~ 118 (118)
T PF13766_consen 80 ---HPDFAEGVRALLIDKDKNPKWSPASLEDVSDEDVDSFFE 118 (118)
T ss_dssp ---CSCHHHHHHHHTTS-------SSSSCCCS-HHHHHHHCS
T ss_pred ---cchHHHHHHHHHhcCCCCCCCCCCChHHCCHHHHHHHhC
Confidence 899999999999999999999999999999999999985
No 93
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.78 E-value=4.5e-19 Score=159.93 Aligned_cols=142 Identities=15% Similarity=0.005 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEEEEcc
Q 015492 67 TSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDG 146 (406)
Q Consensus 67 ~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG 146 (406)
.-.+.+|.++++.+..|+++++|||++ +|.|+|+.... .+.+++..+..++|||||+|||
T Consensus 21 ~~~~~~l~~~l~~a~~d~~v~~vvl~~----~~~gg~~~~~~----------------~~~~~i~~~~~~~kpVia~v~G 80 (177)
T cd07014 21 NVSGDTTAAQIRDARLDPKVKAIVLRV----NSPGGSVTASE----------------VIRAELAAARAAGKPVVASGGG 80 (177)
T ss_pred CcCHHHHHHHHHHHhcCCCceEEEEEe----eCCCcCHHHHH----------------HHHHHHHHHHhCCCCEEEEECC
Confidence 345789999999999999999999997 58898876421 2334566677899999999999
Q ss_pred ccccccchhhccCCeEEEeCCeeEecccccccccCCCchHH--------HHhhcch--HH-HHHHhhcCCCcCHHHHHHc
Q 015492 147 ITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASF--------YLSHLPG--YL-GEYLALTGEKLNGVEMIAC 215 (406)
Q Consensus 147 ~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~--------~l~r~~g--~~-a~~l~ltG~~i~A~eA~~~ 215 (406)
.|.|+|+.|+++||+++++++++|+++.+..+..+...... .+++..| .. ..+++..|..++|++|++.
T Consensus 81 ~a~g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~ 160 (177)
T cd07014 81 NAASGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKAN 160 (177)
T ss_pred chhHHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHc
Confidence 99999999999999999999999999987766433222222 3444455 55 7888899999999999999
Q ss_pred CccceeccCCChH
Q 015492 216 GLATHYTLNGRLP 228 (406)
Q Consensus 216 GLv~~vv~~~~l~ 228 (406)
||||++.+.+++.
T Consensus 161 GLVD~v~~~~e~~ 173 (177)
T cd07014 161 GLVDSLGSFDDAV 173 (177)
T ss_pred CCcccCCCHHHHH
Confidence 9999999876653
No 94
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.78 E-value=1.3e-18 Score=158.35 Aligned_cols=145 Identities=15% Similarity=0.057 Sum_probs=115.9
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHH
Q 015492 52 RAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVY 131 (406)
Q Consensus 52 ~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 131 (406)
++|.++. .++..+...+.+.++.+..++ ++.|+|.=. |.|+++..-. .++.
T Consensus 2 ~vv~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~vvl~In----SpGG~v~~~~-------------------~i~~ 52 (187)
T cd07020 2 YVLEING-----AITPATADYLERAIDQAEEGG-ADALIIELD----TPGGLLDSTR-------------------EIVQ 52 (187)
T ss_pred EEEEEee-----EEChHHHHHHHHHHHHHHhCC-CCEEEEEEE----CCCCCHHHHH-------------------HHHH
Confidence 4566653 367777888999999888665 788888644 6666664311 2344
Q ss_pred HhccCCCcEEEEEc---cccccccchhhccCCeEEEeCCeeEecccccccccCCC--------------chHHHHhhcch
Q 015492 132 LQGTFVKPHVAILD---GITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDA--------------GASFYLSHLPG 194 (406)
Q Consensus 132 ~i~~~~kPvIAavn---G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~--------------g~~~~l~r~~g 194 (406)
.+..+||||||+|+ |+|.|||+.|+++||+++++++++|+.++...|..+.. +....+++..|
T Consensus 53 ~l~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G 132 (187)
T cd07020 53 AILASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRG 132 (187)
T ss_pred HHHhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 56679999999999 99999999999999999999999999999985554432 23456788888
Q ss_pred H--H-HHHHhhcCCCcCHHHHHHcCccceeccCC
Q 015492 195 Y--L-GEYLALTGEKLNGVEMIACGLATHYTLNG 225 (406)
Q Consensus 195 ~--~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~ 225 (406)
. . +.+++++|+.++|+||+++||||+++++.
T Consensus 133 ~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~ 166 (187)
T cd07020 133 RNAEWAEKAVRESLSLTAEEALKLGVIDLIAADL 166 (187)
T ss_pred CCHHHHHHHHHcCCeecHHHHHHcCCcccccCCH
Confidence 7 5 88999999999999999999999999885
No 95
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.61 E-value=2e-15 Score=139.96 Aligned_cols=144 Identities=16% Similarity=0.088 Sum_probs=103.2
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEEE
Q 015492 64 ALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAI 143 (406)
Q Consensus 64 al~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAa 143 (406)
..+...+.+|.++|+.+..|+++++|||+ .||.|+|+..+.. +.+.+..+..++|||||+
T Consensus 17 ~~~~~~~~~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~~~----------------~~~~l~~~~~~~kpVia~ 76 (211)
T cd07019 17 TQGNVGGDTTAAQIRDARLDPKVKAIVLR----VNSPGGSVTASEV----------------IRAELAAARAAGKPVVVS 76 (211)
T ss_pred CCCccCHHHHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHHHH----------------HHHHHHHHHhCCCCEEEE
Confidence 33455789999999999999999999997 7899999976431 223455677889999999
Q ss_pred EccccccccchhhccCCeEEEeCCeeEecccc------------cccccC---CCch--------------HHHHhhc--
Q 015492 144 LDGITMGCGAGISLQGMYRVVTDKTVFSNPET------------QMGFHP---DAGA--------------SFYLSHL-- 192 (406)
Q Consensus 144 vnG~a~GgG~~lal~cD~ria~~~a~f~~pe~------------~~Gl~P---~~g~--------------~~~l~r~-- 192 (406)
++|.|.|+|+.|+++||++++++.++|+.--+ ++|+-+ -.++ -..+...
T Consensus 77 v~g~a~s~gy~la~~aD~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~e~r~~~~~~ld 156 (211)
T cd07019 77 AGGAAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLGLQLSIE 156 (211)
T ss_pred ECCeehhHHHHHHHhCCEEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999988864321 223211 1100 0011111
Q ss_pred ---------------chHHHHHHhhcCCCcCHHHHHHcCccceeccCCCh
Q 015492 193 ---------------PGYLGEYLALTGEKLNGVEMIACGLATHYTLNGRL 227 (406)
Q Consensus 193 ---------------~g~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l 227 (406)
+.....+-...|..+++++|++.||||++..-++.
T Consensus 157 ~~~~~f~~~Va~~R~~~~~~l~~~~~~~~~~~~~A~~~GLvD~i~~~~~~ 206 (211)
T cd07019 157 NGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDA 206 (211)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHhcCCcEEeHHHHHHcCCcccCCCHHHH
Confidence 11112233456889999999999999998765443
No 96
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.52 E-value=6e-14 Score=124.37 Aligned_cols=134 Identities=16% Similarity=0.110 Sum_probs=102.7
Q ss_pred CCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEEEE
Q 015492 65 LNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAIL 144 (406)
Q Consensus 65 l~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav 144 (406)
++..++.+|.+.|+.++.|+++++|+|... |.|+|+... ..+...+..++||||+.+
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~----s~Gg~~~~~-------------------~~i~~~l~~~~kpvva~~ 64 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLEVN----TPGGRVDAG-------------------MNIVDALQASRKPVIAYV 64 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEEEE----CCCcCHHHH-------------------HHHHHHHHHhCCCEEEEE
Confidence 566889999999999999999999999774 778876532 123445566789999999
Q ss_pred ccccccccchhhccCCeEEEeCCeeEecccccccccCCCchH------HHH----hhc---------chHH-HHHHhhcC
Q 015492 145 DGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGAS------FYL----SHL---------PGYL-GEYLALTG 204 (406)
Q Consensus 145 nG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~------~~l----~r~---------~g~~-a~~l~ltG 204 (406)
+|.|.++|+.|+++||.|++.++++|++.....+.....+-. ..+ .+. .... ..+++..|
T Consensus 65 ~g~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~ 144 (161)
T cd00394 65 GGQAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKD 144 (161)
T ss_pred CChhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCC
Confidence 999999999999999999999999999988876653322000 011 111 1222 45667789
Q ss_pred CCcCHHHHHHcCcccee
Q 015492 205 EKLNGVEMIACGLATHY 221 (406)
Q Consensus 205 ~~i~A~eA~~~GLv~~v 221 (406)
..++|+||+++||||++
T Consensus 145 ~~~~a~eA~~~GLvD~i 161 (161)
T cd00394 145 LVLTAQEALEYGLVDAL 161 (161)
T ss_pred cEEcHHHHHHcCCcCcC
Confidence 99999999999999985
No 97
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.49 E-value=2.7e-13 Score=125.93 Aligned_cols=96 Identities=20% Similarity=0.174 Sum_probs=75.1
Q ss_pred cCCCCCCC-CCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhcc
Q 015492 57 NRPSNLNA-LNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGT 135 (406)
Q Consensus 57 nrp~~~Na-l~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 135 (406)
+++...|+ ++..++.+|.++|+.++.|+++++|||+. +|.|+++... ..+...+..+..
T Consensus 13 ~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~----~s~gg~~~~~----------------~~l~~~l~~~~~ 72 (214)
T cd07022 13 PRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI----DSPGGEVAGV----------------FELADAIRAARA 72 (214)
T ss_pred CCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE----eCCCCcHHHH----------------HHHHHHHHHHhc
Confidence 45555565 45689999999999999999999999975 4677765432 112223344444
Q ss_pred CCCcEEEEEccccccccchhhccCCeEEEeCCeeEecc
Q 015492 136 FVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNP 173 (406)
Q Consensus 136 ~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~p 173 (406)
+|||||+++|.|.|+|+.++++||++++++++.|+..
T Consensus 73 -~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~i 109 (214)
T cd07022 73 -GKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSI 109 (214)
T ss_pred -CCCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEee
Confidence 7999999999999999999999999999999988654
No 98
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.44 E-value=5e-13 Score=123.65 Aligned_cols=151 Identities=17% Similarity=0.128 Sum_probs=107.0
Q ss_pred EEEEEEcCCCCCCCCC---HHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHH
Q 015492 51 SRAAILNRPSNLNALN---TSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLY 127 (406)
Q Consensus 51 v~~Itlnrp~~~Nal~---~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~ 127 (406)
|++|.++.+ ++ ..++.+|.++|+.+..|+++++|||++. |.|+|+.... .+.
T Consensus 2 v~vi~i~g~-----i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~~----s~Gg~~~~~~----------------~i~ 56 (208)
T cd07023 2 IAVIDIEGT-----ISDGGGIGADSLIEQLRKAREDDSVKAVVLRIN----SPGGSVVASE----------------EIY 56 (208)
T ss_pred EEEEEEEEE-----EcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEE----CCCCCHHHHH----------------HHH
Confidence 556666643 33 6899999999999999999999999984 8899886421 123
Q ss_pred HHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccc------------cccccCCCc-----------
Q 015492 128 QFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPET------------QMGFHPDAG----------- 184 (406)
Q Consensus 128 ~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~------------~~Gl~P~~g----------- 184 (406)
+.+..+..++|||||+++|.|.|+|+.|+++||++++++.+.|+..-+ ++|+-+..-
T Consensus 57 ~~i~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~ 136 (208)
T cd07023 57 REIRRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSP 136 (208)
T ss_pred HHHHHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCC
Confidence 355667788999999999999999999999999999999998864322 133322110
Q ss_pred ---h----HHHHhhcc---------------h--HHHHHHhhcCCCcCHHHHHHcCccceeccCCC
Q 015492 185 ---A----SFYLSHLP---------------G--YLGEYLALTGEKLNGVEMIACGLATHYTLNGR 226 (406)
Q Consensus 185 ---~----~~~l~r~~---------------g--~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~ 226 (406)
. ...+..++ | .....-++.|..+++++|++.||||++...++
T Consensus 137 ~~~~s~~~~e~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~a~~A~~~gLiD~i~~~~~ 202 (208)
T cd07023 137 DRPLTEEERAILQALVDDIYDQFVDVVAEGRGMSGERLDKLADGRVWTGRQALELGLVDELGGLDD 202 (208)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcCCcEEEHHHHHHcCCCcccCCHHH
Confidence 0 01111111 1 11123346788999999999999999976444
No 99
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.42 E-value=7.4e-13 Score=139.73 Aligned_cols=157 Identities=18% Similarity=0.182 Sum_probs=115.3
Q ss_pred EeCcEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHH
Q 015492 47 GRAKSRAAILNRPS--NLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFE 124 (406)
Q Consensus 47 ~~~~v~~Itlnrp~--~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~ 124 (406)
.+++|++|+++.+= ..|..+....+.+.+.++.+..|++||+|||+-. |.|++.... .
T Consensus 306 ~~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrin----SpGGs~~as----------------e 365 (584)
T TIGR00705 306 VQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRIN----SPGGSVFAS----------------E 365 (584)
T ss_pred CCCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEec----CCCCCHHHH----------------H
Confidence 46789999998652 2344444455678888999999999999999976 455543221 1
Q ss_pred HHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeE------eccc------ccccccCCCchHHHHhh-
Q 015492 125 TLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVF------SNPE------TQMGFHPDAGASFYLSH- 191 (406)
Q Consensus 125 ~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f------~~pe------~~~Gl~P~~g~~~~l~r- 191 (406)
.+++.+..+...+||||+.++|.|.+||+.++++||.++|++.+.+ +.+. .++|+.|+...+..+..
T Consensus 366 ~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~ 445 (584)
T TIGR00705 366 IIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANV 445 (584)
T ss_pred HHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCC
Confidence 1222344455678999999999999999999999999999999876 5542 57888876555443321
Q ss_pred ---------------------------c------chHHHHHHhhcCCCcCHHHHHHcCccceecc
Q 015492 192 ---------------------------L------PGYLGEYLALTGEKLNGVEMIACGLATHYTL 223 (406)
Q Consensus 192 ---------------------------~------~g~~a~~l~ltG~~i~A~eA~~~GLv~~vv~ 223 (406)
. +...+.+.+.+|+.++|++|+++||||++..
T Consensus 446 s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig~ 510 (584)
T TIGR00705 446 SLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALGG 510 (584)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCCC
Confidence 1 2222567888999999999999999999953
No 100
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.42 E-value=6.5e-13 Score=117.78 Aligned_cols=128 Identities=16% Similarity=0.161 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEEEEccc
Q 015492 68 SMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGI 147 (406)
Q Consensus 68 ~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~ 147 (406)
.+.+.+.+.|+.+..++.+. +.|.+ .|+++.. ...+.+.+..++||||+.++|.
T Consensus 15 ~~~~~~~~~l~~~~~~~~i~-l~ins------pGG~~~~-------------------~~~i~~~i~~~~~pvi~~v~g~ 68 (160)
T cd07016 15 VTAKEFKDALDALGDDSDIT-VRINS------PGGDVFA-------------------GLAIYNALKRHKGKVTVKIDGL 68 (160)
T ss_pred cCHHHHHHHHHhccCCCCEE-EEEEC------CCCCHHH-------------------HHHHHHHHHhcCCCEEEEEcch
Confidence 56778888888887764433 33433 4444322 1235566677899999999999
Q ss_pred cccccchhhccCCeEEEeCCeeEecccccccccCCCc---------------hHHHHhhcch--HH-HHHHhhcCCCcCH
Q 015492 148 TMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAG---------------ASFYLSHLPG--YL-GEYLALTGEKLNG 209 (406)
Q Consensus 148 a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g---------------~~~~l~r~~g--~~-a~~l~ltG~~i~A 209 (406)
|.|+|+.++++||+|+++++++|++.....|..+... ....+.+..| .. ...++.++..++|
T Consensus 69 a~s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a 148 (160)
T cd07016 69 AASAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTA 148 (160)
T ss_pred HHhHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcH
Confidence 9999999999999999999999999777655544322 1223666677 45 6777777788999
Q ss_pred HHHHHcCcccee
Q 015492 210 VEMIACGLATHY 221 (406)
Q Consensus 210 ~eA~~~GLv~~v 221 (406)
+||+++||||+|
T Consensus 149 ~eA~~~GliD~v 160 (160)
T cd07016 149 QEAVELGFADEI 160 (160)
T ss_pred HHHHHcCCCCcC
Confidence 999999999985
No 101
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.33 E-value=9e-12 Score=115.17 Aligned_cols=149 Identities=13% Similarity=0.098 Sum_probs=101.8
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHH
Q 015492 51 SRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFV 130 (406)
Q Consensus 51 v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (406)
|++|+++.+ ++ ....+|.++|+.+..|+++++|||++. |.|+++.... .+.
T Consensus 2 v~vi~i~g~-----i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~----s~Gg~~~~~~-------------------~l~ 52 (207)
T TIGR00706 2 IAILPVSGA-----IA-VSPEDFDKKIKRIKDDKSIKALLLRIN----SPGGTVVASE-------------------EIY 52 (207)
T ss_pred EEEEEEEEE-----Ee-cCHHHHHHHHHHHhhCCCccEEEEEec----CCCCCHHHHH-------------------HHH
Confidence 556666543 22 335788899999999999999999985 7888875421 123
Q ss_pred HHhccCC--CcEEEEEccccccccchhhccCCeEEEeCCeeEeccccc------------ccccC--------------C
Q 015492 131 YLQGTFV--KPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQ------------MGFHP--------------D 182 (406)
Q Consensus 131 ~~i~~~~--kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~------------~Gl~P--------------~ 182 (406)
..+..++ |||||+++|.|.|+|+.|+++||.+++++++.++...+. +|+-+ .
T Consensus 53 ~~i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~ 132 (207)
T TIGR00706 53 EKLKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPT 132 (207)
T ss_pred HHHHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCC
Confidence 3344444 999999999999999999999999999999887663332 23311 0
Q ss_pred CchH----HHHh-----------------hcchHHHHHHhhcCCCcCHHHHHHcCccceeccCCChH
Q 015492 183 AGAS----FYLS-----------------HLPGYLGEYLALTGEKLNGVEMIACGLATHYTLNGRLP 228 (406)
Q Consensus 183 ~g~~----~~l~-----------------r~~g~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~ 228 (406)
...+ ..+. |-+.....+-++.|+.+++++|++.||||++...+++.
T Consensus 133 ~~~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~~~~~~~~~~~~A~~~gLvD~i~~~~~~~ 199 (207)
T TIGR00706 133 RELTPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKKFADGRVFTGRQALKLRLVDKLGTEDDAL 199 (207)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCCcccHHHHHHcCCCcccCCHHHHH
Confidence 0000 0111 11122222234678999999999999999998766553
No 102
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.27 E-value=3.5e-11 Score=108.41 Aligned_cols=140 Identities=17% Similarity=0.183 Sum_probs=101.7
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHH
Q 015492 52 RAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVY 131 (406)
Q Consensus 52 ~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 131 (406)
.+|.++. .++......|.++|+.+.+++ ++.||+.=. |.|+++... ..+..
T Consensus 2 ~vi~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~ivl~in----spGG~v~~~-------------------~~I~~ 52 (178)
T cd07021 2 YVIPIEG-----EIDPGLAAFVERALKEAKEEG-ADAVVLDID----TPGGRVDSA-------------------LEIVD 52 (178)
T ss_pred EEEEEee-----EECHHHHHHHHHHHHHHHhCC-CCeEEEEEE----CcCCCHHHH-------------------HHHHH
Confidence 4556653 367788888999999998876 677777655 566665432 23556
Q ss_pred HhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCch--------HHH------HhhcchHH-
Q 015492 132 LQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGA--------SFY------LSHLPGYL- 196 (406)
Q Consensus 132 ~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~--------~~~------l~r~~g~~- 196 (406)
.+..+++|||+.|+|.|.|+|+.++++||++++++++.|+.++.- +..|+ ... +.+.-|+.
T Consensus 53 ~l~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v----~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~ 128 (178)
T cd07021 53 LILNSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPI----PGDGNGAADEKVQSYWRAKMRAAAEKKGRDP 128 (178)
T ss_pred HHHhCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeE----cCCCccchhHHHHHHHHHHHHHHHHHhCCCH
Confidence 677899999999999999999999999999999999999998443 33322 111 22222332
Q ss_pred --HHHHhhcC-------------CCcCHHHHHHcCccceeccC
Q 015492 197 --GEYLALTG-------------EKLNGVEMIACGLATHYTLN 224 (406)
Q Consensus 197 --a~~l~ltG-------------~~i~A~eA~~~GLv~~vv~~ 224 (406)
+..|+--. -.++++||++.|++|.+.++
T Consensus 129 ~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~ 171 (178)
T cd07021 129 DIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGS 171 (178)
T ss_pred HHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECC
Confidence 44454433 27999999999999999876
No 103
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.18 E-value=1e-10 Score=109.24 Aligned_cols=142 Identities=14% Similarity=0.003 Sum_probs=101.0
Q ss_pred CCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEEEE
Q 015492 65 LNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAIL 144 (406)
Q Consensus 65 l~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav 144 (406)
-+..++.+|.+.|+++..|+++++|||+..+..| ++.++.++. +.+..+...+|||||.+
T Consensus 26 ~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el~-------------------~~i~~~~~~~kpVia~~ 85 (222)
T cd07018 26 SSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEELR-------------------QALERFRASGKPVIAYA 85 (222)
T ss_pred cCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHHH-------------------HHHHHHHHhCCeEEEEe
Confidence 3567788999999999999999999999987666 555555432 23344555789999999
Q ss_pred ccccccccchhhccCCeEEEeCCeeEeccccc------------ccccCC---------CchHHH-----------Hhhc
Q 015492 145 DGITMGCGAGISLQGMYRVVTDKTVFSNPETQ------------MGFHPD---------AGASFY-----------LSHL 192 (406)
Q Consensus 145 nG~a~GgG~~lal~cD~ria~~~a~f~~pe~~------------~Gl~P~---------~g~~~~-----------l~r~ 192 (406)
+| |.+||+.|+++||.+++.+.+.|+..-+. +|+-+. .+..+. +..+
T Consensus 86 ~~-~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~ 164 (222)
T cd07018 86 DG-YSQGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQAL 164 (222)
T ss_pred CC-CCchhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHH
Confidence 98 88999999999999999999998885432 222111 111110 0111
Q ss_pred -----------------chHHHHHHhhcCCCcCHHHHHHcCccceeccCCCh
Q 015492 193 -----------------PGYLGEYLALTGEKLNGVEMIACGLATHYTLNGRL 227 (406)
Q Consensus 193 -----------------~g~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l 227 (406)
+.....+-+..|..+++++|++.||||++...+++
T Consensus 165 l~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~~~~A~~~GLvD~i~~~~e~ 216 (222)
T cd07018 165 LDSLWDQYLADVAASRGLSPDALEALIDLGGDSAEEALEAGLVDGLAYRDEL 216 (222)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHCCCCCcCCcHHHH
Confidence 11111223345999999999999999999866554
No 104
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=98.79 E-value=5.7e-08 Score=86.84 Aligned_cols=136 Identities=13% Similarity=0.171 Sum_probs=100.2
Q ss_pred CCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEEEE
Q 015492 65 LNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAIL 144 (406)
Q Consensus 65 l~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav 144 (406)
++..+..-|.+.++.+.++ .++.|+|.=. |.|+.+... ..+...+...++||++.|
T Consensus 10 I~~~~~~~l~~~l~~A~~~-~~~~i~l~in----SPGG~v~~~-------------------~~I~~~i~~~~~pvv~~v 65 (172)
T cd07015 10 ITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADAA-------------------GNIVQRIQQSKIPVIIYV 65 (172)
T ss_pred ECHhHHHHHHHHHHHHhcC-CCCeEEEEEE----CCCCCHHHH-------------------HHHHHHHHhcCcCEEEEE
Confidence 6777888888999988765 5788888765 677766532 123455567899999999
Q ss_pred c---cccccccchhhccCCeEEEeCCeeEecccccccccCC----Cch----HHHH------hhcchH--H-HHHHhhcC
Q 015492 145 D---GITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPD----AGA----SFYL------SHLPGY--L-GEYLALTG 204 (406)
Q Consensus 145 n---G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~----~g~----~~~l------~r~~g~--~-a~~l~ltG 204 (406)
+ |.|..+|.-++++||.+++.+++.++....-.|..+. ..- ...+ .+.-|+ . +..++-..
T Consensus 66 ~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~ 145 (172)
T cd07015 66 YPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITKD 145 (172)
T ss_pred ecCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhh
Confidence 9 9999999999999999999999999998775432120 000 1111 122332 2 56677778
Q ss_pred CCcCHHHHHHcCccceeccC
Q 015492 205 EKLNGVEMIACGLATHYTLN 224 (406)
Q Consensus 205 ~~i~A~eA~~~GLv~~vv~~ 224 (406)
..++++||++.|++|.++.+
T Consensus 146 ~~lta~EA~~~G~iD~ia~~ 165 (172)
T cd07015 146 LSLTPEEALKYGVIEVVARD 165 (172)
T ss_pred cCcCHHHHHHcCCceeeeCC
Confidence 88999999999999999887
No 105
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.70 E-value=1.4e-07 Score=86.66 Aligned_cols=135 Identities=16% Similarity=0.044 Sum_probs=88.0
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEEE
Q 015492 64 ALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAI 143 (406)
Q Consensus 64 al~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAa 143 (406)
.++..+.+.+...|..++.++..+-|.+.=. |.|+|+.. ...++..+...+.|+++.
T Consensus 39 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~In----SpGG~v~~-------------------g~~I~d~i~~~~~~v~t~ 95 (200)
T PRK00277 39 EVEDHMANLIVAQLLFLEAEDPDKDIYLYIN----SPGGSVTA-------------------GLAIYDTMQFIKPDVSTI 95 (200)
T ss_pred EECHHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCcHHH-------------------HHHHHHHHHhcCCCEEEE
Confidence 3788899999999988876644444444333 45555432 112444566678899999
Q ss_pred EccccccccchhhccCC--eEEEeCCeeEecccccccccCCCchH------------------HHHhhcchH--H-HHHH
Q 015492 144 LDGITMGCGAGISLQGM--YRVVTDKTVFSNPETQMGFHPDAGAS------------------FYLSHLPGY--L-GEYL 200 (406)
Q Consensus 144 vnG~a~GgG~~lal~cD--~ria~~~a~f~~pe~~~Gl~P~~g~~------------------~~l~r~~g~--~-a~~l 200 (406)
+.|.|.++|..|+++++ .|++.++++|++....-|. .|-+ ..+....|. . ...+
T Consensus 96 ~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~---~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~ 172 (200)
T PRK00277 96 CIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGF---QGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKD 172 (200)
T ss_pred EEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 99999999999998743 5666666666654433221 1111 112222333 2 3445
Q ss_pred hhcCCCcCHHHHHHcCccceeccC
Q 015492 201 ALTGEKLNGVEMIACGLATHYTLN 224 (406)
Q Consensus 201 ~ltG~~i~A~eA~~~GLv~~vv~~ 224 (406)
+-.+..++|+||++.||||+|+..
T Consensus 173 ~~~~~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 173 TDRDNFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred hhCCccccHHHHHHcCCccEEeec
Confidence 556778999999999999999876
No 106
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=98.68 E-value=2.5e-07 Score=82.23 Aligned_cols=132 Identities=16% Similarity=0.097 Sum_probs=91.0
Q ss_pred CCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEEEE
Q 015492 65 LNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAIL 144 (406)
Q Consensus 65 l~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav 144 (406)
++..+..++.+.|..++.++.++.|+|.=. |.|+++.. ...++..+..+++|+++.+
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~In----SpGG~v~~-------------------~~~i~~~i~~~~~~v~~~~ 65 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEKDIYLYIN----SPGGDVFA-------------------GMAIYDTIKFIKADVVTII 65 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCCCEEEEEE----CCCCcHHH-------------------HHHHHHHHHhcCCCceEEE
Confidence 567888999999999998877777777655 66666532 1224455667889999999
Q ss_pred ccccccccchhhccCC--eEEEeCCeeEecccccccccCCCchHH-----------------HHhhcchH--H-HHHHhh
Q 015492 145 DGITMGCGAGISLQGM--YRVVTDKTVFSNPETQMGFHPDAGASF-----------------YLSHLPGY--L-GEYLAL 202 (406)
Q Consensus 145 nG~a~GgG~~lal~cD--~ria~~~a~f~~pe~~~Gl~P~~g~~~-----------------~l~r~~g~--~-a~~l~l 202 (406)
.|.|.++|.-|+++|| .|++.++++|.+....-|.. +.... .+.+..|. . ...++-
T Consensus 66 ~g~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~--g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~ 143 (162)
T cd07013 66 DGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTL--GDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLE 143 (162)
T ss_pred EeehhhHHHHHHHcCCCCcEEEecCEEEEEccCccccc--CCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHc
Confidence 9999999999999999 68888888887644322211 11110 11111232 1 244555
Q ss_pred cCCCcCHHHHHHcCcccee
Q 015492 203 TGEKLNGVEMIACGLATHY 221 (406)
Q Consensus 203 tG~~i~A~eA~~~GLv~~v 221 (406)
.+..++|+||+++||||++
T Consensus 144 ~~~~~sa~eA~~~GliD~i 162 (162)
T cd07013 144 RDTWLSAREAVEYGFADTI 162 (162)
T ss_pred CCccccHHHHHHcCCCCcC
Confidence 5666799999999999985
No 107
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.60 E-value=1.7e-08 Score=98.29 Aligned_cols=169 Identities=14% Similarity=-0.022 Sum_probs=138.2
Q ss_pred cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCC-CCcccCCChHHHHHhhhcCChhhHHHHHHHHHH
Q 015492 50 KSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQ 128 (406)
Q Consensus 50 ~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G-~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 128 (406)
++..+.|+ |+. |..|.++..+|..-++.+..+..+++.++|+.. +.|++|.|..+.... ........+.++.+
T Consensus 66 ~~~~~dmv-iea-v~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg----~h~fspa~~m~LlE 139 (380)
T KOG1683|consen 66 GFANADMV-IEA-VFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVG----MHFFSPAHWMQLLE 139 (380)
T ss_pred ccccccee-ccc-hhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhcc----ccccCHHHHHHHHH
Confidence 67778888 655 999999999999999999999999999999988 999999999887642 33444556677888
Q ss_pred HHHHhccCCCcEEEEEcccccccc--chhhccCCeEEEe--CCeeEecccccccccCCCchHHHHhhcchHH-HHHHhhc
Q 015492 129 FVYLQGTFVKPHVAILDGITMGCG--AGISLQGMYRVVT--DKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYLALT 203 (406)
Q Consensus 129 l~~~i~~~~kPvIAavnG~a~GgG--~~lal~cD~ria~--~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l~lt 203 (406)
++....+++.|+.+++||++--|| +-++.+|+|++.- ..-..+..+...++..+..-...+....|.. +-.-+--
T Consensus 140 ii~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d 219 (380)
T KOG1683|consen 140 IILALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALAD 219 (380)
T ss_pred HHHhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhh
Confidence 999999999999999999998888 9999999999997 4555588888888533333344444555666 5555667
Q ss_pred CCCcCHHHHHHcCccceeccC
Q 015492 204 GEKLNGVEMIACGLATHYTLN 224 (406)
Q Consensus 204 G~~i~A~eA~~~GLv~~vv~~ 224 (406)
|.-++..||++-|+++++.+.
T Consensus 220 ~~gfdv~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 220 GVGFDVAEALAVGLGDEIGPR 240 (380)
T ss_pred ccCccHHHHHhhccchhccch
Confidence 888999999999999999985
No 108
>PRK10949 protease 4; Provisional
Probab=98.58 E-value=6.3e-07 Score=95.19 Aligned_cols=159 Identities=16% Similarity=0.116 Sum_probs=102.3
Q ss_pred eCcEEEEEEcC-----CCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHH
Q 015492 48 RAKSRAAILNR-----PSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNF 122 (406)
Q Consensus 48 ~~~v~~Itlnr-----p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 122 (406)
.+.|++|.++. ....+.++. +.+.+.|+.+..|++||+|||+-. |.|+....
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrIn----SpGGs~~a---------------- 381 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVN----SPGGSVTA---------------- 381 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEec----CCCCcHHH----------------
Confidence 46677777763 222233444 456777888999999999999987 55554432
Q ss_pred HHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccc------------cccccCCCchH----
Q 015492 123 FETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPET------------QMGFHPDAGAS---- 186 (406)
Q Consensus 123 ~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~------------~~Gl~P~~g~~---- 186 (406)
.+.+++.+..+....|||||.+.|.|.-||.-++++||.++|.+.+..|...+ ++|+-.....+
T Consensus 382 se~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~ 461 (618)
T PRK10949 382 SEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLA 461 (618)
T ss_pred HHHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccC
Confidence 11222333444567899999999999999999999999999999765444222 23432211100
Q ss_pred -------------HHHhhc-----------------chHHHHHHhhcCCCcCHHHHHHcCccceeccCCChHH
Q 015492 187 -------------FYLSHL-----------------PGYLGEYLALTGEKLNGVEMIACGLATHYTLNGRLPL 229 (406)
Q Consensus 187 -------------~~l~r~-----------------~g~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~ 229 (406)
..+... +.....+-+..|+.+++++|++.||||++-.-++...
T Consensus 462 ~~~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v~~ia~Grv~tg~~A~~~GLVD~lG~~~~ai~ 534 (618)
T PRK10949 462 DVSITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVA 534 (618)
T ss_pred CccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhcCCcccHHHHHHcCCCccCCCHHHHHH
Confidence 001111 1111122345899999999999999999976555443
No 109
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.53 E-value=9.9e-07 Score=81.49 Aligned_cols=137 Identities=13% Similarity=0.004 Sum_probs=97.4
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEEE
Q 015492 64 ALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAI 143 (406)
Q Consensus 64 al~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAa 143 (406)
.++..+..++...|..++..+..+.|+|.=. |.|+++..- ..++..+..++.||++.
T Consensus 43 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~~g-------------------~~I~d~i~~~~~~v~t~ 99 (207)
T PRK12553 43 QVDDASANDVMAQLLVLESIDPDRDITLYIN----SPGGSVTAG-------------------DAIYDTIQFIRPDVQTV 99 (207)
T ss_pred eECHHHHHHHHHHHHHHHhCCCCCCEEEEEe----CCCCcHHHH-------------------HHHHHHHHhcCCCcEEE
Confidence 3789999999999999887654455544433 566665431 12455566778899999
Q ss_pred EccccccccchhhccCC--eEEEeCCeeEecccccc-cccCCCchH------------------HHHhhcchH--H-HHH
Q 015492 144 LDGITMGCGAGISLQGM--YRVVTDKTVFSNPETQM-GFHPDAGAS------------------FYLSHLPGY--L-GEY 199 (406)
Q Consensus 144 vnG~a~GgG~~lal~cD--~ria~~~a~f~~pe~~~-Gl~P~~g~~------------------~~l~r~~g~--~-a~~ 199 (406)
+.|.|.+.|.-|+++|| .|++.++++|.+-.... |. ..|-. ..+.+.-|. . ..+
T Consensus 100 ~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~--~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~ 177 (207)
T PRK12553 100 CTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGG--IRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRK 177 (207)
T ss_pred EEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCC--CccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999 59999999998876543 21 11211 112222333 2 455
Q ss_pred HhhcCCCcCHHHHHHcCccceeccCC
Q 015492 200 LALTGEKLNGVEMIACGLATHYTLNG 225 (406)
Q Consensus 200 l~ltG~~i~A~eA~~~GLv~~vv~~~ 225 (406)
++-.+..++|+||+++||||+|+++.
T Consensus 178 ~~~~~~~lta~EA~e~GliD~I~~~~ 203 (207)
T PRK12553 178 DTDRDKWLTAEEAKDYGLVDQIITSY 203 (207)
T ss_pred HHhcCccccHHHHHHcCCccEEcCch
Confidence 66678899999999999999998763
No 110
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=98.48 E-value=7.1e-07 Score=80.02 Aligned_cols=132 Identities=16% Similarity=0.056 Sum_probs=94.2
Q ss_pred CCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEEEE
Q 015492 65 LNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAIL 144 (406)
Q Consensus 65 l~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav 144 (406)
++.....++...+..+..++..+.|+|.=. |.|+|+..- ..+...+..++.|+++.+
T Consensus 18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~in----SpGG~v~~~-------------------~~i~~~l~~~~~~v~t~~ 74 (171)
T cd07017 18 IDDEVANLIIAQLLYLESEDPKKPIYLYIN----SPGGSVTAG-------------------LAIYDTMQYIKPPVSTIC 74 (171)
T ss_pred EcHHHHHHHHHHHHHHHccCCCCceEEEEE----CCCCCHHHH-------------------HHHHHHHHhcCCCEEEEE
Confidence 678888999999999888766566655544 556665431 123444556789999999
Q ss_pred ccccccccchhhccCC--eEEEeCCeeEecccccccccCCCchHHH-----------------HhhcchH--H-HHHHhh
Q 015492 145 DGITMGCGAGISLQGM--YRVVTDKTVFSNPETQMGFHPDAGASFY-----------------LSHLPGY--L-GEYLAL 202 (406)
Q Consensus 145 nG~a~GgG~~lal~cD--~ria~~~a~f~~pe~~~Gl~P~~g~~~~-----------------l~r~~g~--~-a~~l~l 202 (406)
.|.|.++|.-+++++| .|++.++++|.+.+...+..-. .... +....|. . ...++-
T Consensus 75 ~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~--~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~ 152 (171)
T cd07017 75 LGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQ--ASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTD 152 (171)
T ss_pred EeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhh
Confidence 9999999999999999 8999999999988766544222 1111 1111222 1 345555
Q ss_pred cCCCcCHHHHHHcCcccee
Q 015492 203 TGEKLNGVEMIACGLATHY 221 (406)
Q Consensus 203 tG~~i~A~eA~~~GLv~~v 221 (406)
.+..++|+||+++||||+|
T Consensus 153 ~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 153 RDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred CCccccHHHHHHcCCCccC
Confidence 7788999999999999986
No 111
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=98.38 E-value=1.4e-06 Score=78.88 Aligned_cols=143 Identities=19% Similarity=0.132 Sum_probs=92.5
Q ss_pred EEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHh
Q 015492 54 AILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQ 133 (406)
Q Consensus 54 Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i 133 (406)
|.|+.| ++.++...+...|..++.++..+-|.|.=. |.|+|+..- ..+...+
T Consensus 19 i~l~g~-----I~~~~~~~~~~~L~~l~~~~~~~~i~i~IN----SpGG~v~~g-------------------~~i~~~i 70 (182)
T PF00574_consen 19 IFLNGP-----IDEESANRLISQLLYLENEDKNKPINIYIN----SPGGDVDAG-------------------LAIYDAI 70 (182)
T ss_dssp EEEESS-----BSHHHHHHHHHHHHHHHHHTSSSEEEEEEE----ECEBCHHHH-------------------HHHHHHH
T ss_pred EEECCc-----cCHHHHHHHHHHHHHHhccCCCceEEEEEc----CCCCccHHH-------------------HHHHHHH
Confidence 455554 789999999988877743332222222212 566665431 2355667
Q ss_pred ccCCCcEEEEEccccccccchhhccCCe--EEEeCCeeEecccccccccCCCchHHH----Hh-----------hcchH-
Q 015492 134 GTFVKPHVAILDGITMGCGAGISLQGMY--RVVTDKTVFSNPETQMGFHPDAGASFY----LS-----------HLPGY- 195 (406)
Q Consensus 134 ~~~~kPvIAavnG~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~Gl~P~~g~~~~----l~-----------r~~g~- 195 (406)
..++.|+++.+.|.|.+.|.-++++||. |++.+++.|.+-+...+......-... +. ...|.
T Consensus 71 ~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~ 150 (182)
T PF00574_consen 71 RSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLS 150 (182)
T ss_dssp HHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred HhcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 7889999999999999999999999999 899999999998886655331111100 10 11121
Q ss_pred -H-HHHHhhcCCCcCHHHHHHcCccceeccC
Q 015492 196 -L-GEYLALTGEKLNGVEMIACGLATHYTLN 224 (406)
Q Consensus 196 -~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~ 224 (406)
. ..+++-...-++|+||+++||||+|+.+
T Consensus 151 ~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 151 KEEIEELMDRDTWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS
T ss_pred HHHHHHHHhCCccccHHHHHHcCCCCEeccC
Confidence 1 2334444556899999999999999864
No 112
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.36 E-value=4.8e-06 Score=76.31 Aligned_cols=134 Identities=15% Similarity=0.080 Sum_probs=90.6
Q ss_pred CCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEEEE
Q 015492 65 LNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAIL 144 (406)
Q Consensus 65 l~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav 144 (406)
++..+...+...|..++..+..+.|+|.=. |.|+++.. ...++..+..++.||++.|
T Consensus 32 I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~a-------------------g~aI~d~i~~~~~~V~t~v 88 (197)
T PRK14512 32 INKDLSELFQEKILLLEALDSKKPIFVYID----SEGGDIDA-------------------GFAIFNMIRFVKPKVFTIG 88 (197)
T ss_pred EcHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHHH-------------------HHHHHHHHHhCCCCEEEEE
Confidence 677888888888877776333344444433 55666532 1234555667889999999
Q ss_pred ccccccccchhhccCCe--EEEeCCeeEecccccccccCCCchHHH------------------HhhcchHH---HHHHh
Q 015492 145 DGITMGCGAGISLQGMY--RVVTDKTVFSNPETQMGFHPDAGASFY------------------LSHLPGYL---GEYLA 201 (406)
Q Consensus 145 nG~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~Gl~P~~g~~~~------------------l~r~~g~~---a~~l~ 201 (406)
.|.|.+.|.-|+++||- |++.++++|.+-...-|+. |.+.- +...-|.. ...++
T Consensus 89 ~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~---G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~ 165 (197)
T PRK14512 89 VGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFK---GVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDT 165 (197)
T ss_pred EeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccc---cCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhh
Confidence 99999999999999985 8999998887654432221 11110 11112221 23444
Q ss_pred hcCCCcCHHHHHHcCccceeccC
Q 015492 202 LTGEKLNGVEMIACGLATHYTLN 224 (406)
Q Consensus 202 ltG~~i~A~eA~~~GLv~~vv~~ 224 (406)
-....++|+||+++||||+|++.
T Consensus 166 ~~d~~lta~EA~~yGliD~I~~~ 188 (197)
T PRK14512 166 DRDFWLDSSSAVKYGLVFEVVET 188 (197)
T ss_pred hcCcccCHHHHHHcCCccEeecC
Confidence 45567999999999999999976
No 113
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=98.33 E-value=6.5e-06 Score=75.51 Aligned_cols=137 Identities=15% Similarity=0.038 Sum_probs=94.7
Q ss_pred CCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEEEE
Q 015492 65 LNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAIL 144 (406)
Q Consensus 65 l~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav 144 (406)
+|.++.+++...|-.++.++..+-|.+.=. |.|+|+.. ...++..+...+.||...+
T Consensus 39 i~~~~a~~ii~~ll~L~~~~~~~~I~l~IN----SpGG~v~~-------------------g~aIyd~m~~~~~~V~Tv~ 95 (200)
T CHL00028 39 VDDEIANQLIGLMVYLSIEDDTKDLYLFIN----SPGGSVIS-------------------GLAIYDTMQFVKPDVHTIC 95 (200)
T ss_pred ecHHHHHHHHHHHHHHhccCCCCCEEEEEe----CCCcchhh-------------------HHHHHHHHHhcCCCEEEEE
Confidence 899999999999988875543344444333 55555432 1235566778889999999
Q ss_pred ccccccccchhhccCC--eEEEeCCeeEecccccccccCCCchHH-----------------HHhhcchHH---HHHHhh
Q 015492 145 DGITMGCGAGISLQGM--YRVVTDKTVFSNPETQMGFHPDAGASF-----------------YLSHLPGYL---GEYLAL 202 (406)
Q Consensus 145 nG~a~GgG~~lal~cD--~ria~~~a~f~~pe~~~Gl~P~~g~~~-----------------~l~r~~g~~---a~~l~l 202 (406)
-|.|.+.|.-|++++| .|++.++++|.+.....|..-+ -++. .+...-|.. ..+++-
T Consensus 96 ~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G-~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~~ 174 (200)
T CHL00028 96 LGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEG-QASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDME 174 (200)
T ss_pred EEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhh
Confidence 9999999999999999 6999999999987765552211 1111 111112221 244444
Q ss_pred cCCCcCHHHHHHcCccceeccCC
Q 015492 203 TGEKLNGVEMIACGLATHYTLNG 225 (406)
Q Consensus 203 tG~~i~A~eA~~~GLv~~vv~~~ 225 (406)
....++|+||+++||||+|+.+.
T Consensus 175 r~~~lta~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 175 RDVFMSATEAKAYGIVDLVAVNN 197 (200)
T ss_pred cCccCCHHHHHHcCCCcEEeecC
Confidence 55679999999999999998764
No 114
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.28 E-value=2.4e-05 Score=74.32 Aligned_cols=138 Identities=14% Similarity=0.056 Sum_probs=94.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEE
Q 015492 62 LNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHV 141 (406)
Q Consensus 62 ~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvI 141 (406)
.-+++++-.....+.++.+.+. .+-+|-|.-.++++. |.+-. .......+.+++..+....+|+|
T Consensus 76 ~G~~~~~g~rKa~R~~~lA~~~-~lPvV~lvDtpGa~~-g~~aE-------------~~G~~~~ia~~~~~~s~~~VP~I 140 (256)
T PRK12319 76 FGQPHPEGYRKALRLMKQAEKF-GRPVVTFINTAGAYP-GVGAE-------------ERGQGEAIARNLMEMSDLKVPII 140 (256)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CHhHH-------------hccHHHHHHHHHHHHhCCCCCEE
Confidence 3567788888888888777644 466776665544442 33211 01123445566777788999999
Q ss_pred EEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchH-H-HHHHhhcCCCcCHHHHHHcCccc
Q 015492 142 AILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY-L-GEYLALTGEKLNGVEMIACGLAT 219 (406)
Q Consensus 142 AavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~-~-a~~l~ltG~~i~A~eA~~~GLv~ 219 (406)
+.|-|.|.|||+.....||++++.+++.++. .++-|++..+-+-... . +.+.+ .+++.++.+.|+||
T Consensus 141 sVI~G~~~gGgA~a~~~~D~v~m~~~a~~~v-------~~pe~~a~il~~~~~~a~~aa~~~----~~~a~~l~~~g~iD 209 (256)
T PRK12319 141 AIIIGEGGSGGALALAVADQVWMLENTMYAV-------LSPEGFASILWKDGSRATEAAELM----KITAGELLEMGVVD 209 (256)
T ss_pred EEEeCCcCcHHHHHhhcCCEEEEecCceEEE-------cCHHHHHHHHhcCcccHHHHHHHc----CCCHHHHHHCCCCc
Confidence 9999999999888888999999999887654 2334444444332122 2 33333 77999999999999
Q ss_pred eeccCC
Q 015492 220 HYTLNG 225 (406)
Q Consensus 220 ~vv~~~ 225 (406)
+|+++.
T Consensus 210 ~ii~e~ 215 (256)
T PRK12319 210 KVIPEH 215 (256)
T ss_pred EecCCC
Confidence 999864
No 115
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=98.27 E-value=1.3e-05 Score=73.10 Aligned_cols=136 Identities=15% Similarity=-0.002 Sum_probs=90.0
Q ss_pred CCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEEEE
Q 015492 65 LNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAIL 144 (406)
Q Consensus 65 l~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav 144 (406)
++..+..++...|..+..++..+-|++.=. |.|+|+.. ...++..+..++.|+...+
T Consensus 35 I~~~~~~~ii~~L~~l~~~~~~~~i~l~In----SpGG~v~~-------------------g~~I~d~l~~~~~~v~t~~ 91 (191)
T TIGR00493 35 VNDSVANLIVAQLLFLEAEDPEKDIYLYIN----SPGGSITA-------------------GLAIYDTMQFIKPDVSTIC 91 (191)
T ss_pred EChHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCCHHH-------------------HHHHHHHHHhcCCCEEEEE
Confidence 677888888888888876654444544433 55666532 1123444556667788888
Q ss_pred ccccccccchhhccCC--eEEEeCCeeEecccccccccCCCchH---------------HHHhhcchH--H-HHHHhhcC
Q 015492 145 DGITMGCGAGISLQGM--YRVVTDKTVFSNPETQMGFHPDAGAS---------------FYLSHLPGY--L-GEYLALTG 204 (406)
Q Consensus 145 nG~a~GgG~~lal~cD--~ria~~~a~f~~pe~~~Gl~P~~g~~---------------~~l~r~~g~--~-a~~l~ltG 204 (406)
.|.|.+.|.-|++++| .|++.++++|.+.+...|......-. ..+.+.-|. . ..+++-.+
T Consensus 92 ~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~ 171 (191)
T TIGR00493 92 IGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERD 171 (191)
T ss_pred EEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCC
Confidence 8999999999988766 69999999999866543321111111 012222333 2 34555667
Q ss_pred CCcCHHHHHHcCccceecc
Q 015492 205 EKLNGVEMIACGLATHYTL 223 (406)
Q Consensus 205 ~~i~A~eA~~~GLv~~vv~ 223 (406)
..++|+||+++||||+|+.
T Consensus 172 ~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 172 FFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred ccCcHHHHHHcCCccEEec
Confidence 7899999999999999875
No 116
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.26 E-value=3.6e-05 Score=74.94 Aligned_cols=140 Identities=11% Similarity=-0.001 Sum_probs=93.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEE
Q 015492 62 LNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHV 141 (406)
Q Consensus 62 ~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvI 141 (406)
.-+++++-+....+.++.++.. .+-+|-|.-++++++ |.+-.+ ......+.+.+..+....+|+|
T Consensus 132 ~G~~~p~g~rKa~Rlm~lA~~f-~lPIItlvDTpGA~~-G~~AE~-------------~G~~~aiar~l~~~a~~~VP~I 196 (322)
T CHL00198 132 FGMPSPGGYRKALRLMKHANKF-GLPILTFIDTPGAWA-GVKAEK-------------LGQGEAIAVNLREMFSFEVPII 196 (322)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcCc-CHHHHH-------------HhHHHHHHHHHHHHHcCCCCEE
Confidence 3567888888888888877654 466666655544444 322211 1123344556666778899999
Q ss_pred EEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHHHHHHhhcCCCcCHHHHHHcCcccee
Q 015492 142 AILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHY 221 (406)
Q Consensus 142 AavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~~l~ltG~~i~A~eA~~~GLv~~v 221 (406)
++|-|.|.|||+-....||++++.+++.++. .++-|++..|-+--.. |.+ +-..-+++|+++++.|+||+|
T Consensus 197 sVViGeggsGGAlal~~aD~V~m~e~a~~sV-------isPEg~a~Il~~d~~~-a~~-aA~~~~ita~dL~~~giiD~i 267 (322)
T CHL00198 197 CTIIGEGGSGGALGIGIGDSIMMLEYAVYTV-------ATPEACAAILWKDSKK-SLD-AAEALKITSEDLKVLGIIDEI 267 (322)
T ss_pred EEEeCcccHHHHHhhhcCCeEEEeCCeEEEe-------cCHHHHHHHHhcchhh-HHH-HHHHcCCCHHHHHhCCCCeEe
Confidence 9999999888866666699999999987764 3334444444333222 111 223458999999999999999
Q ss_pred ccCC
Q 015492 222 TLNG 225 (406)
Q Consensus 222 v~~~ 225 (406)
+|..
T Consensus 268 i~Ep 271 (322)
T CHL00198 268 IPEP 271 (322)
T ss_pred ccCC
Confidence 9853
No 117
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.20 E-value=0.0002 Score=71.68 Aligned_cols=137 Identities=11% Similarity=0.013 Sum_probs=91.8
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEE
Q 015492 63 NALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVA 142 (406)
Q Consensus 63 Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIA 142 (406)
-+++++-+....+.++.++.. .+-+|-|.-+++++ .|.+..+ ......+.+.+..+....+|+|+
T Consensus 200 G~~~peGyRKAlR~mklAekf-~lPIVtLVDTpGA~-pG~~AEe-------------~Gqa~aIAr~l~ams~l~VPiIS 264 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKF-GFPILTFVDTPGAY-AGIKAEE-------------LGQGEAIAFNLREMFGLRVPIIA 264 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcC-CCHHHHH-------------HhHHHHHHHHHHHHhcCCCCEEE
Confidence 467888888888888877654 46666665544443 2322221 12234455667778899999999
Q ss_pred EEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhc-chHH-HHHHhhcCCCcCHHHHHHcCccce
Q 015492 143 ILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHL-PGYL-GEYLALTGEKLNGVEMIACGLATH 220 (406)
Q Consensus 143 avnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~-~g~~-a~~l~ltG~~i~A~eA~~~GLv~~ 220 (406)
.|-|.+.|||+....+||++++.+++.++. .++-|++..|-+- .-.. +.+ ...++|+++++.|+||+
T Consensus 265 VViGeGgSGGAlalg~aD~VlMle~A~ysV-------isPEgaAsILwkd~~~A~eAAe----alkitA~dL~~~GiID~ 333 (431)
T PLN03230 265 TVIGEGGSGGALAIGCGNRMLMMENAVYYV-------ASPEACAAILWKSAAAAPKAAE----ALRITAAELVKLGVVDE 333 (431)
T ss_pred EEeCCCCcHHHHHhhcCCEEEEecCCEEEe-------cCHHHHHHHHhccccchHHHHH----HcCCCHHHHHhCCCCeE
Confidence 999999666655555789999999887544 3334444444332 2222 333 33899999999999999
Q ss_pred eccCC
Q 015492 221 YTLNG 225 (406)
Q Consensus 221 vv~~~ 225 (406)
|++..
T Consensus 334 II~Ep 338 (431)
T PLN03230 334 IVPEP 338 (431)
T ss_pred eccCC
Confidence 99863
No 118
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=98.19 E-value=4e-05 Score=81.06 Aligned_cols=139 Identities=12% Similarity=-0.007 Sum_probs=94.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEE
Q 015492 62 LNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHV 141 (406)
Q Consensus 62 ~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvI 141 (406)
.-++++.-+....+.++.+... .+-+|-|.-.+++++ |.+.... .....+.+.+..+....+|+|
T Consensus 220 fG~~~peGyRKAlRlmkLAekf-gLPIVtLVDTpGA~p-G~~AEe~-------------Gq~~aIArnl~amasl~VP~I 284 (762)
T PLN03229 220 FGMPTPHGYRKALRMMYYADHH-GFPIVTFIDTPGAYA-DLKSEEL-------------GQGEAIAHNLRTMFGLKVPIV 284 (762)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CchhHHH-------------hHHHHHHHHHHHHhCCCCCEE
Confidence 3467788888888888776644 466666655444443 3322221 223445566777889999999
Q ss_pred EEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHHHHHHhhcCCCcCHHHHHHcCcccee
Q 015492 142 AILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHY 221 (406)
Q Consensus 142 AavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~~l~ltG~~i~A~eA~~~GLv~~v 221 (406)
++|-|.|.|||+.....||+++|.++++++. .++-|++..+-+-... |.+ +-....++|++++++|+||+|
T Consensus 285 SVViGeggSGGAlA~g~aD~VlMle~A~~sV-------isPEgaAsILwkd~~~-A~e-AAe~lkiTa~dL~~lGiiD~I 355 (762)
T PLN03229 285 SIVIGEGGSGGALAIGCANKLLMLENAVFYV-------ASPEACAAILWKSAKA-APK-AAEKLRITAQELCRLQIADGI 355 (762)
T ss_pred EEEeCCcchHHHHHhhcCCEEEEecCCeEEe-------cCHHHHHHHHhcCccc-HHH-HHHHcCCCHHHHHhCCCCeee
Confidence 9999999888888778899999999876543 3444455444333222 111 233458999999999999999
Q ss_pred ccC
Q 015492 222 TLN 224 (406)
Q Consensus 222 v~~ 224 (406)
+|.
T Consensus 356 IpE 358 (762)
T PLN03229 356 IPE 358 (762)
T ss_pred ccC
Confidence 985
No 119
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.14 E-value=8.8e-05 Score=72.24 Aligned_cols=137 Identities=12% Similarity=0.020 Sum_probs=92.2
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEE
Q 015492 63 NALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVA 142 (406)
Q Consensus 63 Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIA 142 (406)
-+++++-.....+.++.++.- .+-+|-|.-.+++++ |.+..+ ....+.+.+++..+....+|+|+
T Consensus 130 G~~~p~g~rKa~R~m~lA~~f-~iPvVtlvDTpGa~~-g~~aE~-------------~G~~~aia~~l~a~s~~~VP~Is 194 (316)
T TIGR00513 130 GMPAPEGYRKALRLMKMAERF-KMPIITFIDTPGAYP-GIGAEE-------------RGQSEAIARNLREMARLGVPVIC 194 (316)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCCCC-CHHHHH-------------HHHHHHHHHHHHHHHcCCCCEEE
Confidence 567888888888888777643 466666655544433 332221 11234455667777889999999
Q ss_pred EEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchH-H-HHHHhhcCCCcCHHHHHHcCccce
Q 015492 143 ILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY-L-GEYLALTGEKLNGVEMIACGLATH 220 (406)
Q Consensus 143 avnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~-~-a~~l~ltG~~i~A~eA~~~GLv~~ 220 (406)
+|-|.|.|||+.....||++++.+++.++. +++-|++..+-+-... . +.+ -..+++.++.+.|+||+
T Consensus 195 VViGeggsGGAla~~~aD~v~m~~~a~~sV-------isPEg~a~Il~kd~~~a~~aae----~~~~ta~~l~~~G~iD~ 263 (316)
T TIGR00513 195 TVIGEGGSGGALAIGVGDKVNMLEYSTYSV-------ISPEGCAAILWKDASKAPKAAE----AMKITAPDLKELGLIDS 263 (316)
T ss_pred EEecccccHHHhhhccCCEEEEecCceEEe-------cCHHHHHHHhccchhhHHHHHH----HccCCHHHHHHCCCCeE
Confidence 999999877776555799999999887654 3444455444432211 1 333 25678999999999999
Q ss_pred eccCC
Q 015492 221 YTLNG 225 (406)
Q Consensus 221 vv~~~ 225 (406)
|+|..
T Consensus 264 II~ep 268 (316)
T TIGR00513 264 IIPEP 268 (316)
T ss_pred eccCC
Confidence 99853
No 120
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.09 E-value=8.5e-05 Score=72.46 Aligned_cols=140 Identities=12% Similarity=0.045 Sum_probs=95.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEE
Q 015492 62 LNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHV 141 (406)
Q Consensus 62 ~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvI 141 (406)
.-+++++-.....+.++.++.- .+-+|-|.-++++++ |.+-.+ ....+.+.+++..+....+|+|
T Consensus 129 ~G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDTpGa~~-G~~aE~-------------~G~~~aia~~l~~~a~~~VP~I 193 (319)
T PRK05724 129 FGMPRPEGYRKALRLMKMAEKF-GLPIITFIDTPGAYP-GIGAEE-------------RGQSEAIARNLREMARLKVPII 193 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCCCC-CHHHHh-------------ccHHHHHHHHHHHHhCCCCCEE
Confidence 3467888888888888776543 467777666555444 332211 1123445567777889999999
Q ss_pred EEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHHHHHHhhcCCCcCHHHHHHcCcccee
Q 015492 142 AILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHY 221 (406)
Q Consensus 142 AavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~~l~ltG~~i~A~eA~~~GLv~~v 221 (406)
++|-|.|.|||+.....||++++.+++.++ ++++-|++..+-+-... +.+..- ...+++.++.+.|+||+|
T Consensus 194 sVIiGeg~sGGAla~~~aD~v~m~~~A~~s-------visPEg~a~Il~~~~~~-a~~aae-~~~ita~~l~~~g~iD~I 264 (319)
T PRK05724 194 CTVIGEGGSGGALAIGVGDRVLMLEYSTYS-------VISPEGCASILWKDASK-APEAAE-AMKITAQDLKELGIIDEI 264 (319)
T ss_pred EEEeCCccHHHHHHHhccCeeeeecCceEe-------ecCHHHHHHHHhcCchh-HHHHHH-HcCCCHHHHHHCCCceEe
Confidence 999999988777666669999999887754 44555555555443222 222221 556899999999999999
Q ss_pred ccCC
Q 015492 222 TLNG 225 (406)
Q Consensus 222 v~~~ 225 (406)
++..
T Consensus 265 I~Ep 268 (319)
T PRK05724 265 IPEP 268 (319)
T ss_pred ccCC
Confidence 9853
No 121
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.08 E-value=6.7e-05 Score=69.73 Aligned_cols=138 Identities=9% Similarity=-0.013 Sum_probs=89.5
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEEE
Q 015492 64 ALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAI 143 (406)
Q Consensus 64 al~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAa 143 (406)
.++..+.+.+...|..++..+.-+-|.+.=. |.|+++.. ...++..+...+.||...
T Consensus 62 ~Idd~~a~~i~aqLl~L~~~~~~~~I~lyIN----SpGGsv~a-------------------GlaIyd~m~~~~~~V~tv 118 (221)
T PRK14514 62 QIDDYTANTIQAQLLYLDSVDPGKDISIYIN----SPGGSVYA-------------------GLGIYDTMQFISSDVATI 118 (221)
T ss_pred EEcHHHHHHHHHHHHHHhccCCCCCEEEEEE----CCCcchhh-------------------HHHHHHHHHhcCCCEEEE
Confidence 3788888888887766654332232322222 44554432 112455667788899999
Q ss_pred EccccccccchhhccCCe--EEEeCCeeEecccccccccCCCchHH---------------HHhhcchHH---HHHHhhc
Q 015492 144 LDGITMGCGAGISLQGMY--RVVTDKTVFSNPETQMGFHPDAGASF---------------YLSHLPGYL---GEYLALT 203 (406)
Q Consensus 144 vnG~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~Gl~P~~g~~~---------------~l~r~~g~~---a~~l~lt 203 (406)
+-|.|.+.|.-|++++|. |++.++++|.+-...-|......-.. .+.+..|.. ..+.+-.
T Consensus 119 ~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~r 198 (221)
T PRK14514 119 CTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSDR 198 (221)
T ss_pred EEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhc
Confidence 999999999999999996 89999999988766544321111000 011122322 2444555
Q ss_pred CCCcCHHHHHHcCccceeccC
Q 015492 204 GEKLNGVEMIACGLATHYTLN 224 (406)
Q Consensus 204 G~~i~A~eA~~~GLv~~vv~~ 224 (406)
...++|+||+++||||+|+..
T Consensus 199 d~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 199 DYWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred CccCCHHHHHHcCCccEEeec
Confidence 677999999999999999864
No 122
>PRK11778 putative inner membrane peptidase; Provisional
Probab=98.05 E-value=4.6e-05 Score=74.84 Aligned_cols=156 Identities=10% Similarity=0.012 Sum_probs=94.8
Q ss_pred eCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHH
Q 015492 48 RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLY 127 (406)
Q Consensus 48 ~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~ 127 (406)
.+.|++|.++.+=..+ -...+..++...+..+..+ .+|||.-. |.|+.+..... ...
T Consensus 89 ~~~v~VI~~~G~I~~~-~~~~l~e~i~a~l~~A~~~---~aVvLrid----SpGG~v~~s~~------------a~~--- 145 (330)
T PRK11778 89 KPRLFVLDFKGDIDAS-EVESLREEITAILAVAKPG---DEVLLRLE----SPGGVVHGYGL------------AAS--- 145 (330)
T ss_pred CCeEEEEEEEEEECCC-cchhhHHHHHHHHHhccCC---CeEEEEEe----CCCCchhHHHH------------HHH---
Confidence 4678888887542111 1123445555555544432 57888876 56665543111 011
Q ss_pred HHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEeccccc------------ccccCC---------Cc--
Q 015492 128 QFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQ------------MGFHPD---------AG-- 184 (406)
Q Consensus 128 ~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~------------~Gl~P~---------~g-- 184 (406)
.+.++....||+|+.+++.|.-||+.++++||.++|.+.+.++...+- +|+-+. .+
T Consensus 146 -~l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~p 224 (330)
T PRK11778 146 -QLQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTL 224 (330)
T ss_pred -HHHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCC
Confidence 123345678999999999999999999999999999998876654432 222100 00
Q ss_pred ---hH----HHHhhcc---------------hHHHHHHhhcCCCcCHHHHHHcCccceeccCCCh
Q 015492 185 ---AS----FYLSHLP---------------GYLGEYLALTGEKLNGVEMIACGLATHYTLNGRL 227 (406)
Q Consensus 185 ---~~----~~l~r~~---------------g~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l 227 (406)
.+ ..+...+ +....+-+.+|+.++|++|++.||||++...+++
T Consensus 225 f~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~ 289 (330)
T PRK11778 225 FGENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDY 289 (330)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHH
Confidence 00 0011111 1111233458999999999999999999876665
No 123
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=98.05 E-value=0.00019 Score=68.68 Aligned_cols=150 Identities=11% Similarity=0.050 Sum_probs=95.2
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcC----CCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHH
Q 015492 51 SRAAILNRPSNLNALNTSMVGRLKRLYESWEEN----PDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETL 126 (406)
Q Consensus 51 v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d----~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 126 (406)
|.++-.+..-..-+++...-..+..+++.+..| ..+.+|.|.-.|+ .-+.+-. ..+..+.+.+
T Consensus 61 v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgG-----aRlqEg~--------~~L~~~a~i~ 127 (274)
T TIGR03133 61 VVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGG-----VRLQEAN--------AGLIAIAEIM 127 (274)
T ss_pred EEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCC-----cChhhhH--------HHHHHHHHHH
Confidence 444444444455678888888899998888752 2244676665443 3333211 1111122212
Q ss_pred HHHHHHhccCCCcEEEEEccc--cccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchH--H-HHHHh
Q 015492 127 YQFVYLQGTFVKPHVAILDGI--TMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY--L-GEYLA 201 (406)
Q Consensus 127 ~~l~~~i~~~~kPvIAavnG~--a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~--~-a~~l~ 201 (406)
..+..+... .|+|+.+.|+ |.||+..++.+||++|+++++++++. +...+....|. . ..+-.
T Consensus 128 -~~~~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~a-----------GP~VIe~~~G~e~~~~~d~~ 194 (274)
T TIGR03133 128 -RAILDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLS-----------GPEVIEQEAGVEEFDSRDRA 194 (274)
T ss_pred -HHHHHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEecc-----------CHHHHHHhcCCCccCHHHhc
Confidence 222333444 9999999999 89999999999999999998877763 22223333331 2 44445
Q ss_pred hcCCCcCHHHHHHcCccceeccCCC
Q 015492 202 LTGEKLNGVEMIACGLATHYTLNGR 226 (406)
Q Consensus 202 ltG~~i~A~eA~~~GLv~~vv~~~~ 226 (406)
|..+.+.+......|++|.+++++.
T Consensus 195 l~~~~lGG~~~~~sG~~D~~v~dd~ 219 (274)
T TIGR03133 195 LVWRTTGGKHRFLSGDADVLVEDDV 219 (274)
T ss_pred ccccccchHhHhhcccceEEeCCHH
Confidence 5556677778888999999999854
No 124
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.05 E-value=2.6e-05 Score=76.79 Aligned_cols=134 Identities=17% Similarity=0.158 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEEEEccccc
Q 015492 70 VGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITM 149 (406)
Q Consensus 70 ~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~ 149 (406)
.+.+.+.|+.+..|+++++|+|.=. |.|+....- ..+++.++++..-. ||++.|++.|.
T Consensus 82 ~~~~~~~l~~~~~~~~vk~vvL~in----SPGG~v~as----------------~~i~~~l~~l~~~~-PV~v~v~~~AA 140 (317)
T COG0616 82 GDDIEEILRAARADPSVKAVVLRIN----SPGGSVVAS----------------ELIARALKRLRAKK-PVVVSVGGYAA 140 (317)
T ss_pred HHHHHHHHHHHhcCCCCceEEEEEE----CcCCchhHH----------------HHHHHHHHHHhhcC-CEEEEECCeec
Confidence 4555666788889999999999876 667665421 12333444444444 99999999999
Q ss_pred cccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhh---------------------------------cc---
Q 015492 150 GCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSH---------------------------------LP--- 193 (406)
Q Consensus 150 GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r---------------------------------~~--- 193 (406)
-||..++++||.+||++.+..|---+..+. |.. ...+.+ .+
T Consensus 141 SGGY~IA~aAd~I~a~p~si~GSIGVi~~~-~~~--~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~ 217 (317)
T COG0616 141 SGGYYIALAADKIVADPSSITGSIGVISGA-PNF--EELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDET 217 (317)
T ss_pred chhhhhhccCCEEEecCCceeeeceeEEec-CCH--HHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHH
Confidence 999999999999999998876654443331 111 111110 00
Q ss_pred ------------h-HH-HHHHhhcCCCcCHHHHHHcCccceeccCCCh
Q 015492 194 ------------G-YL-GEYLALTGEKLNGVEMIACGLATHYTLNGRL 227 (406)
Q Consensus 194 ------------g-~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l 227 (406)
+ .. ...-+.+|+-+++++|++.||||++-..++.
T Consensus 218 y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~a 265 (317)
T COG0616 218 YDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDA 265 (317)
T ss_pred HHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHH
Confidence 0 11 2234558899999999999999999765443
No 125
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.01 E-value=6.4e-05 Score=68.93 Aligned_cols=139 Identities=16% Similarity=0.100 Sum_probs=92.9
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEEE
Q 015492 64 ALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAI 143 (406)
Q Consensus 64 al~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAa 143 (406)
.++.++.+.+...|-.++..+.-+-|.+.=. |.|+|+.. ...++..+...+.||...
T Consensus 35 ~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~IN----SpGG~v~~-------------------GlaIyd~m~~~~~~V~Ti 91 (201)
T PRK14513 35 PIESQMANTIVAQLLLLDSQNPEQEIQMYIN----CPGGEVYA-------------------GLAIYDTMRYIKAPVSTI 91 (201)
T ss_pred EEcHHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCchhh-------------------HHHHHHHHHhcCCCEEEE
Confidence 4788888888888777765433222222222 55555432 123556677788899999
Q ss_pred EccccccccchhhccCCe--EEEeCCeeEecccccccccCCCchHHHH-----------------hhcchHH---HHHHh
Q 015492 144 LDGITMGCGAGISLQGMY--RVVTDKTVFSNPETQMGFHPDAGASFYL-----------------SHLPGYL---GEYLA 201 (406)
Q Consensus 144 vnG~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~Gl~P~~g~~~~l-----------------~r~~g~~---a~~l~ 201 (406)
+.|.|.+.|.-|++++|- |++.+++++.+.....|.. +...... .+..|.. -.+++
T Consensus 92 ~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~--G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~~ 169 (201)
T PRK14513 92 CVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR--GNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDM 169 (201)
T ss_pred EEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh
Confidence 999999999999999995 9999999998877655531 1122211 1122321 23344
Q ss_pred hcCCCcCHHHHHHcCccceeccCCCh
Q 015492 202 LTGEKLNGVEMIACGLATHYTLNGRL 227 (406)
Q Consensus 202 ltG~~i~A~eA~~~GLv~~vv~~~~l 227 (406)
-....++|+||+++||||+|+++.+.
T Consensus 170 ~rd~~msa~EA~eyGliD~I~~~~~~ 195 (201)
T PRK14513 170 ERDYFMSPEEAKAYGLIDSVIEPTRV 195 (201)
T ss_pred ccCcccCHHHHHHcCCCcEEeccCCC
Confidence 44566999999999999999987553
No 126
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=97.99 E-value=9.3e-05 Score=67.70 Aligned_cols=140 Identities=13% Similarity=-0.005 Sum_probs=93.3
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEEE
Q 015492 64 ALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAI 143 (406)
Q Consensus 64 al~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAa 143 (406)
.++.++.+++...|..++.++..+-|.+.=. |.|+++.. ...++..+..++.||...
T Consensus 33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~IN----SpGG~v~~-------------------g~aIyd~m~~~~~~V~t~ 89 (196)
T PRK12551 33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYIN----SPGGSVYD-------------------GLGIFDTMQHVKPDVHTV 89 (196)
T ss_pred eecHHHHHHHHHHHHHhhccCCCCCEEEEEe----CCCcchhh-------------------HHHHHHHHHhcCCCEEEE
Confidence 3889999999999988876543344444333 55666542 113455566788899999
Q ss_pred EccccccccchhhccCCe--EEEeCCeeEecccccccccCCCchHH---------------HHhhcchHH---HHHHhhc
Q 015492 144 LDGITMGCGAGISLQGMY--RVVTDKTVFSNPETQMGFHPDAGASF---------------YLSHLPGYL---GEYLALT 203 (406)
Q Consensus 144 vnG~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~Gl~P~~g~~~---------------~l~r~~g~~---a~~l~lt 203 (406)
+.|.|.+.|.-|++++|- |++.++++|.+-....|..-...-.. .+.+..|.. ..+++-.
T Consensus 90 ~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~r 169 (196)
T PRK12551 90 CVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDR 169 (196)
T ss_pred EEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhc
Confidence 999999999999999985 88999999888665433211111010 011122321 2344444
Q ss_pred CCCcCHHHHHHcCccceeccCCC
Q 015492 204 GEKLNGVEMIACGLATHYTLNGR 226 (406)
Q Consensus 204 G~~i~A~eA~~~GLv~~vv~~~~ 226 (406)
...++|+||+++||||+|++...
T Consensus 170 d~~msa~EA~eyGliD~I~~~~~ 192 (196)
T PRK12551 170 DFFMSPSEAVEYGLIDLVIDKRP 192 (196)
T ss_pred CcCCCHHHHHHcCCCcEEeccCC
Confidence 56799999999999999998643
No 127
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=97.89 E-value=0.0012 Score=62.26 Aligned_cols=157 Identities=10% Similarity=-0.049 Sum_probs=93.9
Q ss_pred EeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHH-HcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHH
Q 015492 47 GRAKSRAAILNRPSNLNALNTSMVGRLKRLYESW-EENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFET 125 (406)
Q Consensus 47 ~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~-~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~ 125 (406)
.+|.-..|.=|.|.. .++.+-...+...+... +.+..+-+|.|.-.. .|-.|.. .+.....+.
T Consensus 29 l~G~~V~vIa~~~~~--~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtp-G~~~g~~-------------aE~~G~~~a 92 (238)
T TIGR03134 29 LAGGKVTVIGVVPDA--EVGLDEALALAQAVLDVIEADDKRPIVVLVDTP-SQAYGRR-------------EELLGINQA 92 (238)
T ss_pred ECCEEEEEEEECCCC--cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCC-CCCCCHH-------------HHHHHHHHH
Confidence 345444444566643 78888888888888775 445667777665542 2222222 122222333
Q ss_pred HHHHHHHh---ccCCCcEEEEEccccccccchhh-ccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHHHHHHh
Q 015492 126 LYQFVYLQ---GTFVKPHVAILDGITMGCGAGIS-LQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLA 201 (406)
Q Consensus 126 ~~~l~~~i---~~~~kPvIAavnG~a~GgG~~la-l~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~~l~ 201 (406)
+.++++.+ ...+.|+|+.|-|.++|||+.-. +.+|.++|.+++ .++..++-+++..+.+-... ..++.
T Consensus 93 ~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A-------~i~vm~~e~aa~I~~~~~~~-~~e~a 164 (238)
T TIGR03134 93 LAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGA-------MVHVMDLESMARVTKRSVEE-LEALA 164 (238)
T ss_pred HHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCc-------EEEecCHHHHHHHHccCHhH-HHHHH
Confidence 34344444 45669999999999998765433 347877776555 45565666665555544332 22222
Q ss_pred hc--CCCcCHHHHHHcCccceeccCCCh
Q 015492 202 LT--GEKLNGVEMIACGLATHYTLNGRL 227 (406)
Q Consensus 202 lt--G~~i~A~eA~~~GLv~~vv~~~~l 227 (406)
-+ -...+.+.+.++|+||+|+++.+-
T Consensus 165 ~~~~~~a~~~~~~~~~G~vd~vi~~~~~ 192 (238)
T TIGR03134 165 KSSPVFAPGIENFVKLGGVHALLDVADA 192 (238)
T ss_pred HhhhhhccCHHHHHhCCCccEEeCCCCc
Confidence 11 124577789999999999997664
No 128
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=97.78 E-value=0.00037 Score=67.56 Aligned_cols=150 Identities=13% Similarity=0.074 Sum_probs=92.6
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCC----CcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHH
Q 015492 51 SRAAILNRPSNLNALNTSMVGRLKRLYESWEENP----DIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETL 126 (406)
Q Consensus 51 v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~----~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 126 (406)
|.++-.+..-..-+++......+..+++.+.++. -+.+|+|.-.|+. -+.+-. .....+.+.
T Consensus 70 v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGa-----RlqEg~--------~~L~~~a~i- 135 (301)
T PRK07189 70 VVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGV-----RLQEAN--------AGLAAIAEI- 135 (301)
T ss_pred EEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCc-----CccchH--------HHHHHHHHH-
Confidence 4555555444567888889999999998887665 2667777665433 332210 011111111
Q ss_pred HHHHHHhccCCCcEEEEEccc--cccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchH--H-HHHHh
Q 015492 127 YQFVYLQGTFVKPHVAILDGI--TMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY--L-GEYLA 201 (406)
Q Consensus 127 ~~l~~~i~~~~kPvIAavnG~--a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~--~-a~~l~ 201 (406)
...+..+... +|+|+.+.|+ |+||+...+.+||++|+++++++++. +...+....|. . ..+..
T Consensus 136 ~~~~~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igla-----------GP~VIe~~~G~e~~d~~d~~ 203 (301)
T PRK07189 136 MRAIVDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLS-----------GPEVIEQEAGVEEFDSRDRA 203 (301)
T ss_pred HHHHHHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEecc-----------CHHHHHHhcCCcccCHHHhc
Confidence 2222233444 9999999999 99999999999999999998887763 12222222221 1 33333
Q ss_pred hcCCCcCHHHHHHcCccceeccCCC
Q 015492 202 LTGEKLNGVEMIACGLATHYTLNGR 226 (406)
Q Consensus 202 ltG~~i~A~eA~~~GLv~~vv~~~~ 226 (406)
+..+.+.+......|++|.+++++.
T Consensus 204 ~vw~~lGG~h~~~sG~~D~~v~dd~ 228 (301)
T PRK07189 204 LVWRTTGGKHRYLSGLADALVDDDV 228 (301)
T ss_pred ccccccCcceeeecccceEEeCCHH
Confidence 3333334444556899999998864
No 129
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=97.69 E-value=0.00052 Score=65.03 Aligned_cols=96 Identities=19% Similarity=0.164 Sum_probs=75.9
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEE
Q 015492 63 NALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVA 142 (406)
Q Consensus 63 Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIA 142 (406)
+.++.+....+.++++....+..+-.+ |. +.|+++.. ..++...+.+.+.++++
T Consensus 70 ~~I~i~dse~v~raI~~~~~~~~IdLi-i~------TpGG~v~A-------------------A~~I~~~l~~~~~~v~v 123 (285)
T PF01972_consen 70 RYIDIDDSEFVLRAIREAPKDKPIDLI-IH------TPGGLVDA-------------------AEQIARALREHPAKVTV 123 (285)
T ss_pred eeEcHhhHHHHHHHHHhcCCCCceEEE-EE------CCCCcHHH-------------------HHHHHHHHHhCCCCEEE
Confidence 568889999999999887766655333 32 44555432 12345566788999999
Q ss_pred EEccccccccchhhccCCeEEEeCCeeEecccccccccCCCc
Q 015492 143 ILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAG 184 (406)
Q Consensus 143 avnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g 184 (406)
.|++.|+.+|.-++++||-+++.+.+.+|--+.++|-.|..+
T Consensus 124 ~VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~s 165 (285)
T PF01972_consen 124 IVPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAAS 165 (285)
T ss_pred EECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChHH
Confidence 999999999999999999999999999999999999888643
No 130
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.67 E-value=0.0012 Score=63.93 Aligned_cols=152 Identities=11% Similarity=0.051 Sum_probs=95.3
Q ss_pred EeCcEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHH
Q 015492 47 GRAKSRAAILNRPS-NLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFET 125 (406)
Q Consensus 47 ~~~~v~~Itlnrp~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~ 125 (406)
.+|.-..|.-|.+. ..-+++....+.+.++++.+... .+-+|.|...|+ +.+.+ + ...+.++ ..
T Consensus 118 I~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsgG-----armqE-------g-i~sL~~~-ak 182 (292)
T PRK05654 118 IEGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASGG-----ARMQE-------G-LLSLMQM-AK 182 (292)
T ss_pred ECCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCC-----cchhh-------h-hhHHHhH-HH
Confidence 45544444455554 66789999999999999887655 477888886553 32221 0 1111111 12
Q ss_pred HHHHHHHhccCCCcEEEEEccccccccc-hhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHHHHHHhhcC
Q 015492 126 LYQFVYLQGTFVKPHVAILDGITMGCGA-GISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTG 204 (406)
Q Consensus 126 ~~~l~~~i~~~~kPvIAavnG~a~GgG~-~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~~l~ltG 204 (406)
....+.++.....|.|+++.|+|.||+. ..++.+|++||.+++.+++-.. ..+...+| .++ .-
T Consensus 183 ~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGp-----------rvie~~~~---e~l--pe 246 (292)
T PRK05654 183 TSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGP-----------RVIEQTVR---EKL--PE 246 (292)
T ss_pred HHHHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCH-----------HHHHhhhh---hhh--hh
Confidence 2223344556789999999999999964 4577799999999888777322 11111111 111 11
Q ss_pred CCcCHHHHHHcCccceeccCCChHH
Q 015492 205 EKLNGVEMIACGLATHYTLNGRLPL 229 (406)
Q Consensus 205 ~~i~A~eA~~~GLv~~vv~~~~l~~ 229 (406)
+.-+++-+.+.|+||.|+++.++..
T Consensus 247 ~~~~ae~~~~~G~vD~Vv~~~e~r~ 271 (292)
T PRK05654 247 GFQRAEFLLEHGAIDMIVHRRELRD 271 (292)
T ss_pred hhcCHHHHHhCCCCcEEECHHHHHH
Confidence 1225666778999999999988754
No 131
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.66 E-value=0.0013 Score=63.48 Aligned_cols=152 Identities=9% Similarity=0.032 Sum_probs=94.7
Q ss_pred EeCcEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHH
Q 015492 47 GRAKSRAAILNRP-SNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFET 125 (406)
Q Consensus 47 ~~~~v~~Itlnrp-~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~ 125 (406)
.+|.-..|.-+++ -..-+++....+.+.++++.+... .+-+|.|...|++ -+.+ + ...+.++. .
T Consensus 117 I~G~~V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dSgGa-----RmqE-------g-~~sL~~~a-k 181 (285)
T TIGR00515 117 LYGMPIVVAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSASGGA-----RMQE-------A-LLSLMQMA-K 181 (285)
T ss_pred ECCEEEEEEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCCc-----cccc-------c-hhHHHhHH-H
Confidence 4454333444443 356789999999999999887644 5778888776544 2211 1 11111211 1
Q ss_pred HHHHHHHhccCCCcEEEEEccccccccch-hhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHHHHHHhhcC
Q 015492 126 LYQFVYLQGTFVKPHVAILDGITMGCGAG-ISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTG 204 (406)
Q Consensus 126 ~~~l~~~i~~~~kPvIAavnG~a~GgG~~-lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~~l~ltG 204 (406)
....+.++.....|.|+++.|+|.||+.. .++.+|++||.+++.+++.... .+...+|.. +.-
T Consensus 182 ~~~~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------Vie~ti~e~-----lpe 245 (285)
T TIGR00515 182 TSAALAKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPR-----------VIEQTVREK-----LPE 245 (285)
T ss_pred HHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHH-----------HHHHHhcCc-----cch
Confidence 22233445567899999999999999644 5679999999999988774221 111111111 111
Q ss_pred CCcCHHHHHHcCccceeccCCChHH
Q 015492 205 EKLNGVEMIACGLATHYTLNGRLPL 229 (406)
Q Consensus 205 ~~i~A~eA~~~GLv~~vv~~~~l~~ 229 (406)
+.-+++-+.+.|+||.|+++.++..
T Consensus 246 ~~q~ae~~~~~G~vD~iv~~~~~r~ 270 (285)
T TIGR00515 246 GFQTSEFLLEHGAIDMIVHRPEMKK 270 (285)
T ss_pred hcCCHHHHHhCCCCcEEECcHHHHH
Confidence 1235666778899999999988754
No 132
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=97.64 E-value=0.0021 Score=62.05 Aligned_cols=150 Identities=11% Similarity=0.068 Sum_probs=90.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHH
Q 015492 51 SRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFV 130 (406)
Q Consensus 51 v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (406)
|+++.++..=..-++....-..+.++++.+.... +-+|+++..|+ +-+.+ + ...+.++.+.. ..+
T Consensus 135 v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~r-lPlV~l~~SGG-----ARmQE-------g-~~sL~qmak~s-aa~ 199 (296)
T CHL00174 135 VALGVMDFQFMGGSMGSVVGEKITRLIEYATNES-LPLIIVCASGG-----ARMQE-------G-SLSLMQMAKIS-SAL 199 (296)
T ss_pred EEEEEECCcccccCcCHHHHHHHHHHHHHHHHcC-CCEEEEECCCC-----ccccc-------c-chhhhhhHHHH-HHH
Confidence 4445555444567899999999999998887654 67888877554 33321 1 11111111111 111
Q ss_pred HH-hccCCCcEEEEEccccccccchh-hccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHHHHHHhhcCCCcC
Q 015492 131 YL-QGTFVKPHVAILDGITMGCGAGI-SLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLN 208 (406)
Q Consensus 131 ~~-i~~~~kPvIAavnG~a~GgG~~l-al~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~~l~ltG~~i~ 208 (406)
.. ...-..|.|+++.|+|.||+... ++.||++|+.+++.+++.-.+ .+...+|.. +.-..=+
T Consensus 200 ~~~~~~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGPr-----------VIe~t~ge~-----lpe~fq~ 263 (296)
T CHL00174 200 YDYQSNKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKR-----------VIEQTLNKT-----VPEGSQA 263 (296)
T ss_pred HHHHHcCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCHH-----------HHHHhcCCc-----CCccccc
Confidence 22 22456999999999999997665 667999999888887764211 111111100 0111124
Q ss_pred HHHHHHcCccceeccCCChHHHH
Q 015492 209 GVEMIACGLATHYTLNGRLPLVE 231 (406)
Q Consensus 209 A~eA~~~GLv~~vv~~~~l~~~~ 231 (406)
|+-.++.|+||.+|+..++....
T Consensus 264 ae~l~~~G~vD~iV~r~~lr~~l 286 (296)
T CHL00174 264 AEYLFDKGLFDLIVPRNLLKGVL 286 (296)
T ss_pred HHHHHhCcCceEEEcHHHHHHHH
Confidence 66678899999999988775433
No 133
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.54 E-value=0.00067 Score=61.72 Aligned_cols=144 Identities=14% Similarity=0.009 Sum_probs=85.9
Q ss_pred EEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHh
Q 015492 54 AILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQ 133 (406)
Q Consensus 54 Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i 133 (406)
|.|..| ++..+...+...+..++..+..+-|.|.=. |.|+|+.. ...++..+
T Consensus 30 I~l~g~-----I~~~~a~~i~aqll~Lea~~~~k~I~lyIN----SpGG~V~a-------------------G~AIydtm 81 (200)
T COG0740 30 IFLGGE-----IEDHMANLIVAQLLFLEAEDPDKDIYLYIN----SPGGSVTA-------------------GLAIYDTM 81 (200)
T ss_pred EEEeee-----echHHHHHHHHHHHHHHhcCCCCCeEEEEe----CCCcccch-------------------hHHHHHHH
Confidence 455544 444455555555555555444444444333 44454432 11245566
Q ss_pred ccCCCcEEEEEccccccccchhhccCCeE--EEeCCeeEecccccccccCCCchHHHHh-----------------hcch
Q 015492 134 GTFVKPHVAILDGITMGCGAGISLQGMYR--VVTDKTVFSNPETQMGFHPDAGASFYLS-----------------HLPG 194 (406)
Q Consensus 134 ~~~~kPvIAavnG~a~GgG~~lal~cD~r--ia~~~a~f~~pe~~~Gl~P~~g~~~~l~-----------------r~~g 194 (406)
...+.||...|-|.|...|.-|++++|.. ++.+++++-+.... |.+-|. ++...- ..-|
T Consensus 82 ~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~G~-a~Di~i~A~ei~~~~~~l~~i~a~~TG 159 (200)
T COG0740 82 QFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQGQ-ASDIEIHAREILKIKERLNRIYAEHTG 159 (200)
T ss_pred HhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCccC-HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 78899999999999999999999999886 88888777765444 222211 111100 0011
Q ss_pred HH---HHHHhhcCCCcCHHHHHHcCccceeccCCCh
Q 015492 195 YL---GEYLALTGEKLNGVEMIACGLATHYTLNGRL 227 (406)
Q Consensus 195 ~~---a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l 227 (406)
.. -....-....++|+||+++||||+|....+.
T Consensus 160 q~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~~ 195 (200)
T COG0740 160 QTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESREA 195 (200)
T ss_pred CCHHHHHHhhcccccCCHHHHHHcCCcceecccccc
Confidence 11 1112223456999999999999999887553
No 134
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=97.43 E-value=0.0012 Score=70.44 Aligned_cols=85 Identities=9% Similarity=-0.112 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEEEEccc
Q 015492 68 SMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGI 147 (406)
Q Consensus 68 ~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~ 147 (406)
..+.++.++++.+..|+.|++|||.-.+ +.|+++..+ +.+++.+..+....|||||..++.
T Consensus 76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~---~~g~~~~~~----------------~ei~~ai~~fk~sgKpVvA~~~~~ 136 (584)
T TIGR00705 76 ISLFDIVNAIRQAADDRRIEGLVFDLSN---FSGWDSPHL----------------VEIGSALSEFKDSGKPVYAYGTNY 136 (584)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEccC---CCCCCHHHH----------------HHHHHHHHHHHhcCCeEEEEEccc
Confidence 4567899999999999999999998763 234444322 123334445556789999988877
Q ss_pred cccccchhhccCCeEEEeCCeeEec
Q 015492 148 TMGCGAGISLQGMYRVVTDKTVFSN 172 (406)
Q Consensus 148 a~GgG~~lal~cD~ria~~~a~f~~ 172 (406)
+ -+|+-|+.+||-+++.+.+.+++
T Consensus 137 ~-s~~YylAs~AD~I~~~p~G~v~~ 160 (584)
T TIGR00705 137 S-QGQYYLASFADEIILNPMGSVDL 160 (584)
T ss_pred c-chhhhhhhhCCEEEECCCceEEe
Confidence 6 57899999999999999877755
No 135
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=97.37 E-value=0.00012 Score=64.48 Aligned_cols=95 Identities=16% Similarity=0.060 Sum_probs=59.3
Q ss_pred ccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEeccccc------------ccc---------cCCCc-----hH-
Q 015492 134 GTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQ------------MGF---------HPDAG-----AS- 186 (406)
Q Consensus 134 ~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~------------~Gl---------~P~~g-----~~- 186 (406)
....|||||.++|.|..+|+-|+.+||-+++.+.+.++...+. +|+ ....+ .+
T Consensus 3 ~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s~ 82 (154)
T PF01343_consen 3 KASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMSE 82 (154)
T ss_dssp HHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--H
T ss_pred cccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCCH
Confidence 4578999999999999999999999999999998877664442 232 11111 11
Q ss_pred ---HHHhhcc---------------h--HHHHHHhhcCCCcCHHHHHHcCccceeccCCChH
Q 015492 187 ---FYLSHLP---------------G--YLGEYLALTGEKLNGVEMIACGLATHYTLNGRLP 228 (406)
Q Consensus 187 ---~~l~r~~---------------g--~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~ 228 (406)
..+.+++ | ....+-+..|..++|++|++.||||++-..+++.
T Consensus 83 ~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~ 144 (154)
T PF01343_consen 83 EERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTFDEAI 144 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCHHHHH
Confidence 1111111 1 1112224688999999999999999997665553
No 136
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=97.29 E-value=0.0045 Score=57.56 Aligned_cols=143 Identities=13% Similarity=0.035 Sum_probs=87.1
Q ss_pred CCHHHHHHHHHHHHHHHcCCCcE--EEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEE
Q 015492 65 LNTSMVGRLKRLYESWEENPDIG--FVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVA 142 (406)
Q Consensus 65 l~~~~~~eL~~~l~~~~~d~~v~--~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIA 142 (406)
.+.++.+.+...|-.++.++..+ -+-|-+.|+...+|-=+... .....++..+...+-+|..
T Consensus 49 ~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v----------------~~glaIyD~m~~ik~~V~T 112 (222)
T PRK12552 49 VGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFE----------------TEAFAICDTMRYIKPPVHT 112 (222)
T ss_pred hhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCcccccccccc----------------ccHHHHHHHHHhcCCCeEE
Confidence 44457888777776665543222 23444555554444111000 0112345556677788999
Q ss_pred EEccccccccchhhccCCe--EEEeCCeeEecccccccccCCCchHHHHh-----------------hcchHH---HHHH
Q 015492 143 ILDGITMGCGAGISLQGMY--RVVTDKTVFSNPETQMGFHPDAGASFYLS-----------------HLPGYL---GEYL 200 (406)
Q Consensus 143 avnG~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~Gl~P~~g~~~~l~-----------------r~~g~~---a~~l 200 (406)
.+-|.|.+.|.-|++++|- |++.++++|.+.....|.. +.++-+.. ..-|.. -.+.
T Consensus 113 v~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~--G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d 190 (222)
T PRK12552 113 ICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR--GQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKD 190 (222)
T ss_pred EEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999995 8999999998877654431 11221111 111111 1222
Q ss_pred hhcCCCcCHHHHHHcCccceeccCC
Q 015492 201 ALTGEKLNGVEMIACGLATHYTLNG 225 (406)
Q Consensus 201 ~ltG~~i~A~eA~~~GLv~~vv~~~ 225 (406)
+-....++|+||+++||||+|+.+.
T Consensus 191 ~~rd~wmsA~EA~eyGliD~Ii~~~ 215 (222)
T PRK12552 191 TDRMFYLTPQEAKEYGLIDRVLESR 215 (222)
T ss_pred hcCCCcCCHHHHHHcCCCcEEeccC
Confidence 2233459999999999999998763
No 137
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=97.15 E-value=0.0098 Score=62.21 Aligned_cols=139 Identities=12% Similarity=0.113 Sum_probs=91.6
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCC--ChHHHHHhhhcCChhhHHHHHHHHHH
Q 015492 51 SRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGG--DVIALYQLLNEGKFEDFKNFFETLYQ 128 (406)
Q Consensus 51 v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~--Dl~~~~~~~~~~~~~~~~~~~~~~~~ 128 (406)
|.++..+.--..-+++......+..+++.+..+. +.+|.|.- |.|. ++.+-.. ....+.. +..
T Consensus 59 v~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~~-~P~v~l~d-----sgGa~~r~~eg~~--------~l~~~g~-i~~ 123 (493)
T PF01039_consen 59 VVVIAQDFTVLGGSVGEVHGEKIARAIELALENG-LPLVYLVD-----SGGAFLRMQEGVE--------SLMGMGR-IFR 123 (493)
T ss_dssp EEEEEEETTSGGGTBSHHHHHHHHHHHHHHHHHT-EEEEEEEE-----ESSBCGGGGGHHH--------HHHHHHH-HHH
T ss_pred EEEEEeccceecCCCCcccceeeehHHHHHHHcC-CCcEEecc-----ccccccccchhhh--------hhhhhHH-HHH
Confidence 3334444444667899999999999998887664 56666655 3444 4433221 1112222 222
Q ss_pred HHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCC-eeEecccccccccCCCchHHHHhhcchHHHHHHhhcCCCc
Q 015492 129 FVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK-TVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKL 207 (406)
Q Consensus 129 l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~~l~ltG~~i 207 (406)
-...+.. ..|+|+++.|+|.|||..++..||++|+.++ +.+++. |+...+ ..+|+.+
T Consensus 124 ~~~~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~--------------------GP~vv~-~~~Ge~~ 181 (493)
T PF01039_consen 124 AIARLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLA--------------------GPRVVE-SATGEEV 181 (493)
T ss_dssp HHHHHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------THHHHH-HHHSSCT
T ss_pred HHHHHhc-CCCeEEEEccccccchhhcccccCccccCccceEEEec--------------------cccccc-cccCccc
Confidence 2333445 8999999999999999999999999999997 777654 112112 2456777
Q ss_pred CHHHH-------HHcCccceeccCCC
Q 015492 208 NGVEM-------IACGLATHYTLNGR 226 (406)
Q Consensus 208 ~A~eA-------~~~GLv~~vv~~~~ 226 (406)
+.++. ...|.+|.++++++
T Consensus 182 ~~~~lgG~~~h~~~sG~~d~v~~de~ 207 (493)
T PF01039_consen 182 DSEELGGADVHAAKSGVVDYVVDDEE 207 (493)
T ss_dssp SHHHHHBHHHHHHTSSSSSEEESSHH
T ss_pred cchhhhhhhhhcccCCCceEEEechH
Confidence 77653 46899999998864
No 138
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.013 Score=59.29 Aligned_cols=148 Identities=16% Similarity=0.138 Sum_probs=104.5
Q ss_pred eCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHH
Q 015492 48 RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLY 127 (406)
Q Consensus 48 ~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~ 127 (406)
++.|.+|.++. .+++.+.+.+.++++.++++.. -+||+.=+ . ++. +.+.+.
T Consensus 25 ~~~v~vi~i~g-----~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ld----T-------------PGG------l~~sm~ 75 (436)
T COG1030 25 EKKVYVIEIDG-----AIDPASADYLQRALQSAEEENA-AAVVLELD----T-------------PGG------LLDSMR 75 (436)
T ss_pred CCeEEEEEecC-----ccCHHHHHHHHHHHHHHHhCCC-cEEEEEec----C-------------CCc------hHHHHH
Confidence 45677788764 5999999999999999987653 34444321 0 111 133456
Q ss_pred HHHHHhccCCCcEEEEEcc---ccccccchhhccCCeEEEeCCeeEecccccccc--cC-CCc-hHHH------Hhhcch
Q 015492 128 QFVYLQGTFVKPHVAILDG---ITMGCGAGISLQGMYRVVTDKTVFSNPETQMGF--HP-DAG-ASFY------LSHLPG 194 (406)
Q Consensus 128 ~l~~~i~~~~kPvIAavnG---~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl--~P-~~g-~~~~------l~r~~g 194 (406)
++++.+.+.+.||+..|.= +|..+|.-++++||+..+.+.+.+|--..-.+- .+ ... .... +.+.-|
T Consensus 76 ~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~g 155 (436)
T COG1030 76 QIVRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERG 155 (436)
T ss_pred HHHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcC
Confidence 6888899999998888754 499999999999999999999988775443222 11 111 1111 222334
Q ss_pred H--H-HHHHhhcCCCcCHHHHHHcCccceeccC
Q 015492 195 Y--L-GEYLALTGEKLNGVEMIACGLATHYTLN 224 (406)
Q Consensus 195 ~--~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~ 224 (406)
+ . |.+++.....++++||.+.|++|-+..+
T Consensus 156 RN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~ 188 (436)
T COG1030 156 RNPTWAERFVTENLSLTAEEALRQGVIDLIARD 188 (436)
T ss_pred CChHHHHHHhhhccCCChhHHHhcCccccccCC
Confidence 3 3 6888889999999999999999988765
No 139
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=96.88 E-value=0.034 Score=58.33 Aligned_cols=154 Identities=14% Similarity=0.067 Sum_probs=97.2
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHH
Q 015492 54 AILNRPS-NLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYL 132 (406)
Q Consensus 54 Itlnrp~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 132 (406)
|.-|+|. ..-+++..-.....+.++.+.. ..+-+|.|.-.++ |..|.+- +....++...+++.+
T Consensus 319 vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~-~~lPlV~lvDs~G-~~~g~~~-------------E~~g~~~~~a~~~~a 383 (512)
T TIGR01117 319 IIANQPKVMAGCLDIDSSDKIARFIRFCDA-FNIPIVTFVDVPG-FLPGVNQ-------------EYGGIIRHGAKVLYA 383 (512)
T ss_pred EEEeccccccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEEeCcC-ccccHHH-------------HHHHHHHHHHHHHHH
Confidence 4445553 3356999999999999987764 4577777766544 4444332 122234455567788
Q ss_pred hccCCCcEEEEEccccccccchhhc----cCCeEEEeCCeeEecccccccccCCCchHHHHhhc-ch----HH-HHHHh-
Q 015492 133 QGTFVKPHVAILDGITMGCGAGISL----QGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHL-PG----YL-GEYLA- 201 (406)
Q Consensus 133 i~~~~kPvIAavnG~a~GgG~~lal----~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~-~g----~~-a~~l~- 201 (406)
+.....|.|+.|-|.+.|||+.-+. .+|+++|.+++.++. .++-++...+-+. +. .. +..-.
T Consensus 384 ~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~v-------~~pe~a~~i~~~~~l~~~~~~~~~~~~~~ 456 (512)
T TIGR01117 384 YSEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIAV-------MGPAGAANIIFRKDIKEAKDPAATRKQKI 456 (512)
T ss_pred HHhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEee-------cCHHHHHHHHhhhhcccccCHHHHHHHHH
Confidence 8889999999999999887544332 289988888776654 3333333333221 10 01 11111
Q ss_pred --hcCCCcCHHHHHHcCccceeccCCChHH
Q 015492 202 --LTGEKLNGVEMIACGLATHYTLNGRLPL 229 (406)
Q Consensus 202 --ltG~~i~A~eA~~~GLv~~vv~~~~l~~ 229 (406)
..-+..++..+.+.|+||.|+++.+.-.
T Consensus 457 ~~~~~~~~~~~~~a~~g~vD~VI~P~~tR~ 486 (512)
T TIGR01117 457 AEYREEFANPYKAAARGYVDDVIEPKQTRP 486 (512)
T ss_pred HHHHHhhcCHHHHHhcCCCCeeEChHHHHH
Confidence 1223457889999999999999987643
No 140
>PRK10949 protease 4; Provisional
Probab=96.74 E-value=0.012 Score=62.90 Aligned_cols=86 Identities=9% Similarity=-0.032 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEEEEccc
Q 015492 68 SMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGI 147 (406)
Q Consensus 68 ~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~ 147 (406)
-.+.++.++++.+..|+.|++|||.-.+. .|..+..+ +.+.+.+..+....|||||.-+.
T Consensus 95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~---gG~~~a~~----------------~eI~~ai~~fk~sGKpVvA~~~~- 154 (618)
T PRK10949 95 NSLFDIVNTIRQAKDDRNITGIVLDLKNF---AGADQPSM----------------QYIGKALREFRDSGKPVYAVGDS- 154 (618)
T ss_pred ccHHHHHHHHHHHhcCCCceEEEEEeCCC---CCccHHHH----------------HHHHHHHHHHHHhCCeEEEEecC-
Confidence 44568899999999999999999998631 12222211 12233444555678999986444
Q ss_pred cccccchhhccCCeEEEeCCeeEecc
Q 015492 148 TMGCGAGISLQGMYRVVTDKTVFSNP 173 (406)
Q Consensus 148 a~GgG~~lal~cD~ria~~~a~f~~p 173 (406)
+--+|.-||.+||-+++.+.+.+++.
T Consensus 155 ~~s~~YyLASaAD~I~l~P~G~v~~~ 180 (618)
T PRK10949 155 YSQGQYYLASFANKIYLSPQGVVDLH 180 (618)
T ss_pred ccchhhhhhhhCCEEEECCCceEEEe
Confidence 44579999999999999998766543
No 141
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=96.61 E-value=0.029 Score=58.83 Aligned_cols=139 Identities=12% Similarity=0.138 Sum_probs=83.5
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHH
Q 015492 51 SRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFV 130 (406)
Q Consensus 51 v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (406)
|.++..+..=..-+++......+.++++.+.++. +-+|.|.-.|+.+ +.+- ......+.+.+...
T Consensus 84 v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSgGar-----m~eg--------~~~l~~~~~~~~~~- 148 (512)
T TIGR01117 84 VYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSGGAR-----IQEA--------VDALKGYGDIFYRN- 148 (512)
T ss_pred EEEEEECCcccccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCCCCC-----cccc--------chhhhhHHHHHHHH-
Confidence 3434333333567889999999999998887665 5677776654433 2110 00011111111111
Q ss_pred HHhccCCCcEEEEEccccccccchhhccCCeEEEeCC-eeEecccccccccCCCchHHHHhhcchHHHHHHhhcCCCcCH
Q 015492 131 YLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK-TVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNG 209 (406)
Q Consensus 131 ~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~~l~ltG~~i~A 209 (406)
.. ..-..|+|++|.|+|.||+.....+||++|++++ +.+++. +...+.. .+|+.+++
T Consensus 149 ~~-~s~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~a-----------GP~vv~~----------~~Ge~v~~ 206 (512)
T TIGR01117 149 TI-ASGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFIT-----------GPQVIKT----------VTGEEVTA 206 (512)
T ss_pred HH-HcCCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEec-----------ChHHHHh----------hcCcccch
Confidence 11 2335899999999999999888889999999996 445442 1111111 34555555
Q ss_pred HHH-----H--HcCccceeccCCC
Q 015492 210 VEM-----I--ACGLATHYTLNGR 226 (406)
Q Consensus 210 ~eA-----~--~~GLv~~vv~~~~ 226 (406)
++. + .-|++|.+++++.
T Consensus 207 e~lGGa~~h~~~sGv~d~~~~de~ 230 (512)
T TIGR01117 207 EQLGGAMAHNSVSGVAHFIAEDDD 230 (512)
T ss_pred hhcchHHHhccccceeEEecCChH
Confidence 444 3 5799999988754
No 142
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=96.44 E-value=0.053 Score=51.39 Aligned_cols=142 Identities=12% Similarity=0.119 Sum_probs=96.0
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHH
Q 015492 51 SRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFV 130 (406)
Q Consensus 51 v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (406)
++...++-.=-.-++..-.=..+..+++.+-.+. +.+|+++.+| |+-+.+-. -.+.++. .....+
T Consensus 124 vv~av~df~FmgGSmGsVvGeki~ra~E~A~e~k-~P~v~f~aSG-----GARMQEg~--------lSLMQMa-ktsaAl 188 (294)
T COG0777 124 VVLAVMDFAFMGGSMGSVVGEKITRAIERAIEDK-LPLVLFSASG-----GARMQEGI--------LSLMQMA-KTSAAL 188 (294)
T ss_pred EEEEEEeccccccchhHHHHHHHHHHHHHHHHhC-CCEEEEecCc-----chhHhHHH--------HHHHHHH-HHHHHH
Confidence 4445555444456788888888999998877654 7899998865 33332210 0111111 223345
Q ss_pred HHhccCCCcEEEEEccccccc-cchhhccCCeEEEeCCeeEeccccc-----ccc-cCCCchHHHHhhcchHHHHHHhhc
Q 015492 131 YLQGTFVKPHVAILDGITMGC-GAGISLQGMYRVVTDKTVFSNPETQ-----MGF-HPDAGASFYLSHLPGYLGEYLALT 203 (406)
Q Consensus 131 ~~i~~~~kPvIAavnG~a~Gg-G~~lal~cD~ria~~~a~f~~pe~~-----~Gl-~P~~g~~~~l~r~~g~~a~~l~lt 203 (406)
..+..-..|.|+.+.++..|| -+.+++..|+.||.++|.+||..-+ +|- .|++
T Consensus 189 ~~l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRVIEQTire~LPeg-------------------- 248 (294)
T COG0777 189 KRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRVIEQTIREKLPEG-------------------- 248 (294)
T ss_pred HHHHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcchhhhhhhcccCCcc--------------------
Confidence 566778899999999999988 6899999999999999988875332 222 1111
Q ss_pred CCCcCHHHHHHcCccceeccCCChHH
Q 015492 204 GEKLNGVEMIACGLATHYTLNGRLPL 229 (406)
Q Consensus 204 G~~i~A~eA~~~GLv~~vv~~~~l~~ 229 (406)
.=+++-.++.|+||.||+..++..
T Consensus 249 --fQ~aEfLlehG~iD~iv~R~elr~ 272 (294)
T COG0777 249 --FQTAEFLLEHGMIDMIVHRDELRT 272 (294)
T ss_pred --hhhHHHHHHcCCceeeecHHHHHH
Confidence 124566789999999999977654
No 143
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=96.39 E-value=0.0037 Score=59.47 Aligned_cols=90 Identities=13% Similarity=0.108 Sum_probs=63.9
Q ss_pred HHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHHHHHHhhcCC
Q 015492 126 LYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGE 205 (406)
Q Consensus 126 ~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~~l~ltG~ 205 (406)
+.+-+..+.++++|+||.|=|---+||+--...+|.+++-++++++. +.|.+.++.++..--- +.+ +-...
T Consensus 177 IA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~AsILWkD~~k--a~e-AAe~m 247 (317)
T COG0825 177 IARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCASILWKDASK--AKE-AAEAM 247 (317)
T ss_pred HHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhhhhhcChhh--hHH-HHHHc
Confidence 33345567799999999999997777766666789999999998875 3344444433322211 222 23345
Q ss_pred CcCHHHHHHcCccceeccC
Q 015492 206 KLNGVEMIACGLATHYTLN 224 (406)
Q Consensus 206 ~i~A~eA~~~GLv~~vv~~ 224 (406)
.++|++++++|+||.|+|.
T Consensus 248 kita~dLk~lgiID~II~E 266 (317)
T COG0825 248 KITAHDLKELGIIDGIIPE 266 (317)
T ss_pred CCCHHHHHhCCCcceeccC
Confidence 7999999999999999986
No 144
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=96.37 E-value=0.072 Score=56.47 Aligned_cols=147 Identities=14% Similarity=0.131 Sum_probs=88.8
Q ss_pred EeCcEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHH
Q 015492 47 GRAKSRAAILNRPS-NLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFET 125 (406)
Q Consensus 47 ~~~~v~~Itlnrp~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~ 125 (406)
.+|.-..+.-|.+. +.-+++......+.++++.+.+.. +-+|.|.-.|+.+-.+ ....+. ....+.+
T Consensus 126 V~Gr~V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~~-lPlV~l~DSgGarl~~-q~e~~~---------~~~~~g~- 193 (569)
T PLN02820 126 VHGRLCMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCR-LPCIYLVDSGGANLPR-QAEVFP---------DRDHFGR- 193 (569)
T ss_pred ECCEEEEEEEECCCccCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCcCCcc-cccccc---------hHhHHHH-
Confidence 34433333334443 567899999999999998876554 6777777655444221 111010 0011111
Q ss_pred HHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCC-eeEecccccccccCCCchHHHHhhcchHHHHHHhhcC
Q 015492 126 LYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK-TVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTG 204 (406)
Q Consensus 126 ~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~~l~ltG 204 (406)
+..-...+.....|.|++|.|+|.|||+....+||++|++++ +.+++. +...+ + ..+|
T Consensus 194 if~~~~~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~a-----------GP~vV---------~-~~~G 252 (569)
T PLN02820 194 IFYNQARMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFLA-----------GPPLV---------K-AATG 252 (569)
T ss_pred HHHHHHHHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEec-----------CHHHH---------H-hhcC
Confidence 111122345567999999999999999999999999999874 555441 11111 1 1355
Q ss_pred CCcCHHHH-----H--HcCccceeccCCC
Q 015492 205 EKLNGVEM-----I--ACGLATHYTLNGR 226 (406)
Q Consensus 205 ~~i~A~eA-----~--~~GLv~~vv~~~~ 226 (406)
+.+++++. + .-|.+|.+++++.
T Consensus 253 e~v~~eeLGGa~~h~~~sGv~d~~~~de~ 281 (569)
T PLN02820 253 EEVSAEDLGGADVHCKVSGVSDHFAQDEL 281 (569)
T ss_pred cccCHHHhCCHHHhcccccccccccCchH
Confidence 56666554 3 3788988888754
No 145
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.051 Score=50.98 Aligned_cols=132 Identities=12% Similarity=0.047 Sum_probs=78.4
Q ss_pred CCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEEEE
Q 015492 65 LNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAIL 144 (406)
Q Consensus 65 l~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav 144 (406)
++.++-+.+...|-.++.+++-|=|.+.=. |.|+++.. ...++..+..+.-||-..+
T Consensus 101 Idd~va~~viaqlL~Ld~ed~~K~I~lyIN----SPGG~vta-------------------glAIYDtMq~ik~~V~Tic 157 (275)
T KOG0840|consen 101 IDDDVANLVIAQLLYLDSEDPKKPIYLYIN----SPGGSVTA-------------------GLAIYDTMQYIKPDVSTIC 157 (275)
T ss_pred CcHHHHHHHHHHHHHhhccCCCCCeEEEEe----CCCCccch-------------------hhhHHHHHHhhCCCceeee
Confidence 788888888887777777666666666544 55555421 1124445556666666666
Q ss_pred ccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHHHHHH------------hhcC--------
Q 015492 145 DGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYL------------ALTG-------- 204 (406)
Q Consensus 145 nG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~~l------------~ltG-------- 204 (406)
=|.|.+-|.-|..+ ++.+-++.+|..++=+.-+.|++.--..=+-..|+|+ --||
T Consensus 158 ~G~Aas~aalLLaa-----G~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~~ 232 (275)
T KOG0840|consen 158 VGLAASMAALLLAA-----GAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIEK 232 (275)
T ss_pred hhhHHhHHHHHHhc-----CCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHh
Confidence 77777666555443 3556777777777666433333210000000012222 2244
Q ss_pred -----CCcCHHHHHHcCccceeccC
Q 015492 205 -----EKLNGVEMIACGLATHYTLN 224 (406)
Q Consensus 205 -----~~i~A~eA~~~GLv~~vv~~ 224 (406)
+.++|+||++.||||.|++.
T Consensus 233 d~dRd~fmsa~EA~eyGliD~v~~~ 257 (275)
T KOG0840|consen 233 DMDRDRFMSAEEAKEYGLIDKVIDH 257 (275)
T ss_pred hhcccccCCHHHHHHhcchhhhhcC
Confidence 44899999999999999874
No 146
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=94.37 E-value=0.27 Score=51.47 Aligned_cols=160 Identities=13% Similarity=0.076 Sum_probs=94.1
Q ss_pred eCcEEEEEEcCCCCCC-CCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHH
Q 015492 48 RAKSRAAILNRPSNLN-ALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETL 126 (406)
Q Consensus 48 ~~~v~~Itlnrp~~~N-al~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 126 (406)
+|.-.-|.-|+|.... +++.+-.....+.++..+. -++-+|.|.-. ..|..|-. .+.....+..
T Consensus 292 ~G~pVGiian~~~~~~G~~~~~~a~K~arfi~lcd~-~~iPlv~l~dt-pGf~~g~~-------------~E~~g~~~~g 356 (493)
T PF01039_consen 292 GGRPVGIIANNPRQRAGALDPDGARKAARFIRLCDA-FNIPLVTLVDT-PGFMPGPE-------------AERAGIIRAG 356 (493)
T ss_dssp TTEEEEEEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-TT--EEEEEEE-CEB--SHH-------------HHHTTHHHHH
T ss_pred CCcceEEEEeccccccccCChHHHHHHHHHHHHHHh-hCCceEEEeec-ccccccch-------------hhhcchHHHH
Confidence 3443345556765322 6999999999998887765 56778877654 23333322 2223445667
Q ss_pred HHHHHHhccCCCcEEEEEccccccccchhhccC----CeEEEeCCeeEecccccccccCCCchHHHHhhcchH-------
Q 015492 127 YQFVYLQGTFVKPHVAILDGITMGCGAGISLQG----MYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY------- 195 (406)
Q Consensus 127 ~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~c----D~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~------- 195 (406)
.+++.++..+..|+|..|-|.+.|||....... |+++|.+++.+ |+.++-|+...+.+.--.
T Consensus 357 a~~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~-------~vm~~e~a~~i~~~~~~~~~~~~~~ 429 (493)
T PF01039_consen 357 ARLLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEI-------GVMGPEGAASILYRDELEAAEAEGA 429 (493)
T ss_dssp HHHHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EE-------ESS-HHHHHHHHTHHHHHHSCHCCH
T ss_pred HHHHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhccee-------eecChhhhheeeehhhhhhhhcccc
Confidence 778889999999999999999999876444444 67766666555 454544444433322100
Q ss_pred --HH--HHH-hh-cCCCcCHHHHHHcCccceeccCCChHH
Q 015492 196 --LG--EYL-AL-TGEKLNGVEMIACGLATHYTLNGRLPL 229 (406)
Q Consensus 196 --~a--~~l-~l-tG~~i~A~eA~~~GLv~~vv~~~~l~~ 229 (406)
.+ .+. -- .-...++..+...|++|.|+++.+...
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~D~ii~p~~tR~ 469 (493)
T PF01039_consen 430 DPEAQRAEKIAEYEDELSSPYRAASRGYVDDIIDPAETRK 469 (493)
T ss_dssp SHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEESSGGGHHH
T ss_pred hhHHHHHHHHHHHHHhcCCHHHHHhcCCCCCccCHHHHHH
Confidence 01 011 11 112257888999999999999988654
No 147
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=92.85 E-value=2.8 Score=44.67 Aligned_cols=142 Identities=15% Similarity=0.080 Sum_probs=91.5
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEEE
Q 015492 64 ALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAI 143 (406)
Q Consensus 64 al~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAa 143 (406)
+++.+-.....+.++..+. -++-+|.|.-..+ |..|.+-.. ....+...+++.++....+|.|++
T Consensus 381 ~l~~~~a~Kaarfi~lc~~-~~iPlv~l~D~pG-f~~G~~~E~-------------~G~~~~~a~l~~A~a~~~VP~isv 445 (569)
T PLN02820 381 ILFTESALKGAHFIELCAQ-RGIPLLFLQNITG-FMVGSRSEA-------------SGIAKAGAKMVMAVACAKVPKITI 445 (569)
T ss_pred ccCHHHHHHHHHHHHHHHh-cCCCEEEEEECCC-CCCCHHHHH-------------hhHHHHHHHHHHHHHhCCCCEEEE
Confidence 5788888888888776654 5577776665432 555544322 234666778888899999999999
Q ss_pred Eccccccccchhhc----cCCeEEEeCCeeEecccccccccCCCchHHHHhhc-c------h------HH-H-HH-H-hh
Q 015492 144 LDGITMGCGAGISL----QGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHL-P------G------YL-G-EY-L-AL 202 (406)
Q Consensus 144 vnG~a~GgG~~lal----~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~-~------g------~~-a-~~-l-~l 202 (406)
|-|.|+|+|..-.. ..|++++. |...+|+.++-|+...+.+. + | .. + ++ + -.
T Consensus 446 i~g~a~G~g~~aM~g~~~~~d~~~aw-------p~A~i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (569)
T PLN02820 446 IVGGSFGAGNYGMCGRAYSPNFLFMW-------PNARIGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVEA 518 (569)
T ss_pred EECCcchHHHHHhcCcCCCCCEEEEC-------CCCeEEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHHH
Confidence 99999998654443 45666555 55556666666666555431 1 0 00 0 01 0 11
Q ss_pred cCCCcCHHHHHHcCccceeccCCCh
Q 015492 203 TGEKLNGVEMIACGLATHYTLNGRL 227 (406)
Q Consensus 203 tG~~i~A~eA~~~GLv~~vv~~~~l 227 (406)
.-+..++..|-+.|+||.|+++.+.
T Consensus 519 ~~~~~~p~~aa~~~~vD~VIdP~dT 543 (569)
T PLN02820 519 YEREANPYYSTARLWDDGVIDPADT 543 (569)
T ss_pred HHHhCCHHHHHHcCCcCcccCHHHH
Confidence 1234577778899999999998664
No 148
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=92.69 E-value=0.15 Score=51.84 Aligned_cols=64 Identities=16% Similarity=0.185 Sum_probs=51.5
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCCCCcHHhhhhhe---eeCCCCCCCCC
Q 015492 300 KAVEKLKEASPLSLKVTLQSIREGRFQSLDQCLVREYRITLNGISKKVSNDFCEGIRAR---LVDKDFAPKWD 369 (406)
Q Consensus 300 ~~a~~l~~~~p~al~~tk~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egi~af---l~ek~r~P~w~ 369 (406)
+++++++..+|.++..+|+.++... ......+..+...+..++. ++|+.|++.+| + +| |.|.|-
T Consensus 228 ~~~~~i~~~~p~av~~~k~~~~~~~-~~~~~~l~~~~~~i~~~f~---~~d~~ei~~al~~~~-~k-r~~~wa 294 (401)
T PLN02157 228 EQLKKLLTDDPSVVESCLEKCAEVA-HPEKTGVIRRIDLLEKCFS---HDTVEEIIDSLEIEA-GR-RKDTWC 294 (401)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhccc-CCcchhHHHHHHHHHHHhc---CCCHHHHHHHHHhhh-cc-cchHHH
Confidence 4577888899999999999998652 3456677777777777774 89999999999 6 77 788885
No 149
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=92.64 E-value=0.56 Score=48.93 Aligned_cols=96 Identities=11% Similarity=0.094 Sum_probs=60.8
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccC
Q 015492 57 NRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTF 136 (406)
Q Consensus 57 nrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 136 (406)
+.+.+.-++..-....+..+.+.+..+.. -+|.|.- |.|+.+.+= ...+..+. .+..-...+...
T Consensus 99 D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~-P~i~l~d-----sgGari~~~--------v~~l~g~g-~iF~~~a~~Sg~ 163 (526)
T COG4799 99 DFTVKGGTLGEMTAKKILRAQELAIENGL-PVIGLND-----SGGARIQEG--------VPSLAGYG-RIFYRNARASGV 163 (526)
T ss_pred cCceecccccccccchHHHHHHHHHHcCC-CEEEEEc-----ccccccccC--------ccccccch-HHHHHHHHhccC
Confidence 34446677887778888888877776553 3444433 233333221 01111111 111122334445
Q ss_pred CCcEEEEEccccccccchhhccCCeEEEeCCe
Q 015492 137 VKPHVAILDGITMGCGAGISLQGMYRVVTDKT 168 (406)
Q Consensus 137 ~kPvIAavnG~a~GgG~~lal~cD~ria~~~a 168 (406)
.|.|++|-|.|.|||+-+...||++|+.++.
T Consensus 164 -IPqIsvv~G~c~gGgaY~pal~D~~imv~~~ 194 (526)
T COG4799 164 -IPQISVVMGPCAGGGAYSPALTDFVIMVRDQ 194 (526)
T ss_pred -CCEEEEEEecCcccccccccccceEEEEcCC
Confidence 9999999999999999999999999999974
No 150
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=86.41 E-value=15 Score=37.54 Aligned_cols=148 Identities=14% Similarity=0.067 Sum_probs=96.0
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHH
Q 015492 54 AILNRPS-NLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYL 132 (406)
Q Consensus 54 Itlnrp~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 132 (406)
|.-|+|+ ..-.|..+.-....+.++- .....+..|.|...++ |-.|.+...- ...+...+++.+
T Consensus 353 Ivgnn~kf~~G~L~s~sa~KgarfIe~-c~q~~IPLi~l~ni~G-fm~g~~~e~~-------------gIaK~gAklv~a 417 (536)
T KOG0540|consen 353 IVGNNPKFAGGVLFSESAVKGARFIEL-CDQRNIPLIFLQNITG-FMVGRAAEAG-------------GIAKHGAKLVYA 417 (536)
T ss_pred EeccCchhcccccchhhhhhhHHHHHH-HHhcCCcEEEEEccCC-ccccchhhhh-------------chhhhhhhhhhh
Confidence 4556765 3346666666666555544 4456788888887766 8888886532 234445567888
Q ss_pred hccCCCcEEEEEccccccccc---hhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhc-----chH--HHHHHhh
Q 015492 133 QGTFVKPHVAILDGITMGCGA---GISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHL-----PGY--LGEYLAL 202 (406)
Q Consensus 133 i~~~~kPvIAavnG~a~GgG~---~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~-----~g~--~a~~l~l 202 (406)
+..-.+|-|..+.|.+.||-. .-.++-|+.++.+.|++++-.. -++.-.+.+. ... ...+..
T Consensus 418 ~a~akvpkITiit~~syGG~y~m~sr~~~gd~~yawP~A~IavmG~-------~~a~~Vi~q~~~e~a~~~~~~~~E~f- 489 (536)
T KOG0540|consen 418 VACAKVPKITIITGGSYGGNYAMCSRGYSGDINYAWPNARIAVMGG-------KQAANVIFQITLEKAVALKAPYIEKF- 489 (536)
T ss_pred hhhccCceEEEEecCccCCcccccccccCCceeEEcccceeeeccc-------cchhhhhhhhhhhhhhhhcchHHHHh-
Confidence 888899999999999999754 4567778888888877665322 1222223322 111 122322
Q ss_pred cCCCcCHHHHHHcCccceeccCCChH
Q 015492 203 TGEKLNGVEMIACGLATHYTLNGRLP 228 (406)
Q Consensus 203 tG~~i~A~eA~~~GLv~~vv~~~~l~ 228 (406)
|.++. |...|++|.|+++.+..
T Consensus 490 -~npy~---a~~Rg~~D~II~p~~tR 511 (536)
T KOG0540|consen 490 -GNPYY---AAARGWDDGIIDPSDTR 511 (536)
T ss_pred -cCccH---HHHhhccccccChhHhh
Confidence 66655 56789999999997654
No 151
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=74.87 E-value=27 Score=36.73 Aligned_cols=119 Identities=14% Similarity=0.176 Sum_probs=80.0
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHH
Q 015492 54 AILNRPS-NLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYL 132 (406)
Q Consensus 54 Itlnrp~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 132 (406)
|.=|.|. ..-+|+.+-...-.+.+ ++.+-.++-.|.|.-. ..|..|-|-.. ....+...+++.+
T Consensus 328 iIANqp~~~~G~l~~~sa~KaArFI-~~cd~~~iPlv~L~d~-pGFm~G~~~E~-------------~giik~Gakl~~A 392 (526)
T COG4799 328 IIANQPRHLGGVLDIDSADKAARFI-RLCDAFNIPLVFLVDT-PGFMPGTDQEY-------------GGIIKHGAKLLYA 392 (526)
T ss_pred EEecCccccccccchHHHHHHHHHH-HhhhccCCCeEEEeCC-CCCCCChhHHh-------------ChHHHhhhHHHhh
Confidence 4446665 44578888888888888 4555566777777543 56777776432 3346667789999
Q ss_pred hccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccccccccCCCchHHHHh
Q 015492 133 QGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLS 190 (406)
Q Consensus 133 i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~ 190 (406)
+....+|.|..|-|.++|||...+..-.+- .+-.|..|..++|+.-+-|+...+.
T Consensus 393 ~aeatVPkitvI~rkayGga~~~M~~~~~~---~~~~~AwP~a~iaVMG~egAv~i~~ 447 (526)
T COG4799 393 VAEATVPKITVITRKAYGGAYYVMGGKALG---PDFNYAWPTAEIAVMGPEGAVSILY 447 (526)
T ss_pred HhhccCCeEEEEecccccceeeeecCccCC---CceeEecCcceeeecCHHHHHHHHH
Confidence 999999999999999999986544332221 4455566666667655555554444
No 152
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=63.88 E-value=55 Score=30.80 Aligned_cols=142 Identities=11% Similarity=-0.021 Sum_probs=76.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCcEEEEE--EcCCCCcccCCChHHHHHhhhcCChhhH---HHHHHHHHHHHHHhccC
Q 015492 62 LNALNTSMVGRLKRLYESWEENPDIGFVLM--KGAGRAFCSGGDVIALYQLLNEGKFEDF---KNFFETLYQFVYLQGTF 136 (406)
Q Consensus 62 ~Nal~~~~~~eL~~~l~~~~~d~~v~~VVl--tg~G~~F~~G~Dl~~~~~~~~~~~~~~~---~~~~~~~~~l~~~i~~~ 136 (406)
...+..+.--.|..++.+.-.+..-+.||+ -..|..++ ..+++ ..++....+.+...+.-
T Consensus 40 ~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~sQa~g---------------rreEllGi~~alAhla~a~a~AR~~ 104 (234)
T PF06833_consen 40 HGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVPSQAYG---------------RREELLGINQALAHLAKAYALARLA 104 (234)
T ss_pred CCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCccccc---------------hHHHHhhHHHHHHHHHHHHHHHHHc
Confidence 467887777777766654443333333332 22222221 11222 33444455556666778
Q ss_pred CCcEEEEEccccccccc-hhhccCCeEEEeCCeeEecccccccccCCCchHHHHhhcchHHHHHHhhcCC--CcCHHHHH
Q 015492 137 VKPHVAILDGITMGCGA-GISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGE--KLNGVEMI 213 (406)
Q Consensus 137 ~kPvIAavnG~a~GgG~-~lal~cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~~l~ltG~--~i~A~eA~ 213 (406)
.-|||+.|-|.+++||| ...+.+|-.||-+++ .+-..+-. +..++.++.=-.-.++.-+-- ..+.+--.
T Consensus 105 GHpvI~Lv~G~A~SGaFLA~GlqA~rl~AL~ga-------~i~vM~~~-s~ARVTk~~ve~Le~la~s~PvfA~gi~ny~ 176 (234)
T PF06833_consen 105 GHPVIGLVYGKAMSGAFLAHGLQANRLIALPGA-------MIHVMGKP-SAARVTKRPVEELEELAKSVPVFAPGIENYA 176 (234)
T ss_pred CCCeEEEEecccccHHHHHHHHHhcchhcCCCC-------eeecCChH-HhHHHhhcCHHHHHHHhhcCCCcCCCHHHHH
Confidence 99999999999998885 566778888776633 33222222 122222221100122222221 24556667
Q ss_pred HcCccceeccCCC
Q 015492 214 ACGLATHYTLNGR 226 (406)
Q Consensus 214 ~~GLv~~vv~~~~ 226 (406)
++|.++++.+.+.
T Consensus 177 ~lG~l~~l~~~~~ 189 (234)
T PF06833_consen 177 KLGALDELWDGDL 189 (234)
T ss_pred HhccHHHHhcccc
Confidence 8899999888544
No 153
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=60.31 E-value=21 Score=34.43 Aligned_cols=75 Identities=24% Similarity=0.339 Sum_probs=48.7
Q ss_pred EEeCcEEEEEEcCCCCCCCCCHHHHHHHH-----------------------HHHHHHHcCCCcEEEEEEcCCCCcccCC
Q 015492 46 EGRAKSRAAILNRPSNLNALNTSMVGRLK-----------------------RLYESWEENPDIGFVLMKGAGRAFCSGG 102 (406)
Q Consensus 46 ~~~~~v~~Itlnrp~~~Nal~~~~~~eL~-----------------------~~l~~~~~d~~v~~VVltg~G~~F~~G~ 102 (406)
.+.++|++|. |. -.|+.++..+|. ++|+.+++|++.++||+-|. -|+
T Consensus 143 ~~~G~IGiVS--rS---GTLTyE~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmiGE-----iGG 212 (293)
T COG0074 143 YKPGNIGIVS--RS---GTLTYEAVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMIGE-----IGG 212 (293)
T ss_pred ccCCceEEEe--cC---cchHHHHHHHHHhcCCceEEEEEeCCCCcCCccHHHHHHHHhcCccccEEEEEec-----CCC
Confidence 3467777664 33 457777777776 67788888999999998887 122
Q ss_pred ChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEEEEccccc
Q 015492 103 DVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITM 149 (406)
Q Consensus 103 Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~ 149 (406)
+- ++...+|.. . ....|||||.+-|.+.
T Consensus 213 ~a-----------Ee~AA~~i~-------~-~~~~KPVVa~iaG~ta 240 (293)
T COG0074 213 PA-----------EEEAAEYIK-------A-NATRKPVVAYIAGRTA 240 (293)
T ss_pred cH-----------HHHHHHHHH-------H-hccCCCEEEEEeccCC
Confidence 21 222233322 2 2344999999999876
No 154
>smart00250 PLEC Plectin repeat.
Probab=56.03 E-value=9.1 Score=24.99 Aligned_cols=18 Identities=39% Similarity=0.470 Sum_probs=16.9
Q ss_pred cCCCcCHHHHHHcCccce
Q 015492 203 TGEKLNGVEMIACGLATH 220 (406)
Q Consensus 203 tG~~i~A~eA~~~GLv~~ 220 (406)
||+++|-.||.+.||+|.
T Consensus 18 t~~~lsv~eA~~~glid~ 35 (38)
T smart00250 18 TGQKLSVEEALRRGLIDP 35 (38)
T ss_pred CCCCcCHHHHHHcCCCCc
Confidence 899999999999999985
No 155
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=51.10 E-value=52 Score=26.04 Aligned_cols=50 Identities=10% Similarity=-0.007 Sum_probs=36.7
Q ss_pred CcEEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCC
Q 015492 41 DQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG 95 (406)
Q Consensus 41 ~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G 95 (406)
-.+.++..+++.+|++..+ ++......+.+.+..+..++..+.|++--.+
T Consensus 3 ~~i~~~~~~~~~vi~~~G~-----l~~~~~~~~~~~l~~~~~~~~~~~vvidls~ 52 (108)
T TIGR00377 3 LNIETEVQEGVVIVRLSGE-----LDAHTAPLLREKVTPAAERTGPRPIVLDLED 52 (108)
T ss_pred eEEEEEEECCEEEEEEecc-----cccccHHHHHHHHHHHHHhcCCCeEEEECCC
Confidence 3577888999999998854 6666677777777666554567788887766
No 156
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=48.72 E-value=28 Score=35.91 Aligned_cols=80 Identities=13% Similarity=0.096 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEEEEc
Q 015492 66 NTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILD 145 (406)
Q Consensus 66 ~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavn 145 (406)
......++..+++.+...+++-+|||.=.| +-+.++.. | +-..+.++++.++.|||++|
T Consensus 168 G~~a~~~i~~al~~~~~~~~~dviii~RGG------Gs~eDL~~------------F--n~e~~~rai~~~~~Pvis~i- 226 (432)
T TIGR00237 168 GEGAVQSIVESIELANTKNECDVLIVGRGG------GSLEDLWS------------F--NDEKVARAIFLSKIPIISAV- 226 (432)
T ss_pred CccHHHHHHHHHHHhhcCCCCCEEEEecCC------CCHHHhhh------------c--CcHHHHHHHHcCCCCEEEec-
Confidence 445567777888777765555555554322 22222221 1 12357788999999999987
Q ss_pred cccccccchhhccCCeEEEeCC
Q 015492 146 GITMGCGAGISLQGMYRVVTDK 167 (406)
Q Consensus 146 G~a~GgG~~lal~cD~ria~~~ 167 (406)
||-.-- .-.=+.+|.|..|++
T Consensus 227 GHe~D~-ti~D~vAd~ra~TPt 247 (432)
T TIGR00237 227 GHETDF-TISDFVADLRAPTPS 247 (432)
T ss_pred CcCCCc-cHHHHhhhccCCCcH
Confidence 343211 112345666666653
No 157
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=48.17 E-value=45 Score=32.94 Aligned_cols=15 Identities=40% Similarity=0.636 Sum_probs=12.6
Q ss_pred cCCCcEEEEEccccc
Q 015492 135 TFVKPHVAILDGITM 149 (406)
Q Consensus 135 ~~~kPvIAavnG~a~ 149 (406)
...||||+.+-|..-
T Consensus 250 ~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 250 PIKKPVVSFIAGITA 264 (317)
T ss_pred cCCCcEEEEEecCCC
Confidence 468999999999864
No 158
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=45.60 E-value=7.9 Score=26.38 Aligned_cols=19 Identities=42% Similarity=0.464 Sum_probs=16.4
Q ss_pred hcCCCcCHHHHHHcCccce
Q 015492 202 LTGEKLNGVEMIACGLATH 220 (406)
Q Consensus 202 ltG~~i~A~eA~~~GLv~~ 220 (406)
-||++++-++|.+.||+|.
T Consensus 17 ~tg~~lsv~~A~~~glId~ 35 (45)
T PF00681_consen 17 ETGERLSVEEAIQRGLIDS 35 (45)
T ss_dssp TTTEEEEHHHHHHTTSS-H
T ss_pred CCCeEEcHHHHHHCCCcCH
Confidence 4789999999999999986
No 159
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=44.44 E-value=56 Score=28.02 Aligned_cols=52 Identities=27% Similarity=0.359 Sum_probs=26.2
Q ss_pred HHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEEEEcccc
Q 015492 72 RLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGIT 148 (406)
Q Consensus 72 eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a 148 (406)
.+.+.++.+..||++++|++.-++ ..| ..+++ +..++.... ||||+..-|..
T Consensus 41 ~~~d~l~~~~~D~~t~~I~ly~E~-----~~d---------------~~~f~----~~~~~a~~~-KPVv~lk~Grt 92 (138)
T PF13607_consen 41 DFADLLEYLAEDPDTRVIVLYLEG-----IGD---------------GRRFL----EAARRAARR-KPVVVLKAGRT 92 (138)
T ss_dssp -HHHHHHHHCT-SS--EEEEEES-------S----------------HHHHH----HHHHHHCCC-S-EEEEE----
T ss_pred CHHHHHHHHhcCCCCCEEEEEccC-----CCC---------------HHHHH----HHHHHHhcC-CCEEEEeCCCc
Confidence 355667777889999999988764 001 11222 244445555 99999999873
No 160
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=39.86 E-value=56 Score=31.91 Aligned_cols=80 Identities=13% Similarity=0.155 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHHHHcCC---CcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEE
Q 015492 66 NTSMVGRLKRLYESWEENP---DIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVA 142 (406)
Q Consensus 66 ~~~~~~eL~~~l~~~~~d~---~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIA 142 (406)
......++..+++.+.... .+-+|||.=. |+.+.++.. | +-..+.+++..++.|||+
T Consensus 53 G~~A~~~I~~al~~~~~~~~~~~~Dviii~RG------GGs~eDL~~------------F--N~e~varai~~~~~Pvis 112 (319)
T PF02601_consen 53 GEGAAASIVSALRKANEMGQADDFDVIIIIRG------GGSIEDLWA------------F--NDEEVARAIAASPIPVIS 112 (319)
T ss_pred ccchHHHHHHHHHHHHhccccccccEEEEecC------CCChHHhcc------------c--ChHHHHHHHHhCCCCEEE
Confidence 3455677788888877554 4555555422 222222221 1 123577889999999999
Q ss_pred EEccccccccchhhccCCeEEEeCC
Q 015492 143 ILDGITMGCGAGISLQGMYRVVTDK 167 (406)
Q Consensus 143 avnG~a~GgG~~lal~cD~ria~~~ 167 (406)
+| ||-.-- .-.=+.||+|..|++
T Consensus 113 aI-GHe~D~-ti~D~vAd~ra~TPt 135 (319)
T PF02601_consen 113 AI-GHETDF-TIADFVADLRAPTPT 135 (319)
T ss_pred ec-CCCCCc-hHHHHHHHhhCCCHH
Confidence 87 443321 222344566655553
No 161
>PLN02522 ATP citrate (pro-S)-lyase
Probab=37.54 E-value=81 Score=34.03 Aligned_cols=14 Identities=36% Similarity=0.453 Sum_probs=12.8
Q ss_pred CCCcEEEEEccccc
Q 015492 136 FVKPHVAILDGITM 149 (406)
Q Consensus 136 ~~kPvIAavnG~a~ 149 (406)
..||||+.+-|.+-
T Consensus 249 ~~KPVVa~kaGrsa 262 (608)
T PLN02522 249 VSKPVVAWVSGTCA 262 (608)
T ss_pred CCCCEEEEeccCCC
Confidence 68999999999986
No 162
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=37.42 E-value=63 Score=28.30 Aligned_cols=61 Identities=15% Similarity=0.099 Sum_probs=34.6
Q ss_pred HHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEEEEcccccc
Q 015492 73 LKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMG 150 (406)
Q Consensus 73 L~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~G 150 (406)
..++|..+.+|+++++|++-+.+++=++ .+ ....+...+..... ...++|+|+.|-|...-
T Consensus 61 ~~~~l~~~~~Dp~v~vIlvd~~~G~g~~----~~-----------~A~~l~~a~~~~~~--~~~~~pvVa~v~GT~~d 121 (153)
T PF00549_consen 61 RNEALEIEAADPEVKVILVDIVGGIGSC----ED-----------PAAGLIPAIKEAKA--EGRKKPVVARVCGTNAD 121 (153)
T ss_dssp HHHHHHHHHTSTTESEEEEEEESSSSSH----HH-----------HHHHHHHHHSHCTH--TTT-SEEEEEEESTTCH
T ss_pred HHHHHHHHhcCCCccEEEEEeccccCch----HH-----------HHHHHHHHHHhccc--cCCCCcEEEEeeeecCC
Confidence 3455677788999999999876432111 11 11112221111100 34789999999998754
No 163
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=37.13 E-value=1.2e+02 Score=24.31 Aligned_cols=48 Identities=15% Similarity=0.157 Sum_probs=40.8
Q ss_pred EEEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCC--------cEEEEEEcCC
Q 015492 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPD--------IGFVLMKGAG 95 (406)
Q Consensus 43 v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~--------v~~VVltg~G 95 (406)
+.++..+++.+++++.| |+......+.+.+........ ++.|||--.+
T Consensus 2 ~~~~~~~~v~ii~~~g~-----l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~ 57 (117)
T PF01740_consen 2 IEIETHDGVLIIRLDGP-----LFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSG 57 (117)
T ss_dssp CEEEEETTEEEEEEESE-----ESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETT
T ss_pred CeeEEECCEEEEEEeeE-----EEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEEe
Confidence 46788999999999977 899999999999988877665 7899998776
No 164
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=36.53 E-value=61 Score=33.37 Aligned_cols=57 Identities=12% Similarity=0.137 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEEEE
Q 015492 68 SMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAIL 144 (406)
Q Consensus 68 ~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav 144 (406)
....++.++++.++...++.++|+.=. |+-+.++ +.|. -..+.++++.++.|+|++|
T Consensus 176 ~A~~eIv~aI~~an~~~~~DvlIVaRG------GGSiEDL------------W~FN--dE~vaRAi~~s~iPvISAV 232 (440)
T COG1570 176 GAAEEIVEAIERANQRGDVDVLIVARG------GGSIEDL------------WAFN--DEIVARAIAASRIPVISAV 232 (440)
T ss_pred CcHHHHHHHHHHhhccCCCCEEEEecC------cchHHHH------------hccC--hHHHHHHHHhCCCCeEeec
Confidence 445566666666666666655555321 2223322 2222 2347888999999999988
No 165
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=35.96 E-value=22 Score=26.65 Aligned_cols=41 Identities=15% Similarity=0.158 Sum_probs=32.1
Q ss_pred CCCcHHhhhhheeeCCCCCCCCCCCCcCCCCHHHHhcccCCCCCC
Q 015492 347 VSNDFCEGIRARLVDKDFAPKWDPPSLADVSKDMVDCYFSPFDEL 391 (406)
Q Consensus 347 ~s~d~~egi~afl~ek~r~P~w~~~~~~~v~~~~v~~~~~~~~~~ 391 (406)
++..+..|=-..+ +++|+| |-++ +.++.+++..+.+.|+-+
T Consensus 27 Hs~nCV~Gn~~vF-~~~rkP-WI~P--d~~~ve~i~~vi~sCPSG 67 (74)
T COG3592 27 HSGNCVRGNPKVF-NLGRKP-WIMP--DAVDVEEIVKVIDTCPSG 67 (74)
T ss_pred cccceecCCHhhc-ccCCCC-ccCC--CCCCHHHHHHHHHhCCch
Confidence 3667777777776 666788 9877 778999999999988764
No 166
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=34.88 E-value=1.7e+02 Score=23.08 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=36.5
Q ss_pred EEEEeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCcEEEEEEcCCCCc
Q 015492 44 LVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAF 98 (406)
Q Consensus 44 ~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~VVltg~G~~F 98 (406)
.++..+++.++.+..| |+.....++.+.+..+-.....+.||+--.+-.|
T Consensus 2 ~~~~~~~~~vi~l~G~-----L~f~~~~~~~~~l~~~~~~~~~~~vilDls~v~~ 51 (106)
T TIGR02886 2 EFEVKGDVLIVRLSGE-----LDHHTAERVRRKIDDAIERRPIKHLILNLKNVTF 51 (106)
T ss_pred eEEEECCEEEEEEecc-----cchhhHHHHHHHHHHHHHhCCCCEEEEECCCCcE
Confidence 4577889999999766 6777777788777665444457888887776444
No 167
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=30.52 E-value=1.4e+02 Score=29.18 Aligned_cols=13 Identities=46% Similarity=0.703 Sum_probs=11.3
Q ss_pred CCcEEEEEccccc
Q 015492 137 VKPHVAILDGITM 149 (406)
Q Consensus 137 ~kPvIAavnG~a~ 149 (406)
.||||+..-|..-
T Consensus 233 ~KPVV~lk~Grs~ 245 (300)
T PLN00125 233 EKPVVAFIAGLTA 245 (300)
T ss_pred CCCEEEEEecCCC
Confidence 8999999988863
No 168
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=28.84 E-value=5.6e+02 Score=25.06 Aligned_cols=110 Identities=16% Similarity=0.072 Sum_probs=57.3
Q ss_pred CCCCCCHHHHHHHHHHH-HHHHcCCCcEEEEEEc-CCCCcccCCCh-HHHH----HhhhcCC--------hhhHHHHHHH
Q 015492 61 NLNALNTSMVGRLKRLY-ESWEENPDIGFVLMKG-AGRAFCSGGDV-IALY----QLLNEGK--------FEDFKNFFET 125 (406)
Q Consensus 61 ~~Nal~~~~~~eL~~~l-~~~~~d~~v~~VVltg-~G~~F~~G~Dl-~~~~----~~~~~~~--------~~~~~~~~~~ 125 (406)
..|.++.+-+.+-...+ ..+...+.-++.||-| ..+.|--+-+. ..+. ....... ...-......
T Consensus 121 a~~~i~~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRRTp~~~~~~ 200 (311)
T PF06258_consen 121 APNRITPERLAEAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTSRRTPPEAEAA 200 (311)
T ss_pred CCCcCCHHHHHHHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCCCcHHHHHH
Confidence 45899999888876665 4455555545555544 45666655541 1221 1111111 0011111111
Q ss_pred HHHHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCCeeEecccc
Q 015492 126 LYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPET 175 (406)
Q Consensus 126 ~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~a~f~~pe~ 175 (406)
+. ..+. +.+-+...+|.--+-=.++...||.+|+|+++.=.+.|.
T Consensus 201 L~---~~~~--~~~~~~~~~~~~~nPy~~~La~ad~i~VT~DSvSMvsEA 245 (311)
T PF06258_consen 201 LR---ELLK--DNPGVYIWDGTGENPYLGFLAAADAIVVTEDSVSMVSEA 245 (311)
T ss_pred HH---Hhhc--CCCceEEecCCCCCcHHHHHHhCCEEEEcCccHHHHHHH
Confidence 11 1111 234443446666666788999999999998765434343
No 169
>PF14842 FliG_N: FliG N-terminal domain; PDB: 3HJL_A 3AJC_A 3USY_B.
Probab=28.26 E-value=81 Score=25.70 Aligned_cols=85 Identities=18% Similarity=0.218 Sum_probs=43.4
Q ss_pred HHHHhhcCCCcCHHHHHHcCccceeccCCChHHHHHHHHhhccCCHHHHHHHHHHhcccc----cCChhHHHHHHHHHHH
Q 015492 197 GEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLV----SLDRESVLRKIETIDK 272 (406)
Q Consensus 197 a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~ 272 (406)
|.-|+..|+...++=..+ .+++++..+..+++++...+++.+..++..|.... ..-.........++.+
T Consensus 12 AilLl~Lgee~Aa~vlk~-------l~~~ei~~i~~~ma~l~~v~~~~~~~Vl~EF~~~~~~~~~~~~gg~~~~~~lL~~ 84 (108)
T PF14842_consen 12 AILLLALGEEAAAEVLKH-------LDEEEIERISREMAKLGSVSPEEVEEVLEEFYDEIRAQGGIVSGGRDFARRLLEK 84 (108)
T ss_dssp HHHHHHS-HHHHHHHHHH-------S-HHHHHHHHHHHHT-----HHHHHHHHHHHHHHHHHTT---S-HHHHHHH-HHH
T ss_pred HHHHHHHCHHHHHHHHcc-------CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHccccccChHHHHHHHHHH
Confidence 455555565544443333 35667777888888888899999999999887622 2333344555677778
Q ss_pred hcCcCCHHHHHHHHHh
Q 015492 273 CFSHDTIEEIIDALEN 288 (406)
Q Consensus 273 ~f~~~~~~~i~~~l~~ 288 (406)
.|+.+.+.+|++.+..
T Consensus 85 alg~~~a~~il~~~~~ 100 (108)
T PF14842_consen 85 ALGEEKAKEILDRLEQ 100 (108)
T ss_dssp HS---HHHHH------
T ss_pred HCCHHHHHHHHHHHhc
Confidence 8888888888776653
No 170
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=28.25 E-value=1.4e+02 Score=28.41 Aligned_cols=56 Identities=25% Similarity=0.449 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCCCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEEEEccccc
Q 015492 73 LKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITM 149 (406)
Q Consensus 73 L~~~l~~~~~d~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~ 149 (406)
+.++|+.+-.|++.+.||+-|.= |+. .+++..+|+... .-..-+|||++.+-|...
T Consensus 219 FID~L~vFl~D~~t~GIiliGEI-----GG~-----------AEe~AA~flk~~-----nSg~~~kPVvsFIAG~tA 274 (329)
T KOG1255|consen 219 FIDCLEVFLEDPETEGIILIGEI-----GGS-----------AEEEAAEFLKEY-----NSGSTAKPVVSFIAGVTA 274 (329)
T ss_pred HHHHHHHHhcCcccceEEEEecc-----CCh-----------hhHHHHHHHHHh-----ccCCCCCceeEEeecccC
Confidence 45667777789999999999861 111 122333343321 123568999999988643
No 171
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=27.16 E-value=75 Score=32.64 Aligned_cols=38 Identities=11% Similarity=-0.020 Sum_probs=24.6
Q ss_pred HHHHHhccCCCcEEEEEccccccccchhhccCCeEEEeCC
Q 015492 128 QFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK 167 (406)
Q Consensus 128 ~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~ria~~~ 167 (406)
.+.+++..++.|||++| ||-.- =.-.=+.||.|.+|++
T Consensus 215 ~v~~ai~~~~~Pvis~I-GHE~D-~tl~D~vAd~ra~TPt 252 (438)
T PRK00286 215 AVARAIAASRIPVISAV-GHETD-FTIADFVADLRAPTPT 252 (438)
T ss_pred HHHHHHHcCCCCEEEec-cCCCC-ccHHHHhhhccCCChH
Confidence 57788999999999987 34321 1123345666666654
No 172
>PRK00964 tetrahydromethanopterin S-methyltransferase subunit A; Provisional
Probab=26.48 E-value=1.1e+02 Score=28.39 Aligned_cols=68 Identities=16% Similarity=0.230 Sum_probs=44.4
Q ss_pred cEEEEEeCcEEEEEEcCCCC-------CCCCCHHHHH---HHHHHHHHHHcCCCcEEEEEEcCC-CCcccCCChHHHHH
Q 015492 42 QVLVEGRAKSRAAILNRPSN-------LNALNTSMVG---RLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQ 109 (406)
Q Consensus 42 ~v~~~~~~~v~~Itlnrp~~-------~Nal~~~~~~---eL~~~l~~~~~d~~v~~VVltg~G-~~F~~G~Dl~~~~~ 109 (406)
++.-+.+..|+++||..... .-|+...... .+...+..+-.|+++|.+|++|.. +..-+|--|..+..
T Consensus 18 Y~vGd~~SpVAV~Tl~S~~~~~~~~~agaAi~G~~~TENlGIEKvI~NvisNpNIRflilcG~Ev~GH~tGqsl~aL~~ 96 (225)
T PRK00964 18 YVVGDPESPVAVVTLGSHLLDQPIIDAGAAISGPCHTENLGIEKVIANVISNPNIRFLILCGSEVQGHITGQSLKALHE 96 (225)
T ss_pred eEeCCCCCceEEEEccccccccchhhcCceeecccccccccHHHHHHHHhcCCCceEEEEecCccCCccccHHHHHHHH
Confidence 34445566799999976421 1223333332 266778888899999999999987 66666666665543
No 173
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.87 E-value=4.5e+02 Score=24.46 Aligned_cols=42 Identities=12% Similarity=0.077 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhccCC--CcEEEEEccccccccchhhccCCeE
Q 015492 121 NFFETLYQFVYLQGTFV--KPHVAILDGITMGCGAGISLQGMYR 162 (406)
Q Consensus 121 ~~~~~~~~l~~~i~~~~--kPvIAavnG~a~GgG~~lal~cD~r 162 (406)
+....+...+..+...+ .+.=..+-|.|+||++.+.+++..-
T Consensus 91 ~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~ 134 (236)
T COG0412 91 EVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP 134 (236)
T ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC
Confidence 34444555555555555 3333457799999999999998873
No 174
>PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A ....
Probab=23.70 E-value=47 Score=31.12 Aligned_cols=72 Identities=13% Similarity=0.067 Sum_probs=41.4
Q ss_pred HHHHHHHcC-CCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEEEEccc-ccccc
Q 015492 75 RLYESWEEN-PDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGI-TMGCG 152 (406)
Q Consensus 75 ~~l~~~~~d-~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~-a~GgG 152 (406)
++|+++..+ .+|-.||..+.-+.+..|+|..-... +.--|-.--.-|+|. |.||.
T Consensus 110 ~AL~~~g~~~~dIthlv~vs~TG~~~PglD~~l~~~-----------------------LgL~~~v~R~~i~~~GC~gg~ 166 (226)
T PF00195_consen 110 KALAEAGLDPSDITHLVTVSCTGIAAPGLDARLINR-----------------------LGLRPDVQRTPIFGMGCAGGA 166 (226)
T ss_dssp HHHHHHTS-GGGECEEEEEESSSSECS-HHHHHHHH-----------------------HT--TTSEEEEEES-GGGHHH
T ss_pred HHHHHcCCCCcccceEEEEecCCcCCCchhHHHHhc-----------------------CCCCCCcEEEEEeccchhhHH
Confidence 456666545 35777776665557788888653322 222223333446665 88888
Q ss_pred chhhccCCeEEEeCCee
Q 015492 153 AGISLQGMYRVVTDKTV 169 (406)
Q Consensus 153 ~~lal~cD~ria~~~a~ 169 (406)
..|..+.||.-+.++++
T Consensus 167 ~~L~~A~~~~~~~p~a~ 183 (226)
T PF00195_consen 167 AGLRRAKDIARANPGAR 183 (226)
T ss_dssp HHHHHHHHHHHHSTT-E
T ss_pred HHHHHHHHHHhCCccce
Confidence 99999998876655544
No 175
>PRK06091 membrane protein FdrA; Validated
Probab=23.53 E-value=1.9e+02 Score=30.89 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=15.9
Q ss_pred HHHHHhccCCCcEEEEEccccc
Q 015492 128 QFVYLQGTFVKPHVAILDGITM 149 (406)
Q Consensus 128 ~l~~~i~~~~kPvIAavnG~a~ 149 (406)
+++.....+.||||+..-|..-
T Consensus 270 ~fl~aar~~~KPVVvlk~Grs~ 291 (555)
T PRK06091 270 KIINAMKATGKPVVALFLGYTP 291 (555)
T ss_pred HHHHHHhhCCCCEEEEEecCCc
Confidence 4445455569999999998754
No 176
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=20.95 E-value=1.4e+02 Score=31.77 Aligned_cols=75 Identities=19% Similarity=0.144 Sum_probs=46.6
Q ss_pred CCcEEEEEEcCCCCcccCCChHHHHHhhhcCChhhHHHHHHHHHHHHHHhccCCCcEEEEEccccccccchhhccCCeE
Q 015492 84 PDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYR 162 (406)
Q Consensus 84 ~~v~~VVltg~G~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~lal~cD~r 162 (406)
|+.-++|-|-..=-+-.|.+..++. ..+.+....-+.++.+.+..+.++..|+|.+||-+..---.++..--+++
T Consensus 323 P~~~VlVaTvraLK~hgg~~~~~l~----~en~Eal~sGl~NL~RHIenvr~FGvPvVVAINKFd~DTe~Ei~~I~~~c 397 (557)
T PRK13505 323 PDAVVIVATVRALKMHGGVAKDDLK----EENVEALKKGFANLERHIENIRKFGVPVVVAINKFVTDTDAEIAALKELC 397 (557)
T ss_pred CCEEEEEeehHHHHHcCCCChhhcc----ccCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 4433444443332334455544432 23455566667778888888889999999999988876666665554444
Done!