Query 015494
Match_columns 406
No_of_seqs 301 out of 1041
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 13:36:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015494.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015494hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 5.7E-30 1.9E-34 206.0 4.7 64 213-276 11-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 7E-30 2.4E-34 206.3 4.4 64 213-276 14-78 (78)
3 2ayd_A WRKY transcription fact 99.9 1.5E-23 5.2E-28 168.6 3.0 42 365-406 1-42 (76)
4 1wj2_A Probable WRKY transcrip 99.9 1.4E-23 4.9E-28 169.5 2.0 42 365-406 4-45 (78)
5 2rpr_A Flywch-type zinc finger 66.0 2.4 8.2E-05 33.5 1.7 50 214-275 22-74 (87)
6 1cz6_A Protein (androctonin); 50.1 4.6 0.00016 25.7 0.6 6 400-405 16-21 (26)
7 1xiw_B T-cell surface glycopro 34.8 6.3 0.00021 31.0 -0.7 27 379-405 17-53 (79)
8 1odh_A MGCM1; transcription fa 31.5 34 0.0012 31.1 3.5 13 266-278 148-160 (174)
9 1qxn_A SUD, sulfide dehydrogen 26.8 17 0.00056 30.4 0.5 23 375-397 110-133 (137)
10 3kgb_A Thymidylate synthase 1/ 14.2 27 0.00092 34.2 -1.0 11 380-390 114-124 (294)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.96 E-value=5.7e-30 Score=205.96 Aligned_cols=64 Identities=55% Similarity=1.029 Sum_probs=60.0
Q ss_pred CCCCCCCccccccCcccCCCCCCCCCccccCCcccccchheeccc-CCceEEEEecccCCCCCCC
Q 015494 213 SMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPKPQ 276 (406)
Q Consensus 213 ~~~~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~akK~Ver~~-dg~i~~i~Y~G~HnH~~p~ 276 (406)
..+.+|||+|||||||.|||++|||+|||||+.+|+|+|+|||+. |+++++|+|+|+|||+.|.
T Consensus 11 ~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 11 FDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp SSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 446789999999999999999999999999999999999999986 7789999999999999885
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.96 E-value=7e-30 Score=206.29 Aligned_cols=64 Identities=53% Similarity=0.998 Sum_probs=59.6
Q ss_pred CCCCCCCccccccCcccCCCCCCCCCccccCCcccccchheeccc-CCceEEEEecccCCCCCCC
Q 015494 213 SMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPKPQ 276 (406)
Q Consensus 213 ~~~~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~akK~Ver~~-dg~i~~i~Y~G~HnH~~p~ 276 (406)
..+.+|||+|||||||.|||++|||+|||||+++|+|+|+|||+. |+++++|+|+|+|||+.|.
T Consensus 14 ~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 14 VDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp CCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred CCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 346789999999999999999999999999999999999999975 7889999999999999873
No 3
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.87 E-value=1.5e-23 Score=168.63 Aligned_cols=42 Identities=52% Similarity=0.925 Sum_probs=40.4
Q ss_pred ceeEEecccccccCCCcccccccCccccCCCCCCCceeeccC
Q 015494 365 PRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRYVSNLMI 406 (406)
Q Consensus 365 prvvvqt~se~dildDGYrWRKYGQK~VKGnp~PRsYYrCT~ 406 (406)
.||+|+|.++++++||||+|||||||.||||+|||+|||||.
T Consensus 1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~ 42 (76)
T 2ayd_A 1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS 42 (76)
T ss_dssp CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECS
T ss_pred CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCC
Confidence 489999999999999999999999999999999999999984
No 4
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.87 E-value=1.4e-23 Score=169.47 Aligned_cols=42 Identities=64% Similarity=0.986 Sum_probs=37.3
Q ss_pred ceeEEecccccccCCCcccccccCccccCCCCCCCceeeccC
Q 015494 365 PRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRYVSNLMI 406 (406)
Q Consensus 365 prvvvqt~se~dildDGYrWRKYGQK~VKGnp~PRsYYrCT~ 406 (406)
.+|+|||.++++++||||+|||||||.||||+|||+|||||.
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~ 45 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT 45 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCc
Confidence 479999999999999999999999999999999999999984
No 5
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=66.03 E-value=2.4 Score=33.52 Aligned_cols=50 Identities=16% Similarity=0.361 Sum_probs=32.1
Q ss_pred CCCCCCccccccCcccCCCCCCCCCccccCC---cccccchheecccCCceEEEEecccCCCCCC
Q 015494 214 MPSDDGYNWRKYGQKHVKGSEFPRSYYKCTH---PNCEVKKLFERSHDGQITEIIYKGTHDHPKP 275 (406)
Q Consensus 214 ~~~~DGy~WRKYGQK~ikgs~~pRsYYrCt~---~~C~akK~Ver~~dg~i~~i~Y~G~HnH~~p 275 (406)
.+.-|||...+--+ ...+.|.+|+. .+|.|+=.... ++ ++..+.|||++.
T Consensus 22 ~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~~----~~~~~~HnH~p~ 74 (87)
T 2rpr_A 22 FLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--HR----IMVMRSHCHQPD 74 (87)
T ss_dssp EEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--TE----EEECSCCSSCCC
T ss_pred EEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--CC----EECCCCcCCCCc
Confidence 45568887765221 13468999997 37999744332 22 456789999743
No 6
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=50.06 E-value=4.6 Score=25.71 Aligned_cols=6 Identities=0% Similarity=-0.264 Sum_probs=5.3
Q ss_pred ceeecc
Q 015494 400 YVSNLM 405 (406)
Q Consensus 400 sYYrCT 405 (406)
+|||||
T Consensus 16 cyykct 21 (26)
T 1cz6_A 16 CYYKCT 21 (26)
T ss_dssp CEEEEC
T ss_pred eEEEcc
Confidence 799998
No 7
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=34.81 E-value=6.3 Score=31.04 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=19.9
Q ss_pred CCcccccccCccc--------cCC--CCCCCceeecc
Q 015494 379 DDGYRWRKYGQKV--------VRG--NPNPRYVSNLM 405 (406)
Q Consensus 379 dDGYrWRKYGQK~--------VKG--np~PRsYYrCT 405 (406)
..+++|-|-|... ++| ..-||.||.|.
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~ 53 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCN 53 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEec
Confidence 6779999999752 332 33499999994
No 8
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=31.53 E-value=34 Score=31.05 Aligned_cols=13 Identities=54% Similarity=1.099 Sum_probs=10.7
Q ss_pred ecccCCCCCCCcc
Q 015494 266 YKGTHDHPKPQLS 278 (406)
Q Consensus 266 Y~G~HnH~~p~~~ 278 (406)
-+|.|+||+|...
T Consensus 148 aKG~HDHpRPe~k 160 (174)
T 1odh_A 148 SKGEHDHPRPETK 160 (174)
T ss_dssp EECCCCSCCCCCH
T ss_pred cccccCCCCCCCc
Confidence 4799999999853
No 9
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=26.79 E-value=17 Score=30.36 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=20.1
Q ss_pred cccCCCccc-ccccCccccCCCCC
Q 015494 375 VDILDDGYR-WRKYGQKVVRGNPN 397 (406)
Q Consensus 375 ~dildDGYr-WRKYGQK~VKGnp~ 397 (406)
+-+++.||. |++.|-.+++++++
T Consensus 110 v~~l~GG~~~W~~~g~p~~~~~~~ 133 (137)
T 1qxn_A 110 IYNSEGGMDKWLEEGLPSLDRSHH 133 (137)
T ss_dssp EEEESSCHHHHHHTTCCEECCCCC
T ss_pred eEEEcCcHHHHHHCCCCccccccc
Confidence 446899997 99999999999986
No 10
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} SCOP: d.117.1.1
Probab=14.24 E-value=27 Score=34.18 Aligned_cols=11 Identities=36% Similarity=1.334 Sum_probs=9.0
Q ss_pred CcccccccCcc
Q 015494 380 DGYRWRKYGQK 390 (406)
Q Consensus 380 DGYrWRKYGQK 390 (406)
=||+||.||-+
T Consensus 114 YG~QwR~~~~~ 124 (294)
T 3kgb_A 114 YGFQWRHFGAR 124 (294)
T ss_dssp HHHHHHSBTCC
T ss_pred cchhhhcCCCc
Confidence 48899999864
Done!