BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015495
(405 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IB7|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 348 bits (894), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 181/368 (49%), Positives = 251/368 (68%), Gaps = 3/368 (0%)
Query: 13 RDVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANL 72
++V IV RTP+G FLG+LS L ATKLGSIAI+ A+++A + V+E + GNVL
Sbjct: 8 KEVVIVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGE 67
Query: 73 GQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNA 132
GQAP RQA LGAG+P S CTT+NKVCASG+KAIM+ASQS+ G DV+VAGGMESMSN
Sbjct: 68 GQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMSNV 127
Query: 133 PKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVL 192
P + R + G L D ++KDGL DVYN MG+CAE A++ +I R QD +A+
Sbjct: 128 PYVM--NRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAYAIN 185
Query: 193 SFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGG 252
S+ R AA +AG F E++PV V+ +G+P +V +DE + D +K+ KL+ F++ G
Sbjct: 186 SYTRSKAAWEAGKFGNEVIPVTVTV-KGQPDVVVKEDEEYKRVDFSKVPKLKTVFQKENG 244
Query: 253 TVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKA 312
TVTA NAS+++DGAAALVL++ + +L + +A+I +ADAA P F AP A
Sbjct: 245 TVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPVYAASMV 304
Query: 313 ISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILV 372
+ + GL+ + +E+NEAF++V LAN K+L ++P KVN++GGAV+LGHP+G SGARI+
Sbjct: 305 LKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVG 364
Query: 373 TLLGVLRQ 380
L L+Q
Sbjct: 365 HLTHALKQ 372
>pdb|2IBU|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 345 bits (885), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 180/368 (48%), Positives = 250/368 (67%), Gaps = 3/368 (0%)
Query: 13 RDVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANL 72
++V IV RTP+G FLG+LS L ATKLGSIAI+ A+++A + V+E + GNVL
Sbjct: 8 KEVVIVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGE 67
Query: 73 GQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNA 132
GQAP RQA LGAG+P S CTT+NKV ASG+KAIM+ASQS+ G DV+VAGGMESMSN
Sbjct: 68 GQAPTRQAVLGAGLPISTPCTTINKVXASGMKAIMMASQSLMCGHQDVMVAGGMESMSNV 127
Query: 133 PKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVL 192
P + R + G L D ++KDGL DVYN MG+CAE A++ +I R QD +A+
Sbjct: 128 PYVM--NRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAYAIN 185
Query: 193 SFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGG 252
S+ R AA +AG F E++PV V+ +G+P +V +DE + D +K+ KL+ F++ G
Sbjct: 186 SYTRSKAAWEAGKFGNEVIPVTVTV-KGQPDVVVKEDEEYKRVDFSKVPKLKTVFQKENG 244
Query: 253 TVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKA 312
TVTA NAS+++DGAAALVL++ + +L + +A+I +ADAA P F AP A
Sbjct: 245 TVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPVYAASMV 304
Query: 313 ISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILV 372
+ + GL+ + +E+NEAF++V LAN K+L ++P KVN++GGAV+LGHP+G SGARI+
Sbjct: 305 LKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVG 364
Query: 373 TLLGVLRQ 380
L L+Q
Sbjct: 365 HLTHALKQ 372
>pdb|2F2S|A Chain A, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|B Chain B, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|C Chain C, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|D Chain D, Human Mitochondrial Acetoacetyl-Coa Thiolase
Length = 406
Score = 343 bits (881), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 182/371 (49%), Positives = 251/371 (67%), Gaps = 5/371 (1%)
Query: 12 PR--DVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLS 69
PR +V IV RTP+G FLG+LS L ATKLGSIAI+ A+++A + V+E + GNVL
Sbjct: 16 PRGSEVVIVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQ 75
Query: 70 ANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESM 129
GQAP RQA LGAG+P S CTT+NKV ASG+KAIM+ASQS+ G DV+VAGGMESM
Sbjct: 76 GGEGQAPTRQAVLGAGLPISTPCTTINKVXASGMKAIMMASQSLMCGHQDVMVAGGMESM 135
Query: 130 SNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDF 189
SN P + R + G L D ++KDGL DVYN MG+CAE A++ +I R QD +
Sbjct: 136 SNVPYVM--NRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAY 193
Query: 190 AVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKE 249
A+ S+ R AA +AG F E++PV V+ +G+P +V +DE + D +K+ KL+ F++
Sbjct: 194 AINSYTRSKAAWEAGKFGNEVIPVTVTV-KGQPDVVVKEDEEYKRVDFSKVPKLKTVFQK 252
Query: 250 NGGTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAI 309
GTVTA NAS+++DGAAALVL++ + +L + +A+I +ADAA P F AP A
Sbjct: 253 ENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPVYAA 312
Query: 310 PKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGAR 369
+ + GL+ + +E+NEAF++V LAN K+L ++P KVN++GGAV+LGHP+G SGAR
Sbjct: 313 SMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGAR 372
Query: 370 ILVTLLGVLRQ 380
I+ L L+Q
Sbjct: 373 IVGHLTHALKQ 383
>pdb|4E1L|A Chain A, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|B Chain B, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|C Chain C, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|D Chain D, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
Length = 395
Score = 324 bits (831), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 185/366 (50%), Positives = 240/366 (65%), Gaps = 7/366 (1%)
Query: 13 RDVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANL 72
+DV IV RTP+G F G + SA +LG+IA++ A+ R ++ S + EV GNVL L
Sbjct: 5 KDVVIVSAVRTPIGSFGGVFKNTSAVQLGTIAVKEAISRVGLNLSEIDEVIIGNVLQTGL 64
Query: 73 GQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNA 132
GQ ARQ A+ AGIPNSV TVNK+C SGLK++ LA+QSI G NDV++AGG E+MS A
Sbjct: 65 GQNVARQIAINAGIPNSVPSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTENMSQA 124
Query: 133 PKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVL 192
P + AR GS++G+ ++VD ML DGL D +N MG AE A + TRE QD A+
Sbjct: 125 PYIVPTARFGSKMGNITMVDSMLTDGLIDAFNQYHMGITAENIATKFEFTREMQDKLALE 184
Query: 193 SFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDE--GLG-KFDPAKLRKLRPSFKE 249
S + A F EIVPV+V RGK TI DKDE LG F+ L KL+P+FK+
Sbjct: 185 SQNKAENAIKNNRFKEEIVPVDVLIRRGKIETI-DKDEYPKLGMTFE--GLSKLKPAFKK 241
Query: 250 NGGTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAI 309
+ GTVTAGNAS I+DGAA L+L+S +K +LG++ +AKI YA A PE+ T P A
Sbjct: 242 D-GTVTAGNASGINDGAAMLILMSQQKADELGIRPLAKIKSYASAGVEPEVMGTGPIPAT 300
Query: 310 PKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGAR 369
KA+ AGL + +D E NEAFA ALA + L ++ K+NV+GGA+ALGHP+G SGAR
Sbjct: 301 RKALKKAGLSINDIDLIEANEAFAAQALAVKNELQIDSSKLNVNGGAIALGHPIGASGAR 360
Query: 370 ILVTLL 375
ILVTL+
Sbjct: 361 ILVTLI 366
>pdb|4DD5|A Chain A, Biosynthetic Thiolase (Thla1) From Clostridium Difficile
Length = 396
Score = 313 bits (801), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 174/372 (46%), Positives = 238/372 (63%), Gaps = 10/372 (2%)
Query: 13 RDVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANL 72
R+V I ART +G F G S+SA +LG A + A+KRAN+ P ++ E G VL+A L
Sbjct: 7 REVVIASAARTAVGSFGGAFKSVSAVELGVTAAKEAIKRANITPDMIDESLLGGVLTAGL 66
Query: 73 GQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNA 132
GQ ARQ ALGAGIP T+N VC SGL+++ +ASQ I LG D+++ GG E+MS +
Sbjct: 67 GQNIARQIALGAGIPVEKPAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGAENMSMS 126
Query: 133 PKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVL 192
P + AR G+R+G + VD M+KDGL D++N+ MG AE AEQ +ITRE QD+ A+
Sbjct: 127 PYLVPSARYGARMGDAAFVDSMIKDGLSDIFNNYHMGITAENIAEQWNITREEQDELALA 186
Query: 193 SFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPA----KLRKLRPSFK 248
S + AQ G F EIVPV + +G T+VDKDE P KL KLRP+FK
Sbjct: 187 SQNKAEKAQAEGKFDEEIVPVVIKGRKG--DTVVDKDE---YIKPGTTMEKLAKLRPAFK 241
Query: 249 ENGGTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALA 308
++ GTVTAGNAS I+DGAA LV+++ EK +LG++ +A I Y A P++ P A
Sbjct: 242 KD-GTVTAGNASGINDGAAMLVVMAKEKAEELGIEPLATIVSYGTAGVDPKIMGYGPVPA 300
Query: 309 IPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGA 368
KA+ A + +D E NEAFA ++A + L ++ +KVNV+GGA+A+GHP+GCSGA
Sbjct: 301 TKKALEAANMTIEDIDLVEANEAFAAQSVAVIRDLNIDMNKVNVNGGAIAIGHPIGCSGA 360
Query: 369 RILVTLLGVLRQ 380
RIL TLL +++
Sbjct: 361 RILTTLLYEMKR 372
>pdb|1WL4|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase Complexed With
Coa
pdb|1WL5|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase
Length = 397
Score = 300 bits (768), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 177/367 (48%), Positives = 229/367 (62%), Gaps = 3/367 (0%)
Query: 15 VCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQ 74
V IV ART +G F G L+++ LGS I+ LKRA V P V EV FG+VL+A GQ
Sbjct: 8 VVIVSAARTIIGSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHVLAAGCGQ 67
Query: 75 APARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPK 134
P RQA++GAGIP SV + + SGLKA+ LA QSI +G + ++VAGGME+MS AP
Sbjct: 68 NPVRQASVGAGIPYSVPAWSCQMIXGSGLKAVCLAVQSIGIGDSSIVVAGGMENMSKAP- 126
Query: 135 YLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSF 194
+LA R G ++G L D +L DGL D +++C MG AE A++ ++RE+QD AVLS
Sbjct: 127 HLAYLRTGVKIGEMPLTDSILCDGLTDAFHNCHMGITAENVAKKWQVSREDQDKVAVLSQ 186
Query: 195 ERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENG-GT 253
R AQ AG F EIVPV VS +G D+ G A + KL+P F +G GT
Sbjct: 187 NRTENAQKAGHFDKEIVPVLVSTRKGLIEVKTDEFPRHGSNIEA-MSKLKPYFLTDGTGT 245
Query: 254 VTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAI 313
VT NAS I+DGAAA+VL+ + K GL +A+I ++ P + P AI +A+
Sbjct: 246 VTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGVEPSIMGIGPIPAIKQAV 305
Query: 314 SNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVT 373
+ AG VD +EINEAFA V+ A K LGLNP+KVN+ GGA+ALGHPLG SG RILVT
Sbjct: 306 TKAGWSLEDVDIFEINEAFAAVSAAIVKELGLNPEKVNIEGGAIALGHPLGASGCRILVT 365
Query: 374 LLGVLRQ 380
LL L +
Sbjct: 366 LLHTLER 372
>pdb|2VU2|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate
Length = 392
Score = 268 bits (685), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 163/369 (44%), Positives = 218/369 (59%), Gaps = 9/369 (2%)
Query: 15 VCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQ 74
+ I ART +G F G ++ A +LG+ I A L+RA V V EV G VL A GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 75 APARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPK 134
PARQAA+ AG+P +N++C SGL+A+ L Q I G +IVAGGMESMS AP
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP- 123
Query: 135 YLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSF 194
+ A R G ++G ++D M+KDGL D + MGT AE A+Q ++R+ QD FAV S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 195 ERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGL---GKFDPAKLRKLRPSFKENG 251
+ AAQ G F EIVP V +G VD DE + D + KLRP+F + G
Sbjct: 184 NKAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLD--SMAKLRPAFDKEG 239
Query: 252 GTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPK 311
TVTAGNAS ++DGAAA +L+S + + G+Q + +I +A P++ T P A K
Sbjct: 240 -TVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRK 298
Query: 312 AISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARIL 371
A+ AG + +D E NEAFA A A K LG +P VNV+GGA+A+GHP+G SGARIL
Sbjct: 299 ALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARIL 358
Query: 372 VTLLGVLRQ 380
TLL +++
Sbjct: 359 NTLLFEMKR 367
>pdb|1DLU|A Chain A, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|B Chain B, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|C Chain C, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|D Chain D, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLV|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
Length = 389
Score = 268 bits (685), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 163/369 (44%), Positives = 218/369 (59%), Gaps = 9/369 (2%)
Query: 15 VCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQ 74
+ I ART +G F G ++ A +LG+ I A L+RA V V EV G VL A GQ
Sbjct: 2 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 61
Query: 75 APARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPK 134
PARQAA+ AG+P +N++C SGL+A+ L Q I G +IVAGGMESMS AP
Sbjct: 62 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP- 120
Query: 135 YLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSF 194
+ A R G ++G ++D M+KDGL D + MGT AE A+Q ++R+ QD FAV S
Sbjct: 121 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 180
Query: 195 ERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGL---GKFDPAKLRKLRPSFKENG 251
+ AAQ G F EIVP V +G VD DE + D + KLRP+F + G
Sbjct: 181 NKAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLD--SMAKLRPAFDKEG 236
Query: 252 GTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPK 311
TVTAGNAS ++DGAAA +L+S + + G+Q + +I +A P++ T P A K
Sbjct: 237 -TVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRK 295
Query: 312 AISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARIL 371
A+ AG + +D E NEAFA A A K LG +P VNV+GGA+A+GHP+G SGARIL
Sbjct: 296 ALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARIL 355
Query: 372 VTLLGVLRQ 380
TLL +++
Sbjct: 356 NTLLFEMKR 364
>pdb|2WKU|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant
Length = 392
Score = 266 bits (681), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 162/369 (43%), Positives = 218/369 (59%), Gaps = 9/369 (2%)
Query: 15 VCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQ 74
+ I ART +G F G ++ A +LG+ I A L+RA V V EV G VL A GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 75 APARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPK 134
PARQAA+ AG+P +N++C SGL+A+ L Q I G +IVAGGMESMS AP
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP- 123
Query: 135 YLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSF 194
+ A R G ++G ++D M+KDGL D + MGT AE A+Q ++R+ QD FAV S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 195 ERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGL---GKFDPAKLRKLRPSFKENG 251
+ AAQ G F EIVP V +G VD DE + D + KLRP+F + G
Sbjct: 184 NKAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLD--SMAKLRPAFDKEG 239
Query: 252 GTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPK 311
TVTAGNAS ++DGAAA +L+S + + G+Q + +I +A P++ T P A K
Sbjct: 240 -TVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRK 298
Query: 312 AISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARIL 371
A+ AG + +D E +EAFA A A K LG +P VNV+GGA+A+GHP+G SGARIL
Sbjct: 299 ALERAGWKIGDLDLVEAHEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARIL 358
Query: 372 VTLLGVLRQ 380
TLL +++
Sbjct: 359 NTLLFEMKR 367
>pdb|2WKV|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A
Length = 392
Score = 266 bits (680), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 162/369 (43%), Positives = 218/369 (59%), Gaps = 9/369 (2%)
Query: 15 VCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQ 74
+ I ART +G F G ++ A +LG+ I A L+RA V V EV G VL A GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 75 APARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPK 134
PARQAA+ AG+P +N++C SGL+A+ L Q I G +IVAGGMESMS AP
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP- 123
Query: 135 YLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSF 194
+ A R G ++G ++D M+KDGL D + MGT AE A+Q ++R+ QD FAV S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 195 ERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGL---GKFDPAKLRKLRPSFKENG 251
+ AAQ G F EIVP V +G VD DE + D + KLRP+F + G
Sbjct: 184 NKAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLD--SMAKLRPAFDKEG 239
Query: 252 GTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPK 311
TVTAGNAS ++DGAAA +L+S + + G+Q + +I +A P++ T P A K
Sbjct: 240 -TVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRK 298
Query: 312 AISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARIL 371
A+ AG + +D E +EAFA A A K LG +P VNV+GGA+A+GHP+G SGARIL
Sbjct: 299 ALERAGWKIGDLDLVEADEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARIL 358
Query: 372 VTLLGVLRQ 380
TLL +++
Sbjct: 359 NTLLFEMKR 367
>pdb|1M1T|A Chain A, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|B Chain B, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|C Chain C, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|D Chain D, Biosynthetic Thiolase, Q64a Mutant
Length = 392
Score = 266 bits (679), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 162/369 (43%), Positives = 217/369 (58%), Gaps = 9/369 (2%)
Query: 15 VCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQ 74
+ I ART +G F G ++ A +LG+ I A L+RA V V EV G VL A G
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGA 64
Query: 75 APARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPK 134
PARQAA+ AG+P +N++C SGL+A+ L Q I G +IVAGGMESMS AP
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP- 123
Query: 135 YLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSF 194
+ A R G ++G ++D M+KDGL D + MGT AE A+Q ++R+ QD FAV S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 195 ERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGL---GKFDPAKLRKLRPSFKENG 251
+ AAQ G F EIVP V +G VD DE + D + KLRP+F + G
Sbjct: 184 NKAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLD--SMAKLRPAFDKEG 239
Query: 252 GTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPK 311
TVTAGNAS ++DGAAA +L+S + + G+Q + +I +A P++ T P A K
Sbjct: 240 -TVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRK 298
Query: 312 AISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARIL 371
A+ AG + +D E NEAFA A A K LG +P VNV+GGA+A+GHP+G SGARIL
Sbjct: 299 ALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARIL 358
Query: 372 VTLLGVLRQ 380
TLL +++
Sbjct: 359 NTLLFEMKR 367
>pdb|2WL5|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 265 bits (677), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 162/369 (43%), Positives = 218/369 (59%), Gaps = 9/369 (2%)
Query: 15 VCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQ 74
+ I ART +G F G ++ A +LG+ I A L+RA V V EV G VL A GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 75 APARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPK 134
PARQAA+ AG+P +N++C SGL+A+ L Q I G +IVAGGMESMS AP
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP- 123
Query: 135 YLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSF 194
+ A R G ++G ++D M+KDGL D + MGT AE A+Q ++R+ QD FAV S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 195 ERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGL---GKFDPAKLRKLRPSFKENG 251
+ AAQ G F EIVP V +G VD DE + D + KLRP+F + G
Sbjct: 184 NKAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLD--SMAKLRPAFDKEG 239
Query: 252 GTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPK 311
TVTAGNAS ++DGAAA +L+S + + G+Q + +I +A P++ T P A K
Sbjct: 240 -TVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRK 298
Query: 312 AISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARIL 371
A+ AG + +D E NEAFA A A K LG +P VNV+GGA+A+G+P+G SGARIL
Sbjct: 299 ALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGNPIGASGARIL 358
Query: 372 VTLLGVLRQ 380
TLL +++
Sbjct: 359 NTLLFEMKR 367
>pdb|1M1O|A Chain A, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|B Chain B, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|C Chain C, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|D Chain D, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M3K|A Chain A, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|B Chain B, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|C Chain C, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|D Chain D, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3Z|A Chain A, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|B Chain B, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|C Chain C, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|D Chain D, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|2VTZ|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A
Length = 392
Score = 265 bits (677), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 162/369 (43%), Positives = 217/369 (58%), Gaps = 9/369 (2%)
Query: 15 VCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQ 74
+ I ART +G F G ++ A +LG+ I A L+RA V V EV G VL A GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 75 APARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPK 134
PARQAA+ AG+P +N++ SGL+A+ L Q I G +IVAGGMESMS AP
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLAGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP- 123
Query: 135 YLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSF 194
+ A R G ++G ++D M+KDGL D + MGT AE A+Q ++R+ QD FAV S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 195 ERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGL---GKFDPAKLRKLRPSFKENG 251
+ AAQ G F EIVP V +G VD DE + D + KLRP+F + G
Sbjct: 184 NKAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLD--SMAKLRPAFDKEG 239
Query: 252 GTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPK 311
TVTAGNAS ++DGAAA +L+S + + G+Q + +I +A P++ T P A K
Sbjct: 240 -TVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRK 298
Query: 312 AISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARIL 371
A+ AG + +D E NEAFA A A K LG +P VNV+GGA+A+GHP+G SGARIL
Sbjct: 299 ALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARIL 358
Query: 372 VTLLGVLRQ 380
TLL +++
Sbjct: 359 NTLLFEMKR 367
>pdb|2WL4|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 265 bits (676), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 162/369 (43%), Positives = 217/369 (58%), Gaps = 9/369 (2%)
Query: 15 VCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQ 74
+ I ART +G F G ++ A +LG+ I A L+RA V V EV G VL A GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 75 APARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPK 134
PARQAA+ AG+P +N++C SGL+A+ L Q I G +IVAGGMESMS AP
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP- 123
Query: 135 YLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSF 194
+ A R G ++G ++D M+KDGL D + MGT AE A+Q ++R+ QD FAV S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 195 ERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGL---GKFDPAKLRKLRPSFKENG 251
+ AAQ G F EIVP V +G VD DE + D + KLRP+F + G
Sbjct: 184 NKAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLD--SMAKLRPAFDKEG 239
Query: 252 GTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPK 311
TVTAGNAS ++DGAAA +L+S + + G+Q + +I +A P++ T P A K
Sbjct: 240 -TVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRK 298
Query: 312 AISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARIL 371
A+ AG + +D E NEAFA A A K LG +P VNV+GGA+A+G P+G SGARIL
Sbjct: 299 ALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPIGASGARIL 358
Query: 372 VTLLGVLRQ 380
TLL +++
Sbjct: 359 NTLLFEMKR 367
>pdb|1M4S|A Chain A, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|B Chain B, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|C Chain C, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|D Chain D, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4T|A Chain A, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|B Chain B, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|C Chain C, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|D Chain D, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1NL7|A Chain A, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|B Chain B, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|C Chain C, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|D Chain D, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1OU6|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|2VU0|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU1|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate
Length = 392
Score = 265 bits (676), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 162/369 (43%), Positives = 217/369 (58%), Gaps = 9/369 (2%)
Query: 15 VCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQ 74
+ I ART +G F G ++ A +LG+ I A L+RA V V EV G VL A GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 75 APARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPK 134
PARQAA+ AG+P +N++ SGL+A+ L Q I G +IVAGGMESMS AP
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP- 123
Query: 135 YLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSF 194
+ A R G ++G ++D M+KDGL D + MGT AE A+Q ++R+ QD FAV S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 195 ERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGL---GKFDPAKLRKLRPSFKENG 251
+ AAQ G F EIVP V +G VD DE + D + KLRP+F + G
Sbjct: 184 NKAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLD--SMAKLRPAFDKEG 239
Query: 252 GTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPK 311
TVTAGNAS ++DGAAA +L+S + + G+Q + +I +A P++ T P A K
Sbjct: 240 -TVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRK 298
Query: 312 AISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARIL 371
A+ AG + +D E NEAFA A A K LG +P VNV+GGA+A+GHP+G SGARIL
Sbjct: 299 ALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARIL 358
Query: 372 VTLLGVLRQ 380
TLL +++
Sbjct: 359 NTLLFEMKR 367
>pdb|1QFL|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1DM3|A Chain A, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|B Chain B, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|C Chain C, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|D Chain D, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
Length = 389
Score = 264 bits (675), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 162/369 (43%), Positives = 217/369 (58%), Gaps = 9/369 (2%)
Query: 15 VCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQ 74
+ I ART +G F G ++ A +LG+ I A L+RA V V EV G VL A GQ
Sbjct: 2 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 61
Query: 75 APARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPK 134
PARQAA+ AG+P +N++ SGL+A+ L Q I G +IVAGGMESMS AP
Sbjct: 62 NPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP- 120
Query: 135 YLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSF 194
+ A R G ++G ++D M+KDGL D + MGT AE A+Q ++R+ QD FAV S
Sbjct: 121 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 180
Query: 195 ERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGL---GKFDPAKLRKLRPSFKENG 251
+ AAQ G F EIVP V +G VD DE + D + KLRP+F + G
Sbjct: 181 NKAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLD--SMAKLRPAFDKEG 236
Query: 252 GTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPK 311
TVTAGNAS ++DGAAA +L+S + + G+Q + +I +A P++ T P A K
Sbjct: 237 -TVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRK 295
Query: 312 AISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARIL 371
A+ AG + +D E NEAFA A A K LG +P VNV+GGA+A+GHP+G SGARIL
Sbjct: 296 ALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARIL 355
Query: 372 VTLLGVLRQ 380
TLL +++
Sbjct: 356 NTLLFEMKR 364
>pdb|2WL4|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 264 bits (675), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 162/369 (43%), Positives = 217/369 (58%), Gaps = 9/369 (2%)
Query: 15 VCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQ 74
+ I ART +G F G ++ A +LG+ I A L+RA V V EV G VL A GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 75 APARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPK 134
PARQAA+ AG+P +N++C SGL+A+ L Q I G +IVAGGMESMS AP
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP- 123
Query: 135 YLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSF 194
+ A R G ++G ++D M+KDGL D + MGT AE A+Q ++R+ QD FAV S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 195 ERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGL---GKFDPAKLRKLRPSFKENG 251
+ AAQ G F EIVP V +G VD DE + D + KLRP+F + G
Sbjct: 184 NKAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLD--SMAKLRPAFDKEG 239
Query: 252 GTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPK 311
TVTAGNAS ++DGAAA +L+S + + G+Q + +I +A P++ T P A K
Sbjct: 240 -TVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRK 298
Query: 312 AISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARIL 371
A+ AG + +D E NEAFA A A K LG +P VNV+GGA+A+G P+G SGARIL
Sbjct: 299 ALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPIGASGARIL 358
Query: 372 VTLLGVLRQ 380
TLL +++
Sbjct: 359 NTLLFEMKR 367
>pdb|2WL6|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant
Length = 392
Score = 263 bits (672), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 161/369 (43%), Positives = 218/369 (59%), Gaps = 9/369 (2%)
Query: 15 VCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQ 74
+ I ART +G F G ++ A +LG+ I A L+RA V V EV G VL A GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 75 APARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPK 134
PARQAA+ AG+P +N++C SGL+A+ L Q I G +IVAGGMESMS AP
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP- 123
Query: 135 YLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSF 194
+ A R G ++G ++D M+KDGL D + MGT AE A+Q ++R+ QD FAV S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 195 ERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGL---GKFDPAKLRKLRPSFKENG 251
+ AAQ G F EIVP V +G VD DE + D + KLRP+F + G
Sbjct: 184 NKAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLD--SMAKLRPAFDKEG 239
Query: 252 GTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPK 311
TVTAGNAS ++DGAAA +L+S + + G+Q + +I +A P++ T P A K
Sbjct: 240 -TVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRK 298
Query: 312 AISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARIL 371
A+ AG + +D E +EAFA A A K LG +P VNV+GGA+A+G+P+G SGARIL
Sbjct: 299 ALERAGWKIGDLDLVEAHEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGNPIGASGARIL 358
Query: 372 VTLLGVLRQ 380
TLL +++
Sbjct: 359 NTLLFEMKR 367
>pdb|2WL5|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 261 bits (667), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 161/369 (43%), Positives = 217/369 (58%), Gaps = 9/369 (2%)
Query: 15 VCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQ 74
+ I ART +G F G ++ A +LG+ I A L+RA V V EV G VL A GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 75 APARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPK 134
PARQAA+ AG+P +N++ SGL+A+ L Q I G +IVAGGMESMS AP
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP- 123
Query: 135 YLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSF 194
+ A R G ++G ++D M+KDGL D + MGT AE A+Q ++R+ QD FAV S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 195 ERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGL---GKFDPAKLRKLRPSFKENG 251
+ AAQ G F EIVP V +G VD DE + D + KLRP+F + G
Sbjct: 184 NKAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLD--SMAKLRPAFDKEG 239
Query: 252 GTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPK 311
TVTAGNAS ++DGAAA +L+S + + G+Q + +I +A P++ T P A K
Sbjct: 240 -TVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRK 298
Query: 312 AISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARIL 371
A+ AG + +D E NEAFA A A K LG +P VNV+GGA+A+G+P+G SGARIL
Sbjct: 299 ALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGNPIGASGARIL 358
Query: 372 VTLLGVLRQ 380
TLL +++
Sbjct: 359 NTLLFEMKR 367
>pdb|3SS6|A Chain A, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
pdb|3SS6|B Chain B, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
Length = 394
Score = 261 bits (667), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 150/373 (40%), Positives = 222/373 (59%), Gaps = 13/373 (3%)
Query: 13 RDVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANL 72
+V I R+P+G F G L +++ +L ++ A+KR V+P V EV G+ +
Sbjct: 5 HNVVITAAVRSPIGTFGGALKNVTPVELAVPVLQEAVKRGGVEPHEVDEVILGHCIQRTD 64
Query: 73 GQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNA 132
AR AAL AG P++V T+ + +SG++AIM A+ IQLG+++V+VAGG+E+MS++
Sbjct: 65 EANTARTAALAAGFPDTVTGYTIQRQXSSGMQAIMSAAMQIQLGVSEVVVAGGVEAMSSS 124
Query: 133 PKYLAEARKGSRLGHDSLVDGMLKDGLWDVYND----CSMGTCAELCAEQHSITRENQDD 188
P L + R G RL H G ++D +W+V D MG AE EQ+ ITRE QD+
Sbjct: 125 PYALKQHRWGQRLQH-----GEIRDTVWEVLEDPIHHIMMGETAENLVEQYEITREEQDE 179
Query: 189 FAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEG-LGKFDPAKLRKLRPSF 247
A+ S + A ++G F +IVP+ + R + + KDE KL L+P+F
Sbjct: 180 VALRSHTLALKAIESGYFDDQIVPITIKERRKE--VVFSKDEHPRADITAEKLAGLKPAF 237
Query: 248 KENGGTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPAL 307
+++G +VTAGNAS ++DG+A LVL+S EK + GLQ +A+I GY+ A P++ PA
Sbjct: 238 RKDG-SVTAGNASGLNDGSAVLVLMSEEKAKEKGLQPLARIVGYSVAGVDPKIMGIGPAP 296
Query: 308 AIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSG 367
AI K + D EINEAFA LA +K L L+ +KVNV+G V LGHP+GC+G
Sbjct: 297 AIRKGLEKVDWSLEDADLLEINEAFAAQYLAVEKELDLDREKVNVNGSGVGLGHPIGCTG 356
Query: 368 ARILVTLLGVLRQ 380
ARI V+L+ L++
Sbjct: 357 ARITVSLIHELKR 369
>pdb|2WL4|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 261 bits (666), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 161/369 (43%), Positives = 216/369 (58%), Gaps = 9/369 (2%)
Query: 15 VCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQ 74
+ I ART +G F G ++ A +LG+ I A L+RA V V EV G VL A GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 75 APARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPK 134
PARQAA+ AG+P +N++ SGL+A+ L Q I G +IVAGGMESMS AP
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP- 123
Query: 135 YLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSF 194
+ A R G ++G ++D M+KDGL D + MGT AE A+Q ++R+ QD FAV S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 195 ERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGL---GKFDPAKLRKLRPSFKENG 251
+ AAQ G F EIVP V +G VD DE + D + KLRP+F + G
Sbjct: 184 NKAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLD--SMAKLRPAFDKEG 239
Query: 252 GTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPK 311
TVTAGNAS ++DGAAA +L+S + + G+Q + +I +A P++ T P A K
Sbjct: 240 -TVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRK 298
Query: 312 AISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARIL 371
A+ AG + +D E NEAFA A A K LG +P VNV+GGA+A+G P+G SGARIL
Sbjct: 299 ALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPIGASGARIL 358
Query: 372 VTLLGVLRQ 380
TLL +++
Sbjct: 359 NTLLFEMKR 367
>pdb|2WL4|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 260 bits (665), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 161/369 (43%), Positives = 216/369 (58%), Gaps = 9/369 (2%)
Query: 15 VCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQ 74
+ I ART +G F G ++ A +LG+ I A L+RA V V EV G VL A GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 75 APARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPK 134
PARQAA+ AG+P +N++ SGL+A+ L Q I G +IVAGGMESMS AP
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP- 123
Query: 135 YLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSF 194
+ A R G ++G ++D M+KDGL D + MGT AE A+Q ++R+ QD FAV S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 195 ERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGL---GKFDPAKLRKLRPSFKENG 251
+ AAQ G F EIVP V +G VD DE + D + KLRP+F + G
Sbjct: 184 NKAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLD--SMAKLRPAFDKEG 239
Query: 252 GTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPK 311
TVTAGNAS ++DGAAA +L+S + + G+Q + +I +A P++ T P A K
Sbjct: 240 -TVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRK 298
Query: 312 AISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARIL 371
A+ AG + +D E NEAFA A A K LG +P VNV+GGA+A+G P+G SGARIL
Sbjct: 299 ALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPIGASGARIL 358
Query: 372 VTLLGVLRQ 380
TLL +++
Sbjct: 359 NTLLFEMKR 367
>pdb|2WKT|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 254 bits (649), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 162/369 (43%), Positives = 217/369 (58%), Gaps = 9/369 (2%)
Query: 15 VCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQ 74
+ I ART +G F G ++ A +LG+ I A L+RA V V EV G VL A GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 75 APARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPK 134
PARQAA+ AG+P +N++C SGL+A+ L Q I G +IVAGGMESMS AP
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP- 123
Query: 135 YLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSF 194
+ A R G ++G ++D M+KDGL D + MGT AE A+Q ++R+ QD FAV S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 195 ERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGL---GKFDPAKLRKLRPSFKENG 251
+ AAQ G F EIVP V +G VD DE + D + KLRP+F + G
Sbjct: 184 NKAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLD--SMAKLRPAFDKEG 239
Query: 252 GTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPK 311
TVTAGNAS ++DGAAA +L+S + + G+Q + +I +A P++ T P A K
Sbjct: 240 -TVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRK 298
Query: 312 AISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARIL 371
A+ AG + +D E EAFA A A K LG +P VNV+GGA+A+GHP+G SGARIL
Sbjct: 299 ALERAGWKIGDLDLVEAAEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARIL 358
Query: 372 VTLLGVLRQ 380
TLL +++
Sbjct: 359 NTLLFEMKR 367
>pdb|2WKT|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 250 bits (639), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 161/369 (43%), Positives = 216/369 (58%), Gaps = 9/369 (2%)
Query: 15 VCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQ 74
+ I ART +G F G ++ A +LG+ I A L+RA V V EV G VL A GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 75 APARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPK 134
PARQAA+ AG+P +N++ SGL+A+ L Q I G +IVAGGMESMS AP
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP- 123
Query: 135 YLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSF 194
+ A R G ++G ++D M+KDGL D + MGT AE A+Q ++R+ QD FAV S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 195 ERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGL---GKFDPAKLRKLRPSFKENG 251
+ AAQ G F EIVP V +G VD DE + D + KLRP+F + G
Sbjct: 184 NKAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLD--SMAKLRPAFDKEG 239
Query: 252 GTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPK 311
TVTAGNAS ++DGAAA +L+S + + G+Q + +I +A P++ T P A K
Sbjct: 240 -TVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRK 298
Query: 312 AISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARIL 371
A+ AG + +D E EAFA A A K LG +P VNV+GGA+A+GHP+G SGARIL
Sbjct: 299 ALERAGWKIGDLDLVEAAEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARIL 358
Query: 372 VTLLGVLRQ 380
TLL +++
Sbjct: 359 NTLLFEMKR 367
>pdb|1ULQ|A Chain A, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|B Chain B, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|C Chain C, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|D Chain D, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|E Chain E, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|F Chain F, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|G Chain G, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|H Chain H, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
Length = 401
Score = 220 bits (561), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 149/377 (39%), Positives = 213/377 (56%), Gaps = 14/377 (3%)
Query: 14 DVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANL- 72
+ IV RTP+G G L+S+ L + A+ + R+ V V++V+ G A
Sbjct: 3 EAWIVEAVRTPIGKHGGALASVRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGED 62
Query: 73 GQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNA 132
+ AR A L AG P V TVN++C SGL+A+ A+++I G V + G+ESMS A
Sbjct: 63 NRNVARMALLLAGFPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSRA 122
Query: 133 PKYLAEARKGSRLGHDSLVDGML-----KDGLWDVYNDCSMGTCAELCAEQHSITRENQD 187
P + + +G G+ + D L + +Y SMG AE AE + I RE QD
Sbjct: 123 PYAVPKPERGFPTGNLVMYDTTLGWRFVNPKMQALYGTESMGETAENLAEMYGIRREEQD 182
Query: 188 DFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPA--KLRKLRP 245
FA+LS ++ + A + G F E+VPV V RGK +V++DEG + D + KL LRP
Sbjct: 183 RFALLSHQKAVRAWEEGRFQDEVVPVPVK--RGKEEILVEQDEG-PRRDTSLEKLAALRP 239
Query: 246 SFKENGGTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAP 305
F+E GGTVTAGN+S ++DGAAA++LVS + GL+ +A++ A A P + P
Sbjct: 240 VFRE-GGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGLRPLARVRAIAVAGVPPRIMGIGP 298
Query: 306 ALAIPKAISNAGLEASQVDCYEINEAFAVVALA--NQKLLGLNPDKVNVHGGAVALGHPL 363
A KA+ AGL S + E+NEAFA ALA + L + ++N +GGA+ALGHPL
Sbjct: 299 VPATRKALERAGLSFSDLGLIELNEAFAAQALAVLREWSLSMEDQRLNPNGGAIALGHPL 358
Query: 364 GCSGARILVTLLGVLRQ 380
G SGARIL TL+ +R+
Sbjct: 359 GASGARILTTLVHEMRR 375
>pdb|2IIK|A Chain A, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
pdb|2IIK|B Chain B, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
Length = 418
Score = 212 bits (539), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 155/391 (39%), Positives = 216/391 (55%), Gaps = 34/391 (8%)
Query: 1 MAPAAASDSIKPRDVCIVGVARTPM-----GGFLGTLSSLSATKLGSIAIEAALKRANVD 55
MAP A++ DV +V RT + GGF T + +L S + A LK N+
Sbjct: 23 MAPQASAA-----DVVVVHGRRTAICRAGRGGFKDT----TPDELLSAVMTAVLKDVNLR 73
Query: 56 PSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQL 115
P + ++ GNVL G AR A + IP +V +TVN+ C+SGL+A+ + I+
Sbjct: 74 PEQLGDICVGNVLQPGAGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRN 133
Query: 116 GINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDC--SMGTCAE 173
G D+ +A G+ESMS A + G+ + L + + DC MG +E
Sbjct: 134 GSYDIGMACGVESMSLADR-----------GNPGNITSRLME--KEKARDCLIPMGITSE 180
Query: 174 LCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVE--VSAGRG-KPSTIVDKDE 230
AE+ I+RE QD FA+ S ++ AQ G F EIVPV V +G K S V +DE
Sbjct: 181 NVAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSITVTQDE 240
Query: 231 GLGKFDPAK-LRKLRPSFKENGGTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKIT 289
G+ + L KL+P+FK++G T TAGN+S +SDGAAA++L K +LGL ++ +
Sbjct: 241 GIRPSTTMEGLAKLKPAFKKDGST-TAGNSSQVSDGAAAILLARRSKAEELGLPILGVLR 299
Query: 290 GYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDK 349
YA P++ PA AIP A+ AGL S VD +EINEAFA A + L L P+K
Sbjct: 300 SYAVVGVPPDIMGIGPAYAIPVALQKAGLTVSDVDIFEINEAFASQAAYCVEKLRLPPEK 359
Query: 350 VNVHGGAVALGHPLGCSGARILVTLLGVLRQ 380
VN GGAVALGHPLGC+GAR ++TLL L++
Sbjct: 360 VNPLGGAVALGHPLGCTGARQVITLLNELKR 390
>pdb|1WDK|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 390
Score = 211 bits (536), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 145/383 (37%), Positives = 206/383 (53%), Gaps = 29/383 (7%)
Query: 9 SIKPRDVCIVGVARTPMGGFLGTLS-SLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGN 66
S+ PRDV IV RTPMG G + + A + + I L+R + VDP V++V +G
Sbjct: 1 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGC 60
Query: 67 V-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGG 125
V + G AR A+L IP++ TV+++C S + A+ A+Q+I G DV V GG
Sbjct: 61 VNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGG 120
Query: 126 MESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYN---DCSMGTCAELCAEQHSIT 182
+E M GH S++ G+ + +Y MG AE+ + H I+
Sbjct: 121 VEHM----------------GHVSMMHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGIS 164
Query: 183 RENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPA--KL 240
RE QD FAV S + A G F EI+P++ G I D DE + + D L
Sbjct: 165 REQQDAFAVRSHQLAHKATVEGKFKDEIIPMQGYDENGFLK-IFDYDETI-RPDTTLESL 222
Query: 241 RKLRPSFKENGGTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEM 300
L+P+F GGTVTAG +S I+DGA+ ++++S ++ LGL+ +A I A A P +
Sbjct: 223 AALKPAFNPKGGTVTAGTSSQITDGASCMIVMSAQRAKDLGLEPLAVIRSMAVAGVDPAI 282
Query: 301 FTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVA---LANQKLLGLNPDKVNVHGGAV 357
P A KA+ AGL + +D E+NEAFA A L + K+L +KVN+HGGA+
Sbjct: 283 MGYGPVPATQKALKRAGLNMADIDFIELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAI 342
Query: 358 ALGHPLGCSGARILVTLLGVLRQ 380
ALGHP GCSGARI TLL V++Q
Sbjct: 343 ALGHPFGCSGARISGTLLNVMKQ 365
>pdb|1AFW|A Chain A, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
pdb|1AFW|B Chain B, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
Length = 393
Score = 199 bits (505), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 131/383 (34%), Positives = 198/383 (51%), Gaps = 33/383 (8%)
Query: 11 KPRDVCIVGVARTPMG-GFLGTLSSLSATKLGSIAIEAALKR----ANVDPSLVQEVFFG 65
+P DV IV R+ +G GF G ++ L + + R D +L++EV G
Sbjct: 8 RPEDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACG 67
Query: 66 NVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGG 125
NVL+ G R A L +GIP S +N+ C+SGL A+ + I++G D+ +A G
Sbjct: 68 NVLNVGAGATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALG 127
Query: 126 MESMSNAPKYL-------AEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQ 178
+ESM+N K + +E + +R L+ MG E A
Sbjct: 128 VESMTNNYKNVNPLGMISSEELQKNREAKKCLI---------------PMGITNENVAAN 172
Query: 179 HSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEG-LGKFDP 237
I+R++QD+FA S+++ A++ G F EI+P+++ G +I DEG
Sbjct: 173 FKISRKDQDEFAANSYQKAYKAKNEGLFEDEILPIKLPDG-----SICQSDEGPRPNVTA 227
Query: 238 AKLRKLRPSFKENGGTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQA 297
L +RP+F ++ GT TAGNAS +SDG A ++L +L L V+ + +
Sbjct: 228 ESLSSIRPAFIKDRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVP 287
Query: 298 PEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAV 357
PE+ PA AIPK + GL+ +D +EINEAFA AL LG++ +KVN GGA+
Sbjct: 288 PEIMGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDLNKVNPRGGAI 347
Query: 358 ALGHPLGCSGARILVTLLGVLRQ 380
ALGHPLGC+GAR + T+L L++
Sbjct: 348 ALGHPLGCTGARQVATILRELKK 370
>pdb|1PXT|A Chain A, The 2.8 Angstroms Structure Of Peroxisomal 3-Ketoacyl-Coa
Thiolase Of Saccharomyces Cerevisiae: A Five Layered
A-B-A- B-A Structure, Constructed From Two Core Domains
Of Identical Topology
pdb|1PXT|B Chain B, The 2.8 Angstroms Structure Of Peroxisomal 3-Ketoacyl-Coa
Thiolase Of Saccharomyces Cerevisiae: A Five Layered
A-B-A- B-A Structure, Constructed From Two Core Domains
Of Identical Topology
Length = 390
Score = 198 bits (504), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 131/383 (34%), Positives = 198/383 (51%), Gaps = 33/383 (8%)
Query: 11 KPRDVCIVGVARTPMG-GFLGTLSSLSATKLGSIAIEAALKR----ANVDPSLVQEVFFG 65
+P DV IV R+ +G GF G ++ L + + R D +L++EV G
Sbjct: 5 RPEDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACG 64
Query: 66 NVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGG 125
NVL+ G R A L +GIP S +N+ C+SGL A+ + I++G D+ +A G
Sbjct: 65 NVLNVGAGATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALG 124
Query: 126 MESMSNAPKYL-------AEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQ 178
+ESM+N K + +E + +R L+ MG E A
Sbjct: 125 VESMTNNYKNVNPLGMISSEELQKNREAKKCLI---------------PMGITNENVAAN 169
Query: 179 HSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEG-LGKFDP 237
I+R++QD+FA S+++ A++ G F EI+P+++ G +I DEG
Sbjct: 170 FKISRKDQDEFAANSYQKAYKAKNEGLFEDEILPIKLPDG-----SICQSDEGPRPNVTA 224
Query: 238 AKLRKLRPSFKENGGTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQA 297
L +RP+F ++ GT TAGNAS +SDG A ++L +L L V+ + +
Sbjct: 225 ESLSSIRPAFIKDRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVP 284
Query: 298 PEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAV 357
PE+ PA AIPK + GL+ +D +EINEAFA AL LG++ +KVN GGA+
Sbjct: 285 PEIMGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDLNKVNPRGGAI 344
Query: 358 ALGHPLGCSGARILVTLLGVLRQ 380
ALGHPLGC+GAR + T+L L++
Sbjct: 345 ALGHPLGCTGARQVATILRELKK 367
>pdb|2WUA|A Chain A, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
pdb|2WUA|B Chain B, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
Length = 440
Score = 197 bits (502), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 133/376 (35%), Positives = 204/376 (54%), Gaps = 23/376 (6%)
Query: 14 DVCIVGVARTPM-GGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANL 72
DV IV R+P+ G L + + ++A +++ N++P+ V ++ G+VL A
Sbjct: 34 DVVIVAAYRSPLCKAKRGGLKDTYPDDILAPVLKALIEKTNINPAEVGDIVVGSVLGAGS 93
Query: 73 GQA-PARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSN 131
+A R AA AG P +V TVN+ C+SGL+A+ + +I+ G D+ + G+ESM+
Sbjct: 94 QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTA 153
Query: 132 APKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDC--SMGTCAELCAEQHSITRENQDDF 189
P + + V+ +K DC MG +E A++ SITR+ QD
Sbjct: 154 NP-----------MAWEGSVNPKVK--TMAQAQDCLLPMGITSENVAQKFSITRQEQDQA 200
Query: 190 AVLSFERGIAAQDAGAFAWEIVPVEVS-----AGRGKPSTIVDKDEGLGKFDPAKLRKLR 244
AV S + AA AG F EI+P++ G KP TI D A L KL+
Sbjct: 201 AVGSHRKTAAATAAGRFKDEIIPIKTKIVDPKTGDEKPVTISVDDGIRPGTSLADLAKLK 260
Query: 245 PSFKENGGTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTA 304
P F+++G T TAG +S +SDGA A++L+ L+ GL ++ +A P +
Sbjct: 261 PVFRKDGST-TAGTSSQVSDGAGAVLLMKRSIALQKGLPILGVFRTFAAVGVPPSIMGIG 319
Query: 305 PALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLG 364
PA+AIP A+ AGL+ +D +EINEAFA + QK L ++P K+NV+GGA+A+GHPLG
Sbjct: 320 PAVAIPAAVKAAGLQIDDIDLFEINEAFASQFVYCQKKLEIDPQKINVNGGAMAIGHPLG 379
Query: 365 CSGARILVTLLGVLRQ 380
+GAR + TLL +++
Sbjct: 380 ATGARCVATLLHEMKR 395
>pdb|2WU9|A Chain A, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
pdb|2WU9|B Chain B, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
Length = 442
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 135/377 (35%), Positives = 206/377 (54%), Gaps = 25/377 (6%)
Query: 14 DVCIVGVARTPM-GGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANL 72
DV IV RTP+ G L + + A +++ N++PS V ++ G VL+
Sbjct: 31 DVVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNPSEVGDIVVGTVLAPGS 90
Query: 73 GQA-PARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSN 131
+A R AA AG P +V TVN+ C+SGL+A+ + +I+ G D+ + G+ESM+
Sbjct: 91 QRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTT 150
Query: 132 APKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDC--SMGTCAELCAEQHSITRENQDDF 189
P + + V+ +K + +C MG +E A++ ++R+ QD
Sbjct: 151 NP-----------MAWEGSVNPAVKK--FAQAQNCLLPMGVTSENVAQRFGVSRQEQDQA 197
Query: 190 AVLSFERGIAAQDAGAFAWEIVPVEVS-----AGRGKPSTIVDKDEGLGKFDP-AKLRKL 243
AV S + AA AG F EI+PV+ G KP T V D+G+ A L KL
Sbjct: 198 AVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPIT-VSVDDGIRPTTTLASLGKL 256
Query: 244 RPSFKENGGTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTT 303
+P FK++G T TAGN+S +SDGA A++L+ ++ GL V+ +A P +
Sbjct: 257 KPVFKKDG-TTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAAVGVDPAIMGI 315
Query: 304 APALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPL 363
PA+AIP A+ AGLE +D +EINEAFA + + LGL+P+K+NV+GGA+A+GHPL
Sbjct: 316 GPAVAIPAAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGAMAIGHPL 375
Query: 364 GCSGARILVTLLGVLRQ 380
G +GAR + TLL +++
Sbjct: 376 GATGARCVATLLHEMKR 392
>pdb|2C7Y|A Chain A, Plant Enzyme
pdb|2C7Y|B Chain B, Plant Enzyme
pdb|2C7Z|A Chain A, Plant Enzyme Crystal Form Ii
Length = 404
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 135/377 (35%), Positives = 206/377 (54%), Gaps = 25/377 (6%)
Query: 14 DVCIVGVARTPM-GGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANL 72
DV IV RTP+ G L + + A +++ N++PS V ++ G VL+
Sbjct: 14 DVVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNPSEVGDIVVGTVLAPGS 73
Query: 73 GQA-PARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSN 131
+A R AA AG P +V TVN+ C+SGL+A+ + +I+ G D+ + G+ESM+
Sbjct: 74 QRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTT 133
Query: 132 APKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDC--SMGTCAELCAEQHSITRENQDDF 189
P + + V+ +K + +C MG +E A++ ++R+ QD
Sbjct: 134 NP-----------MAWEGSVNPAVKK--FAQAQNCLLPMGVTSENVAQRFGVSRQEQDQA 180
Query: 190 AVLSFERGIAAQDAGAFAWEIVPVEVS-----AGRGKPSTIVDKDEGLGKFDP-AKLRKL 243
AV S + AA AG F EI+PV+ G KP T V D+G+ A L KL
Sbjct: 181 AVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPIT-VSVDDGIRPTTTLASLGKL 239
Query: 244 RPSFKENGGTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTT 303
+P FK++G T TAGN+S +SDGA A++L+ ++ GL V+ +A P +
Sbjct: 240 KPVFKKDG-TTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAAVGVDPAIMGI 298
Query: 304 APALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPL 363
PA+AIP A+ AGLE +D +EINEAFA + + LGL+P+K+NV+GGA+A+GHPL
Sbjct: 299 GPAVAIPAAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGAMAIGHPL 358
Query: 364 GCSGARILVTLLGVLRQ 380
G +GAR + TLL +++
Sbjct: 359 GATGARCVATLLHEMKR 375
>pdb|3GOA|A Chain A, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
pdb|3GOA|B Chain B, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
Length = 387
Score = 167 bits (424), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 137/383 (35%), Positives = 185/383 (48%), Gaps = 47/383 (12%)
Query: 15 VCIVGVARTPMGGFLG-TLSSLSATKLGSIAIEAALKRANVDPSL----VQEVFFGNVLS 69
V IV RTP G G ++ A L + + L R +PSL + ++++G V
Sbjct: 4 VVIVDAIRTPXGRSKGGAFRNVRAEDLSAHLXRSLLAR---NPSLTAATLDDIYWGCVQQ 60
Query: 70 A-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMES 128
G AR AAL A IP+SV TVN++C S +A+ A++ I G V + GG+E
Sbjct: 61 TLEQGFNIARNAALLAEIPHSVPAVTVNRLCGSSXQALHDAARXIXTGDAQVCLVGGVEH 120
Query: 129 MSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDD 188
+ P G H L + K G AE + H I+RE QD
Sbjct: 121 XGHVP-----XSHGVDF-HPGLSRNVAKAA-------GXXGLTAEXLSRLHGISREXQDQ 167
Query: 189 FAVLSFERGIAAQDAGAFAWEIVPVEVSAGRG-----------KPSTIVDKDEGLGKFDP 237
FA S R AA +GAF EI+P G +P T V+
Sbjct: 168 FAARSHARAWAATQSGAFKTEIIPTGGHDADGVLKQFNYDEVIRPETTVEA--------- 218
Query: 238 AKLRKLRPSFKENGGTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQA 297
L LRP+F GTVTAG +S++SDGAAA ++ S + +LGL+ A+I A
Sbjct: 219 --LSTLRPAFDPVSGTVTAGTSSALSDGAAAXLVXSESRARELGLKPRARIRSXAVVGCD 276
Query: 298 PEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNP---DKVNVHG 354
P + P A A+ AGL AS +D +E NEAFA L K LGL +K+N++G
Sbjct: 277 PSIXGYGPVPASKLALKKAGLSASDIDVFEXNEAFAAQILPCIKDLGLXEQIDEKINLNG 336
Query: 355 GAVALGHPLGCSGARILVTLLGV 377
GA+ALGHPLGCSGARI TL+ +
Sbjct: 337 GAIALGHPLGCSGARISTTLINL 359
>pdb|3SVK|A Chain A, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
pdb|3SVK|B Chain B, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
Length = 407
Score = 159 bits (401), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 129/392 (32%), Positives = 188/392 (47%), Gaps = 58/392 (14%)
Query: 22 RTPMGGFL-GTLSSLSATKLGSIAIEAALKR--ANVDPSLVQEVFFGNVLS-ANLGQAPA 77
RTP G G+L+ + L + + L+R ++D +L+ ++ G V + G A
Sbjct: 16 RTPRGKQKNGSLTEVKPLNL-VVGLVDELRRRYPDLDETLISDMILGVVSPVGDQGGDIA 74
Query: 78 RQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPK--- 134
R A L AG+P + +N+ CASGL+A+ A+Q ++ G +D+++AGG+ESMS P
Sbjct: 75 RTAVLAAGLPETTGGVQLNRFCASGLEAVNTAAQKVRSGWDDLVLAGGVESMSRVPMGSD 134
Query: 135 ---YLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAV 191
+ + R+G G A+L A +RE+ D +A+
Sbjct: 135 GGAWATDPETNYRIGF------------------VPQGIGADLIATLEGFSREDVDAYAL 176
Query: 192 LSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGL------------------- 232
S ++ AA G FA +VPV G I+D DE +
Sbjct: 177 RSQQKAAAAWSGGYFAKSVVPVRDQNGL----VILDHDEHMRPDTTMEGLAKLKTAFDGV 232
Query: 233 ---GKFDPAKLRKLRPSFKENGGTVTAGNASSISDGAAALVLVSGEKVLK-LGLQVIAKI 288
G FD L+K K N T GN+S I DGAA LVLV EK K GL A+I
Sbjct: 233 GEMGGFDDVALQKYHWVEKINH-VHTGGNSSGIVDGAA-LVLVGSEKAGKSQGLTPRARI 290
Query: 289 TGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPD 348
A + P + T P A K + AGL +D +E+NEAFA V L QK L + +
Sbjct: 291 VATATSGSDPVIMLTGPTPATRKVLDRAGLTIDDIDLFELNEAFASVVLKFQKDLNIPDE 350
Query: 349 KVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 380
K+NV+GGA+A+GHPLG +GA I T++ L +
Sbjct: 351 KLNVNGGAIAMGHPLGATGAMITGTMVDELER 382
>pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
pdb|1J3N|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
Length = 408
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 10/117 (8%)
Query: 262 ISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAP-----ALAIPKAISNA 316
+ +GA LVL + E K G ++ A++ G+ +A A + P ALA+ +A+ +A
Sbjct: 229 MGEGAGVLVLEAYEHAKKRGARIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDA 288
Query: 317 GLEASQVDCYEINEAFAVVA-----LANQKLLGLNPDKVNVHGGAVALGHPLGCSGA 368
G+ QV + V LA +++ G + ++ V +GH LG +GA
Sbjct: 289 GIAPEQVGYINAHGTSTPVGDRAEVLAIKRVFGDHAKRLMVSSTKSMIGHLLGAAGA 345
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 9/68 (13%)
Query: 63 FFGNVLSANLGQAPARQAALGAGI--PNSVVCTTVNKVCASGLKAIMLASQSIQLGINDV 120
FF ++ AN+ A A+ G P+S V T CA+G A+ A + IQLG D+
Sbjct: 130 FFIPMMIANMASA---HIAMRYGFTGPSSTVVTA----CATGADALGSALRMIQLGEADL 182
Query: 121 IVAGGMES 128
++AGG E+
Sbjct: 183 VLAGGTEA 190
>pdb|3O04|A Chain A, Crystal Structure Of The Beta-Keto-Acyl Carrier Protein
Synthase Ii (Lmo2201) From Listeria Monocytogenes
Length = 413
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 55/136 (40%), Gaps = 21/136 (15%)
Query: 244 RPSFKENGGTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTT 303
RP K+ G + I +GA ++L E G ++ A+I GY A +
Sbjct: 220 RPFDKDRDGFI-------IGEGAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAP 272
Query: 304 AP-----ALAIPKAISNAGLEASQVDCYE-------INEAFAVVALANQKLLGLNPDKVN 351
AP A A AI +AGL +VD N+ + A+ + + G + K+
Sbjct: 273 APNGEGAARAXKXAIDDAGLTPDKVDYINAHGTSTPYNDEYETQAI--KTVFGEHAKKLA 330
Query: 352 VHGGAVALGHPLGCSG 367
+ GH LG SG
Sbjct: 331 ISSTKSXTGHTLGASG 346
>pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae
pdb|1OXH|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|B Chain B, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|C Chain C, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|D Chain D, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
Length = 430
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 91 VCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMES 128
VC ++N C+S AI A +SI+ G DV++ GG E+
Sbjct: 175 VCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEA 212
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 13/133 (9%)
Query: 258 NASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPA-----LAIPKA 312
N + +G+ LVL S E K G ++A++ GY + A M + P AI A
Sbjct: 246 NGFVMGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLA 305
Query: 313 ISNAGLEASQVDCYEINEAFAVVALANQK-----LLGLNPDKVNVHGGAVALGHPLGCSG 367
+ A + QV Y +N A AN+K ++ + +V V GH LG +G
Sbjct: 306 LEEAEISPEQV-AY-VN-AHGTSTPANEKGESGAIVAVLGKEVPVSSTKSFTGHLLGAAG 362
Query: 368 ARILVTLLGVLRQ 380
A + + +R
Sbjct: 363 AVEAIVTIEAMRH 375
>pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl
Carrier Protein] Synthase Ii From Streptococcus
Pneumoniae
Length = 431
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 91 VCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMES 128
VC ++N C+S AI A +SI+ G DV++ GG E+
Sbjct: 176 VCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEA 213
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 13/133 (9%)
Query: 258 NASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPA-----LAIPKA 312
N + +G+ LVL S E K G ++A++ GY + A M + P AI A
Sbjct: 247 NGFVMGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLA 306
Query: 313 ISNAGLEASQVDCYEINEAFAVVALANQK-----LLGLNPDKVNVHGGAVALGHPLGCSG 367
+ A + QV Y +N A AN+K ++ + +V V GH LG +G
Sbjct: 307 LEEAEISPEQV-AY-VNAA-GTSTPANEKGESGAIVAVLGKEVPVSSTKSFTGHLLGAAG 363
Query: 368 ARILVTLLGVLRQ 380
A + + +R
Sbjct: 364 AVEAIVTIEAMRH 376
>pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|D Chain D, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|C Chain C, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|B Chain B, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
Length = 428
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 91 VCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMES 128
VC ++N C+S AI A +SI+ G DV++ GG E+
Sbjct: 175 VCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEA 212
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 17/135 (12%)
Query: 258 NASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPA-----LAIPKA 312
N + +G+ LVL S E K G ++A++ GY + A M + P AI A
Sbjct: 246 NGFVMGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLA 305
Query: 313 ISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVAL-------GHPLGC 365
+ A + QV Y +N A AN+K G + V V G AV + GH LG
Sbjct: 306 LEEAEISPEQV-AY-VN-AHGTSTPANEK--GESGAIVAVLGKAVPVSSTKSFTGHLLGA 360
Query: 366 SGARILVTLLGVLRQ 380
+GA + + +R
Sbjct: 361 AGAVEAIVTIEAMRH 375
>pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently
Linked Dodecanoic Acid
Length = 427
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 62/136 (45%), Gaps = 19/136 (13%)
Query: 244 RPSFKENGGTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTT 303
RP KE G V + DGA LVL E K G ++ A++ G+ ++ A M T+
Sbjct: 235 RPWDKERDGFV-------LGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHM-TS 286
Query: 304 AP------ALAIPKAISNAGLEASQVDCYEINEAFA-----VVALANQKLLGLNPDKVNV 352
P ALA+ A+ +AG+EASQ+ + A A + + G +V V
Sbjct: 287 PPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLV 346
Query: 353 HGGAVALGHPLGCSGA 368
A GH LG +GA
Sbjct: 347 SSTASMTGHLLGAAGA 362
>pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas
pdb|1W0I|B Chain B, Arabidopsis Thaliana Mitochondrial Kas
pdb|2IX4|A Chain A, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
pdb|2IX4|B Chain B, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
Length = 431
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 87 PNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNA 132
PN T CA+G +I A++ IQ G DV+VAGG ES +A
Sbjct: 171 PNHAAVT----ACATGAHSIGDATRMIQFGDADVMVAGGTESSIDA 212
>pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii)
Length = 427
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 19/136 (13%)
Query: 244 RPSFKENGGTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTT 303
RP KE G V + DGA LVL E K G ++ A++ G+ ++ A M T+
Sbjct: 235 RPWDKERDGFV-------LGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHM-TS 286
Query: 304 AP------ALAIPKAISNAGLEASQVDCYEINEAFA-----VVALANQKLLGLNPDKVNV 352
P ALA+ A+ +AG+EASQ+ + A A + + G +V V
Sbjct: 287 PPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLV 346
Query: 353 HGGAVALGHPLGCSGA 368
GH LG +GA
Sbjct: 347 SSTKSMTGHLLGAAGA 362
>pdb|3HNZ|A Chain A, Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin
pdb|3HO2|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
pdb|3HO9|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
A1
pdb|3I8P|A Chain A, Crystal Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin A1
Length = 427
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 19/136 (13%)
Query: 244 RPSFKENGGTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTT 303
RP KE G V + DGA LVL E K G ++ A++ G+ ++ A M T+
Sbjct: 235 RPWDKERDGFV-------LGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHM-TS 286
Query: 304 AP------ALAIPKAISNAGLEASQVDCYEINEAFA-----VVALANQKLLGLNPDKVNV 352
P ALA+ A+ +AG+EASQ+ + A A + + G +V V
Sbjct: 287 PPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLV 346
Query: 353 HGGAVALGHPLGCSGA 368
GH LG +GA
Sbjct: 347 SSTKSMTGHLLGAAGA 362
>pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target,
Implications From The Crystal Structure Of A Complex
With The Inhibitor Cerulenin.
pdb|1KAS|A Chain A, Beta-Ketoacyl-Acp Synthase Ii From Escherichia Coli
Length = 412
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 19/136 (13%)
Query: 244 RPSFKENGGTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTT 303
RP KE G V + DGA LVL E K G ++ A++ G+ ++ A M T+
Sbjct: 220 RPWDKERDGFV-------LGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHM-TS 271
Query: 304 AP------ALAIPKAISNAGLEASQVDCYEINEAFA-----VVALANQKLLGLNPDKVNV 352
P ALA+ A+ +AG+EASQ+ + A A + + G +V V
Sbjct: 272 PPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLV 331
Query: 353 HGGAVALGHPLGCSGA 368
GH LG +GA
Sbjct: 332 SSTKSMTGHLLGAAGA 347
>pdb|2GFV|A Chain A, Structure Of E. Coli Fabf (Kasii) C163q Mutant
pdb|2GFX|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Platensimycin
pdb|3G0Y|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydroplatensimycin
pdb|3G11|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydrophenyl Platensimycin
Length = 427
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 19/136 (13%)
Query: 244 RPSFKENGGTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTT 303
RP KE G V + DGA LVL E K G ++ A++ G+ ++ A M T+
Sbjct: 235 RPWDKERDGFV-------LGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHM-TS 286
Query: 304 AP------ALAIPKAISNAGLEASQVDCYEINEAFA-----VVALANQKLLGLNPDKVNV 352
P ALA+ A+ +AG+EASQ+ + A A + + G +V V
Sbjct: 287 PPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLV 346
Query: 353 HGGAVALGHPLGCSGA 368
GH LG +GA
Sbjct: 347 SSTKSMTGHLLGAAGA 362
>pdb|3KZU|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|C Chain C, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
Length = 428
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 87 PNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMES 128
PN V T CA+G AI A++ I G DV+VAGG ES
Sbjct: 170 PNHSVVT----ACATGTHAIGDAARLIAFGDADVMVAGGTES 207
>pdb|3E60|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
pdb|3E60|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
Length = 424
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 87 PNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSN 131
PN V T C++G AI A++ I LG DV++AGG ES N
Sbjct: 166 PNHSVVTA----CSTGAHAIGDAARLIALGDADVMLAGGTESPIN 206
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 13/111 (11%)
Query: 262 ISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISN--AGLE 319
+ +GAA +VL E K G ++ A+I GY + A + TAP+ + A + A L+
Sbjct: 243 MGEGAAIVVLEELEHAKKRGARIYAEIIGYGLSGDAYHI--TAPSESGEGAQRSMMAALK 300
Query: 320 ASQVDCYEINEAFA--------VVALAN-QKLLGLNPDKVNVHGGAVALGH 361
+QV+ E++ A V+ LA +++LG +V++ ++GH
Sbjct: 301 RAQVNVSELDYINAHGTSTMADVIELAAVERVLGYYAPQVSMSSTKSSIGH 351
>pdb|4EWG|A Chain A, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
pdb|4EWG|B Chain B, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
Length = 412
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 95 VNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMS 130
+ CASG +AI A ++I +G +++AGG E +S
Sbjct: 164 TSSACASGSQAIGYAYENIAMGKQTLMLAGGAEELS 199
>pdb|1TQY|A Chain A, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|C Chain C, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|E Chain E, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|G Chain G, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 424
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 19/93 (20%)
Query: 262 ISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEAS 321
+++GAA VL + L G ++ A+I+GYA A M GL+A
Sbjct: 237 LAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHM---------------TGLKA- 280
Query: 322 QVDCYEINEAFAVVALANQKLLGLNPDKVNVHG 354
D E+ E VAL + + D +N HG
Sbjct: 281 --DGREMAETIR-VALDESRTDATDIDYINAHG 310
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 94 TVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHD 148
TV+ C+SGL A+ LA +S++ + +AGG+ ++ ++P E R L D
Sbjct: 194 TVDTACSSGLTALHLAXESLRRDECGLALAGGV-TVXSSPGAFTEFRSQGGLAAD 247
>pdb|1H4F|A Chain A, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|B Chain B, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|C Chain C, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|D Chain D, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
Length = 406
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 91 VCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESM 129
V +++ CA+ I A + IQLG D++ AGG E +
Sbjct: 155 VNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEEL 193
>pdb|1FJ4|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ8|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1G5X|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|2BUH|A Chain A, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|B Chain B, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|C Chain C, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|D Chain D, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUI|A Chain A, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|B Chain B, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|C Chain C, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|D Chain D, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2AQ7|A Chain A, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|B Chain B, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|C Chain C, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|D Chain D, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQB|A Chain A, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|B Chain B, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|C Chain C, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|D Chain D, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2VB7|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB8|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB9|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VBA|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
Length = 406
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 91 VCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESM 129
V +++ CA+ I A + IQLG D++ AGG E +
Sbjct: 155 VNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEEL 193
>pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
pdb|2GP6|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
Length = 434
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 99 CASGLKAIMLASQSIQLGINDVIVAGGMES 128
CASG +AI A Q I LG D + GG+E+
Sbjct: 187 CASGAEAIARAWQQIVLGEADAAICGGVET 216
>pdb|1DD8|A Chain A, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|B Chain B, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|C Chain C, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|D Chain D, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|2CDH|A Chain A, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|B Chain B, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|C Chain C, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|D Chain D, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|E Chain E, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|F Chain F, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 406
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 91 VCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESM 129
V +++ CA+ I A + IQLG D++ AGG E +
Sbjct: 155 VNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEEL 193
>pdb|2BYW|A Chain A, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|B Chain B, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|C Chain C, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|D Chain D, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYX|A Chain A, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|B Chain B, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|C Chain C, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|D Chain D, Kas I Lys328ala Mutant In Complex With Fatty Acid
Length = 418
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 91 VCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESM 129
V +++ CA+ I A + IQLG D++ AGG E +
Sbjct: 167 VNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEEL 205
>pdb|2BYY|A Chain A, E. Coli Kas I H298e Mutation
pdb|2BYY|B Chain B, E. Coli Kas I H298e Mutation
pdb|2BYY|C Chain C, E. Coli Kas I H298e Mutation
pdb|2BYY|D Chain D, E. Coli Kas I H298e Mutation
pdb|2BZ3|A Chain A, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|B Chain B, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|C Chain C, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|D Chain D, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
Length = 418
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 91 VCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESM 129
V +++ CA+ I A + IQLG D++ AGG E +
Sbjct: 167 VNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEEL 205
>pdb|2BYZ|A Chain A, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|B Chain B, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|C Chain C, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|D Chain D, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BZ4|A Chain A, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|B Chain B, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|C Chain C, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|D Chain D, Structure Of E. Coli Kas I H298q Mutant
Length = 418
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 91 VCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESM 129
V +++ CA+ I A + IQLG D++ AGG E +
Sbjct: 167 VNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEEL 205
>pdb|3OYT|A Chain A, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
pdb|3OYT|B Chain B, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
Length = 410
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 91 VCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESM 129
V +++ CA+ I A + IQLG D++ AGG E +
Sbjct: 159 VNYSISSACATSAHCIGHALELIQLGKQDIVFAGGGEEL 197
>pdb|4DDO|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis
Length = 451
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 235 FDPAKLRKLRPSFKENGGTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADA 294
F +R RP ++ G V + +GAA +V+ S + L G + IA+I GY
Sbjct: 242 FSEEPVRASRPFDRDRDGFV-------MGEGAAMVVVESLDHALARGARPIAEIIGYGTT 294
Query: 295 AQAPEM 300
A A M
Sbjct: 295 ADAYHM 300
>pdb|4F32|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
pdb|4F32|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
Length = 451
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 235 FDPAKLRKLRPSFKENGGTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADA 294
F +R RP ++ G V + +GAA +V+ S + L G + IA+I GY
Sbjct: 242 FSEEPVRASRPFDRDRDGFV-------MGEGAAMVVVESLDHALARGARPIAEIIGYGTT 294
Query: 295 AQAPEM 300
A A M
Sbjct: 295 ADAYHM 300
>pdb|2GQD|A Chain A, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
pdb|2GQD|B Chain B, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
Length = 437
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 20/121 (16%)
Query: 262 ISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAP-----ALAIPKAISNA 316
+ +GA LV+ S E G + A+I GY A + AP + A+ A+ +A
Sbjct: 255 MGEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDA 314
Query: 317 GLEASQVDCY----------EINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCS 366
G+E V ++NE A+ + G + V GH LG +
Sbjct: 315 GIEPKDVQYLNAHGTSTPVGDLNEVKAI-----KNTFGEAAKHLKVSSTKSMTGHLLGAT 369
Query: 367 G 367
G
Sbjct: 370 G 370
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 82 LGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMES 128
LGA PN T CA+G +I A + +Q G D ++ GG E+
Sbjct: 175 LGAKGPNGATVT----ACATGTNSIGEAFKIVQRGDADAMITGGTEA 217
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,682,130
Number of Sequences: 62578
Number of extensions: 425226
Number of successful extensions: 1324
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1137
Number of HSP's gapped (non-prelim): 102
length of query: 405
length of database: 14,973,337
effective HSP length: 101
effective length of query: 304
effective length of database: 8,652,959
effective search space: 2630499536
effective search space used: 2630499536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)