Query 015496
Match_columns 405
No_of_seqs 272 out of 1211
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 06:51:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015496.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015496hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2160 Armadillo/beta-catenin 100.0 2.2E-41 4.8E-46 331.3 26.1 312 75-396 10-342 (342)
2 COG5064 SRP1 Karyopherin (impo 100.0 2.9E-33 6.3E-38 270.8 14.7 252 146-404 84-351 (526)
3 KOG0166 Karyopherin (importin) 100.0 2.1E-31 4.5E-36 273.4 24.5 250 146-403 79-345 (514)
4 KOG0166 Karyopherin (importin) 99.9 4.8E-25 1E-29 226.7 19.4 261 133-403 111-387 (514)
5 COG5064 SRP1 Karyopherin (impo 99.9 1.8E-25 3.8E-30 216.9 12.9 243 151-403 133-392 (526)
6 PLN03200 cellulose synthase-in 99.8 3.6E-19 7.7E-24 206.1 26.2 251 136-403 367-632 (2102)
7 PLN03200 cellulose synthase-in 99.8 5.5E-19 1.2E-23 204.6 27.2 245 146-392 417-707 (2102)
8 PF08609 Fes1: Nucleotide exch 99.8 1.3E-18 2.8E-23 142.3 6.9 89 77-170 3-92 (92)
9 KOG4224 Armadillo repeat prote 99.7 1.2E-15 2.6E-20 149.9 17.1 226 148-383 182-421 (550)
10 KOG4224 Armadillo repeat prote 99.6 6.1E-15 1.3E-19 145.0 10.3 203 147-360 99-303 (550)
11 cd00020 ARM Armadillo/beta-cat 99.6 5.3E-14 1.2E-18 117.4 14.6 118 169-288 2-119 (120)
12 cd00020 ARM Armadillo/beta-cat 99.4 3.7E-12 8.1E-17 106.2 13.3 118 211-335 2-119 (120)
13 KOG2160 Armadillo/beta-catenin 99.3 1.2E-09 2.6E-14 108.2 22.7 188 155-352 66-255 (342)
14 PF05804 KAP: Kinesin-associat 99.3 2.8E-10 6.1E-15 123.2 19.7 194 152-358 268-462 (708)
15 PF10508 Proteasom_PSMB: Prote 99.2 2.2E-09 4.8E-14 113.3 23.2 210 136-359 43-252 (503)
16 PF04826 Arm_2: Armadillo-like 99.2 6.4E-10 1.4E-14 107.4 17.0 175 171-358 9-184 (254)
17 KOG4199 Uncharacterized conser 99.0 7.3E-08 1.6E-12 94.8 21.5 230 126-362 138-385 (461)
18 PF04826 Arm_2: Armadillo-like 99.0 4.6E-08 1E-12 94.5 19.9 193 130-337 11-206 (254)
19 PF05804 KAP: Kinesin-associat 99.0 6.2E-08 1.3E-12 105.3 22.9 202 146-359 303-542 (708)
20 KOG4199 Uncharacterized conser 99.0 8E-08 1.7E-12 94.5 20.9 212 139-359 197-425 (461)
21 PF10508 Proteasom_PSMB: Prote 99.0 1.1E-07 2.4E-12 100.4 22.5 194 115-319 60-255 (503)
22 PF03224 V-ATPase_H_N: V-ATPas 98.9 7.7E-08 1.7E-12 95.5 17.6 206 146-360 70-293 (312)
23 KOG0168 Putative ubiquitin fus 98.9 8.4E-08 1.8E-12 103.1 18.4 208 127-346 163-374 (1051)
24 KOG1293 Proteins containing ar 98.8 6.2E-08 1.3E-12 101.9 14.1 177 164-346 367-543 (678)
25 KOG1048 Neural adherens juncti 98.7 2E-07 4.3E-12 100.1 13.5 174 176-357 235-424 (717)
26 cd00256 VATPase_H VATPase_H, r 98.5 5.9E-05 1.3E-09 78.0 24.7 221 130-359 52-286 (429)
27 PRK09687 putative lyase; Provi 98.3 3E-05 6.4E-10 76.2 17.6 150 146-332 67-217 (280)
28 PF00514 Arm: Armadillo/beta-c 98.3 1.2E-06 2.6E-11 60.6 5.6 41 205-245 1-41 (41)
29 KOG0946 ER-Golgi vesicle-tethe 98.3 4.9E-05 1.1E-09 81.9 20.0 223 131-359 61-324 (970)
30 PRK09687 putative lyase; Provi 98.3 2.1E-05 4.6E-10 77.2 16.2 161 133-334 25-186 (280)
31 KOG4500 Rho/Rac GTPase guanine 98.3 8.8E-06 1.9E-10 82.6 12.4 190 172-367 85-282 (604)
32 KOG1048 Neural adherens juncti 98.2 1.9E-05 4.2E-10 85.1 13.4 116 217-337 234-350 (717)
33 PF13513 HEAT_EZ: HEAT-like re 98.1 5.5E-06 1.2E-10 60.8 5.1 55 188-243 1-55 (55)
34 PRK13800 putative oxidoreducta 98.1 0.00035 7.7E-09 79.0 22.0 27 308-334 839-865 (897)
35 PF13646 HEAT_2: HEAT repeats; 98.1 1.4E-05 3E-10 63.5 7.2 87 176-285 1-88 (88)
36 PF12348 CLASP_N: CLASP N term 98.1 4.2E-05 9.1E-10 71.9 11.6 184 141-337 15-207 (228)
37 KOG2122 Beta-catenin-binding p 98.1 0.00023 5E-09 80.8 18.8 246 149-401 210-551 (2195)
38 PF00514 Arm: Armadillo/beta-c 98.0 5E-06 1.1E-10 57.5 3.5 38 165-202 3-40 (41)
39 PF05536 Neurochondrin: Neuroc 98.0 0.00074 1.6E-08 72.2 20.9 197 129-338 3-215 (543)
40 KOG2171 Karyopherin (importin) 98.0 0.00023 5E-09 79.5 17.3 155 176-337 346-505 (1075)
41 PF08045 CDC14: Cell division 98.0 0.00012 2.5E-09 70.8 13.2 103 187-289 104-207 (257)
42 KOG0168 Putative ubiquitin fus 98.0 0.00082 1.8E-08 73.2 20.4 212 141-362 220-438 (1051)
43 KOG2122 Beta-catenin-binding p 98.0 0.00015 3.4E-09 82.2 15.4 201 152-355 370-577 (2195)
44 KOG4500 Rho/Rac GTPase guanine 97.9 0.00035 7.5E-09 71.3 16.0 231 148-396 239-482 (604)
45 KOG0946 ER-Golgi vesicle-tethe 97.9 0.00077 1.7E-08 73.0 18.3 221 127-359 18-263 (970)
46 PF03224 V-ATPase_H_N: V-ATPas 97.8 0.00051 1.1E-08 68.3 15.5 185 134-327 108-305 (312)
47 PRK13800 putative oxidoreducta 97.8 0.00075 1.6E-08 76.3 18.5 98 134-243 624-741 (897)
48 PF09759 Atx10homo_assoc: Spin 97.8 0.0001 2.3E-09 61.5 8.3 67 190-256 2-70 (102)
49 KOG3678 SARM protein (with ste 97.8 0.00043 9.4E-09 71.2 13.9 179 171-360 177-358 (832)
50 PF01602 Adaptin_N: Adaptin N 97.8 0.0017 3.7E-08 68.2 19.1 171 146-340 55-225 (526)
51 PF01602 Adaptin_N: Adaptin N 97.7 0.0013 2.9E-08 69.0 17.4 188 128-337 72-261 (526)
52 KOG1517 Guanine nucleotide bin 97.7 0.0024 5.1E-08 71.1 18.1 183 150-338 487-673 (1387)
53 KOG2759 Vacuolar H+-ATPase V1 97.6 0.0076 1.7E-07 61.5 19.3 176 174-360 114-300 (442)
54 smart00185 ARM Armadillo/beta- 97.5 0.00016 3.5E-09 49.0 4.7 39 165-203 3-41 (41)
55 KOG1293 Proteins containing ar 97.5 0.00072 1.6E-08 71.9 11.6 140 146-289 390-533 (678)
56 smart00185 ARM Armadillo/beta- 97.4 0.00043 9.2E-09 46.9 5.4 39 206-244 2-40 (41)
57 PF11698 V-ATPase_H_C: V-ATPas 97.4 0.00025 5.3E-09 60.8 5.1 86 118-205 31-117 (119)
58 PF14664 RICTOR_N: Rapamycin-i 97.4 0.0078 1.7E-07 61.5 16.8 184 145-338 80-271 (371)
59 PTZ00429 beta-adaptin; Provisi 97.3 0.058 1.3E-06 59.9 23.8 164 146-337 45-209 (746)
60 KOG4646 Uncharacterized conser 97.3 0.0042 9E-08 54.6 11.3 110 146-256 30-139 (173)
61 KOG2023 Nuclear transport rece 97.3 0.016 3.4E-07 62.2 17.6 150 130-290 127-286 (885)
62 PF13646 HEAT_2: HEAT repeats; 97.3 0.00088 1.9E-08 53.0 6.6 86 218-332 1-88 (88)
63 PTZ00429 beta-adaptin; Provisi 97.3 0.034 7.3E-07 61.7 20.9 159 112-289 48-208 (746)
64 COG5369 Uncharacterized conser 97.2 0.0014 3.1E-08 68.4 9.2 138 193-337 408-546 (743)
65 KOG1222 Kinesin associated pro 97.1 0.086 1.9E-06 55.0 20.9 188 163-360 334-600 (791)
66 cd00256 VATPase_H VATPase_H, r 97.1 0.024 5.2E-07 58.9 17.0 175 175-358 54-236 (429)
67 PF05536 Neurochondrin: Neuroc 97.1 0.017 3.6E-07 62.0 16.2 153 175-338 6-170 (543)
68 KOG2171 Karyopherin (importin) 97.1 0.13 2.9E-06 58.2 23.3 172 146-328 361-538 (1075)
69 KOG2759 Vacuolar H+-ATPase V1 97.0 0.025 5.5E-07 57.8 16.0 201 129-336 153-438 (442)
70 KOG4646 Uncharacterized conser 97.0 0.0074 1.6E-07 53.1 10.6 127 175-310 17-144 (173)
71 KOG1517 Guanine nucleotide bin 96.9 0.01 2.2E-07 66.3 12.4 181 163-345 543-741 (1387)
72 TIGR02270 conserved hypothetic 96.8 0.017 3.6E-07 59.9 13.1 118 176-334 88-205 (410)
73 COG5369 Uncharacterized conser 96.8 0.007 1.5E-07 63.5 9.9 170 172-346 429-604 (743)
74 PF09759 Atx10homo_assoc: Spin 96.8 0.0042 9.2E-08 51.9 6.8 58 233-290 3-60 (102)
75 COG5096 Vesicle coat complex, 96.8 0.038 8.2E-07 60.9 15.8 138 176-335 57-194 (757)
76 PF13513 HEAT_EZ: HEAT-like re 96.8 0.0026 5.6E-08 46.4 4.8 54 231-287 2-55 (55)
77 PF06371 Drf_GBD: Diaphanous G 96.7 0.044 9.6E-07 49.7 13.2 112 217-335 67-186 (187)
78 KOG1789 Endocytosis protein RM 96.6 0.078 1.7E-06 59.7 16.3 137 148-291 1740-1885(2235)
79 KOG3678 SARM protein (with ste 96.5 0.043 9.3E-07 56.9 13.2 154 134-291 183-338 (832)
80 PF11841 DUF3361: Domain of un 96.5 0.046 1E-06 49.3 11.8 122 166-290 3-132 (160)
81 KOG1241 Karyopherin (importin) 96.5 0.19 4.1E-06 54.9 18.2 156 182-340 372-534 (859)
82 PF11698 V-ATPase_H_C: V-ATPas 96.5 0.0069 1.5E-07 52.0 5.9 73 175-247 44-117 (119)
83 TIGR02270 conserved hypothetic 96.4 0.43 9.3E-06 49.5 19.7 89 131-243 117-205 (410)
84 KOG0213 Splicing factor 3b, su 96.4 0.12 2.7E-06 56.2 15.8 144 179-336 804-954 (1172)
85 PF10165 Ric8: Guanine nucleot 96.3 0.14 3.1E-06 53.6 16.0 135 153-290 1-169 (446)
86 PF05004 IFRD: Interferon-rela 96.2 0.36 7.8E-06 48.2 17.8 195 133-338 45-259 (309)
87 PF11841 DUF3361: Domain of un 96.1 0.1 2.2E-06 47.1 11.8 131 209-345 4-141 (160)
88 PF05918 API5: Apoptosis inhib 96.1 0.042 9.1E-07 58.7 10.9 83 177-270 26-108 (556)
89 KOG4413 26S proteasome regulat 96.1 0.094 2E-06 52.4 12.3 152 176-336 84-243 (524)
90 KOG2023 Nuclear transport rece 96.0 0.13 2.8E-06 55.5 14.0 158 175-346 129-294 (885)
91 COG5096 Vesicle coat complex, 96.0 0.26 5.6E-06 54.5 16.7 160 112-289 35-195 (757)
92 KOG1222 Kinesin associated pro 95.9 0.49 1.1E-05 49.6 17.0 195 112-318 233-436 (791)
93 COG1413 FOG: HEAT repeat [Ener 95.8 0.11 2.4E-06 51.6 12.2 32 306-337 179-210 (335)
94 KOG1062 Vesicle coat complex A 95.8 0.22 4.7E-06 54.7 14.6 199 113-339 51-266 (866)
95 PF02985 HEAT: HEAT repeat; I 95.8 0.015 3.3E-07 37.6 3.7 29 176-204 2-30 (31)
96 COG5181 HSH155 U2 snRNP splice 95.7 0.17 3.7E-06 54.3 13.1 146 176-336 606-759 (975)
97 PF14664 RICTOR_N: Rapamycin-i 95.7 0.65 1.4E-05 47.6 17.1 177 147-336 39-226 (371)
98 KOG1061 Vesicle coat complex A 95.6 0.12 2.6E-06 56.3 11.7 143 174-338 49-191 (734)
99 PF12755 Vac14_Fab1_bd: Vacuol 95.5 0.066 1.4E-06 44.3 7.5 66 175-244 28-95 (97)
100 PF12460 MMS19_C: RNAPII trans 95.4 0.56 1.2E-05 48.5 15.7 110 176-290 273-395 (415)
101 PF14668 RICTOR_V: Rapamycin-i 95.4 0.078 1.7E-06 41.6 7.1 65 191-257 4-69 (73)
102 PF12348 CLASP_N: CLASP N term 95.3 0.27 5.9E-06 45.9 12.2 132 151-289 71-206 (228)
103 KOG1241 Karyopherin (importin) 95.2 0.34 7.3E-06 53.1 13.6 153 174-337 319-478 (859)
104 KOG1242 Protein containing ada 95.2 0.67 1.5E-05 49.6 15.7 173 148-337 269-445 (569)
105 KOG0212 Uncharacterized conser 95.2 1.3 2.8E-05 47.3 17.4 105 175-289 337-444 (675)
106 KOG1824 TATA-binding protein-i 95.1 0.58 1.3E-05 52.4 15.1 176 131-337 817-996 (1233)
107 COG1413 FOG: HEAT repeat [Ener 95.0 1.2 2.7E-05 44.0 16.4 124 175-336 106-242 (335)
108 PF02985 HEAT: HEAT repeat; I 95.0 0.047 1E-06 35.2 4.0 29 218-246 2-30 (31)
109 KOG1824 TATA-binding protein-i 94.9 1.3 2.7E-05 49.9 16.9 153 188-359 147-304 (1233)
110 PF08045 CDC14: Cell division 94.7 0.35 7.5E-06 47.0 11.0 100 149-248 107-210 (257)
111 PF06371 Drf_GBD: Diaphanous G 94.7 0.16 3.4E-06 46.0 8.4 92 152-244 83-186 (187)
112 KOG2973 Uncharacterized conser 94.7 0.99 2.1E-05 44.9 14.1 188 136-339 8-207 (353)
113 KOG1062 Vesicle coat complex A 94.6 4.6 0.0001 44.8 20.1 182 148-336 309-544 (866)
114 KOG1059 Vesicle coat complex A 94.6 0.77 1.7E-05 50.2 14.0 33 175-207 182-214 (877)
115 PF12717 Cnd1: non-SMC mitotic 94.5 1.4 3E-05 40.1 14.1 90 187-289 1-92 (178)
116 PF12460 MMS19_C: RNAPII trans 94.5 4.5 9.7E-05 41.9 19.5 192 127-338 185-396 (415)
117 PF12717 Cnd1: non-SMC mitotic 94.2 0.44 9.6E-06 43.4 10.2 91 230-337 2-93 (178)
118 PF08569 Mo25: Mo25-like; Int 94.2 4.8 0.00011 40.7 18.4 149 187-341 136-288 (335)
119 PF06025 DUF913: Domain of Unk 94.1 1.6 3.4E-05 44.9 15.0 83 187-270 122-208 (379)
120 PF04078 Rcd1: Cell differenti 94.0 2.1 4.6E-05 41.6 14.7 196 146-346 8-227 (262)
121 KOG3036 Protein involved in ce 94.0 4.5 9.8E-05 39.2 16.5 202 77-289 23-247 (293)
122 PF12031 DUF3518: Domain of un 93.9 0.21 4.5E-06 48.0 7.4 54 176-229 174-229 (257)
123 KOG2734 Uncharacterized conser 93.6 11 0.00023 39.5 19.9 179 151-336 200-400 (536)
124 KOG4413 26S proteasome regulat 93.6 5.6 0.00012 40.2 16.9 198 130-335 77-285 (524)
125 PF12719 Cnd3: Nuclear condens 93.4 4.2 9.1E-05 40.0 16.2 167 174-359 26-206 (298)
126 PF10165 Ric8: Guanine nucleot 93.4 0.6 1.3E-05 49.0 10.6 142 243-392 8-171 (446)
127 PF13251 DUF4042: Domain of un 93.4 1.2 2.5E-05 41.2 11.2 145 189-338 1-176 (182)
128 PF12755 Vac14_Fab1_bd: Vacuol 93.2 1 2.2E-05 37.2 9.6 93 191-288 3-95 (97)
129 KOG1991 Nuclear transport rece 93.2 11 0.00023 43.0 19.9 121 132-255 411-542 (1010)
130 PF04078 Rcd1: Cell differenti 92.9 0.95 2.1E-05 44.0 10.3 168 129-304 40-227 (262)
131 KOG0213 Splicing factor 3b, su 92.2 0.64 1.4E-05 51.0 8.8 152 129-289 797-954 (1172)
132 KOG1789 Endocytosis protein RM 92.1 1.7 3.6E-05 49.6 12.0 140 188-337 1739-1884(2235)
133 KOG2025 Chromosome condensatio 92.0 4.2 9.2E-05 44.6 14.6 125 152-284 64-188 (892)
134 COG5231 VMA13 Vacuolar H+-ATPa 91.8 2.5 5.5E-05 42.4 11.8 167 163-336 223-428 (432)
135 KOG2973 Uncharacterized conser 91.6 1.5 3.3E-05 43.6 10.0 113 218-344 5-119 (353)
136 KOG4535 HEAT and armadillo rep 91.4 0.66 1.4E-05 48.7 7.6 153 184-338 401-561 (728)
137 KOG2956 CLIP-associating prote 91.3 17 0.00037 38.3 17.6 187 130-336 285-477 (516)
138 KOG2734 Uncharacterized conser 91.1 22 0.00048 37.3 18.3 197 150-352 101-321 (536)
139 PF05918 API5: Apoptosis inhib 91.1 6.6 0.00014 42.3 15.0 100 176-288 61-161 (556)
140 KOG1242 Protein containing ada 91.1 5.3 0.00012 42.9 14.2 145 175-336 97-245 (569)
141 KOG1061 Vesicle coat complex A 90.9 5 0.00011 44.2 14.0 161 112-290 29-190 (734)
142 KOG1248 Uncharacterized conser 90.9 10 0.00022 43.8 16.8 209 111-335 672-897 (1176)
143 KOG0212 Uncharacterized conser 90.8 5.5 0.00012 42.7 13.7 140 147-290 264-407 (675)
144 KOG4535 HEAT and armadillo rep 90.8 0.71 1.5E-05 48.4 7.2 178 149-335 407-602 (728)
145 cd03567 VHS_GGA VHS domain fam 90.8 2.9 6.4E-05 36.8 10.2 70 175-244 39-115 (139)
146 COG5181 HSH155 U2 snRNP splice 90.8 1 2.2E-05 48.6 8.4 151 130-289 603-759 (975)
147 KOG1820 Microtubule-associated 90.7 6.2 0.00013 44.5 14.9 171 148-337 268-444 (815)
148 KOG2999 Regulator of Rac1, req 90.6 3.9 8.5E-05 43.7 12.4 159 127-290 79-243 (713)
149 cd03569 VHS_Hrs_Vps27p VHS dom 90.4 4 8.7E-05 36.0 10.8 72 175-246 42-115 (142)
150 PF11701 UNC45-central: Myosin 90.4 1.7 3.7E-05 38.9 8.5 99 182-283 51-153 (157)
151 cd03561 VHS VHS domain family; 90.3 4.9 0.00011 34.8 11.2 72 176-247 39-114 (133)
152 PF11701 UNC45-central: Myosin 90.2 1.2 2.5E-05 40.0 7.3 148 175-333 4-156 (157)
153 KOG1077 Vesicle coat complex A 90.1 4.5 9.7E-05 44.4 12.6 43 168-210 180-223 (938)
154 KOG1059 Vesicle coat complex A 89.9 33 0.00071 38.1 18.9 123 149-288 125-247 (877)
155 KOG0301 Phospholipase A2-activ 89.9 7.8 0.00017 42.3 14.2 145 135-289 548-704 (745)
156 smart00638 LPD_N Lipoprotein N 89.9 12 0.00025 40.3 16.1 168 133-332 359-541 (574)
157 KOG0414 Chromosome condensatio 89.9 2.9 6.3E-05 48.1 11.5 142 174-337 918-1065(1251)
158 smart00288 VHS Domain present 89.6 5.6 0.00012 34.6 10.9 71 176-246 39-112 (133)
159 PF08167 RIX1: rRNA processing 89.4 4.4 9.6E-05 36.5 10.5 115 216-337 25-144 (165)
160 KOG1967 DNA repair/transcripti 89.3 1.7 3.8E-05 48.7 9.0 120 206-336 858-982 (1030)
161 PF06025 DUF913: Domain of Unk 89.1 16 0.00036 37.5 15.7 121 194-320 80-209 (379)
162 KOG2032 Uncharacterized conser 89.1 7.1 0.00015 41.2 12.8 118 169-290 249-372 (533)
163 KOG0567 HEAT repeat-containing 89.0 24 0.00053 34.6 17.1 162 175-352 68-263 (289)
164 PF00790 VHS: VHS domain; Int 88.9 3 6.6E-05 36.4 8.9 69 175-243 43-116 (140)
165 smart00638 LPD_N Lipoprotein N 88.9 14 0.0003 39.8 15.7 119 175-327 443-569 (574)
166 KOG1788 Uncharacterized conser 88.8 0.74 1.6E-05 52.2 5.7 127 238-377 664-804 (2799)
167 cd03568 VHS_STAM VHS domain fa 88.7 4.3 9.3E-05 36.0 9.7 73 175-247 38-112 (144)
168 KOG1020 Sister chromatid cohes 88.7 20 0.00043 42.7 17.1 145 128-290 763-922 (1692)
169 PF08569 Mo25: Mo25-like; Int 88.5 7.7 0.00017 39.2 12.5 173 148-324 138-320 (335)
170 PF01347 Vitellogenin_N: Lipop 88.4 4.1 8.8E-05 44.1 11.3 165 137-332 401-585 (618)
171 KOG1943 Beta-tubulin folding c 88.3 8.1 0.00018 44.2 13.4 185 185-385 555-749 (1133)
172 KOG2259 Uncharacterized conser 88.2 0.7 1.5E-05 50.1 5.0 75 167-246 366-440 (823)
173 PF01347 Vitellogenin_N: Lipop 88.2 3.4 7.3E-05 44.7 10.5 120 175-328 487-614 (618)
174 KOG2999 Regulator of Rac1, req 87.7 8.9 0.00019 41.1 12.5 153 178-337 87-243 (713)
175 PF12719 Cnd3: Nuclear condens 87.4 6.4 0.00014 38.8 11.1 112 216-338 26-145 (298)
176 PF10363 DUF2435: Protein of u 87.2 2.9 6.2E-05 34.2 7.1 72 176-249 5-76 (92)
177 KOG4653 Uncharacterized conser 86.8 16 0.00034 41.1 14.3 189 130-337 726-919 (982)
178 PF04063 DUF383: Domain of unk 86.8 2.3 5E-05 39.5 7.1 148 231-392 10-181 (192)
179 COG5209 RCD1 Uncharacterized p 86.7 31 0.00068 33.2 14.7 98 151-248 118-221 (315)
180 KOG2259 Uncharacterized conser 86.6 1.3 2.9E-05 48.0 6.0 104 211-332 368-471 (823)
181 KOG1248 Uncharacterized conser 86.5 72 0.0016 37.3 21.8 169 110-288 587-766 (1176)
182 PF01365 RYDR_ITPR: RIH domain 86.5 2.3 5E-05 39.6 7.0 96 188-290 75-170 (207)
183 PF11707 Npa1: Ribosome 60S bi 86.1 40 0.00086 33.8 17.6 210 176-392 58-312 (330)
184 KOG1060 Vesicle coat complex A 86.1 17 0.00038 40.5 14.0 159 148-335 50-208 (968)
185 COG5231 VMA13 Vacuolar H+-ATPa 86.0 1.2 2.6E-05 44.6 4.9 81 165-245 345-428 (432)
186 PF11865 DUF3385: Domain of un 85.9 8.3 0.00018 34.7 10.1 143 176-335 12-156 (160)
187 cd03567 VHS_GGA VHS domain fam 85.8 10 0.00022 33.4 10.3 90 235-335 20-115 (139)
188 COG5215 KAP95 Karyopherin (imp 85.3 28 0.00061 37.8 14.7 110 175-290 322-438 (858)
189 cd03561 VHS VHS domain family; 84.9 7.8 0.00017 33.6 9.1 91 235-336 19-112 (133)
190 COG5209 RCD1 Uncharacterized p 84.7 26 0.00057 33.7 12.9 179 150-337 62-269 (315)
191 PF14668 RICTOR_V: Rapamycin-i 84.2 3.3 7.2E-05 32.5 5.8 68 233-308 4-71 (73)
192 COG5215 KAP95 Karyopherin (imp 83.7 43 0.00092 36.4 15.2 156 182-341 374-534 (858)
193 KOG2062 26S proteasome regulat 83.3 19 0.00042 39.9 12.8 157 172-367 516-675 (929)
194 KOG1058 Vesicle coat complex C 83.1 48 0.001 37.1 15.7 158 116-286 24-198 (948)
195 KOG3036 Protein involved in ce 82.8 50 0.0011 32.3 18.0 190 148-346 39-256 (293)
196 KOG4151 Myosin assembly protei 82.2 15 0.00032 40.8 11.6 161 192-361 560-723 (748)
197 COG5098 Chromosome condensatio 82.0 30 0.00065 38.4 13.5 143 173-338 890-1039(1128)
198 PF13764 E3_UbLigase_R4: E3 ub 81.7 36 0.00078 38.5 14.7 123 167-290 110-259 (802)
199 PF08167 RIX1: rRNA processing 81.7 21 0.00045 32.1 10.9 108 176-289 27-143 (165)
200 PF13764 E3_UbLigase_R4: E3 ub 81.5 77 0.0017 35.9 17.2 225 128-359 117-385 (802)
201 KOG1240 Protein kinase contain 81.5 27 0.00059 40.8 13.6 69 259-336 657-725 (1431)
202 KOG2274 Predicted importin 9 [ 81.0 24 0.00051 40.0 12.7 126 135-261 575-705 (1005)
203 COG5116 RPN2 26S proteasome re 80.9 17 0.00037 39.3 11.1 149 181-367 523-672 (926)
204 PF12830 Nipped-B_C: Sister ch 80.5 6.1 0.00013 36.3 7.1 69 176-252 10-81 (187)
205 cd03569 VHS_Hrs_Vps27p VHS dom 80.5 13 0.00029 32.7 9.0 90 235-335 23-113 (142)
206 PF05004 IFRD: Interferon-rela 80.2 67 0.0014 32.0 15.5 150 131-288 86-256 (309)
207 PF10363 DUF2435: Protein of u 80.0 6.5 0.00014 32.1 6.3 86 131-227 3-88 (92)
208 KOG1058 Vesicle coat complex C 80.0 31 0.00066 38.5 12.9 103 175-290 244-347 (948)
209 KOG1991 Nuclear transport rece 79.4 28 0.00061 39.7 12.8 129 216-359 410-553 (1010)
210 KOG2676 Uncharacterized conser 79.1 2 4.2E-05 43.6 3.5 64 193-256 375-440 (478)
211 PF14726 RTTN_N: Rotatin, an a 79.0 16 0.00035 30.3 8.4 92 189-283 2-94 (98)
212 PF04063 DUF383: Domain of unk 78.0 24 0.00051 32.9 10.2 103 184-290 5-133 (192)
213 PF04869 Uso1_p115_head: Uso1 77.8 80 0.0017 31.6 15.9 146 186-336 50-231 (312)
214 KOG3665 ZYG-1-like serine/thre 76.8 63 0.0014 36.1 14.7 97 239-340 494-591 (699)
215 PF08324 PUL: PUL domain; Int 76.5 13 0.00029 35.7 8.5 178 102-289 33-231 (268)
216 COG5240 SEC21 Vesicle coat com 76.4 32 0.00069 37.4 11.5 147 131-288 375-554 (898)
217 cd00197 VHS_ENTH_ANTH VHS, ENT 76.4 23 0.0005 29.5 8.9 90 235-335 19-114 (115)
218 KOG2611 Neurochondrin/leucine- 76.4 61 0.0013 34.6 13.4 131 218-356 13-158 (698)
219 KOG1967 DNA repair/transcripti 76.3 41 0.00088 38.3 12.8 208 114-329 798-1017(1030)
220 cd03568 VHS_STAM VHS domain fa 76.1 7.9 0.00017 34.3 6.2 90 236-336 20-110 (144)
221 KOG4151 Myosin assembly protei 75.9 21 0.00045 39.7 10.4 154 151-313 560-718 (748)
222 KOG4653 Uncharacterized conser 75.7 1.3E+02 0.0028 34.3 16.3 169 117-290 729-919 (982)
223 KOG1060 Vesicle coat complex A 75.5 18 0.00039 40.4 9.7 141 176-337 394-534 (968)
224 KOG0211 Protein phosphatase 2A 74.3 79 0.0017 35.6 14.6 171 109-288 172-344 (759)
225 KOG2933 Uncharacterized conser 74.2 38 0.00083 34.0 10.8 141 129-288 86-233 (334)
226 PF06012 DUF908: Domain of Unk 73.9 16 0.00034 36.7 8.5 63 189-252 237-304 (329)
227 KOG1240 Protein kinase contain 73.6 27 0.00058 40.8 10.7 109 177-289 425-537 (1431)
228 COG5218 YCG1 Chromosome conden 73.2 1.1E+02 0.0024 33.5 14.5 106 168-281 86-191 (885)
229 KOG1077 Vesicle coat complex A 73.2 52 0.0011 36.6 12.3 144 175-338 75-218 (938)
230 KOG1566 Conserved protein Mo25 72.8 1.1E+02 0.0023 31.0 13.5 147 188-340 139-290 (342)
231 KOG2137 Protein kinase [Signal 72.1 89 0.0019 34.7 13.9 135 171-320 386-521 (700)
232 PF14500 MMS19_N: Dos2-interac 72.0 51 0.0011 32.1 11.2 141 179-335 4-152 (262)
233 PF14225 MOR2-PAG1_C: Cell mor 71.3 1.1E+02 0.0023 30.0 13.3 140 170-337 107-255 (262)
234 PF08324 PUL: PUL domain; Int 71.2 98 0.0021 29.6 17.0 176 176-359 65-253 (268)
235 PF11791 Aconitase_B_N: Aconit 71.0 14 0.00031 33.1 6.4 104 130-247 21-125 (154)
236 KOG1243 Protein kinase [Genera 70.5 33 0.00072 37.8 10.3 168 146-335 267-436 (690)
237 KOG2611 Neurochondrin/leucine- 70.5 79 0.0017 33.8 12.5 132 179-318 16-163 (698)
238 KOG2137 Protein kinase [Signal 70.1 61 0.0013 35.9 12.2 170 146-335 286-457 (700)
239 smart00288 VHS Domain present 69.9 28 0.00061 30.2 8.1 73 217-289 38-111 (133)
240 KOG1832 HIV-1 Vpr-binding prot 69.8 8.8 0.00019 43.3 5.8 135 165-306 592-784 (1516)
241 PF00790 VHS: VHS domain; Int 69.7 19 0.00042 31.4 7.1 90 235-335 24-117 (140)
242 KOG1949 Uncharacterized conser 69.4 73 0.0016 35.5 12.4 192 179-402 179-379 (1005)
243 PF12530 DUF3730: Protein of u 69.4 1.1E+02 0.0023 29.2 13.7 140 176-336 2-151 (234)
244 PF11791 Aconitase_B_N: Aconit 69.0 18 0.00038 32.5 6.6 111 101-227 15-137 (154)
245 PF08506 Cse1: Cse1; InterPro 68.7 42 0.00092 34.4 10.3 143 176-331 212-370 (370)
246 KOG2062 26S proteasome regulat 68.2 27 0.00058 38.9 8.9 116 185-324 566-682 (929)
247 KOG1243 Protein kinase [Genera 67.6 34 0.00074 37.7 9.7 72 171-245 327-398 (690)
248 KOG0413 Uncharacterized conser 65.0 22 0.00048 40.7 7.7 105 175-290 969-1074(1529)
249 COG5116 RPN2 26S proteasome re 64.6 59 0.0013 35.4 10.4 120 175-318 552-673 (926)
250 PF14663 RasGEF_N_2: Rapamycin 64.4 21 0.00045 30.3 6.0 40 175-215 9-48 (115)
251 PF10521 DUF2454: Protein of u 64.2 94 0.002 30.4 11.4 46 175-220 120-166 (282)
252 PF07814 WAPL: Wings apart-lik 64.0 1.7E+02 0.0037 29.7 15.4 93 132-226 22-116 (361)
253 PF12397 U3snoRNP10: U3 small 63.6 77 0.0017 26.6 9.5 67 175-247 7-76 (121)
254 PF11707 Npa1: Ribosome 60S bi 62.4 1.7E+02 0.0038 29.2 16.7 135 187-337 39-189 (330)
255 KOG2025 Chromosome condensatio 62.4 2.7E+02 0.0058 31.3 17.5 121 115-242 64-190 (892)
256 PF07814 WAPL: Wings apart-lik 62.2 54 0.0012 33.3 9.7 83 185-268 33-116 (361)
257 COG5240 SEC21 Vesicle coat com 62.0 50 0.0011 36.0 9.3 97 146-248 444-557 (898)
258 KOG1943 Beta-tubulin folding c 61.8 1.2E+02 0.0025 35.3 12.7 154 174-337 341-501 (1133)
259 PF08216 CTNNBL: Catenin-beta- 61.8 12 0.00025 31.7 3.9 42 151-192 64-105 (108)
260 KOG1078 Vesicle coat complex C 61.2 55 0.0012 36.6 9.8 146 130-288 353-531 (865)
261 cd03565 VHS_Tom1 VHS domain fa 60.8 1.2E+02 0.0025 26.7 11.1 70 176-245 40-115 (141)
262 KOG1078 Vesicle coat complex C 60.6 77 0.0017 35.6 10.7 94 146-244 423-531 (865)
263 PF10521 DUF2454: Protein of u 60.4 58 0.0013 31.9 9.2 119 217-335 120-252 (282)
264 cd03565 VHS_Tom1 VHS domain fa 59.4 87 0.0019 27.5 9.3 91 235-335 20-114 (141)
265 PF09758 FPL: Uncharacterised 59.0 60 0.0013 29.1 8.1 128 202-334 12-147 (149)
266 COG5098 Chromosome condensatio 57.1 50 0.0011 36.7 8.5 105 176-289 301-415 (1128)
267 PF08389 Xpo1: Exportin 1-like 56.7 45 0.00099 28.2 7.0 80 112-198 67-148 (148)
268 cd03572 ENTH_epsin_related ENT 56.6 73 0.0016 27.5 8.0 90 236-336 21-119 (122)
269 PF14726 RTTN_N: Rotatin, an a 55.2 1.2E+02 0.0026 25.2 8.8 84 148-232 2-87 (98)
270 PF12463 DUF3689: Protein of u 55.0 2.3E+02 0.005 28.3 13.6 129 208-340 1-177 (303)
271 KOG2274 Predicted importin 9 [ 54.9 3.9E+02 0.0084 30.8 17.9 190 148-352 506-705 (1005)
272 KOG3665 ZYG-1-like serine/thre 53.0 1.3E+02 0.0027 33.7 11.2 152 157-315 495-675 (699)
273 PF04388 Hamartin: Hamartin pr 52.6 97 0.0021 34.4 10.2 57 231-288 83-139 (668)
274 KOG0413 Uncharacterized conser 51.4 76 0.0017 36.6 8.9 91 188-290 945-1036(1529)
275 COG5656 SXM1 Importin, protein 51.1 1.3E+02 0.0027 34.0 10.3 113 173-290 407-529 (970)
276 PF12830 Nipped-B_C: Sister ch 49.5 2.1E+02 0.0045 26.1 13.2 105 146-255 21-132 (187)
277 KOG2199 Signal transducing ada 49.3 1.2E+02 0.0026 31.5 9.3 93 136-233 12-106 (462)
278 cd03562 CID CID (CTD-Interacti 47.3 91 0.002 25.8 7.2 89 185-285 16-104 (114)
279 KOG0211 Protein phosphatase 2A 47.2 2.6E+02 0.0055 31.7 12.4 138 182-335 526-663 (759)
280 KOG1820 Microtubule-associated 47.0 45 0.00099 37.8 6.6 72 176-247 373-445 (815)
281 KOG1020 Sister chromatid cohes 46.8 5.1E+02 0.011 31.7 14.9 138 189-336 1136-1295(1692)
282 PF14663 RasGEF_N_2: Rapamycin 46.4 70 0.0015 27.0 6.3 39 217-256 9-47 (115)
283 KOG0915 Uncharacterized conser 46.3 6.4E+02 0.014 30.9 19.2 207 113-338 941-1162(1702)
284 PF08506 Cse1: Cse1; InterPro 46.1 1.7E+02 0.0037 30.0 10.2 94 142-240 264-370 (370)
285 KOG0414 Chromosome condensatio 46.0 1.9E+02 0.004 34.2 11.1 110 176-290 314-429 (1251)
286 cd00197 VHS_ENTH_ANTH VHS, ENT 45.9 1.4E+02 0.003 24.7 8.1 72 217-288 38-114 (115)
287 KOG4464 Signaling protein RIC- 45.9 2.2E+02 0.0049 29.9 10.7 81 186-269 109-198 (532)
288 PF04869 Uso1_p115_head: Uso1 44.8 3.2E+02 0.007 27.4 11.7 103 186-288 109-230 (312)
289 smart00567 EZ_HEAT E-Z type HE 44.2 28 0.00061 21.6 2.7 28 189-227 2-29 (30)
290 PF13001 Ecm29: Proteasome sta 44.1 87 0.0019 33.4 8.0 82 167-250 363-448 (501)
291 PF04388 Hamartin: Hamartin pr 44.0 3E+02 0.0065 30.6 12.4 58 275-337 83-141 (668)
292 KOG2676 Uncharacterized conser 42.8 24 0.00051 36.1 3.2 61 156-216 379-442 (478)
293 PF06012 DUF908: Domain of Unk 42.8 1.1E+02 0.0024 30.6 8.2 75 149-223 238-323 (329)
294 KOG4464 Signaling protein RIC- 42.7 3.8E+02 0.0081 28.3 11.7 79 231-317 112-197 (532)
295 PF10257 RAI16-like: Retinoic 41.4 2.9E+02 0.0063 28.0 11.0 137 171-315 6-180 (353)
296 PF03130 HEAT_PBS: PBS lyase H 40.5 12 0.00026 23.2 0.6 26 190-226 1-26 (27)
297 PF06685 DUF1186: Protein of u 40.1 3.6E+02 0.0078 26.2 13.4 96 185-304 53-152 (249)
298 KOG0567 HEAT repeat-containing 39.9 1.7E+02 0.0038 28.8 8.5 90 218-334 189-278 (289)
299 PF01417 ENTH: ENTH domain; I 39.4 1.6E+02 0.0034 24.9 7.5 94 232-335 19-120 (125)
300 PF07923 N1221: N1221-like pro 38.8 58 0.0013 32.1 5.3 61 167-227 53-127 (293)
301 PF04510 DUF577: Family of unk 38.8 3.2E+02 0.0068 25.2 9.7 88 177-270 6-96 (174)
302 PF07571 DUF1546: Protein of u 36.9 1.9E+02 0.004 23.4 7.2 52 187-243 19-76 (92)
303 KOG1822 Uncharacterized conser 36.6 1.5E+02 0.0032 36.7 8.7 111 175-289 877-988 (2067)
304 KOG0301 Phospholipase A2-activ 36.2 6.5E+02 0.014 28.1 17.2 164 182-359 552-726 (745)
305 smart00802 UME Domain in UVSB 36.1 2.4E+02 0.0051 23.7 7.8 69 133-205 13-85 (107)
306 PRK14707 hypothetical protein; 36.0 1.1E+03 0.023 30.5 16.0 138 148-288 810-949 (2710)
307 KOG1525 Sister chromatid cohes 35.7 90 0.002 37.2 6.9 147 173-336 258-405 (1266)
308 COG5656 SXM1 Importin, protein 35.5 7.2E+02 0.016 28.3 16.2 89 175-268 461-549 (970)
309 KOG1087 Cytosolic sorting prot 35.5 1.8E+02 0.0039 31.0 8.5 66 176-241 40-108 (470)
310 PF13001 Ecm29: Proteasome sta 34.8 3.3E+02 0.0072 29.0 10.6 160 120-289 260-443 (501)
311 PF01365 RYDR_ITPR: RIH domain 34.8 1.6E+02 0.0035 27.1 7.4 118 206-336 33-169 (207)
312 PF06685 DUF1186: Protein of u 33.9 4.5E+02 0.0097 25.5 13.6 72 173-256 72-153 (249)
313 PF13251 DUF4042: Domain of un 33.8 91 0.002 28.8 5.4 69 177-248 104-177 (182)
314 PF12783 Sec7_N: Guanine nucle 33.7 3.4E+02 0.0073 24.0 9.7 87 169-258 68-159 (168)
315 PLN03205 ATR interacting prote 33.0 3.8E+02 0.0082 28.2 10.0 162 175-339 324-519 (652)
316 PF10257 RAI16-like: Retinoic 30.5 5.8E+02 0.013 25.8 11.5 150 209-364 2-187 (353)
317 KOG2549 Transcription initiati 30.0 7.5E+02 0.016 26.9 12.0 128 114-243 206-368 (576)
318 cd08050 TAF6 TATA Binding Prot 29.8 4.4E+02 0.0096 26.6 10.1 62 187-249 230-301 (343)
319 PF05327 RRN3: RNA polymerase 29.7 7.5E+02 0.016 26.8 14.5 139 104-254 6-163 (563)
320 PF08064 UME: UME (NUC010) dom 29.5 3.3E+02 0.0071 22.5 8.0 65 137-205 17-85 (107)
321 PLN03076 ARF guanine nucleotid 29.4 6.3E+02 0.014 31.7 12.7 130 149-289 1108-1253(1780)
322 PF08216 CTNNBL: Catenin-beta- 29.1 84 0.0018 26.6 4.0 39 235-274 65-103 (108)
323 KOG2956 CLIP-associating prote 28.8 7.5E+02 0.016 26.5 13.4 143 132-289 330-477 (516)
324 PF10274 ParcG: Parkin co-regu 27.9 4.9E+02 0.011 24.1 10.3 78 175-254 39-118 (183)
325 TIGR00117 acnB aconitate hydra 26.9 3.1E+02 0.0067 31.4 8.9 103 129-245 23-126 (844)
326 PF12783 Sec7_N: Guanine nucle 26.7 4.4E+02 0.0096 23.2 9.7 77 212-289 69-146 (168)
327 cd08050 TAF6 TATA Binding Prot 26.6 6.7E+02 0.015 25.3 13.2 130 104-243 171-338 (343)
328 KOG1087 Cytosolic sorting prot 26.5 1.8E+02 0.0039 30.9 6.8 71 217-287 39-110 (470)
329 PRK14707 hypothetical protein; 26.1 1.5E+03 0.033 29.2 17.1 176 151-335 392-570 (2710)
330 PF04821 TIMELESS: Timeless pr 26.1 4.3E+02 0.0093 25.6 9.0 170 148-337 9-209 (266)
331 TIGR02302 aProt_lowcomp conser 26.1 1.1E+02 0.0024 35.0 5.4 21 104-124 519-539 (851)
332 PF12612 TFCD_C: Tubulin foldi 26.0 3.2E+02 0.0069 25.0 7.7 29 216-246 70-98 (193)
333 PF13779 DUF4175: Domain of un 25.9 1.3E+02 0.0028 34.3 5.9 20 105-124 489-508 (820)
334 PF01465 GRIP: GRIP domain; I 25.7 1.5E+02 0.0032 20.9 4.2 34 311-344 11-44 (46)
335 PF09758 FPL: Uncharacterised 25.4 3E+02 0.0064 24.7 7.0 87 245-335 13-100 (149)
336 KOG0915 Uncharacterized conser 25.4 9.9E+02 0.021 29.4 12.7 181 149-337 1055-1246(1702)
337 KOG2038 CAATT-binding transcri 25.0 3.3E+02 0.0071 30.9 8.4 62 185-251 315-376 (988)
338 PF09324 DUF1981: Domain of un 24.5 2.1E+02 0.0046 22.7 5.4 47 217-268 18-65 (86)
339 cd03572 ENTH_epsin_related ENT 24.1 4.7E+02 0.01 22.5 9.1 72 217-288 39-118 (122)
340 PF12911 OppC_N: N-terminal TM 23.5 91 0.002 22.3 2.9 23 4-26 13-35 (56)
341 PF04499 SAPS: SIT4 phosphatas 23.5 3E+02 0.0065 29.3 7.8 42 298-339 53-95 (475)
342 PF07923 N1221: N1221-like pro 22.7 2E+02 0.0044 28.2 6.1 62 303-364 56-131 (293)
343 smart00582 RPR domain present 22.6 2.6E+02 0.0056 23.1 5.9 61 179-249 5-65 (121)
344 PF09324 DUF1981: Domain of un 22.4 2.2E+02 0.0047 22.7 5.1 52 305-361 15-67 (86)
345 PF08064 UME: UME (NUC010) dom 21.8 3.3E+02 0.0073 22.5 6.3 69 216-289 11-83 (107)
346 PF03810 IBN_N: Importin-beta 21.7 1.5E+02 0.0032 22.2 3.9 32 174-205 14-47 (77)
347 PF11894 DUF3414: Protein of u 21.5 2.7E+02 0.0058 34.5 7.8 60 190-249 580-643 (1691)
348 KOG1822 Uncharacterized conser 21.4 1.3E+03 0.029 29.1 12.9 119 217-336 959-1088(2067)
349 PF08454 RIH_assoc: RyR and IP 20.9 1.7E+02 0.0037 24.6 4.4 44 184-227 63-107 (109)
350 cd00183 TFIIS_I N-terminal dom 20.6 4.1E+02 0.0088 20.5 8.2 50 146-199 19-69 (76)
351 PRK13159 cytochrome c-type bio 20.2 1.2E+02 0.0027 27.3 3.5 7 1-7 1-7 (155)
352 PRK13150 cytochrome c-type bio 20.2 1.2E+02 0.0025 27.5 3.4 39 1-43 1-39 (159)
353 PF12074 DUF3554: Domain of un 20.2 2.5E+02 0.0054 28.0 6.2 81 145-229 174-257 (339)
No 1
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-41 Score=331.26 Aligned_cols=312 Identities=33% Similarity=0.461 Sum_probs=259.9
Q ss_pred CCCChHHHHHHHhhcC--CCccccchh--------hccCCCCHHHHHHhHHHHHHHHHHcC---------CCCHHHHHHH
Q 015496 75 GFSSIDGMLQWAIGHS--DPAKLKETA--------QDVQRLSPSELKKRQMEIKELMEKLK---------TPSDAQLIQI 135 (405)
Q Consensus 75 ~~~~l~~LLkwsi~~s--~~~~~~~~~--------~~~~~~s~e~l~~r~~~L~~a~~~~~---------~~~d~~lmk~ 135 (405)
..++|+|+++|+..++ .|+.+.... .+.+ ++ +.|++|+.++|..-+ +....+.|+.
T Consensus 10 ~~~~~~gl~~ws~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---ke~~k~~~e~~~~~~e~~k~~~~~~~~~~~~~~~ 84 (342)
T KOG2160|consen 10 RPPNQEGLLEWSLQLSQSLGSRPDIQISGDLGMAEAKLK--DE---KEDRKWLQELMQAHTEDQKDFVEDMKVISDVMSM 84 (342)
T ss_pred cCccccchhhcccccccccCCCchhhhccchhhhhhhcc--Cc---ccchHHHHHHHHHhhhhhhhhcccchhHHHHHHh
Confidence 3678999999999998 554432110 1111 11 358999999987653 1222345555
Q ss_pred -HHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHH
Q 015496 136 -AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLE 214 (405)
Q Consensus 136 -al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle 214 (405)
++..+++++.++++|+.||++|+++||+||||++|++.|||.+++.+|+++++++|+.|+|+||+++||||++|+.|++
T Consensus 85 ~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E 164 (342)
T KOG2160|consen 85 IPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIE 164 (342)
T ss_pred hhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 6777888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhc
Q 015496 215 LGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE 293 (405)
Q Consensus 215 ~G~lp~Ll~LL~s~~-~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~ 293 (405)
.|++++|+.+|++++ ..++.||+||||+++||+++++..|...+|+..|+.++++++.++++++|+++++++|...
T Consensus 165 ~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~--- 241 (342)
T KOG2160|consen 165 LGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE--- 241 (342)
T ss_pred cccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh---
Confidence 999999999998765 4788999999999999999999999999999999999999777999999999999999964
Q ss_pred cCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHHHHHHhhhchhhhh
Q 015496 294 NMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRD 373 (405)
Q Consensus 294 ~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~~~~l~~~~~q~~ 373 (405)
+......+...++...+..+..+.+.++.|+++.++..++..-......+....++...|..+-+.+++....+.+.+
T Consensus 242 --~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~~~~~~~~~~l~e~l~~~~q~~~~~~~~~~e~~ 319 (342)
T KOG2160|consen 242 --DKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELSTRKELFVSLLNLEELLKSLIQIISDHAALEEERQ 319 (342)
T ss_pred --hhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555777789999999999999999999999999988865333333455566776777777666665555567899
Q ss_pred hHHHHHHHHHHHHHHHhhhcccc
Q 015496 374 YAMDVEALRREVELIFFRKLGKV 396 (405)
Q Consensus 374 ~~~d~~~l~~e~~~~~~~kl~~i 396 (405)
|+.++...+.|+..+++++++++
T Consensus 320 l~~~l~~~~~e~~~~~~~~~~~~ 342 (342)
T KOG2160|consen 320 LVNSLWEICGEVPSILRKLLGSL 342 (342)
T ss_pred HHHHHHHHhcccHHHHHHHhccC
Confidence 99999999999999999997653
No 2
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.9e-33 Score=270.84 Aligned_cols=252 Identities=16% Similarity=0.191 Sum_probs=226.4
Q ss_pred CHHHHHHHHHHHHHccCCCCc--hhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHH
Q 015496 146 SLEDSQRALQELLILVEPIDN--ANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM 222 (405)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDn--A~~~~~~Ggi~~Lv~lL-~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll 222 (405)
+.|++..|.-.++.++...++ ....+..|.+|.++.++ ++...-+++.|+|+|+|++++...+++.|+++|++|.++
T Consensus 84 Die~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfi 163 (526)
T COG5064 84 DIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFI 163 (526)
T ss_pred HHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHH
Confidence 567888888889888755443 66899999999999999 577888999999999999999999999999999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchh
Q 015496 223 KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPL 302 (405)
Q Consensus 223 ~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~ 302 (405)
+||.+++..++.+++|||+|++++++.+++.++++|.+++|+.++.+...+.++.|++.|+|+|||+++ ++.|+...
T Consensus 164 qlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGk--nP~P~w~~- 240 (526)
T COG5064 164 QLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGK--NPPPDWSN- 240 (526)
T ss_pred HHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCC--CCCCchHH-
Confidence 999999999999999999999999999999999999999999999887667899999999999999986 55554322
Q ss_pred HHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHHHH---------HH---hhh-ch
Q 015496 303 FRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQL---------QE---VML-EE 369 (405)
Q Consensus 303 l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~~---------~~---l~~-~~ 369 (405)
+ ...++.|.+|+.+.|+++.-.|+||+++|++++.++.+.+. +.|++++|..|..+. |+ +++ +|
T Consensus 241 i--sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avl-d~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D 317 (526)
T COG5064 241 I--SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVL-DVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSD 317 (526)
T ss_pred H--HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHH-hcCCcHHHHHHhcCccccccCHHHHhhcCeeecCc
Confidence 2 24789999999999999999999999999999999999999 999999999998654 33 667 89
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhccccccchhccC
Q 015496 370 DQRDYAMDVEALRREVELIFFRKLGKVGTRLCWNK 404 (405)
Q Consensus 370 ~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~~~~~~ 404 (405)
+||+...+|++|+.++-++.++| +.|+||+|||-
T Consensus 318 ~QTqviI~~G~L~a~~~lLs~~k-e~irKEaCWTi 351 (526)
T COG5064 318 DQTQVIINCGALKAFRSLLSSPK-ENIRKEACWTI 351 (526)
T ss_pred cceehheecccHHHHHHHhcChh-hhhhhhhheee
Confidence 99999999999999999999999 99999999983
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-31 Score=273.44 Aligned_cols=250 Identities=16% Similarity=0.207 Sum_probs=221.6
Q ss_pred CHHHHHHHHHHHHHccCCCCc--hhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHH
Q 015496 146 SLEDSQRALQELLILVEPIDN--ANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM 222 (405)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDn--A~~~~~~Ggi~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll 222 (405)
+.+.+..+...+..+.....| -+..+..|.+|.+|.+|. +.++.+|+.|||+|+|+|+++++.++.|++.|++|.|+
T Consensus 79 ~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi 158 (514)
T KOG0166|consen 79 DPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFI 158 (514)
T ss_pred CHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHH
Confidence 566788899999998866553 455666699999999996 56799999999999999999999999999999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchh
Q 015496 223 KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPL 302 (405)
Q Consensus 223 ~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~ 302 (405)
+|+.+++..++++|+|||||++++++..++.++++|++++|+.++..+ ....+.|.++|+|+|||+++ ++.|. .
T Consensus 159 ~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~-~~~~~lRn~tW~LsNlcrgk--~P~P~---~ 232 (514)
T KOG0166|consen 159 QLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKS-DKLSMLRNATWTLSNLCRGK--NPSPP---F 232 (514)
T ss_pred HHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccc-cchHHHHHHHHHHHHHHcCC--CCCCc---H
Confidence 999999999999999999999999999999999999999999999876 34679999999999999976 33332 1
Q ss_pred HHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHHHH---------HH---hhh-ch
Q 015496 303 FRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQL---------QE---VML-EE 369 (405)
Q Consensus 303 l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~~---------~~---l~~-~~ 369 (405)
-.-..+++.|..+|.+.|.+++..|+|||++|+.++.+..+++. +.|+.++|..|..+. |+ +++ +|
T Consensus 233 ~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi-~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d 311 (514)
T KOG0166|consen 233 DVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVI-DAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSD 311 (514)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHH-HccchHHHHHHHcCCCcccccHHHhhccceeeccH
Confidence 12247899999999999999999999999999999999999999 888989988888544 33 556 89
Q ss_pred hhhhhHHHHHHHHHHHHHHH-hhhccccccchhcc
Q 015496 370 DQRDYAMDVEALRREVELIF-FRKLGKVGTRLCWN 403 (405)
Q Consensus 370 ~q~~~~~d~~~l~~e~~~~~-~~kl~~i~~~~~~~ 403 (405)
+||+.+.|+++|++...+++ +.| ++|+|||||+
T Consensus 312 ~QTq~vi~~~~L~~l~~ll~~s~~-~~ikkEAcW~ 345 (514)
T KOG0166|consen 312 EQTQVVINSGALPVLSNLLSSSPK-ESIKKEACWT 345 (514)
T ss_pred HHHHHHHhcChHHHHHHHhccCcc-hhHHHHHHHH
Confidence 99999999999999999999 677 8899999997
No 4
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.8e-25 Score=226.66 Aligned_cols=261 Identities=18% Similarity=0.229 Sum_probs=224.0
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015496 133 IQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (405)
Q Consensus 133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve-~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~ 211 (405)
+...++.+... .++.-+..|...|.++.. .-+..+.+++.|.+|.|+.+|.+++..|+++|+|+|||++...|.+++.
T Consensus 111 v~~lV~~l~~~-~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~ 189 (514)
T KOG0166|consen 111 VPRLVEFLSRD-DNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDY 189 (514)
T ss_pred HHHHHHHHccC-CChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHH
Confidence 34455666533 256778889999999874 4578899999999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496 212 VLELGALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (405)
Q Consensus 212 vle~G~lp~Ll~LL~s~~~-~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~ 290 (405)
++++|++++|+.++..+.. .....+.|+|||+||+..|.-..-.-...++.|..++.+. |..+...|+|+++||+.
T Consensus 190 vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~--D~~Vl~Da~WAlsyLsd- 266 (514)
T KOG0166|consen 190 VLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHST--DEEVLTDACWALSYLTD- 266 (514)
T ss_pred HHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHhc-
Confidence 9999999999999988765 6788999999999999743322222356889999999986 77899999999999995
Q ss_pred hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHH-H----HHH-
Q 015496 291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ-Q----LQE- 364 (405)
Q Consensus 291 ~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~-~----~~~- 364 (405)
..++..+.+++.|+++.|+++|.+.+..++..|++++++++.+++.+.+.+. ++|+.|.|..|.. + ++.
T Consensus 267 ----g~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi-~~~~L~~l~~ll~~s~~~~ikkE 341 (514)
T KOG0166|consen 267 ----GSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVI-NSGALPVLSNLLSSSPKESIKKE 341 (514)
T ss_pred ----CChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHH-hcChHHHHHHHhccCcchhHHHH
Confidence 4678888999999999999999999999999999999999999999999999 8888888887775 3 222
Q ss_pred -------hhh-chhhhhhHHHHHHHHHHHHHHHhhhccccccchhcc
Q 015496 365 -------VML-EEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCWN 403 (405)
Q Consensus 365 -------l~~-~~~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~~~~~ 403 (405)
+.. +..|.+++.|.+.++...++|...= ..++|||||.
T Consensus 342 AcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~e-f~~rKEAawa 387 (514)
T KOG0166|consen 342 ACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAE-FDIRKEAAWA 387 (514)
T ss_pred HHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccc-hHHHHHHHHH
Confidence 222 5679999999999999999999998 7999999995
No 5
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.93 E-value=1.8e-25 Score=216.92 Aligned_cols=243 Identities=18% Similarity=0.255 Sum_probs=207.3
Q ss_pred HHHHHHHHHccCCC-CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC
Q 015496 151 QRALQELLILVEPI-DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF 229 (405)
Q Consensus 151 ~~AL~~L~~Lve~i-DnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~ 229 (405)
..|...|.++...- +.....++.|.+|.++++|.+++.++|.+|.|+|||+|...+.+++.|+++|++.+++.++.+..
T Consensus 133 fEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~ 212 (526)
T COG5064 133 FEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSA 212 (526)
T ss_pred HHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhcc
Confidence 45666677665443 44567788999999999999999999999999999999999999999999999999999998765
Q ss_pred H--HHHHHHHHHHHHHhcCC-hhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhC
Q 015496 230 V--EEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR 306 (405)
Q Consensus 230 ~--~v~~kAl~ALS~lir~~-~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~ 306 (405)
. ++...+.|.|||+||+. |+--..- -.-.++.|.+++.+. |+.+...|+|+|++|.. ...+....+.+.
T Consensus 213 ~~ismlRn~TWtLSNlcRGknP~P~w~~-isqalpiL~KLiys~--D~evlvDA~WAiSYlsD-----g~~E~i~avld~ 284 (526)
T COG5064 213 IHISMLRNATWTLSNLCRGKNPPPDWSN-ISQALPILAKLIYSR--DPEVLVDACWAISYLSD-----GPNEKIQAVLDV 284 (526)
T ss_pred chHHHHHHhHHHHHHhhCCCCCCCchHH-HHHHHHHHHHHHhhc--CHHHHHHHHHHHHHhcc-----CcHHHHHHHHhc
Confidence 4 66789999999999994 3322221 134689999999885 67789999999999985 345677889999
Q ss_pred CcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHHHHHH------------hhh-chhhhh
Q 015496 307 FFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQE------------VML-EEDQRD 373 (405)
Q Consensus 307 g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~~~~------------l~~-~~~q~~ 373 (405)
|..++|+++|.+++..++..+++.+++++.+++.+.+++. .||..+.+..|..+.++ +.. +-+|.+
T Consensus 285 g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI-~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiq 363 (526)
T COG5064 285 GIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVII-NCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQ 363 (526)
T ss_pred CCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehhe-ecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHH
Confidence 9999999999999999999999999999999988999999 99999998888865543 111 456999
Q ss_pred hHHHHHHHHHHHHHHHhhhccccccchhcc
Q 015496 374 YAMDVEALRREVELIFFRKLGKVGTRLCWN 403 (405)
Q Consensus 374 ~~~d~~~l~~e~~~~~~~kl~~i~~~~~~~ 403 (405)
++.|....+-.+++|...-+ +|+|||||.
T Consensus 364 avid~nliPpLi~lls~ae~-k~kKEACWA 392 (526)
T COG5064 364 AVIDANLIPPLIHLLSSAEY-KIKKEACWA 392 (526)
T ss_pred HHHhcccchHHHHHHHHHHH-HHHHHHHHH
Confidence 99999999999999999995 999999995
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.84 E-value=3.6e-19 Score=206.10 Aligned_cols=251 Identities=14% Similarity=0.079 Sum_probs=207.3
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc
Q 015496 136 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 215 (405)
Q Consensus 136 al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~ 215 (405)
.++.+.+.+ +.-.+..+...|..++.++.++..|.+.|++++||.+|.+.+.++|..++|+|.+++.++++.++.+.+.
T Consensus 367 LV~Llr~k~-p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ 445 (2102)
T PLN03200 367 LVKLLKPRD-TKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGR 445 (2102)
T ss_pred HHHHhCCCC-CchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 445555554 2223577888899999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccC
Q 015496 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (405)
Q Consensus 216 G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~ 295 (405)
|++|.|+++|.+++..++..|+|+|+++..+++..+..++++||+++|+++|.++ +.++|..|+|+|+||+.+
T Consensus 446 ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~--~~~iqeeAawAL~NLa~~----- 518 (2102)
T PLN03200 446 EGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG--SQKAKEDSATVLWNLCCH----- 518 (2102)
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCC-----
Confidence 9999999999999999999999999999999999999999999999999999986 678999999999999952
Q ss_pred CCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHH-----------HHHHH
Q 015496 296 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR-----------QQLQE 364 (405)
Q Consensus 296 ~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~-----------~~~~~ 364 (405)
++..+..+.+.|+++.|+++|++++..+++.|+++|.+|+..++.. .+ .+.+..|. ..+..
T Consensus 519 ~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~--~I------~~Lv~LLlsdd~~~~~~aL~vLgn 590 (2102)
T PLN03200 519 SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA--TI------SQLTALLLGDLPESKVHVLDVLGH 590 (2102)
T ss_pred cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh--HH------HHHHHHhcCCChhHHHHHHHHHHH
Confidence 3334445557899999999999999999999999999998765431 11 11111111 11111
Q ss_pred hhh----chhhhhhHHHHHHHHHHHHHHHhhhccccccchhcc
Q 015496 365 VML----EEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCWN 403 (405)
Q Consensus 365 l~~----~~~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~~~~~ 403 (405)
+++ .+.|++.+.+.+.++..++++.+++ +.++|++||+
T Consensus 591 Ilsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs-~~ikk~Aa~i 632 (2102)
T PLN03200 591 VLSVASLEDLVREGSAANDALRTLIQLLSSSK-EETQEKAASV 632 (2102)
T ss_pred HHhhcchhHHHHHhhhccccHHHHHHHHcCCC-HHHHHHHHHH
Confidence 222 3446666667799999999999999 9999999996
No 7
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.84 E-value=5.5e-19 Score=204.57 Aligned_cols=245 Identities=11% Similarity=0.064 Sum_probs=203.6
Q ss_pred CHHHHHHHHHHHHHccCC-CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh
Q 015496 146 SLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (405)
Q Consensus 146 t~e~k~~AL~~L~~Lve~-iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~L 224 (405)
+.|.+..+...|.+++.+ .++...+.+.||+|+|+++|.++++.+|..|+|+|++++.+|++++..++++|+||+|+++
T Consensus 417 ~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~L 496 (2102)
T PLN03200 417 TADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQL 496 (2102)
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 468899999999999955 6778899999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchh-----------c
Q 015496 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQL-----------E 293 (405)
Q Consensus 225 L~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~-----------~ 293 (405)
|++++..+++.|+|||+|++.+.+..+..+.++|++++|+++|+++ +.+.|..|+|+|.+|+.+.. .
T Consensus 497 L~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg--d~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLl 574 (2102)
T PLN03200 497 LETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG--GPKGQEIAAKTLTKLVRTADAATISQLTALLL 574 (2102)
T ss_pred HcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Confidence 9999999999999999999998766677777899999999999986 67899999999999974310 0
Q ss_pred cCCCC---------------------cchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCch
Q 015496 294 NMHKV---------------------EPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLD 352 (405)
Q Consensus 294 ~~~~~---------------------~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~ 352 (405)
..++. ........|.++.|+++|.+++..+++.|+++|.++..+..+.++.+...+|++
T Consensus 575 sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIp 654 (2102)
T PLN03200 575 GDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIIN 654 (2102)
T ss_pred CCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHH
Confidence 00000 001112468999999999999999999999999999998888777777789999
Q ss_pred HHHHHHHHHH----HH-------hhh--chhhhhhHHHHHHHHHHHHHHHhhh
Q 015496 353 TALERLRQQL----QE-------VML--EEDQRDYAMDVEALRREVELIFFRK 392 (405)
Q Consensus 353 ~~L~~L~~~~----~~-------l~~--~~~q~~~~~d~~~l~~e~~~~~~~k 392 (405)
|.+..|...- ++ +.. +++|+.++...++++-..+++..+.
T Consensus 655 PLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d 707 (2102)
T PLN03200 655 PCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSS 707 (2102)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCC
Confidence 9999888332 11 221 4667788888888888888886553
No 8
>PF08609 Fes1: Nucleotide exchange factor Fes1; InterPro: IPR013918 Fes1 is a cytosolic homologue of Sls1, an ER protein which has nucleotide exchange factor activity. Fes1 in yeast has been shown to bind to the molecular chaperone Hsp70 and has adenyl-nucleotide exchange factor activity [].
Probab=99.75 E-value=1.3e-18 Score=142.32 Aligned_cols=89 Identities=34% Similarity=0.533 Sum_probs=70.8
Q ss_pred CChHHHHHHHhhcCCCccccchhhccCCCCHHHHHHhHHHHHHHHHHc-CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 015496 77 SSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKL-KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQ 155 (405)
Q Consensus 77 ~~l~~LLkwsi~~s~~~~~~~~~~~~~~~s~e~l~~r~~~L~~a~~~~-~~~~d~~lmk~al~~L~~~~~t~e~k~~AL~ 155 (405)
++|+|||||||+||+.+...... ...++.+ +|+++..++|+.+ ++|+|+++||+++++|.+++.+.|+|+.||+
T Consensus 3 ~~l~~LLkWsI~ns~~~~~~~~~-~~~~~~~----~~~~l~~~~L~~l~~~~sda~lMK~a~~vl~~~~~t~edk~~Ald 77 (92)
T PF08609_consen 3 PNLNGLLKWSIENSTTSASDAPP-SAEQPDE----ERRQLDPEALDALFGGPSDAELMKEAMEVLEDPEVTLEDKLIALD 77 (92)
T ss_pred HHHHHHHHHHHHcCCCCcccccc-CcCCchh----hhhhccHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 57999999999999544422211 1122222 2667777777665 5999999999999999999999999999999
Q ss_pred HHHHccCCCCchhHH
Q 015496 156 ELLILVEPIDNANDL 170 (405)
Q Consensus 156 ~L~~Lve~iDnA~~~ 170 (405)
+|++|||+|||||++
T Consensus 78 ~le~LVE~IDNANnl 92 (92)
T PF08609_consen 78 NLEELVENIDNANNL 92 (92)
T ss_pred HHHHHHHcccccccC
Confidence 999999999999985
No 9
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=1.2e-15 Score=149.93 Aligned_cols=226 Identities=17% Similarity=0.218 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcC--cHHHHHHhh
Q 015496 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELG--ALSKLMKMV 225 (405)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G--~lp~Ll~LL 225 (405)
..+-.++..|..+.+..+|.+.++..||+|.|+.+|++.++++|..++.+|++++-. ...++...+.+ .+|.|++|.
T Consensus 182 rvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lm 260 (550)
T KOG4224|consen 182 RVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLM 260 (550)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHH
Confidence 455678999999999999999999999999999999999999999999999999964 66788888888 999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh
Q 015496 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (405)
Q Consensus 226 ~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~ 305 (405)
+++++.++-.|-.||.++..+ ...+..++++|++|.++++|+++ ..++....+++|.|+..+ |-.-..+.+
T Consensus 261 d~~s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~--~~plilasVaCIrnisih------plNe~lI~d 331 (550)
T KOG4224|consen 261 DDGSDKVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSP--MGPLILASVACIRNISIH------PLNEVLIAD 331 (550)
T ss_pred hCCChHHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCc--chhHHHHHHHHHhhcccc------cCcccceec
Confidence 999999999999999999765 45577788999999999999987 455677889999999854 333446789
Q ss_pred CCcHHHHHHhccCCCh-HHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHHHH---HH-------hhh-chhhhh
Q 015496 306 RFFLKSVVDLTASADL-DLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQL---QE-------VML-EEDQRD 373 (405)
Q Consensus 306 ~g~l~~Lv~LL~~~D~-~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~~---~~-------l~~-~~~q~~ 373 (405)
.||++.||.+|..+|. ++|-+|..+|.+|+..++..+.++...+.++...+.+++.. ++ ... +|..|+
T Consensus 332 agfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~ 411 (550)
T KOG4224|consen 332 AGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKE 411 (550)
T ss_pred ccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHH
Confidence 9999999999998755 49999999999999877777888884555555555555322 22 111 566677
Q ss_pred hHHHHHHHHH
Q 015496 374 YAMDVEALRR 383 (405)
Q Consensus 374 ~~~d~~~l~~ 383 (405)
|..|.+-++-
T Consensus 412 ~lld~gi~~i 421 (550)
T KOG4224|consen 412 ALLDSGIIPI 421 (550)
T ss_pred HHhhcCCcce
Confidence 7766544443
No 10
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=6.1e-15 Score=145.00 Aligned_cols=203 Identities=15% Similarity=0.149 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc
Q 015496 147 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK 226 (405)
Q Consensus 147 ~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~ 226 (405)
..-+..+-.++-++.-+.+|.--+++++|+.+|+.....+..++|+.|..||.+++.- ...+..+...|++.+|.+|-+
T Consensus 99 ~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLak 177 (550)
T KOG4224|consen 99 KCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAK 177 (550)
T ss_pred hhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcc
Confidence 3445667778888888889999999999999999999999999999999999999986 667888889999999999888
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhC
Q 015496 227 SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR 306 (405)
Q Consensus 227 s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~ 306 (405)
+.+..++..+..||+|+. |..++++.++.+||+++|+.+++++ +..+|..++.+|++++. +...+..+.+.
T Consensus 178 skdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll~s~--d~dvqyycttaisnIaV------d~~~Rk~Laqa 248 (550)
T KOG4224|consen 178 SKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLLKSG--DLDVQYYCTTAISNIAV------DRRARKILAQA 248 (550)
T ss_pred cchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhhccC--ChhHHHHHHHHhhhhhh------hHHHHHHHHhc
Confidence 888899999999999996 5678899999999999999999987 66689999999999984 45567778777
Q ss_pred C--cHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHH
Q 015496 307 F--FLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ 360 (405)
Q Consensus 307 g--~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~ 360 (405)
+ +++.|+++...+++.++-.|..||.+|+++.+.++..++ .++++..++.|+.
T Consensus 249 ep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~-ag~lP~lv~Llqs 303 (550)
T KOG4224|consen 249 EPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVE-AGSLPLLVELLQS 303 (550)
T ss_pred ccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHh-cCCchHHHHHHhC
Confidence 6 999999999999999999999999999998776777776 7788777777763
No 11
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.58 E-value=5.3e-14 Score=117.39 Aligned_cols=118 Identities=25% Similarity=0.381 Sum_probs=111.6
Q ss_pred HHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh
Q 015496 169 DLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL 248 (405)
Q Consensus 169 ~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~ 248 (405)
.+++.|+++.++++|.++++.+|..|+++|++++.++|.....+++.|++|.|++++.++++.++..|+|+|++++.+.+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 46789999999999999999999999999999999999999999999999999999999889999999999999999988
Q ss_pred hhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015496 249 AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (405)
Q Consensus 249 ~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~ 288 (405)
.....+.+.|+++.|.++++++ +.++++.++|++.+|+
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~--~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSS--NEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcC--CHHHHHHHHHHHHHhh
Confidence 8888899999999999999986 6789999999999997
No 12
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.42 E-value=3.7e-12 Score=106.17 Aligned_cols=118 Identities=21% Similarity=0.229 Sum_probs=107.5
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (405)
Q Consensus 211 ~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~ 290 (405)
.+++.|+++.|++++.+++..++..++++|++++.+++.....+++.|+++.|..+|.++ +.+++..+++++++|+..
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE--DEEVVKAALWALRNLAAG 79 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC--CHHHHHHHHHHHHHHccC
Confidence 367899999999999998889999999999999999999999999999999999999986 678999999999999963
Q ss_pred hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015496 291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (405)
Q Consensus 291 ~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~ 335 (405)
.+.....+.+.|+++.+++++..++.++++.++++|.+|+
T Consensus 80 -----~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 80 -----PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred -----cHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 3455667788999999999999999999999999999986
No 13
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.2e-09 Score=108.25 Aligned_cols=188 Identities=18% Similarity=0.160 Sum_probs=147.9
Q ss_pred HHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHH
Q 015496 155 QELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAV 234 (405)
Q Consensus 155 ~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~ 234 (405)
+...+.++..+..-++..+ ++..+--..+.+.+=+..|..-|-..+.+ -+....++..|++.+++..+.+++.++|+
T Consensus 66 e~~k~~~~~~~~~~~~~~~--~~~~~~~~~s~~le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~~~lR~ 142 (342)
T KOG2160|consen 66 EDQKDFVEDMKVISDVMSM--IPIVILNSSSVDLEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSDAELRE 142 (342)
T ss_pred hhhhhhcccchhHHHHHHh--hhhhccCcccCCHHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCcHHHHH
Confidence 3344566666666666666 22222222356778888999999999875 55677789999999999999999999999
Q ss_pred HHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHH
Q 015496 235 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD 314 (405)
Q Consensus 235 kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~ 314 (405)
.|+|.|+.+++|||..|..+++.||++.|+.++.++ .+...+.||.+++++|.++ ++.....|...+....|.+
T Consensus 143 ~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~-~~~~~r~kaL~AissLIRn-----~~~g~~~fl~~~G~~~L~~ 216 (342)
T KOG2160|consen 143 LAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSD-DPNTVRTKALFAISSLIRN-----NKPGQDEFLKLNGYQVLRD 216 (342)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccC-CCchHHHHHHHHHHHHHhc-----CcHHHHHHHhcCCHHHHHH
Confidence 999999999999999999999999999999999966 4677899999999999985 3444555666666889999
Q ss_pred hccC--CChHHHHHHHHHHHHHhcCChhhHHHHHhcCCch
Q 015496 315 LTAS--ADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLD 352 (405)
Q Consensus 315 LL~~--~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~ 352 (405)
.|.+ .+..++.+++..+..|++........+. .-|+.
T Consensus 217 vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~-~~~f~ 255 (342)
T KOG2160|consen 217 VLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS-SLGFQ 255 (342)
T ss_pred HHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH-Hhhhh
Confidence 9998 5788999999999999986544444333 44443
No 14
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.26 E-value=2.8e-10 Score=123.25 Aligned_cols=194 Identities=18% Similarity=0.168 Sum_probs=163.2
Q ss_pred HHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHH
Q 015496 152 RALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVE 231 (405)
Q Consensus 152 ~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~ 231 (405)
.++--|.++.++..+-..+.+.|++++|+++|++++.++...+..+|..++-. ++++..+.+.|++|+|++++.+++..
T Consensus 268 v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~ 346 (708)
T PF05804_consen 268 VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENED 346 (708)
T ss_pred HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHH
Confidence 45667889999999999999999999999999999999999999999999975 66899999999999999999999988
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHH
Q 015496 232 EAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKS 311 (405)
Q Consensus 232 v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~ 311 (405)
+...++..|.|+.- ++..+..+++.|.++.|+.+|.++ + .+.-+..++++|+. +++.+..|...++++.
T Consensus 347 l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~--~--~~~val~iLy~LS~------dd~~r~~f~~TdcIp~ 415 (708)
T PF05804_consen 347 LVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDP--N--FREVALKILYNLSM------DDEARSMFAYTDCIPQ 415 (708)
T ss_pred HHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCC--c--hHHHHHHHHHHhcc------CHhhHHHHhhcchHHH
Confidence 89999999999965 567899999999999999999875 2 45678999999984 5567788888899999
Q ss_pred HHHhccC-CChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHH
Q 015496 312 VVDLTAS-ADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 358 (405)
Q Consensus 312 Lv~LL~~-~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L 358 (405)
++++|.. ++..+...++.++.+|+.... +.+.+.+.+|+...+.+.
T Consensus 416 L~~~Ll~~~~~~v~~eliaL~iNLa~~~r-naqlm~~g~gL~~L~~ra 462 (708)
T PF05804_consen 416 LMQMLLENSEEEVQLELIALLINLALNKR-NAQLMCEGNGLQSLMKRA 462 (708)
T ss_pred HHHHHHhCCCccccHHHHHHHHHHhcCHH-HHHHHHhcCcHHHHHHHH
Confidence 9998655 566676667778888998755 446666466665555443
No 15
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.21 E-value=2.2e-09 Score=113.31 Aligned_cols=210 Identities=17% Similarity=0.165 Sum_probs=172.2
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc
Q 015496 136 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 215 (405)
Q Consensus 136 al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~ 215 (405)
.+..|.+. +.|+-..+.+.|..+.+..+-... ..+..+.|...|.|+++.||..+++.|+++++++....+.+.+.
T Consensus 43 lf~~L~~~--~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 43 LFDCLNTS--NREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHhhc--ChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 44455544 456666777788888777654443 34557888899999999999999999999999999888889999
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccC
Q 015496 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (405)
Q Consensus 216 G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~ 295 (405)
+.++.++.++.+++.++...|+-+|++++++ +...+.++..+++..|..++..+ +..+|.++..++.+++. .
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~--~~~vR~Rv~el~v~i~~-----~ 190 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQS--SDIVRCRVYELLVEIAS-----H 190 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhcc--CHHHHHHHHHHHHHHHh-----c
Confidence 9999999999999999999999999999975 55667788889999999999874 33467889999999985 4
Q ss_pred CCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHH
Q 015496 296 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 359 (405)
Q Consensus 296 ~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~ 359 (405)
+++....+.+.|+++.++..|.++|+-+|..++..|..|+.. +...+.+. ..|+.+.|..+.
T Consensus 191 S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~-~~g~~yL~-~~gi~~~L~~~l 252 (503)
T PF10508_consen 191 SPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET-PHGLQYLE-QQGIFDKLSNLL 252 (503)
T ss_pred CHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC-hhHHHHHH-hCCHHHHHHHHH
Confidence 667778888899999999999999999999999999999984 44555555 677766666654
No 16
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.20 E-value=6.4e-10 Score=107.39 Aligned_cols=175 Identities=17% Similarity=0.176 Sum_probs=135.8
Q ss_pred HhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 015496 171 SKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA 249 (405)
Q Consensus 171 ~~~Ggi~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~ 249 (405)
...+.++.|+.+|+ +.+|.++..|..++++.+. .|..|+.+.+.|+++.+..++.++++.++.+|++||.|+..+ .+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~e 86 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DE 86 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hh
Confidence 45567899999997 5789999999999999875 699999999999999999999999999999999999999765 44
Q ss_pred hHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHH
Q 015496 250 GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALA 329 (405)
Q Consensus 250 ~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~ 329 (405)
.+..+-. -+-.++...+..+ .+..+|..++.+|.+|+. .++....+. +.++.++.+|.+++..++.+++.
T Consensus 87 n~~~Ik~-~i~~Vc~~~~s~~-lns~~Q~agLrlL~nLtv------~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk 156 (254)
T PF04826_consen 87 NQEQIKM-YIPQVCEETVSSP-LNSEVQLAGLRLLTNLTV------TNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLK 156 (254)
T ss_pred hHHHHHH-HHHHHHHHHhcCC-CCCHHHHHHHHHHHccCC------CcchhhhHH--hhHHHHHHHHHcCChHHHHHHHH
Confidence 4444432 2334444444443 456789999999999974 233344443 47999999999999999999999
Q ss_pred HHHHHhcCChhhHHHHHhcCCchHHHHHH
Q 015496 330 AIKNLLQLRTTEALVLKDFCGLDTALERL 358 (405)
Q Consensus 330 aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L 358 (405)
+|.+|+..+...+..+. ..++...+..+
T Consensus 157 ~L~nLS~np~~~~~Ll~-~q~~~~~~~Lf 184 (254)
T PF04826_consen 157 VLVNLSENPDMTRELLS-AQVLSSFLSLF 184 (254)
T ss_pred HHHHhccCHHHHHHHHh-ccchhHHHHHH
Confidence 99999998765666665 55544444333
No 17
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=7.3e-08 Score=94.81 Aligned_cols=230 Identities=17% Similarity=0.088 Sum_probs=174.5
Q ss_pred CCC--HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcc-CCCCchhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHH
Q 015496 126 TPS--DAQLIQIAIDDLNNSTLSLEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKA 201 (405)
Q Consensus 126 ~~~--d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lv-e~iDnA~~~~~~Ggi~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~ 201 (405)
.|+ |++-|.-.++.|.....+.|--...+.-+..-+ -+.-|..+|++.|.++.+.+-|+ ++...+-..++|++.-+
T Consensus 138 qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l 217 (461)
T KOG4199|consen 138 QPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRAL 217 (461)
T ss_pred CcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHh
Confidence 465 677888888888877655555555666666533 44568999999999999997665 44445667889999888
Q ss_pred hcCCh---------HhHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCC
Q 015496 202 SQNNP---------LVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS 271 (405)
Q Consensus 202 aqNN~---------~~Q~~vle~G~lp~Ll~LL~s~-~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~ 271 (405)
....+ ...+.|.+.|++..|++.+... ++.+-..+..+|+.++-+ .+..+.+.+.||+..|+.++.+.+
T Consensus 218 ~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr-~E~C~~I~e~GGl~tl~~~i~d~n 296 (461)
T KOG4199|consen 218 LTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR-DEICKSIAESGGLDTLLRCIDDSN 296 (461)
T ss_pred cCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH-HHHHHHHHHccCHHHHHHHHhhhc
Confidence 75432 2455677888999999999764 356677788888888654 466777889999999999998753
Q ss_pred c-cHH-HHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhcc--CCChHHHHHHHHHHHHHhcCChhhHHHHHh
Q 015496 272 F-EIR-LHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA--SADLDLQEKALAAIKNLLQLRTTEALVLKD 347 (405)
Q Consensus 272 ~-~~k-l~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~--~~D~~v~E~al~aL~~L~~~~~~~~~~v~~ 347 (405)
. ..| +-+.++.+|+.|+ .+.+.++.+++.|..+.++.++. ++|+.+.+.++.+++.|+--.+++...+.+
T Consensus 297 ~~~~r~l~k~~lslLralA------G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie 370 (461)
T KOG4199|consen 297 EQGNRTLAKTCLSLLRALA------GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIE 370 (461)
T ss_pred hhhHHHHHHHHHHHHHHHh------CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHh
Confidence 1 223 4567888999988 46688899999999999999864 468999999999999988777777777774
Q ss_pred cCCchHHHHHHHHHH
Q 015496 348 FCGLDTALERLRQQL 362 (405)
Q Consensus 348 ~~Gl~~~L~~L~~~~ 362 (405)
.++..-.+..|+.|+
T Consensus 371 ~G~a~~avqAmkahP 385 (461)
T KOG4199|consen 371 AGAADLAVQAMKAHP 385 (461)
T ss_pred cchHHHHHHHHHhCc
Confidence 666677788888665
No 18
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.00 E-value=4.6e-08 Score=94.55 Aligned_cols=193 Identities=19% Similarity=0.137 Sum_probs=152.4
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhH
Q 015496 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ 209 (405)
Q Consensus 130 ~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q 209 (405)
++-++..+..|.... ++.-+..++-.+.......-+-+-+.+.||++.+..+|+++++.+|..|.++|.|++.+ .+.|
T Consensus 11 ~~~l~~Ll~lL~~t~-dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~en~ 88 (254)
T PF04826_consen 11 AQELQKLLCLLESTE-DPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DENQ 88 (254)
T ss_pred HHHHHHHHHHHhcCC-ChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hhhH
Confidence 344556666666543 55667777777777766666777888899999999999999999999999999999875 6677
Q ss_pred HHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015496 210 KQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 287 (405)
Q Consensus 210 ~~vle~G~lp~Ll~LL~s~--~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L 287 (405)
..+-. .++.+++...+. +.+++..++.+|.++.-.+ ..+..+. +.++.+..+|.++ +.++|..++.+|.||
T Consensus 89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~~~~l~--~~i~~ll~LL~~G--~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DYHHMLA--NYIPDLLSLLSSG--SEKTKVQVLKVLVNL 161 (254)
T ss_pred HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-chhhhHH--hhHHHHHHHHHcC--ChHHHHHHHHHHHHh
Confidence 76543 588888866554 3578889999999997553 3344443 5789999999987 567899999999999
Q ss_pred hhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChHHHHHHHHHHHHHhcC
Q 015496 288 AKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQL 337 (405)
Q Consensus 288 ~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~-D~~v~E~al~aL~~L~~~ 337 (405)
+. ++.....+...+++..++.++... +.++...++..+.+|..+
T Consensus 162 S~------np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 162 SE------NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred cc------CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 84 567777888889999999999886 788888999999999654
No 19
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.00 E-value=6.2e-08 Score=105.25 Aligned_cols=202 Identities=20% Similarity=0.177 Sum_probs=150.6
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015496 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (405)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL 225 (405)
+.+-...++.-|..|.-..+|.+.+.+.|.+++|++++.+++.+++..|.++|.|++.+ +..+..+++.|.+|+|+.+|
T Consensus 303 n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL 381 (708)
T PF05804_consen 303 NEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELL 381 (708)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHh
Confidence 45677778888888888889999999999999999999999999999999999999975 77899999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh
Q 015496 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (405)
Q Consensus 226 ~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~ 305 (405)
.+++ .+.-++..|.++.. .+.++..|...+.++.|++++-+. .+.++...++.++.||+.++ ...+.+.+
T Consensus 382 ~d~~--~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~Ll~~-~~~~v~~eliaL~iNLa~~~------rnaqlm~~ 451 (708)
T PF05804_consen 382 KDPN--FREVALKILYNLSM-DDEARSMFAYTDCIPQLMQMLLEN-SEEEVQLELIALLINLALNK------RNAQLMCE 451 (708)
T ss_pred CCCc--hHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHHHhC-CCccccHHHHHHHHHHhcCH------HHHHHHHh
Confidence 8754 33345555556555 456788998889999999987654 24556777889999987542 11112222
Q ss_pred C-------------------------------------CcHHHHHHhccCC-ChHHHHHHHHHHHHHhcCChhhHHHHHh
Q 015496 306 R-------------------------------------FFLKSVVDLTASA-DLDLQEKALAAIKNLLQLRTTEALVLKD 347 (405)
Q Consensus 306 ~-------------------------------------g~l~~Lv~LL~~~-D~~v~E~al~aL~~L~~~~~~~~~~v~~ 347 (405)
. +++..|+.++..+ +.++.-.++.+|.+|...+.+..+.+.
T Consensus 452 g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~- 530 (708)
T PF05804_consen 452 GNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQ- 530 (708)
T ss_pred cCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHH-
Confidence 2 2444555555543 667777788888888755444555665
Q ss_pred cCCchHHHHHHH
Q 015496 348 FCGLDTALERLR 359 (405)
Q Consensus 348 ~~Gl~~~L~~L~ 359 (405)
..++.|.+..+.
T Consensus 531 ~~~llp~L~~~L 542 (708)
T PF05804_consen 531 EYNLLPWLKDLL 542 (708)
T ss_pred hCCHHHHHHHHh
Confidence 777766666555
No 20
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=8e-08 Score=94.55 Aligned_cols=212 Identities=14% Similarity=0.116 Sum_probs=167.6
Q ss_pred HhhcCCCCHHHHHHHHHHHHHccCCC----------CchhHHHhcCCHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCChH
Q 015496 139 DLNNSTLSLEDSQRALQELLILVEPI----------DNANDLSKLGGLSVLVGQLNH-PDTDIRKISAWILGKASQNNPL 207 (405)
Q Consensus 139 ~L~~~~~t~e~k~~AL~~L~~Lve~i----------DnA~~~~~~Ggi~~Lv~lL~s-~~~~Ir~~Aa~~Lg~~aqNN~~ 207 (405)
+|+..+.+ +.-..+.+.+..|+-+- ..|+.|.+.||+..|+..|.. -+|++-..++-+|+.++-+|+.
T Consensus 197 ~l~~~gk~-~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~ 275 (461)
T KOG4199|consen 197 VLNREGKT-RTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEI 275 (461)
T ss_pred HHcccCcc-HHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHH
Confidence 44555544 33345566777766443 458999999999999999974 5799999999999999998877
Q ss_pred hHHHHHHcCcHHHHHHhhcCCC-HHHH---HHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHH
Q 015496 208 VQKQVLELGALSKLMKMVKSSF-VEEA---VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSL 283 (405)
Q Consensus 208 ~Q~~vle~G~lp~Ll~LL~s~~-~~v~---~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~l 283 (405)
+|. |.+.||+..|++++.+.+ ...| +.++.-|+.+++ +....+.+++.||.+.|+.++-...+++.+-..++.+
T Consensus 276 C~~-I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~ 353 (461)
T KOG4199|consen 276 CKS-IAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAI 353 (461)
T ss_pred HHH-HHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHH
Confidence 665 789999999999998855 3444 567777887764 5678899999999999999987655678889999999
Q ss_pred HHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC-C-ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHH
Q 015496 284 VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS-A-DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 359 (405)
Q Consensus 284 Ls~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~-~-D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~ 359 (405)
++-||-. .|+....+++.|.-...++-++. + ...+|..+++++.+++..+.+++..+. +.|+..++..=+
T Consensus 354 i~~l~LR-----~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l-~~GiE~Li~~A~ 425 (461)
T KOG4199|consen 354 ISILCLR-----SPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILL-ANGIEKLIRTAK 425 (461)
T ss_pred HHHHHhc-----CcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHH-hccHHHHHHHHH
Confidence 9999953 46677788899988888888764 3 678999999999999998888888887 788866554444
No 21
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.95 E-value=1.1e-07 Score=100.44 Aligned_cols=194 Identities=18% Similarity=0.152 Sum_probs=158.2
Q ss_pred HHHHHHHHHcCCCC-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCc-hhHHHhcCCHHHHHHhcCCCCHHHHH
Q 015496 115 MEIKELMEKLKTPS-DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN-ANDLSKLGGLSVLVGQLNHPDTDIRK 192 (405)
Q Consensus 115 ~~L~~a~~~~~~~~-d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDn-A~~~~~~Ggi~~Lv~lL~s~~~~Ir~ 192 (405)
+-|+..++.+...+ ..+.+.....-|.++ ++..|..++..+..+++..+. +.-+.+.+.++.++.+|.+++.++..
T Consensus 60 ~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~--~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~ 137 (503)
T PF10508_consen 60 DILKRLLSALSPDSLLPQYQPFLQRGLTHP--SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAK 137 (503)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHH
Confidence 44555555433222 234444455555654 467888889999998877765 44566678899999999999999999
Q ss_pred HHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCc
Q 015496 193 ISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSF 272 (405)
Q Consensus 193 ~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~ 272 (405)
.|+.+|..++.+.+ ..+.+++.+.++.|..++..+++.+|.+++..+..+.+.++...+...+.|.++.++..|+++
T Consensus 138 ~A~~~L~~l~~~~~-~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d-- 214 (503)
T PF10508_consen 138 AAIKALKKLASHPE-GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD-- 214 (503)
T ss_pred HHHHHHHHHhCCch-hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc--
Confidence 99999999998655 445688888999999999887888899999999999999999999999999999999999985
Q ss_pred cHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC
Q 015496 273 EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA 319 (405)
Q Consensus 273 ~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~ 319 (405)
|+-+|..++-+++.|+. .+.....+.+.|+++.|++++...
T Consensus 215 DiLvqlnalell~~La~------~~~g~~yL~~~gi~~~L~~~l~~~ 255 (503)
T PF10508_consen 215 DILVQLNALELLSELAE------TPHGLQYLEQQGIFDKLSNLLQDS 255 (503)
T ss_pred cHHHHHHHHHHHHHHHc------ChhHHHHHHhCCHHHHHHHHHhcc
Confidence 88899999999999995 345577889999999999999765
No 22
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.89 E-value=7.7e-08 Score=95.54 Aligned_cols=206 Identities=21% Similarity=0.263 Sum_probs=150.8
Q ss_pred CHHHHHHHHHHHHHccCC-CCchhHHHhcC------CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcH
Q 015496 146 SLEDSQRALQELLILVEP-IDNANDLSKLG------GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGAL 218 (405)
Q Consensus 146 t~e~k~~AL~~L~~Lve~-iDnA~~~~~~G------gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~l 218 (405)
..+-..-.+--+.+++.+ .....-|.... -+.++++++++++.-++..|+.+++.++...+....... .+.+
T Consensus 70 ~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l 148 (312)
T PF03224_consen 70 NDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEAL 148 (312)
T ss_dssp -HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHH
Confidence 445555666667776644 45666666632 589999999999999999999999999987665555433 5678
Q ss_pred HHHHHhhcCCC----HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhh-----cCCCccHHHHHHHHHHHHHHhh
Q 015496 219 SKLMKMVKSSF----VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL-----GNSSFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 219 p~Ll~LL~s~~----~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL-----~s~~~~~kl~~kA~~lLs~L~~ 289 (405)
+.+++.+++.. .+++.-++.+|++++| .+..+..|.+.||++.|..++ .+++....++-.+++++--|..
T Consensus 149 ~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF 227 (312)
T PF03224_consen 149 PKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSF 227 (312)
T ss_dssp HHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc
Confidence 99998887632 3456889999999997 578899999999999999999 3334577888999999998875
Q ss_pred chhccCCCCcchhHHhCCcHHHHHHhccCC-ChHHHHHHHHHHHHHhcCChh-hHHHHHhcCCchHHHHHHHH
Q 015496 290 CQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLRTT-EALVLKDFCGLDTALERLRQ 360 (405)
Q Consensus 290 ~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~-D~~v~E~al~aL~~L~~~~~~-~~~~v~~~~Gl~~~L~~L~~ 360 (405)
+++..+.+.+.++++.|+++++.. ...+..-++.++.||+..+.+ +...+. .+|+.+.+..|..
T Consensus 228 ------~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv-~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 228 ------EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMV-LCGLLKTLQNLSE 293 (312)
T ss_dssp ------SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHH-HH-HHHHHHHHHS
T ss_pred ------CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHH-HccHHHHHHHHhc
Confidence 456677788889999999999764 678888999999999987664 455555 6888888888763
No 23
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=8.4e-08 Score=103.11 Aligned_cols=208 Identities=15% Similarity=0.151 Sum_probs=161.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccC--CCCchhHHHhcCCHHHHHHhcCC-CCHHHHHHHHHHHHHHhc
Q 015496 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVE--PIDNANDLSKLGGLSVLVGQLNH-PDTDIRKISAWILGKASQ 203 (405)
Q Consensus 127 ~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve--~iDnA~~~~~~Ggi~~Lv~lL~s-~~~~Ir~~Aa~~Lg~~aq 203 (405)
.+.--.||+++.-+.+.+ ++-.++.|+-+|.+++- +.|.-.-|--.-.+|.|+.+|++ .+.+|.-.||++|++++-
T Consensus 163 ~sasSk~kkLL~gL~~~~-Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~e 241 (1051)
T KOG0168|consen 163 SSASSKAKKLLQGLQAES-DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCE 241 (1051)
T ss_pred ccchHHHHHHHHhccccC-ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh
Confidence 344568999999998875 66677777666665432 11211122222357889999986 579999999999999999
Q ss_pred CChHhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015496 204 NNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 282 (405)
Q Consensus 204 NN~~~Q~~vle~G~lp~Ll~LL~s-~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~ 282 (405)
--|..-..++++++||.|+.-|.. .-..+.++++.||=-|-|.++. +.+++||+...+.+|.=- ..-.||+|+.
T Consensus 242 vlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~LsylDFF--Si~aQR~Ala 316 (1051)
T KOG0168|consen 242 VLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYLDFF--SIHAQRVALA 316 (1051)
T ss_pred hccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHHHHH--HHHHHHHHHH
Confidence 999999999999999999965544 5578999999999999998876 578899999988887632 3557999999
Q ss_pred HHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 015496 283 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLK 346 (405)
Q Consensus 283 lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~ 346 (405)
...|.|.+ ..++....+.+ .+|.|..+|...|..+.|.++.++..++..-....+.+.
T Consensus 317 iaaN~Cks----i~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLd 374 (1051)
T KOG0168|consen 317 IAANCCKS----IRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLD 374 (1051)
T ss_pred HHHHHHhc----CCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHH
Confidence 99999974 45555556654 899999999999999999999999999865433334443
No 24
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.81 E-value=6.2e-08 Score=101.92 Aligned_cols=177 Identities=14% Similarity=0.103 Sum_probs=137.5
Q ss_pred CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 015496 164 IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 243 (405)
Q Consensus 164 iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~l 243 (405)
++++..+-..-....+.......+...+..|+-++-+++..-...+.-+-...+..+|++++..++..+...++.||+|+
T Consensus 367 i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~Nl 446 (678)
T KOG1293|consen 367 ISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNL 446 (678)
T ss_pred hhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHH
Confidence 66776666543333333444567888998999888888765443333333446889999999888888999999999999
Q ss_pred hcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHH
Q 015496 244 IRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDL 323 (405)
Q Consensus 244 ir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v 323 (405)
+=.+.+-+..|+..||++.|...+.+. +..+|.++.|+++++..+ .++..+..+...-.-+.++.+.+.+|..|
T Consensus 447 Vmefs~~kskfl~~ngId~l~s~~~~~--~~n~r~~~~~~Lr~l~f~----~de~~k~~~~~ki~a~~i~~l~nd~d~~V 520 (678)
T KOG1293|consen 447 VMEFSNLKSKFLRNNGIDILESMLTDP--DFNSRANSLWVLRHLMFN----CDEEEKFQLLAKIPANLILDLINDPDWAV 520 (678)
T ss_pred HhhcccHHHHHHHcCcHHHHHHHhcCC--CchHHHHHHHHHHHHHhc----chHHHHHHHHHHhhHHHHHHHHhCCCHHH
Confidence 999999999999999999999999986 677899999999999874 44444444444455666788888999999
Q ss_pred HHHHHHHHHHHhcCChhhHHHHH
Q 015496 324 QEKALAAIKNLLQLRTTEALVLK 346 (405)
Q Consensus 324 ~E~al~aL~~L~~~~~~~~~~v~ 346 (405)
||.++..|.+|+.+..+..+.+-
T Consensus 521 qeq~fqllRNl~c~~~~svdfll 543 (678)
T KOG1293|consen 521 QEQCFQLLRNLTCNSRKSVDFLL 543 (678)
T ss_pred HHHHHHHHHHhhcCcHHHHHHHH
Confidence 99999999999988655555443
No 25
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=98.68 E-value=2e-07 Score=100.06 Aligned_cols=174 Identities=16% Similarity=0.148 Sum_probs=139.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh--hHHH
Q 015496 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA--GQEM 253 (405)
Q Consensus 176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~--~~~~ 253 (405)
+|..+.+|.+.++.+|..|+.-+-.++-.+.+++..+.+.|+|+.|+.+|.+...+++..|++||-|++-+... ..-+
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKla 314 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLA 314 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchh
Confidence 67788999999999999999999999999999999999999999999999999999999999999999988666 7777
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhcc--------------CC
Q 015496 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA--------------SA 319 (405)
Q Consensus 254 f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~--------------~~ 319 (405)
+.++||++.|+.+|+.. .|..++..+..++-||.++ ...+..++. ..+..|.+-+- ..
T Consensus 315 i~~~~Gv~~l~~~Lr~t-~D~ev~e~iTg~LWNLSS~------D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~ 386 (717)
T KOG1048|consen 315 IKELNGVPTLVRLLRHT-QDDEVRELITGILWNLSSN------DALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAE 386 (717)
T ss_pred hhhcCChHHHHHHHHhh-cchHHHHHHHHHHhcccch------hHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccc
Confidence 88999999999999964 2566899999999999752 222222222 22333332211 11
Q ss_pred ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHH
Q 015496 320 DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALER 357 (405)
Q Consensus 320 D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~ 357 (405)
+.++--.+..+|.++++.+.+.|+.++...|+-..|.-
T Consensus 387 ~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~ 424 (717)
T KOG1048|consen 387 DSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLF 424 (717)
T ss_pred cceeeehhhhhhccccchhHHHHHHHhhccchHHHHHH
Confidence 35677789999999999888899999977776444333
No 26
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.48 E-value=5.9e-05 Score=77.97 Aligned_cols=221 Identities=15% Similarity=0.109 Sum_probs=153.2
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCC-CCchhHHHhc-----CCHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 015496 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNANDLSKL-----GGLSVLVGQLNHPDTDIRKISAWILGKASQ 203 (405)
Q Consensus 130 ~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~-iDnA~~~~~~-----Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aq 203 (405)
....+-.+..+.+.+ ..+-..-.|--+.+++.. ...+.-|++. .-+.+++.+|++++.-|...|+.+|+.+++
T Consensus 52 ~~y~~~~l~ll~~~~-~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~ 130 (429)
T cd00256 52 GQYVKTFVNLLSQID-KDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLAC 130 (429)
T ss_pred HHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHh
Confidence 455555666665533 344444455555555544 3345667664 468899999999999999999999999987
Q ss_pred CChHhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015496 204 NNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 282 (405)
Q Consensus 204 NN~~~Q~~vle~G~lp~Ll~LL~s~~-~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~ 282 (405)
-.+.........-.+.-|...+++.+ ...+.-++.+++.++|. +..+..|.+.+|++.|..+|+....+..++-.+++
T Consensus 131 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll 209 (429)
T cd00256 131 FGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIF 209 (429)
T ss_pred cCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHHHHHHH
Confidence 54432221111113345556666543 45566788999999986 56788999999999999999875335678888888
Q ss_pred HHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChHHHHHHHHHHHHHhcCCh------hhHHHHHhcCCchHHH
Q 015496 283 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLRT------TEALVLKDFCGLDTAL 355 (405)
Q Consensus 283 lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~-D~~v~E~al~aL~~L~~~~~------~~~~~v~~~~Gl~~~L 355 (405)
++--|..+ ++..+.+.+.++++.++++++.. -..+...++.++.||+..+. .....+. .+|+++.+
T Consensus 210 ~lWlLSF~------~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv-~~~l~~~l 282 (429)
T cd00256 210 CIWLLTFN------PHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMV-QCKVLKTL 282 (429)
T ss_pred HHHHHhcc------HHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHH-HcChHHHH
Confidence 88877753 23444566679999999999865 56677788889999997431 2333444 67888887
Q ss_pred HHHH
Q 015496 356 ERLR 359 (405)
Q Consensus 356 ~~L~ 359 (405)
..|.
T Consensus 283 ~~L~ 286 (429)
T cd00256 283 QSLE 286 (429)
T ss_pred HHHh
Confidence 7776
No 27
>PRK09687 putative lyase; Provisional
Probab=98.34 E-value=3e-05 Score=76.17 Aligned_cols=150 Identities=11% Similarity=0.071 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHh-cCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh
Q 015496 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQ-LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (405)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~l-L~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~L 224 (405)
++..|..|...|.++-..-. . ....++.|..+ ++.+++.||..|+.+||.+....+.-.. .+++.+...
T Consensus 67 d~~vR~~A~~aLg~lg~~~~-~----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~-----~a~~~l~~~ 136 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKR-C----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSP-----KIVEQSQIT 136 (280)
T ss_pred CHHHHHHHHHHHHhcCCCcc-c----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccch-----HHHHHHHHH
Confidence 56778888888887633211 0 11245666666 5678888898999888887543221111 133445555
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHH
Q 015496 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (405)
Q Consensus 225 L~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~ 304 (405)
+.+++..||..|++||+.+ + ++ ..++.|+.+|+++ +..+|..|++.|..+... +
T Consensus 137 ~~D~~~~VR~~a~~aLg~~-~-~~---------~ai~~L~~~L~d~--~~~VR~~A~~aLg~~~~~-----~-------- 190 (280)
T PRK09687 137 AFDKSTNVRFAVAFALSVI-N-DE---------AAIPLLINLLKDP--NGDVRNWAAFALNSNKYD-----N-------- 190 (280)
T ss_pred hhCCCHHHHHHHHHHHhcc-C-CH---------HHHHHHHHHhcCC--CHHHHHHHHHHHhcCCCC-----C--------
Confidence 5555566666666666544 1 11 1455666666654 334666666666655210 1
Q ss_pred hCCcHHHHHHhccCCChHHHHHHHHHHH
Q 015496 305 DRFFLKSVVDLTASADLDLQEKALAAIK 332 (405)
Q Consensus 305 ~~g~l~~Lv~LL~~~D~~v~E~al~aL~ 332 (405)
...++.|+.+|...|.+++..|.++|+
T Consensus 191 -~~~~~~L~~~L~D~~~~VR~~A~~aLg 217 (280)
T PRK09687 191 -PDIREAFVAMLQDKNEEIRIEAIIGLA 217 (280)
T ss_pred -HHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 123444555555555555555555554
No 28
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.33 E-value=1.2e-06 Score=60.63 Aligned_cols=41 Identities=22% Similarity=0.382 Sum_probs=38.7
Q ss_pred ChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 015496 205 NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIR 245 (405)
Q Consensus 205 N~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir 245 (405)
||+.++.+++.|++|+|+++|++++..++..|+|||+||++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 57889999999999999999999999999999999999975
No 29
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=4.9e-05 Score=81.89 Aligned_cols=223 Identities=21% Similarity=0.210 Sum_probs=168.8
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCC------c-----------hhHHHhc-CCHHHHHHhcCCCCHHHHH
Q 015496 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPID------N-----------ANDLSKL-GGLSVLVGQLNHPDTDIRK 192 (405)
Q Consensus 131 ~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iD------n-----------A~~~~~~-Ggi~~Lv~lL~s~~~~Ir~ 192 (405)
.-|+-.+.+|.+.-.++|-...+|+.+..++..-| + |..|++. +-|..|+.++...+-.||.
T Consensus 61 ~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~ 140 (970)
T KOG0946|consen 61 QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRL 140 (970)
T ss_pred cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhh
Confidence 34777888887776677777778888887775442 2 4556665 5577888999999999999
Q ss_pred HHHHHHHHHhcC-ChHhHHHHHHc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCC
Q 015496 193 ISAWILGKASQN-NPLVQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 270 (405)
Q Consensus 193 ~Aa~~Lg~~aqN-N~~~Q~~vle~-G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~ 270 (405)
.|...|.++..+ -+++|++++.. -+|..|+.+|.+..+.+|-.+++-|+.++|+++..++.+.=.|.+.-|..++...
T Consensus 141 ~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeE 220 (970)
T KOG0946|consen 141 YAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEE 220 (970)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhc
Confidence 999999998875 45788888876 6899999999998889999999999999999998888877789999999999643
Q ss_pred C--ccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC---C----------hHHHHHHHHHHHHHh
Q 015496 271 S--FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA---D----------LDLQEKALAAIKNLL 335 (405)
Q Consensus 271 ~--~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~---D----------~~v~E~al~aL~~L~ 335 (405)
. +.--+-..++.++.||..+ +.+....|.+.+++++|.++|..+ | +.-.-.++.++..|+
T Consensus 221 Gg~dGgIVveDCL~ll~NLLK~-----N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lV 295 (970)
T KOG0946|consen 221 GGLDGGIVVEDCLILLNNLLKN-----NISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLV 295 (970)
T ss_pred CCCCCcchHHHHHHHHHHHHhh-----CcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhc
Confidence 2 1223678899999999963 567778999999999999998753 3 122345677777777
Q ss_pred cCChh------hHHHHHhcCCchHHHHHHH
Q 015496 336 QLRTT------EALVLKDFCGLDTALERLR 359 (405)
Q Consensus 336 ~~~~~------~~~~v~~~~Gl~~~L~~L~ 359 (405)
.-+.. +.+++. .+++...|-.+.
T Consensus 296 sP~Nt~~~~~q~qk~l~-ss~ll~~Lc~il 324 (970)
T KOG0946|consen 296 SPGNTSSITHQNQKALV-SSHLLDVLCTIL 324 (970)
T ss_pred CCCCcHHHHHHHHHHHH-HcchHHHHHHHH
Confidence 64322 112333 566655554444
No 30
>PRK09687 putative lyase; Provisional
Probab=98.32 E-value=2.1e-05 Score=77.20 Aligned_cols=161 Identities=11% Similarity=-0.005 Sum_probs=117.5
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHH
Q 015496 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV 212 (405)
Q Consensus 133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~v 212 (405)
++..++.|.+. +...+..|...|..+=+ -..++.+..+++++++.+|..|+|+||.+.... ..+
T Consensus 25 ~~~L~~~L~d~--d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-~~~--- 88 (280)
T PRK09687 25 DDELFRLLDDH--NSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAK-RCQ--- 88 (280)
T ss_pred HHHHHHHHhCC--CHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cch---
Confidence 55566777665 45678888888875421 225778888899999999999999999985321 111
Q ss_pred HHcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhch
Q 015496 213 LELGALSKLMKM-VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 291 (405)
Q Consensus 213 le~G~lp~Ll~L-L~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~ 291 (405)
..+++.|..+ ++++++.||..|+.+||.+......... ..++.+...+.++ +..+|..++++|..+-
T Consensus 89 --~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~-----~a~~~l~~~~~D~--~~~VR~~a~~aLg~~~--- 156 (280)
T PRK09687 89 --DNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSP-----KIVEQSQITAFDK--STNVRFAVAFALSVIN--- 156 (280)
T ss_pred --HHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccch-----HHHHHHHHHhhCC--CHHHHHHHHHHHhccC---
Confidence 1356888877 5566788999999999998544321111 1345566777765 6779999999887653
Q ss_pred hccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHH
Q 015496 292 LENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334 (405)
Q Consensus 292 ~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L 334 (405)
+...++.|+.+|..+|.+++..|+.+|+.+
T Consensus 157 -------------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 157 -------------DEAAIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred -------------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 134788999999999999999999999987
No 31
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.28 E-value=8.8e-06 Score=82.61 Aligned_cols=190 Identities=15% Similarity=0.093 Sum_probs=138.8
Q ss_pred hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC----C---HHHHHHHHHHHHHHh
Q 015496 172 KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS----F---VEEAVKALYTVSSLI 244 (405)
Q Consensus 172 ~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~----~---~~v~~kAl~ALS~li 244 (405)
..|.+++|.+..+|++-++-.+.+++|||+|..|.+.+.+|.+.||-..+++.|++. . ++...-+..-|+|.+
T Consensus 85 ~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~ 164 (604)
T KOG4500|consen 85 DAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYI 164 (604)
T ss_pred HHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhh
Confidence 457788888888999999999999999999999999999999999988888877653 2 234556788899999
Q ss_pred cCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChHH
Q 015496 245 RNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDL 323 (405)
Q Consensus 245 r~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~-D~~v 323 (405)
-++...+.++.+.|.++.|...+.-+-.+..+..+..-...+|++-- .+...+...+..+...++++|.+. .+++
T Consensus 165 l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~----~e~~~~~~~d~sl~~~l~~ll~~~v~~d~ 240 (604)
T KOG4500|consen 165 LDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFV----CEMLYPFCKDCSLVFMLLQLLPSMVREDI 240 (604)
T ss_pred CCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHH----HHhhhhhhccchHHHHHHHHHHHhhccch
Confidence 99999999999999999999887644223333344333333333210 111223455677888889998765 8899
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHHHHHHhhh
Q 015496 324 QEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVML 367 (405)
Q Consensus 324 ~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~~~~l~~ 367 (405)
.|.....+...+..+.-+-. +. ..|+...+..|-++++....
T Consensus 241 ~eM~feila~~aend~Vkl~-la-~~gl~e~~~~lv~~~k~~t~ 282 (604)
T KOG4500|consen 241 DEMIFEILAKAAENDLVKLS-LA-QNGLLEDSIDLVRNMKDFTK 282 (604)
T ss_pred hhHHHHHHHHHhcCcceeee-hh-hcchHHHHHHHHHhcccccc
Confidence 99999999999986543333 33 45677666666666655443
No 32
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=98.19 E-value=1.9e-05 Score=85.07 Aligned_cols=116 Identities=15% Similarity=0.076 Sum_probs=104.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCC
Q 015496 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH 296 (405)
Q Consensus 217 ~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~ 296 (405)
-+|..+++|.+..+.++..|.+-|--++.++..+...+.+.|||+.|+.+|.+. ...+++.|++++.||...+ .+
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~--~~evq~~acgaLRNLvf~~---~~ 308 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHR--NDEVQRQACGALRNLVFGK---ST 308 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCC--cHHHHHHHHHHHHhhhccc---CC
Confidence 468889999998899999999999999999999999999999999999999987 5678999999999999763 44
Q ss_pred CCcchhHHhCCcHHHHHHhccC-CChHHHHHHHHHHHHHhcC
Q 015496 297 KVEPPLFRDRFFLKSVVDLTAS-ADLDLQEKALAAIKNLLQL 337 (405)
Q Consensus 297 ~~~~~~l~~~g~l~~Lv~LL~~-~D~~v~E~al~aL~~L~~~ 337 (405)
.+.+-.+.+.+.++.++.+|+. .|.+++|.+..+|++|.+.
T Consensus 309 ~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~ 350 (717)
T KOG1048|consen 309 DSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN 350 (717)
T ss_pred cccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch
Confidence 4567788899999999999997 5999999999999999986
No 33
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.10 E-value=5.5e-06 Score=60.77 Aligned_cols=55 Identities=18% Similarity=0.353 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 015496 188 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 243 (405)
Q Consensus 188 ~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~l 243 (405)
+.+|..|+|+||+++++.+...+.+ ....+|.|+.+|+++++.||..|+|||++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~-~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPY-LPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHH-HHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5789999999999999888777763 457999999999998899999999999975
No 34
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.10 E-value=0.00035 Score=78.98 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=20.3
Q ss_pred cHHHHHHhccCCChHHHHHHHHHHHHH
Q 015496 308 FLKSVVDLTASADLDLQEKALAAIKNL 334 (405)
Q Consensus 308 ~l~~Lv~LL~~~D~~v~E~al~aL~~L 334 (405)
.++.|+.+|..++.+||..|+++|..+
T Consensus 839 a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 839 AVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 456777777777888888888777775
No 35
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.06 E-value=1.4e-05 Score=63.54 Aligned_cols=87 Identities=21% Similarity=0.287 Sum_probs=69.4
Q ss_pred HHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 015496 176 LSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (405)
Q Consensus 176 i~~Lv~lL-~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f 254 (405)
++.|++.| +++++.+|..|+++||.+- ++ .++|.|+++++++++.+|..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG--DP---------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT--HH---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 58899988 8899999999999999543 12 45899999999989999999999999871
Q ss_pred HhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015496 255 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVG 285 (405)
Q Consensus 255 ~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs 285 (405)
....++.|..++.++. +..+|..|+..|+
T Consensus 60 -~~~~~~~L~~~l~~~~-~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDD-DEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-S-SHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCC-cHHHHHHHHhhcC
Confidence 2237889999998863 5556777777663
No 36
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.06 E-value=4.2e-05 Score=71.91 Aligned_cols=184 Identities=16% Similarity=0.158 Sum_probs=118.0
Q ss_pred hcCCCCHHHHHHHHHHHHHccCCC---CchhHHHhc--CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc
Q 015496 141 NNSTLSLEDSQRALQELLILVEPI---DNANDLSKL--GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 215 (405)
Q Consensus 141 ~~~~~t~e~k~~AL~~L~~Lve~i---DnA~~~~~~--Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~ 215 (405)
.+.+.+=+.+..|++.|..++... +....+... ..+..++..+++....|-..|+.+++.++..-...-+.+ -.
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~ 93 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-AD 93 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HH
T ss_pred cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HH
Confidence 445567789999999999988554 444444432 445677788888889999999999999998633332222 23
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccC
Q 015496 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (405)
Q Consensus 216 G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~ 295 (405)
..+|.|++.+.++...++..|..+|-.++.+.+.....+ ...+...+++. +..+|..++..+..++..
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~~K--n~~vR~~~~~~l~~~l~~----- 161 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL-----LEILSQGLKSK--NPQVREECAEWLAIILEK----- 161 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT-S---HHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHhCC--CHHHHHHHHHHHHHHHHH-----
Confidence 578999999999888899999999999998866211111 35556666665 678899999999988753
Q ss_pred CCCcchhHHh----CCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496 296 HKVEPPLFRD----RFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (405)
Q Consensus 296 ~~~~~~~l~~----~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~ 337 (405)
.+.....+.. ..+++.+..++...++++|+.|-.++..+.+.
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 162 WGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp -----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred ccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 1111122222 34788888999999999999999999998754
No 37
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=98.06 E-value=0.00023 Score=80.84 Aligned_cols=246 Identities=15% Similarity=0.140 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC---CCHHHHHHHHHHHHHHhcCCh-------------------
Q 015496 149 DSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH---PDTDIRKISAWILGKASQNNP------------------- 206 (405)
Q Consensus 149 ~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s---~~~~Ir~~Aa~~Lg~~aqNN~------------------- 206 (405)
+++.-...|.++..+.+..-.+...|.++.|+++|.- .+.+.|..|-.+|-||+.++|
T Consensus 210 D~ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIr 289 (2195)
T KOG2122|consen 210 DEEEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIR 289 (2195)
T ss_pred CHHHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHH
Confidence 4455555666666677777788889999999999964 356889999999999998855
Q ss_pred ----------------------------------------HhHHHHHHcCcHHHHHHhhcCC--------C----HHHHH
Q 015496 207 ----------------------------------------LVQKQVLELGALSKLMKMVKSS--------F----VEEAV 234 (405)
Q Consensus 207 ----------------------------------------~~Q~~vle~G~lp~Ll~LL~s~--------~----~~v~~ 234 (405)
+.+.++-+.|++..+-.|+.-+ . -.+|.
T Consensus 290 aYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRr 369 (2195)
T KOG2122|consen 290 AYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRR 369 (2195)
T ss_pred HHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 4445555556766666655422 1 24688
Q ss_pred HHHHHHHHHhcCChhhHHHHHhc-CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHH
Q 015496 235 KALYTVSSLIRNNLAGQEMFYVE-AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 313 (405)
Q Consensus 235 kAl~ALS~lir~~~~~~~~f~~~-gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv 313 (405)
.|..||-||.-+...+...++.. |-+..++..|.+. ...+..-.+.+|.||.= ..+...+..|.+.|-+..|+
T Consensus 370 Ya~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~--peeL~QV~AsvLRNLSW----RAD~nmKkvLrE~GsVtaLa 443 (2195)
T KOG2122|consen 370 YAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISA--PEELLQVYASVLRNLSW----RADSNMKKVLRETGSVTALA 443 (2195)
T ss_pred HHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcC--hHHHHHHHHHHHHhccc----cccccHHHHHHhhhhHHHHH
Confidence 89999999998887777777765 5578999999876 44577788999999974 35666777888999999998
Q ss_pred Hhc-cCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHH-------------------HHHHhh-hchhhh
Q 015496 314 DLT-ASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ-------------------QLQEVM-LEEDQR 372 (405)
Q Consensus 314 ~LL-~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~-------------------~~~~l~-~~~~q~ 372 (405)
.+- ..........+|.||+||..+..+.+..|-.-.|.+.+|+.++. ....++ +.++++
T Consensus 444 ~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yR 523 (2195)
T KOG2122|consen 444 ACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYR 523 (2195)
T ss_pred HHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHH
Confidence 874 44455677789999999998877766665445666666666651 112233 368899
Q ss_pred hhHHHHHHHHHHHHHHHhhhccccccchh
Q 015496 373 DYAMDVEALRREVELIFFRKLGKVGTRLC 401 (405)
Q Consensus 373 ~~~~d~~~l~~e~~~~~~~kl~~i~~~~~ 401 (405)
+...+-.-|-...+.+-..-| -|..-+|
T Consensus 524 QILR~~NCLq~LLQ~LKS~SL-TiVSNaC 551 (2195)
T KOG2122|consen 524 QILRRHNCLQTLLQHLKSHSL-TIVSNAC 551 (2195)
T ss_pred HHHHHhhHHHHHHHHhhhcce-EEeecch
Confidence 999888877777777777765 7788777
No 38
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.03 E-value=5e-06 Score=57.49 Aligned_cols=38 Identities=32% Similarity=0.691 Sum_probs=35.9
Q ss_pred CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 015496 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKAS 202 (405)
Q Consensus 165 DnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~a 202 (405)
++...+++.||+|+|+.+|+++++++|..|+|+|+|++
T Consensus 3 ~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 3 ENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 56778999999999999999999999999999999987
No 39
>PF05536 Neurochondrin: Neurochondrin
Probab=98.00 E-value=0.00074 Score=72.24 Aligned_cols=197 Identities=15% Similarity=0.140 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCc-hh---HHHhcCCHHHHHHhcCC-------CCHHHHHHHHHH
Q 015496 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN-AN---DLSKLGGLSVLVGQLNH-------PDTDIRKISAWI 197 (405)
Q Consensus 129 d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDn-A~---~~~~~Ggi~~Lv~lL~s-------~~~~Ir~~Aa~~ 197 (405)
..+.+++++..|+... .++|..+|--+..++.+-|. +. .+.+.=|..-+-++|++ +....+.-|..+
T Consensus 3 ~~~~l~~c~~lL~~~~--D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lavsv 80 (543)
T PF05536_consen 3 QSASLEKCLSLLKSAD--DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSV 80 (543)
T ss_pred chHHHHHHHHHhccCC--cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 3567889999998875 58899999999999987652 21 24455567777889986 457889999999
Q ss_pred HHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHH
Q 015496 198 LGKASQNNPLVQKQVLELGALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRL 276 (405)
Q Consensus 198 Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~-~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl 276 (405)
|+..++ .|+....--=-+-||.|++++.+.+. ++...++..|.+++ .++.+.+.|++.|+++.|.+++.+. ...
T Consensus 81 L~~f~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~~---~~~ 155 (543)
T PF05536_consen 81 LAAFCR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPNQ---SFQ 155 (543)
T ss_pred HHHHcC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHhC---cch
Confidence 999998 45554221112679999999988776 78888999999998 7899999999999999999999874 345
Q ss_pred HHHHHHHHHHHhhchhccCCCC----cchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015496 277 HRKAVSLVGDLAKCQLENMHKV----EPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (405)
Q Consensus 277 ~~kA~~lLs~L~~~~~~~~~~~----~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~ 338 (405)
+..|..++.+++... ..+ ....+ ..+++.+...........+-..+..|..+....
T Consensus 156 ~E~Al~lL~~Lls~~----~~~~~~~~~~~l--~~il~~La~~fs~~~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 156 MEIALNLLLNLLSRL----GQKSWAEDSQLL--HSILPSLARDFSSFHGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred HHHHHHHHHHHHHhc----chhhhhhhHHHH--HHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence 788999999998631 111 11111 145555666665554455556677777777654
No 40
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.00023 Score=79.54 Aligned_cols=155 Identities=15% Similarity=0.103 Sum_probs=119.8
Q ss_pred HHHHH----HhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhH
Q 015496 176 LSVLV----GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ 251 (405)
Q Consensus 176 i~~Lv----~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~ 251 (405)
+|+++ .+|.|++..-|..|..+|+.++-+-+++-...+ -..++..+..|+++++.||-.|+.|||-+..+..+-.
T Consensus 346 ~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~i 424 (1075)
T KOG2171|consen 346 LPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEI 424 (1075)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHH
Confidence 55555 466799999999999999999999665554433 2567777888899999999999999999999998888
Q ss_pred HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHH-HHHHhccCCChHHHHHHHHH
Q 015496 252 EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK-SVVDLTASADLDLQEKALAA 330 (405)
Q Consensus 252 ~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~-~Lv~LL~~~D~~v~E~al~a 330 (405)
+.....-.++.|+..+.+. ..++++..|+.++-|+... ..++...... .+++. .+-.++.++...++|.++.+
T Consensus 425 qk~~~e~l~~aL~~~ld~~-~~~rV~ahAa~al~nf~E~----~~~~~l~pYL-d~lm~~~l~~L~~~~~~~v~e~vvta 498 (1075)
T KOG2171|consen 425 QKKHHERLPPALIALLDST-QNVRVQAHAAAALVNFSEE----CDKSILEPYL-DGLMEKKLLLLLQSSKPYVQEQAVTA 498 (1075)
T ss_pred HHHHHHhccHHHHHHhccc-CchHHHHHHHHHHHHHHHh----CcHHHHHHHH-HHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 8888777888999999887 4789999999999998753 2222221111 14444 34445677899999999999
Q ss_pred HHHHhcC
Q 015496 331 IKNLLQL 337 (405)
Q Consensus 331 L~~L~~~ 337 (405)
|.+.+..
T Consensus 499 IasvA~A 505 (1075)
T KOG2171|consen 499 IASVADA 505 (1075)
T ss_pred HHHHHHH
Confidence 9999864
No 41
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=97.99 E-value=0.00012 Score=70.84 Aligned_cols=103 Identities=13% Similarity=0.096 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHH
Q 015496 187 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQD 265 (405)
Q Consensus 187 ~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s-~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~ 265 (405)
+..+...|..+|--++-.+|.+|..+.+..++..|+.+|.. ..+.++..++.+|.++..++|+++..|-+.||+..+..
T Consensus 104 ~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ 183 (257)
T PF08045_consen 104 NDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCS 183 (257)
T ss_pred hhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHH
Confidence 45567789999999999999999999999999999999954 45788999999999999999999999999999999999
Q ss_pred hhcCCCccHHHHHHHHHHHHHHhh
Q 015496 266 ILGNSSFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 266 lL~s~~~~~kl~~kA~~lLs~L~~ 289 (405)
++++.+.+..++.|.+-++.-.+.
T Consensus 184 llk~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 184 LLKSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred HHccccccHHHhHHHHHHHHHHHc
Confidence 999887788888887766665554
No 42
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.00082 Score=73.22 Aligned_cols=212 Identities=14% Similarity=0.084 Sum_probs=165.2
Q ss_pred hcCCCCHHHHHHHHHHHHHccCCC-CchhHHHhcCCHHHHHH-hcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcH
Q 015496 141 NNSTLSLEDSQRALQELLILVEPI-DNANDLSKLGGLSVLVG-QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGAL 218 (405)
Q Consensus 141 ~~~~~t~e~k~~AL~~L~~Lve~i-DnA~~~~~~Ggi~~Lv~-lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~l 218 (405)
-+.+...|-...|...|.+|+|-. ....-++..+.||.|+. ++.-..-++-+++..+|-.+.+..| .++++.|+|
T Consensus 220 L~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l 296 (1051)
T KOG0168|consen 220 LSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGAL 296 (1051)
T ss_pred HhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccH
Confidence 344556788889999999999875 44556778899999986 5567899999999999999998766 578999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCC
Q 015496 219 SKLMKMVKSSFVEEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 297 (405)
Q Consensus 219 p~Ll~LL~s~~~~v~~kAl~ALS~lir~~-~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~ 297 (405)
...+..|.--+..++.+|+...+|+|..- +.....|. ..+|.|..+|+.. +.+....++-++..++.+. .+.+
T Consensus 297 ~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~--ealPlL~~lLs~~--D~k~ies~~ic~~ri~d~f--~h~~ 370 (1051)
T KOG0168|consen 297 SAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVM--EALPLLTPLLSYQ--DKKPIESVCICLTRIADGF--QHGP 370 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHH--HHHHHHHHHHhhc--cchhHHHHHHHHHHHHHhc--ccCh
Confidence 99999997767788999999999999884 44444443 5789999999875 5667788888888887543 3567
Q ss_pred CcchhHHhCCcHHHHHHhccCCC----hHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHHHH
Q 015496 298 VEPPLFRDRFFLKSVVDLTASAD----LDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQL 362 (405)
Q Consensus 298 ~~~~~l~~~g~l~~Lv~LL~~~D----~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~~ 362 (405)
+..+.+...|++.....||...+ ..+-.-..+.|..++++......... ..+|...|..+..+|
T Consensus 371 ~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~-k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 371 DKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLL-KLDIADTLKRILQGY 438 (1051)
T ss_pred HHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHH-HhhHHHHHHHHHhcc
Confidence 77888899999999999987653 34555667777888877555444443 578888888888777
No 43
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=97.97 E-value=0.00015 Score=82.22 Aligned_cols=201 Identities=17% Similarity=0.121 Sum_probs=150.3
Q ss_pred HHHHHHHHcc-CCCCchhHHHhc-CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHH-HcCcHHHHHHhhc-C
Q 015496 152 RALQELLILV-EPIDNANDLSKL-GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVL-ELGALSKLMKMVK-S 227 (405)
Q Consensus 152 ~AL~~L~~Lv-e~iDnA~~~~~~-Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vl-e~G~lp~Ll~LL~-s 227 (405)
-|+-.|-+|. -++.|...++.. |.+..+|..|.+..++|..-.+.+|.|+.=+-...-+.++ +.|-+..|....- .
T Consensus 370 Ya~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~ 449 (2195)
T KOG2122|consen 370 YAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRN 449 (2195)
T ss_pred HHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHh
Confidence 3445555555 466777778877 5578999999999999999999999999876555555555 6688888887653 3
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhHHHHHhc-CcHHHHHHhhcCC--CccHHHHHHHHHHHHHHhhchhccCCCCcchhHH
Q 015496 228 SFVEEAVKALYTVSSLIRNNLAGQEMFYVE-AGDLMLQDILGNS--SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (405)
Q Consensus 228 ~~~~v~~kAl~ALS~lir~~~~~~~~f~~~-gGi~~L~~lL~s~--~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~ 304 (405)
..+..-+..|.||=||..|+..+...|+.. |.+.+|+..|... ....++...+-..|.|....- ...+.+++.++
T Consensus 450 ~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~I--At~E~yRQILR 527 (2195)
T KOG2122|consen 450 KKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLI--ATCEDYRQILR 527 (2195)
T ss_pred cccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHh--hccchHHHHHH
Confidence 333444445666667777888888899885 6789999999754 234566667777777765432 34567889999
Q ss_pred hCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHH
Q 015496 305 DRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTAL 355 (405)
Q Consensus 305 ~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L 355 (405)
++.++..|+.+|++....+.-.+|.+|+||..-+....+.+. +-|..+.|
T Consensus 528 ~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~Lw-D~gAv~mL 577 (2195)
T KOG2122|consen 528 RHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLW-DDGAVPML 577 (2195)
T ss_pred HhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHH-hcccHHHH
Confidence 999999999999999999999999999999987777777777 55553333
No 44
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=97.94 E-value=0.00035 Score=71.30 Aligned_cols=231 Identities=14% Similarity=0.000 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC-C-------CHHHHHHHHHHHHHHhcCChHhHHHHHHcC-cH
Q 015496 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH-P-------DTDIRKISAWILGKASQNNPLVQKQVLELG-AL 218 (405)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s-~-------~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G-~l 218 (405)
+-.+-.++.|....|+-.-.-.|.+.|.+..++.+++. + .-.+-..++..+.-+..+.+..|.. ...+ .+
T Consensus 239 d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L-~~~p~~l 317 (604)
T KOG4500|consen 239 DIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKL-HADPQFL 317 (604)
T ss_pred chhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHH-hcCcHHH
Confidence 34455688888888887777788889999999988864 2 2334566777777777776655554 4444 89
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcC---CCccHHHHHHHHHHHHHHhhchhccC
Q 015496 219 SKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN---SSFEIRLHRKAVSLVGDLAKCQLENM 295 (405)
Q Consensus 219 p~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s---~~~~~kl~~kA~~lLs~L~~~~~~~~ 295 (405)
..+++.+.|++.........||+|++|.... .-.|++.|-+..|+.+|.. ...+++++.-++.++.||+-
T Consensus 318 ~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~-ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I------ 390 (604)
T KOG4500|consen 318 DFLESWFRSDDSNLITMGSLAIGNFARRDDI-CIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI------ 390 (604)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhhhccchH-HHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc------
Confidence 9999999999988899999999999998655 4557888999999999854 23578899999999999984
Q ss_pred CCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHHHHHHhhhchhhhhhH
Q 015496 296 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYA 375 (405)
Q Consensus 296 ~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~~~~l~~~~~q~~~~ 375 (405)
+...+..+...|+++.+...|+...+.++-+-+..+.-+....+...... +-=+.++++|..= +. -.+|+
T Consensus 391 Pv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL---~kn~~l~ekLv~W------sk-s~D~a 460 (604)
T KOG4500|consen 391 PVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACEL---AKNPELFEKLVDW------SK-SPDFA 460 (604)
T ss_pred cCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHH---hcCHHHHHHHHHh------hh-CCccc
Confidence 44566788899999999999999999999888888777765422111111 1112233333211 22 34455
Q ss_pred -HHHHHHHHHHHHHHhhhcccc
Q 015496 376 -MDVEALRREVELIFFRKLGKV 396 (405)
Q Consensus 376 -~d~~~l~~e~~~~~~~kl~~i 396 (405)
.--|..|-..-++.|+|+..|
T Consensus 461 Gv~gESnRll~~lIkHs~~kdv 482 (604)
T KOG4500|consen 461 GVAGESNRLLLGLIKHSKYKDV 482 (604)
T ss_pred hhhhhhhHHHHHHHHhhHhhhh
Confidence 346777888888888886444
No 45
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.00077 Score=72.95 Aligned_cols=221 Identities=19% Similarity=0.193 Sum_probs=166.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcC--CCCHHHHHHHHHHHHHHhcC
Q 015496 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN--HPDTDIRKISAWILGKASQN 204 (405)
Q Consensus 127 ~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~--s~~~~Ir~~Aa~~Lg~~aqN 204 (405)
++.++.+....+.+.++. =.|+|..|+..|--+.... +.-+-.-|+++||.-|. ..++++-..|..++.++..+
T Consensus 18 ~s~aETI~kLcDRvessT-L~eDRR~A~rgLKa~srkY---R~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~ 93 (970)
T KOG0946|consen 18 QSAAETIEKLCDRVESST-LLEDRRDAVRGLKAFSRKY---REEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSH 93 (970)
T ss_pred ccHHhHHHHHHHHHhhcc-chhhHHHHHHHHHHHHHHH---HHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhc
Confidence 355667777777777653 3577777766666553332 23455678999999996 47899999999999999987
Q ss_pred Ch--------H--------hHHHHHH-cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh-hHHHHHh-cCcHHHHHH
Q 015496 205 NP--------L--------VQKQVLE-LGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYV-EAGDLMLQD 265 (405)
Q Consensus 205 N~--------~--------~Q~~vle-~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~-~~~~f~~-~gGi~~L~~ 265 (405)
.+ . ..+.+++ .+-|..|+..+...+-.||..++--|++++++-|. .++.++. .-|+.-|+.
T Consensus 94 dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmd 173 (970)
T KOG0946|consen 94 DDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMD 173 (970)
T ss_pred CcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHH
Confidence 52 2 2344443 37888899999887778999999999999998654 5666655 469999999
Q ss_pred hhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC---C-hHHHHHHHHHHHHHhcCChhh
Q 015496 266 ILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA---D-LDLQEKALAAIKNLLQLRTTE 341 (405)
Q Consensus 266 lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~---D-~~v~E~al~aL~~L~~~~~~~ 341 (405)
+|.+.. .-+|-.++.+|..|.. .++.....+.=.+....|.+++... | --|.+.++..|.+|+......
T Consensus 174 lL~Dsr--E~IRNe~iLlL~eL~k-----~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SN 246 (970)
T KOG0946|consen 174 LLRDSR--EPIRNEAILLLSELVK-----DNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISN 246 (970)
T ss_pred HHhhhh--hhhchhHHHHHHHHHc-----cCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcch
Confidence 999863 3479999999999985 4555555555567778888888653 3 257899999999999987778
Q ss_pred HHHHHhcCCchHHHHHHH
Q 015496 342 ALVLKDFCGLDTALERLR 359 (405)
Q Consensus 342 ~~~v~~~~Gl~~~L~~L~ 359 (405)
.+.|+ ++|.-|+|.+|.
T Consensus 247 Q~~Fr-E~~~i~rL~klL 263 (970)
T KOG0946|consen 247 QNFFR-EGSYIPRLLKLL 263 (970)
T ss_pred hhHHh-ccccHHHHHhhc
Confidence 88898 888878877666
No 46
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.85 E-value=0.00051 Score=68.26 Aligned_cols=185 Identities=18% Similarity=0.130 Sum_probs=124.9
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC----CCHHHHHHHHHHHHHHhcCChHhH
Q 015496 134 QIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH----PDTDIRKISAWILGKASQNNPLVQ 209 (405)
Q Consensus 134 k~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s----~~~~Ir~~Aa~~Lg~~aqNN~~~Q 209 (405)
...+..+.++ +.--...|+..|..++..-+....-...+.++.+++.|.+ ++.+++..|+.+++++.. ++..+
T Consensus 108 ~~fl~ll~~~--D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R 184 (312)
T PF03224_consen 108 SPFLKLLDRN--DSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYR 184 (312)
T ss_dssp HHHHHH-S-S--SHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHH
T ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhH
Confidence 3344444443 3445566777788776554433333224556777777653 567788999999999996 58899
Q ss_pred HHHHHcCcHHHHHHhh-----cCCC--HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015496 210 KQVLELGALSKLMKMV-----KSSF--VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 282 (405)
Q Consensus 210 ~~vle~G~lp~Ll~LL-----~s~~--~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~ 282 (405)
..|.+.|+++.|..++ .+.. ..+...+++++=.+.. ++.....+.+.+-++.|..+++.. ...|+-|-++.
T Consensus 185 ~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~-~KEKvvRv~la 262 (312)
T PF03224_consen 185 QVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDS-IKEKVVRVSLA 262 (312)
T ss_dssp HHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH---SHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhc-ccchHHHHHHH
Confidence 9999999999999999 2222 2455666666665544 577788888889999999999876 36799999999
Q ss_pred HHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC--CChHHHHHH
Q 015496 283 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS--ADLDLQEKA 327 (405)
Q Consensus 283 lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~--~D~~v~E~a 327 (405)
++.||+.. ........++..|+++.+-.+... .|.|+.+..
T Consensus 263 ~l~Nl~~~----~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl 305 (312)
T PF03224_consen 263 ILRNLLSK----APKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDL 305 (312)
T ss_dssp HHHHTTSS----SSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHH
T ss_pred HHHHHHhc----cHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHH
Confidence 99999852 333467777888888877766655 388887754
No 47
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.84 E-value=0.00075 Score=76.35 Aligned_cols=98 Identities=16% Similarity=0.141 Sum_probs=54.6
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc----------
Q 015496 134 QIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQ---------- 203 (405)
Q Consensus 134 k~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aq---------- 203 (405)
...++.|.++ ++..|..|++.|..+- .-+.++.|+..|+++++.+|..|+..|+.+..
T Consensus 624 ~~L~~~L~D~--d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~ 691 (897)
T PRK13800 624 AELAPYLADP--DPGVRRTAVAVLTETT----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRD 691 (897)
T ss_pred HHHHHHhcCC--CHHHHHHHHHHHhhhc----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHH
Confidence 3444555443 5667777777776542 12346666666766777777777666665532
Q ss_pred ----CChHhHHHHHHc------CcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 015496 204 ----NNPLVQKQVLEL------GALSKLMKMVKSSFVEEAVKALYTVSSL 243 (405)
Q Consensus 204 ----NN~~~Q~~vle~------G~lp~Ll~LL~s~~~~v~~kAl~ALS~l 243 (405)
.+|.++..+++. +....|++.|.+++..+|..|+++|+.+
T Consensus 692 ~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~ 741 (897)
T PRK13800 692 HLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSV 741 (897)
T ss_pred HhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 133333333321 2334556666666666666666666653
No 48
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.81 E-value=0.0001 Score=61.51 Aligned_cols=67 Identities=18% Similarity=0.194 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 015496 190 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNLAGQEMFYV 256 (405)
Q Consensus 190 Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~--~~~v~~kAl~ALS~lir~~~~~~~~f~~ 256 (405)
+|..-..+||+++.+|+.+|+.+.+.|+||.++..-.-+ ++-+++.|+|||-+++.+++++++.+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 466778899999999999999999999999999886544 4678999999999999999999887754
No 49
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.79 E-value=0.00043 Score=71.19 Aligned_cols=179 Identities=17% Similarity=0.139 Sum_probs=138.7
Q ss_pred HhcCCHHHHHHhcCCCC--HHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCC
Q 015496 171 SKLGGLSVLVGQLNHPD--TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNN 247 (405)
Q Consensus 171 ~~~Ggi~~Lv~lL~s~~--~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~-~~~v~~kAl~ALS~lir~~ 247 (405)
..-||+..|++++.+++ ..+|.+|+.+|-.+.. .+.++.|...| +..++-+.+.. ..+.+...+.-|.++-+|+
T Consensus 177 R~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHS 253 (832)
T KOG3678|consen 177 RLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHS 253 (832)
T ss_pred hccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhh
Confidence 34589999999998876 4569999999998875 45677887777 67777777543 3567778899999999999
Q ss_pred hhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHH
Q 015496 248 LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKA 327 (405)
Q Consensus 248 ~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~a 327 (405)
..-.+.++..||++.++.-.+.. ++.+.+.++.++.|.+-+ ...+....+++...-..|.-+-.+.|.-++-+|
T Consensus 254 eet~~~Lvaa~~lD~vl~~~rRt--~P~lLRH~ALAL~N~~L~----~~~a~qrrmveKr~~EWLF~LA~skDel~R~~A 327 (832)
T KOG3678|consen 254 EETCQRLVAAGGLDAVLYWCRRT--DPALLRHCALALGNCALH----GGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHA 327 (832)
T ss_pred HHHHHHHHhhcccchheeecccC--CHHHHHHHHHHhhhhhhh----chhHHHHHHHHhhhhhhhhhhhcchHHHHHHHH
Confidence 99999999999999888776654 677899999999998754 234455566676777777777777788889999
Q ss_pred HHHHHHHhcCChhhHHHHHhcCCchHHHHHHHH
Q 015496 328 LAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ 360 (405)
Q Consensus 328 l~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~ 360 (405)
+.|+..|+... +....++ .+|-..+++.|..
T Consensus 328 ClAV~vlat~K-E~E~~Vr-kS~TlaLVEPlva 358 (832)
T KOG3678|consen 328 CLAVAVLATNK-EVEREVR-KSGTLALVEPLVA 358 (832)
T ss_pred HHHHhhhhhhh-hhhHHHh-hccchhhhhhhhh
Confidence 99999999874 4445565 6777666666654
No 50
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.78 E-value=0.0017 Score=68.20 Aligned_cols=171 Identities=18% Similarity=0.183 Sum_probs=107.9
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015496 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (405)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL 225 (405)
+.+.|.-+.-.+..+.+.-. ++..+ .+..+.+-|+++++.+|..|.+++++++ +|+.-+.+ ++.+.+++
T Consensus 55 ~~~~Krl~yl~l~~~~~~~~---~~~~l-~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~l-----~~~v~~ll 123 (526)
T PF01602_consen 55 DLELKRLGYLYLSLYLHEDP---ELLIL-IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEPL-----IPDVIKLL 123 (526)
T ss_dssp SHHHHHHHHHHHHHHTTTSH---HHHHH-HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHHH-----HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhcch---hHHHH-HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhHH-----HHHHHHHh
Confidence 45566666555555543322 22222 4666667777888888888888888877 45555443 57778888
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh
Q 015496 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (405)
Q Consensus 226 ~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~ 305 (405)
.++++-||.+|+.|+..+.+.+|..... . -++.|..+|.++ ++.++..|+.++..+ . .++.... -.-
T Consensus 124 ~~~~~~VRk~A~~~l~~i~~~~p~~~~~---~-~~~~l~~lL~d~--~~~V~~~a~~~l~~i-~-----~~~~~~~-~~~ 190 (526)
T PF01602_consen 124 SDPSPYVRKKAALALLKIYRKDPDLVED---E-LIPKLKQLLSDK--DPSVVSAALSLLSEI-K-----CNDDSYK-SLI 190 (526)
T ss_dssp HSSSHHHHHHHHHHHHHHHHHCHCCHHG---G-HHHHHHHHTTHS--SHHHHHHHHHHHHHH-H-----CTHHHHT-THH
T ss_pred cCCchHHHHHHHHHHHHHhccCHHHHHH---H-HHHHHhhhccCC--cchhHHHHHHHHHHH-c-----cCcchhh-hhH
Confidence 8877888888888888888777765432 1 267788888654 567777787777777 2 1221111 111
Q ss_pred CCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChh
Q 015496 306 RFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTT 340 (405)
Q Consensus 306 ~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~ 340 (405)
..+++.|..++...++-.+..+++.+..+......
T Consensus 191 ~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~ 225 (526)
T PF01602_consen 191 PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPE 225 (526)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHH
T ss_pred HHHHHHhhhcccccchHHHHHHHHHHHhcccCChh
Confidence 24444455555677888888888888877765433
No 51
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.73 E-value=0.0013 Score=69.01 Aligned_cols=188 Identities=18% Similarity=0.182 Sum_probs=133.0
Q ss_pred CHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 015496 128 SDAQLIQIAIDDLNNS--TLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNN 205 (405)
Q Consensus 128 ~d~~lmk~al~~L~~~--~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN 205 (405)
.+.+.+.-++..+... +.++..+..||..+..+. ..+.+.. .++.+.++|.++++-||..|+-++..+.+.+
T Consensus 72 ~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-~~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~ 145 (526)
T PF01602_consen 72 EDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-TPEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKD 145 (526)
T ss_dssp TSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH--SHHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC
T ss_pred cchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-ccchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccC
Confidence 3455554455444331 235678888999999865 3344444 4778889999999999999999999999987
Q ss_pred hHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015496 206 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG 285 (405)
Q Consensus 206 ~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs 285 (405)
|..-. .. .++.+.+++.+.++.++..|+.++..+ +.++.....+ -..-+..|..++... ++-++.+++.++.
T Consensus 146 p~~~~---~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~-~~~~~~~L~~~l~~~--~~~~q~~il~~l~ 217 (526)
T PF01602_consen 146 PDLVE---DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSL-IPKLIRILCQLLSDP--DPWLQIKILRLLR 217 (526)
T ss_dssp HCCHH---GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTH-HHHHHHHHHHHHTCC--SHHHHHHHHHHHT
T ss_pred HHHHH---HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhh-HHHHHHHhhhccccc--chHHHHHHHHHHH
Confidence 76433 22 689999999888899999999999999 5555432211 123355555556554 9999999988888
Q ss_pred HHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496 286 DLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (405)
Q Consensus 286 ~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~ 337 (405)
.++. ..+ ..-....+++.+..++.+.+..+.-.+.+++..+...
T Consensus 218 ~~~~-----~~~---~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~ 261 (526)
T PF01602_consen 218 RYAP-----MEP---EDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS 261 (526)
T ss_dssp TSTS-----SSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred hccc-----CCh---hhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc
Confidence 7762 222 1111157899999999988888988888888887753
No 52
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.66 E-value=0.0024 Score=71.09 Aligned_cols=183 Identities=17% Similarity=0.150 Sum_probs=144.9
Q ss_pred HHHHHHHHHHccCCCCchhHHHh-cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC
Q 015496 150 SQRALQELLILVEPIDNANDLSK-LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS 228 (405)
Q Consensus 150 k~~AL~~L~~Lve~iDnA~~~~~-~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~ 228 (405)
|++||.-|..+++---.|-++.= .|.+|.++++|+++-.++|.-=+.+=+.|-.=.|.||...++.++-..+++.|.++
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~ 566 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS 566 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc
Confidence 56777777776554445665543 58999999999999999998888888888877899999999999999999999873
Q ss_pred -C--HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh
Q 015496 229 -F--VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (405)
Q Consensus 229 -~--~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~ 305 (405)
. ++-|..|.+-|+.+++|++-+|+...+.|-+.+-...|.++. ..-+|.=.+-+|.-|=.+ -+.. +=.=++
T Consensus 567 ~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~-~pLLrQW~~icLG~LW~d----~~~A-rw~G~r 640 (1387)
T KOG1517|consen 567 QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDP-EPLLRQWLCICLGRLWED----YDEA-RWSGRR 640 (1387)
T ss_pred CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCc-cHHHHHHHHHHHHHHhhh----cchh-hhcccc
Confidence 2 467899999999999999999999999998888888888752 455676677777776532 1211 111134
Q ss_pred CCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015496 306 RFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (405)
Q Consensus 306 ~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~ 338 (405)
.+....|..+|..+-++||..|..||+.++...
T Consensus 641 ~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 641 DNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred ccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 577788999999999999999999999999864
No 53
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.59 E-value=0.0076 Score=61.50 Aligned_cols=176 Identities=18% Similarity=0.163 Sum_probs=127.7
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhH---HHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChh
Q 015496 174 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ---KQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLA 249 (405)
Q Consensus 174 Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q---~~vle~G~lp~Ll~LL~s-~~~~v~~kAl~ALS~lir~~~~ 249 (405)
--|++.+++|...+.-+...++|+|+.++++-+..- +.-+..| .|-.++++ .+.....-|+.+|..++|. ++
T Consensus 114 ~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~---~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~e 189 (442)
T KOG2759|consen 114 TEWLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKG---FLKEQLQSSTNNDYIQFAARCLQTLLRV-DE 189 (442)
T ss_pred cchHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHH---HHHHHHhccCCCchHHHHHHHHHHHhcC-cc
Confidence 359999999999999999999999999998533211 1111122 23334444 3455677788899999985 67
Q ss_pred hHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChHHHHHHH
Q 015496 250 GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKAL 328 (405)
Q Consensus 250 ~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~-D~~v~E~al 328 (405)
-+..|+.++|+..|+..+.+.+.+..+|-..++++--|.. +|...+.+..-+.++.|+++++.. ...|..-++
T Consensus 190 yR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtF------n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivl 263 (442)
T KOG2759|consen 190 YRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTF------NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVL 263 (442)
T ss_pred hhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhc------CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999996555678899999999988875 345556666679999999999874 455666667
Q ss_pred HHHHHHhcCCh------hhHHHHHhcCCchHHHHHHHH
Q 015496 329 AAIKNLLQLRT------TEALVLKDFCGLDTALERLRQ 360 (405)
Q Consensus 329 ~aL~~L~~~~~------~~~~~v~~~~Gl~~~L~~L~~ 360 (405)
.++.++..-++ +....+. .+++++.+..|.+
T Consensus 264 ai~~Nll~k~~~~~~~k~~~~~mv-~~~v~k~l~~L~~ 300 (442)
T KOG2759|consen 264 AIFRNLLDKGPDRETKKDIASQMV-LCKVLKTLQSLEE 300 (442)
T ss_pred HHHHHHhccCchhhHHHHHHHHHH-hcCchHHHHHHHh
Confidence 77788887663 2223344 5888888777764
No 54
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.54 E-value=0.00016 Score=49.04 Aligned_cols=39 Identities=31% Similarity=0.535 Sum_probs=36.0
Q ss_pred CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 015496 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQ 203 (405)
Q Consensus 165 DnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aq 203 (405)
+++..+.+.||+++|+++|.+++++++..|+|+|+|++.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 477889999999999999999999999999999999873
No 55
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.53 E-value=0.00072 Score=71.93 Aligned_cols=140 Identities=14% Similarity=0.147 Sum_probs=111.5
Q ss_pred CHHHHHHHHH---HHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHH
Q 015496 146 SLEDSQRALQ---ELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM 222 (405)
Q Consensus 146 t~e~k~~AL~---~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll 222 (405)
+.+..-.|+. .++..|..+++. +-...|..|||++|..++.-|+..+..+|.|++-.-...+..|+.+|+|..+.
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg--~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTG--LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcC--CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 3344444433 344444445544 67778999999999889999999999999999988888899999999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCChh-hHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496 223 KMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 223 ~LL~s~~~~v~~kAl~ALS~lir~~~~-~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~ 289 (405)
+++.+.+..+|.+++|+|-.+.-+... -+.++..-=+-..|..+..++ +..+|..+..++.||.-
T Consensus 468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~--d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP--DWAVQEQCFQLLRNLTC 533 (678)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC--CHHHHHHHHHHHHHhhc
Confidence 999999999999999999999887644 344444444556677777776 78899999999999974
No 56
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.40 E-value=0.00043 Score=46.89 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=35.3
Q ss_pred hHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 015496 206 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI 244 (405)
Q Consensus 206 ~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~li 244 (405)
+..+..+++.|+++.|++++++++..++..++|+|+|++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 446778899999999999999888999999999999986
No 57
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.40 E-value=0.00025 Score=60.82 Aligned_cols=86 Identities=22% Similarity=0.282 Sum_probs=66.3
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHH-hcCCHHHHHHhcCCCCHHHHHHHHH
Q 015496 118 KELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLS-KLGGLSVLVGQLNHPDTDIRKISAW 196 (405)
Q Consensus 118 ~~a~~~~~~~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~-~~Ggi~~Lv~lL~s~~~~Ir~~Aa~ 196 (405)
+|-...| ..++.+++|.++++|.++. ++.....|+.+|-++|....+.+.++ ++|+=..++.++++++++||.+|..
T Consensus 31 ~ENa~kf-~~~~~~llk~L~~lL~~s~-d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~ 108 (119)
T PF11698_consen 31 RENADKF-EENNFELLKKLIKLLDKSD-DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALL 108 (119)
T ss_dssp HHHSGGG-SSGGGHHHHHHHHHH-SHH-HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHH
T ss_pred HHHHHHH-HHcccHHHHHHHHHHccCC-CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHH
Confidence 3333444 3367899999999996554 55667789999999999888888777 5677788889999999999999999
Q ss_pred HHHHHhcCC
Q 015496 197 ILGKASQNN 205 (405)
Q Consensus 197 ~Lg~~aqNN 205 (405)
++..+..+|
T Consensus 109 avQklm~~~ 117 (119)
T PF11698_consen 109 AVQKLMVNN 117 (119)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhc
Confidence 999887654
No 58
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.39 E-value=0.0078 Score=61.51 Aligned_cols=184 Identities=17% Similarity=0.137 Sum_probs=135.4
Q ss_pred CCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh
Q 015496 145 LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (405)
Q Consensus 145 ~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~L 224 (405)
....+|++||.=+..+++-.+..+. ...|.+..++.+.++++..+|..|..+|+.++--||+ .+.++||+..|++.
T Consensus 80 ~~~~ER~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~ 155 (371)
T PF14664_consen 80 KNDVEREQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRA 155 (371)
T ss_pred CChHHHHHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHH
Confidence 3567899999999888765444433 4778899999999999999999999999999998884 46789999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCC-----CccH--HHHHHHHHHHHHHhhchhccCCC
Q 015496 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS-----SFEI--RLHRKAVSLVGDLAKCQLENMHK 297 (405)
Q Consensus 225 L~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~-----~~~~--kl~~kA~~lLs~L~~~~~~~~~~ 297 (405)
+-+++.++....+.++-.++ ++|..++.+...--++.|..-+.+. +.+. ..-..+..++..+.++ =+
T Consensus 156 l~d~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lrs-----W~ 229 (371)
T PF14664_consen 156 LIDGSFSISESLLDTLLYLL-DSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRS-----WP 229 (371)
T ss_pred HHhccHhHHHHHHHHHHHHh-CCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhc-----CC
Confidence 98766567777888888886 5677777666544566666555433 1122 2345577777777653 11
Q ss_pred CcchhHHhC-CcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015496 298 VEPPLFRDR-FFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (405)
Q Consensus 298 ~~~~~l~~~-g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~ 338 (405)
...-.-.+. ..++.|++.|..+++++++..+..+..+....
T Consensus 230 GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik 271 (371)
T PF14664_consen 230 GLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIK 271 (371)
T ss_pred ceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC
Confidence 111111122 57999999999999999999999999988653
No 59
>PTZ00429 beta-adaptin; Provisional
Probab=97.32 E-value=0.058 Score=59.86 Aligned_cols=164 Identities=15% Similarity=0.098 Sum_probs=125.3
Q ss_pred CHHHHHHHHHHHHHc-cCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh
Q 015496 146 SLEDSQRALQELLIL-VEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (405)
Q Consensus 146 t~e~k~~AL~~L~~L-ve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~L 224 (405)
+...|..++..+-.+ ....|... +++-+++++.+++.++|...--.+.+.+..+|+..-. ++..|.+=
T Consensus 45 ~~~~kk~alKkvIa~mt~G~DvS~------LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KD 113 (746)
T PTZ00429 45 DSYRKKAAVKRIIANMTMGRDVSY------LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQD 113 (746)
T ss_pred CHHHHHHHHHHHHHHHHCCCCchH------HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHH
Confidence 345666666654443 33444322 5778889999999999999999999999888865432 46788888
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHH
Q 015496 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (405)
Q Consensus 225 L~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~ 304 (405)
+.++++-+|.-|+..+|++ |. +...+.+ +..+.+++.+. ++.+|++|+.++..+... +++ .+.
T Consensus 114 l~d~Np~IRaLALRtLs~I-r~-~~i~e~l-----~~~lkk~L~D~--~pYVRKtAalai~Kly~~-----~pe---lv~ 176 (746)
T PTZ00429 114 TTNSSPVVRALAVRTMMCI-RV-SSVLEYT-----LEPLRRAVADP--DPYVRKTAAMGLGKLFHD-----DMQ---LFY 176 (746)
T ss_pred cCCCCHHHHHHHHHHHHcC-Cc-HHHHHHH-----HHHHHHHhcCC--CHHHHHHHHHHHHHHHhh-----Ccc---ccc
Confidence 8888899999999999997 32 4433333 46788888875 678999999999998742 332 345
Q ss_pred hCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496 305 DRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (405)
Q Consensus 305 ~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~ 337 (405)
+.++++.|.++|...|+.++-.|+.+|..+...
T Consensus 177 ~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 177 QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence 678999999999999999999999999999754
No 60
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.28 E-value=0.0042 Score=54.60 Aligned_cols=110 Identities=14% Similarity=0.056 Sum_probs=93.1
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015496 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (405)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL 225 (405)
+.|.|+..+-+|.++.-+.-|=.-+..+..+..++..|..++..+...+...|+|+|-. +...+.|++.+++|.++..+
T Consensus 30 ~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d-~~n~~~I~ea~g~plii~~l 108 (173)
T KOG4646|consen 30 NIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD-KTNAKFIREALGLPLIIFVL 108 (173)
T ss_pred cHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC-hHHHHHHHHhcCCceEEeec
Confidence 56889999999999988888888899999999999999999999999999999999964 88889999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 015496 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYV 256 (405)
Q Consensus 226 ~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~ 256 (405)
+++...+--.|+.++--+.-++..-++.+..
T Consensus 109 ssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~ 139 (173)
T KOG4646|consen 109 SSPPEITVHSAALFLQLLEFGERTERDELLS 139 (173)
T ss_pred CCChHHHHHHHHHHHHHhcCcccchhHHhcc
Confidence 9988766666666666666555555555544
No 61
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.016 Score=62.22 Aligned_cols=150 Identities=13% Similarity=0.060 Sum_probs=105.1
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHh------c-CCHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 015496 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK------L-GGLSVLVGQLNHPDTDIRKISAWILGKAS 202 (405)
Q Consensus 130 ~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~------~-Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~a 202 (405)
++++....+.|.+++. .-.+.|+.+|..++|+. |.-+.. + =.+|.++.+.+|++|.||..|..|+-...
T Consensus 127 pelLp~L~~~L~s~d~--n~~EgA~~AL~KIcEDs--a~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i 202 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDY--NTCEGAFGALQKICEDS--AQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFI 202 (885)
T ss_pred hhHHHHHHHHhcCCcc--cccchhHHHHHHHHhhh--HHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhhee
Confidence 5777778888877652 23456777777777653 222111 1 14889999999999999999999998877
Q ss_pred cCChHhHHHHHH-cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--cCcHHHHHHhhcCCCccHHHHHH
Q 015496 203 QNNPLVQKQVLE-LGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV--EAGDLMLQDILGNSSFEIRLHRK 279 (405)
Q Consensus 203 qNN~~~Q~~vle-~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~--~gGi~~L~~lL~s~~~~~kl~~k 279 (405)
-.++ |..... -..+..|..+..+++++||+..+.|+.-+..-.+. .+.- .|.++.+++..++. +..+...
T Consensus 203 ~~~~--qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d---kl~phl~~IveyML~~tqd~--dE~VALE 275 (885)
T KOG2023|consen 203 IIQT--QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD---KLVPHLDNIVEYMLQRTQDV--DENVALE 275 (885)
T ss_pred ecCc--HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH---hcccchHHHHHHHHHHccCc--chhHHHH
Confidence 6543 222221 25677888888888899999999999988765443 2322 35667777766665 5568889
Q ss_pred HHHHHHHHhhc
Q 015496 280 AVSLVGDLAKC 290 (405)
Q Consensus 280 A~~lLs~L~~~ 290 (405)
||-+...+|.+
T Consensus 276 ACEFwla~aeq 286 (885)
T KOG2023|consen 276 ACEFWLALAEQ 286 (885)
T ss_pred HHHHHHHHhcC
Confidence 99999999864
No 62
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.26 E-value=0.00088 Score=52.99 Aligned_cols=86 Identities=16% Similarity=0.224 Sum_probs=66.4
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCC
Q 015496 218 LSKLMKMV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH 296 (405)
Q Consensus 218 lp~Ll~LL-~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~ 296 (405)
||.|++.| +++++.+|..|+++|+.+- .+ ..++.|..+++++ +..+|..|++++..+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--~~---------~~~~~L~~~l~d~--~~~vr~~a~~aL~~i~-------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG--DP---------EAIPALIELLKDE--DPMVRRAAARALGRIG-------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT--HH---------HHHHHHHHHHTSS--SHHHHHHHHHHHHCCH--------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH---------hHHHHHHHHHcCC--CHHHHHHHHHHHHHhC--------
Confidence 68899999 7777899999999999441 12 2478999999765 7889999999998763
Q ss_pred CCcchhHHhCCcHHHHHHhccCC-ChHHHHHHHHHHH
Q 015496 297 KVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIK 332 (405)
Q Consensus 297 ~~~~~~l~~~g~l~~Lv~LL~~~-D~~v~E~al~aL~ 332 (405)
+...++.|.+++.++ +..+++.|+.+|+
T Consensus 60 --------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --------DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 234788899988876 5556888888774
No 63
>PTZ00429 beta-adaptin; Provisional
Probab=97.25 E-value=0.034 Score=61.71 Aligned_cols=159 Identities=12% Similarity=0.148 Sum_probs=103.5
Q ss_pred HhHHHHHHHHHHc-CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhcCCCCHH
Q 015496 112 KRQMEIKELMEKL-KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTD 189 (405)
Q Consensus 112 ~r~~~L~~a~~~~-~~~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve-~iDnA~~~~~~Ggi~~Lv~lL~s~~~~ 189 (405)
+|++-+|+++..+ .|.+...+.-..++.+.+. +.+.|.-..--+..+.+ +.|.+-. .+..|.+-+.++|+-
T Consensus 48 ~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~--d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KDl~d~Np~ 120 (746)
T PTZ00429 48 RKKAAVKRIIANMTMGRDVSYLFVDVVKLAPST--DLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQDTTNSSPV 120 (746)
T ss_pred HHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHHcCCCCHH
Confidence 3566677777665 3555555555666655443 56677666555555544 2232211 355667777788888
Q ss_pred HHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcC
Q 015496 190 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN 269 (405)
Q Consensus 190 Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s 269 (405)
+|..|.++++++-- |..-+. .++.+.+.+.+.++-||++|+.|+..+-+.+|. .+...|-++.|..+|.+
T Consensus 121 IRaLALRtLs~Ir~--~~i~e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D 190 (746)
T PTZ00429 121 VRALAVRTMMCIRV--SSVLEY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLND 190 (746)
T ss_pred HHHHHHHHHHcCCc--HHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcC
Confidence 88888888887663 444443 346677777777788888888888888777664 23344556677777776
Q ss_pred CCccHHHHHHHHHHHHHHhh
Q 015496 270 SSFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 270 ~~~~~kl~~kA~~lLs~L~~ 289 (405)
. +..+...|+.++..++.
T Consensus 191 ~--dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 191 N--NPVVASNAAAIVCEVND 208 (746)
T ss_pred C--CccHHHHHHHHHHHHHH
Confidence 4 56678888888877764
No 64
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.0014 Score=68.45 Aligned_cols=138 Identities=10% Similarity=0.074 Sum_probs=111.4
Q ss_pred HHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCc
Q 015496 193 ISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSF 272 (405)
Q Consensus 193 ~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~ 272 (405)
.++.+|-.++..-...+.-..++....+|+++|+.++.-+.--+..+++|.+=.+.+.+..|+..|.+..|+.++.+.
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK-- 485 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK-- 485 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc--
Confidence 344556666666566666677788899999999987666667789999999989999999999999999999999976
Q ss_pred cHHHHHHHHHHHHHHhhchhccCCC-CcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496 273 EIRLHRKAVSLVGDLAKCQLENMHK-VEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (405)
Q Consensus 273 ~~kl~~kA~~lLs~L~~~~~~~~~~-~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~ 337 (405)
|..+|.+..|.+.++..+ .++ +..+.+.+ -.+..++++.+.++..+|++++..|.+++.+
T Consensus 486 DdaLqans~wvlrHlmyn----cq~~ekf~~Lak-ig~~kvl~~~NDpc~~vq~q~lQilrNftc~ 546 (743)
T COG5369 486 DDALQANSEWVLRHLMYN----CQKNEKFKFLAK-IGVEKVLSYTNDPCFKVQHQVLQILRNFTCD 546 (743)
T ss_pred hhhhhhcchhhhhhhhhc----CcchhhhhhHHh-cCHHHHHHHhcCcccccHHHHHHHHHhcccc
Confidence 567999999999999874 222 23344444 4567889999999999999999999999874
No 65
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.086 Score=54.98 Aligned_cols=188 Identities=16% Similarity=0.123 Sum_probs=119.8
Q ss_pred CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCH-HHH--------
Q 015496 163 PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV-EEA-------- 233 (405)
Q Consensus 163 ~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~-~v~-------- 233 (405)
-.+|.+++..+|.++.|+++....+++++......+-|++-. ...+..++..|.+|.|..++.++.. .+.
T Consensus 334 f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD-~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S 412 (791)
T KOG1222|consen 334 FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFD-SGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLS 412 (791)
T ss_pred hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhcccc-ccccHHHhhccchHHHHHHhCCcccchhhhhhhhhhc
Confidence 358999999999999999999999999999999999999975 4578888999999999999998742 222
Q ss_pred ----HHHHHH--------------------------HH-HHhcCChhhHHHHHhcCcHHHHH------------------
Q 015496 234 ----VKALYT--------------------------VS-SLIRNNLAGQEMFYVEAGDLMLQ------------------ 264 (405)
Q Consensus 234 ----~kAl~A--------------------------LS-~lir~~~~~~~~f~~~gGi~~L~------------------ 264 (405)
.|+++| ++ |++-+. .+.+.+++-.|+..|+
T Consensus 413 ~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnk-RNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRni 491 (791)
T KOG1222|consen 413 CDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNK-RNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNI 491 (791)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcc-ccceEEecCcchHHHHHHHhcccchHHHHHHHHh
Confidence 222222 11 222111 1111112222333332
Q ss_pred -------------------HhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC--ChHH
Q 015496 265 -------------------DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDL 323 (405)
Q Consensus 265 -------------------~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~--D~~v 323 (405)
..++.+ .+..+-..+...+.+|.. ++-+....+.+..++|.+-..|... ..++
T Consensus 492 SqHeg~tqn~FidyvgdLa~i~~nd-~~E~F~~EClGtlanL~v-----~dldw~~ilq~~~LvPw~k~~L~pga~eddL 565 (791)
T KOG1222|consen 492 SQHEGATQNMFIDYVGDLAGIAKND-NSESFGLECLGTLANLKV-----TDLDWAKILQSENLVPWMKTQLQPGADEDDL 565 (791)
T ss_pred hhccchHHHHHHHHHHHHHHHhhcC-chHHHHHHHHHHHhhccc-----CCCCHHHHHhhccccHHHHHhhcCCccchhh
Confidence 222222 122333444444444432 2334555677789999998888764 4456
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHH
Q 015496 324 QEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ 360 (405)
Q Consensus 324 ~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~ 360 (405)
+-...-+++.++.. ..|...+. ..|+-+.|..|.+
T Consensus 566 vL~~vi~~GT~a~d-~~cA~Lla-~a~~i~tlieLL~ 600 (791)
T KOG1222|consen 566 VLQIVIACGTMARD-LDCARLLA-PAKLIDTLIELLQ 600 (791)
T ss_pred hhHHHHHhhhhhhh-hHHHHHhC-ccccHHHHHHHHH
Confidence 66666778888765 45777777 5666666655553
No 66
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.11 E-value=0.024 Score=58.91 Aligned_cols=175 Identities=16% Similarity=0.023 Sum_probs=127.0
Q ss_pred CHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhHHHHHHc-----CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh
Q 015496 175 GLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLEL-----GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL 248 (405)
Q Consensus 175 gi~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~-----G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~ 248 (405)
....++++|+ ..++++.......+..+.+.+|...+.|.+. ....+++.+|..++..+..+|++.|+.++...+
T Consensus 54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~ 133 (429)
T cd00256 54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGL 133 (429)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCc
Confidence 3556677775 4779999999999999999999988888876 567888899988888889999999999987644
Q ss_pred hhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC--ChHHHHH
Q 015496 249 AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEK 326 (405)
Q Consensus 249 ~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~--D~~v~E~ 326 (405)
.........--++.|...+++. .+...+.-++.++..|.+ .+..+..|.+.++++.|+++|+.. +.+++=.
T Consensus 134 ~~~~~~~l~~~~~~l~~~l~~~-~~~~~~~~~v~~L~~LL~------~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~ 206 (429)
T cd00256 134 AKMEGSDLDYYFNWLKEQLNNI-TNNDYVQTAARCLQMLLR------VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQ 206 (429)
T ss_pred cccchhHHHHHHHHHHHHhhcc-CCcchHHHHHHHHHHHhC------CchHHHHHHHccCHHHHHHHHhhccccHHHHHH
Confidence 3222111111234566667654 234566678889999985 467888888888999999999763 6788999
Q ss_pred HHHHHHHHhcCChhhHHHHHhcCCchHHHHHH
Q 015496 327 ALAAIKNLLQLRTTEALVLKDFCGLDTALERL 358 (405)
Q Consensus 327 al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L 358 (405)
++.+++-|+-.++ ...... ..++-+.+..+
T Consensus 207 ~ll~lWlLSF~~~-~~~~~~-~~~~i~~l~~i 236 (429)
T cd00256 207 SIFCIWLLTFNPH-AAEVLK-RLSLIQDLSDI 236 (429)
T ss_pred HHHHHHHHhccHH-HHHhhc-cccHHHHHHHH
Confidence 9999999986543 333333 45555544444
No 67
>PF05536 Neurochondrin: Neurochondrin
Probab=97.09 E-value=0.017 Score=61.99 Aligned_cols=153 Identities=16% Similarity=0.121 Sum_probs=120.7
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhH---HHHHHcCcHHHHHHhhcCC-------CHHHHHHHHHHHHHHh
Q 015496 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ---KQVLELGALSKLMKMVKSS-------FVEEAVKALYTVSSLI 244 (405)
Q Consensus 175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q---~~vle~G~lp~Ll~LL~s~-------~~~v~~kAl~ALS~li 244 (405)
.+...+.+|++.+.+=|+.+.-.+++++.+++..+ +.|.+.=+.+.|-+||+++ ....+.-|+.-|++.+
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 35677889998889999999999999999887433 4578887778888999883 2345778888899998
Q ss_pred cCChhh--HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChH
Q 015496 245 RNNLAG--QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLD 322 (405)
Q Consensus 245 r~~~~~--~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~ 322 (405)
+. |.. ...| .+=+|.|+.++.+.. +..+...+..+|..++. .++-...+.+.|.++.|++.+.+ ...
T Consensus 86 ~~-~~~a~~~~~--~~~IP~Lle~l~~~s-~~~~v~dalqcL~~Ias------~~~G~~aLl~~g~v~~L~ei~~~-~~~ 154 (543)
T PF05536_consen 86 RD-PELASSPQM--VSRIPLLLEILSSSS-DLETVDDALQCLLAIAS------SPEGAKALLESGAVPALCEIIPN-QSF 154 (543)
T ss_pred CC-hhhhcCHHH--HHHHHHHHHHHHcCC-chhHHHHHHHHHHHHHc------CcHhHHHHHhcCCHHHHHHHHHh-Ccc
Confidence 84 332 2333 357899999998763 44678899999999984 46677789999999999999887 557
Q ss_pred HHHHHHHHHHHHhcCC
Q 015496 323 LQEKALAAIKNLLQLR 338 (405)
Q Consensus 323 v~E~al~aL~~L~~~~ 338 (405)
..|.++.++.+++...
T Consensus 155 ~~E~Al~lL~~Lls~~ 170 (543)
T PF05536_consen 155 QMEIALNLLLNLLSRL 170 (543)
T ss_pred hHHHHHHHHHHHHHhc
Confidence 7899999999988653
No 68
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.13 Score=58.21 Aligned_cols=172 Identities=19% Similarity=0.201 Sum_probs=113.0
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhc--CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHH
Q 015496 146 SLEDSQRALQELLILVEPIDNANDLSKL--GGLSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLM 222 (405)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~~~~~--Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN-~~~Q~~vle~G~lp~Ll 222 (405)
+...|..||-+|.-..|.- .+.+... ..++.++++|+.++|.||..|+.+||-++.+= |..|+.. ..-.+|.|+
T Consensus 361 ~w~~R~AaL~Als~i~EGc--~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~-~e~l~~aL~ 437 (1075)
T KOG2171|consen 361 EWKERHAALLALSVIAEGC--SDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKH-HERLPPALI 437 (1075)
T ss_pred CHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHH-HHhccHHHH
Confidence 4567888888888877653 1222221 34667778999999999999999999999873 4444443 345677888
Q ss_pred HhhcCCC-HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHH-HHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcc
Q 015496 223 KMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP 300 (405)
Q Consensus 223 ~LL~s~~-~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~-~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~ 300 (405)
..+.+.. +.++..|..|+=|....++...-.=+--+-++ .+..+++++ ...+|..++.+|...+.- ....+.
T Consensus 438 ~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~--~~~v~e~vvtaIasvA~A----A~~~F~ 511 (1075)
T KOG2171|consen 438 ALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSS--KPYVQEQAVTAIASVADA----AQEKFI 511 (1075)
T ss_pred HHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHH----HhhhhH
Confidence 8888754 57788788887777666544321111123444 333344454 678999999999999852 333333
Q ss_pred hhHHhCCcHHHHHHhccCCC-hHHHHHHH
Q 015496 301 PLFRDRFFLKSVVDLTASAD-LDLQEKAL 328 (405)
Q Consensus 301 ~~l~~~g~l~~Lv~LL~~~D-~~v~E~al 328 (405)
+.+ ..+++.|.+.|.+.+ .+.++-.-
T Consensus 512 pY~--d~~Mp~L~~~L~n~~~~d~r~Lrg 538 (1075)
T KOG2171|consen 512 PYF--DRLMPLLKNFLQNADDKDLRELRG 538 (1075)
T ss_pred hHH--HHHHHHHHHHHhCCCchhhHHHHh
Confidence 333 257888888887753 55554333
No 69
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.05 E-value=0.025 Score=57.81 Aligned_cols=201 Identities=15% Similarity=0.115 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcC--CCCHHHHHHHHHHHHHHhcCCh
Q 015496 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN--HPDTDIRKISAWILGKASQNNP 206 (405)
Q Consensus 129 d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~--s~~~~Ir~~Aa~~Lg~~aqNN~ 206 (405)
+-++-+.-++.+-+.+.+.+-...+..=|..++.-....-.|+...|+..++..|. ..+-.+|-+.+.|+=-++-| |
T Consensus 153 e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn-~ 231 (442)
T KOG2759|consen 153 ELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN-P 231 (442)
T ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC-H
Confidence 44555555554444444555555565566666666667778888999999999883 35677888888888777775 5
Q ss_pred HhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChh------------------------------------
Q 015496 207 LVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLA------------------------------------ 249 (405)
Q Consensus 207 ~~Q~~vle~G~lp~Ll~LL~s~~-~~v~~kAl~ALS~lir~~~~------------------------------------ 249 (405)
...+.+-..+.|+.|.+++++.. +.|-.-.+..+-|++-..+.
T Consensus 232 ~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~d 311 (442)
T KOG2759|consen 232 HAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDD 311 (442)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHH
Confidence 56677777899999999998754 34545566666666655531
Q ss_pred --------------------------------------------hHHHHHh--cCcHHHHHHhhcCCCccHHHHHHHHHH
Q 015496 250 --------------------------------------------GQEMFYV--EAGDLMLQDILGNSSFEIRLHRKAVSL 283 (405)
Q Consensus 250 --------------------------------------------~~~~f~~--~gGi~~L~~lL~s~~~~~kl~~kA~~l 283 (405)
+.+.|.+ .-.+..|+++|++++ |+.+..-||+=
T Consensus 312 i~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~-Dp~iL~VAc~D 390 (442)
T KOG2759|consen 312 IEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSN-DPIILCVACHD 390 (442)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCC-CCceeehhhhh
Confidence 2333332 225667777777653 45556667777
Q ss_pred HHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015496 284 VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336 (405)
Q Consensus 284 Ls~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~ 336 (405)
|+.+.++ .|+-+..+.+.|+-..+.++++++|++|+-+|+.|+..|..
T Consensus 391 Ige~Vr~-----yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 391 IGEYVRH-----YPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHh-----CchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 7777763 57777788888999999999999999999999999988864
No 70
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.05 E-value=0.0074 Score=53.05 Aligned_cols=127 Identities=10% Similarity=0.058 Sum_probs=96.3
Q ss_pred CHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 015496 175 GLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM 253 (405)
Q Consensus 175 gi~~Lv~lL-~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~ 253 (405)
=+..||.-. ...+.+-+.+..-=|+|.|- .|..-....+.+++..++.-|..+++.+.+-++.+|+|+|-+ +.+..-
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d-~~n~~~ 94 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD-KTNAKF 94 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC-hHHHHH
Confidence 345555443 45788888888878888885 588999999999999999999999999999999999999975 566777
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHH
Q 015496 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK 310 (405)
Q Consensus 254 f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~ 310 (405)
+.+++|++.++.+++++ ...+...++.++..|+. ++...++.+....++.
T Consensus 95 I~ea~g~plii~~lssp--~e~tv~sa~~~l~~l~~-----~~Rt~r~ell~p~Vv~ 144 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSP--PEITVHSAALFLQLLEF-----GERTERDELLSPAVVR 144 (173)
T ss_pred HHHhcCCceEEeecCCC--hHHHHHHHHHHHHHhcC-----cccchhHHhccHHHHH
Confidence 78899999999999987 34455667777777774 3444444444433333
No 71
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.89 E-value=0.01 Score=66.33 Aligned_cols=181 Identities=13% Similarity=0.098 Sum_probs=135.1
Q ss_pred CCCchhHHHhcCCHHHHHHhcCC-C--CHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHH
Q 015496 163 PIDNANDLSKLGGLSVLVGQLNH-P--DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALY 238 (405)
Q Consensus 163 ~iDnA~~~~~~Ggi~~Lv~lL~s-~--~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~-~~v~~kAl~ 238 (405)
+...--+++|-+|...+++.|.. + +++-|..||.+|+.++.|-+.-|+..++.+.|..-+..+.++. +-+|.-.+-
T Consensus 543 D~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~i 622 (1387)
T KOG1517|consen 543 DPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCI 622 (1387)
T ss_pred CchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHH
Confidence 34455689999999999999975 3 4799999999999999999999999999999999999998864 556888999
Q ss_pred HHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCC--Ccch---------hHHhCC
Q 015496 239 TVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK--VEPP---------LFRDRF 307 (405)
Q Consensus 239 ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~--~~~~---------~l~~~g 307 (405)
+||-+=.+++.++-.=...+..+.|..+|.++ -+.+|.-|+|+|..|..+.-++.++ ...+ .-.+.-
T Consensus 623 cLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~--vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~ 700 (1387)
T KOG1517|consen 623 CLGRLWEDYDEARWSGRRDNAHEKLILLLSDP--VPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDL 700 (1387)
T ss_pred HHHHHhhhcchhhhccccccHHHHHHHHhcCc--cHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHH
Confidence 99999999999988888899999999999986 5678999999999998742000110 0000 001111
Q ss_pred cH---HHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 015496 308 FL---KSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVL 345 (405)
Q Consensus 308 ~l---~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v 345 (405)
+. ..++.+++...+=++....-+|..++-+...+-..+
T Consensus 701 i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~v 741 (1387)
T KOG1517|consen 701 IIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVV 741 (1387)
T ss_pred HHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHH
Confidence 11 245555666666777667777777665544433333
No 72
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.84 E-value=0.017 Score=59.87 Aligned_cols=118 Identities=15% Similarity=0.077 Sum_probs=93.9
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 015496 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY 255 (405)
Q Consensus 176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~ 255 (405)
+..|+..|.++++.+|..++..||.+-. .++.+.|+.+|+++++.++..++.+++.. ..
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~-----------~~a~~~L~~~L~~~~p~vR~aal~al~~r--~~-------- 146 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGG-----------RQAEPWLEPLLAASEPPGRAIGLAALGAH--RH-------- 146 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCc-----------hHHHHHHHHHhcCCChHHHHHHHHHHHhh--cc--------
Confidence 8899999999999999999999996442 35678899999998899998888777762 11
Q ss_pred hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHH
Q 015496 256 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334 (405)
Q Consensus 256 ~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L 334 (405)
.-.+.|..+|++. +..++..|+.++..+-. ...++.|...+.+.|+.|+..|+.++..+
T Consensus 147 --~~~~~L~~~L~d~--d~~Vra~A~raLG~l~~----------------~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 147 --DPGPALEAALTHE--DALVRAAALRALGELPR----------------RLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred --ChHHHHHHHhcCC--CHHHHHHHHHHHHhhcc----------------ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 1245788888865 77899999999988752 23566677888999999999999888766
No 73
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.82 E-value=0.007 Score=63.46 Aligned_cols=170 Identities=11% Similarity=0.138 Sum_probs=127.6
Q ss_pred hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh-
Q 015496 172 KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG- 250 (405)
Q Consensus 172 ~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~- 250 (405)
+....++|++.|+.|+.-|...+...+.|.+---...|..+++.|.|..|+.++.+.++..+++.+|.+--+.-|+...
T Consensus 429 d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~e 508 (743)
T COG5369 429 DYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNE 508 (743)
T ss_pred ccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchh
Confidence 3456788999999988888899999999988777779999999999999999999988899999999999888776544
Q ss_pred HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhC----CcHHHHHHhccCCC-hHHHH
Q 015496 251 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR----FFLKSVVDLTASAD-LDLQE 325 (405)
Q Consensus 251 ~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~----g~l~~Lv~LL~~~D-~~v~E 325 (405)
+-.|+...|+..++.+..++ ..++|.....++.|+.-.. .-++...+.+.+. =+.+.+++-+...+ .++++
T Consensus 509 kf~~Lakig~~kvl~~~NDp--c~~vq~q~lQilrNftc~~--~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~ 584 (743)
T COG5369 509 KFKFLAKIGVEKVLSYTNDP--CFKVQHQVLQILRNFTCDT--SKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILE 584 (743)
T ss_pred hhhhHHhcCHHHHHHHhcCc--ccccHHHHHHHHHhccccc--ccccccceeEEecChHHHHHHHHHHHHHhcCchhhhh
Confidence 55788889999999999887 7889999999999996310 0122333333322 24455666666654 44554
Q ss_pred HHHHHHHHHhcCChhhHHHHH
Q 015496 326 KALAAIKNLLQLRTTEALVLK 346 (405)
Q Consensus 326 ~al~aL~~L~~~~~~~~~~v~ 346 (405)
. +..|.+++...++-++.+.
T Consensus 585 ~-~yilv~~aa~d~~l~~~V~ 604 (743)
T COG5369 585 G-CYILVRNAACDDTLDYIVQ 604 (743)
T ss_pred h-HHHHHHHHhccchHHHHHH
Confidence 4 6666666665555566555
No 74
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.80 E-value=0.0042 Score=51.90 Aligned_cols=58 Identities=10% Similarity=0.055 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496 233 AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (405)
Q Consensus 233 ~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~ 290 (405)
|.-.+..|+|++-.++..++.+.+.||+++++..-.-+..++-++.-|.|+|.+||.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~ 60 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEG 60 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhC
Confidence 4557888999999999999999999999999998765546888999999999999963
No 75
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.79 E-value=0.038 Score=60.86 Aligned_cols=138 Identities=18% Similarity=0.217 Sum_probs=82.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 015496 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY 255 (405)
Q Consensus 176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~ 255 (405)
++-+++...+.+.++|..-=--+-..++++| +.+++ +++.+.+=+.++++.+|..|+..+|.+ |.. ....
T Consensus 57 f~dViK~~~trd~ElKrL~ylYl~~yak~~P--~~~lL---avNti~kDl~d~N~~iR~~AlR~ls~l-~~~-el~~--- 126 (757)
T COG5096 57 FPDVIKNVATRDVELKRLLYLYLERYAKLKP--ELALL---AVNTIQKDLQDPNEEIRGFALRTLSLL-RVK-ELLG--- 126 (757)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhccCH--HHHHH---HHHHHHhhccCCCHHHHHHHHHHHHhc-ChH-HHHH---
Confidence 4555555556666666666666666666666 33333 456666666666677777777777655 322 1111
Q ss_pred hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015496 256 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (405)
Q Consensus 256 ~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~ 335 (405)
..++++.+++.++ ...+|+.|+.++..+-+ .++ ..+.+.|.+..+..++...|+.|...|+.+|..+-
T Consensus 127 --~~~~~ik~~l~d~--~ayVRk~Aalav~kly~-----ld~---~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 127 --NIIDPIKKLLTDP--HAYVRKTAALAVAKLYR-----LDK---DLYHELGLIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred --HHHHHHHHHccCC--cHHHHHHHHHHHHHHHh-----cCH---hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 2346666666665 34567777777777653 122 13445566666666666667777776666666654
No 76
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.77 E-value=0.0026 Score=46.38 Aligned_cols=54 Identities=15% Similarity=0.106 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015496 231 EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 287 (405)
Q Consensus 231 ~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L 287 (405)
.+|..|+++|++++.+.+..... +....++.|..+|+++ +..+|..|+|+|++|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~--~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDD--DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSS--SHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCC--CHHHHHHHHHHHhcC
Confidence 57899999999998887776655 3457889999999876 448999999999875
No 77
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=96.66 E-value=0.044 Score=49.69 Aligned_cols=112 Identities=15% Similarity=0.114 Sum_probs=77.7
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHhcCcHHHHHHhhcCC-------CccHHHHHHHHHHHHHHh
Q 015496 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL-AGQEMFYVEAGDLMLQDILGNS-------SFEIRLHRKAVSLVGDLA 288 (405)
Q Consensus 217 ~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~-~~~~~f~~~gGi~~L~~lL~s~-------~~~~kl~~kA~~lLs~L~ 288 (405)
....+++.+.+.+... +.+..|.-.+|.++ ...+.|++.||+..|..+|..- ..+..+...++.++..|+
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 3445666666544322 67777877778765 4589999999999999998421 134567888999999998
Q ss_pred hchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015496 289 KCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (405)
Q Consensus 289 ~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~ 335 (405)
.+ .......+...+++..++..|.++++.++..++..|..++
T Consensus 145 n~-----~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 NT-----KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SS-----HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred cc-----HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 43 2222333445699999999999999999999998888764
No 78
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.078 Score=59.66 Aligned_cols=137 Identities=18% Similarity=0.200 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHcc-CCCCchhHHHh----cCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHH
Q 015496 148 EDSQRALQELLILV-EPIDNANDLSK----LGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKL 221 (405)
Q Consensus 148 e~k~~AL~~L~~Lv-e~iDnA~~~~~----~Ggi~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~L 221 (405)
+--.-+|.+|.+++ .+.|-|..|-. +|.++.++.+|. +.++.++..|..++.-+..| .+|-..+...|.+..|
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan-~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN-KECVTDLATCNVLTTL 1818 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc-cHHHHHHHhhhHHHHH
Confidence 33345788888877 46788777654 788999999886 58899999999999888775 5588888899999999
Q ss_pred HHhhcCCCHHHHH---HHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhch
Q 015496 222 MKMVKSSFVEEAV---KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 291 (405)
Q Consensus 222 l~LL~s~~~~v~~---kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~ 291 (405)
+.+|.|-. +.|. ..+|||++ ++.....-.++||+..|..++-..+ ....|..|+.++.-|...+
T Consensus 1819 L~lLHS~P-S~R~~vL~vLYAL~S----~~~i~keA~~hg~l~yil~~~c~~~-~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1819 LTLLHSQP-SMRARVLDVLYALSS----NGQIGKEALEHGGLMYILSILCLTN-SDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred HHHHhcCh-HHHHHHHHHHHHHhc----CcHHHHHHHhcCchhhhhHHHhccC-cHHHHHHHHHHHHHhhhcc
Confidence 99998743 3444 45666654 4666777788999998888775442 4557888999999987654
No 79
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=96.54 E-value=0.043 Score=56.94 Aligned_cols=154 Identities=13% Similarity=0.119 Sum_probs=118.5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhHHHH
Q 015496 134 QIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQV 212 (405)
Q Consensus 134 k~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~v 212 (405)
...+.++..+......+..+-.-|+++.- -+|...+...| +..++.+-+ ...++++...+.+|+++-....+.-+..
T Consensus 183 D~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~L 260 (832)
T KOG3678|consen 183 DLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRL 260 (832)
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 34566666676544567888777877542 34555666666 566666554 5678999999999999999888888889
Q ss_pred HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhch
Q 015496 213 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN-NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 291 (405)
Q Consensus 213 le~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~-~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~ 291 (405)
++.|++..++--.+-.++.+-..+..||+|++-+ ....+..+++-..-+.|..+-.+. |.-+|-.||-++.-|+.++
T Consensus 261 vaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk--Del~R~~AClAV~vlat~K 338 (832)
T KOG3678|consen 261 VAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK--DELLRLHACLAVAVLATNK 338 (832)
T ss_pred HhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch--HHHHHHHHHHHHhhhhhhh
Confidence 9999999999888887788877888999997766 456677788888888888776664 5568999999999998764
No 80
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.51 E-value=0.046 Score=49.28 Aligned_cols=122 Identities=16% Similarity=0.127 Sum_probs=96.1
Q ss_pred chhHHHhcCCHHHHHHhcCCCC------HHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC--HHHHHHHH
Q 015496 166 NANDLSKLGGLSVLVGQLNHPD------TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF--VEEAVKAL 237 (405)
Q Consensus 166 nA~~~~~~Ggi~~Lv~lL~s~~------~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~--~~v~~kAl 237 (405)
.|..|++.||++.|++.+.++. .++...+..++-.+....--.. ..++...+.+++..++... .++...|+
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~~~FI~Kia~~Vn~~~~d~~i~q~sL 81 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLSDSFIKKIASYVNSSAMDASILQRSL 81 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhccHHHHHHHHHHHccccccchHHHHHH
Confidence 5889999999999999997644 4677777777777776533233 3455567888888888654 57788899
Q ss_pred HHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496 238 YTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (405)
Q Consensus 238 ~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~ 290 (405)
.-|=+++-+++.....+-+.=-++-|+..|+.+ +..+|.+|..++..|...
T Consensus 82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~--~~~iq~naiaLinAL~~k 132 (160)
T PF11841_consen 82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVS--NQEIQTNAIALINALFLK 132 (160)
T ss_pred HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcC--CHHHHHHHHHHHHHHHhc
Confidence 999999998887777777766788999999885 677999999999999863
No 81
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=0.19 Score=54.88 Aligned_cols=156 Identities=14% Similarity=0.116 Sum_probs=109.6
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhH-HHHHhcCcH
Q 015496 182 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ-EMFYVEAGD 260 (405)
Q Consensus 182 lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~-~~f~~~gGi 260 (405)
-+++++=.-|..|+.+.|.+-.+-...+-.-+..+++|.++.+..+++--++.-+.|+++.++.+.+.+. ....-..-+
T Consensus 372 ~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l 451 (859)
T KOG1241|consen 372 NIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKL 451 (859)
T ss_pred hcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHH
Confidence 4567888889999999999998877777777778999999999997666778889999999998876543 233334556
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhC---CcHHHHHHhccC---CChHHHHHHHHHHHHH
Q 015496 261 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR---FFLKSVVDLTAS---ADLDLQEKALAAIKNL 334 (405)
Q Consensus 261 ~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~---g~l~~Lv~LL~~---~D~~v~E~al~aL~~L 334 (405)
+.++.-|.+ .+++-.+++|++.+|+..-.+...........+. -++..|++.-.. .+..+|..+-.||..|
T Consensus 452 ~~l~~gL~D---ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmEl 528 (859)
T KOG1241|consen 452 SALLEGLND---EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMEL 528 (859)
T ss_pred HHHHHHhhh---CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHH
Confidence 677776765 5789999999999998542111111000011111 234444444333 3568999999999999
Q ss_pred hcCChh
Q 015496 335 LQLRTT 340 (405)
Q Consensus 335 ~~~~~~ 340 (405)
...+++
T Consensus 529 Ik~st~ 534 (859)
T KOG1241|consen 529 IKNSTD 534 (859)
T ss_pred HHcCcH
Confidence 987655
No 82
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.45 E-value=0.0069 Score=52.00 Aligned_cols=73 Identities=23% Similarity=0.293 Sum_probs=63.9
Q ss_pred CHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 015496 175 GLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN 247 (405)
Q Consensus 175 gi~~Lv~lL-~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~ 247 (405)
.+..|+++| .+.++....-||.=||..++..|..+..+-+.|+=..++.|+.+++++||..|+.|+.-++.++
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 117 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVNN 117 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 467888999 5678999999999999999999999998889999999999999999999999999999887653
No 83
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.37 E-value=0.43 Score=49.54 Aligned_cols=89 Identities=20% Similarity=0.028 Sum_probs=63.9
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015496 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (405)
Q Consensus 131 ~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~ 210 (405)
.....++..+.+. ++..+..++..+... ...-.++++.+|+++++.+|..|+.+||.+-.
T Consensus 117 ~a~~~L~~~L~~~--~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~------- 176 (410)
T TIGR02270 117 QAEPWLEPLLAAS--EPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELPR------- 176 (410)
T ss_pred HHHHHHHHHhcCC--ChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-------
Confidence 3334444555433 344555555555441 12246789999999999999999999998764
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 015496 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 243 (405)
Q Consensus 211 ~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~l 243 (405)
..++|.|...+.+.++.||..|+++++-+
T Consensus 177 ----~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 177 ----RLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred ----ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 35778899999999999999999999765
No 84
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.35 E-value=0.12 Score=56.24 Aligned_cols=144 Identities=15% Similarity=0.164 Sum_probs=99.0
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcH-HHHHHhhcCCCHHH---HHHHHHHHHHHhc---CChhhH
Q 015496 179 LVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGAL-SKLMKMVKSSFVEE---AVKALYTVSSLIR---NNLAGQ 251 (405)
Q Consensus 179 Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~l-p~Ll~LL~s~~~~v---~~kAl~ALS~lir---~~~~~~ 251 (405)
++..|+++.+.+|.+|+..++.++-=-..+++.-+ .|-+ -.|.+.|..+.+++ ..+|++||.|.+. -.|+..
T Consensus 804 iL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~-m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~ 882 (1172)
T KOG0213|consen 804 ILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKL-MGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIK 882 (1172)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHH-HHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChh
Confidence 34677899999999999999998852222222111 1222 23567787777776 4577777777662 234432
Q ss_pred HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHH
Q 015496 252 EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAI 331 (405)
Q Consensus 252 ~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL 331 (405)
+.++-|..+|++. ..|++.+..-++.-+|.. .++..+.=.=..++-.|+++|.+-+..++..|.+.+
T Consensus 883 ------dllPrltPILknr--heKVqen~IdLvg~Iadr-----gpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTf 949 (1172)
T KOG0213|consen 883 ------DLLPRLTPILKNR--HEKVQENCIDLVGTIADR-----GPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTF 949 (1172)
T ss_pred ------hhcccchHhhhhh--HHHHHHHHHHHHHHHHhc-----CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4578889999986 689999999999999964 344333221134666788888888888998888888
Q ss_pred HHHhc
Q 015496 332 KNLLQ 336 (405)
Q Consensus 332 ~~L~~ 336 (405)
++++.
T Consensus 950 G~Iak 954 (1172)
T KOG0213|consen 950 GYIAK 954 (1172)
T ss_pred hHHHH
Confidence 87764
No 85
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.30 E-value=0.14 Score=53.56 Aligned_cols=135 Identities=20% Similarity=0.253 Sum_probs=96.9
Q ss_pred HHHHHHHccCCCCchhHHHhcCCHHHHHHhc----------CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHH
Q 015496 153 ALQELLILVEPIDNANDLSKLGGLSVLVGQL----------NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM 222 (405)
Q Consensus 153 AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL----------~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll 222 (405)
+|+.|.-+-.+..++..+..-.|+..|+++- ..++.++...|..||+|+.-++|..|+.+.+.|+.+.++
T Consensus 1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred CHHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 3566777777777888888888888887765 346899999999999999999999999999999999999
Q ss_pred HhhcCC-----CHHH---HHHHHHHHHHHhcCChhhHHHHH-hcCcHHHHHHhhcC--------CC-------ccHHHHH
Q 015496 223 KMVKSS-----FVEE---AVKALYTVSSLIRNNLAGQEMFY-VEAGDLMLQDILGN--------SS-------FEIRLHR 278 (405)
Q Consensus 223 ~LL~s~-----~~~v---~~kAl~ALS~lir~~~~~~~~f~-~~gGi~~L~~lL~s--------~~-------~~~kl~~ 278 (405)
..|+.. +.++ -.+-++-+... .+..+..++ +++|+..|...|.. .. .+.....
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~---~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~ 157 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTAL---RPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALS 157 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcC---ChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHH
Confidence 999876 3332 33444444433 234444444 56888888877631 00 1444566
Q ss_pred HHHHHHHHHhhc
Q 015496 279 KAVSLVGDLAKC 290 (405)
Q Consensus 279 kA~~lLs~L~~~ 290 (405)
.++-++.|+..+
T Consensus 158 EiLKllFNit~~ 169 (446)
T PF10165_consen 158 EILKLLFNITLH 169 (446)
T ss_pred HHHHHHHHhhhc
Confidence 778888888653
No 86
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.24 E-value=0.36 Score=48.18 Aligned_cols=195 Identities=18% Similarity=0.134 Sum_probs=114.8
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHh---cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcC--ChH
Q 015496 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK---LGGLSVLVGQLNHPDTDIRKISAWILGKASQN--NPL 207 (405)
Q Consensus 133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~---~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqN--N~~ 207 (405)
++++++.+.+.. ...|+.+|..+..++..-=. -+++. .-.+..+.+.++.+..+-+..|+.+++-++=. ...
T Consensus 45 L~~~Id~l~eK~--~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~ 121 (309)
T PF05004_consen 45 LKEAIDLLTEKS--SSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGE 121 (309)
T ss_pred HHHHHHHHHhcC--HHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCc
Confidence 555666665543 56788888888876643322 23332 23567778888877767788888888877532 122
Q ss_pred hHHHHHHcCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhc---CChhhHHHHHhcCcHH--HHHHhhcCCC--------c
Q 015496 208 VQKQVLELGALSKLMKMVKSSF--VEEAVKALYTVSSLIR---NNLAGQEMFYVEAGDL--MLQDILGNSS--------F 272 (405)
Q Consensus 208 ~Q~~vle~G~lp~Ll~LL~s~~--~~v~~kAl~ALS~lir---~~~~~~~~f~~~gGi~--~L~~lL~s~~--------~ 272 (405)
-...+++ ...|.|.+.+.+++ ..+|..+++||+-++- +.+....... ..++ ....+.+++. .
T Consensus 122 ~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~ 198 (309)
T PF05004_consen 122 DSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAED 198 (309)
T ss_pred cHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCC
Confidence 3334443 57788999988765 3556777777775432 2222222111 1122 1112222221 1
Q ss_pred cHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015496 273 EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (405)
Q Consensus 273 ~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~ 338 (405)
+..+..-|+..-+-|+.. .++....... ...++.|+.+|.++|.+||-.|-.+|.-|....
T Consensus 199 ~~~l~~aAL~aW~lLlt~----~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 199 DAALVAAALSAWALLLTT----LPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred ccHHHHHHHHHHHHHHhc----CCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 245666676666666642 2221112221 346899999999999999999999998886543
No 87
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.12 E-value=0.1 Score=47.13 Aligned_cols=131 Identities=13% Similarity=0.177 Sum_probs=96.2
Q ss_pred HHHHHHcCcHHHHHHhhcCCCH------HHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015496 209 QKQVLELGALSKLMKMVKSSFV------EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 282 (405)
Q Consensus 209 Q~~vle~G~lp~Ll~LL~s~~~------~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~ 282 (405)
...|++.||++.|++++.++.. +.-..++.|...+.-|+--.. ..+...-+.-++.++.....+..+...+..
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 3468899999999999988763 455677888888877653332 233444456667777655457889999999
Q ss_pred HHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChh-hHHHH
Q 015496 283 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTT-EALVL 345 (405)
Q Consensus 283 lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~-~~~~v 345 (405)
.+-+++.+ ++..-..+.++--++.|+.+|...+.++|..++..+-.|....++ .|+.+
T Consensus 83 ILEs~Vl~-----S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i 141 (160)
T PF11841_consen 83 ILESIVLN-----SPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI 141 (160)
T ss_pred HHHHHHhC-----CHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 99999853 444455666677788999999999999999999988888766554 44444
No 88
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.11 E-value=0.042 Score=58.71 Aligned_cols=83 Identities=13% Similarity=0.193 Sum_probs=62.5
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 015496 177 SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV 256 (405)
Q Consensus 177 ~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~ 256 (405)
..++..-+ .++..+..|+..|......-|..++. +|..+++|..+++..+|..|+..|..+|++++.....+
T Consensus 26 ~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-- 97 (556)
T PF05918_consen 26 KEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-- 97 (556)
T ss_dssp HHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH--
T ss_pred HHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH--
Confidence 33444434 57899999999999999999999986 56789999999999999999999999999998877766
Q ss_pred cCcHHHHHHhhcCC
Q 015496 257 EAGDLMLQDILGNS 270 (405)
Q Consensus 257 ~gGi~~L~~lL~s~ 270 (405)
.++|.++|+++
T Consensus 98 ---aDvL~QlL~td 108 (556)
T PF05918_consen 98 ---ADVLVQLLQTD 108 (556)
T ss_dssp ---HHHHHHHTT--
T ss_pred ---HHHHHHHHhcc
Confidence 47999999976
No 89
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.094 Score=52.43 Aligned_cols=152 Identities=11% Similarity=0.057 Sum_probs=114.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh--HhHHH--HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhH
Q 015496 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNP--LVQKQ--VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ 251 (405)
Q Consensus 176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~--~~Q~~--vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~ 251 (405)
.|.|-.-|.+++..++..||.-+|.+..|.. .+.+. +++.|.+|.++..+..++.++...|+-.|+.+.+ +|.+.
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrial-fpaal 162 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAAL 162 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHH
Confidence 4556667788999999999999999998766 34433 4588999999999999999999999999999987 68888
Q ss_pred HHHHhcCcHHHHHH--h-hcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC-CChHHHHHH
Q 015496 252 EMFYVEAGDLMLQD--I-LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS-ADLDLQEKA 327 (405)
Q Consensus 252 ~~f~~~gGi~~L~~--l-L~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~-~D~~v~E~a 327 (405)
+.+...+-.+.+-. + .+. +.-.|.++..+|-.+.+ .+++........|++..|..-|+. .|.-++-.+
T Consensus 163 eaiFeSellDdlhlrnlaakc---ndiaRvRVleLIieifS-----iSpesaneckkSGLldlLeaElkGteDtLVianc 234 (524)
T KOG4413|consen 163 EAIFESELLDDLHLRNLAAKC---NDIARVRVLELIIEIFS-----ISPESANECKKSGLLDLLEAELKGTEDTLVIANC 234 (524)
T ss_pred HHhcccccCChHHHhHHHhhh---hhHHHHHHHHHHHHHHh-----cCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhH
Confidence 88877665554332 2 232 23367788888888764 455556667778888887776665 577777788
Q ss_pred HHHHHHHhc
Q 015496 328 LAAIKNLLQ 336 (405)
Q Consensus 328 l~aL~~L~~ 336 (405)
+..+..|+.
T Consensus 235 iElvteLae 243 (524)
T KOG4413|consen 235 IELVTELAE 243 (524)
T ss_pred HHHHHHHHH
Confidence 877777775
No 90
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.04 E-value=0.13 Score=55.47 Aligned_cols=158 Identities=15% Similarity=0.093 Sum_probs=113.0
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH-HHH---cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh
Q 015496 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ-VLE---LGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG 250 (405)
Q Consensus 175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~-vle---~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~ 250 (405)
++|.|..+|.+++....+.|..+|..++...+..-+. +.. .-.+|++++..+++++.+|.-|+.++-..+-....+
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qa 208 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQA 208 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHH
Confidence 4566778889999999999999999999875543322 111 136899999999999999999999998866554432
Q ss_pred ----HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHH
Q 015496 251 ----QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEK 326 (405)
Q Consensus 251 ----~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~ 326 (405)
.+.| ++.|..+-.+ .++.+|+..|..+..|..-. ++ ...+.+ .+++..+.......|..+--.
T Consensus 209 l~~~iD~F-----le~lFalanD--~~~eVRk~vC~alv~Llevr---~d-kl~phl--~~IveyML~~tqd~dE~VALE 275 (885)
T KOG2023|consen 209 LYVHIDKF-----LEILFALAND--EDPEVRKNVCRALVFLLEVR---PD-KLVPHL--DNIVEYMLQRTQDVDENVALE 275 (885)
T ss_pred HHHHHHHH-----HHHHHHHccC--CCHHHHHHHHHHHHHHHHhc---HH-hcccch--HHHHHHHHHHccCcchhHHHH
Confidence 2333 3444444444 37789999999999998531 11 111122 378888888888888888888
Q ss_pred HHHHHHHHhcCChhhHHHHH
Q 015496 327 ALAAIKNLLQLRTTEALVLK 346 (405)
Q Consensus 327 al~aL~~L~~~~~~~~~~v~ 346 (405)
|+.....++..+ .++.++.
T Consensus 276 ACEFwla~aeqp-i~~~~L~ 294 (885)
T KOG2023|consen 276 ACEFWLALAEQP-ICKEVLQ 294 (885)
T ss_pred HHHHHHHHhcCc-CcHHHHH
Confidence 999999999875 5666654
No 91
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.02 E-value=0.26 Score=54.46 Aligned_cols=160 Identities=14% Similarity=0.179 Sum_probs=107.7
Q ss_pred HhHHHHHHHHHHcC-CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHH
Q 015496 112 KRQMEIKELMEKLK-TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI 190 (405)
Q Consensus 112 ~r~~~L~~a~~~~~-~~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~I 190 (405)
+|.+-+|..+..|. |.+-..+.-..++... +.+.|.|.-.---++.+.+. +. +..-+ .+..+.+=|.++|+.|
T Consensus 35 ~kidAmK~iIa~M~~G~dmssLf~dViK~~~--trd~ElKrL~ylYl~~yak~-~P--~~~lL-avNti~kDl~d~N~~i 108 (757)
T COG5096 35 KKIDAMKKIIAQMSLGEDMSSLFPDVIKNVA--TRDVELKRLLYLYLERYAKL-KP--ELALL-AVNTIQKDLQDPNEEI 108 (757)
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHhcc-CH--HHHHH-HHHHHHhhccCCCHHH
Confidence 46677777777764 5553444444444333 23556554443333333222 11 22111 4667777888999999
Q ss_pred HHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCC
Q 015496 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 270 (405)
Q Consensus 191 r~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~ 270 (405)
|..|.+.++.+=- ++ +-...++++.+++.++++-||..|+.||..+-+-.+ +.+.+.|-+..+..++.+.
T Consensus 109 R~~AlR~ls~l~~--~e-----l~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~~D~ 178 (757)
T COG5096 109 RGFALRTLSLLRV--KE-----LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELVADS 178 (757)
T ss_pred HHHHHHHHHhcCh--HH-----HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHhhCC
Confidence 9999999998642 21 223578999999999999999999999999976443 4666777788888888765
Q ss_pred CccHHHHHHHHHHHHHHhh
Q 015496 271 SFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 271 ~~~~kl~~kA~~lLs~L~~ 289 (405)
++.+.+.|+..+..+..
T Consensus 179 --dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 179 --DPIVIANALASLAEIDP 195 (757)
T ss_pred --CchHHHHHHHHHHHhch
Confidence 67788999888888764
No 92
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.90 E-value=0.49 Score=49.60 Aligned_cols=195 Identities=18% Similarity=0.124 Sum_probs=136.8
Q ss_pred HhHHHHHHHHHHcC--C--CCHHHHHHHHHHHhhcCCCC----HHHHH-HHHHHHHHccCCCCchhHHHhcCCHHHHHHh
Q 015496 112 KRQMEIKELMEKLK--T--PSDAQLIQIAIDDLNNSTLS----LEDSQ-RALQELLILVEPIDNANDLSKLGGLSVLVGQ 182 (405)
Q Consensus 112 ~r~~~L~~a~~~~~--~--~~d~~lmk~al~~L~~~~~t----~e~k~-~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~l 182 (405)
+|+++-.+-|+.-+ . +...+.+|+-++.+...-.+ .++.+ .|+--|.++.+++..--.+..-..+..||+.
T Consensus 233 kRye~w~~El~k~krs~de~p~netLk~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKa 312 (791)
T KOG1222|consen 233 KRYEFWIAELKKTKRSTDEKPKNETLKEEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKA 312 (791)
T ss_pred HHHHHHHHHHhhhhcccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHH
Confidence 58877776665432 1 11234455544444332111 13333 4566677888888877788888899999999
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHH
Q 015496 183 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 262 (405)
Q Consensus 183 L~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~ 262 (405)
|..++.++-......|-.++- -.+....+.+.|.+.+|++++...++.++...+.-+=|+.-+ ...+...+..|-+|.
T Consensus 313 Ldr~n~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD-~glr~KMv~~GllP~ 390 (791)
T KOG1222|consen 313 LDRSNSSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFD-SGLRPKMVNGGLLPH 390 (791)
T ss_pred HcccchHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhcccc-ccccHHHhhccchHH
Confidence 998888888888777776664 234566677889999999999999988887777777776544 345777888899999
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC
Q 015496 263 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS 318 (405)
Q Consensus 263 L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~ 318 (405)
|..+|.+++. .--|+..++++. .+...+..|....+++.+.+.+-+
T Consensus 391 l~~ll~~d~~----~~iA~~~lYh~S------~dD~~K~MfayTdci~~lmk~v~~ 436 (791)
T KOG1222|consen 391 LASLLDSDTK----HGIALNMLYHLS------CDDDAKAMFAYTDCIKLLMKDVLS 436 (791)
T ss_pred HHHHhCCccc----chhhhhhhhhhc------cCcHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998631 223666777765 356777788888899988876544
No 93
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=95.85 E-value=0.11 Score=51.55 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=23.9
Q ss_pred CCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496 306 RFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (405)
Q Consensus 306 ~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~ 337 (405)
...++.+..++...+.+++..+..+|..+...
T Consensus 179 ~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 179 PEAIPLLIELLEDEDADVRRAAASALGQLGSE 210 (335)
T ss_pred hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcc
Confidence 34566677777777778888888888888765
No 94
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.80 E-value=0.22 Score=54.71 Aligned_cols=199 Identities=20% Similarity=0.236 Sum_probs=115.2
Q ss_pred hHHHHHHHH--HHcCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHH
Q 015496 113 RQMEIKELM--EKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI 190 (405)
Q Consensus 113 r~~~L~~a~--~~~~~~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~I 190 (405)
|++-+.++| .-+|-|...-.| +|++.+.++... |-|+.=|-...-|=|.-| ++-+ ..-.|.+=|+|++--+
T Consensus 51 r~rniaKLlYi~MLGypahFGqi-eclKLias~~f~-dKRiGYLaamLlLdE~qd----vllL-ltNslknDL~s~nq~v 123 (866)
T KOG1062|consen 51 RHRNIAKLLYIHMLGYPAHFGQI-ECLKLIASDNFL-DKRIGYLAAMLLLDERQD----LLLL-LTNSLKNDLNSSNQYV 123 (866)
T ss_pred HHHHHHHHHHHHHhCCCccchhh-HHHHHhcCCCch-HHHHHHHHHHHHhccchH----HHHH-HHHHHHhhccCCCeee
Confidence 444444432 223444444333 466666665543 445444444444433333 2211 1123345567889999
Q ss_pred HHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCC
Q 015496 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 270 (405)
Q Consensus 191 r~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~ 270 (405)
...|.-+||+++. |+.-.. ..|-+-+++++.++-+|+||+-|.-.++|-.|...+.|+ ..-..+|.+.
T Consensus 124 VglAL~alg~i~s--~Emard-----lapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~-----~~~~~lL~ek 191 (866)
T KOG1062|consen 124 VGLALCALGNICS--PEMARD-----LAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFV-----IAFRKLLCEK 191 (866)
T ss_pred hHHHHHHhhccCC--HHHhHH-----hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhh-----HHHHHHHhhc
Confidence 9999999999994 554443 458888999998999999999999999999998888875 2333444433
Q ss_pred CccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC---------------CChHHHHHHHHHHHHHh
Q 015496 271 SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS---------------ADLDLQEKALAAIKNLL 335 (405)
Q Consensus 271 ~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~---------------~D~~v~E~al~aL~~L~ 335 (405)
+..+..-++.++..+|. .+++....+.+ +++.+|..|+. .|+-+|-+.++.|.-|-
T Consensus 192 --~hGVL~~~l~l~~e~c~-----~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLG 262 (866)
T KOG1062|consen 192 --HHGVLIAGLHLITELCK-----ISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILG 262 (866)
T ss_pred --CCceeeeHHHHHHHHHh-----cCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhc
Confidence 23344455556666664 23344444443 33333333321 24556666666665555
Q ss_pred cCCh
Q 015496 336 QLRT 339 (405)
Q Consensus 336 ~~~~ 339 (405)
++..
T Consensus 263 q~d~ 266 (866)
T KOG1062|consen 263 QNDA 266 (866)
T ss_pred CCCc
Confidence 5433
No 95
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.76 E-value=0.015 Score=37.60 Aligned_cols=29 Identities=31% Similarity=0.573 Sum_probs=25.9
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcC
Q 015496 176 LSVLVGQLNHPDTDIRKISAWILGKASQN 204 (405)
Q Consensus 176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqN 204 (405)
+|.+++++++++++||..|+++|+.+++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999999864
No 96
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.72 E-value=0.17 Score=54.25 Aligned_cols=146 Identities=18% Similarity=0.157 Sum_probs=96.4
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHh--HHHHHHcCcHHHHHHhhcCCCHHHH---HHHHHHHHHHhcCC---
Q 015496 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLV--QKQVLELGALSKLMKMVKSSFVEEA---VKALYTVSSLIRNN--- 247 (405)
Q Consensus 176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~--Q~~vle~G~lp~Ll~LL~s~~~~v~---~kAl~ALS~lir~~--- 247 (405)
+..++.+|+|+.|.+|.+|+..+|.++.==..| .+.+.+.|. .|.+.|..+.+++- .+|+++|-+..|-.
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mq 683 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQ 683 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhcccccC
Confidence 344567889999999999999999887410001 111112222 35566666667664 46666666655432
Q ss_pred hhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHH
Q 015496 248 LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKA 327 (405)
Q Consensus 248 ~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~a 327 (405)
||. .|.++.|..+|++. ..|+..+...++.-+|.. .|+....=.=..++-.|+++|.+-+..++..|
T Consensus 684 pPi------~~ilP~ltPILrnk--h~Kv~~nti~lvg~I~~~-----~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A 750 (975)
T COG5181 684 PPI------SGILPSLTPILRNK--HQKVVANTIALVGTICMN-----SPEYIGVREWMRICFELVDSLKSWNKEIRRNA 750 (975)
T ss_pred Cch------hhccccccHhhhhh--hHHHhhhHHHHHHHHHhc-----CcccCCHHHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 221 36678899999987 678999999999999974 33333221112466678888888888888888
Q ss_pred HHHHHHHhc
Q 015496 328 LAAIKNLLQ 336 (405)
Q Consensus 328 l~aL~~L~~ 336 (405)
...++.++.
T Consensus 751 ~~tfG~Is~ 759 (975)
T COG5181 751 TETFGCISR 759 (975)
T ss_pred hhhhhhHHh
Confidence 877777654
No 97
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=95.68 E-value=0.65 Score=47.58 Aligned_cols=177 Identities=15% Similarity=0.079 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcC--CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh
Q 015496 147 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN--HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (405)
Q Consensus 147 ~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~--s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~L 224 (405)
.+.+..++..+++++.+.+.-..+.+.+.=-.++..|. +.+..=|.+|...+..+..-....+ -+-.|.+..++.+
T Consensus 39 ~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~--~~~~~vvralvai 116 (371)
T PF14664_consen 39 KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK--EIPRGVVRALVAI 116 (371)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc--cCCHHHHHHHHHH
Confidence 68888999999999999999999999986666677775 3456678899999988875311111 1245788999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHH
Q 015496 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (405)
Q Consensus 225 L~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~ 304 (405)
..+.++..+.-|+-.|+-++-.+|. .+..+||+..|.+.+.++ ...+....+.++-++.. .|..+..+.
T Consensus 117 ae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~--~~~~~~~l~~~lL~lLd------~p~tR~yl~ 185 (371)
T PF14664_consen 117 AEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDG--SFSISESLLDTLLYLLD------SPRTRKYLR 185 (371)
T ss_pred HhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhc--cHhHHHHHHHHHHHHhC------Ccchhhhhc
Confidence 9998889999999999999988875 677899999999999875 33467778888888874 455555555
Q ss_pred hCCcHHHHHHhccC-------CCh--HHHHHHHHHHHHHhc
Q 015496 305 DRFFLKSVVDLTAS-------ADL--DLQEKALAAIKNLLQ 336 (405)
Q Consensus 305 ~~g~l~~Lv~LL~~-------~D~--~v~E~al~aL~~L~~ 336 (405)
..--+..+..-... ++. +....+..++..+..
T Consensus 186 ~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lr 226 (371)
T PF14664_consen 186 PGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLR 226 (371)
T ss_pred CCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHh
Confidence 43334444433222 122 345566666666654
No 98
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.56 E-value=0.12 Score=56.35 Aligned_cols=143 Identities=19% Similarity=0.166 Sum_probs=114.5
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 015496 174 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM 253 (405)
Q Consensus 174 Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~ 253 (405)
+.++.++++....+-+++...---+.+-++..|..+. ++++.+++=..++++.+|..|+..++++ |- +.....
T Consensus 49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~-----~avnt~~kD~~d~np~iR~lAlrtm~~l-~v-~~i~ey 121 (734)
T KOG1061|consen 49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAI-----LAVNTFLKDCEDPNPLIRALALRTMGCL-RV-DKITEY 121 (734)
T ss_pred hhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHH-----hhhhhhhccCCCCCHHHHHHHhhceeeE-ee-hHHHHH
Confidence 3578889999888899999999999999999986654 6778888888888889999999999876 33 222222
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHH
Q 015496 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKN 333 (405)
Q Consensus 254 f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~ 333 (405)
...+|..+++++ +..+|+.++..+..+-. .+ .+.+.+.|++..|-+++...|+.+...|+.+|..
T Consensus 122 -----~~~Pl~~~l~d~--~~yvRktaa~~vakl~~-----~~---~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~e 186 (734)
T KOG1061|consen 122 -----LCDPLLKCLKDD--DPYVRKTAAVCVAKLFD-----ID---PDLVEDSGLVDALKDLLSDSNPMVVANALAALSE 186 (734)
T ss_pred -----HHHHHHHhccCC--ChhHHHHHHHHHHHhhc-----CC---hhhccccchhHHHHHHhcCCCchHHHHHHHHHHH
Confidence 357899999986 56688888888887752 22 3356778999999999998899999999999999
Q ss_pred HhcCC
Q 015496 334 LLQLR 338 (405)
Q Consensus 334 L~~~~ 338 (405)
+....
T Consensus 187 I~e~~ 191 (734)
T KOG1061|consen 187 IHESH 191 (734)
T ss_pred HHHhC
Confidence 98654
No 99
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.51 E-value=0.066 Score=44.33 Aligned_cols=66 Identities=15% Similarity=0.140 Sum_probs=51.5
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc--CcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 015496 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSSFVEEAVKALYTVSSLI 244 (405)
Q Consensus 175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~--G~lp~Ll~LL~s~~~~v~~kAl~ALS~li 244 (405)
.++|++.++..++..||..||.+|.+++.. .+..++.+ ..++.|.+++.++++.||..| .-|-+++
T Consensus 28 Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~---~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 28 ILPPVLKCFDDQDSRVRYYACEALYNISKV---ARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence 589999999999999999999999999964 45556543 677888888888888877644 4455444
No 100
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.38 E-value=0.56 Score=48.53 Aligned_cols=110 Identities=15% Similarity=0.107 Sum_probs=82.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHh-------------HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 015496 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLV-------------QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 242 (405)
Q Consensus 176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~-------------Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~ 242 (405)
+..|+.+|.+ +++...||..++-+....+.+ ++.+. .-.+|.|++-.++.+.+.+...+.|||.
T Consensus 273 ~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F-~~~~p~L~~~~~~~~~~~k~~yL~ALs~ 349 (415)
T PF12460_consen 273 LDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF-TQVLPKLLEGFKEADDEIKSNYLTALSH 349 (415)
T ss_pred HHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH-HHHHHHHHHHHhhcChhhHHHHHHHHHH
Confidence 5567777766 888999999999999874444 22222 2478999999988777788899999999
Q ss_pred HhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496 243 LIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (405)
Q Consensus 243 lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~ 290 (405)
++++-|...-.=.-..-+|+|++.|..+ +..++.-+..++..+..+
T Consensus 350 ll~~vP~~vl~~~l~~LlPLLlqsL~~~--~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 350 LLKNVPKSVLLPELPTLLPLLLQSLSLP--DADVLLSSLETLKMILEE 395 (415)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHc
Confidence 9998775422111234788999999876 556888999999999863
No 101
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.36 E-value=0.078 Score=41.65 Aligned_cols=65 Identities=17% Similarity=0.277 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 015496 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVE 257 (405)
Q Consensus 191 r~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~-~~v~~kAl~ALS~lir~~~~~~~~f~~~ 257 (405)
...|.|++|++++. +.-...+.+.+.++.++++..+.+ ..+|--|.|+|+-+.+ ...+.+.+.+.
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~ 69 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDEL 69 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHc
Confidence 46899999999984 556666667899999999998655 5899999999997765 45555544443
No 102
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.35 E-value=0.27 Score=45.94 Aligned_cols=132 Identities=14% Similarity=0.029 Sum_probs=83.1
Q ss_pred HHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCH
Q 015496 151 QRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV 230 (405)
Q Consensus 151 ~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~ 230 (405)
..|+.-+..++......-.-.--..+|+|+..+.++..-|+..|..+|.+++++.+..... .++.+.....+.++
T Consensus 71 ~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~Kn~ 145 (228)
T PF12348_consen 71 KTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSKNP 145 (228)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S-H
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCCCH
Confidence 3566666666655543322222235888999999999999999999999999986622221 14666777788889
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHh----cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496 231 EEAVKALYTVSSLIRNNLAGQEMFYV----EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 231 ~v~~kAl~ALS~lir~~~~~~~~f~~----~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~ 289 (405)
.+|..++-.+..++...+.....+-. ..-++.+..++.+. +..+|..|-.++..+..
T Consensus 146 ~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~--~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 146 QVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDA--DPEVREAARECLWALYS 206 (228)
T ss_dssp HHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHH
Confidence 99999999999988877621111111 23456777778876 67788888888887764
No 103
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.25 E-value=0.34 Score=53.06 Aligned_cols=153 Identities=12% Similarity=0.050 Sum_probs=105.2
Q ss_pred CCHHHHHHhcCC--CC-----HHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 015496 174 GGLSVLVGQLNH--PD-----TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN 246 (405)
Q Consensus 174 Ggi~~Lv~lL~s--~~-----~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~ 246 (405)
+.+|.|+++|.. ++ =.+-..|..||.-.+|. +.+.++. -++|.+=+-+++++=.-|..|+.|.+++.-+
T Consensus 319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~---~~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~g 394 (859)
T KOG1241|consen 319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC---VGDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEG 394 (859)
T ss_pred HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH---hcccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcC
Confidence 456778888853 11 23666777788877775 4444544 3445444567777767789999999999987
Q ss_pred ChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHH
Q 015496 247 NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEK 326 (405)
Q Consensus 247 ~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~ 326 (405)
-.+.+..-+-.++++.++.++.++ ..-++.-++|.++-++..- .........-...++.++.-|+ +.+.+-.+
T Consensus 395 p~~~~Lt~iV~qalp~ii~lm~D~--sl~VkdTaAwtlgrI~d~l----~e~~~n~~~l~~~l~~l~~gL~-DePrva~N 467 (859)
T KOG1241|consen 395 PEPDKLTPIVIQALPSIINLMSDP--SLWVKDTAAWTLGRIADFL----PEAIINQELLQSKLSALLEGLN-DEPRVASN 467 (859)
T ss_pred CchhhhhHHHhhhhHHHHHHhcCc--hhhhcchHHHHHHHHHhhc----hhhcccHhhhhHHHHHHHHHhh-hCchHHHH
Confidence 666666667789999999999965 5667889999999999642 1111222222344444544443 46789999
Q ss_pred HHHHHHHHhcC
Q 015496 327 ALAAIKNLLQL 337 (405)
Q Consensus 327 al~aL~~L~~~ 337 (405)
++|++.+|++.
T Consensus 468 ~CWAf~~Laea 478 (859)
T KOG1241|consen 468 VCWAFISLAEA 478 (859)
T ss_pred HHHHHHHHHHH
Confidence 99999999954
No 104
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.24 E-value=0.67 Score=49.56 Aligned_cols=173 Identities=16% Similarity=0.142 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc--CChHhHHHHHHcCcHHHHHHhh
Q 015496 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQ--NNPLVQKQVLELGALSKLMKMV 225 (405)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aq--NN~~~Q~~vle~G~lp~Ll~LL 225 (405)
..|..+++-+.-+.+..+-.-.+.--..+|.+.+-|..+.+++|..+-.+|..++. .||+.|. .+|.|++.+
T Consensus 269 rtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~------~ip~Lld~l 342 (569)
T KOG1242|consen 269 RTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQK------IIPTLLDAL 342 (569)
T ss_pred hhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHH------HHHHHHHHh
Confidence 35677777777666656555566666789999999999999999999999988876 6787776 469999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCC--CccHHHHHHHHHHHHHHhhchhccCCCCcchhH
Q 015496 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS--SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLF 303 (405)
Q Consensus 226 ~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~--~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l 303 (405)
.+++..+. +++..|+.-.- - .+++.--+.+++.+|+.+ ..+..++++++-.+-|+|.-- .++.....+
T Consensus 343 ~dp~~~~~-e~~~~L~~ttF--V----~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lv---eDp~~lapf 412 (569)
T KOG1242|consen 343 ADPSCYTP-ECLDSLGATTF--V----AEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLV---EDPKDLAPF 412 (569)
T ss_pred cCcccchH-HHHHhhcceee--e----eeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhh---cCHHHHhhh
Confidence 88763322 24444443211 0 122233445555555422 013456899999999999631 222211111
Q ss_pred HhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496 304 RDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (405)
Q Consensus 304 ~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~ 337 (405)
. ..++|.+=..+...++++|+.+.+||+.+...
T Consensus 413 l-~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~ 445 (569)
T KOG1242|consen 413 L-PSLLPGLKENLDDAVPEVRAVAARALGALLER 445 (569)
T ss_pred H-HHHhhHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 1 12444454555556899999999999888753
No 105
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.22 E-value=1.3 Score=47.27 Aligned_cols=105 Identities=16% Similarity=0.081 Sum_probs=82.2
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 015496 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (405)
Q Consensus 175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f 254 (405)
.+..+.++|.++..+-|..+..-|..+-.+.| .|-.+.....++.|++-|++.++++..+++.-++++|.+...-
T Consensus 337 ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p-~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~---- 411 (675)
T KOG0212|consen 337 IIEVLTKYLSDDREETRIAVLNWIILLYHKAP-GQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSP---- 411 (675)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHhhCc-chhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccc----
Confidence 36677889999999999999999998887655 6666777789999999999999999999999999999874331
Q ss_pred HhcCcHHHHHHhh---cCCCccHHHHHHHHHHHHHHhh
Q 015496 255 YVEAGDLMLQDIL---GNSSFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 255 ~~~gGi~~L~~lL---~s~~~~~kl~~kA~~lLs~L~~ 289 (405)
|-.+.+..+| +.+ ..-+..++.+.+..||.
T Consensus 412 ---~~~~fl~sLL~~f~e~--~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 412 ---NLRKFLLSLLEMFKED--TKLLEVRGNLIIRQLCL 444 (675)
T ss_pred ---cHHHHHHHHHHHHhhh--hHHHHhhhhHHHHHHHH
Confidence 2234444443 443 34578889999999995
No 106
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=95.12 E-value=0.58 Score=52.45 Aligned_cols=176 Identities=19% Similarity=0.152 Sum_probs=101.5
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCH-HHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhH
Q 015496 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGL-SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ 209 (405)
Q Consensus 131 ~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi-~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q 209 (405)
.+..+.+..+.++..+..-|.-|+-.|-++=... +.....++ ..+++.+++++++++..|+.+||+++.+|-
T Consensus 817 s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~----~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl--- 889 (1233)
T KOG1824|consen 817 SLATKLIQDLQSPKSSDSIKVFALLSLGELGRRK----DLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNL--- 889 (1233)
T ss_pred hHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCC----CCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCch---
Confidence 3445555666666666677778877777653333 22233333 366789999999999999999999999764
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-ChhhHHHHH--hcCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 015496 210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN-NLAGQEMFY--VEAGDLMLQDILGNSSFEIRLHRKAVSLVGD 286 (405)
Q Consensus 210 ~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~-~~~~~~~f~--~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~ 286 (405)
...+|.+++.+.+.... +.--+.++=-.+.. ... .|. -...|.+|.+-..+. ....|.-.+-++.-
T Consensus 890 -----~~yLpfil~qi~sqpk~-QyLLLhSlkevi~~~svd---~~~~~v~~IW~lL~k~cE~~--eegtR~vvAECLGk 958 (1233)
T KOG1824|consen 890 -----PKYLPFILEQIESQPKR-QYLLLHSLKEVIVSASVD---GLKPYVEKIWALLFKHCECA--EEGTRNVVAECLGK 958 (1233)
T ss_pred -----HhHHHHHHHHHhcchHh-HHHHHHHHHHHHHHhccc---hhhhhHHHHHHHHHHhcccc--hhhhHHHHHHHhhh
Confidence 24678888887764321 22222222222211 111 111 123455555444432 33446666666776
Q ss_pred HhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496 287 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (405)
Q Consensus 287 L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~ 337 (405)
|+-. +| ..++|.|-..+.++++..+-.++.++......
T Consensus 959 L~l~-----ep--------esLlpkL~~~~~S~a~~~rs~vvsavKfsisd 996 (1233)
T KOG1824|consen 959 LVLI-----EP--------ESLLPKLKLLLRSEASNTRSSVVSAVKFSISD 996 (1233)
T ss_pred HHhC-----Ch--------HHHHHHHHHHhcCCCcchhhhhhheeeeeecC
Confidence 6632 22 34566666666666666666666666655543
No 107
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=95.01 E-value=1.2 Score=44.03 Aligned_cols=124 Identities=20% Similarity=0.260 Sum_probs=91.7
Q ss_pred CHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCH------------HHHHHHHHHHH
Q 015496 175 GLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV------------EEAVKALYTVS 241 (405)
Q Consensus 175 gi~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~------------~v~~kAl~ALS 241 (405)
.+++++.+|. +++..+|..|+++|+.+-.- .++.+|+.++.++.. .++..++.+++
T Consensus 106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~ 174 (335)
T COG1413 106 AVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALG 174 (335)
T ss_pred HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHH
Confidence 5889999998 69999999999999987753 347888888887551 34556666666
Q ss_pred HHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCCh
Q 015496 242 SLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADL 321 (405)
Q Consensus 242 ~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~ 321 (405)
.+- .+ ..++.|...+.+. +..+|..|+..+..+..+ + ..+...+...+..++.
T Consensus 175 ~~~--~~---------~~~~~l~~~l~~~--~~~vr~~Aa~aL~~~~~~-----~---------~~~~~~l~~~~~~~~~ 227 (335)
T COG1413 175 ELG--DP---------EAIPLLIELLEDE--DADVRRAAASALGQLGSE-----N---------VEAADLLVKALSDESL 227 (335)
T ss_pred HcC--Ch---------hhhHHHHHHHhCc--hHHHHHHHHHHHHHhhcc-----h---------hhHHHHHHHHhcCCCH
Confidence 551 22 3567888888876 346888999888887632 1 3566778888888888
Q ss_pred HHHHHHHHHHHHHhc
Q 015496 322 DLQEKALAAIKNLLQ 336 (405)
Q Consensus 322 ~v~E~al~aL~~L~~ 336 (405)
.++..++.+|+.+-.
T Consensus 228 ~vr~~~~~~l~~~~~ 242 (335)
T COG1413 228 EVRKAALLALGEIGD 242 (335)
T ss_pred HHHHHHHHHhcccCc
Confidence 999888888777654
No 108
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.96 E-value=0.047 Score=35.25 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=26.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 015496 218 LSKLMKMVKSSFVEEAVKALYTVSSLIRN 246 (405)
Q Consensus 218 lp~Ll~LL~s~~~~v~~kAl~ALS~lir~ 246 (405)
+|.++++++++++.||..|+++|+.++++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 79999999999999999999999999875
No 109
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=94.89 E-value=1.3 Score=49.93 Aligned_cols=153 Identities=15% Similarity=0.123 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhh
Q 015496 188 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL 267 (405)
Q Consensus 188 ~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL 267 (405)
..++..++.+++...++-...--. ...+.+..++--+.+.-..+|+||+++||.++-..+ ...|. +.++.|.+-|
T Consensus 147 sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~--~~ly~--~li~~Ll~~L 221 (1233)
T KOG1824|consen 147 SAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN--RDLYV--ELIEHLLKGL 221 (1233)
T ss_pred hhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC--HHHHH--HHHHHHHhcc
Confidence 447777777777776652222111 223445555555666667899999999999876533 22222 3456666666
Q ss_pred cCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh--CCcHHHHHHhc---cCCChHHHHHHHHHHHHHhcCChhhH
Q 015496 268 GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD--RFFLKSVVDLT---ASADLDLQEKALAAIKNLLQLRTTEA 342 (405)
Q Consensus 268 ~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~--~g~l~~Lv~LL---~~~D~~v~E~al~aL~~L~~~~~~~~ 342 (405)
... +.....+--..+|..+|+.. .. .+-. ..+++.+++.. ..+|.+++|.++.++..++.. |+
T Consensus 222 ~~~-~q~~~~rt~Iq~l~~i~r~a----g~----r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~r---cp 289 (1233)
T KOG1824|consen 222 SNR-TQMSATRTYIQCLAAICRQA----GH----RFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRR---CP 289 (1233)
T ss_pred CCC-CchHHHHHHHHHHHHHHHHh----cc----hhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHh---Ch
Confidence 654 23334445667788888752 21 2222 35677777777 677999999999999998854 44
Q ss_pred HHHHhcCCchHHHHHHH
Q 015496 343 LVLKDFCGLDTALERLR 359 (405)
Q Consensus 343 ~~v~~~~Gl~~~L~~L~ 359 (405)
+.+. .-.+..+..+.
T Consensus 290 ~ei~--p~~pei~~l~l 304 (1233)
T KOG1824|consen 290 KEIL--PHVPEIINLCL 304 (1233)
T ss_pred hhhc--ccchHHHHHHH
Confidence 4443 22334444444
No 110
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=94.71 E-value=0.35 Score=47.02 Aligned_cols=100 Identities=18% Similarity=0.085 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc
Q 015496 149 DSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK 226 (405)
Q Consensus 149 ~k~~AL~~L~~Lve-~iDnA~~~~~~Ggi~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~ 226 (405)
....||+.|+-++- ..+...-|...+++..|+.+|+ +..+.++..+..+|-.+.-.+|.++..|-+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 45668899988663 4567778899999999999995 567999999999999999999999999999999999999999
Q ss_pred CCC--HHHHHHHHHHHHHHhcCCh
Q 015496 227 SSF--VEEAVKALYTVSSLIRNNL 248 (405)
Q Consensus 227 s~~--~~v~~kAl~ALS~lir~~~ 248 (405)
+.+ .+++.|.+--|--.+..-.
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~~E~ 210 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLMPET 210 (257)
T ss_pred cccccHHHhHHHHHHHHHHHcccC
Confidence 865 4677777666655554433
No 111
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=94.70 E-value=0.16 Score=46.03 Aligned_cols=92 Identities=23% Similarity=0.298 Sum_probs=69.6
Q ss_pred HHHHHHHHcc--CCCCchhHHHhcCCHHHHHHhcCC---------CCHHHHHHHHHHHHHHhcCChHhHHHHHH-cCcHH
Q 015496 152 RALQELLILV--EPIDNANDLSKLGGLSVLVGQLNH---------PDTDIRKISAWILGKASQNNPLVQKQVLE-LGALS 219 (405)
Q Consensus 152 ~AL~~L~~Lv--e~iDnA~~~~~~Ggi~~Lv~lL~s---------~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle-~G~lp 219 (405)
..+..|+..+ .+++....|+..||+..|+.+|.. .+..+...+..||-.+. |++.....+++ .+++.
T Consensus 83 ~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~-n~~~G~~~v~~~~~~v~ 161 (187)
T PF06371_consen 83 KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM-NTKYGLEAVLSHPDSVN 161 (187)
T ss_dssp HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT-SSHHHHHHHHCSSSHHH
T ss_pred HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH-ccHHHHHHHHcCcHHHH
Confidence 3444444433 456788999999999999988852 34578999999998888 66777777776 58999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHh
Q 015496 220 KLMKMVKSSFVEEAVKALYTVSSLI 244 (405)
Q Consensus 220 ~Ll~LL~s~~~~v~~kAl~ALS~li 244 (405)
.|+..|.+++..++..++.-|+.+|
T Consensus 162 ~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 162 LIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999988888775
No 112
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.69 E-value=0.99 Score=44.90 Aligned_cols=188 Identities=19% Similarity=0.140 Sum_probs=108.7
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHh--cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHH
Q 015496 136 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK--LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVL 213 (405)
Q Consensus 136 al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~--~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vl 213 (405)
..+.+.+. ++..+..|.+++..+.-. .-..+.+ .-.++.+.+++....+ -..|+.++.|++|+ +..++.++
T Consensus 8 lv~ll~~~--sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~ll 80 (353)
T KOG2973|consen 8 LVELLHSL--SPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKKLL 80 (353)
T ss_pred HHHHhccC--ChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHHHH
Confidence 34455444 457777888888877644 1112221 1245667777776555 66899999999995 88999998
Q ss_pred HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc-----CcHHHHHHhhcCCCcc--HHHHHHHHHHHHH
Q 015496 214 ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE-----AGDLMLQDILGNSSFE--IRLHRKAVSLVGD 286 (405)
Q Consensus 214 e~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~-----gGi~~L~~lL~s~~~~--~kl~~kA~~lLs~ 286 (405)
.. .+..++.++.++......-.+-.|+|+.|............ .|+.-+...+-+++.+ .. -...+..+.|
T Consensus 81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~-f~ylA~vf~n 158 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAE-FHYLAPVFAN 158 (353)
T ss_pred HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccc-hhHHHHHHHH
Confidence 88 88888888888766666778888999998865544433321 3544444444322122 11 1235667777
Q ss_pred HhhchhccCCCCcchhHHhCC--cHHHHHHhccCCChHHH-HHHHHHHHHHhcCCh
Q 015496 287 LAKCQLENMHKVEPPLFRDRF--FLKSVVDLTASADLDLQ-EKALAAIKNLLQLRT 339 (405)
Q Consensus 287 L~~~~~~~~~~~~~~~l~~~g--~l~~Lv~LL~~~D~~v~-E~al~aL~~L~~~~~ 339 (405)
|.+. +.-+..+.+.. ..+.+.. +.+.|..+| .-++..|.|.+-...
T Consensus 159 ls~~------~~gR~l~~~~k~~p~~kll~-ft~~~s~vRr~GvagtlkN~cFd~~ 207 (353)
T KOG2973|consen 159 LSQF------EAGRKLLLEPKRFPDQKLLP-FTSEDSQVRRGGVAGTLKNCCFDAK 207 (353)
T ss_pred Hhhh------hhhhhHhcchhhhhHhhhhc-ccccchhhhccchHHHHHhhhccch
Confidence 7653 22333343332 2222222 233444444 344555566554433
No 113
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.60 E-value=4.6 Score=44.81 Aligned_cols=182 Identities=16% Similarity=0.122 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHhcCCH---------------HHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHH
Q 015496 148 EDSQRALQELLILVEPIDNANDLSKLGGL---------------SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV 212 (405)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi---------------~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~v 212 (405)
.-++.|...|..++-+-||=-..+.+.++ ..++.||+.+++.||..|...+..++-. ..++.
T Consensus 309 ~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~-~Nv~~-- 385 (866)
T KOG1062|consen 309 GLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNE-SNVRV-- 385 (866)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc-ccHHH--
Confidence 34555666666665555542222222222 3567899999999999999999988842 22332
Q ss_pred HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH--------------hcCcHHHHHHhhcCC--------
Q 015496 213 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY--------------VEAGDLMLQDILGNS-------- 270 (405)
Q Consensus 213 le~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~--------------~~gGi~~L~~lL~s~-------- 270 (405)
.+..|+..|.+.++..+....+-|.-++.-+.|....|+ ....+.-++.++.+.
T Consensus 386 ----mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~ 461 (866)
T KOG1062|consen 386 ----MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYA 461 (866)
T ss_pred ----HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHH
Confidence 356788888887778888888888877777655433332 112344455554432
Q ss_pred ---------------CccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC--ChHHHHHHHHHHHH
Q 015496 271 ---------------SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKN 333 (405)
Q Consensus 271 ---------------~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~--D~~v~E~al~aL~~ 333 (405)
-....+..-+.|+|.---.--+...+.+....+.+..++..+-+++.+. +..++..++.||..
T Consensus 462 ~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~K 541 (866)
T KOG1062|consen 462 VLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLK 541 (866)
T ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 1233455566676654321000011122222344456777777777654 67777888888877
Q ss_pred Hhc
Q 015496 334 LLQ 336 (405)
Q Consensus 334 L~~ 336 (405)
|..
T Consensus 542 LSs 544 (866)
T KOG1062|consen 542 LSS 544 (866)
T ss_pred HHh
Confidence 764
No 114
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.57 E-value=0.77 Score=50.17 Aligned_cols=33 Identities=21% Similarity=0.406 Sum_probs=29.4
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH
Q 015496 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPL 207 (405)
Q Consensus 175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~ 207 (405)
.+|.|+.=|..++|.|+..|..+|+.+|.-||+
T Consensus 182 ~FprL~EkLeDpDp~V~SAAV~VICELArKnPk 214 (877)
T KOG1059|consen 182 CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQ 214 (877)
T ss_pred hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCc
Confidence 478888888999999999999999999998883
No 115
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.53 E-value=1.4 Score=40.14 Aligned_cols=90 Identities=21% Similarity=0.213 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCc--HHHHH
Q 015496 187 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--DLMLQ 264 (405)
Q Consensus 187 ~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gG--i~~L~ 264 (405)
++.||..+.-++|-++..-|..-+ ..+|.+...|+++++.+|..|+..|+.++.+. +++..| +..+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d------~ik~k~~l~~~~l 69 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILED------MIKVKGQLFSRIL 69 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC------ceeehhhhhHHHH
Confidence 578999999999999987765444 45799999999999999999999999998763 222222 25666
Q ss_pred HhhcCCCccHHHHHHHHHHHHHHhh
Q 015496 265 DILGNSSFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 265 ~lL~s~~~~~kl~~kA~~lLs~L~~ 289 (405)
.++.++ +..++.-|..++..+..
T Consensus 70 ~~l~D~--~~~Ir~~A~~~~~e~~~ 92 (178)
T PF12717_consen 70 KLLVDE--NPEIRSLARSFFSELLK 92 (178)
T ss_pred HHHcCC--CHHHHHHHHHHHHHHHH
Confidence 677665 67899999999999985
No 116
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.51 E-value=4.5 Score=41.87 Aligned_cols=192 Identities=20% Similarity=0.227 Sum_probs=115.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHH-----HH
Q 015496 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWIL-----GK 200 (405)
Q Consensus 127 ~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL-~s~~~~Ir~~Aa~~L-----g~ 200 (405)
|+..+++...++...+.. ++..+..+++.+.-++........+.+ .+..+..-+ ....++.+..+..++ |-
T Consensus 185 ~~~~~ll~~l~~~~~~~~-~~~~~~~~~~~la~LvNK~~~~~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaL 261 (415)
T PF12460_consen 185 PDLEELLQSLLNLALSSE-DEFSRLAALQLLASLVNKWPDDDDLDE--FLDSLLQSISSSEDSELRPQALEILIWITKAL 261 (415)
T ss_pred cCHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHcCCCChhhHHH--HHHHHHhhhcccCCcchhHHHHHHHHHHHHHH
Confidence 444567777777766654 356777788877777755433222221 123333322 233444444444444 33
Q ss_pred HhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh--------HHHHHhc----CcHHHHHHhhc
Q 015496 201 ASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG--------QEMFYVE----AGDLMLQDILG 268 (405)
Q Consensus 201 ~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~--------~~~f~~~----gGi~~L~~lL~ 268 (405)
+..|+|...+ .+..|++++.+ +++...|.-+++-++.+.+.. .+.+++. --++.|++..+
T Consensus 262 v~R~~~~~~~------~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~ 333 (415)
T PF12460_consen 262 VMRGHPLATE------LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFK 333 (415)
T ss_pred HHcCCchHHH------HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHh
Confidence 4456665544 45779999987 445566666666666663331 2222221 24566666666
Q ss_pred CCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh--CCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015496 269 NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD--RFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (405)
Q Consensus 269 s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~--~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~ 338 (405)
.. +...|..-..+++++..+ .+. +.+.. ..++|-|++.|..+|.+++..++.+|..++...
T Consensus 334 ~~--~~~~k~~yL~ALs~ll~~----vP~---~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 334 EA--DDEIKSNYLTALSHLLKN----VPK---SVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hc--ChhhHHHHHHHHHHHHhh----CCH---HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 54 223677888899999864 221 12222 268999999999999999999999999999764
No 117
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.23 E-value=0.44 Score=43.38 Aligned_cols=91 Identities=12% Similarity=0.107 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCc-
Q 015496 230 VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFF- 308 (405)
Q Consensus 230 ~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~- 308 (405)
+.+|..++-++|-++.-+|...+.+ ++.+..+|+++ ++.+|+.|+..+++|..+ + .+.-.|-
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~~-----~~~l~~~L~D~--~~~VR~~al~~Ls~Li~~-----d-----~ik~k~~l 64 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEPY-----LPNLYKCLRDE--DPLVRKTALLVLSHLILE-----D-----MIKVKGQL 64 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhH-----HHHHHHHHCCC--CHHHHHHHHHHHHHHHHc-----C-----ceeehhhh
Confidence 5689999999999988888776655 58888999987 678999999999999863 1 1222233
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496 309 LKSVVDLTASADLDLQEKALAAIKNLLQL 337 (405)
Q Consensus 309 l~~Lv~LL~~~D~~v~E~al~aL~~L~~~ 337 (405)
+..++.+|..+|++++..|..++..+...
T Consensus 65 ~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 65 FSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 37788888888999999999999998864
No 118
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=94.22 E-value=4.8 Score=40.69 Aligned_cols=149 Identities=17% Similarity=0.123 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC---cHHHH
Q 015496 187 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA---GDLML 263 (405)
Q Consensus 187 ~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~g---Gi~~L 263 (405)
++++=-.+-.+|..++.. +..-+.++....+-.+.+.+..++=++..-|...+-.+...|+.....|+..+ -+...
T Consensus 136 ~~dial~~g~mlRec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~ 214 (335)
T PF08569_consen 136 NPDIALNCGDMLRECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKY 214 (335)
T ss_dssp STTTHHHHHHHHHHHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHH
T ss_pred CccccchHHHHHHHHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555553 44555566666666777777776767788889999998888888888888765 35677
Q ss_pred HHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcc-hhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhh
Q 015496 264 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP-PLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTE 341 (405)
Q Consensus 264 ~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~-~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~ 341 (405)
..+|.++ +.=.|+.++-+|+.|.... .+-... ..+.+..-++.++.+|++....+|-.|-....-.+..+...
T Consensus 215 ~~Ll~s~--NYvtkrqslkLL~ellldr---~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~ 288 (335)
T PF08569_consen 215 NKLLESS--NYVTKRQSLKLLGELLLDR---SNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKP 288 (335)
T ss_dssp HHHCT-S--SHHHHHHHHHHHHHHHHSG---GGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-B
T ss_pred HHHccCC--CeEeehhhHHHHHHHHHch---hHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCC
Confidence 7888886 5668999999999998531 222222 23345578899999999999999999999999888876543
No 119
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=94.12 E-value=1.6 Score=44.91 Aligned_cols=83 Identities=14% Similarity=0.118 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc-CC---CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHH
Q 015496 187 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SS---FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 262 (405)
Q Consensus 187 ~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~-s~---~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~ 262 (405)
-+.|=..|+.++.+...|.|.+-..+.+.|.++.+++-+. .+ +.++-...-.+|++||= |..+.++|.+.+.++.
T Consensus 122 G~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~ 200 (379)
T PF06025_consen 122 GPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDK 200 (379)
T ss_pred chHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHH
Confidence 4889999999999999999999999999999999999888 33 23444445566666765 5688999999999999
Q ss_pred HHHhhcCC
Q 015496 263 LQDILGNS 270 (405)
Q Consensus 263 L~~lL~s~ 270 (405)
+.+++.++
T Consensus 201 ~f~if~s~ 208 (379)
T PF06025_consen 201 LFEIFTSP 208 (379)
T ss_pred HHHHhCCH
Confidence 99998765
No 120
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=94.02 E-value=2.1 Score=41.63 Aligned_cols=196 Identities=14% Similarity=0.098 Sum_probs=124.0
Q ss_pred CHHHHHHHHHHHHHccCCCC-chhHHHh-cCCHHHHHH-------hcCCCC--H---HHHHHHHHHHHHHhcCChHhHHH
Q 015496 146 SLEDSQRALQELLILVEPID-NANDLSK-LGGLSVLVG-------QLNHPD--T---DIRKISAWILGKASQNNPLVQKQ 211 (405)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iD-nA~~~~~-~Ggi~~Lv~-------lL~s~~--~---~Ir~~Aa~~Lg~~aqNN~~~Q~~ 211 (405)
+++.|+.|+.+|..--+..+ .|--+-. -|.+..|++ .|..++ + .--+.|..++-.+|+ +|+.+..
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence 46889999999998877764 3444444 355666653 222221 2 233455555556666 7999999
Q ss_pred HHHcCcHHHHHHhhcCCC-----HHHHHHHHHHHHHHhcCC-hhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015496 212 VLELGALSKLMKMVKSSF-----VEEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG 285 (405)
Q Consensus 212 vle~G~lp~Ll~LL~s~~-----~~v~~kAl~ALS~lir~~-~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs 285 (405)
|++.+..-.|...|+..+ +-+|-.++..||++++.+ ++....+.....++...+.+..+ +...|.-|.|.+.
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G--selSKtvAtfIlq 164 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG--SELSKTVATFILQ 164 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS---HHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc--cHHHHHHHHHHHH
Confidence 999987766667776543 346889999999999974 55666667788999999999876 4557888999998
Q ss_pred HHhhch--hccCCCCcchhHHh-CCcHHHHHH-hccCCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 015496 286 DLAKCQ--LENMHKVEPPLFRD-RFFLKSVVD-LTASADLDLQEKALAAIKNLLQLRTTEALVLK 346 (405)
Q Consensus 286 ~L~~~~--~~~~~~~~~~~l~~-~g~l~~Lv~-LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~ 346 (405)
-+.... +.-. =...+.|.. ..++..++. +...+++.+..++.++-..|++++. .+..++
T Consensus 165 KIL~dd~GL~yi-C~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr-ar~aL~ 227 (262)
T PF04078_consen 165 KILLDDVGLNYI-CQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR-AREALR 227 (262)
T ss_dssp HHHHSHHHHHHH-TSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT-HHHHHH
T ss_pred HHHcchhHHHHH-hcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH-HHHHHH
Confidence 887531 0000 011122221 234444444 3455688999999999999988643 444443
No 121
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=93.99 E-value=4.5 Score=39.21 Aligned_cols=202 Identities=17% Similarity=0.122 Sum_probs=129.1
Q ss_pred CChHHHHHHHhhcCCCccccchhh---ccCCCCHHHHHHhHHHHHHHHHHcCCCCHHHHHHHHHHHhhc---CCCCH---
Q 015496 77 SSIDGMLQWAIGHSDPAKLKETAQ---DVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNN---STLSL--- 147 (405)
Q Consensus 77 ~~l~~LLkwsi~~s~~~~~~~~~~---~~~~~s~e~l~~r~~~L~~a~~~~~~~~d~~lmk~al~~L~~---~~~t~--- 147 (405)
.+-+++-+|.++-..|++...+-. +.+...++. =-.++.+++. ...+.++.+.+.-. +..++
T Consensus 23 ~~~dk~~~~i~~l~~~p~rE~aL~ELskkre~~~dl-------A~~lW~s~g~--~~~LLqEivaiYp~l~p~~l~~~qs 93 (293)
T KOG3036|consen 23 SNNDKAYQLILSLVSPPTREMALLELSKKREPFPDL-------APMLWHSFGT--MVALLQEIVAIYPSLSPPTLTPAQS 93 (293)
T ss_pred ccccchhhHHHHhhCCchHHHHHHHHHHhccCCccc-------cHHHHHhcch--HHHHHHHHHhcccccCCCCCCcccc
Confidence 345568999999877766321110 111111110 0134565553 45667776665422 21222
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHhcCCh-HhHHHHHHcCcHHHH
Q 015496 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN-----HPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKL 221 (405)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~-----s~~~~Ir~~Aa~~Lg~~aqNN~-~~Q~~vle~G~lp~L 221 (405)
.--..||--|.-++...|....|.+...=-.|-.+|+ .+.+-+|-.|..+||.+++|.+ ++-...+..+.+|..
T Consensus 94 nRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 94 NRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred chHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 2235677777777888999999999875445556664 3578899999999999999754 444445677999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhcCChhh------HHHHHhcCc-H-HHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496 222 MKMVKSSFVEEAVKALYTVSSLIRNNLAG------QEMFYVEAG-D-LMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 222 l~LL~s~~~~v~~kAl~ALS~lir~~~~~------~~~f~~~gG-i-~~L~~lL~s~~~~~kl~~kA~~lLs~L~~ 289 (405)
++....+++.-+.-|.+-+.-|+-+.... .+.|...+- + .++.++.+.+ +.++.+.++.+...|+.
T Consensus 174 Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~p--s~RllKhviRcYlrLsd 247 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMP--SPRLLKHVIRCYLRLSD 247 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhcC
Confidence 99999999888888999999888765432 233433221 1 2333333443 67788888888888773
No 122
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=93.89 E-value=0.21 Score=47.97 Aligned_cols=54 Identities=17% Similarity=0.287 Sum_probs=43.2
Q ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhHH-HHHHcCcHHHHHHhhcCCC
Q 015496 176 LSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQK-QVLELGALSKLMKMVKSSF 229 (405)
Q Consensus 176 i~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~-~vle~G~lp~Ll~LL~s~~ 229 (405)
+..|+++|. ..++-.|+.|.-+|.++++..+.... ...+.+.|..|+..+....
T Consensus 174 ~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~ 229 (257)
T PF12031_consen 174 FHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 445667774 57899999999999999998777664 4467899999999997643
No 123
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.59 E-value=11 Score=39.49 Aligned_cols=179 Identities=17% Similarity=0.125 Sum_probs=128.8
Q ss_pred HHHHHHHHHccCC-CCchhHHHhcCCHHHHHH-hc-CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc-
Q 015496 151 QRALQELLILVEP-IDNANDLSKLGGLSVLVG-QL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK- 226 (405)
Q Consensus 151 ~~AL~~L~~Lve~-iDnA~~~~~~Ggi~~Lv~-lL-~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~- 226 (405)
..++..++++++- .+.+...++.|.+.-|+. +- +.+-...+..|..+++-+-||+.+.+...-..+|+..+++-+.
T Consensus 200 ~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~ 279 (536)
T KOG2734|consen 200 HNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAV 279 (536)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcch
Confidence 4556666666643 245666677777777766 33 3467888999999999999999999999889999999998764
Q ss_pred ---CC----C-HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCC
Q 015496 227 ---SS----F-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV 298 (405)
Q Consensus 227 ---s~----~-~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~ 298 (405)
.+ + .+.-+...-+||++++. +.++..|++..|++...-+++..+ ..+-.+...|-+...+. ....
T Consensus 280 yk~~dP~~~~E~EmmeNLFdcLCs~lm~-~~nr~~Fl~~EGlqLm~Lmlr~Kk---~sr~SalkvLd~am~g~---~gt~ 352 (536)
T KOG2734|consen 280 YKRHDPATVDEEEMMENLFDCLCSLLMA-PANRERFLKGEGLQLMNLMLREKK---VSRGSALKVLDHAMFGP---EGTP 352 (536)
T ss_pred hhccCCCCcCHHHHHHHHHHHHHHHhcC-hhhhhhhhccccHHHHHHHHHHHH---HhhhhHHHHHHHHHhCC---CchH
Confidence 12 1 23467888899999885 788999999999998877777542 24556777777777542 2224
Q ss_pred cchhHHhCCcHHHHHHhcc-C---------CChHHHHHHHHHHHHHhc
Q 015496 299 EPPLFRDRFFLKSVVDLTA-S---------ADLDLQEKALAAIKNLLQ 336 (405)
Q Consensus 299 ~~~~l~~~g~l~~Lv~LL~-~---------~D~~v~E~al~aL~~L~~ 336 (405)
.+..|++...++.+..+.. . .-.+.-|+.+..|.++..
T Consensus 353 ~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 353 NCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 5667788777777665533 1 234677899988888775
No 124
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.59 E-value=5.6 Score=40.17 Aligned_cols=198 Identities=16% Similarity=0.155 Sum_probs=132.1
Q ss_pred HHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHccCCCC-ch----hHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 015496 130 AQLIQIAIDDLNNSTL--SLEDSQRALQELLILVEPID-NA----NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKAS 202 (405)
Q Consensus 130 ~~lmk~al~~L~~~~~--t~e~k~~AL~~L~~Lve~iD-nA----~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~a 202 (405)
+.+....+-+|.-.-. +...|.-++..+-.++|+-| |+ ...++.|.++.++.++-..+.++-..|...|..++
T Consensus 77 ahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikria 156 (524)
T KOG4413|consen 77 AHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIA 156 (524)
T ss_pred hhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 4444455555544322 33467788888888999887 33 34567888999999999999999999999999998
Q ss_pred cCChHhHHHHHHcCcHHHHH--HhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHH
Q 015496 203 QNNPLVQKQVLELGALSKLM--KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKA 280 (405)
Q Consensus 203 qNN~~~Q~~vle~G~lp~Ll--~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA 280 (405)
- .|..-+.+++...+..+- .+...-++-+|...+.-|--+-.-++......-+.|-+..|..=|+.. .|.-++.++
T Consensus 157 l-fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGt-eDtLVianc 234 (524)
T KOG4413|consen 157 L-FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGT-EDTLVIANC 234 (524)
T ss_pred h-cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCC-cceeehhhH
Confidence 5 577777777776655432 222222233344444444444444566666777788888888888865 366788899
Q ss_pred HHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHH--HHHHHHHHh
Q 015496 281 VSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEK--ALAAIKNLL 335 (405)
Q Consensus 281 ~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~--al~aL~~L~ 335 (405)
.-+++.|+.. +.-++.+.+.|++..+.+.+...|.+--++ ++.....+.
T Consensus 235 iElvteLaet------eHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkff 285 (524)
T KOG4413|consen 235 IELVTELAET------EHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFF 285 (524)
T ss_pred HHHHHHHHHH------hhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHh
Confidence 9999999852 234557778899999999887654443332 444444444
No 125
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.42 E-value=4.2 Score=40.05 Aligned_cols=167 Identities=15% Similarity=0.087 Sum_probs=104.2
Q ss_pred CCHHHHH-HhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh-H
Q 015496 174 GGLSVLV-GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-Q 251 (405)
Q Consensus 174 Ggi~~Lv-~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~-~ 251 (405)
+.+..|| ..+.++++.||..|..++|-++-=+.+.-.. .++.+...++.+++.++..|+.+|.-++--|... .
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 4566665 7889999999999999999999766544332 4688888887778899999999999877665422 1
Q ss_pred HHHHh-------cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh-CCcHHHHHHhccC----C
Q 015496 252 EMFYV-------EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD-RFFLKSVVDLTAS----A 319 (405)
Q Consensus 252 ~~f~~-------~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~-~g~l~~Lv~LL~~----~ 319 (405)
+.... ..-+..+.+.+.+. +..++.-|+--+.-|.-.. .+.+ ..++..|+-+--+ +
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~a~EGl~KLlL~~----------~i~~~~~vL~~Lll~yF~p~t~~ 168 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSE--NPELQAIAVEGLCKLLLSG----------RISDPPKVLSRLLLLYFNPSTED 168 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHhcC----------CCCcHHHHHHHHHHHHcCcccCC
Confidence 11111 23456777777776 5668888888888876431 1222 3444454443222 2
Q ss_pred ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHH
Q 015496 320 DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 359 (405)
Q Consensus 320 D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~ 359 (405)
+..++..--..+-..+..+..+...+. .+..|.+..+-
T Consensus 169 ~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~--~~f~~~l~~~~ 206 (298)
T PF12719_consen 169 NQRLRQCLSVFFPVYASSSPENQERLA--EAFLPTLRTLS 206 (298)
T ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHH--HHHHHHHHHHH
Confidence 445555544445555555444444443 33334444443
No 126
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=93.38 E-value=0.6 Score=48.98 Aligned_cols=142 Identities=15% Similarity=0.112 Sum_probs=94.2
Q ss_pred HhcCChhhHHHHHhcCcHHHHHHhh--------cCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHH
Q 015496 243 LIRNNLAGQEMFYVEAGDLMLQDIL--------GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD 314 (405)
Q Consensus 243 lir~~~~~~~~f~~~gGi~~L~~lL--------~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~ 314 (405)
+.|+ +.+.+.++...|+..|..+- .....+..+.+.|..+|.|+... ++..+..+.+.|+.+.+++
T Consensus 8 LsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~-----s~~aR~~~~~~~~~~~l~~ 81 (446)
T PF10165_consen 8 LSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFL-----SPSARQIFVDLGLAEKLCE 81 (446)
T ss_pred HccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhC-----CHHHHHHHHHcCcHHHHHH
Confidence 3343 34555555556666666654 11224678899999999999974 5677888999999999999
Q ss_pred hccCC-----ChHHHHHHHHHHHHHhcCChhhHHHHHhc-CCchHHHHHHHHHHHHhhhch--------hhhhhHHHHHH
Q 015496 315 LTASA-----DLDLQEKALAAIKNLLQLRTTEALVLKDF-CGLDTALERLRQQLQEVMLEE--------DQRDYAMDVEA 380 (405)
Q Consensus 315 LL~~~-----D~~v~E~al~aL~~L~~~~~~~~~~v~~~-~Gl~~~L~~L~~~~~~l~~~~--------~q~~~~~d~~~ 380 (405)
.|+.. +.++.=-.++.|.-++....+.+..+.++ .|+.-....|..+++...... .+.+.+ .|.
T Consensus 82 ~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l--~Ei 159 (446)
T PF10165_consen 82 RLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEAL--SEI 159 (446)
T ss_pred HHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHH--HHH
Confidence 99886 77888888888888887766766665545 566556666766665433311 233333 555
Q ss_pred HHHHHHHHHhhh
Q 015496 381 LRREVELIFFRK 392 (405)
Q Consensus 381 l~~e~~~~~~~k 392 (405)
|+-...++.+..
T Consensus 160 LKllFNit~~~~ 171 (446)
T PF10165_consen 160 LKLLFNITLHYP 171 (446)
T ss_pred HHHHHHhhhccC
Confidence 555555554444
No 127
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=93.37 E-value=1.2 Score=41.22 Aligned_cols=145 Identities=14% Similarity=0.071 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHhcC-ChHhHH----HHH------HcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 015496 189 DIRKISAWILGKASQN-NPLVQK----QVL------ELGALSKLMKM-VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV 256 (405)
Q Consensus 189 ~Ir~~Aa~~Lg~~aqN-N~~~Q~----~vl------e~G~lp~Ll~L-L~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~ 256 (405)
.+|..|..+|..++++ .++.-- .++ ..+.-+.|+.+ +.++++.+|..|+.+|+.+..+..+....--+
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 3799999999999998 332110 011 11234445544 45566789999999999999886553333222
Q ss_pred cC-------------------cHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhcc
Q 015496 257 EA-------------------GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA 317 (405)
Q Consensus 257 ~g-------------------Gi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~ 317 (405)
.. --..|...|+..+ +..+....+-++..|+.. .+.......+. ..++..+..++.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~-~~~~l~q~lK~la~Lv~~---tPY~rL~~~ll-~~~v~~v~~~l~ 155 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEK-SPPVLTQLLKCLAVLVQA---TPYHRLPPGLL-TEVVTQVRPLLR 155 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHcc---CChhhcCHhHH-HHHHHHHHHHHh
Confidence 22 1234555566553 445667788888888764 12222222221 124445556677
Q ss_pred CCChHHHHHHHHHHHHHhcCC
Q 015496 318 SADLDLQEKALAAIKNLLQLR 338 (405)
Q Consensus 318 ~~D~~v~E~al~aL~~L~~~~ 338 (405)
+.|++++..++.+++.+++..
T Consensus 156 ~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 156 HRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred cCCCcHHHHHHHHHHHHHcCC
Confidence 899999999999999998653
No 128
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.24 E-value=1 Score=37.25 Aligned_cols=93 Identities=12% Similarity=-0.029 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCC
Q 015496 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 270 (405)
Q Consensus 191 r~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~ 270 (405)
|..+...|+.++..-++.-...+ .-.+|+++..+.+++..+|..|+-+|.++++......-.+ -...++.|.+++.++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~-f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPY-FNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCC
Confidence 55667777777666554432222 2578999999999999999999999999988754322111 135778888888876
Q ss_pred CccHHHHHHHHHHHHHHh
Q 015496 271 SFEIRLHRKAVSLVGDLA 288 (405)
Q Consensus 271 ~~~~kl~~kA~~lLs~L~ 288 (405)
+..+|. ++.++-.|.
T Consensus 81 --d~~Vr~-~a~~Ld~ll 95 (97)
T PF12755_consen 81 --DENVRS-AAELLDRLL 95 (97)
T ss_pred --chhHHH-HHHHHHHHh
Confidence 555554 556666554
No 129
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.17 E-value=11 Score=42.96 Aligned_cols=121 Identities=15% Similarity=0.172 Sum_probs=79.6
Q ss_pred HHHHHHHHhhc------CCCCHHHHHHHHHHHHHccCCC----CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 015496 132 LIQIAIDDLNN------STLSLEDSQRALQELLILVEPI----DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKA 201 (405)
Q Consensus 132 lmk~al~~L~~------~~~t~e~k~~AL~~L~~Lve~i----DnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~ 201 (405)
.|.=+++++.. +..+.-.|..||..+..+++-+ -.++.+..+ ..+.+...++++.--+|.+|||+++..
T Consensus 411 ~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~f-lv~hVfP~f~s~~g~Lrarac~vl~~~ 489 (1010)
T KOG1991|consen 411 ILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYF-LVNHVFPEFQSPYGYLRARACWVLSQF 489 (1010)
T ss_pred HHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHH-HHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence 34445566662 2234456667776666655333 234444444 566777888999999999999999999
Q ss_pred hcCChHhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 015496 202 SQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFY 255 (405)
Q Consensus 202 aqNN~~~Q~~vle~G~lp~Ll~LL~s-~~~~v~~kAl~ALS~lir~~~~~~~~f~ 255 (405)
+.-+=+.+..+ ..++......+.+ .+-+|+..|..||.+++.+.+.+-.++.
T Consensus 490 ~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~ 542 (1010)
T KOG1991|consen 490 SSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS 542 (1010)
T ss_pred HhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh
Confidence 94322222222 2456667777774 4458999999999999999876644443
No 130
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=92.89 E-value=0.95 Score=44.01 Aligned_cols=168 Identities=17% Similarity=0.131 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHhhcCC---CCH--HHH-HHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC-----CCHHHHHHHHHH
Q 015496 129 DAQLIQIAIDDLNNST---LSL--EDS-QRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH-----PDTDIRKISAWI 197 (405)
Q Consensus 129 d~~lmk~al~~L~~~~---~t~--e~k-~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s-----~~~~Ir~~Aa~~ 197 (405)
.+.+++|.+.+...-+ .+. .++ ..||.-|.-++...|....|.+....-.|..+|+. +.+-+|-.+..+
T Consensus 40 i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGV 119 (262)
T PF04078_consen 40 IAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGV 119 (262)
T ss_dssp HHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHH
Confidence 4567777777764422 233 233 46777777777889999999999887777788863 247799999999
Q ss_pred HHHHhc-CChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhH-------HHHHh-cCcHHHHHHhhc
Q 015496 198 LGKASQ-NNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ-------EMFYV-EAGDLMLQDILG 268 (405)
Q Consensus 198 Lg~~aq-NN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~-------~~f~~-~gGi~~L~~lL~ 268 (405)
||.+++ +++++-..+++...+|..++.+..+++-.+..|.+-+..|+-+. .+. +.|.. ...+..++.-+.
T Consensus 120 IgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd-~GL~yiC~t~eRf~av~~vL~~mV~~l~ 198 (262)
T PF04078_consen 120 IGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDD-VGLNYICQTAERFFAVAMVLNKMVEQLV 198 (262)
T ss_dssp HHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSH-HHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcch-hHHHHHhcCHHHHHHHHHHHHHHHHHHc
Confidence 999998 56778888888999999999999988777888999888887653 332 33332 223443333333
Q ss_pred CCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHH
Q 015496 269 NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (405)
Q Consensus 269 s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~ 304 (405)
.. .+.++.+.++.+..-|+. ++..++.+.
T Consensus 199 ~~-pS~RLLKhIIrCYlRLsd------nprar~aL~ 227 (262)
T PF04078_consen 199 KQ-PSPRLLKHIIRCYLRLSD------NPRAREALR 227 (262)
T ss_dssp HS---HHHHHHHHHHHHHHTT------STTHHHHHH
T ss_pred cC-CChhHHHHHHHHHHHHcc------CHHHHHHHH
Confidence 22 267888888888888874 445555544
No 131
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=92.23 E-value=0.64 Score=51.00 Aligned_cols=152 Identities=17% Similarity=0.136 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHH-HHHHhcCCCCHHHHHHHHHHHHHHhcCC--
Q 015496 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLS-VLVGQLNHPDTDIRKISAWILGKASQNN-- 205 (405)
Q Consensus 129 d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~-~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN-- 205 (405)
-+.+.-..+..|+|. +...+..|++-+..+.--+.+.....-+|-+- .|...|...++++--.-..+|..|+.-.
T Consensus 797 lpqi~stiL~rLnnk--sa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm 874 (1172)
T KOG0213|consen 797 LPQICSTILWRLNNK--SAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGM 874 (1172)
T ss_pred hHHHHHHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccc
Confidence 345566677778876 46778888887777654444443333333332 4567888889998877777666666321
Q ss_pred hHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh---HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015496 206 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG---QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 282 (405)
Q Consensus 206 ~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~---~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~ 282 (405)
.+.+-- -.|.+|.|.-+|++.+..+++..+--++.|+-..++- ++... .-=-|+.+|++. .-.+|+.|..
T Consensus 875 ~km~pP--i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkah--kK~iRRaa~n 947 (1172)
T KOG0213|consen 875 TKMTPP--IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAH--KKEIRRAAVN 947 (1172)
T ss_pred cccCCC--hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHH--HHHHHHHHHh
Confidence 001100 1378999999999999999999999999888776652 22211 111245556654 3458999999
Q ss_pred HHHHHhh
Q 015496 283 LVGDLAK 289 (405)
Q Consensus 283 lLs~L~~ 289 (405)
.+.+++.
T Consensus 948 TfG~Iak 954 (1172)
T KOG0213|consen 948 TFGYIAK 954 (1172)
T ss_pred hhhHHHH
Confidence 9999875
No 132
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=92.11 E-value=1.7 Score=49.61 Aligned_cols=140 Identities=10% Similarity=0.012 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHhcCChHhHHHHHH----cCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHH
Q 015496 188 TDIRKISAWILGKASQNNPLVQKQVLE----LGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 262 (405)
Q Consensus 188 ~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle----~G~lp~Ll~LL~s~-~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~ 262 (405)
.+-...+..+|.|+..-||.....|-. -|.++.+..++... ...++.-|+..++-+ ..|.++...+...|.+..
T Consensus 1739 ~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~-Tan~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1739 ETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLA-TANKECVTDLATCNVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHH-hcccHHHHHHHhhhHHHH
Confidence 445568899999999999977766543 27888888888764 456777788877755 567889999999999999
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC-CChHHHHHHHHHHHHHhcC
Q 015496 263 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS-ADLDLQEKALAAIKNLLQL 337 (405)
Q Consensus 263 L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~-~D~~v~E~al~aL~~L~~~ 337 (405)
|..+|.+- +..|..++-.++.|++ +++....-.++|.+..+.+++-. .+++.+..++..+..|..+
T Consensus 1818 LL~lLHS~---PS~R~~vL~vLYAL~S------~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1818 LLTLLHSQ---PSMRARVLDVLYALSS------NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred HHHHHhcC---hHHHHHHHHHHHHHhc------CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence 99999874 5679999999999984 45666666778888888887755 4778888999988888765
No 133
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.00 E-value=4.2 Score=44.63 Aligned_cols=125 Identities=21% Similarity=0.218 Sum_probs=89.0
Q ss_pred HHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHH
Q 015496 152 RALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVE 231 (405)
Q Consensus 152 ~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~ 231 (405)
.-+-.+-.-.++.|.-++|+. |-+..+++...+++..||+..+.+|+-+.-+|.+.-+.+. .+....++.-+.+-.+.
T Consensus 64 ~fla~fv~sl~q~d~e~DlV~-~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~Drep~ 141 (892)
T KOG2025|consen 64 SFLARFVESLPQLDKEEDLVA-GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLKDREPN 141 (892)
T ss_pred HHHHHHHHhhhccCchhhHHH-HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHhccCch
Confidence 334444445567777888764 6788888888999999999999999999987665555444 46667777667676788
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHH
Q 015496 232 EAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLV 284 (405)
Q Consensus 232 v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lL 284 (405)
||..|+.|||-+-.+ +. -+ +......+..+++++. +..+|+-|+..|
T Consensus 142 VRiqAv~aLsrlQ~d-~~-de---e~~v~n~l~~liqnDp-S~EVRRaaLsnI 188 (892)
T KOG2025|consen 142 VRIQAVLALSRLQGD-PK-DE---ECPVVNLLKDLIQNDP-SDEVRRAALSNI 188 (892)
T ss_pred HHHHHHHHHHHHhcC-CC-CC---cccHHHHHHHHHhcCC-cHHHHHHHHHhh
Confidence 999999999988533 11 11 2345678888888763 566888664433
No 134
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=91.79 E-value=2.5 Score=42.38 Aligned_cols=167 Identities=14% Similarity=0.114 Sum_probs=101.5
Q ss_pred CCCchhHHHhc-CCHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCChHh-HHHHHHcCcHHHHHHhhcCC---CHHHHHHH
Q 015496 163 PIDNANDLSKL-GGLSVLVGQLNH-PDTDIRKISAWILGKASQNNPLV-QKQVLELGALSKLMKMVKSS---FVEEAVKA 236 (405)
Q Consensus 163 ~iDnA~~~~~~-Ggi~~Lv~lL~s-~~~~Ir~~Aa~~Lg~~aqNN~~~-Q~~vle~G~lp~Ll~LL~s~---~~~v~~kA 236 (405)
+...|.++-++ ..+.-|+.+.+. ..+.|-...+.++.+++...|+- -...+-.|-+.+-++.|... +++++ .-
T Consensus 223 ~~~~aqdi~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~-~d 301 (432)
T COG5231 223 SKECAQDIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELV-ID 301 (432)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHH-HH
Confidence 34456555554 345566676654 45777788899999998743321 11122234344445555432 12221 11
Q ss_pred HHHHHH----------------------HhcCChh---------hHHHHHh--cCcHHHHHHhhcCCCccHHHHHHHHHH
Q 015496 237 LYTVSS----------------------LIRNNLA---------GQEMFYV--EAGDLMLQDILGNSSFEIRLHRKAVSL 283 (405)
Q Consensus 237 l~ALS~----------------------lir~~~~---------~~~~f~~--~gGi~~L~~lL~s~~~~~kl~~kA~~l 283 (405)
+.-|-+ +..-+|+ +.+.|.+ +..+..|.+++++...+. ...-|+.=
T Consensus 302 i~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt-~i~vAc~D 380 (432)
T COG5231 302 IERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNT-WICVACSD 380 (432)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCc-eEeeeHhh
Confidence 111111 1111221 4555654 346788888888764332 23347777
Q ss_pred HHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015496 284 VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336 (405)
Q Consensus 284 Ls~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~ 336 (405)
|..+.+ ..|+.+..+.+.|+-..+.++++++|++++=.|+.|+..+..
T Consensus 381 i~~~Vr-----~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 381 IFQLVR-----ASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHH-----hCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 777775 468888899999999999999999999999999999988764
No 135
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.59 E-value=1.5 Score=43.63 Aligned_cols=113 Identities=16% Similarity=0.117 Sum_probs=83.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccC
Q 015496 218 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV--EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (405)
Q Consensus 218 lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~--~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~ 295 (405)
+-.++.++.+.++.++..|+--+.+++.. + .+.|.+ .--++.|.+++... +. .+.|++++.|++.
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~-~~~~~~~~~~~lk~l~qL~~~~--~~--~~~a~~alVnlsq------ 71 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--G-LQSLSKYSEALLKDLTQLLKDL--DP--AEPAATALVNLSQ------ 71 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--c-hhhhccchhhhHHHHHHHccCc--cc--ccHHHHHHHHHHh------
Confidence 45688999999999999999999988765 2 223322 33566677777765 22 5679999999984
Q ss_pred CCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHH
Q 015496 296 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALV 344 (405)
Q Consensus 296 ~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~ 344 (405)
++..+..+.+. +++.++..+..+....-+..+.+|+||++..+.....
T Consensus 72 ~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~l 119 (353)
T KOG2973|consen 72 KEELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAAL 119 (353)
T ss_pred hHHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHH
Confidence 45566666666 8899999988887788888999999999876554433
No 136
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=91.40 E-value=0.66 Score=48.67 Aligned_cols=153 Identities=16% Similarity=0.133 Sum_probs=89.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh----cCChh---hHHHHHh
Q 015496 184 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI----RNNLA---GQEMFYV 256 (405)
Q Consensus 184 ~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~li----r~~~~---~~~~f~~ 256 (405)
+|.+.-++..|.+.++-.+=...--+....-.++...++..+.+..-..|+|+.|++|||. -+-|. .+..|..
T Consensus 401 d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg 480 (728)
T KOG4535|consen 401 DSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG 480 (728)
T ss_pred chHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH
Confidence 3555667888888888777654444444445567777777777666678999999999864 33333 3344432
Q ss_pred cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHh-ccCCChHHHHHHHHHHHHHh
Q 015496 257 EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDL-TASADLDLQEKALAAIKNLL 335 (405)
Q Consensus 257 ~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~L-L~~~D~~v~E~al~aL~~L~ 335 (405)
.--...+.....++.+..|++.++...+.|+.+-- ....+-....+ ..+-+..+... +......++=.++.+++||.
T Consensus 481 ~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvl-q~i~~~~~~e~-~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLf 558 (728)
T KOG4535|consen 481 LLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFL-QPIEKPTFAEI-IEESIQALISTVLTEAAMKVRWNACYAMGNLF 558 (728)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHH-HHhhhccHHHH-HHHHHHhcccceecccccccchHHHHHHHHhh
Confidence 22222333333444456789999999999997421 00001001111 12222222222 23346678888888888888
Q ss_pred cCC
Q 015496 336 QLR 338 (405)
Q Consensus 336 ~~~ 338 (405)
++.
T Consensus 559 kn~ 561 (728)
T KOG4535|consen 559 KNP 561 (728)
T ss_pred cCc
Confidence 764
No 137
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=91.33 E-value=17 Score=38.28 Aligned_cols=187 Identities=16% Similarity=0.151 Sum_probs=111.9
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-ccCCCCchhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChH
Q 015496 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLI-LVEPIDNANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPL 207 (405)
Q Consensus 130 ~~lmk~al~~L~~~~~t~e~k~~AL~~L~~-Lve~iDnA~~~~~~Ggi~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aqNN~~ 207 (405)
..+++..+..+.+.+ ..+++..|+.+|-. ++++--.-++=+....+..+++.|. +.++.+|..|.++|+.++.|-|
T Consensus 285 ~~~v~~~l~~~~g~e-~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~- 362 (516)
T KOG2956|consen 285 SALVADLLKEISGSE-RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP- 362 (516)
T ss_pred hHHHHHHHHhccCcc-chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch-
Confidence 467777777777764 45677778776665 4455333333122223556677775 4889999999999999998744
Q ss_pred hHHHHHHc--CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015496 208 VQKQVLEL--GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG 285 (405)
Q Consensus 208 ~Q~~vle~--G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs 285 (405)
..+.+. =++.++++--.+..+++-.-|.-+++.++..+.|-+. +..+..++.+. |...-.-++-.+.
T Consensus 363 --~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~-------I~~i~~~Ilt~--D~~~~~~~iKm~T 431 (516)
T KOG2956|consen 363 --ARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC-------IVNISPLILTA--DEPRAVAVIKMLT 431 (516)
T ss_pred --HhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH-------HHHHhhHHhcC--cchHHHHHHHHHH
Confidence 223322 3667777777776666655455555544444433322 23344444432 2222223333555
Q ss_pred HHhhchhccCCCCcchhHHh--CCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015496 286 DLAKCQLENMHKVEPPLFRD--RFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336 (405)
Q Consensus 286 ~L~~~~~~~~~~~~~~~l~~--~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~ 336 (405)
-++.. .. .+.+.. ..+.|.+++--.+....+|..|..+|..+..
T Consensus 432 kl~e~----l~---~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 432 KLFER----LS---AEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred HHHhh----cC---HHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 55532 11 112211 3677888888888899999999988888863
No 138
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.13 E-value=22 Score=37.29 Aligned_cols=197 Identities=16% Similarity=0.075 Sum_probs=128.2
Q ss_pred HHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcC-----C----hHhHHHHHHcCcHHH
Q 015496 150 SQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQN-----N----PLVQKQVLELGALSK 220 (405)
Q Consensus 150 k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqN-----N----~~~Q~~vle~G~lp~ 220 (405)
....++.+--+...+|---.|++++|++.|+.+|.|.|.+|-......+-.+.-- + ...-++.++.+.++.
T Consensus 101 Lhd~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaL 180 (536)
T KOG2734|consen 101 LHDIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLAL 180 (536)
T ss_pred HHHHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHH
Confidence 3455667777777888888999999999999999999999999988888877632 1 134456677899999
Q ss_pred HHHhhcCCCHHH------HHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhcc
Q 015496 221 LMKMVKSSFVEE------AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 294 (405)
Q Consensus 221 Ll~LL~s~~~~v------~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~ 294 (405)
|++.+.-=++++ ...++.-+-|++.-.+......++.|-+..|..=+.....-..-+.-|.-.++=+..+
T Consensus 181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~---- 256 (536)
T KOG2734|consen 181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQN---- 256 (536)
T ss_pred HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhcc----
Confidence 999886433222 2345666667776666667777777778877764433211111244455555555532
Q ss_pred CCCCcchhHHhCCcHHHHHHhccC----C-----ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCch
Q 015496 295 MHKVEPPLFRDRFFLKSVVDLTAS----A-----DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLD 352 (405)
Q Consensus 295 ~~~~~~~~l~~~g~l~~Lv~LL~~----~-----D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~ 352 (405)
+ .+.+..+..-..+..++.-+.. + .-++-|..-.+|+.++..+. .+..|...-|+.
T Consensus 257 s-~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~-nr~~Fl~~EGlq 321 (536)
T KOG2734|consen 257 S-DENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPA-NRERFLKGEGLQ 321 (536)
T ss_pred C-chhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChh-hhhhhhccccHH
Confidence 2 2344445555555555554432 1 24577888888888887654 566666466654
No 139
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=91.08 E-value=6.6 Score=42.34 Aligned_cols=100 Identities=17% Similarity=0.177 Sum_probs=59.4
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 015496 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY 255 (405)
Q Consensus 176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~ 255 (405)
+..++.|....+..||..|...|..+|.+||+.-..| ...|++||.+++......+=.+|.++.+.++.+
T Consensus 61 i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~----- 130 (556)
T PF05918_consen 61 INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG----- 130 (556)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH-----
T ss_pred HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH-----
Confidence 4445555555678999999999999999988666655 478999999988766666777888888877653
Q ss_pred hcCcHHHHH-HhhcCCCccHHHHHHHHHHHHHHh
Q 015496 256 VEAGDLMLQ-DILGNSSFEIRLHRKAVSLVGDLA 288 (405)
Q Consensus 256 ~~gGi~~L~-~lL~s~~~~~kl~~kA~~lLs~L~ 288 (405)
-+..|. +++.+.+.+..+|.++..+|..=.
T Consensus 131 ---tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl 161 (556)
T PF05918_consen 131 ---TLTGLFSQIESSKSGDEQVRERALKFLREKL 161 (556)
T ss_dssp ---HHHHHHHHHH---HS-HHHHHHHHHHHHHHG
T ss_pred ---HHHHHHHHHHhcccCchHHHHHHHHHHHHHH
Confidence 222222 333222235668999887775544
No 140
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=91.08 E-value=5.3 Score=42.94 Aligned_cols=145 Identities=14% Similarity=0.117 Sum_probs=100.8
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 015496 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (405)
Q Consensus 175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f 254 (405)
.+..++.-++.+.+.+|.....|+....-.-...+. .-.++.+.+++++++...+.++.|++..+++++. ...+
T Consensus 97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~----~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~~ 170 (569)
T KOG1242|consen 97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSG----EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IESL 170 (569)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCH----HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hhhh
Confidence 466777888889999999999888887754221111 2357888899998777889999999999998754 5677
Q ss_pred HhcCcHHHHHHhhcCCCccHHHHHH-HHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhc---cCCChHHHHHHHHH
Q 015496 255 YVEAGDLMLQDILGNSSFEIRLHRK-AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT---ASADLDLQEKALAA 330 (405)
Q Consensus 255 ~~~gGi~~L~~lL~s~~~~~kl~~k-A~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL---~~~D~~v~E~al~a 330 (405)
.+.+-+..|...+++.+ ...++. +.++...++.+ .++ ..+..+++.+..+| ......+|+.|-.+
T Consensus 171 ~~~~~l~~l~~ai~dk~--~~~~re~~~~a~~~~~~~----Lg~-----~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a 239 (569)
T KOG1242|consen 171 KEFGFLDNLSKAIIDKK--SALNREAALLAFEAAQGN----LGP-----PFEPYIVPILPSILTNFGDKINKVREAAVEA 239 (569)
T ss_pred hhhhHHHHHHHHhcccc--hhhcHHHHHHHHHHHHHh----cCC-----CCCchHHhhHHHHHHHhhccchhhhHHHHHH
Confidence 78888999999998763 334443 44444444442 222 23344555555444 44578899988888
Q ss_pred HHHHhc
Q 015496 331 IKNLLQ 336 (405)
Q Consensus 331 L~~L~~ 336 (405)
...+..
T Consensus 240 ~kai~~ 245 (569)
T KOG1242|consen 240 AKAIMR 245 (569)
T ss_pred HHHHHH
Confidence 887764
No 141
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.94 E-value=5 Score=44.25 Aligned_cols=161 Identities=14% Similarity=0.148 Sum_probs=107.7
Q ss_pred HhHHHHHHHHHHcC-CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHH
Q 015496 112 KRQMEIKELMEKLK-TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI 190 (405)
Q Consensus 112 ~r~~~L~~a~~~~~-~~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~I 190 (405)
+|++-+|.++..|+ |+|...+--.-+.-.... +.+.|.-.-.-+. +.-..+-....+.+..++.=...+++.|
T Consensus 29 kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~--dlelKKlvyLYl~----nYa~~~P~~a~~avnt~~kD~~d~np~i 102 (734)
T KOG1061|consen 29 KRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQTR--DLELKKLVYLYLM----NYAKGKPDLAILAVNTFLKDCEDPNPLI 102 (734)
T ss_pred hHHHHHHHHHhcCccCcchHhhhHHHHhhcccC--CchHHHHHHHHHH----HhhccCchHHHhhhhhhhccCCCCCHHH
Confidence 68888899999886 444333322222222222 3444443322222 2333334444566777777777899999
Q ss_pred HHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCC
Q 015496 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 270 (405)
Q Consensus 191 r~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~ 270 (405)
|..|.+.++.+-- ++..+. ...+|.+.++++.+-+|..|...+.++-..+ .+.+...|-++.|..++.+.
T Consensus 103 R~lAlrtm~~l~v--~~i~ey-----~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~~ll~D~ 172 (734)
T KOG1061|consen 103 RALALRTMGCLRV--DKITEY-----LCDPLLKCLKDDDPYVRKTAAVCVAKLFDID---PDLVEDSGLVDALKDLLSDS 172 (734)
T ss_pred HHHHhhceeeEee--hHHHHH-----HHHHHHHhccCCChhHHHHHHHHHHHhhcCC---hhhccccchhHHHHHHhcCC
Confidence 9999988887653 344443 4688999999999999988888887774433 45677888899999999965
Q ss_pred CccHHHHHHHHHHHHHHhhc
Q 015496 271 SFEIRLHRKAVSLVGDLAKC 290 (405)
Q Consensus 271 ~~~~kl~~kA~~lLs~L~~~ 290 (405)
++-+-.+|+.+++.+...
T Consensus 173 --~p~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 173 --NPMVVANALAALSEIHES 190 (734)
T ss_pred --CchHHHHHHHHHHHHHHh
Confidence 455788898888888753
No 142
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.85 E-value=10 Score=43.83 Aligned_cols=209 Identities=16% Similarity=0.133 Sum_probs=120.4
Q ss_pred HHhHHHHHHHHHHcCCCCHH----HHHHHHHHHhhcCC--CCHHHHHHHHHHHHHccCCCCc-hhHHHhcCCHHHHHHhc
Q 015496 111 KKRQMEIKELMEKLKTPSDA----QLIQIAIDDLNNST--LSLEDSQRALQELLILVEPIDN-ANDLSKLGGLSVLVGQL 183 (405)
Q Consensus 111 ~~r~~~L~~a~~~~~~~~d~----~lmk~al~~L~~~~--~t~e~k~~AL~~L~~Lve~iDn-A~~~~~~Ggi~~Lv~lL 183 (405)
+++++.|.+++.. |+-. +.+....+.+.++- .+.-.+...+..|..+++-.++ --+|+- ..|+-+|=++
T Consensus 672 kK~yrlL~~l~~~---~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~-k~I~EvIL~~ 747 (1176)
T KOG1248|consen 672 KKAYRLLEELSSS---PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP-KLIPEVILSL 747 (1176)
T ss_pred HHHHHHHHHHhcC---CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHhc
Confidence 3577778888764 2222 22222223332211 1223445555555555544441 112222 2355455455
Q ss_pred CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcC------cHHHHHHhhcCC----CHHHHHHHHHHHHHHhcCChhhHHH
Q 015496 184 NHPDTDIRKISAWILGKASQNNPLVQKQVLELG------ALSKLMKMVKSS----FVEEAVKALYTVSSLIRNNLAGQEM 253 (405)
Q Consensus 184 ~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G------~lp~Ll~LL~s~----~~~v~~kAl~ALS~lir~~~~~~~~ 253 (405)
+.-+..-|..|..+|-.++. -+.+.+.| .|..++.++... +..+....+.|+..+..++....+.
T Consensus 748 Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~ 822 (1176)
T KOG1248|consen 748 KEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDD 822 (1176)
T ss_pred ccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccH
Confidence 77888999999999888882 11122233 455566555543 3334444488999888776655444
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHH
Q 015496 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKN 333 (405)
Q Consensus 254 f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~ 333 (405)
-.-.+-++.+..+|.+. ...+++-|+.++.-++.. .|+..-.-....+++.+..+++.....++.++-..|..
T Consensus 823 ~~l~~li~~V~~~L~s~--sreI~kaAI~fikvlv~~-----~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Llek 895 (1176)
T KOG1248|consen 823 ETLEKLISMVCLYLASN--SREIAKAAIGFIKVLVYK-----FPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEK 895 (1176)
T ss_pred HHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHc-----CCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44455677777778876 567888999999998863 23221111223477888887766677788777766666
Q ss_pred Hh
Q 015496 334 LL 335 (405)
Q Consensus 334 L~ 335 (405)
|.
T Consensus 896 Li 897 (1176)
T KOG1248|consen 896 LI 897 (1176)
T ss_pred HH
Confidence 65
No 143
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.81 E-value=5.5 Score=42.72 Aligned_cols=140 Identities=18% Similarity=0.168 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCH-HHHHHHHHHHHHHhc--CChHhHHHHHHcC-cHHHHH
Q 015496 147 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDT-DIRKISAWILGKASQ--NNPLVQKQVLELG-ALSKLM 222 (405)
Q Consensus 147 ~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~-~Ir~~Aa~~Lg~~aq--NN~~~Q~~vle~G-~lp~Ll 222 (405)
++-+..|+.=+.++|.-..+.--..-.|.+..++.|+.++++ .+++.|..+-+.+.. ..+...+. ++.| .+..|.
T Consensus 264 ~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~ 342 (675)
T KOG0212|consen 264 PEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLT 342 (675)
T ss_pred HHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHH
Confidence 456677888888877655555555556778888899877666 588777766533332 11211111 3333 567788
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496 223 KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (405)
Q Consensus 223 ~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~ 290 (405)
+.++++..+.|..++-=|.-+-+..| ++-.......++.|..-|.+.+ ..+-.++.++++++|..
T Consensus 343 ~~l~~~~~~tri~~L~Wi~~l~~~~p-~ql~~h~~~if~tLL~tLsd~s--d~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 343 KYLSDDREETRIAVLNWIILLYHKAP-GQLLVHNDSIFLTLLKTLSDRS--DEVVLLALSLLASICSS 407 (675)
T ss_pred HHhhcchHHHHHHHHHHHHHHHhhCc-chhhhhccHHHHHHHHhhcCch--hHHHHHHHHHHHHHhcC
Confidence 88988888999999999988876554 3333445567888888888763 34788999999999964
No 144
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=90.80 E-value=0.71 Score=48.43 Aligned_cols=178 Identities=15% Similarity=0.123 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHccCCCCchhHHHh-cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc----C--ChHhHHHHHHcCcHHHH
Q 015496 149 DSQRALQELLILVEPIDNANDLSK-LGGLSVLVGQLNHPDTDIRKISAWILGKASQ----N--NPLVQKQVLELGALSKL 221 (405)
Q Consensus 149 ~k~~AL~~L~~Lve~iDnA~~~~~-~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aq----N--N~~~Q~~vle~G~lp~L 221 (405)
.+..|+..+.-+|-..-.+.+..- ......++..|.+..-..|..|+|.+|+|.- | ||..+..=+..-.|..+
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~ 486 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKM 486 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 344555555555544433333221 2344555556666677899999999999874 3 33344333323345555
Q ss_pred HHhhcCC---CHHHHHHHHHHHHHHhcCChhhH---HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccC
Q 015496 222 MKMVKSS---FVEEAVKALYTVSSLIRNNLAGQ---EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (405)
Q Consensus 222 l~LL~s~---~~~v~~kAl~ALS~lir~~~~~~---~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~ 295 (405)
++..... ...|+..|+.||+|+..--.+.+ ......|.+..+....-.+ ...++|-+||++++||..+.
T Consensus 487 ~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~-~~~kV~WNaCya~gNLfkn~---- 561 (728)
T KOG4535|consen 487 LRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTE-AAMKVRWNACYAMGNLFKNP---- 561 (728)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecc-cccccchHHHHHHHHhhcCc----
Confidence 5554332 35688899999999864221111 0111122222322222222 36789999999999998642
Q ss_pred CCCcchhHHhCCc----HHHHHHhcc-CCChHHHHHHHHHHHHHh
Q 015496 296 HKVEPPLFRDRFF----LKSVVDLTA-SADLDLQEKALAAIKNLL 335 (405)
Q Consensus 296 ~~~~~~~l~~~g~----l~~Lv~LL~-~~D~~v~E~al~aL~~L~ 335 (405)
.. .+.+..+ .+.|..++. ..+..++..|+.+|..-.
T Consensus 562 --a~--~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 562 --AL--PLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPG 602 (728)
T ss_pred --cc--cccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCC
Confidence 11 1333333 344455543 357788888887665544
No 145
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=90.79 E-value=2.9 Score=36.84 Aligned_cols=70 Identities=16% Similarity=0.180 Sum_probs=56.1
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHh
Q 015496 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLI 244 (405)
Q Consensus 175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN-~~~Q~~vle~G~lp~Ll~LL~s------~~~~v~~kAl~ALS~li 244 (405)
++..+.+-|+++++.++..|..+|-++++|- +.++..|...+.+..|++++.. .+..|+.+.+.-|-.-.
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 4556667778999999999999999999986 5588888889999999999963 34678887776555443
No 146
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=90.76 E-value=1 Score=48.58 Aligned_cols=151 Identities=15% Similarity=0.158 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCc---hhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 015496 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN---ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP 206 (405)
Q Consensus 130 ~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDn---A~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~ 206 (405)
+.++-..+..|++. +++.+..|++-..-++.-+.+ -..+.++|. .|...|...++++--.-..++..+.+-..
T Consensus 603 ~~ivStiL~~L~~k--~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~ 678 (975)
T COG5181 603 SMIVSTILKLLRSK--PPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHR 678 (975)
T ss_pred HHHHHHHHHHhcCC--CccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhc
Confidence 45566777778776 567777777766655433332 334445543 35677778889988777777777664321
Q ss_pred HhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh---HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHH
Q 015496 207 LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG---QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSL 283 (405)
Q Consensus 207 ~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~---~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~l 283 (405)
.-.-+---.|.+|.|..+|++.+..+.+..+--++-|+.+.|.- ++... .-=-|+..|++. +-.+|+.|...
T Consensus 679 ~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~--nKeiRR~A~~t 753 (975)
T COG5181 679 FRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSW--NKEIRRNATET 753 (975)
T ss_pred ccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHh--hHHHHHhhhhh
Confidence 11000011488999999999999888888888888888777652 11111 111245556664 45689999998
Q ss_pred HHHHhh
Q 015496 284 VGDLAK 289 (405)
Q Consensus 284 Ls~L~~ 289 (405)
+..+++
T Consensus 754 fG~Is~ 759 (975)
T COG5181 754 FGCISR 759 (975)
T ss_pred hhhHHh
Confidence 888874
No 147
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=90.65 E-value=6.2 Score=44.46 Aligned_cols=171 Identities=15% Similarity=0.209 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHh--cCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh
Q 015496 148 EDSQRALQELLILVEPIDNANDLSK--LGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (405)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~~~~--~Ggi~~Lv~lL-~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~L 224 (405)
.++..|++.+-..+++-- ....+ .|.+-.++... ...|..+-..|+.+|.-++......-.. +-.+.+|.|++-
T Consensus 268 K~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~-~~~~v~p~lld~ 344 (815)
T KOG1820|consen 268 KDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK-YAKNVFPSLLDR 344 (815)
T ss_pred HHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH-HHHhhcchHHHH
Confidence 467778777777765543 11111 22344444443 4578899999999999999876554221 223788999999
Q ss_pred hcCCCHHHH---HHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcch
Q 015496 225 VKSSFVEEA---VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPP 301 (405)
Q Consensus 225 L~s~~~~v~---~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~ 301 (405)
+......++ .+++-++++...-. .-.+.+..+++++ ++.++..+..++...... .++....
T Consensus 345 lkekk~~l~d~l~~~~d~~~ns~~l~----------~~~~~I~e~lk~k--np~~k~~~~~~l~r~~~~----~~~~~~~ 408 (815)
T KOG1820|consen 345 LKEKKSELRDALLKALDAILNSTPLS----------KMSEAILEALKGK--NPQIKGECLLLLDRKLRK----LGPKTVE 408 (815)
T ss_pred hhhccHHHHHHHHHHHHHHHhcccHH----------HHHHHHHHHhcCC--ChhhHHHHHHHHHHHHhh----cCCcCcc
Confidence 887665554 45666666622211 1346677778876 566777766666655542 2323333
Q ss_pred hHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496 302 LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (405)
Q Consensus 302 ~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~ 337 (405)
.-.-.++++.++...+..|.+||..|+.++..+...
T Consensus 409 ~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 409 KETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred hhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 333457889999998888999999999999988754
No 148
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=90.57 E-value=3.9 Score=43.67 Aligned_cols=159 Identities=16% Similarity=0.136 Sum_probs=109.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCC----CHHHHHHHHHHHHHHh
Q 015496 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP----DTDIRKISAWILGKAS 202 (405)
Q Consensus 127 ~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~----~~~Ir~~Aa~~Lg~~a 202 (405)
.++....+++++++.++. ...|..|+..|..+.-+...|..|++..|+..|.++..+. +.++......+...+.
T Consensus 79 ~sp~~~a~~i~e~l~~~~--~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elm 156 (713)
T KOG2999|consen 79 ASPSHYAKRIMEILTEGN--NISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELM 156 (713)
T ss_pred cCchHHHHHHHHHHhCCC--cHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHH
Confidence 355677889999998874 5667779999999988888999999999999999999764 3456555555555443
Q ss_pred cCChHhHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHH
Q 015496 203 QNNPLVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKA 280 (405)
Q Consensus 203 qNN~~~Q~~vle~G~lp~Ll~LL~s~--~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA 280 (405)
-.--..-+ .+...++.....+.+-. +.++-..|+.-|-+++-+...-.+.+.+.--++-|+..++.. +..++..|
T Consensus 157 ehgvvsW~-~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~--n~~i~~~a 233 (713)
T KOG2999|consen 157 EHGVVSWE-SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVS--NQRIQTCA 233 (713)
T ss_pred hhceeeee-ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhc--chHHHHHH
Confidence 22110000 01112233333333221 223455677777788777777777777778888888888875 67789999
Q ss_pred HHHHHHHhhc
Q 015496 281 VSLVGDLAKC 290 (405)
Q Consensus 281 ~~lLs~L~~~ 290 (405)
..++..|...
T Consensus 234 ial~nal~~~ 243 (713)
T KOG2999|consen 234 IALLNALFRK 243 (713)
T ss_pred HHHHHHHHhh
Confidence 9999998763
No 149
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=90.36 E-value=4 Score=36.04 Aligned_cols=72 Identities=14% Similarity=0.165 Sum_probs=58.5
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcC
Q 015496 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRN 246 (405)
Q Consensus 175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN-~~~Q~~vle~G~lp~Ll~LL~s-~~~~v~~kAl~ALS~lir~ 246 (405)
++..|.+=|.+.++.++..|..+|-.+++|- +..+..|...+.+..|++++.. .+..|+.+++..|-+-...
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 4556667778899999999999999999984 6688888899999999999975 4568888888777665443
No 150
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=90.36 E-value=1.7 Score=38.92 Aligned_cols=99 Identities=18% Similarity=0.103 Sum_probs=74.1
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCChHhHHHHH-HcCcHHHHHHhhc--CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC
Q 015496 182 QLNHPDTDIRKISAWILGKASQNNPLVQKQVL-ELGALSKLMKMVK--SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 258 (405)
Q Consensus 182 lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vl-e~G~lp~Ll~LL~--s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~g 258 (405)
++...+.+-...+..+++.+-+.-|.+-..++ ..|.++.++.+.. +++..+...++-+|+..+-+ .....|+..+
T Consensus 51 ~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d--~~~r~~I~~~ 128 (157)
T PF11701_consen 51 LLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID--KSCRTFISKN 128 (157)
T ss_dssp HHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS--HHHHHCCHHH
T ss_pred HHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc--HHHHHHHHHH
Confidence 44444455677899999999999999988877 5689999999998 66677888999999988753 4455677778
Q ss_pred cHHHHHHhhcCCCccHH-HHHHHHHH
Q 015496 259 GDLMLQDILGNSSFEIR-LHRKAVSL 283 (405)
Q Consensus 259 Gi~~L~~lL~s~~~~~k-l~~kA~~l 283 (405)
|++.|..+++.+. +.. +|..|+-.
T Consensus 129 ~~~~L~~~~~~~~-~~~~ir~~A~v~ 153 (157)
T PF11701_consen 129 YVSWLKELYKNSK-DDSEIRVLAAVG 153 (157)
T ss_dssp CHHHHHHHTTTCC--HH-CHHHHHHH
T ss_pred HHHHHHHHHcccc-chHHHHHHHHHH
Confidence 9999999997552 344 55555433
No 151
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=90.28 E-value=4.9 Score=34.82 Aligned_cols=72 Identities=17% Similarity=0.104 Sum_probs=57.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH-hHHHHHHcCcHHHHHHhhcCC---CHHHHHHHHHHHHHHhcCC
Q 015496 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPL-VQKQVLELGALSKLMKMVKSS---FVEEAVKALYTVSSLIRNN 247 (405)
Q Consensus 176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~-~Q~~vle~G~lp~Ll~LL~s~---~~~v~~kAl~ALS~lir~~ 247 (405)
+..|-+-|+++++.++..|..+|-.++.|-.. ++..|.....+..|++++... +..++.+++.-|-+-...+
T Consensus 39 ~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 39 ARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 44556667889999999999999999999755 778888878888899999763 4678888887776655443
No 152
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=90.18 E-value=1.2 Score=40.01 Aligned_cols=148 Identities=14% Similarity=0.153 Sum_probs=94.1
Q ss_pred CHHHHHHhcC--CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHH
Q 015496 175 GLSVLVGQLN--HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE 252 (405)
Q Consensus 175 gi~~Lv~lL~--s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~ 252 (405)
.+..++..|. ...+++|..|.-++..+- +..++.+.+ -.-..+-.++.....+-...++.+++.+--.-|....
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence 3455666664 478899999999999884 334443322 1222333344333333567799999999887766655
Q ss_pred HHH-hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChH-HHHHHHH
Q 015496 253 MFY-VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLD-LQEKALA 329 (405)
Q Consensus 253 ~f~-~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~-D~~-v~E~al~ 329 (405)
.++ ..|-.+.+...+.....+..++..++-+++.=|. ++..+ .++...+++.|-++++.+ |.. ++..|+-
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~------d~~~r-~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v 152 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI------DKSCR-TFISKNYVSWLKELYKNSKDDSEIRVLAAV 152 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT------SHHHH-HCCHHHCHHHHHHHTTTCC-HH-CHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc------cHHHH-HHHHHHHHHHHHHHHccccchHHHHHHHHH
Confidence 554 5677788888888332478899999999998774 33333 344456688888888544 444 6777776
Q ss_pred HHHH
Q 015496 330 AIKN 333 (405)
Q Consensus 330 aL~~ 333 (405)
+|..
T Consensus 153 ~L~K 156 (157)
T PF11701_consen 153 GLCK 156 (157)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6543
No 153
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.14 E-value=4.5 Score=44.43 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=27.2
Q ss_pred hHHHhcCCHH-HHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015496 168 NDLSKLGGLS-VLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (405)
Q Consensus 168 ~~~~~~Ggi~-~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~ 210 (405)
.|++..|+|. +++.+|+..+-.+-..|...|-.++.+||+.+.
T Consensus 180 pDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk 223 (938)
T KOG1077|consen 180 PDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYK 223 (938)
T ss_pred ccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHh
Confidence 3556666654 666777766666666666677777766665443
No 154
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.95 E-value=33 Score=38.08 Aligned_cols=123 Identities=21% Similarity=0.202 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC
Q 015496 149 DSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS 228 (405)
Q Consensus 149 ~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~ 228 (405)
+--.||.=|..++ -.|-|+|+. +-++.+|+|+.|=+|..|.-++-.+.---|+.-. -.+|+|.+-|.++
T Consensus 125 e~giAL~GLS~fv-TpdLARDLa-----~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDp 193 (877)
T KOG1059|consen 125 EVGLALSGLSCIV-TPDLARDLA-----DDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDP 193 (877)
T ss_pred hhhheeccccccc-CchhhHHHH-----HHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCC
Confidence 3445666666554 457788765 4577889999999999999999887755454332 4789999999999
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015496 229 FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (405)
Q Consensus 229 ~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~ 288 (405)
++.|...|+..||-++|-+|.+.-.+ -|.+.++|.+.+ +.=+..|..-++.+|+
T Consensus 194 Dp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSs-NNWmLIKiiKLF~aLt 247 (877)
T KOG1059|consen 194 DPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSS-NNWVLIKLLKLFAALT 247 (877)
T ss_pred CchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccC-CCeehHHHHHHHhhcc
Confidence 99999999999999999998764443 256666665442 3346677777888776
No 155
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=89.95 E-value=7.8 Score=42.27 Aligned_cols=145 Identities=17% Similarity=0.102 Sum_probs=81.6
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhc----CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015496 135 IAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL----GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (405)
Q Consensus 135 ~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~----Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~ 210 (405)
.++.++-+- +.+-+.-|||.|+.++-+.-....|++. ..+..++..++ .++..+..++++|.|+..| |..++
T Consensus 548 ~~l~~l~~w--p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~ 623 (745)
T KOG0301|consen 548 LALAILLQW--PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRE 623 (745)
T ss_pred HHHHHHhcC--CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHH
Confidence 355554442 5677888999999999776555555552 23445555555 6788999999999999987 87888
Q ss_pred HHHHcCcHHHHHHhhc---C-CCHHHHHHHHHHHHHHhcCChhh-HHHHHhcCcHHHHHHhhcC---CCccHHHHHHHHH
Q 015496 211 QVLELGALSKLMKMVK---S-SFVEEAVKALYTVSSLIRNNLAG-QEMFYVEAGDLMLQDILGN---SSFEIRLHRKAVS 282 (405)
Q Consensus 211 ~vle~G~lp~Ll~LL~---s-~~~~v~~kAl~ALS~lir~~~~~-~~~f~~~gGi~~L~~lL~s---~~~~~kl~~kA~~ 282 (405)
.+... +..++..+. + ++..++ -|++.++-|+.-. .+.-.+.+|.+.|..++.. +..+..-.-+.+-
T Consensus 624 ~~~s~--~~~i~~~~~~~~s~~~knl~----ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~ 697 (745)
T KOG0301|consen 624 LFMSR--LESILDPVIEASSLSNKNLQ----IALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLV 697 (745)
T ss_pred HHHHH--HHHHhhhhhhhhcccchhHH----HHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHH
Confidence 77654 333333221 1 112221 1222222111111 0011125677777666542 2123434456777
Q ss_pred HHHHHhh
Q 015496 283 LVGDLAK 289 (405)
Q Consensus 283 lLs~L~~ 289 (405)
++.+|+.
T Consensus 698 AlgtL~t 704 (745)
T KOG0301|consen 698 ALGTLMT 704 (745)
T ss_pred HHHhhcc
Confidence 7788874
No 156
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=89.90 E-value=12 Score=40.29 Aligned_cols=168 Identities=14% Similarity=0.099 Sum_probs=96.3
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC----CCHHHHHHHHHHHHHHhc----C
Q 015496 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH----PDTDIRKISAWILGKASQ----N 204 (405)
Q Consensus 133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s----~~~~Ir~~Aa~~Lg~~aq----N 204 (405)
++-..+.+.+...+..+...++-.+...+...+ ...+..+..++.+ +++-++..|.-.+|+++. +
T Consensus 359 ~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt-------~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~ 431 (574)
T smart00638 359 LKFIKQWIKNKKITPLEAAQLLAVLPHTARYPT-------EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVN 431 (574)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCC-------HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcC
Confidence 333444555566665556666666655543332 1134455566654 356788888888887764 3
Q ss_pred ChHhHHHHHHcCcHHHHHHhhcC----CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhc-CCCccHHHHHH
Q 015496 205 NPLVQKQVLELGALSKLMKMVKS----SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG-NSSFEIRLHRK 279 (405)
Q Consensus 205 N~~~Q~~vle~G~lp~Ll~LL~s----~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~-s~~~~~kl~~k 279 (405)
++.+...+ -...++.|.+.|.. .+...+.-++-||||+ +++.. +..|..++. +...+..+|.-
T Consensus 432 ~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~--g~~~~---------i~~l~~~l~~~~~~~~~iR~~ 499 (574)
T smart00638 432 TPSCPDFV-LEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA--GHPSS---------IKVLEPYLEGAEPLSTFIRLA 499 (574)
T ss_pred CCCCChhh-HHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc--CChhH---------HHHHHHhcCCCCCCCHHHHHH
Confidence 33332222 23466777776643 2334466789999998 34543 344444454 33356789999
Q ss_pred HHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC--CChHHHHHHHHHHH
Q 015496 280 AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS--ADLDLQEKALAAIK 332 (405)
Q Consensus 280 A~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~--~D~~v~E~al~aL~ 332 (405)
|++++..++.. .+ ..+-+.+..+..+ .++++|-.|..+|.
T Consensus 500 Av~Alr~~a~~-----~p--------~~v~~~l~~i~~n~~e~~EvRiaA~~~lm 541 (574)
T smart00638 500 AILALRNLAKR-----DP--------RKVQEVLLPIYLNRAEPPEVRMAAVLVLM 541 (574)
T ss_pred HHHHHHHHHHh-----Cc--------hHHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 99999988742 22 1233344445443 47788877765443
No 157
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.86 E-value=2.9 Score=48.05 Aligned_cols=142 Identities=13% Similarity=0.106 Sum_probs=104.4
Q ss_pred CCHHHH-HHhcC----CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCC
Q 015496 174 GGLSVL-VGQLN----HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNN 247 (405)
Q Consensus 174 Ggi~~L-v~lL~----s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~-s~~~~v~~kAl~ALS~lir~~ 247 (405)
|-+.|+ +...+ .++|++|..|.-+++.+.-=..+ |- .-.+|.|+..+. ++++-+|..++-|+|-++--+
T Consensus 918 g~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~----fc-es~l~llftimeksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 918 GRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE----FC-ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH----HH-HHHHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence 445555 45554 36899999999999998752221 11 246799999997 666788999999999887777
Q ss_pred hhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHH
Q 015496 248 LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKA 327 (405)
Q Consensus 248 ~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~a 327 (405)
|...+.+- +.|-.-|.+. +..+|+.|.-.+++|..+ . .+.-.|.+..++.+|..++..+.+.|
T Consensus 993 pnlie~~T-----~~Ly~rL~D~--~~~vRkta~lvlshLILn------d----miKVKGql~eMA~cl~D~~~~IsdlA 1055 (1251)
T KOG0414|consen 993 PNLIEPWT-----EHLYRRLRDE--SPSVRKTALLVLSHLILN------D----MIKVKGQLSEMALCLEDPNAEISDLA 1055 (1251)
T ss_pred ccccchhh-----HHHHHHhcCc--cHHHHHHHHHHHHHHHHh------h----hhHhcccHHHHHHHhcCCcHHHHHHH
Confidence 76655543 4555556765 677899999999999853 1 45556999999999999999999888
Q ss_pred HHHHHHHhcC
Q 015496 328 LAAIKNLLQL 337 (405)
Q Consensus 328 l~aL~~L~~~ 337 (405)
=.....|..-
T Consensus 1056 k~FF~Els~k 1065 (1251)
T KOG0414|consen 1056 KSFFKELSSK 1065 (1251)
T ss_pred HHHHHHhhhc
Confidence 7555555543
No 158
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=89.56 E-value=5.6 Score=34.58 Aligned_cols=71 Identities=15% Similarity=0.233 Sum_probs=56.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcC-ChHhHHHHHHcCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhcC
Q 015496 176 LSVLVGQLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMKMVKSSF--VEEAVKALYTVSSLIRN 246 (405)
Q Consensus 176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqN-N~~~Q~~vle~G~lp~Ll~LL~s~~--~~v~~kAl~ALS~lir~ 246 (405)
+..|-+=|+++++.++..|..+|-.+++| -+.+...|...+.+..|..++.+.. +.|+.+++..+.+-...
T Consensus 39 ~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 39 VRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 34456667889999999999999999999 4668888888899999999998754 33888888777765443
No 159
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=89.37 E-value=4.4 Score=36.50 Aligned_cols=115 Identities=15% Similarity=0.106 Sum_probs=79.0
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCc--HHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhc
Q 015496 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE 293 (405)
Q Consensus 216 G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gG--i~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~ 293 (405)
..+..+..+|++++...|-.++.-+..++..++ .+.|.++++ +..|..+|+.+ .+..++.-++.++..|...-
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~-~~~~~~~~ai~~L~~l~~~~-- 99 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKP-DPPSVLEAAIITLTRLFDLI-- 99 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHh--
Confidence 355678899999888888888888888887654 355655554 46777778875 46778889999999997532
Q ss_pred cCCCCcchhHHhC---CcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496 294 NMHKVEPPLFRDR---FFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (405)
Q Consensus 294 ~~~~~~~~~l~~~---g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~ 337 (405)
..-++....+... ++++.++.++.. ..+.+.++.+|..+...
T Consensus 100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 100 RGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred cCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 1223322222221 556666666654 57888999999988764
No 160
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=89.27 E-value=1.7 Score=48.65 Aligned_cols=120 Identities=12% Similarity=0.124 Sum_probs=83.6
Q ss_pred hHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH-h-cCcHHHHHHhhcCCCccHHHHHHHHHH
Q 015496 206 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY-V-EAGDLMLQDILGNSSFEIRLHRKAVSL 283 (405)
Q Consensus 206 ~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~-~-~gGi~~L~~lL~s~~~~~kl~~kA~~l 283 (405)
+-.++.+. ...+|.|++.+.+.+...+-.-+-+||..+.|-|. +.+. + ..-+++|++.|+-+ |..+|..+..+
T Consensus 858 iLykQRfF-~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~--D~~v~vstl~~ 932 (1030)
T KOG1967|consen 858 ILYKQRFF-CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMP--DVIVRVSTLRT 932 (1030)
T ss_pred HHHHHHHH-HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCC--ccchhhhHhhh
Confidence 33444443 46889999999866667788889999999987654 2222 2 34578888888876 56678899999
Q ss_pred HHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCC---hHHHHHHHHHHHHHhc
Q 015496 284 VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASAD---LDLQEKALAAIKNLLQ 336 (405)
Q Consensus 284 Ls~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D---~~v~E~al~aL~~L~~ 336 (405)
+..+... .+..... .-.-++|.+..+=.+.| .-+|+.|+.+|..|+.
T Consensus 933 i~~~l~~-----~~tL~t~-~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~ 982 (1030)
T KOG1967|consen 933 IPMLLTE-----SETLQTE-HLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTR 982 (1030)
T ss_pred hhHHHHh-----ccccchH-HHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhc
Confidence 9998753 2211111 11257788877755555 6799999999999987
No 161
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=89.12 E-value=16 Score=37.49 Aligned_cols=121 Identities=12% Similarity=0.054 Sum_probs=84.2
Q ss_pred HHHHHHHHhc---CChHhHHHHHH-cCcHHHHHHhhcCCC---HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHh
Q 015496 194 SAWILGKASQ---NNPLVQKQVLE-LGALSKLMKMVKSSF---VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDI 266 (405)
Q Consensus 194 Aa~~Lg~~aq---NN~~~Q~~vle-~G~lp~Ll~LL~s~~---~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~l 266 (405)
-...|..+.+ ++...-..+++ ...+..|-.++++.. ..+-..|+..++.++.+.|.....+.+.|-++.+++.
T Consensus 80 lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~ 159 (379)
T PF06025_consen 80 LLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDA 159 (379)
T ss_pred HHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHH
Confidence 3345555555 44444444556 334445556666654 4567789999999999999999999999999988888
Q ss_pred hc-CCC-ccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCC
Q 015496 267 LG-NSS-FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASAD 320 (405)
Q Consensus 267 L~-s~~-~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D 320 (405)
+. .+- ....+..-.-.+++.||- +..-.+.+.+.+.++.+.+++.+++
T Consensus 160 i~~~~i~~s~e~l~~lP~~l~AicL------N~~Gl~~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 160 ITAKGILPSSEVLTSLPNVLSAICL------NNRGLEKVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred HhccCCCCcHHHHHHHHHHHhHHhc------CHHHHHHHHhcChHHHHHHHhCCHH
Confidence 87 321 234456666677888884 4455667888888888888877653
No 162
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.09 E-value=7.1 Score=41.22 Aligned_cols=118 Identities=19% Similarity=0.278 Sum_probs=71.4
Q ss_pred HHHhcCCHHHHHHhc----CCCCHHHHHHHHHHHHHHhcCCh-HhHHHHHHcCcHHHHH-HhhcCCCHHHHHHHHHHHHH
Q 015496 169 DLSKLGGLSVLVGQL----NHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLM-KMVKSSFVEEAVKALYTVSS 242 (405)
Q Consensus 169 ~~~~~Ggi~~Lv~lL----~s~~~~Ir~~Aa~~Lg~~aqNN~-~~Q~~vle~G~lp~Ll-~LL~s~~~~v~~kAl~ALS~ 242 (405)
.+-+.|.+.-++..| ..++..+|..|+.+|++.+..-| +++... .-.+..++ .|.+..+.+|.-.|+-+|-.
T Consensus 249 ~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~--~~~ldaii~gL~D~~~~~V~leam~~Lt~ 326 (533)
T KOG2032|consen 249 ELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHK--TTQLDAIIRGLYDDLNEEVQLEAMKCLTM 326 (533)
T ss_pred cccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhH--HHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 344677777666544 25788999999999999999844 222211 12333344 34444456776666666665
Q ss_pred HhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496 243 LIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (405)
Q Consensus 243 lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~ 290 (405)
+..--..-.-.++=.+..--+..+..+. +.++|..|.+++..|+.-
T Consensus 327 v~~~~~~~~l~~~~l~ialrlR~l~~se--~~~~R~aa~~Lfg~L~~l 372 (533)
T KOG2032|consen 327 VLEKASNDDLESYLLNIALRLRTLFDSE--DDKMRAAAFVLFGALAKL 372 (533)
T ss_pred HHHhhhhcchhhhchhHHHHHHHHHHhc--ChhhhhhHHHHHHHHHHH
Confidence 5432111111122234445666777775 567888999999999853
No 163
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=89.01 E-value=24 Score=34.58 Aligned_cols=162 Identities=17% Similarity=0.161 Sum_probs=82.2
Q ss_pred CHHHHHHhcC--CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH------hc-
Q 015496 175 GLSVLVGQLN--HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL------IR- 245 (405)
Q Consensus 175 gi~~Lv~lL~--s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~l------ir- 245 (405)
.++.|+.-|. +..|-||-.|+.+||.+.. + ..++.|-++.+.+..+++.-+..||-.+ ..
T Consensus 68 Av~~l~~vl~desq~pmvRhEAaealga~~~--~---------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~ 136 (289)
T KOG0567|consen 68 AVPVLVEVLLDESQEPMVRHEAAEALGAIGD--P---------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKI 136 (289)
T ss_pred hhHHHHHHhcccccchHHHHHHHHHHHhhcc--h---------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccc
Confidence 5788888664 5779999999999999873 2 2334444555444334433232222221 11
Q ss_pred --------CChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhch----h-ccC-CCC--cc-------hh
Q 015496 246 --------NNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ----L-ENM-HKV--EP-------PL 302 (405)
Q Consensus 246 --------~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~----~-~~~-~~~--~~-------~~ 302 (405)
.+|... ...+-+.-|...|.+.+...--|..|.|.|.|+-.+. + +.. .++ ++ ..
T Consensus 137 ~~~~p~~SvdPa~p---~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQ 213 (289)
T KOG0567|consen 137 ANSSPYISVDPAPP---ANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQ 213 (289)
T ss_pred cccCccccCCCCCc---cccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhh
Confidence 011111 0111233333333333223333445666665552110 0 000 000 00 01
Q ss_pred HHhCCcHHHHHHhccC--CChHHHHHHHHHHHHHhcCChhhHHHHHhcCCch
Q 015496 303 FRDRFFLKSVVDLTAS--ADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLD 352 (405)
Q Consensus 303 l~~~g~l~~Lv~LL~~--~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~ 352 (405)
+...-.++.|.+.|.. .++-+|--|+.||+.++. +++..++.+..|-+
T Consensus 214 l~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e~~~~vL~e~~~D~ 263 (289)
T KOG0567|consen 214 LQSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--EDCVEVLKEYLGDE 263 (289)
T ss_pred ccchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--HHHHHHHHHHcCCc
Confidence 1123346777777654 477888999999999985 56777776555543
No 164
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=88.91 E-value=3 Score=36.44 Aligned_cols=69 Identities=20% Similarity=0.253 Sum_probs=55.4
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcCCC-HH---HHHHHHHHHHHH
Q 015496 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSSF-VE---EAVKALYTVSSL 243 (405)
Q Consensus 175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN-~~~Q~~vle~G~lp~Ll~LL~s~~-~~---v~~kAl~ALS~l 243 (405)
++..|-+-|.++++.++..|..+|-.+++|- +.++..|.....+..|.+++.+.. .. |+.+++--|..-
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHH
Confidence 3455677788999999999999999999996 678888888889999999987644 33 788877655543
No 165
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=88.86 E-value=14 Score=39.75 Aligned_cols=119 Identities=15% Similarity=0.138 Sum_probs=70.7
Q ss_pred CHHHHHHhcC----CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc-CC--CHHHHHHHHHHHHHHhcCC
Q 015496 175 GLSVLVGQLN----HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SS--FVEEAVKALYTVSSLIRNN 247 (405)
Q Consensus 175 gi~~Lv~lL~----s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~-s~--~~~v~~kAl~ALS~lir~~ 247 (405)
.++.+...|. ..+.+-+..+..+|||+..- ..++.|...+. +. +..+|..|+|||..++..+
T Consensus 443 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~-----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~ 511 (574)
T smart00638 443 LLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP-----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRD 511 (574)
T ss_pred HHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh-----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 4455555443 24555566777777777642 23455666665 22 3568999999999887665
Q ss_pred hhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChHHHHH
Q 015496 248 LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEK 326 (405)
Q Consensus 248 ~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~-D~~v~E~ 326 (405)
+.. .-+.|..++.+...+..+|.-|..++-. + +| ...++..++..+..+ +..|.-.
T Consensus 512 p~~--------v~~~l~~i~~n~~e~~EvRiaA~~~lm~-t-------~P-------~~~~l~~ia~~l~~E~~~QV~sf 568 (574)
T smart00638 512 PRK--------VQEVLLPIYLNRAEPPEVRMAAVLVLME-T-------KP-------SVALLQRIAELLNKEPNLQVASF 568 (574)
T ss_pred chH--------HHHHHHHHHcCCCCChHHHHHHHHHHHh-c-------CC-------CHHHHHHHHHHHhhcCcHHHHHH
Confidence 543 2356677777655566677666554433 2 22 134666777777664 4445443
Q ss_pred H
Q 015496 327 A 327 (405)
Q Consensus 327 a 327 (405)
+
T Consensus 569 v 569 (574)
T smart00638 569 V 569 (574)
T ss_pred h
Confidence 3
No 166
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.78 E-value=0.74 Score=52.23 Aligned_cols=127 Identities=20% Similarity=0.209 Sum_probs=88.0
Q ss_pred HHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhcc
Q 015496 238 YTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA 317 (405)
Q Consensus 238 ~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~ 317 (405)
-.|-.+++++..++..|.+++|+.+|+.++-++ .-|.-.+.+++.|... ++. -+.+..+-++|+.|+
T Consensus 664 DcLisllKnnteNqklFreanGvklilpflind----ehRSslLrivscLitv-----dpk----qvhhqelmalVdtLk 730 (2799)
T KOG1788|consen 664 DCLISLLKNNTENQKLFREANGVKLILPFLIND----EHRSSLLRIVSCLITV-----DPK----QVHHQELMALVDTLK 730 (2799)
T ss_pred HHHHHHHhccchhhHHHHhhcCceEEEEeeech----HHHHHHHHHHHHHhcc-----Ccc----cccHHHHHHHHHHHH
Confidence 356678999999999999999999999998654 2466777888888753 332 112344556666666
Q ss_pred CC------------ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHH--HHHHHhhhchhhhhhHHH
Q 015496 318 SA------------DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR--QQLQEVMLEEDQRDYAMD 377 (405)
Q Consensus 318 ~~------------D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~--~~~~~l~~~~~q~~~~~d 377 (405)
++ ..+.....+.+++.+.......+.+|++.+|..-++..|. ++..+++.+.||+.|..-
T Consensus 731 sgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyikl 804 (2799)
T KOG1788|consen 731 SGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKL 804 (2799)
T ss_pred hcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHH
Confidence 52 2345667778888888666667788887777766665554 344667776668888733
No 167
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=88.75 E-value=4.3 Score=35.97 Aligned_cols=73 Identities=16% Similarity=0.170 Sum_probs=58.8
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh-HhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCC
Q 015496 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNN 247 (405)
Q Consensus 175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~-~~Q~~vle~G~lp~Ll~LL~s-~~~~v~~kAl~ALS~lir~~ 247 (405)
.+..|.+=|.+.++.++..|..+|-++++|.. .++..|.....+..|++++.. .+..|+.+.+.-|-.-...+
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 34556666778999999999999999999966 477778888999999999988 56788888887776654443
No 168
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=88.71 E-value=20 Score=42.69 Aligned_cols=145 Identities=12% Similarity=0.160 Sum_probs=95.4
Q ss_pred CHHHHHHHHHHHhhcCCC--------C-HHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHH
Q 015496 128 SDAQLIQIAIDDLNNSTL--------S-LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWIL 198 (405)
Q Consensus 128 ~d~~lmk~al~~L~~~~~--------t-~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~L 198 (405)
..-..||-.+..+...+. + --+.-.|.....++...-...+.|-. -+..++..|..+...+|..|..||
T Consensus 763 ~~~n~~K~~~~~Ik~~~~~~~~~~~~s~~~d~~~a~li~~~la~~r~f~~sfD~--yLk~Il~~l~e~~ialRtkAlKcl 840 (1692)
T KOG1020|consen 763 TVENELKYILSKIKDKEKSGRGPKLNSRFADDDDAKLIVFYLAHARSFSQSFDP--YLKLILSVLGENAIALRTKALKCL 840 (1692)
T ss_pred hhHHHHHHHHHHhcchhhhccCcCCCCccccchhHHHHHHHHHhhhHHHHhhHH--HHHHHHHHhcCchHHHHHHHHHHH
Confidence 344556666666654320 0 01122333444444444444444432 366777888999999999999999
Q ss_pred HHHhcCC------hHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCc
Q 015496 199 GKASQNN------PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSF 272 (405)
Q Consensus 199 g~~aqNN------~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~ 272 (405)
+.++.-. |.+|..|. .-+.+.+..||..|+--+|..+-.++....+++ +.+..-+.++
T Consensus 841 S~ive~Dp~vL~~~dvq~~Vh---------~R~~DssasVREAaldLvGrfvl~~~e~~~qyY-----~~i~erIlDt-- 904 (1692)
T KOG1020|consen 841 SMIVEADPSVLSRPDVQEAVH---------GRLNDSSASVREAALDLVGRFVLSIPELIFQYY-----DQIIERILDT-- 904 (1692)
T ss_pred HHHHhcChHhhcCHHHHHHHH---------HhhccchhHHHHHHHHHHhhhhhccHHHHHHHH-----HHHHhhcCCC--
Confidence 9999764 45555443 334445678999999999988887887777775 3444445544
Q ss_pred cHHHHHHHHHHHHHHhhc
Q 015496 273 EIRLHRKAVSLVGDLAKC 290 (405)
Q Consensus 273 ~~kl~~kA~~lLs~L~~~ 290 (405)
.+.+|+++...+..+|..
T Consensus 905 gvsVRKRvIKIlrdic~e 922 (1692)
T KOG1020|consen 905 GVSVRKRVIKILRDICEE 922 (1692)
T ss_pred chhHHHHHHHHHHHHHHh
Confidence 577999999999999964
No 169
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=88.50 E-value=7.7 Score=39.25 Aligned_cols=173 Identities=11% Similarity=0.060 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcC---cHHHHHHh
Q 015496 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELG---ALSKLMKM 224 (405)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G---~lp~Ll~L 224 (405)
|--..+-.-|++++....-|.-+.....+..+.++...++=+|-..|..++..+-..++..-..++..+ .+...-.|
T Consensus 138 dial~~g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~L 217 (335)
T PF08569_consen 138 DIALNCGDMLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKL 217 (335)
T ss_dssp TTHHHHHHHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666555566666666677788888889999999999999999999998888888764 46678889
Q ss_pred hcCCCHHHHHHHHHHHHHHhcC--ChhhHHHHHh-cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcch
Q 015496 225 VKSSFVEEAVKALYTVSSLIRN--NLAGQEMFYV-EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPP 301 (405)
Q Consensus 225 L~s~~~~v~~kAl~ALS~lir~--~~~~~~~f~~-~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~ 301 (405)
|.+++=-++.+++--||.++-+ |-.....++. ..-+..++.+|+++ +..+|..|...+-=++.++ +-++....
T Consensus 218 l~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~--sk~Iq~eAFhvFKvFVANp--~K~~~I~~ 293 (335)
T PF08569_consen 218 LESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK--SKNIQFEAFHVFKVFVANP--NKPPPIVD 293 (335)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S---HHHHHHHHHHHHHHHH-S--S-BHHHHH
T ss_pred ccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc--chhhhHHHHHHHHHHHhCC--CCChHHHH
Confidence 9998877899999999998865 3333344443 45678889999987 4568999998888887642 22233444
Q ss_pred hHHhC--CcHHHHHHhccCC--ChHHH
Q 015496 302 LFRDR--FFLKSVVDLTASA--DLDLQ 324 (405)
Q Consensus 302 ~l~~~--g~l~~Lv~LL~~~--D~~v~ 324 (405)
.+..+ .++..+-++.... |.++.
T Consensus 294 iL~~Nr~kLl~fl~~f~~~~~~D~qf~ 320 (335)
T PF08569_consen 294 ILIKNREKLLRFLKDFHTDRTDDEQFE 320 (335)
T ss_dssp HHHHTHHHHHHHHHTTTTT--S-CHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCccccHH
Confidence 44433 5555555554433 44444
No 170
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=88.39 E-value=4.1 Score=44.07 Aligned_cols=165 Identities=14% Similarity=0.097 Sum_probs=88.0
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC----CCHHHHHHHHHHHHHHhcCChHh----
Q 015496 137 IDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH----PDTDIRKISAWILGKASQNNPLV---- 208 (405)
Q Consensus 137 l~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s----~~~~Ir~~Aa~~Lg~~aqNN~~~---- 208 (405)
++.+.+...+..+....+-.|...+...+ .. .+..+..++++ .++.++..|.-.+|+++...-..
T Consensus 401 ~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt--~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~ 473 (618)
T PF01347_consen 401 KDLIKSKKLTDDEAAQLLASLPFHVRRPT--EE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSA 473 (618)
T ss_dssp HHHHHTT-S-HHHHHHHHHHHHHT-------HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhhcCCCC--HH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeeccccc
Confidence 33444455565666666666666552322 11 23344455543 46778888888888887431111
Q ss_pred -----HHHHHHcCcHHHHHHhhc----CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCC-CccHHHHH
Q 015496 209 -----QKQVLELGALSKLMKMVK----SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS-SFEIRLHR 278 (405)
Q Consensus 209 -----Q~~vle~G~lp~Ll~LL~----s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~-~~~~kl~~ 278 (405)
....+....++.|...+. ..+...+..++.||+|+ +++. .++.|..++.+. ..+..+|.
T Consensus 474 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~--g~~~---------~i~~l~~~i~~~~~~~~~~R~ 542 (618)
T PF01347_consen 474 EFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL--GHPE---------SIPVLLPYIEGKEEVPHFIRV 542 (618)
T ss_dssp -------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--T-GG---------GHHHHHTTSTTSS-S-HHHHH
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc--CCch---------hhHHHHhHhhhccccchHHHH
Confidence 011222346677777666 23345678899999998 3343 456667766654 34677888
Q ss_pred HHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC--CChHHHHHHHHHHH
Q 015496 279 KAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS--ADLDLQEKALAAIK 332 (405)
Q Consensus 279 kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~--~D~~v~E~al~aL~ 332 (405)
.|++++..++.. .+ ..+.+.+..+..+ .++++|-.|..+|.
T Consensus 543 ~Ai~Alr~~~~~-----~~--------~~v~~~l~~I~~n~~e~~EvRiaA~~~lm 585 (618)
T PF01347_consen 543 AAIQALRRLAKH-----CP--------EKVREILLPIFMNTTEDPEVRIAAYLILM 585 (618)
T ss_dssp HHHHTTTTGGGT------H--------HHHHHHHHHHHH-TTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc-----Cc--------HHHHHHHHHHhcCCCCChhHHHHHHHHHH
Confidence 999998877532 11 2234455555544 37788877764443
No 171
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=88.30 E-value=8.1 Score=44.22 Aligned_cols=185 Identities=16% Similarity=0.127 Sum_probs=101.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhH---HHHHh--cCc
Q 015496 185 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ---EMFYV--EAG 259 (405)
Q Consensus 185 s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~---~~f~~--~gG 259 (405)
|=++.+|+.|||+|..++.-.|+. +..+.+|+|++...+.+...+.-+.-|.+.++.+..... ..+.+ ..|
T Consensus 555 HWd~~irelaa~aL~~Ls~~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~ 630 (1133)
T KOG1943|consen 555 HWDVKIRELAAYALHKLSLTEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAG 630 (1133)
T ss_pred cccHHHHHHHHHHHHHHHHhhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhh
Confidence 458999999999999999866643 345789999999988888888777777777766533222 11111 122
Q ss_pred HHHHHHh-----hcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHH
Q 015496 260 DLMLQDI-----LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334 (405)
Q Consensus 260 i~~L~~l-----L~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L 334 (405)
+.-++.- +..+. ...++.-.+..+..+.. ........+.-.++-.-+.+.+..++ .+++.+.++++.+
T Consensus 631 l~~ii~~~~~~~~~rg~-~~lmr~~~~~~Ie~~s~-----s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l 703 (1133)
T KOG1943|consen 631 LLSIIPPICDRYFYRGQ-GTLMRQATLKFIEQLSL-----SKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDL 703 (1133)
T ss_pred hhhhccHHHHHHhccch-HHHHHHHHHHHHHHhhh-----ccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHH
Confidence 2111111 11111 12344445555555442 22233334444556666666665555 7888888888877
Q ss_pred hcCChhhHHHHHhcCCchHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHH
Q 015496 335 LQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRREV 385 (405)
Q Consensus 335 ~~~~~~~~~~v~~~~Gl~~~L~~L~~~~~~l~~~~~q~~~~~d~~~l~~e~ 385 (405)
.+- ....+++-..+...+...+......+-.-.-+..+++.|+.|-
T Consensus 704 ~s~-----y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~ 749 (1133)
T KOG1943|consen 704 VST-----YVKADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSEL 749 (1133)
T ss_pred HHH-----HHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHh
Confidence 641 2222122222333444444333222222334666777777543
No 172
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.25 E-value=0.7 Score=50.06 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=65.3
Q ss_pred hhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 015496 167 ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN 246 (405)
Q Consensus 167 A~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~ 246 (405)
+..++..|.--.+|.-|...--+||..|...++.++++.|..... ++..|+++++++-+.||.+|+++|-.|+.|
T Consensus 366 ~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 366 EESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMISVH 440 (823)
T ss_pred ccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 456778888888998888888999999999999999999987764 567899999988889999999999888765
No 173
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=88.19 E-value=3.4 Score=44.72 Aligned_cols=120 Identities=13% Similarity=0.101 Sum_probs=73.5
Q ss_pred CHHHHHHhcC----CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC---CHHHHHHHHHHHHHHhcCC
Q 015496 175 GLSVLVGQLN----HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS---FVEEAVKALYTVSSLIRNN 247 (405)
Q Consensus 175 gi~~Lv~lL~----s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~---~~~v~~kAl~ALS~lir~~ 247 (405)
.++.|...|. ..+.+-+..+..+|||+.. | ..++.|..++... +..+|..|+||+..+...+
T Consensus 487 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~---------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~ 555 (618)
T PF01347_consen 487 YVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--P---------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC 555 (618)
T ss_dssp GTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G---------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-
T ss_pred HHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--c---------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC
Confidence 4555555554 3566778888888888864 2 4678888888876 3578999999999887766
Q ss_pred hhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChHHHHH
Q 015496 248 LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEK 326 (405)
Q Consensus 248 ~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~-D~~v~E~ 326 (405)
+.- ..+.|..++.+...+..+|.-|..+|-. + +| ....+..++..+..+ +..|.-.
T Consensus 556 ~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm~-~-------~P-------~~~~l~~i~~~l~~E~~~QV~sf 612 (618)
T PF01347_consen 556 PEK--------VREILLPIFMNTTEDPEVRIAAYLILMR-C-------NP-------SPSVLQRIAQSLWNEPSNQVASF 612 (618)
T ss_dssp HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHHHH-T-----------------HHHHHHHHHHHTT-S-HHHHHH
T ss_pred cHH--------HHHHHHHHhcCCCCChhHHHHHHHHHHh-c-------CC-------CHHHHHHHHHHHhhCchHHHHHH
Confidence 643 3466777777665566677666544433 2 22 134677777777654 5555544
Q ss_pred HH
Q 015496 327 AL 328 (405)
Q Consensus 327 al 328 (405)
+.
T Consensus 613 v~ 614 (618)
T PF01347_consen 613 VY 614 (618)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 174
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=87.67 E-value=8.9 Score=41.13 Aligned_cols=153 Identities=12% Similarity=0.134 Sum_probs=109.1
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCH----HHHHHHHHHHHHHhcCChhhHHH
Q 015496 178 VLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV----EEAVKALYTVSSLIRNNLAGQEM 253 (405)
Q Consensus 178 ~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~----~v~~kAl~ALS~lir~~~~~~~~ 253 (405)
.+...+.+++..-|..|..-+..+... +..-+.|+...++..|.+++.++.. .+....+.|.|.+.-+.-...+.
T Consensus 87 ~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~ 165 (713)
T KOG2999|consen 87 RIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWES 165 (713)
T ss_pred HHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeee
Confidence 455667778888888888888888764 7778889999999999999988753 46778899999988775433332
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHH
Q 015496 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKN 333 (405)
Q Consensus 254 f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~ 333 (405)
+- ..++.-...+.+-...+..+-..|+..+-++.. .++.....+.++--+..|+..|...|..++.+|...+..
T Consensus 166 ~~-~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl-----~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~na 239 (713)
T KOG2999|consen 166 VS-NDFVVSMASYVNAKREDANTLLAALQMLESLVL-----GSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNA 239 (713)
T ss_pred cc-cHHHHHHHHHHhhhhhcccchHHHHHHHHHHHh-----CChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 22 223333333333222344456678888888774 244456677788889999999999999999988887777
Q ss_pred HhcC
Q 015496 334 LLQL 337 (405)
Q Consensus 334 L~~~ 337 (405)
|...
T Consensus 240 l~~~ 243 (713)
T KOG2999|consen 240 LFRK 243 (713)
T ss_pred HHhh
Confidence 6644
No 175
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=87.42 E-value=6.4 Score=38.79 Aligned_cols=112 Identities=17% Similarity=0.048 Sum_probs=78.5
Q ss_pred CcHHHHH-HhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhcc
Q 015496 216 GALSKLM-KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 294 (405)
Q Consensus 216 G~lp~Ll-~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~ 294 (405)
+.+..|+ .-+++++..+|..|+-+||-.+=-+...... .++.+...++.+ +..++..|+.++.++....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~--~~~v~~~al~~l~Dll~~~--- 95 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKD--DEEVKITALKALFDLLLTH--- 95 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHc---
Confidence 4555555 6677888899999998888654444432222 246777778554 6778999999999998632
Q ss_pred CCCCcch-------hHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015496 295 MHKVEPP-------LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (405)
Q Consensus 295 ~~~~~~~-------~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~ 338 (405)
+....+ ......+++.+.+.|.+.+++++..++..++.|.-.+
T Consensus 96 -g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 96 -GIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred -CchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 111111 1223568888889999999999999999999987553
No 176
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=87.17 E-value=2.9 Score=34.22 Aligned_cols=72 Identities=15% Similarity=0.136 Sum_probs=55.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 015496 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA 249 (405)
Q Consensus 176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~ 249 (405)
+...+..|+++.+.+|.++...|..+...+. ....-..+.+..++..|+++++-+--.|+-+++.++.-+|.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 3456677889999999999999999999776 11122246778888899888877877888888888877664
No 177
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.80 E-value=16 Score=41.14 Aligned_cols=189 Identities=13% Similarity=0.090 Sum_probs=123.3
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhH
Q 015496 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ 209 (405)
Q Consensus 130 ~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q 209 (405)
.+...+++..+.++. +.-|..++..|..++++-+-+..+..-|.+...+..|++.++=+=-.|...+..++.
T Consensus 726 ~e~~qeai~sl~d~q--vpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lce------ 797 (982)
T KOG4653|consen 726 IEPLQEAISSLHDDQ--VPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCE------ 797 (982)
T ss_pred HHHHHHHHHHhcCCc--ccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHH------
Confidence 355666777776654 345788999999999988878888888999999999999888888888887777774
Q ss_pred HHHHHcCcHHHHHH-hhcCCC---HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015496 210 KQVLELGALSKLMK-MVKSSF---VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG 285 (405)
Q Consensus 210 ~~vle~G~lp~Ll~-LL~s~~---~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs 285 (405)
+.....+|.|.+ ..++.. .+.+-+.=-||..+++--.+....+.+ --+...+..++++ +...|..++..+.
T Consensus 798 --vy~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep--d~~~RaSS~a~lg 872 (982)
T KOG4653|consen 798 --VYPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP--DHEFRASSLANLG 872 (982)
T ss_pred --hcchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc--hHHHHHhHHHHHH
Confidence 356688899988 444332 233444445666655543332222221 1122223333443 6778999999999
Q ss_pred HHhhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChHHHHHHHHHHHHHhcC
Q 015496 286 DLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQL 337 (405)
Q Consensus 286 ~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~-D~~v~E~al~aL~~L~~~ 337 (405)
+||.- ......+.+. .++..++.+...+ .+-+|..|...+..+..+
T Consensus 873 ~Lcq~----~a~~vsd~~~--ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 873 QLCQL----LAFQVSDFFH--EVLQLILSLETTDGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred HHHHH----HhhhhhHHHH--HHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence 99952 1111111222 2455566666655 677888888888888864
No 178
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=86.77 E-value=2.3 Score=39.55 Aligned_cols=148 Identities=17% Similarity=0.083 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHH---------------hcCcHHHHHHhhcC---CC-ccHHHHHHHHHHHHHHhhch
Q 015496 231 EEAVKALYTVSSLIRNNLAGQEMFY---------------VEAGDLMLQDILGN---SS-FEIRLHRKAVSLVGDLAKCQ 291 (405)
Q Consensus 231 ~v~~kAl~ALS~lir~~~~~~~~f~---------------~~gGi~~L~~lL~s---~~-~~~kl~~kA~~lLs~L~~~~ 291 (405)
...-.++--|||+.|....+...+- +...+..|+.++.. .. ....--...++++.|+.+
T Consensus 10 ~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~-- 87 (192)
T PF04063_consen 10 PLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ-- 87 (192)
T ss_pred chHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC--
Confidence 3455677778888775444332221 12245666666543 10 011113457888888875
Q ss_pred hccCCCCcchhHHhC--Cc--HHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhc-CCchHHHHHHHHHHHHhh
Q 015496 292 LENMHKVEPPLFRDR--FF--LKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDF-CGLDTALERLRQQLQEVM 366 (405)
Q Consensus 292 ~~~~~~~~~~~l~~~--g~--l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~-~Gl~~~L~~L~~~~~~l~ 366 (405)
.++.+..|.+. +. +..|+.++.+.+.--|.-++.+|.|++-....|...+..+ ..+.|.|-.-..+.++.-
T Consensus 88 ----~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLaGpEe~d 163 (192)
T PF04063_consen 88 ----LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLAGPEELD 163 (192)
T ss_pred ----CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhccCCCcCC
Confidence 35666677654 44 8889999998887788899999999998766565555533 455555444433423221
Q ss_pred hchhhhhhHHHHHHHHHHHHHHHhhh
Q 015496 367 LEEDQRDYAMDVEALRREVELIFFRK 392 (405)
Q Consensus 367 ~~~~q~~~~~d~~~l~~e~~~~~~~k 392 (405)
. .|.+.++.+.|++...|
T Consensus 164 ~--------ee~~~lp~~LQ~L~~dK 181 (192)
T PF04063_consen 164 E--------EEMEKLPPELQLLPPDK 181 (192)
T ss_pred H--------HHHHcCCHHHhhcCCCC
Confidence 1 24677888888777766
No 179
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=86.70 E-value=31 Score=33.23 Aligned_cols=98 Identities=15% Similarity=0.124 Sum_probs=72.6
Q ss_pred HHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHhcCCh-HhHHHHHHcCcHHHHHHh
Q 015496 151 QRALQELLILVEPIDNANDLSKLGGLSVLVGQLN-----HPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKM 224 (405)
Q Consensus 151 ~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~-----s~~~~Ir~~Aa~~Lg~~aqNN~-~~Q~~vle~G~lp~Ll~L 224 (405)
..||.-|.-++...+....|.+...=--+..+|+ ++.+-+|..+..+||.+++|.. ++-........+|.++++
T Consensus 118 cnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI 197 (315)
T COG5209 118 CNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI 197 (315)
T ss_pred HHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence 5677777778888888778877653223335553 2457899999999999999854 444444566899999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCh
Q 015496 225 VKSSFVEEAVKALYTVSSLIRNNL 248 (405)
Q Consensus 225 L~s~~~~v~~kAl~ALS~lir~~~ 248 (405)
...+++--+.-|++-+.-++.+..
T Consensus 198 me~gSElSktvaifI~qkil~dDv 221 (315)
T COG5209 198 MELGSELSKTVAIFIFQKILGDDV 221 (315)
T ss_pred HHhhhHHHHHHHHHHHHHHhccch
Confidence 999887667778888888877654
No 180
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.56 E-value=1.3 Score=47.97 Aligned_cols=104 Identities=15% Similarity=0.139 Sum_probs=72.4
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (405)
Q Consensus 211 ~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~ 290 (405)
.++.+|+-..++.=|.++--+||..|+++++.++-+.|.... -.+..|+..+++. ..-+|.+|.+++..++.+
T Consensus 368 siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE--~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 368 SIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDE--IEVVRLKAIFALTMISVH 440 (823)
T ss_pred ccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccH--HHHHHHHHHHHHHHHHHH
Confidence 356667778888888766678999999999999988776433 2568999999986 445788999999999853
Q ss_pred hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHH
Q 015496 291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIK 332 (405)
Q Consensus 291 ~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~ 332 (405)
- .++...++.+.+.|....+++++.....|.
T Consensus 441 l-----------~i~eeql~~il~~L~D~s~dvRe~l~elL~ 471 (823)
T KOG2259|consen 441 L-----------AIREEQLRQILESLEDRSVDVREALRELLK 471 (823)
T ss_pred h-----------eecHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 1 122344555555555555556554444333
No 181
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.52 E-value=72 Score=37.25 Aligned_cols=169 Identities=14% Similarity=0.124 Sum_probs=104.1
Q ss_pred HHHhHHHHHHHH-HHcCC-C-CHHHHHHHHHHHhhcCC--CCHHHH-HHHHHHHHHccCCCCc--hhHHHhcCCHHHHHH
Q 015496 110 LKKRQMEIKELM-EKLKT-P-SDAQLIQIAIDDLNNST--LSLEDS-QRALQELLILVEPIDN--ANDLSKLGGLSVLVG 181 (405)
Q Consensus 110 l~~r~~~L~~a~-~~~~~-~-~d~~lmk~al~~L~~~~--~t~e~k-~~AL~~L~~Lve~iDn--A~~~~~~Ggi~~Lv~ 181 (405)
+..|..+|+... +-+.. | +.....+.++..+.... .-...+ ..-|+.+.-++.-.++ ...+. .+..
T Consensus 587 l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~------~v~~ 660 (1176)
T KOG1248|consen 587 LASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLF------TVDP 660 (1176)
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHH------HhhH
Confidence 445888888776 33332 2 23445566555544322 111122 2234444434333332 22222 4444
Q ss_pred h-cCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc--CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC
Q 015496 182 Q-LNHPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 258 (405)
Q Consensus 182 l-L~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~--G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~g 258 (405)
. .++.+..+|..+-.+|..+.+. |.++..+.+. .....|.+-+++.+...+..++-+|+.+++.++.-...|+-..
T Consensus 661 ~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~ 739 (1176)
T KOG1248|consen 661 EFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKL 739 (1176)
T ss_pred HhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3 4567999999999999999997 6555554432 3445555666666667889999999999998875555566555
Q ss_pred cHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015496 259 GDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (405)
Q Consensus 259 Gi~~L~~lL~s~~~~~kl~~kA~~lLs~L~ 288 (405)
..++++.. +.. +.+.|+.|.-+|..++
T Consensus 740 I~EvIL~~-Ke~--n~~aR~~Af~lL~~i~ 766 (1176)
T KOG1248|consen 740 IPEVILSL-KEV--NVKARRNAFALLVFIG 766 (1176)
T ss_pred HHHHHHhc-ccc--cHHHHhhHHHHHHHHH
Confidence 66666655 543 6788999999999998
No 182
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=86.48 E-value=2.3 Score=39.56 Aligned_cols=96 Identities=16% Similarity=0.203 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhh
Q 015496 188 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL 267 (405)
Q Consensus 188 ~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL 267 (405)
..+-..+..+|...+.+|+++|..+.++ ++.++..+.......-..+...+..+.++|+.....+.+.. +..++.++
T Consensus 75 ~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll 151 (207)
T PF01365_consen 75 KELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-TTHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHH
Confidence 4677899999999999999999999875 44334443332222223467778889999999888887665 88888888
Q ss_pred cCCCccHHHHHHHHHHHHHHhhc
Q 015496 268 GNSSFEIRLHRKAVSLVGDLAKC 290 (405)
Q Consensus 268 ~s~~~~~kl~~kA~~lLs~L~~~ 290 (405)
...+ -+.+-+-+++.||..
T Consensus 152 ~~~g----r~~~~L~~L~~lc~~ 170 (207)
T PF01365_consen 152 RKHG----RQPRYLDFLSSLCVC 170 (207)
T ss_dssp -----------------------
T ss_pred HHcC----CChHHHHHHhhhccc
Confidence 7632 234567778888864
No 183
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=86.08 E-value=40 Score=33.82 Aligned_cols=210 Identities=13% Similarity=0.099 Sum_probs=131.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhc-CChHhHHHHHHc-----CcHHHHHHhhcCC--C--------HHHHHHHH-H
Q 015496 176 LSVLVGQLNHPDTDIRKISAWILGKASQ-NNPLVQKQVLEL-----GALSKLMKMVKSS--F--------VEEAVKAL-Y 238 (405)
Q Consensus 176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aq-NN~~~Q~~vle~-----G~lp~Ll~LL~s~--~--------~~v~~kAl-~ 238 (405)
+..+.+.|++..+.+...+..+|..++. +.......|+.. ..++.|+..=+.. . +.+|...+ +
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7788889999889999999999999999 888888888765 3444444332211 1 16666554 5
Q ss_pred HHHHHhcCChhhHHHHHhcCc-HHHHHHhhcCCCccHHHHHHHHHHHHH-HhhchhccCCCCcchhHHhCCcHHHHHHhc
Q 015496 239 TVSSLIRNNLAGQEMFYVEAG-DLMLQDILGNSSFEIRLHRKAVSLVGD-LAKCQLENMHKVEPPLFRDRFFLKSVVDLT 316 (405)
Q Consensus 239 ALS~lir~~~~~~~~f~~~gG-i~~L~~lL~s~~~~~kl~~kA~~lLs~-L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL 316 (405)
.|+-+...++.....++..++ +..+.+-|..+ +..+....+..+.. +..+. ......+-.+.....+..|+.+-
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D--~~~~v~~iL~~l~~~Vl~~~--~v~r~~K~~~fn~~~L~~l~~Ly 213 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKD--PPETVILILETLKDKVLKDS--SVSRSTKCKLFNEWTLSQLASLY 213 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCC--CHHHHHHHHHHHHHHhccCC--CCChhhhhhhcCHHHHHHHHHHh
Confidence 566555556667777777654 56666667665 45555555555553 33221 22334445566778899999988
Q ss_pred cCCCh----HHHHHHHHHHHHHhcCChhhHHHHHhcCCc---------------------hHHHHHHHHHHHHhhhchhh
Q 015496 317 ASADL----DLQEKALAAIKNLLQLRTTEALVLKDFCGL---------------------DTALERLRQQLQEVMLEEDQ 371 (405)
Q Consensus 317 ~~~D~----~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl---------------------~~~L~~L~~~~~~l~~~~~q 371 (405)
..++. .+.+.+-..|..++..+.. .-.+. +.|. -..|..|...++.-- +..|
T Consensus 214 ~~~~~~~~~~~~~~vh~fL~~lcT~p~~-Gv~f~-d~~~~~~~~~~~~~~~~~~~~~~~~Nk~L~~ll~~lkp~e-~~~q 290 (330)
T PF11707_consen 214 SRDGEDEKSSVADLVHEFLLALCTDPKH-GVCFP-DNGWYPRESDSGVPVTINNKSFKINNKLLLNLLKKLKPWE-DDRQ 290 (330)
T ss_pred cccCCcccchHHHHHHHHHHHHhcCCCc-ccccC-CCCcCcCcccccccccccCCCCCcccHHHHHHHHHCCCCc-cHHH
Confidence 87777 8899999888888876432 22222 1111 122333333322211 4456
Q ss_pred hhhHHH-HHHHHHHHHHHHhhh
Q 015496 372 RDYAMD-VEALRREVELIFFRK 392 (405)
Q Consensus 372 ~~~~~d-~~~l~~e~~~~~~~k 392 (405)
.+.+.. +++.++.+.-+++..
T Consensus 291 ~~Lvl~Il~~~PeLva~Y~~~~ 312 (330)
T PF11707_consen 291 QELVLKILKACPELVAPYFNNL 312 (330)
T ss_pred HHHHHHHHHHChHHHHHHHHhh
Confidence 665544 788888888887766
No 184
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.05 E-value=17 Score=40.52 Aligned_cols=159 Identities=13% Similarity=0.131 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcC
Q 015496 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS 227 (405)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s 227 (405)
..|..|+..+-.++-.-+++.+ -+|.+|+...+.+.+||...---|-.-|.++|... .=-|..+=+-|++
T Consensus 50 ~~KleAmKRIia~iA~G~dvS~-----~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA-----LLSIntfQk~L~D 119 (968)
T KOG1060|consen 50 SLKLEAMKRIIALIAKGKDVSL-----LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA-----LLSINTFQKALKD 119 (968)
T ss_pred HHHHHHHHHHHHHHhcCCcHHH-----HHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce-----eeeHHHHHhhhcC
Confidence 4577777766666544444433 24555555555555555544444444343332111 0135667777888
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCC
Q 015496 228 SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF 307 (405)
Q Consensus 228 ~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g 307 (405)
+++.+|.-|+.++|+| |-. ...-+ .+-.+.++..+. .+.+|+.|+.+|--|-+ .+++....+
T Consensus 120 pN~LiRasALRvlSsI-Rvp--~IaPI----~llAIk~~~~D~--s~yVRk~AA~AIpKLYs-----Ld~e~k~qL---- 181 (968)
T KOG1060|consen 120 PNQLIRASALRVLSSI-RVP--MIAPI----MLLAIKKAVTDP--SPYVRKTAAHAIPKLYS-----LDPEQKDQL---- 181 (968)
T ss_pred CcHHHHHHHHHHHHhc-chh--hHHHH----HHHHHHHHhcCC--cHHHHHHHHHhhHHHhc-----CChhhHHHH----
Confidence 8899999999999987 431 11111 122344455554 67899999999998874 344444433
Q ss_pred cHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015496 308 FLKSVVDLTASADLDLQEKALAAIKNLL 335 (405)
Q Consensus 308 ~l~~Lv~LL~~~D~~v~E~al~aL~~L~ 335 (405)
+..+-.||...++-|.-.|+.|...+.
T Consensus 182 -~e~I~~LLaD~splVvgsAv~AF~evC 208 (968)
T KOG1060|consen 182 -EEVIKKLLADRSPLVVGSAVMAFEEVC 208 (968)
T ss_pred -HHHHHHHhcCCCCcchhHHHHHHHHhc
Confidence 333444555556666666665555444
No 185
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=86.02 E-value=1.2 Score=44.59 Aligned_cols=81 Identities=15% Similarity=0.130 Sum_probs=67.2
Q ss_pred CchhHHHhc--CCHHHHHHhcCCCCHH-HHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 015496 165 DNANDLSKL--GGLSVLVGQLNHPDTD-IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVS 241 (405)
Q Consensus 165 DnA~~~~~~--Ggi~~Lv~lL~s~~~~-Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS 241 (405)
+|+..|.+- ..+..|..+|++.++. .-+-||.=|+..+..-|+....+.++|+=..++.|++++++.++-.|+.|+-
T Consensus 345 ~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q 424 (432)
T COG5231 345 TNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQ 424 (432)
T ss_pred hhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHH
Confidence 455555554 3577888999876665 6678999999999999999999999999999999999999999988888877
Q ss_pred HHhc
Q 015496 242 SLIR 245 (405)
Q Consensus 242 ~lir 245 (405)
.++.
T Consensus 425 ~~i~ 428 (432)
T COG5231 425 TCIS 428 (432)
T ss_pred HHHh
Confidence 6653
No 186
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=85.92 E-value=8.3 Score=34.66 Aligned_cols=143 Identities=17% Similarity=0.163 Sum_probs=85.3
Q ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 015496 176 LSVLVGQLNH-PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV-KSSFVEEAVKALYTVSSLIRNNLAGQEM 253 (405)
Q Consensus 176 i~~Lv~lL~s-~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL-~s~~~~v~~kAl~ALS~lir~~~~~~~~ 253 (405)
++.|+++|++ .+.++|..|..+||.+-.=.|...+.+....- ... ...........+ ...+..+..+.
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~-----~~~~~~~~~~~~~~~l-----~~~~~~~~~ee 81 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD-----SKSSENSNDESTDISL-----PMMGISPSSEE 81 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC-----ccccccccccchhhHH-----hhccCCCchHH
Confidence 5667788864 56999999999999998877766553332111 000 000011111111 11223335666
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHH
Q 015496 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKN 333 (405)
Q Consensus 254 f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~ 333 (405)
|+-.-.+..|+..|++++ -......++.++.++... .+....+.+- .++|.+++.+++.+...+|..+.-|..
T Consensus 82 ~y~~vvi~~L~~iL~D~s-Ls~~h~~vv~ai~~If~~----l~~~cv~~L~--~viP~~l~~i~~~~~~~~e~~~~qL~~ 154 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPS-LSSHHTAVVQAIMYIFKS----LGLKCVPYLP--QVIPIFLRVIRTCPDSLREFYFQQLAD 154 (160)
T ss_pred HHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHh----cCcCchhHHH--HHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 776777888888888763 233455677777777643 1222233332 477888888887666888887776666
Q ss_pred Hh
Q 015496 334 LL 335 (405)
Q Consensus 334 L~ 335 (405)
|.
T Consensus 155 lv 156 (160)
T PF11865_consen 155 LV 156 (160)
T ss_pred HH
Confidence 65
No 187
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=85.76 E-value=10 Score=33.43 Aligned_cols=90 Identities=12% Similarity=0.149 Sum_probs=67.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHH
Q 015496 235 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD 314 (405)
Q Consensus 235 kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~ 314 (405)
..+-.|+-+++..+.+-. .++..|.+-|+++ ++.++..|+.++-.++. |..+.+...+.+..|+..|+.
T Consensus 20 ~~ileicD~In~~~~~~k-----~a~rai~krl~~~--n~~v~l~AL~LLe~~vk----NCG~~fh~evas~~Fl~el~k 88 (139)
T cd03567 20 EAIQAFCEQINKEPEGPQ-----LAVRLLAHKIQSP--QEKEALQALTVLEACMK----NCGERFHSEVGKFRFLNELIK 88 (139)
T ss_pred HHHHHHHHHHHcCCccHH-----HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----HcCHHHHHHHHhHHHHHHHHH
Confidence 355556666665443211 2456777778876 57789999999999886 466777778888999999999
Q ss_pred hccC------CChHHHHHHHHHHHHHh
Q 015496 315 LTAS------ADLDLQEKALAAIKNLL 335 (405)
Q Consensus 315 LL~~------~D~~v~E~al~aL~~L~ 335 (405)
++.. .+..|+++++..+..-+
T Consensus 89 l~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 89 LVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 9963 47899999998887765
No 188
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=85.25 E-value=28 Score=37.76 Aligned_cols=110 Identities=13% Similarity=0.067 Sum_probs=75.1
Q ss_pred CHHHHHHhcCC--C-----CHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 015496 175 GLSVLVGQLNH--P-----DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN 247 (405)
Q Consensus 175 gi~~Lv~lL~s--~-----~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~ 247 (405)
.+|.|+++|.. + +=.+-..|..||--.+|+ +.+.+++- .+..+=+-+++++=.-|..|+-|+|++..+-
T Consensus 322 vlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~---~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp 397 (858)
T COG5215 322 VLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL---KGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGP 397 (858)
T ss_pred HHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH---hhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCc
Confidence 68999999954 2 224777888888888876 34444432 4444445566666566889999999998663
Q ss_pred hhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496 248 LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (405)
Q Consensus 248 ~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~ 290 (405)
...+..-+-...++.|...+.++ ..-++..++|++..++.+
T Consensus 398 ~~~~lT~~V~qalp~i~n~m~D~--~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 398 CEDCLTKIVPQALPGIENEMSDS--CLWVKSTTAWCFGAIADH 438 (858)
T ss_pred cHHHHHhhHHhhhHHHHHhcccc--eeehhhHHHHHHHHHHHH
Confidence 33333333356777777777754 456788999999999865
No 189
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=84.89 E-value=7.8 Score=33.56 Aligned_cols=91 Identities=21% Similarity=0.190 Sum_probs=69.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHH
Q 015496 235 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD 314 (405)
Q Consensus 235 kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~ 314 (405)
..+..|+.+++..+.+... ++..|.+-|+++ ++.++..|+.++-.+.. |..+.+...+.+..++..|+.
T Consensus 19 ~~il~icd~I~~~~~~~k~-----a~raL~krl~~~--n~~vql~AL~lLd~~vk----Ncg~~f~~~i~s~~fl~~l~~ 87 (133)
T cd03561 19 ALNLELCDLINLKPNGPKE-----AARAIRKKIKYG--NPHVQLLALTLLELLVK----NCGKPFHLQVADKEFLLELVK 87 (133)
T ss_pred HHHHHHHHHHhCCCCCHHH-----HHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----hCChHHHHHHhhHHHHHHHHH
Confidence 4667788888776443322 457777778876 67889999999999886 456656677777788888999
Q ss_pred hccC---CChHHHHHHHHHHHHHhc
Q 015496 315 LTAS---ADLDLQEKALAAIKNLLQ 336 (405)
Q Consensus 315 LL~~---~D~~v~E~al~aL~~L~~ 336 (405)
++.. .+..++++++..+.....
T Consensus 88 l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 88 IAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 9975 488999999998888764
No 190
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=84.72 E-value=26 Score=33.74 Aligned_cols=179 Identities=17% Similarity=0.126 Sum_probs=104.9
Q ss_pred HHHHHHHHHHccCC-CCchhHHHhcCCHHHH-HH-------hcC-----CCCHHHHHHHHHHHHHHhcCChHhHHHHHHc
Q 015496 150 SQRALQELLILVEP-IDNANDLSKLGGLSVL-VG-------QLN-----HPDTDIRKISAWILGKASQNNPLVQKQVLEL 215 (405)
Q Consensus 150 k~~AL~~L~~Lve~-iDnA~~~~~~Ggi~~L-v~-------lL~-----s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~ 215 (405)
|+.||++|-.--++ .|.|-.+-...|++.. ++ +|+ .....-.+.|..+|-.+++ .|+.+..|++.
T Consensus 62 kEqaL~EL~rkreq~~dlAl~lW~s~gvmt~LLqEiisvYpiL~p~~l~~~~snRvcnaL~lLQclaS-hPetk~~Fl~A 140 (315)
T COG5209 62 KEQALDELFRKREQSPDLALELWRSDGVMTFLLQEIISVYPILSPSKLDERESNRVCNALNLLQCLAS-HPETKKVFLDA 140 (315)
T ss_pred HHHHHHHHHHHHhcCCCeeeeehhccchHHHHHHHHHhhhhccCccccCchhhhHHHHHHHHHHHHhc-Ccchheeeeec
Confidence 44466666554443 4566666665555433 22 232 1223334556666665554 69999999887
Q ss_pred Cc---HHHHHHhhcCCC--HHHHHHHHHHHHHHhcCChhhHHHHH-hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496 216 GA---LSKLMKMVKSSF--VEEAVKALYTVSSLIRNNLAGQEMFY-VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 216 G~---lp~Ll~LL~s~~--~~v~~kAl~ALS~lir~~~~~~~~f~-~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~ 289 (405)
.. +-+++-..++.+ +-.|..++..|+++++|..+-.-.|+ .-..++.+.+++..+ +.--+.-|+|.+.-+.-
T Consensus 141 hiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~g--SElSktvaifI~qkil~ 218 (315)
T COG5209 141 HIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELG--SELSKTVAIFIFQKILG 218 (315)
T ss_pred ccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhh--hHHHHHHHHHHHHHHhc
Confidence 53 223333333322 34688999999999999766555554 568899999999876 33456677777776652
Q ss_pred chhccCCCCcc----h---hHH-hCCcHHHHHHhc-cCCChHHHHHHHHHHHHHhcC
Q 015496 290 CQLENMHKVEP----P---LFR-DRFFLKSVVDLT-ASADLDLQEKALAAIKNLLQL 337 (405)
Q Consensus 290 ~~~~~~~~~~~----~---~l~-~~g~l~~Lv~LL-~~~D~~v~E~al~aL~~L~~~ 337 (405)
+..-. + .|. -..+++.++..+ ..+...+..+++++-..|...
T Consensus 219 ------dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~ 269 (315)
T COG5209 219 ------DDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK 269 (315)
T ss_pred ------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence 22111 1 111 123444444433 345667778888877777654
No 191
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=84.20 E-value=3.3 Score=32.49 Aligned_cols=68 Identities=10% Similarity=0.097 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCc
Q 015496 233 AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFF 308 (405)
Q Consensus 233 ~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~ 308 (405)
.+.|+||++++.. .+.+...+.+.+.++.++++.... ....+|--+.+.+.-+++ ..+-.+.+.+.|+
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s-~v~siRGT~fy~Lglis~------T~~G~~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENS-PVLSIRGTCFYVLGLISS------TEEGAEILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhC-CccchHHHHHHHHHHHhC------CHHHHHHHHHcCC
Confidence 4569999999964 677788777889999999998765 234455555555555553 3344455555554
No 192
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=83.70 E-value=43 Score=36.43 Aligned_cols=156 Identities=9% Similarity=-0.060 Sum_probs=93.6
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc-CcH
Q 015496 182 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE-AGD 260 (405)
Q Consensus 182 lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~-gGi 260 (405)
-+++++-.=|..|+.++|.+..+--+.+-.-+-..++|.++-+..++.--++..+.|+++.|.-+-+...+.-... +-+
T Consensus 374 ni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~v 453 (858)
T COG5215 374 NIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEV 453 (858)
T ss_pred hccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHH
Confidence 3456777889999999999998755555555556889999888876555678888888888875544322211110 112
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh--CCcHHHHHHhc--cCCChHHHHHHHHHHHHHhc
Q 015496 261 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD--RFFLKSVVDLT--ASADLDLQEKALAAIKNLLQ 336 (405)
Q Consensus 261 ~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~--~g~l~~Lv~LL--~~~D~~v~E~al~aL~~L~~ 336 (405)
+....-|.+ .++.-.+.+|..-||+.+-. ....+..+.+.. ..++..|+..- ..++...|..+-.+|+.|..
T Consensus 454 sa~liGl~D---~p~~~~ncsw~~~nlv~h~a-~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~ 529 (858)
T COG5215 454 SASLIGLMD---CPFRSINCSWRKENLVDHIA-KAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLIL 529 (858)
T ss_pred HHHHhhhhc---cchHHhhhHHHHHhHHHhhh-hhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 222222332 35677889999999986521 111111111211 12333333321 23466788888888998887
Q ss_pred CChhh
Q 015496 337 LRTTE 341 (405)
Q Consensus 337 ~~~~~ 341 (405)
..++.
T Consensus 530 ~~~d~ 534 (858)
T COG5215 530 ICPDA 534 (858)
T ss_pred hcchh
Confidence 65543
No 193
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=83.26 E-value=19 Score=39.93 Aligned_cols=157 Identities=15% Similarity=0.109 Sum_probs=98.8
Q ss_pred hcCCHHHHHH-hcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChh
Q 015496 172 KLGGLSVLVG-QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM-VKSSFVEEAVKALYTVSSLIRNNLA 249 (405)
Q Consensus 172 ~~Ggi~~Lv~-lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~L-L~s~~~~v~~kAl~ALS~lir~~~~ 249 (405)
..+...++|. ++...+|-+|....-.++-+-.+.. +.++|..|+.. +++.++.||..|+-||+-++-..|.
T Consensus 516 rqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~ 588 (929)
T KOG2062|consen 516 RQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE 588 (929)
T ss_pred hhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChh
Confidence 3456677775 5567889999887766655433221 24678889988 4556789999999999998876665
Q ss_pred hHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChHHHHHHH
Q 015496 250 GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKAL 328 (405)
Q Consensus 250 ~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~-D~~v~E~al 328 (405)
. .+-.+.+|..+ .++-+|--++.+|.=-|.+. .+ .+ .+. |++-|.++ ..-||.-|+
T Consensus 589 ~---------~~s~V~lLses-~N~HVRyGaA~ALGIaCAGt---G~---~e------Ai~-lLepl~~D~~~fVRQgAl 645 (929)
T KOG2062|consen 589 Q---------LPSTVSLLSES-YNPHVRYGAAMALGIACAGT---GL---KE------AIN-LLEPLTSDPVDFVRQGAL 645 (929)
T ss_pred h---------chHHHHHHhhh-cChhhhhhHHHHHhhhhcCC---Cc---HH------HHH-HHhhhhcChHHHHHHHHH
Confidence 3 34445556544 35668889999999888541 11 11 122 22223333 345667777
Q ss_pred HHHHHHhcCChhhHHHHHhcCCchHHHHHHHHHHHHhhh
Q 015496 329 AAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVML 367 (405)
Q Consensus 329 ~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~~~~l~~ 367 (405)
-++.-+.-. +.--+.|.....++++..++.
T Consensus 646 Ia~amIm~Q---------~t~~~~pkv~~frk~l~kvI~ 675 (929)
T KOG2062|consen 646 IALAMIMIQ---------QTEQLCPKVNGFRKQLEKVIN 675 (929)
T ss_pred HHHHHHHHh---------cccccCchHHHHHHHHHHHhh
Confidence 776665432 123455667777777777664
No 194
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.06 E-value=48 Score=37.05 Aligned_cols=158 Identities=17% Similarity=0.145 Sum_probs=96.5
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCHH---------------HHHHHHHHHHHccCCCCc-hhHHHhcCCH-HH
Q 015496 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLE---------------DSQRALQELLILVEPIDN-ANDLSKLGGL-SV 178 (405)
Q Consensus 116 ~L~~a~~~~~~~~d~~lmk~al~~L~~~~~t~e---------------~k~~AL~~L~~Lve~iDn-A~~~~~~Ggi-~~ 178 (405)
++++.+++=....-.+-||+.+..+-|.+.-+. +....|--.-++|...++ ...++.|=.+ ..
T Consensus 24 ~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna 103 (948)
T KOG1058|consen 24 EIKEKLEKGDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNA 103 (948)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHH
Confidence 346666631112234679999988888764322 112333334455555544 4445544211 12
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC
Q 015496 179 LVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 258 (405)
Q Consensus 179 Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~g 258 (405)
+-+-|+|||+=||-...+-|+.+=- |+.- ...+|.+...|.+.+.=||..|+.||.+|-+++.. +=-.
T Consensus 104 ~RkDLQHPNEyiRG~TLRFLckLkE--~ELl-----epl~p~IracleHrhsYVRrNAilaifsIyk~~~~-----L~pD 171 (948)
T KOG1058|consen 104 YRKDLQHPNEYIRGSTLRFLCKLKE--PELL-----EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH-----LIPD 171 (948)
T ss_pred HhhhccCchHhhcchhhhhhhhcCc--HHHh-----hhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh-----hcCC
Confidence 2346788999999888888877642 3222 35678889999999999999999999999876321 1234
Q ss_pred cHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 015496 259 GDLMLQDILGNSSFEIRLHRKAVSLVGD 286 (405)
Q Consensus 259 Gi~~L~~lL~s~~~~~kl~~kA~~lLs~ 286 (405)
+-+++-++|... .|...+|+|.-.|..
T Consensus 172 apeLi~~fL~~e-~DpsCkRNAFi~L~~ 198 (948)
T KOG1058|consen 172 APELIESFLLTE-QDPSCKRNAFLMLFT 198 (948)
T ss_pred hHHHHHHHHHhc-cCchhHHHHHHHHHh
Confidence 566666666554 255567776554443
No 195
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=82.76 E-value=50 Score=32.26 Aligned_cols=190 Identities=17% Similarity=0.136 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHccCC-CCchhHHHhc-CCHHHHHH-hc------C----CCCHHHHHHHHHHHHHHhcCChHhHHHHHH
Q 015496 148 EDSQRALQELLILVEP-IDNANDLSKL-GGLSVLVG-QL------N----HPDTDIRKISAWILGKASQNNPLVQKQVLE 214 (405)
Q Consensus 148 e~k~~AL~~L~~Lve~-iDnA~~~~~~-Ggi~~Lv~-lL------~----s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle 214 (405)
+.++.|+.+|.+--+. .|.|..+-+. |-...+++ .+ + ++...-|.--+-+|-.++-..|+.+..|++
T Consensus 39 p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQcvASHpdTr~~FL~ 118 (293)
T KOG3036|consen 39 PTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQCVASHPDTRRAFLR 118 (293)
T ss_pred chHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHHHhcCcchHHHHHH
Confidence 5577788888776654 3666665554 33333332 11 1 123334544444444555567999999999
Q ss_pred cCcHHHHHHhhcCC---C--HHHHHHHHHHHHHHhcCChhhHHHHH-hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015496 215 LGALSKLMKMVKSS---F--VEEAVKALYTVSSLIRNNLAGQEMFY-VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (405)
Q Consensus 215 ~G~lp~Ll~LL~s~---~--~~v~~kAl~ALS~lir~~~~~~~~f~-~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~ 288 (405)
...=-.|-..|... . +-.|--++..|++++++.....-.|+ ..+.++..++.+..+ +.--|.-|.|.+.-+.
T Consensus 119 A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~G--SelSKtvA~fIlqKIl 196 (293)
T KOG3036|consen 119 AHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESG--SELSKTVATFILQKIL 196 (293)
T ss_pred ccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcc--cHHHHHHHHHHHHHHh
Confidence 86533444444432 2 44699999999999999776666665 578899999999887 3445667777777665
Q ss_pred hchhccCCCCc-------chhHHh-CCcHHHHH-HhccCCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 015496 289 KCQLENMHKVE-------PPLFRD-RFFLKSVV-DLTASADLDLQEKALAAIKNLLQLRTTEALVLK 346 (405)
Q Consensus 289 ~~~~~~~~~~~-------~~~l~~-~g~l~~Lv-~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~ 346 (405)
. +..- .+.|.- .-++..++ .+.+.++..+..++.++...|...+ ..|...+
T Consensus 197 l------dD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp-rar~aL~ 256 (293)
T KOG3036|consen 197 L------DDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP-RARAALR 256 (293)
T ss_pred h------ccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH-HHHHHHH
Confidence 3 1111 112211 12344444 3445678999999999999998764 3444444
No 196
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=82.18 E-value=15 Score=40.83 Aligned_cols=161 Identities=13% Similarity=0.040 Sum_probs=103.1
Q ss_pred HHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH-h-cCcHHHHHHhhcC
Q 015496 192 KISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY-V-EAGDLMLQDILGN 269 (405)
Q Consensus 192 ~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~-~-~gGi~~L~~lL~s 269 (405)
+.+..++.|+++-|...++.+++.-+++.+-.++..+++..+..++..++|+.-+ +.....|+ + ..|.+....++..
T Consensus 560 ~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~-~~~~e~si~e~~~~l~~w~~~~e~ 638 (748)
T KOG4151|consen 560 FEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWS-PLLYERSIVEYKDRLKLWNLNLEV 638 (748)
T ss_pred HHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhh-HHHHHHHhhccccCchHHHHHHHh
Confidence 3444555566666777777788888888877777777788888899999999864 55555555 3 3566666666655
Q ss_pred CCccHHHHHHHHHHHHHHhhchhccCCCCcch-hHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 015496 270 SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPP-LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDF 348 (405)
Q Consensus 270 ~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~-~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~ 348 (405)
.+.++..-++..+.-++. .....++ ...-..+...++.++.+.+..+|...+..+.++...+.+....+. .
T Consensus 639 --~~E~~~lA~a~a~a~I~s-----v~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~-~ 710 (748)
T KOG4151|consen 639 --ADEKFELAGAGALAAITS-----VVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIF-E 710 (748)
T ss_pred --hhhHHhhhccccccchhh-----cchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhc-c
Confidence 356666666655554543 2233333 333346777888889999999999998888887655433223332 3
Q ss_pred CCchHHHHHHHHH
Q 015496 349 CGLDTALERLRQQ 361 (405)
Q Consensus 349 ~Gl~~~L~~L~~~ 361 (405)
.-..+.+..++..
T Consensus 711 ~~~~~~l~~~~~~ 723 (748)
T KOG4151|consen 711 TEVMELLSGLQKL 723 (748)
T ss_pred chHHHHHHHHHHh
Confidence 3344444444443
No 197
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=81.99 E-value=30 Score=38.37 Aligned_cols=143 Identities=13% Similarity=0.100 Sum_probs=99.6
Q ss_pred cCCHHHHHH-hcCC----CCHHHHHHHHHHHHHHhc-CChHhHHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhc
Q 015496 173 LGGLSVLVG-QLNH----PDTDIRKISAWILGKASQ-NNPLVQKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIR 245 (405)
Q Consensus 173 ~Ggi~~Lv~-lL~s----~~~~Ir~~Aa~~Lg~~aq-NN~~~Q~~vle~G~lp~Ll~LL~-s~~~~v~~kAl~ALS~lir 245 (405)
+|-+.|+|. ...+ .+++++..|--+|..+.- .+..+- .-+|.|+..+. ++.|.+|..|+-+++-+.-
T Consensus 890 Ls~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~------ehlpllIt~mek~p~P~IR~NaVvglgD~~v 963 (1128)
T COG5098 890 LSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS------EHLPLLITSMEKHPIPRIRANAVVGLGDFLV 963 (1128)
T ss_pred HhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHhhCCCcceeccceeeccccce
Confidence 345667765 3333 689999988888877653 233333 35799999887 6778899999999886543
Q ss_pred CChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHH
Q 015496 246 NNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQE 325 (405)
Q Consensus 246 ~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E 325 (405)
-+ ..|++.+- ..|.+-|.+. +..+|+.+...+.+|..- + .+.-.|-++.++.+|..+|..+.+
T Consensus 964 cf----N~~~de~t-~yLyrrL~De--~~~V~rtclmti~fLila-----g-----q~KVKGqlg~ma~~L~deda~Isd 1026 (1128)
T COG5098 964 CF----NTTADEHT-HYLYRRLGDE--DADVRRTCLMTIHFLILA-----G-----QLKVKGQLGKMALLLTDEDAEISD 1026 (1128)
T ss_pred eh----hhhhHHHH-HHHHHHhcch--hhHHHHHHHHHHHHHHHc-----c-----ceeeccchhhhHhhccCCcchHHH
Confidence 32 23443333 3444445554 556899999999998741 1 233458899999999999999999
Q ss_pred HHHHHHHHHhcCC
Q 015496 326 KALAAIKNLLQLR 338 (405)
Q Consensus 326 ~al~aL~~L~~~~ 338 (405)
.|-..+..++.-.
T Consensus 1027 mar~fft~~a~Kd 1039 (1128)
T COG5098 1027 MARHFFTQIAKKD 1039 (1128)
T ss_pred HHHHHHHHHHhcc
Confidence 9998888888653
No 198
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=81.72 E-value=36 Score=38.51 Aligned_cols=123 Identities=20% Similarity=0.264 Sum_probs=82.5
Q ss_pred hhHHHhcCCHHHHHHhcCC-----CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc----CCC----HHHH
Q 015496 167 ANDLSKLGGLSVLVGQLNH-----PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK----SSF----VEEA 233 (405)
Q Consensus 167 A~~~~~~Ggi~~Lv~lL~s-----~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~----s~~----~~v~ 233 (405)
++.+.+.||+..++.+|.+ ...++-.....++..+++ -+.+++++++.|+++.|++.+. .+. ..+.
T Consensus 110 ~~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~ 188 (802)
T PF13764_consen 110 ASVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIA 188 (802)
T ss_pred HHHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHH
Confidence 5667778999999999865 234566667788888886 5899999999999999998874 322 3455
Q ss_pred HHHHHHHHHHhcCC----hhhHHHHHhcCc--------HHHHHHhhcCC--CccHHHHHHHHHHHHHHhhc
Q 015496 234 VKALYTVSSLIRNN----LAGQEMFYVEAG--------DLMLQDILGNS--SFEIRLHRKAVSLVGDLAKC 290 (405)
Q Consensus 234 ~kAl~ALS~lir~~----~~~~~~f~~~gG--------i~~L~~lL~s~--~~~~kl~~kA~~lLs~L~~~ 290 (405)
++.+--+-.++..- ......+....| +..|.+.+.++ ..+.++..-.+.+|-+|+..
T Consensus 189 E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G 259 (802)
T PF13764_consen 189 EQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYG 259 (802)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcC
Confidence 55555555444321 111112223333 67777777654 13567778888888888864
No 199
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=81.67 E-value=21 Score=32.12 Aligned_cols=108 Identities=14% Similarity=0.072 Sum_probs=74.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc--CcHHHHHHhhcCCC-HHHHHHHHHHHHH---HhcCChh
Q 015496 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSSF-VEEAVKALYTVSS---LIRNNLA 249 (405)
Q Consensus 176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~--G~lp~Ll~LL~s~~-~~v~~kAl~ALS~---lir~~~~ 249 (405)
+..+..+|+++++.-|+.++..++..+++++ .+.+.++ -.+..|+++|+.++ ..+.+-++.+|+. .++++|+
T Consensus 27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 5567789999999999999999999998864 3445444 46888999998865 4566666666665 4566777
Q ss_pred hHHHHHhcC---cHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496 250 GQEMFYVEA---GDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 250 ~~~~f~~~g---Gi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~ 289 (405)
....+.... -++.++.++++ ......++.++..+..
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~----~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD----SSCPETALDALATLLP 143 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc----cccHHHHHHHHHHHHH
Confidence 666665433 34444554443 1246678888888875
No 200
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=81.50 E-value=77 Score=35.93 Aligned_cols=225 Identities=14% Similarity=0.057 Sum_probs=128.0
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcC----CCC----HHHHHHHHHHHH
Q 015496 128 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN----HPD----TDIRKISAWILG 199 (405)
Q Consensus 128 ~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~----s~~----~~Ir~~Aa~~Lg 199 (405)
..-+.|-..++.+.+....-+.-...+.-|.+++.--.|...+.++|+++.|+.-|. .+. +++-..-..++-
T Consensus 117 gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE 196 (802)
T PF13764_consen 117 GGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIE 196 (802)
T ss_pred CCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHH
Confidence 345667677777776544434444455666666666689999999999999997663 444 566666666666
Q ss_pred HHhcCC----hHhHHHHHHcC--------cHHHHHHhhcCC----CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHH
Q 015496 200 KASQNN----PLVQKQVLELG--------ALSKLMKMVKSS----FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLML 263 (405)
Q Consensus 200 ~~aqNN----~~~Q~~vle~G--------~lp~Ll~LL~s~----~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L 263 (405)
.+.+.- ........... -+..|++.+.++ ++.+....+..|..++.+++...+.++++ +.+.
T Consensus 197 ~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~p~ 274 (802)
T PF13764_consen 197 SLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FKPY 274 (802)
T ss_pred HHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HHHh
Confidence 666421 11111111222 277788887765 35667778888999999998887777642 1222
Q ss_pred HHhh--c-CCCccHHHHHHHHHHHHHHhhchhcc-CCCCcchhHHhCCcHHHHHHhccCC--------ChH--------H
Q 015496 264 QDIL--G-NSSFEIRLHRKAVSLVGDLAKCQLEN-MHKVEPPLFRDRFFLKSVVDLTASA--------DLD--------L 323 (405)
Q Consensus 264 ~~lL--~-s~~~~~kl~~kA~~lLs~L~~~~~~~-~~~~~~~~l~~~g~l~~Lv~LL~~~--------D~~--------v 323 (405)
+++= . ..+.+..+ .+-.+..++..-..+ .....++.+.+.|+++..++.|... .++ -
T Consensus 275 l~f~~~D~~~~~~~~~---~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ps 351 (802)
T PF13764_consen 275 LDFDKFDEEHSPDEQF---KLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPS 351 (802)
T ss_pred cChhhcccccCchHHH---HHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCc
Confidence 2211 1 11112222 133333333321001 1124567788889999888776542 112 2
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHH
Q 015496 324 QEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 359 (405)
Q Consensus 324 ~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~ 359 (405)
...++..|.-|+.+.... |... ..++.+.+.+|.
T Consensus 352 Lp~iL~lL~GLa~gh~~t-Q~~~-~~~~l~~lH~LE 385 (802)
T PF13764_consen 352 LPYILRLLRGLARGHEPT-QLLI-AEQLLPLLHRLE 385 (802)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHH-HhhHHHHHHHhh
Confidence 335678888888764433 3333 344446666665
No 201
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=81.48 E-value=27 Score=40.81 Aligned_cols=69 Identities=20% Similarity=0.184 Sum_probs=43.3
Q ss_pred cHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015496 259 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336 (405)
Q Consensus 259 Gi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~ 336 (405)
-+++|.+.|.+. +.-+..+|+..++-|+.. +--.+..+ ..+++.+.-+|-+++.=+|..++..|.....
T Consensus 657 llPLl~Q~ltD~--EE~Viv~aL~~ls~Lik~-----~ll~K~~v--~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 657 LLPLLQQGLTDG--EEAVIVSALGSLSILIKL-----GLLRKPAV--KDILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred HHHHHHHhccCc--chhhHHHHHHHHHHHHHh-----cccchHHH--HHHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 345555666654 455777888888888752 11111112 2355556667888888888888888777664
No 202
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=81.04 E-value=24 Score=39.99 Aligned_cols=126 Identities=17% Similarity=0.099 Sum_probs=86.5
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCC----HHHHHHHHHHHHHHhcCChHhHH
Q 015496 135 IAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPD----TDIRKISAWILGKASQNNPLVQK 210 (405)
Q Consensus 135 ~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~----~~Ir~~Aa~~Lg~~aqNN~~~Q~ 210 (405)
..+.++...+.++-....+.+-++++++..+|...+... .+|.+++.|..++ +.+...|+.+|.++..|.|.==.
T Consensus 575 ~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~-~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~ 653 (1005)
T KOG2274|consen 575 LTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQER-LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLP 653 (1005)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHH-HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCcc
Confidence 345555555555555556777777887766666665543 7999999998765 88999999999999998654333
Q ss_pred HHHHcCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHH
Q 015496 211 QVLELGALSKLMKMV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL 261 (405)
Q Consensus 211 ~vle~G~lp~Ll~LL-~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~ 261 (405)
.-+-.-++|++.++. .+++.++-..+--+|+.++....+.....-..+|..
T Consensus 654 ~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~ 705 (1005)
T KOG2274|consen 654 NLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHN 705 (1005)
T ss_pred HHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCcc
Confidence 333345788888876 455556666777788888877666555555555544
No 203
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=80.87 E-value=17 Score=39.29 Aligned_cols=149 Identities=14% Similarity=0.133 Sum_probs=94.7
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCc
Q 015496 181 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM-VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 259 (405)
Q Consensus 181 ~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~L-L~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gG 259 (405)
++|.+.++-+|...+..++.+--+.. +.|++..|+.. +++.++.||..|+.||+-+|-..+. .
T Consensus 523 ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------~ 586 (926)
T COG5116 523 ELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------L 586 (926)
T ss_pred HHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------h
Confidence 46677888899888877766544322 24788888888 5666789999999999988766543 3
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCCh
Q 015496 260 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 339 (405)
Q Consensus 260 i~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~ 339 (405)
+.-.+++|..+ .+.-+|--+++++.-.|.+. .+ .-.+..|-.|......-+|..|+-+++-++...
T Consensus 587 lv~tvelLs~s-hN~hVR~g~AvaLGiacag~---G~---------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~- 652 (926)
T COG5116 587 LVGTVELLSES-HNFHVRAGVAVALGIACAGT---GD---------KVATDILEALMYDTNDFVRQSAMIAVGMILMQC- 652 (926)
T ss_pred hhHHHHHhhhc-cchhhhhhhHHHhhhhhcCC---cc---------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhc-
Confidence 44455666544 36668888888888888642 11 112333344444556667788888887766431
Q ss_pred hhHHHHHhcCCchHHHHHHHHHHHHhhh
Q 015496 340 TEALVLKDFCGLDTALERLRQQLQEVML 367 (405)
Q Consensus 340 ~~~~~v~~~~Gl~~~L~~L~~~~~~l~~ 367 (405)
...+.|-+.....++..++.
T Consensus 653 --------n~~Lnp~v~~I~k~f~~vI~ 672 (926)
T COG5116 653 --------NPELNPNVKRIIKKFNRVIV 672 (926)
T ss_pred --------CcccChhHHHHHHHHHHHHh
Confidence 22234444555555555443
No 204
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=80.52 E-value=6.1 Score=36.32 Aligned_cols=69 Identities=16% Similarity=0.132 Sum_probs=57.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcC---ChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHH
Q 015496 176 LSVLVGQLNHPDTDIRKISAWILGKASQN---NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE 252 (405)
Q Consensus 176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqN---N~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~ 252 (405)
++.++++.-+++..+|..|..+|..+.+. ||. -.+|.|+.|..++++.++.+|...+..+...++....
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~--------~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPK--------QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH--------HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 56777877889999999999999988864 552 3689999999999999999999999999877776433
No 205
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=80.46 E-value=13 Score=32.68 Aligned_cols=90 Identities=17% Similarity=0.175 Sum_probs=67.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHH
Q 015496 235 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD 314 (405)
Q Consensus 235 kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~ 314 (405)
..+-.|+-+++..+.+.. .++..|.+=|+++ ++.++..|+.++-.++. |.+......+.+.+++..|+.
T Consensus 23 ~~ileicD~In~~~~~~k-----~a~ral~krl~~~--n~~vql~AL~LLe~~vk----NCG~~fh~evas~~fl~~l~~ 91 (142)
T cd03569 23 ASILEICDMIRSKDVQPK-----YAMRALKKRLLSK--NPNVQLYALLLLESCVK----NCGTHFHDEVASREFMDELKD 91 (142)
T ss_pred HHHHHHHHHHhCCCCCHH-----HHHHHHHHHHcCC--ChHHHHHHHHHHHHHHH----HCCHHHHHHHhhHHHHHHHHH
Confidence 355567777776543322 3566777778775 67889999999999886 355566667788899999999
Q ss_pred hccC-CChHHHHHHHHHHHHHh
Q 015496 315 LTAS-ADLDLQEKALAAIKNLL 335 (405)
Q Consensus 315 LL~~-~D~~v~E~al~aL~~L~ 335 (405)
++.. .+..|+++++..+..-+
T Consensus 92 l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 92 LIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHcccCCHHHHHHHHHHHHHHH
Confidence 9974 58899999998888776
No 206
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=80.15 E-value=67 Score=32.03 Aligned_cols=150 Identities=16% Similarity=0.189 Sum_probs=90.0
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC---CchhHHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhc--
Q 015496 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI---DNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKASQ-- 203 (405)
Q Consensus 131 ~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i---DnA~~~~~~Ggi~~Lv~lL~s--~~~~Ir~~Aa~~Lg~~aq-- 203 (405)
+++-.++..++.+. + +++.-|+..+.-++-++ +.+..+.+. ..|+|.+.+.. ..+.+|..++.+||-++-
T Consensus 86 tL~~~~~k~lkkg~-~-~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~ 162 (309)
T PF05004_consen 86 TLLDALLKSLKKGK-S-EEQALAARALALLALTLGAGEDSEEIFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVG 162 (309)
T ss_pred HHHHHHHHHhccCC-H-HHHHHHHHHHHHHhhhcCCCccHHHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhh
Confidence 45555666666654 3 66667777777766553 466676663 57777777753 456788888878777643
Q ss_pred -CChHhHHHHHHcCcHHHHH--HhhcC----------CCHHHHHHHHHHHHHHhcCChhh-HHHHHhcCcHHHHHHhhcC
Q 015496 204 -NNPLVQKQVLELGALSKLM--KMVKS----------SFVEEAVKALYTVSSLIRNNLAG-QEMFYVEAGDLMLQDILGN 269 (405)
Q Consensus 204 -NN~~~Q~~vle~G~lp~Ll--~LL~s----------~~~~v~~kAl~ALS~lir~~~~~-~~~f~~~gGi~~L~~lL~s 269 (405)
+.+......+ ..+..+. ...++ +++.+...|+.+-+-++..-+.. ...+ -...++.|..+|.+
T Consensus 163 ~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~-~~~~~~~l~~lL~s 239 (309)
T PF05004_consen 163 GSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDL-LEEALPALSELLDS 239 (309)
T ss_pred cCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHhcC
Confidence 3333333111 1222111 11221 12457778888888877665552 2222 13468999999998
Q ss_pred CCccHHHHHHHHHHHHHHh
Q 015496 270 SSFEIRLHRKAVSLVGDLA 288 (405)
Q Consensus 270 ~~~~~kl~~kA~~lLs~L~ 288 (405)
+ +..+|.-|--+|.-|.
T Consensus 240 ~--d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 240 D--DVDVRIAAGEAIALLY 256 (309)
T ss_pred C--CHHHHHHHHHHHHHHH
Confidence 7 6778887777766554
No 207
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=80.04 E-value=6.5 Score=32.13 Aligned_cols=86 Identities=20% Similarity=0.165 Sum_probs=63.1
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015496 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (405)
Q Consensus 131 ~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~ 210 (405)
+..++++..+.++. +-.|..++..|..|++.-+ ......-+.+..++..|+++++=|=-.|..+++.++.-.|.
T Consensus 3 ~~~~~al~~L~dp~--~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~--- 76 (92)
T PF10363_consen 3 ETLQEALSDLNDPL--PPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD--- 76 (92)
T ss_pred HHHHHHHHHccCCC--cchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH---
Confidence 45677778887775 4578899999999998887 11222235677778899999999999999999999986653
Q ss_pred HHHHcCcHHHHHHhhcC
Q 015496 211 QVLELGALSKLMKMVKS 227 (405)
Q Consensus 211 ~vle~G~lp~Ll~LL~s 227 (405)
..+|.|++...+
T Consensus 77 -----~vl~~L~~~y~~ 88 (92)
T PF10363_consen 77 -----EVLPILLDEYAD 88 (92)
T ss_pred -----HHHHHHHHHHhC
Confidence 345666665543
No 208
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.98 E-value=31 Score=38.52 Aligned_cols=103 Identities=16% Similarity=0.108 Sum_probs=63.9
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhhHHH
Q 015496 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEM 253 (405)
Q Consensus 175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~-~~v~~kAl~ALS~lir~~~~~~~~ 253 (405)
-|..+..+|.++++.+++.||..|.++. |+|..-+. +-..+++++-..+ ..++.-.+--|+.+-..+....+.
T Consensus 244 ~i~~i~~lL~stssaV~fEaa~tlv~lS-~~p~alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~ 317 (948)
T KOG1058|consen 244 YIRCIYNLLSSTSSAVIFEAAGTLVTLS-NDPTALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQG 317 (948)
T ss_pred HHHHHHHHHhcCCchhhhhhcceEEEcc-CCHHHHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHH
Confidence 3556667788788888888888887776 45654443 3356777775544 345544555555554333332221
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (405)
Q Consensus 254 f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~ 290 (405)
-+--++.+|.++ +..+++|+..+.-+|+.+
T Consensus 318 -----l~mDvLrvLss~--dldvr~Ktldi~ldLvss 347 (948)
T KOG1058|consen 318 -----LIMDVLRVLSSP--DLDVRSKTLDIALDLVSS 347 (948)
T ss_pred -----HHHHHHHHcCcc--cccHHHHHHHHHHhhhhh
Confidence 122334556665 677899999999999864
No 209
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.43 E-value=28 Score=39.70 Aligned_cols=129 Identities=13% Similarity=0.104 Sum_probs=77.1
Q ss_pred CcHHHHHHhhc------CCCH--HHHHHHHHHHHHHh---cCChh---hHHHHHhcCcHHHHHHhhcCCCccHHHHHHHH
Q 015496 216 GALSKLMKMVK------SSFV--EEAVKALYTVSSLI---RNNLA---GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAV 281 (405)
Q Consensus 216 G~lp~Ll~LL~------s~~~--~v~~kAl~ALS~li---r~~~~---~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~ 281 (405)
|.++.++++|. .+.. ..+..|+.++|+++ ....+ ..+.|+. ..+...++++ ---+|.+||
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv----~hVfP~f~s~--~g~Lrarac 483 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLV----NHVFPEFQSP--YGYLRARAC 483 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHH----HHhhHhhcCc--hhHHHHHHH
Confidence 56777888887 2222 23456777777655 32222 3444443 3444446665 345899999
Q ss_pred HHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhcc-CCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHH
Q 015496 282 SLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA-SADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 359 (405)
Q Consensus 282 ~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~-~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~ 359 (405)
|.++.++.... .++ ..+ ...+....+.|. +.+..|+-.|+.||..+..........++ .-+++....|.
T Consensus 484 ~vl~~~~~~df--~d~---~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~--~hvp~~mq~lL 553 (1010)
T KOG1991|consen 484 WVLSQFSSIDF--KDP---NNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS--AHVPPIMQELL 553 (1010)
T ss_pred HHHHHHHhccC--CCh---HHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh--hhhhHHHHHHH
Confidence 99999984211 111 112 234455556666 66889999999999999986543333343 44555555555
No 210
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.13 E-value=2 Score=43.64 Aligned_cols=64 Identities=13% Similarity=0.057 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 015496 193 ISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNLAGQEMFYV 256 (405)
Q Consensus 193 ~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~--~~~v~~kAl~ALS~lir~~~~~~~~f~~ 256 (405)
+-.+.||+++..++..|+.|.+.||++.+++-..-+ ++-+++.+++++-.+..+|..+|+.+.+
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 356789999999999999999999999999876533 4678999999999999999999887754
No 211
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=78.97 E-value=16 Score=30.29 Aligned_cols=92 Identities=13% Similarity=0.096 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHhcCChHhHHHHH-HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhh
Q 015496 189 DIRKISAWILGKASQNNPLVQKQVL-ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL 267 (405)
Q Consensus 189 ~Ir~~Aa~~Lg~~aqNN~~~Q~~vl-e~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL 267 (405)
+||..|..=|-+=-.++--+-..+. ..+.+..|+..++.++......++--|+.+++ +|++...+.+.|+.+.|.++=
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr 80 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLR 80 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHH
Confidence 5676666544332222222333333 45678889999988877778889999999887 578888999999999987765
Q ss_pred cCCCccHHHHHHHHHH
Q 015496 268 GNSSFEIRLHRKAVSL 283 (405)
Q Consensus 268 ~s~~~~~kl~~kA~~l 283 (405)
... +..++...--+
T Consensus 81 ~~~--~~~~~~~id~i 94 (98)
T PF14726_consen 81 PNV--EPNLQAEIDEI 94 (98)
T ss_pred hcC--CHHHHHHHHHH
Confidence 432 44455544433
No 212
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=78.02 E-value=24 Score=32.87 Aligned_cols=103 Identities=10% Similarity=0.112 Sum_probs=66.0
Q ss_pred CCCCHHHHHHHHHHHHHHhcCChHhHHHHHH----------------cCcHHHHHHhhcCCC------HHHHHHHHHHHH
Q 015496 184 NHPDTDIRKISAWILGKASQNNPLVQKQVLE----------------LGALSKLMKMVKSSF------VEEAVKALYTVS 241 (405)
Q Consensus 184 ~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle----------------~G~lp~Ll~LL~s~~------~~v~~kAl~ALS 241 (405)
..++...--.++.+|+|++....-+. .+++ ..++..|+..+..+. ..--....+-++
T Consensus 5 ~~~~~~~adl~~MLLsNlT~~~~~~~-~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~ 83 (192)
T PF04063_consen 5 TDPKSPLADLACMLLSNLTRSDSGCE-KLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA 83 (192)
T ss_pred cCCCcchHHHHHHHHHHhccchHHHH-HHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence 34445566677888888887544333 2322 247888888886621 122345778889
Q ss_pred HHhcCChhhHHHHHhcC--c--HHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496 242 SLIRNNLAGQEMFYVEA--G--DLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (405)
Q Consensus 242 ~lir~~~~~~~~f~~~g--G--i~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~ 290 (405)
|+.+ .+.+++.|++.. . +..|+.++.+. +.-=|+-++.+|.|.|..
T Consensus 84 NlS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~--s~iRR~Gva~~IrNccFd 133 (192)
T PF04063_consen 84 NLSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHK--SVIRRGGVAGTIRNCCFD 133 (192)
T ss_pred HhcC-CHHHHHHHhCchhhhhHHHHHHHHhccC--cHHHHHHHHHHHHHhhcc
Confidence 9976 588999998642 3 45555555554 333355689999999974
No 213
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=77.83 E-value=80 Score=31.64 Aligned_cols=146 Identities=15% Similarity=0.044 Sum_probs=87.4
Q ss_pred CCHHHHHHHHHHHHHHhcCChHhHHHHHHc-------C----cHHHHHHhhcCCC-----HHHH-HHHHHHHHHHhcCCh
Q 015496 186 PDTDIRKISAWILGKASQNNPLVQKQVLEL-------G----ALSKLMKMVKSSF-----VEEA-VKALYTVSSLIRNNL 248 (405)
Q Consensus 186 ~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~-------G----~lp~Ll~LL~s~~-----~~v~-~kAl~ALS~lir~~~ 248 (405)
..-++|..|+.|+-....+|++.|..+++. + ....|+.-|-+.+ +..+ =.|...++-++++++
T Consensus 50 ~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~ 129 (312)
T PF04869_consen 50 QPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNP 129 (312)
T ss_dssp S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-H
T ss_pred cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCH
Confidence 468899999999999999999999999984 1 1223554443221 2233 368889999999999
Q ss_pred hhHHHHHhc------C------cHHHHHHhhcCC---CccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh-CCcHHHH
Q 015496 249 AGQEMFYVE------A------GDLMLQDILGNS---SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD-RFFLKSV 312 (405)
Q Consensus 249 ~~~~~f~~~------g------Gi~~L~~lL~s~---~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~-~g~l~~L 312 (405)
.+.+..... . -++.+..+|... +.+.+++.--+.+|..-+. .++.....|.+ ..-++.|
T Consensus 130 ~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~-----e~p~AV~~FL~~~s~l~~L 204 (312)
T PF04869_consen 130 EAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLF-----ECPDAVNDFLSEGSNLQSL 204 (312)
T ss_dssp HHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHT-----T-HHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHh-----CCHHHHHHHHcCcchHHHH
Confidence 998887643 1 234455555431 2366666655556655553 24444445544 4789999
Q ss_pred HHhccC---CChHHHHHHHHHHHHHhc
Q 015496 313 VDLTAS---ADLDLQEKALAAIKNLLQ 336 (405)
Q Consensus 313 v~LL~~---~D~~v~E~al~aL~~L~~ 336 (405)
++.... .++-+|--++..|+-+..
T Consensus 205 i~~~~~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 205 IEFSNQSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp HHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence 997533 255566555555555544
No 214
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=76.79 E-value=63 Score=36.08 Aligned_cols=97 Identities=20% Similarity=0.145 Sum_probs=66.1
Q ss_pred HHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC
Q 015496 239 TVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS 318 (405)
Q Consensus 239 ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~ 318 (405)
+|.++.-+++.....|++.||...+..+++.- +...+++++...+.+++... ...+....+....+ ...-.++..
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f-~~~~~~~~il~~l~n~~~~~---~~~~~~~~~~~~~~-~~f~~~~~~ 568 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESF-DNEELHRKILGLLGNLAEVL---ELRELLMIFEFIDF-SVFKVLLNK 568 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHh---hhhhhhhHHHHHHH-HHHHHHHhh
Confidence 45577788999999999999999999999976 46678999999999998642 12222222222222 122224444
Q ss_pred C-ChHHHHHHHHHHHHHhcCChh
Q 015496 319 A-DLDLQEKALAAIKNLLQLRTT 340 (405)
Q Consensus 319 ~-D~~v~E~al~aL~~L~~~~~~ 340 (405)
- +.+.-..++..|..++..++.
T Consensus 569 w~~~ersY~~~siLa~ll~~~~~ 591 (699)
T KOG3665|consen 569 WDSIERSYNAASILALLLSDSEK 591 (699)
T ss_pred cchhhHHHHHHHHHHHHHhCCCc
Confidence 3 447777888888888876543
No 215
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=76.52 E-value=13 Score=35.66 Aligned_cols=178 Identities=15% Similarity=0.133 Sum_probs=97.7
Q ss_pred cCCCCHHHHHHhHHHHHHHHHHcCCCCH----HH-HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCC-
Q 015496 102 VQRLSPSELKKRQMEIKELMEKLKTPSD----AQ-LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGG- 175 (405)
Q Consensus 102 ~~~~s~e~l~~r~~~L~~a~~~~~~~~d----~~-lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Gg- 175 (405)
..+++++++ ..|+..++....++. .. ....+...+.+ .+.+.+.-++|-++-++-+...+..+...++
T Consensus 33 ~~~l~~~el----~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~ 106 (268)
T PF08324_consen 33 ELKLSEEEL----ESLESLLSALKSTSAYHSDLSAWLILLLKILLS--WPPESRFPALDLLRLAALHPPASDLLASEDSG 106 (268)
T ss_dssp CT-S-HHHH----HHHHHHHCCCCCC-SS---HHHHHHHHHHHHCC--S-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH
T ss_pred ccCCCHHHH----HHHHHHHHHhcCCCccccchhHHHHHHHHHHHh--CCCccchhHHhHHHHHHhCccHHHHHhccccc
Confidence 457888765 346666665443221 22 23333343333 3456789999999998887776666655542
Q ss_pred -HHHHHHhcC----CCCHHHHHHHHHHHHHHhcCChHhHHHHHHc-C-cHHHHHHhhcCC----CHHHHHHHH---HHHH
Q 015496 176 -LSVLVGQLN----HPDTDIRKISAWILGKASQNNPLVQKQVLEL-G-ALSKLMKMVKSS----FVEEAVKAL---YTVS 241 (405)
Q Consensus 176 -i~~Lv~lL~----s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~-G-~lp~Ll~LL~s~----~~~v~~kAl---~ALS 241 (405)
...+..++. +..+..+..++++++|+.++ +..++.++++ + .+...+..+.+. +..++..+. +-+|
T Consensus 107 ~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nls 185 (268)
T PF08324_consen 107 IADLLSTLISSGSSSSPPANQMLALRLLANLFSH-PPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLS 185 (268)
T ss_dssp -HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTS-CCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCC-CccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHH
Confidence 344444432 36799999999999999986 4466666654 3 344444444443 344554333 3333
Q ss_pred HHhcCChh-hHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496 242 SLIRNNLA-GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 242 ~lir~~~~-~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~ 289 (405)
........ ..... .-+..+.+.+.....+....-+.+-++.+|+.
T Consensus 186 v~~~~~~~~~~~~~---~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~ 231 (268)
T PF08324_consen 186 VLLHKNRSDEEWQS---ELLSSIIEVLSREESDEEALYRLLVALGTLLS 231 (268)
T ss_dssp HHHHHCTS-CCHHH---HHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCChHHHH---HHHHHHHHHhccccCCHHHHHHHHHHHHHHhc
Confidence 33332221 10000 12344555333222356677899999999984
No 216
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=76.42 E-value=32 Score=37.40 Aligned_cols=147 Identities=14% Similarity=0.127 Sum_probs=83.4
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhH
Q 015496 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQ 209 (405)
Q Consensus 131 ~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL-~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q 209 (405)
.+|+.......+- +.+-|..+.++++-|+-........ -+.-|...| +.+.-+.+..+..+|..+..|.|+.+
T Consensus 375 rLv~~I~sfvhD~--SD~FKiI~ida~rsLsl~Fp~k~~s----~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~sk 448 (898)
T COG5240 375 RLVNLIPSFVHDM--SDGFKIIAIDALRSLSLLFPSKKLS----YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSK 448 (898)
T ss_pred HHHHHHHHHHHhh--ccCceEEeHHHHHHHHhhCcHHHHH----HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHH
Confidence 4555555555543 3455666666666665443322221 123333322 34556667777777777777777777
Q ss_pred HHHHHc-----------CcHHHHHHhhcCC---------------------CHHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 015496 210 KQVLEL-----------GALSKLMKMVKSS---------------------FVEEAVKALYTVSSLIRNNLAGQEMFYVE 257 (405)
Q Consensus 210 ~~vle~-----------G~lp~Ll~LL~s~---------------------~~~v~~kAl~ALS~lir~~~~~~~~f~~~ 257 (405)
+.+++. ...-.++.+|..+ +.-+|..|+.|||-..-+- .+.|...
T Consensus 449 EraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~---~d~~~~~ 525 (898)
T COG5240 449 ERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNI---SDVVSPQ 525 (898)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCc---cccccHH
Confidence 666542 1222344444322 1124667788887654331 1223333
Q ss_pred CcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015496 258 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (405)
Q Consensus 258 gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~ 288 (405)
.....|.+|+.+. |..+|-+|.|++.++-
T Consensus 526 sv~~~lkRclnD~--DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 526 SVENALKRCLNDQ--DDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHHhhcc--cHHHHHHHHHHHHhhh
Confidence 4567888899875 6679999999999984
No 217
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=76.42 E-value=23 Score=29.50 Aligned_cols=90 Identities=13% Similarity=0.139 Sum_probs=62.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHH
Q 015496 235 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD 314 (405)
Q Consensus 235 kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~ 314 (405)
+.+-.|+-++++++..... .+..|..-|.++ +.+++.+|+.++-+++.+ .++.+...+.+..++..++.
T Consensus 19 ~~i~~i~d~~~~~~~~~~~-----~~~~l~kRl~~~--~~~~~lkaL~lLe~lvkN----~g~~f~~~i~~~~~~~~l~~ 87 (115)
T cd00197 19 PLIMEICDLINETNVGPKE-----AVDAIKKRINNK--NPHVVLKALTLLEYCVKN----CGERFHQEVASNDFAVELLK 87 (115)
T ss_pred HHHHHHHHHHHCCCccHHH-----HHHHHHHHhcCC--cHHHHHHHHHHHHHHHHH----ccHHHHHHHHHhHHHHHHHH
Confidence 4555666676655333222 456677777765 788999999999999974 67777777877788877766
Q ss_pred h-----cc-CCChHHHHHHHHHHHHHh
Q 015496 315 L-----TA-SADLDLQEKALAAIKNLL 335 (405)
Q Consensus 315 L-----L~-~~D~~v~E~al~aL~~L~ 335 (405)
+ .. ..+..++++++..+...+
T Consensus 88 ~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 88 FDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred hhccccccCCCChHHHHHHHHHHHHHh
Confidence 4 11 126789999988776654
No 218
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=76.41 E-value=61 Score=34.58 Aligned_cols=131 Identities=13% Similarity=0.188 Sum_probs=87.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCC---hhhHHHHHhcCcHHHHHHhhcCCC-----ccHHHHHHHHHHHHHHhh
Q 015496 218 LSKLMKMVKSSFVEEAVKALYTVSSLIRNN---LAGQEMFYVEAGDLMLQDILGNSS-----FEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 218 lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~---~~~~~~f~~~gGi~~L~~lL~s~~-----~~~kl~~kA~~lLs~L~~ 289 (405)
...+..++...+++.|-.|+.-+--.+++. ..+...++++=|+..+-+++.+++ .+.-++.-++.++..+|+
T Consensus 13 ~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~ 92 (698)
T KOG2611|consen 13 LDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR 92 (698)
T ss_pred hhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence 344677777777777888888888888874 334566888889999999997532 244467778889999996
Q ss_pred chhccCCCCcchhHHhCCcHHHHHHhccCC-ChH------HHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHH
Q 015496 290 CQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLD------LQEKALAAIKNLLQLRTTEALVLKDFCGLDTALE 356 (405)
Q Consensus 290 ~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~-D~~------v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~ 356 (405)
.. .-..-+.++ .-+|.|.+++... |.| +.+.+-.+|...+......+..+ .+|..+.+.
T Consensus 93 ~p----ElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Li--a~G~~~~~~ 158 (698)
T KOG2611|consen 93 VP----ELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLI--ASGGLRVIA 158 (698)
T ss_pred Ch----hhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHH--hcCchHHHH
Confidence 41 111111222 3467777777653 555 88999999999988754444444 455544444
No 219
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=76.34 E-value=41 Score=38.31 Aligned_cols=208 Identities=13% Similarity=0.118 Sum_probs=124.0
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC----CchhH--HHh----cCCHHHHHHhc
Q 015496 114 QMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI----DNAND--LSK----LGGLSVLVGQL 183 (405)
Q Consensus 114 ~~~L~~a~~~~~~~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i----DnA~~--~~~----~Ggi~~Lv~lL 183 (405)
..|+.+++=.=+-|...++-++.++.|.+++.- .--..+++.+..=+... ..|.. +.+ ...+|.|++..
T Consensus 798 l~Wv~KaLl~R~~~~s~~ia~klld~Ls~~~~g-~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~ 876 (1030)
T KOG1967|consen 798 LAWVTKALLLRNHPESSEIAEKLLDLLSGPSTG-SPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKF 876 (1030)
T ss_pred HHHHHHHHHHcCCcccchHHHHHHHhcCCcccc-chHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHh
Confidence 455555432113344456667777777775531 11122222222111110 11222 333 23567777777
Q ss_pred CCCCHHHHHHHHHHHHHHhcCChHhHHHHHH-cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHH
Q 015496 184 NHPDTDIRKISAWILGKASQNNPLVQKQVLE-LGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 262 (405)
Q Consensus 184 ~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle-~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~ 262 (405)
....-.+|..-..+|+++-.|-|. |...=+ ...+|.|++-|+-++..+|..++..|.-++..+++-+..-++ --++.
T Consensus 877 ~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~ 954 (1030)
T KOG1967|consen 877 ETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPY 954 (1030)
T ss_pred ccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHH
Confidence 767788999999999999998887 332222 267888999998888888999999999887776665443321 23445
Q ss_pred HHHhhcCCCc-cHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHH
Q 015496 263 LQDILGNSSF-EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALA 329 (405)
Q Consensus 263 L~~lL~s~~~-~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~ 329 (405)
+..+=++++. ..-+|.-|..++..|.+.. +.+...+ ....++..|...|..+.--+|+.|.+
T Consensus 955 lLsls~~~~n~~~~VR~~ALqcL~aL~~~~---P~~~l~~--fr~~Vl~al~k~LdDkKRlVR~eAv~ 1017 (1030)
T KOG1967|consen 955 LLSLSSDNDNNMMVVREDALQCLNALTRRL---PTKSLLS--FRPLVLRALIKILDDKKRLVRKEAVD 1017 (1030)
T ss_pred HHhcCCCCCcchhHHHHHHHHHHHHHhccC---CCccccc--ccHHHHHHhhhccCcHHHHHHHHHHH
Confidence 4444333321 2678899999999998632 2222111 13457778888887766667776664
No 220
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=76.09 E-value=7.9 Score=34.29 Aligned_cols=90 Identities=16% Similarity=0.180 Sum_probs=66.9
Q ss_pred HHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHh
Q 015496 236 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDL 315 (405)
Q Consensus 236 Al~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~L 315 (405)
.+-.|+-+++..+..-. ..+..|..=|.+. ++.++..|+.++-.++. |.+..+...+.+..|+..|+.+
T Consensus 20 ~il~icD~I~~~~~~~k-----~a~ral~KRl~~~--n~~v~l~AL~LLe~~vk----NCG~~fh~evask~Fl~eL~kl 88 (144)
T cd03568 20 LILDVCDKVKSDENGAK-----DCLKAIMKRLNHK--DPNVQLRALTLLDACAE----NCGKRFHQEVASRDFTQELKKL 88 (144)
T ss_pred HHHHHHHHHhcCCccHH-----HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----HCCHHHHHHHhhHHHHHHHHHH
Confidence 34445556655433221 2456666667765 67889999999999886 4666677778888999999999
Q ss_pred ccC-CChHHHHHHHHHHHHHhc
Q 015496 316 TAS-ADLDLQEKALAAIKNLLQ 336 (405)
Q Consensus 316 L~~-~D~~v~E~al~aL~~L~~ 336 (405)
+.. .+..|+++++..|...+.
T Consensus 89 ~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 89 INDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred hcccCCHHHHHHHHHHHHHHHH
Confidence 988 699999999998888763
No 221
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=75.88 E-value=21 Score=39.68 Aligned_cols=154 Identities=8% Similarity=0.050 Sum_probs=94.8
Q ss_pred HHHHHHHHHccCCCCc-hhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHH-cCcHHHHHHhhcCC
Q 015496 151 QRALQELLILVEPIDN-ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLE-LGALSKLMKMVKSS 228 (405)
Q Consensus 151 ~~AL~~L~~Lve~iDn-A~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle-~G~lp~Ll~LL~s~ 228 (405)
..+|.++.+|...-++ ...+.+--+++.+-.++..+++.+|..|+..+.|+.-.+--.-..+.+ ...++....++...
T Consensus 560 ~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~ 639 (748)
T KOG4151|consen 560 FEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA 639 (748)
T ss_pred HHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh
Confidence 3444445544432222 234666666666666677889999999999999999875555555666 36677777777664
Q ss_pred CHHHHHHHHHH---HHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh
Q 015496 229 FVEEAVKALYT---VSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (405)
Q Consensus 229 ~~~v~~kAl~A---LS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~ 305 (405)
.+.....+..+ |-.+..++-+. ..-...|...+..++.+. +..+|...+..+.|+.. ...+..+.+..
T Consensus 640 ~E~~~lA~a~a~a~I~sv~~n~c~~--~~~~~~~~e~~~~~i~~~--~~~~qhrgl~~~ln~~~-----~~~ei~~~~~~ 710 (748)
T KOG4151|consen 640 DEKFELAGAGALAAITSVVENHCSR--ILELLEWLEILVRAIQDE--DDEIQHRGLVIILNLFE-----ALFEIAEKIFE 710 (748)
T ss_pred hhHHhhhccccccchhhcchhhhhh--HHHhhcchHHHHHhhcCc--hhhhhhhhhhhhhhHHH-----HHHHHHHHhcc
Confidence 44443333333 44555444332 233357889999999886 56789999888888542 23334444444
Q ss_pred CCcHHHHH
Q 015496 306 RFFLKSVV 313 (405)
Q Consensus 306 ~g~l~~Lv 313 (405)
...+..+.
T Consensus 711 ~~~~~~l~ 718 (748)
T KOG4151|consen 711 TEVMELLS 718 (748)
T ss_pred chHHHHHH
Confidence 44444333
No 222
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.72 E-value=1.3e+02 Score=34.28 Aligned_cols=169 Identities=17% Similarity=0.112 Sum_probs=96.1
Q ss_pred HHHHHHHcCC---CCHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHccCCCCchhH------------HHhcCCHHHHH
Q 015496 117 IKELMEKLKT---PSDAQLIQIAIDDLNNST-LSLEDSQRALQELLILVEPIDNAND------------LSKLGGLSVLV 180 (405)
Q Consensus 117 L~~a~~~~~~---~~d~~lmk~al~~L~~~~-~t~e~k~~AL~~L~~Lve~iDnA~~------------~~~~Ggi~~Lv 180 (405)
+.+++.++.. |.-.--+.+....+++.. .+....+..++...+.+.+.|.=-- +..-..+|-+.
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~ 808 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLS 808 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHH
Confidence 3556655532 222223334444444322 2444455566666666666653211 12234556666
Q ss_pred H-hcCC---CCHHHHHHHHHHHHHHhcC-ChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh-HHHH
Q 015496 181 G-QLNH---PDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-QEMF 254 (405)
Q Consensus 181 ~-lL~s---~~~~Ir~~Aa~~Lg~~aqN-N~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~-~~~f 254 (405)
. +.+. ..++.|...-.+|++++|- ++-++...- -.+..+++.+++++...|..++.+++.+|+-.... .+.|
T Consensus 809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~--~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~ 886 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA--VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF 886 (982)
T ss_pred HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH--HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence 5 3332 2245555556888888873 343443321 45667777788665667999999999988754432 2233
Q ss_pred HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496 255 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (405)
Q Consensus 255 ~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~ 290 (405)
. ..+..++.+.+.+ ..+-+||-|+.++..+..+
T Consensus 887 ~--ev~~~Il~l~~~d-~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 887 H--EVLQLILSLETTD-GSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred H--HHHHHHHHHHccC-CchhhHHHHHHHHHHHHhc
Confidence 2 2344555555554 4778999999999999853
No 223
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.49 E-value=18 Score=40.37 Aligned_cols=141 Identities=13% Similarity=0.119 Sum_probs=95.0
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 015496 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY 255 (405)
Q Consensus 176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~ 255 (405)
++-|..+.++.+..+-..|..+||-+|+++-.+... .+.-|+.++++.+..|-..|+-.|--++..+|.-...+
T Consensus 394 LrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~t-----CL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~i- 467 (968)
T KOG1060|consen 394 LRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVTDT-----CLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEI- 467 (968)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchhhH-----HHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHH-
Confidence 334445566667678899999999999998777665 45789999999888888889999999988776543332
Q ss_pred hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015496 256 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (405)
Q Consensus 256 ~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~ 335 (405)
+..|..++.+-. -..-|.-.+|+++-.|.. -|... ..+++.++.-..+....++-+++..-..|.
T Consensus 468 ----i~~La~lldti~-vp~ARA~IiWLige~~e~-----vpri~-----PDVLR~laksFs~E~~evKlQILnL~aKLy 532 (968)
T KOG1060|consen 468 ----LFQLARLLDTIL-VPAARAGIIWLIGEYCEI-----VPRIA-----PDVLRKLAKSFSDEGDEVKLQILNLSAKLY 532 (968)
T ss_pred ----HHHHHHHhhhhh-hhhhhceeeeeehhhhhh-----cchhc-----hHHHHHHHHhhccccchhhHHHHHhhhhhe
Confidence 455666665432 233566678999888742 12111 245566666666666677766666655554
Q ss_pred cC
Q 015496 336 QL 337 (405)
Q Consensus 336 ~~ 337 (405)
-.
T Consensus 533 l~ 534 (968)
T KOG1060|consen 533 LT 534 (968)
T ss_pred Ee
Confidence 43
No 224
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=74.29 E-value=79 Score=35.62 Aligned_cols=171 Identities=13% Similarity=0.118 Sum_probs=104.2
Q ss_pred HHHHhHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCC
Q 015496 109 ELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLS--LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP 186 (405)
Q Consensus 109 ~l~~r~~~L~~a~~~~~~~~d~~lmk~al~~L~~~~~t--~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~ 186 (405)
+...|.++++..+.-..+-+...++......+.+.... -..+..+...+..++-.... +.++...-+..-++.+..
T Consensus 172 et~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~--~~vk~elr~~~~~lc~d~ 249 (759)
T KOG0211|consen 172 ETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPD--DAVKRELRPIVQSLCQDD 249 (759)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCCh--HHHHHHHHHHHHhhcccc
Confidence 34557777766655433222233333333333332111 11244454555544433332 566665566666677888
Q ss_pred CHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHh
Q 015496 187 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDI 266 (405)
Q Consensus 187 ~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~l 266 (405)
++.+|..++.=+|++++- ..+.....+.+|.+++|...+.+.||..|+-++.++.......-+ ...-+.+.++..
T Consensus 250 ~~~Vr~~~a~~l~~~a~~---~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d--~~~~~~~~l~~~ 324 (759)
T KOG0211|consen 250 TPMVRRAVASNLGNIAKV---LESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDD--VVKSLTESLVQA 324 (759)
T ss_pred chhhHHHHHhhhHHHHHH---HHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchh--hhhhhhHHHHHH
Confidence 999999999999998865 555788889999999999999999999888888887665433211 112355666776
Q ss_pred hcCCCccHHHHHHHHHHHHHHh
Q 015496 267 LGNSSFEIRLHRKAVSLVGDLA 288 (405)
Q Consensus 267 L~s~~~~~kl~~kA~~lLs~L~ 288 (405)
..++ +.+++..+.-....|.
T Consensus 325 ~~d~--~~~v~~~~~~~~~~L~ 344 (759)
T KOG0211|consen 325 VEDG--SWRVSYMVADKFSELS 344 (759)
T ss_pred hcCh--hHHHHHHHhhhhhhHH
Confidence 6665 4445555554444443
No 225
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.19 E-value=38 Score=33.95 Aligned_cols=141 Identities=16% Similarity=0.138 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC--CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcC-C
Q 015496 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI--DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQN-N 205 (405)
Q Consensus 129 d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i--DnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqN-N 205 (405)
.-..+++++..|.+.+ =+.++.+|..+..|.+-. ...+.+++ .+..+++-+++....|-..||.+++.+.++ |
T Consensus 86 p~~al~~~l~~L~s~d--W~~~vdgLn~irrLs~fh~e~l~~~L~~--vii~vvkslKNlRS~VsraA~~t~~difs~ln 161 (334)
T KOG2933|consen 86 PEAALKQALKKLSSDD--WEDKVDGLNSIRRLSEFHPESLNPMLHE--VIIAVVKSLKNLRSAVSRAACMTLADIFSSLN 161 (334)
T ss_pred HHHHHHHHHHHhchHH--HHHHhhhHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888887753 478888888888776432 22334443 477778888999999999999999999985 3
Q ss_pred hHhHHHHHHcCcHHHHH-HhhcCC---CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHH
Q 015496 206 PLVQKQVLELGALSKLM-KMVKSS---FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAV 281 (405)
Q Consensus 206 ~~~Q~~vle~G~lp~Ll-~LL~s~---~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~ 281 (405)
..+++ .+..++ .|+... +.-+++.|--||-.++.+-.++. .++.|+.+++.. ..+++++++
T Consensus 162 ~~i~~------~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~-------~L~~L~~~~~~~--n~r~r~~a~ 226 (334)
T KOG2933|consen 162 NSIDQ------ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK-------LLRKLIPILQHS--NPRVRAKAA 226 (334)
T ss_pred HHHHH------HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH-------HHHHHHHHHhhh--chhhhhhhh
Confidence 33333 233333 333332 23578888888888887654431 235556666654 567888887
Q ss_pred HHHHHHh
Q 015496 282 SLVGDLA 288 (405)
Q Consensus 282 ~lLs~L~ 288 (405)
....+..
T Consensus 227 ~~~~~~v 233 (334)
T KOG2933|consen 227 LCFSRCV 233 (334)
T ss_pred ccccccc
Confidence 6666643
No 226
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=73.89 E-value=16 Score=36.73 Aligned_cols=63 Identities=13% Similarity=0.174 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHhcCChHhHHHHHHcC--cHHHHHHhhcCCC---HHHHHHHHHHHHHHhcCChhhHH
Q 015496 189 DIRKISAWILGKASQNNPLVQKQVLELG--ALSKLMKMVKSSF---VEEAVKALYTVSSLIRNNLAGQE 252 (405)
Q Consensus 189 ~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G--~lp~Ll~LL~s~~---~~v~~kAl~ALS~lir~~~~~~~ 252 (405)
.+|..|..++..+. .++..+..+++.+ .+..|+++++.+. ..++.-|+++|.+|+++..-..+
T Consensus 237 ~iRllAi~~l~~~~-~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~ 304 (329)
T PF06012_consen 237 QIRLLAIANLVYIH-PESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSD 304 (329)
T ss_pred HHHHHHHHHHHhhC-CCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHH
Confidence 46777777776666 5677888888887 9999999998764 46899999999999987654444
No 227
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=73.60 E-value=27 Score=40.84 Aligned_cols=109 Identities=19% Similarity=0.132 Sum_probs=72.8
Q ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHH---HhcCChhhHH
Q 015496 177 SVLVGQLNH-PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS---LIRNNLAGQE 252 (405)
Q Consensus 177 ~~Lv~lL~s-~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~---lir~~~~~~~ 252 (405)
+.+..++++ .....|..|...|..++++-. ....=--.+|.++.++.++...||..|+-+|.. ++|..++.-.
T Consensus 425 s~lts~IR~lk~~~tK~~ALeLl~~lS~~i~---de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 425 SVLTSCIRALKTIQTKLAALELLQELSTYID---DEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHhhhcc---hHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 344455554 567788899999999998632 222223578999999999889999998888875 4555544433
Q ss_pred HHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496 253 MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 253 ~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~ 289 (405)
.+.-.=-++.|.+++.+. ....+|.--+..|..|+.
T Consensus 502 niF~eYlfP~L~~l~~d~-~~~~vRiayAsnla~LA~ 537 (1431)
T KOG1240|consen 502 NIFPEYLFPHLNHLLNDS-SAQIVRIAYASNLAQLAK 537 (1431)
T ss_pred hhhHhhhhhhhHhhhccC-ccceehhhHHhhHHHHHH
Confidence 333333578888888774 244566666666666654
No 228
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=73.23 E-value=1.1e+02 Score=33.52 Aligned_cols=106 Identities=23% Similarity=0.176 Sum_probs=74.2
Q ss_pred hHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 015496 168 NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN 247 (405)
Q Consensus 168 ~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~ 247 (405)
.+|+ .|-+..+++.+.+++..+|...+.+|+-++-+-.+.- .++-.|.+..|.+-+-.-.+.||..|+.+|+-.-..
T Consensus 86 ~~~V-~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eID-e~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~- 162 (885)
T COG5218 86 EELV-AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREID-EVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEM- 162 (885)
T ss_pred hHHH-HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc-
Confidence 4444 3567788888899999999999999999986544333 455568888888777666778999999999976432
Q ss_pred hhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHH
Q 015496 248 LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAV 281 (405)
Q Consensus 248 ~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~ 281 (405)
....+.++ ...|..+++.+. +..+|+-|+
T Consensus 163 ~~neen~~----~n~l~~~vqnDP-S~EVRr~al 191 (885)
T COG5218 163 ELNEENRI----VNLLKDIVQNDP-SDEVRRLAL 191 (885)
T ss_pred cCChHHHH----HHHHHHHHhcCc-HHHHHHHHH
Confidence 22222332 347777787663 445777653
No 229
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.19 E-value=52 Score=36.58 Aligned_cols=144 Identities=16% Similarity=0.102 Sum_probs=85.3
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 015496 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (405)
Q Consensus 175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f 254 (405)
|.-.-+++|+++--.=+.-.--.+.-+.-.|.+.-+.++ ..+-.=|.+.++...--|+..++|+ +..+..+.|
T Consensus 75 GhmEaV~LLss~kysEKqIGYl~is~L~n~n~dl~klvi-----n~iknDL~srn~~fv~LAL~~I~ni--G~re~~ea~ 147 (938)
T KOG1077|consen 75 GHMEAVNLLSSNKYSEKQIGYLFISLLLNENSDLMKLVI-----NSIKNDLSSRNPTFVCLALHCIANI--GSREMAEAF 147 (938)
T ss_pred chHHHHHHhhcCCccHHHHhHHHHHHHHhcchHHHHHHH-----HHHHhhhhcCCcHHHHHHHHHHHhh--ccHhHHHHh
Confidence 344556777653222222222233333333433333322 3333334444555556788899987 345556666
Q ss_pred HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHH
Q 015496 255 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334 (405)
Q Consensus 255 ~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L 334 (405)
.. -+ -++|-+++...-+|.||+-++-.|.+. .|+ .+...+|..+++.+|...|..+...+...+..|
T Consensus 148 ~~--DI---~KlLvS~~~~~~vkqkaALclL~L~r~-----spD---l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~l 214 (938)
T KOG1077|consen 148 AD--DI---PKLLVSGSSMDYVKQKAALCLLRLFRK-----SPD---LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEAL 214 (938)
T ss_pred hh--hh---HHHHhCCcchHHHHHHHHHHHHHHHhc-----Ccc---ccChhhHHHHHHHHhCccccceeeehHHHHHHH
Confidence 42 22 356666555677999999999998863 332 233358999999999988888887777777777
Q ss_pred hcCC
Q 015496 335 LQLR 338 (405)
Q Consensus 335 ~~~~ 338 (405)
+...
T Consensus 215 vk~~ 218 (938)
T KOG1077|consen 215 VKKN 218 (938)
T ss_pred HHcC
Confidence 7653
No 230
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=72.78 E-value=1.1e+02 Score=30.96 Aligned_cols=147 Identities=16% Similarity=0.188 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCc----HHHH
Q 015496 188 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG----DLML 263 (405)
Q Consensus 188 ~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gG----i~~L 263 (405)
+++--.+-..+-.+.. .+..-+.+++..-+.........+.=.+..-|......+++.+......|+..+- .+.-
T Consensus 139 ~~iaL~cg~mlrEcir-he~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~ 217 (342)
T KOG1566|consen 139 PEIALTCGNMLRECIR-HEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVY 217 (342)
T ss_pred hHHHHHHHHHHHHHHh-hHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHH
Confidence 5665555555666554 4667777777777788887777766567777888888888888888888887664 3446
Q ss_pred HHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCC-cchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChh
Q 015496 264 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV-EPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTT 340 (405)
Q Consensus 264 ~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~-~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~ 340 (405)
-.++.+. +.-.++.+..++.++... .++.. ....+.+..-++-+..+|+.+...+|-.|-....-.+..+..
T Consensus 218 ~~Ll~s~--Nyvtkrqs~kllg~llld---r~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK 290 (342)
T KOG1566|consen 218 EKLLRSE--NYVTKRQSLKLLGELLLD---RSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNK 290 (342)
T ss_pred HHHhccc--ceehHHHHHHhHHHHHhC---CCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCC
Confidence 6677876 455789999999999853 23322 233445557888999999999889998888888888877544
No 231
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=72.13 E-value=89 Score=34.66 Aligned_cols=135 Identities=15% Similarity=0.107 Sum_probs=92.6
Q ss_pred HhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChh
Q 015496 171 SKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLA 249 (405)
Q Consensus 171 ~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s-~~~~v~~kAl~ALS~lir~~~~ 249 (405)
++...+|.|...++..+..+|..+..++.+++.-=+ -.+++.-.+|.|-.+... ....++..++-|++-++ .
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~----q 458 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI----Q 458 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH----H
Confidence 344578888888899999999999999999996422 345566678888877543 44678999999999988 3
Q ss_pred hHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCC
Q 015496 250 GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASAD 320 (405)
Q Consensus 250 ~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D 320 (405)
.++.+.-..-+.++..+.+.. ++.+....+.+...+..-+ .+. ..+.-+.++|.++-+...+.
T Consensus 459 ~lD~~~v~d~~lpi~~~~~~~--dp~iv~~~~~i~~~l~~~~---~~g---~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 459 RLDKAAVLDELLPILKCIKTR--DPAIVMGFLRIYEALALII---YSG---VEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHHHhHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHhhc---ccc---eeeehhhhhhhhhhhhhccc
Confidence 344444344556666666664 5667777777777776421 111 23445678888877765554
No 232
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=72.01 E-value=51 Score=32.11 Aligned_cols=141 Identities=17% Similarity=0.135 Sum_probs=80.3
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcC--CCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 015496 179 LVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS--SFVEEAVKALYTVSSLIRNNLAGQEMFYV 256 (405)
Q Consensus 179 Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s--~~~~v~~kAl~ALS~lir~~~~~~~~f~~ 256 (405)
|=.+|.++++.+|..|..+|+.+..+-|.-. +...-+..|+..+.+ ++.....-++.++..+++...-...
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~---- 76 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPE---- 76 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChh----
Confidence 3357889999999999999999998766321 223334555554432 2222233346666666644321111
Q ss_pred cCcHHHHHHhhcC---CCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh--CCcHHHHHHhccCC-ChHHHHHHHHH
Q 015496 257 EAGDLMLQDILGN---SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD--RFFLKSVVDLTASA-DLDLQEKALAA 330 (405)
Q Consensus 257 ~gGi~~L~~lL~s---~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~--~g~l~~Lv~LL~~~-D~~v~E~al~a 330 (405)
.+..++..+.+. .......|..+..++..|..+. ...+.+ ..++..++++.... |+...-.+-..
T Consensus 77 -~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~--------~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l 147 (262)
T PF14500_consen 77 -SAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH--------REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKL 147 (262)
T ss_pred -hHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh--------HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 133344444332 1224556777778888877531 122322 36777888877665 88777666665
Q ss_pred HHHHh
Q 015496 331 IKNLL 335 (405)
Q Consensus 331 L~~L~ 335 (405)
+..+.
T Consensus 148 ~~~i~ 152 (262)
T PF14500_consen 148 LKVIL 152 (262)
T ss_pred HHHHH
Confidence 55554
No 233
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=71.31 E-value=1.1e+02 Score=29.97 Aligned_cols=140 Identities=14% Similarity=0.103 Sum_probs=83.8
Q ss_pred HHhcCCHHHHHHhcCCCC----HHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC----HHHHHHHHHHHH
Q 015496 170 LSKLGGLSVLVGQLNHPD----TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF----VEEAVKALYTVS 241 (405)
Q Consensus 170 ~~~~Ggi~~Lv~lL~s~~----~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~----~~v~~kAl~ALS 241 (405)
+.=.+.+|.++.-++.++ ...-..+|..|+.+|.++. ...+..++....... .+.-..++..|+
T Consensus 107 ~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~ 178 (262)
T PF14225_consen 107 FLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKGRFRDKDDFLSQVVSYLR 178 (262)
T ss_pred HHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 333456777777666655 1334567788888885432 345666666554432 222233333333
Q ss_pred HHhcCC-hhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCC
Q 015496 242 SLIRNN-LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASAD 320 (405)
Q Consensus 242 ~lir~~-~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D 320 (405)
..+ |.. ....+..|..+|.++ ..-+|.++...|..|..+- + .... ....++..+.++|..
T Consensus 179 ---~~f~P~~-----~~~~l~~Ll~lL~n~--~~w~~~~~L~iL~~ll~~~----d--~~~~-~~~dlispllrlL~t-- 239 (262)
T PF14225_consen 179 ---EAFFPDH-----EFQILTFLLGLLENG--PPWLRRKTLQILKVLLPHV----D--MRSP-HGADLISPLLRLLQT-- 239 (262)
T ss_pred ---HHhCchh-----HHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhccc----c--CCCC-cchHHHHHHHHHhCC--
Confidence 222 221 223567888888876 4568999999999998541 1 1111 344688889999866
Q ss_pred hHHHHHHHHHHHHHhcC
Q 015496 321 LDLQEKALAAIKNLLQL 337 (405)
Q Consensus 321 ~~v~E~al~aL~~L~~~ 337 (405)
+....|+..|....+.
T Consensus 240 -~~~~eAL~VLd~~v~~ 255 (262)
T PF14225_consen 240 -DLWMEALEVLDEIVTR 255 (262)
T ss_pred -ccHHHHHHHHHHHHhh
Confidence 5566777777776654
No 234
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=71.23 E-value=98 Score=29.57 Aligned_cols=176 Identities=16% Similarity=0.144 Sum_probs=102.4
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcC-c-HHHHHHhhcC----CCHHHHHHHHHHHHHHhcCChh
Q 015496 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELG-A-LSKLMKMVKS----SFVEEAVKALYTVSSLIRNNLA 249 (405)
Q Consensus 176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G-~-lp~Ll~LL~s----~~~~v~~kAl~ALS~lir~~~~ 249 (405)
...++..+.+=.++-++.+.-++.-++-+ |..-..+...+ + ...+..++.. ..+..+--++..++|+..+ +.
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~-~~ 142 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSH-PP 142 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTS-CC
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCC-Cc
Confidence 44555655554556689999999888875 44444443332 2 3444444433 2356788899999999875 56
Q ss_pred hHHHHHhcCc--H-HHHHHhhcCCC-ccHHHHHHHHHHHHHHhhchhccC-CCCcchhHHhCCcHHHHHHhccC--CChH
Q 015496 250 GQEMFYVEAG--D-LMLQDILGNSS-FEIRLHRKAVSLVGDLAKCQLENM-HKVEPPLFRDRFFLKSVVDLTAS--ADLD 322 (405)
Q Consensus 250 ~~~~f~~~gG--i-~~L~~lL~s~~-~~~kl~~kA~~lLs~L~~~~~~~~-~~~~~~~l~~~g~l~~Lv~LL~~--~D~~ 322 (405)
.+..+.+... + +.+..+..+.. .+..+|.-++.++.|++.....+. +.+. ...++..+++.+.. .|.+
T Consensus 143 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~-----~~~ll~~i~~~~~~~~~d~E 217 (268)
T PF08324_consen 143 GRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEW-----QSELLSSIIEVLSREESDEE 217 (268)
T ss_dssp CHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCH-----HHHHHHHHHHHCHCCHTSHH
T ss_pred cHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHH-----HHHHHHHHHHHhccccCCHH
Confidence 6666665433 2 22222222210 146678889999999975421111 1111 11245666664333 5999
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHH
Q 015496 323 LQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 359 (405)
Q Consensus 323 v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~ 359 (405)
..-.++.||++|+..+....+... ..|+...+....
T Consensus 218 a~~R~LvAlGtL~~~~~~~~~~~~-~l~~~~~~~~~~ 253 (268)
T PF08324_consen 218 ALYRLLVALGTLLSSSDSAKQLAK-SLDVKSVLSKKA 253 (268)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHCC-CCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccChhHHHHHH-HcChHHHHHHHH
Confidence 999999999999977655444443 456655555544
No 235
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=71.01 E-value=14 Score=33.10 Aligned_cols=104 Identities=19% Similarity=0.099 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCC-CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHh
Q 015496 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLV 208 (405)
Q Consensus 130 ~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~-iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~ 208 (405)
++..++.++.|.++... +....++-|.+-|.. .|-|- -+|.+.+..++.-=.+...=-+..|...||++-.+-
T Consensus 21 a~Qt~~lielLk~~~~~--~~~~lldLL~~RV~PGVD~AA-~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGY--- 94 (154)
T PF11791_consen 21 AEQTAELIELLKNPPAG--EEAFLLDLLTNRVPPGVDEAA-YVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGY--- 94 (154)
T ss_dssp HHHHHHHHHHHHS--TT---HHHHHHHHHHSS--TT-HHH-HHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SST---
T ss_pred HHHHHHHHHHHhCCCCc--cHHHHHHHHHhcCCCCCChHH-HHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCC---
Confidence 45555556666655432 233444445554433 23332 233333443333211111122566777777766431
Q ss_pred HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 015496 209 QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN 247 (405)
Q Consensus 209 Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~ 247 (405)
-+.+||.+|.++++.+...|.-+|++.+--+
T Consensus 95 --------NV~~LI~~L~~~d~~lA~~Aa~aLk~TlLvy 125 (154)
T PF11791_consen 95 --------NVQPLIDLLKSDDEELAEEAAEALKNTLLVY 125 (154)
T ss_dssp --------THHHHHHGG--G-TTTHHHHHHHHHT--TTC
T ss_pred --------cHHHHHHHHcCCcHHHHHHHHHHHHhhHHHH
Confidence 2678888887777777777888888765444
No 236
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=70.52 E-value=33 Score=37.77 Aligned_cols=168 Identities=14% Similarity=0.141 Sum_probs=103.4
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCC--HHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHH
Q 015496 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPD--TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK 223 (405)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~--~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~ 223 (405)
+.++|..=+.-|.+-+++. -.++++...++.|+..+...+ .++...... ++.....-+ ++.+.+|.|++
T Consensus 267 s~~eK~~Ff~~L~~~l~~~--pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k-~~k~ld~~e------yq~~i~p~l~k 337 (690)
T KOG1243|consen 267 SVEEKQKFFSGLIDRLDNF--PEEIIASKVLPILLAALEFGDAASDFLTPLFK-LGKDLDEEE------YQVRIIPVLLK 337 (690)
T ss_pred cHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhccccchhhhhHHHH-hhhhccccc------cccchhhhHHH
Confidence 5677877666666644333 357788888888888776544 333332222 222222222 34468899999
Q ss_pred hhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhH
Q 015496 224 MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLF 303 (405)
Q Consensus 224 LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l 303 (405)
|+++.+..+|...|.-+=..+++-. +..++.-.++.+...+.+. +..+|..++-.+..|+.- -++ ..
T Consensus 338 LF~~~Dr~iR~~LL~~i~~~i~~Lt---~~~~~d~I~phv~~G~~DT--n~~Lre~Tlksm~~La~k----L~~----~~ 404 (690)
T KOG1243|consen 338 LFKSPDRQIRLLLLQYIEKYIDHLT---KQILNDQIFPHVALGFLDT--NATLREQTLKSMAVLAPK----LSK----RN 404 (690)
T ss_pred HhcCcchHHHHHHHHhHHHHhhhcC---HHhhcchhHHHHHhhcccC--CHHHHHHHHHHHHHHHhh----hch----hh
Confidence 9999988899888777777776543 3455666788888888875 567899999988888742 111 12
Q ss_pred HhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015496 304 RDRFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (405)
Q Consensus 304 ~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~ 335 (405)
.....++.+..+-...+..++....-+|+.+.
T Consensus 405 Ln~Ellr~~ar~q~d~~~~irtntticlgki~ 436 (690)
T KOG1243|consen 405 LNGELLRYLARLQPDEHGGIRTNTTICLGKIA 436 (690)
T ss_pred hcHHHHHHHHhhCccccCcccccceeeecccc
Confidence 22334445554444334455555544444444
No 237
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=70.50 E-value=79 Score=33.76 Aligned_cols=132 Identities=11% Similarity=0.048 Sum_probs=92.3
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcC---ChHhHHHHHHcCcHHHHHHhhcCCC------HH-HHHHHHHHHHHHhcCCh
Q 015496 179 LVGQLNHPDTDIRKISAWILGKASQN---NPLVQKQVLELGALSKLMKMVKSSF------VE-EAVKALYTVSSLIRNNL 248 (405)
Q Consensus 179 Lv~lL~s~~~~Ir~~Aa~~Lg~~aqN---N~~~Q~~vle~G~lp~Ll~LL~s~~------~~-v~~kAl~ALS~lir~~~ 248 (405)
+..++...+.+-|+.|.-.++.++.| |...++.+++.=|++.+-++|.+.+ +. .+.-++.-|.+.||.-+
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 55667778889999999999999998 4456777889888999999998653 22 36778888999998743
Q ss_pred hh-HHHHHhcCcHHHHHHhhcCCC-----ccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC
Q 015496 249 AG-QEMFYVEAGDLMLQDILGNSS-----FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS 318 (405)
Q Consensus 249 ~~-~~~f~~~gGi~~L~~lL~s~~-----~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~ 318 (405)
-+ ...++ +-|+.|..++.... ++..+...+-.+++..+. .+.-...++..|.++.+.+.-.-
T Consensus 96 lAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~------~e~G~~~Lia~G~~~~~~Q~y~~ 163 (698)
T KOG2611|consen 96 LASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVAT------AEAGLMTLIASGGLRVIAQMYEL 163 (698)
T ss_pred hccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhc------CCchhHHHHhcCchHHHHHHHhC
Confidence 22 22232 57899999886321 122345556666666663 24445578888999998876433
No 238
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=70.13 E-value=61 Score=35.86 Aligned_cols=170 Identities=15% Similarity=0.132 Sum_probs=97.6
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015496 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (405)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL 225 (405)
+..+|-.=+..|.+++..++.+-.+.+ .+|+|+..|.+. .+.--..=++-.+++.-+ +.......+|.|..++
T Consensus 286 dn~qKs~Flk~Ls~~ip~fp~rv~~~k--iLP~L~~el~n~--~~vp~~LP~v~~i~~~~s---~~~~~~~~~p~l~pi~ 358 (700)
T KOG2137|consen 286 DNSQKSSFLKGLSKLIPTFPARVLFQK--ILPTLVAELVNT--KMVPIVLPLVLLIAEGLS---QNEFGPKMLPALKPIY 358 (700)
T ss_pred CcHHHHHHHHHHHHhhccCCHHHHHHh--hhhHHHHHhccc--cccccccchhhhhhhccc---hhhhhhhhhHHHHHHh
Confidence 556777777888888888877766665 488888877432 111111112222332211 1112234567777776
Q ss_pred cC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHH
Q 015496 226 KS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (405)
Q Consensus 226 ~s-~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~ 304 (405)
+. .+..+..--+--+..|.+--+ ..++....+++|...+++. +..+|..++..+...+.. .+ -.++
T Consensus 359 ~~~~~~~~~l~i~e~mdlL~~Kt~---~e~~~~~IlplL~~S~~~~--~~~iQ~~~L~~lptv~e~----iD----~~~v 425 (700)
T KOG2137|consen 359 SASDPKQALLFILENMDLLKEKTP---PEEVKEKILPLLYRSLEDS--DVQIQELALQILPTVAES----ID----VPFV 425 (700)
T ss_pred ccCCcccchhhHHhhHHHHHhhCC---hHHHHHHHHHHHHHHhcCc--chhhHHHHHHhhhHHHHh----cc----HHHH
Confidence 63 222333222333333333222 2345567788888888875 677888888888877642 12 1345
Q ss_pred hCCcHHHHHHh-ccCCChHHHHHHHHHHHHHh
Q 015496 305 DRFFLKSVVDL-TASADLDLQEKALAAIKNLL 335 (405)
Q Consensus 305 ~~g~l~~Lv~L-L~~~D~~v~E~al~aL~~L~ 335 (405)
+.-++|.+-.+ +.+.+..++..++-++..++
T Consensus 426 k~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~ 457 (700)
T KOG2137|consen 426 KQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI 457 (700)
T ss_pred HHHHHHHhhcchhcccchHHHHHHHHHHHHHH
Confidence 56677776665 34457777777777777776
No 239
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=69.87 E-value=28 Score=30.15 Aligned_cols=73 Identities=14% Similarity=0.022 Sum_probs=57.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 217 ~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~-~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~ 289 (405)
++..|-+-|.++++.++..|+..|-.++.|+ +.....+....-+..|..++.+......++.|++.++..-..
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 4566777788888888999999999999995 445566666778889999988764444499999999998875
No 240
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=69.84 E-value=8.8 Score=43.33 Aligned_cols=135 Identities=16% Similarity=0.149 Sum_probs=89.9
Q ss_pred CchhHHHhcCCHHHHHHhcCC--------CCHHHHHHHHHHHHHHhcCChHhHHHHHHc--------CcHHHHHHhhcCC
Q 015496 165 DNANDLSKLGGLSVLVGQLNH--------PDTDIRKISAWILGKASQNNPLVQKQVLEL--------GALSKLMKMVKSS 228 (405)
Q Consensus 165 DnA~~~~~~Ggi~~Lv~lL~s--------~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~--------G~lp~Ll~LL~s~ 228 (405)
.-|++|.++||+..++.+..- +..++-..|..+|.-+. --|..|.++... .||..+++...-.
T Consensus 592 ~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t-~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~ 670 (1516)
T KOG1832|consen 592 PAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVT-SIPDIQKALAHATLSNNRAYDGIAIILDAANGS 670 (1516)
T ss_pred hHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeE-ecchHHHHHHHHHhhcccccCceEEEeeccccc
Confidence 569999999999999987642 34567778887776555 468888887653 3555555544321
Q ss_pred ----CHHHHHHHHHHHHHHhcCChh-----------------------------------hHHHHHhcCcHHHHHHhhcC
Q 015496 229 ----FVEEAVKALYTVSSLIRNNLA-----------------------------------GQEMFYVEAGDLMLQDILGN 269 (405)
Q Consensus 229 ----~~~v~~kAl~ALS~lir~~~~-----------------------------------~~~~f~~~gGi~~L~~lL~s 269 (405)
+++++..|+..|-|++-.-|. ....+...+||.+|+.+|+.
T Consensus 671 ~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~ 750 (1516)
T KOG1832|consen 671 NSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQY 750 (1516)
T ss_pred ccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhc
Confidence 356677777666655433221 23445567899999999974
Q ss_pred C---CccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhC
Q 015496 270 S---SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR 306 (405)
Q Consensus 270 ~---~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~ 306 (405)
. .+...+|.-|+..|.-|++ ++..++.+.+-
T Consensus 751 k~P~t~aD~IRalAc~~L~GLaR------~~tVrQIltKL 784 (1516)
T KOG1832|consen 751 KNPPTTADCIRALACRVLLGLAR------DDTVRQILTKL 784 (1516)
T ss_pred cCCCCcHHHHHHHHHHHHhcccc------CcHHHHHHHhC
Confidence 3 2345688889999999986 34555555443
No 241
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=69.74 E-value=19 Score=31.35 Aligned_cols=90 Identities=19% Similarity=0.209 Sum_probs=66.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHH
Q 015496 235 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD 314 (405)
Q Consensus 235 kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~ 314 (405)
..+..|+-+++..+.+... .+..|.+-|+++ +++++..|+.++-.++.+ .++.+...+.+..|+..|..
T Consensus 24 ~~~l~icD~i~~~~~~~ke-----a~~~l~krl~~~--~~~vq~~aL~lld~lvkN----cg~~f~~ev~~~~fl~~l~~ 92 (140)
T PF00790_consen 24 SLILEICDLINSSPDGAKE-----AARALRKRLKHG--NPNVQLLALTLLDALVKN----CGPRFHREVASKEFLDELVK 92 (140)
T ss_dssp HHHHHHHHHHHTSTTHHHH-----HHHHHHHHHTTS--SHHHHHHHHHHHHHHHHH----SHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHH-----HHHHHHHHHhCC--CHHHHHHHHHHHHHHHHc----CCHHHHHHHhHHHHHHHHHH
Confidence 3555678888876544332 456777778875 678999999999999874 55666667777789999999
Q ss_pred hccCC-ChH---HHHHHHHHHHHHh
Q 015496 315 LTASA-DLD---LQEKALAAIKNLL 335 (405)
Q Consensus 315 LL~~~-D~~---v~E~al~aL~~L~ 335 (405)
++... ... |+++++..|....
T Consensus 93 l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 93 LIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHccCCCCchhHHHHHHHHHHHHHH
Confidence 88754 333 8999988777665
No 242
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.40 E-value=73 Score=35.54 Aligned_cols=192 Identities=15% Similarity=0.183 Sum_probs=99.6
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhc-CChH----hHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 015496 179 LVGQLNHPDTDIRKISAWILGKASQ-NNPL----VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM 253 (405)
Q Consensus 179 Lv~lL~s~~~~Ir~~Aa~~Lg~~aq-NN~~----~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~ 253 (405)
|.+-|+.+|..+|..|+.++-++-- -.|. -.+.+++ +-...|.+||+++-+.+|.-|+--++-++--+ ..
T Consensus 179 l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f----We 253 (1005)
T KOG1949|consen 179 LWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSKF----WE 253 (1005)
T ss_pred HHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH----HH
Confidence 3356677899999999999887652 1122 2222332 23567889999999999988888777665321 11
Q ss_pred HHhcC-cHHHHHHhhc---CCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHH
Q 015496 254 FYVEA-GDLMLQDILG---NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALA 329 (405)
Q Consensus 254 f~~~g-Gi~~L~~lL~---s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~ 329 (405)
++=.+ ...+|..+.. -+ +...+|..+.--|..++.+ |.....+ +. ++|+|-..|......|+-.+..
T Consensus 254 ~iP~~i~~~ll~kI~d~~a~d-t~s~VR~svf~gl~~~l~n------p~sh~~l-e~-~Lpal~~~l~D~se~VRvA~vd 324 (1005)
T KOG1949|consen 254 MIPPTILIDLLKKITDELAFD-TSSDVRCSVFKGLPMILDN------PLSHPLL-EQ-LLPALRYSLHDNSEKVRVAFVD 324 (1005)
T ss_pred HcCHHHHHHHHHHHHHHhhhc-cchheehhHhcCcHHHHcC------ccchhHH-HH-HHHhcchhhhccchhHHHHHHH
Confidence 11111 1222222221 11 1234555666666666642 2111122 11 2334444555555566655555
Q ss_pred HHHHHhcCChhhHHHHHhcCCchHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHhhhccccccchhc
Q 015496 330 AIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCW 402 (405)
Q Consensus 330 aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~~~~l~~~~~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~~~~ 402 (405)
.|..+-.. ...+.+. -+..+..|.+|. +| | .+.-|+.+-+++++=|..=+.|..|
T Consensus 325 ~ll~ik~v--ra~~f~~-I~~~d~~l~~L~--------~d-~------~~v~rr~~~li~~s~lP~~k~ee~~ 379 (1005)
T KOG1949|consen 325 MLLKIKAV--RAAKFWK-ICPMDHILVRLE--------TD-S------RPVSRRLVSLIFNSFLPVNKPEEVW 379 (1005)
T ss_pred HHHHHHhh--hhhhhhc-cccHHHHHHHHh--------cc-c------cHHHHHHHHHHHHhhcCCCCcHHHH
Confidence 55555322 1122222 444445555553 12 3 3445777777787776544444444
No 243
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=69.37 E-value=1.1e+02 Score=29.17 Aligned_cols=140 Identities=16% Similarity=0.027 Sum_probs=87.6
Q ss_pred HHHHHH-hcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 015496 176 LSVLVG-QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (405)
Q Consensus 176 i~~Lv~-lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f 254 (405)
++.|+. +-+..+++++......|...+.++..+... .+..|..+...++...+.-++..+..+...++...
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 455554 446789999999999999999876122222 34566666766665555556666666665554322
Q ss_pred HhcCcHHHHHHh--------hcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhc-cCCChHHHH
Q 015496 255 YVEAGDLMLQDI--------LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT-ASADLDLQE 325 (405)
Q Consensus 255 ~~~gGi~~L~~l--------L~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL-~~~D~~v~E 325 (405)
+.+..++.. ..++........-.+..+..+|.. .|+ .-..+++.+..+| ...+...+.
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~-----~p~-----~g~~ll~~ls~~L~~~~~~~~~a 140 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCS-----RPD-----HGVDLLPLLSGCLNQSCDEVAQA 140 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHh-----Chh-----hHHHHHHHHHHHHhccccHHHHH
Confidence 222222222 112223444455556788999964 333 2235778888888 777888999
Q ss_pred HHHHHHHHHhc
Q 015496 326 KALAAIKNLLQ 336 (405)
Q Consensus 326 ~al~aL~~L~~ 336 (405)
-++.+|..|..
T Consensus 141 lale~l~~Lc~ 151 (234)
T PF12530_consen 141 LALEALAPLCE 151 (234)
T ss_pred HHHHHHHHHHH
Confidence 99999999984
No 244
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=68.96 E-value=18 Score=32.49 Aligned_cols=111 Identities=18% Similarity=0.258 Sum_probs=47.9
Q ss_pred ccCCCCHHHHHHhHHHHHHHHHHcCCCC-HHHHHHHHHHHhhcCCCCHHHHHHH--HHHHHH---ccCCCCchhHHH---
Q 015496 101 DVQRLSPSELKKRQMEIKELMEKLKTPS-DAQLIQIAIDDLNNSTLSLEDSQRA--LQELLI---LVEPIDNANDLS--- 171 (405)
Q Consensus 101 ~~~~~s~e~l~~r~~~L~~a~~~~~~~~-d~~lmk~al~~L~~~~~t~e~k~~A--L~~L~~---Lve~iDnA~~~~--- 171 (405)
++.|++.+.. ..|-+.++. .|. +.+.+...+.-=..++.++-.++.| |..+.. -+.-|+-...+.
T Consensus 15 pPlPL~a~Qt----~~lielLk~--~~~~~~~~lldLL~~RV~PGVD~AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLG 88 (154)
T PF11791_consen 15 PPLPLNAEQT----AELIELLKN--PPAGEEAFLLDLLTNRVPPGVDEAAYVKAEFLAAIAKGEISSPLISPAEAVELLG 88 (154)
T ss_dssp ------HHHH----HHHHHHHHS----TT-HHHHHHHHHHSS--TT-HHHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHT
T ss_pred CCCCCCHHHH----HHHHHHHhC--CCCccHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHcCCccCCCcCHHHHHHHHh
Confidence 4567887644 223333331 221 3333333333333456666555444 333332 111233222222
Q ss_pred h-cCC--HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcC
Q 015496 172 K-LGG--LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS 227 (405)
Q Consensus 172 ~-~Gg--i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s 227 (405)
. +|| +.+||.+|.++++++...|+.+|.+.. +=++++..+..+.+.
T Consensus 89 tM~GGYNV~~LI~~L~~~d~~lA~~Aa~aLk~Tl----------LvyDaf~dv~~~ak~ 137 (154)
T PF11791_consen 89 TMLGGYNVQPLIDLLKSDDEELAEEAAEALKNTL----------LVYDAFNDVAELAKA 137 (154)
T ss_dssp TS-SSTTHHHHHHGG--G-TTTHHHHHHHHHT------------TTCCHHHHHHHHHHT
T ss_pred hccCCCcHHHHHHHHcCCcHHHHHHHHHHHHhhH----------HHHhhHHHHHHHHHc
Confidence 2 365 899999999999999999999987643 224445555555544
No 245
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=68.69 E-value=42 Score=34.40 Aligned_cols=143 Identities=14% Similarity=0.108 Sum_probs=81.5
Q ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh-cCCC--HHHHHHHHHHHHHHhcCChh--
Q 015496 176 LSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV-KSSF--VEEAVKALYTVSSLIRNNLA-- 249 (405)
Q Consensus 176 i~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL-~s~~--~~v~~kAl~ALS~lir~~~~-- 249 (405)
.+-+-+-++ ++...-|..|+..|-.++...++.-..++ .+.+..++.-. .+++ ..-+-.|++.++++.--...
T Consensus 212 ~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~-~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~ 290 (370)
T PF08506_consen 212 EEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL-MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTK 290 (370)
T ss_dssp HHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BT
T ss_pred HHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhcccc
Confidence 333334444 34567889999999999976433222221 12333333221 2333 23456789988887654422
Q ss_pred ----------hHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC
Q 015496 250 ----------GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA 319 (405)
Q Consensus 250 ----------~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~ 319 (405)
....|.....++-|. .+.+..+-+|..|++.+..+-.+ .++ +.+ .++++.++.+|.++
T Consensus 291 ~Gvt~~~~~v~v~~Ff~~~v~peL~---~~~~~~piLka~aik~~~~Fr~~----l~~---~~l--~~~~~~l~~~L~~~ 358 (370)
T PF08506_consen 291 SGVTQTNELVDVVDFFSQHVLPELQ---PDVNSHPILKADAIKFLYTFRNQ----LPK---EQL--LQIFPLLVNHLQSS 358 (370)
T ss_dssp TB-S-B-TTS-HHHHHHHHTCHHHH----SS-S-HHHHHHHHHHHHHHGGG----S-H---HHH--HHHHHHHHHHTTSS
T ss_pred CCcccccccccHHHHHHHHhHHHhc---ccCCCCcchHHHHHHHHHHHHhh----CCH---HHH--HHHHHHHHHHhCCC
Confidence 245666655656554 12223456899999999998642 111 122 35899999999999
Q ss_pred ChHHHHHHHHHH
Q 015496 320 DLDLQEKALAAI 331 (405)
Q Consensus 320 D~~v~E~al~aL 331 (405)
+.-|+..|+.++
T Consensus 359 ~~vv~tyAA~~i 370 (370)
T PF08506_consen 359 SYVVHTYAAIAI 370 (370)
T ss_dssp -HHHHHHHHHHH
T ss_pred CcchhhhhhhhC
Confidence 988888888764
No 246
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=68.23 E-value=27 Score=38.88 Aligned_cols=116 Identities=14% Similarity=0.072 Sum_probs=75.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHH
Q 015496 185 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLML 263 (405)
Q Consensus 185 s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~-~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L 263 (405)
..|.+||..|.-+||=++...|+ .+|..+++|..+ ++.||..|..||+=.|.+.. ... .+.+|
T Consensus 566 D~nDDVrRaAVialGFVl~~dp~---------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG-~~e------Ai~lL 629 (929)
T KOG2062|consen 566 DVNDDVRRAAVIALGFVLFRDPE---------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTG-LKE------AINLL 629 (929)
T ss_pred ccchHHHHHHHHHheeeEecChh---------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCC-cHH------HHHHH
Confidence 46788999999999988877663 467888888754 57899999999997776532 222 24555
Q ss_pred HHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHH
Q 015496 264 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQ 324 (405)
Q Consensus 264 ~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~ 324 (405)
-.+.+++ ..-+|.-|+-.+.-+..++ ++...+.+ .++.+.+.+++...+.+..
T Consensus 630 epl~~D~--~~fVRQgAlIa~amIm~Q~----t~~~~pkv--~~frk~l~kvI~dKhEd~~ 682 (929)
T KOG2062|consen 630 EPLTSDP--VDFVRQGALIALAMIMIQQ----TEQLCPKV--NGFRKQLEKVINDKHEDGM 682 (929)
T ss_pred hhhhcCh--HHHHHHHHHHHHHHHHHhc----ccccCchH--HHHHHHHHHHhhhhhhHHH
Confidence 5555554 2336777777776665543 33333332 3566777777766554443
No 247
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=67.64 E-value=34 Score=37.65 Aligned_cols=72 Identities=17% Similarity=0.177 Sum_probs=59.9
Q ss_pred HhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 015496 171 SKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIR 245 (405)
Q Consensus 171 ~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir 245 (405)
..-+.+|.|+++..+++..||.. .|..+-+.-+..++.+++.-.+|.+..-+.+.++.+|++.+-++..++-
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~---LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~ 398 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLL---LLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAP 398 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHH---HHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHh
Confidence 45568999999999999999964 5566666666788888999999999999999999999988888887764
No 248
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=65.05 E-value=22 Score=40.65 Aligned_cols=105 Identities=11% Similarity=0.130 Sum_probs=72.2
Q ss_pred CHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 015496 175 GLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM 253 (405)
Q Consensus 175 gi~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~ 253 (405)
-+|.|++-|. ++...||-+-.-+++.+|..- .++-.-.+|.+-.-|.++++-+|.+++--|++++. ..
T Consensus 969 ~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y-----Tam~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq------~~ 1037 (1529)
T KOG0413|consen 969 LMPMLVKELEYNTAHAIRNNIVLAMGDICSSY-----TAMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQ------FG 1037 (1529)
T ss_pred HHHHHHHHHHhhhHHHHhcceeeeehhhHHHH-----HHHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHh------hh
Confidence 3566666664 456667766666666666431 12223578999999999999999999999999874 34
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (405)
Q Consensus 254 f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~ 290 (405)
|++-+|.-.+.-++..-..+.++++-|-|+++.+...
T Consensus 1038 ~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1038 IVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred hhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence 6777775544444332112567899999999999864
No 249
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=64.59 E-value=59 Score=35.39 Aligned_cols=120 Identities=12% Similarity=0.117 Sum_probs=78.7
Q ss_pred CHHHHHHh-cCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhhHH
Q 015496 175 GLSVLVGQ-LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQE 252 (405)
Q Consensus 175 gi~~Lv~l-L~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~-~~v~~kAl~ALS~lir~~~~~~~ 252 (405)
.+..|+.. .+..+.++|..|.-+||-++-.. .+.++..+++|..+. ..||.....||+=.|.+....
T Consensus 552 vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D---------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-- 620 (926)
T COG5116 552 VVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD---------RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-- 620 (926)
T ss_pred hHhhhheeecccCchHHHHHHHHheeeeEecC---------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH--
Confidence 34444444 34578899999999999888653 477888899997654 678988899999777664321
Q ss_pred HHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC
Q 015496 253 MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS 318 (405)
Q Consensus 253 ~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~ 318 (405)
-.+.+|-.++.+. ..-+|.-|+-+++-+..++ +++..+.+ .++.+.+-.++..
T Consensus 621 -----~a~diL~~L~~D~--~dfVRQ~AmIa~~mIl~Q~----n~~Lnp~v--~~I~k~f~~vI~~ 673 (926)
T COG5116 621 -----VATDILEALMYDT--NDFVRQSAMIAVGMILMQC----NPELNPNV--KRIIKKFNRVIVD 673 (926)
T ss_pred -----HHHHHHHHHhhCc--HHHHHHHHHHHHHHHHhhc----CcccChhH--HHHHHHHHHHHhh
Confidence 1356666777765 3348888888888887653 44433333 2355555555543
No 250
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=64.37 E-value=21 Score=30.26 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=34.7
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc
Q 015496 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 215 (405)
Q Consensus 175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~ 215 (405)
|++.|+..|..++++|...|..+|-.++..+ .+.+.++..
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHHHc
Confidence 6899999999999999999999999999876 666666654
No 251
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=64.18 E-value=94 Score=30.38 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=36.3
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhH-HHHHHcCcHHH
Q 015496 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ-KQVLELGALSK 220 (405)
Q Consensus 175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q-~~vle~G~lp~ 220 (405)
.+|+++.++++.++++|..++.+|..+.++.+... ..+.+.|..+.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v 166 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSV 166 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHH
Confidence 48899999999999999999999999999876555 22445564443
No 252
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=63.96 E-value=1.7e+02 Score=29.69 Aligned_cols=93 Identities=23% Similarity=0.215 Sum_probs=65.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhc-CCCCH-HHHHHHHHHHHHHhcCChHhH
Q 015496 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL-NHPDT-DIRKISAWILGKASQNNPLVQ 209 (405)
Q Consensus 132 lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL-~s~~~-~Ir~~Aa~~Lg~~aqNN~~~Q 209 (405)
-|.-+++.+. ++.+..-|..++-.|..-+-+.+..+.|...|....+++.+ ..++. ..-..++-++..+.+..+ ..
T Consensus 22 ev~ylld~l~-~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~ 99 (361)
T PF07814_consen 22 EVEYLLDGLE-SSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NM 99 (361)
T ss_pred HHHHHHhhcc-cCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-ch
Confidence 3444566666 45566778888888888888899999999999999999998 44444 444455555666666543 33
Q ss_pred HHHHHcCcHHHHHHhhc
Q 015496 210 KQVLELGALSKLMKMVK 226 (405)
Q Consensus 210 ~~vle~G~lp~Ll~LL~ 226 (405)
..+.+.+.+..+++++.
T Consensus 100 ~l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 100 HLLLDRDSLRLLLKLLK 116 (361)
T ss_pred hhhhchhHHHHHHHHhc
Confidence 33445667777788887
No 253
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=63.59 E-value=77 Score=26.57 Aligned_cols=67 Identities=24% Similarity=0.289 Sum_probs=46.9
Q ss_pred CHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh-hcCCCHHH-HHHHHHHHHHHhcCC
Q 015496 175 GLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM-VKSSFVEE-AVKALYTVSSLIRNN 247 (405)
Q Consensus 175 gi~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~L-L~s~~~~v-~~kAl~ALS~lir~~ 247 (405)
.+|.+...|. +..++.|..+-.+++.+++..|-..+ .+..+++- +.+..... ...++-+|..++.+.
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~------~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDE------VLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHH------HHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 3677888887 78899999999999999987664444 33444433 33333222 467899999888665
No 254
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=62.44 E-value=1.7e+02 Score=29.20 Aligned_cols=135 Identities=11% Similarity=0.036 Sum_probs=92.7
Q ss_pred CHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhc-CChhhHHHHHhc-C-cHHHH
Q 015496 187 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIR-NNLAGQEMFYVE-A-GDLML 263 (405)
Q Consensus 187 ~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir-~~~~~~~~f~~~-g-Gi~~L 263 (405)
+...+..+..++-.+.++ + ++.+.+.|++....+...++.-|.+|++ ++......|+.. + ..+.|
T Consensus 39 ~~~~~~~g~~l~~~iL~~----------~--~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l 106 (330)
T PF11707_consen 39 DLSFQSYGLELIRSILQN----------H--LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSL 106 (330)
T ss_pred chhHHHHHHHHHHHHHHH----------H--HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhH
Confidence 444666666665555543 1 6788888988887777789999999999 776666666653 2 34466
Q ss_pred HHhhcCCC----cc-------HHHHHHHHHHHHHHhhchhccCCCCcchhH-HhCCcHHHHHHhccCCChHHHHHHHHHH
Q 015496 264 QDILGNSS----FE-------IRLHRKAVSLVGDLAKCQLENMHKVEPPLF-RDRFFLKSVVDLTASADLDLQEKALAAI 331 (405)
Q Consensus 264 ~~lL~s~~----~~-------~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l-~~~g~l~~Lv~LL~~~D~~v~E~al~aL 331 (405)
..++.... .. ..+|...+.++-.++.. .++..+..+ .+.+++..+.+-|..+++++....+.+|
T Consensus 107 ~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~----~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l 182 (330)
T PF11707_consen 107 PKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSS----GDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETL 182 (330)
T ss_pred HHHhccccccccccccccccCcCHHHHHHHHHHHHHcc----CCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHH
Confidence 66663211 10 15677777777777753 455555544 5568899999999999999999999999
Q ss_pred HH-HhcC
Q 015496 332 KN-LLQL 337 (405)
Q Consensus 332 ~~-L~~~ 337 (405)
.. ++..
T Consensus 183 ~~~Vl~~ 189 (330)
T PF11707_consen 183 KDKVLKD 189 (330)
T ss_pred HHHhccC
Confidence 85 5544
No 255
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=62.41 E-value=2.7e+02 Score=31.34 Aligned_cols=121 Identities=16% Similarity=0.113 Sum_probs=75.0
Q ss_pred HHHHHHHHHcCCCC-HHHHHHHHHHHhhcC-C-CCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHH
Q 015496 115 MEIKELMEKLKTPS-DAQLIQIAIDDLNNS-T-LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIR 191 (405)
Q Consensus 115 ~~L~~a~~~~~~~~-d~~lmk~al~~L~~~-~-~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir 191 (405)
.|+......+...+ ..+++...+..+-.. + .+...|.+.++-|.-++..+--..+-+-.|....+..=|....|.||
T Consensus 64 ~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VR 143 (892)
T KOG2025|consen 64 SFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVR 143 (892)
T ss_pred HHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHH
Confidence 45566666554321 234555444443222 1 23346677888888777654334444445556666666666789999
Q ss_pred HHHHHHHHHHh--cCChHhHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHH
Q 015496 192 KISAWILGKAS--QNNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSS 242 (405)
Q Consensus 192 ~~Aa~~Lg~~a--qNN~~~Q~~vle~G~lp~Ll~LL~s~-~~~v~~kAl~ALS~ 242 (405)
.+|.-+|+..- -++++ ..+...+..+++++ +++||..|+..|+.
T Consensus 144 iqAv~aLsrlQ~d~~dee-------~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 144 IQAVLALSRLQGDPKDEE-------CPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred HHHHHHHHHHhcCCCCCc-------ccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 99999999875 23443 34567788888775 47899887766654
No 256
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=62.16 E-value=54 Score=33.34 Aligned_cols=83 Identities=13% Similarity=0.176 Sum_probs=55.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHH
Q 015496 185 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLML 263 (405)
Q Consensus 185 s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~-~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L 263 (405)
+....+|+.++--|++-+. +|..+..+..+|....+++.+.... ...-.-+..++--++.........+.+.+...++
T Consensus 33 ~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~~~~~~~~ll 111 (361)
T PF07814_consen 33 SSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLLLDRDSLRLL 111 (361)
T ss_pred CCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhhhchhHHHHH
Confidence 4567889999888888887 5889999999999999999995543 3233333333333333334444555555666666
Q ss_pred HHhhc
Q 015496 264 QDILG 268 (405)
Q Consensus 264 ~~lL~ 268 (405)
..++.
T Consensus 112 ~~Ll~ 116 (361)
T PF07814_consen 112 LKLLK 116 (361)
T ss_pred HHHhc
Confidence 77776
No 257
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=61.96 E-value=50 Score=35.99 Aligned_cols=97 Identities=19% Similarity=0.213 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhc-CCH----------HHHHHhc-C---CCCHHHHHHHHHHHHHHhcC--ChHh
Q 015496 146 SLEDSQRALQELLILVEPIDNANDLSKL-GGL----------SVLVGQL-N---HPDTDIRKISAWILGKASQN--NPLV 208 (405)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~~~~~-Ggi----------~~Lv~lL-~---s~~~~Ir~~Aa~~Lg~~aqN--N~~~ 208 (405)
.++-|+.||++|..++|+.+.-.-.+.+ |.+ ...+..+ + -.|.-+|..|..+|+..+-| .+.+
T Consensus 444 ~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~ 523 (898)
T COG5240 444 DPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVS 523 (898)
T ss_pred CchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccccc
Confidence 5688999999999999998765443332 100 0011111 1 14667999999999887764 4444
Q ss_pred HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh
Q 015496 209 QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL 248 (405)
Q Consensus 209 Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~ 248 (405)
++.| ...|-+++.+.++++|..|.+++-++ ++..
T Consensus 524 ~~sv-----~~~lkRclnD~DdeVRdrAsf~l~~~-~~~d 557 (898)
T COG5240 524 PQSV-----ENALKRCLNDQDDEVRDRASFLLRNM-RLSD 557 (898)
T ss_pred HHHH-----HHHHHHHhhcccHHHHHHHHHHHHhh-hhhh
Confidence 5443 45666788888899999999999987 4433
No 258
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=61.85 E-value=1.2e+02 Score=35.35 Aligned_cols=154 Identities=13% Similarity=0.069 Sum_probs=96.4
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhhHH
Q 015496 174 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQE 252 (405)
Q Consensus 174 Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~-~~v~~kAl~ALS~lir~~~~~~~ 252 (405)
+.+..|+.-|++.+..||+.||.-+|.+++.-|. .+-..+|...++++..-+ ++.=-.|+-||+-+++-.----.
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~----~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP----ELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH----HHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 4577778888889999999999999999998882 233346677777666533 34444788888888765432222
Q ss_pred HHHhcCcHHHHHHhhcCC------CccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHH
Q 015496 253 MFYVEAGDLMLQDILGNS------SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEK 326 (405)
Q Consensus 253 ~f~~~gGi~~L~~lL~s~------~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~ 326 (405)
.+. ..++++...|.-+ ..-.-+|--|++++-.+++. .++...+-+.+.=.---|...+-..+..+|..
T Consensus 417 ~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ra----ys~~~l~p~l~~L~s~LL~~AlFDrevncRRA 490 (1133)
T KOG1943|consen 417 LLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARA----YSPSDLKPVLQSLASALLIVALFDREVNCRRA 490 (1133)
T ss_pred HHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhc----CChhhhhHHHHHHHHHHHHHHhcCchhhHhHH
Confidence 222 3566666666421 11234788899999999874 23322222221111111223344567889988
Q ss_pred HHHHHHHHhcC
Q 015496 327 ALAAIKNLLQL 337 (405)
Q Consensus 327 al~aL~~L~~~ 337 (405)
|..|+...+.-
T Consensus 491 AsAAlqE~VGR 501 (1133)
T KOG1943|consen 491 ASAALQENVGR 501 (1133)
T ss_pred HHHHHHHHhcc
Confidence 88888877643
No 259
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=61.79 E-value=12 Score=31.75 Aligned_cols=42 Identities=29% Similarity=0.487 Sum_probs=34.5
Q ss_pred HHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHH
Q 015496 151 QRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRK 192 (405)
Q Consensus 151 ~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~ 192 (405)
-..+..|..|....+.=..|+++|+++.|+.+|.|+|.+|..
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 345666667777788888999999999999999999988754
No 260
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.18 E-value=55 Score=36.65 Aligned_cols=146 Identities=11% Similarity=0.093 Sum_probs=90.3
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHh
Q 015496 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLV 208 (405)
Q Consensus 130 ~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aqNN~~~ 208 (405)
..+|++.-....+ .+.|.|....+.++-|+-..- .-+.+.+.-|-+.|+ .+.-+-+.....+|..++..||..
T Consensus 353 ~rLm~qI~~fv~d--isDeFKivvvdai~sLc~~fp----~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pds 426 (865)
T KOG1078|consen 353 DRLMKQISSFVSD--ISDEFKIVVVDAIRSLCLKFP----RKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDS 426 (865)
T ss_pred HHHHHHHHHHHHh--ccccceEEeHHHHHHHHhhcc----HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcch
Confidence 3455555555444 355777777777776664432 222344555556664 455677778888888888888877
Q ss_pred HHHHHHc-----------CcHHHHHHhhcCC---------------------CHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 015496 209 QKQVLEL-----------GALSKLMKMVKSS---------------------FVEEAVKALYTVSSLIRNNLAGQEMFYV 256 (405)
Q Consensus 209 Q~~vle~-----------G~lp~Ll~LL~s~---------------------~~~v~~kAl~ALS~lir~~~~~~~~f~~ 256 (405)
++..+.+ ..--.++++|..+ +.-+|..|+.|++.+..+++.. .
T Consensus 427 Ke~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l-----~ 501 (865)
T KOG1078|consen 427 KERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVL-----L 501 (865)
T ss_pred hhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc-----c
Confidence 7765543 1112334444321 2234667888888876444432 3
Q ss_pred cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015496 257 EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (405)
Q Consensus 257 ~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~ 288 (405)
......|.+++.+. |..+|.+|.+.+.++-
T Consensus 502 ~sI~vllkRc~~D~--DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 502 PSILVLLKRCLNDS--DDEVRDRATFYLKNLE 531 (865)
T ss_pred ccHHHHHHHHhcCc--hHHHHHHHHHHHHHhh
Confidence 34567888888875 6679999999999986
No 261
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=60.77 E-value=1.2e+02 Score=26.67 Aligned_cols=70 Identities=14% Similarity=0.133 Sum_probs=51.2
Q ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHH-HHHhhcC---CCHHHHHHHHHHHHHHhc
Q 015496 176 LSVLVGQLN-HPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSK-LMKMVKS---SFVEEAVKALYTVSSLIR 245 (405)
Q Consensus 176 i~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aqNN-~~~Q~~vle~G~lp~-Ll~LL~s---~~~~v~~kAl~ALS~lir 245 (405)
+..|-+=|. +.++.++..|..+|-.+++|- +.++..|...+.+.. |++++.. .+..|+.+.+.-|-+-..
T Consensus 40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 334444444 468999999999999999986 477777888899987 9999964 234778777766655443
No 262
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.60 E-value=77 Score=35.58 Aligned_cols=94 Identities=17% Similarity=0.162 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHH---HhcCCHH--------HHHHhc-C---CCCHHHHHHHHHHHHHHhcCChHhHH
Q 015496 146 SLEDSQRALQELLILVEPIDNANDL---SKLGGLS--------VLVGQL-N---HPDTDIRKISAWILGKASQNNPLVQK 210 (405)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~~---~~~Ggi~--------~Lv~lL-~---s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~ 210 (405)
.++.|+.+|.+|.+++|+-..-..- .++=|.+ .-+.+. + =.+..+|..|..+++++.-+++..+.
T Consensus 423 ~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~ 502 (865)
T KOG1078|consen 423 NPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLLP 502 (865)
T ss_pred CcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCccc
Confidence 4588999999999999886543322 1111110 001111 1 14677999999999999977775555
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 015496 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI 244 (405)
Q Consensus 211 ~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~li 244 (405)
- ..-.|.+.+.+.++++|..|-+++.++-
T Consensus 503 s-----I~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 503 S-----ILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred c-----HHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 3 3456667888888899999999999885
No 263
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=60.35 E-value=58 Score=31.86 Aligned_cols=119 Identities=12% Similarity=0.070 Sum_probs=70.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhH-HHHHhcCcHHHHHHhh----c------CCCccHHHHHHHHHHHH
Q 015496 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ-EMFYVEAGDLMLQDIL----G------NSSFEIRLHRKAVSLVG 285 (405)
Q Consensus 217 ~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~-~~f~~~gGi~~L~~lL----~------s~~~~~kl~~kA~~lLs 285 (405)
.+|+++.++++.++++|.+.+..|..++.+.+... ..+...|-.+++.+.+ . .......+...|--++.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 68999999999999999999999999998866554 3356666555554443 2 11135667777888888
Q ss_pred HHhhchhccCCC---CcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015496 286 DLAKCQLENMHK---VEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (405)
Q Consensus 286 ~L~~~~~~~~~~---~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~ 335 (405)
.|+.-....... .....+..+|++..+...-..+.+.++...+..+..+.
T Consensus 200 ~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i 252 (282)
T PF10521_consen 200 SLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPII 252 (282)
T ss_pred HHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHH
Confidence 886421000111 11122233333333322222224666666665555444
No 264
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=59.41 E-value=87 Score=27.48 Aligned_cols=91 Identities=19% Similarity=0.168 Sum_probs=63.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHH-HH
Q 015496 235 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKS-VV 313 (405)
Q Consensus 235 kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~-Lv 313 (405)
..+-.|+-+++..+..-. .++..|.+=|.++ .+..++..|+.++-.++. |....+...+.+..|+.. |+
T Consensus 20 ~~ileicD~In~~~~~~k-----~a~ralkkRl~~~-~n~~v~l~aL~LLe~~vk----NCG~~fh~eiask~Fl~e~L~ 89 (141)
T cd03565 20 GLNMEICDIINETEDGPK-----DAVRALKKRLNGN-KNHKEVMLTLTVLETCVK----NCGHRFHVLVAKKDFIKDVLV 89 (141)
T ss_pred HHHHHHHHHHhCCCCcHH-----HHHHHHHHHHccC-CCHHHHHHHHHHHHHHHH----HccHHHHHHHHHHHhhhHHHH
Confidence 345556666665432211 2455666656543 367788899999998886 466667777888899997 99
Q ss_pred HhccC---CChHHHHHHHHHHHHHh
Q 015496 314 DLTAS---ADLDLQEKALAAIKNLL 335 (405)
Q Consensus 314 ~LL~~---~D~~v~E~al~aL~~L~ 335 (405)
.++.. .+..|+.+++..+...+
T Consensus 90 ~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 90 KLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred HHHcccCCCcHHHHHHHHHHHHHHH
Confidence 99863 24689999998888776
No 265
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=58.96 E-value=60 Score=29.06 Aligned_cols=128 Identities=16% Similarity=0.127 Sum_probs=87.4
Q ss_pred hcCChHhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcC--ChhhHHHHHhcCcHHHHHHhhcCCCccHHHHH
Q 015496 202 SQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRN--NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHR 278 (405)
Q Consensus 202 aqNN~~~Q~~vle~G~lp~Ll~LL~s-~~~~v~~kAl~ALS~lir~--~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~ 278 (405)
=||++..=+.+.|.+.+..++++++. .+..++.+.+..+|-++.| ++.+...+...|-+.-++..=-+-+ +..+..
T Consensus 12 Dq~~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~-~ee~l~ 90 (149)
T PF09758_consen 12 DQNDPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFS-DEEVLS 90 (149)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCC-cchhHH
Confidence 37889999999999999999999988 4468899999999998887 4455555667777776666533322 334666
Q ss_pred HHHHHHHHHhhchhccCCCCcchhHHh-----CCcHHHHHHhccCCChHHHHHHHHHHHHH
Q 015496 279 KAVSLVGDLAKCQLENMHKVEPPLFRD-----RFFLKSVVDLTASADLDLQEKALAAIKNL 334 (405)
Q Consensus 279 kA~~lLs~L~~~~~~~~~~~~~~~l~~-----~g~l~~Lv~LL~~~D~~v~E~al~aL~~L 334 (405)
--+.+|..|+.- .+++....+.. --+...-+++..++|.=+|..+-..+.++
T Consensus 91 yYIsfLK~lSlk----ln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 91 YYISFLKTLSLK----LNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHHHHHhh----cCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 777788887642 34444444432 13444556778888876766555444443
No 266
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=57.08 E-value=50 Score=36.72 Aligned_cols=105 Identities=14% Similarity=0.139 Sum_probs=73.0
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH-HHHHc------CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-
Q 015496 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK-QVLEL------GALSKLMKMVKSSFVEEAVKALYTVSSLIRNN- 247 (405)
Q Consensus 176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~-~vle~------G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~- 247 (405)
...++.+|++.+-.+|+.-..+.||++-.- .++ .++++ ..+..|.+-+.+..+-+|.||+..++.+..-+
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~--~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~s 378 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHF--KKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNS 378 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHH--hcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcc
Confidence 567788999999999999999999998531 111 12221 23444555555666778999999999987543
Q ss_pred --hhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496 248 --LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 248 --~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~ 289 (405)
+..+..| +......+++. ..-+|++|..+++-|..
T Consensus 379 k~~~~r~ev-----~~lv~r~lqDr--ss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 379 KTVGRRHEV-----IRLVGRRLQDR--SSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred cccchHHHH-----HHHHHHHhhhh--hHHHHHHHHHHHHHHHh
Confidence 2233444 45666777775 45589999999999875
No 267
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=56.66 E-value=45 Score=28.18 Aligned_cols=80 Identities=20% Similarity=0.214 Sum_probs=54.9
Q ss_pred HhHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHH
Q 015496 112 KRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLS--LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTD 189 (405)
Q Consensus 112 ~r~~~L~~a~~~~~~~~d~~lmk~al~~L~~~~~t--~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~ 189 (405)
+|+..++++|... -..++.-..+.+...... .+....+++-+..++.-++ ...+...+.++.+.++|. +++
T Consensus 67 ~r~~~l~~~l~~~----~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~-~~~i~~~~~l~~~~~~l~--~~~ 139 (148)
T PF08389_consen 67 ERRRELKDALRSN----SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP-IELIINSNLLNLIFQLLQ--SPE 139 (148)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS--HHHHHSSSHHHHHHHHTT--SCC
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC-HHHhccHHHHHHHHHHcC--CHH
Confidence 5889999888753 234455555555544322 5677889999999988554 445556678888899985 445
Q ss_pred HHHHHHHHH
Q 015496 190 IRKISAWIL 198 (405)
Q Consensus 190 Ir~~Aa~~L 198 (405)
++..|+.||
T Consensus 140 ~~~~A~~cl 148 (148)
T PF08389_consen 140 LREAAAECL 148 (148)
T ss_dssp CHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 588888875
No 268
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=56.64 E-value=73 Score=27.50 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=57.1
Q ss_pred HHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhC-CcHHHHHH
Q 015496 236 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR-FFLKSVVD 314 (405)
Q Consensus 236 Al~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~-g~l~~Lv~ 314 (405)
.+--|+.++++++.....+ .+.|..=|+++ +.-++.|++.+|.+||.. .++.+...+.+. -.|+.+.+
T Consensus 21 ~~~Eia~~t~~s~~~~~ei-----~d~L~kRL~~~--~~hVK~K~Lrilk~l~~~----G~~~f~~~~~~~~~~Ik~~~~ 89 (122)
T cd03572 21 LYEEIAKLTRKSVGSCQEL-----LEYLLKRLKRS--SPHVKLKVLKIIKHLCEK----GNSDFKRELQRNSAQIRECAN 89 (122)
T ss_pred HHHHHHHHHHcCHHHHHHH-----HHHHHHHhcCC--CCcchHHHHHHHHHHHhh----CCHHHHHHHHHhHHHHHHHHH
Confidence 3445677777765544443 46777778775 456788999999999974 455555555544 55666665
Q ss_pred hccCCC--------hHHHHHHHHHHHHHhc
Q 015496 315 LTASAD--------LDLQEKALAAIKNLLQ 336 (405)
Q Consensus 315 LL~~~D--------~~v~E~al~aL~~L~~ 336 (405)
.=..+| ..||+.|-.++..|.+
T Consensus 90 f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 90 YKGPPDPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred cCCCCCcccCcchhHHHHHHHHHHHHHHhc
Confidence 544333 3466766666666543
No 269
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=55.23 E-value=1.2e+02 Score=25.15 Aligned_cols=84 Identities=20% Similarity=0.194 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHH-ccCCCCchhHHH-hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015496 148 EDSQRALQELLI-LVEPIDNANDLS-KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (405)
Q Consensus 148 e~k~~AL~~L~~-Lve~iDnA~~~~-~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL 225 (405)
|-|++|++++.. +.+..=.-.++. ..+.+..|+.-.+.+....+..+...+..++.. |...+.+.+.|+...|-++=
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~-~~a~~~l~~iG~~~fL~klr 80 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKS-PYAAQILRDIGAVRFLSKLR 80 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhC-cHHHHHHHHccHHHHHHHHH
Confidence 557888888875 444444444555 445667777777788888999999999998874 77888888999998866665
Q ss_pred cCCCHHH
Q 015496 226 KSSFVEE 232 (405)
Q Consensus 226 ~s~~~~v 232 (405)
...++..
T Consensus 81 ~~~~~~~ 87 (98)
T PF14726_consen 81 PNVEPNL 87 (98)
T ss_pred hcCCHHH
Confidence 5444443
No 270
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=55.04 E-value=2.3e+02 Score=28.33 Aligned_cols=129 Identities=13% Similarity=0.133 Sum_probs=88.3
Q ss_pred hHHHHHHcCcHHHHHHhhcCC---------------------CH--HHHHHHHHHHHHHhcCChhhH-------------
Q 015496 208 VQKQVLELGALSKLMKMVKSS---------------------FV--EEAVKALYTVSSLIRNNLAGQ------------- 251 (405)
Q Consensus 208 ~Q~~vle~G~lp~Ll~LL~s~---------------------~~--~v~~kAl~ALS~lir~~~~~~------------- 251 (405)
+|+.+.+.|.+|.|-+++++= ++ .++.+-+..+.+++.++....
T Consensus 1 vq~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~ 80 (303)
T PF12463_consen 1 VQTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVES 80 (303)
T ss_pred ChHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccc
Confidence 578889999999998887621 11 256778888888887432211
Q ss_pred ------HHHH--hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCC-CcchhHHhCCcHHHHHHhccCC---
Q 015496 252 ------EMFY--VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK-VEPPLFRDRFFLKSVVDLTASA--- 319 (405)
Q Consensus 252 ------~~f~--~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~-~~~~~l~~~g~l~~Lv~LL~~~--- 319 (405)
.... +.|-+..+++.+.....+.+.|---+.++.++.++ +++ ..+..+.+.|+++.++..+-++
T Consensus 81 ~~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg----~t~~~~Q~fl~~~GLLe~lv~eil~~~~~ 156 (303)
T PF12463_consen 81 ELNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRG----ATSYADQAFLAERGLLEHLVSEILSDGCM 156 (303)
T ss_pred cccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcC----CCcHHHHHHHHhcchHHHHHHHHhcCccc
Confidence 1111 12334555555555445667787888888888875 344 5666788999999999887655
Q ss_pred ChHHHHHHHHHHHHHhcCChh
Q 015496 320 DLDLQEKALAAIKNLLQLRTT 340 (405)
Q Consensus 320 D~~v~E~al~aL~~L~~~~~~ 340 (405)
+..+.+..-..|+.|.....+
T Consensus 157 ~~~v~Q~~FDLLGELiK~n~~ 177 (303)
T PF12463_consen 157 SQEVLQSNFDLLGELIKFNRD 177 (303)
T ss_pred hHHHHHHHHHHHHHHHCCCHH
Confidence 456888888899999987554
No 271
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=54.95 E-value=3.9e+02 Score=30.84 Aligned_cols=190 Identities=13% Similarity=0.069 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHh--cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015496 148 EDSQRALQELLILVEPIDNANDLSK--LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (405)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~~~~--~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL 225 (405)
--|..|+..+...+... .+.. =+.+..|+.+....+.++-..-..+|+.++.=+|+... -.+....|.++.++
T Consensus 506 ~~ki~a~~~~~~~~~~~----vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~a-s~~skI~P~~i~lF 580 (1005)
T KOG2274|consen 506 PVKISAVRAFCGYCKVK----VLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAA-SMESKICPLTINLF 580 (1005)
T ss_pred chhHHHHHHHHhccCce----eccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhh-hhhcchhHHHHHHH
Confidence 34566666666555110 1111 12344555666666788888888999999998887765 35667788888776
Q ss_pred cC--CCHHH---HHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCC--ccHHHHHHHHHHHHHHhhchhccCCCC
Q 015496 226 KS--SFVEE---AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS--FEIRLHRKAVSLVGDLAKCQLENMHKV 298 (405)
Q Consensus 226 ~s--~~~~v---~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~--~~~kl~~kA~~lLs~L~~~~~~~~~~~ 298 (405)
.. +++-+ ..-.+-.|+-...+..+.+..+ +|-|+..|+.+. ....+..-++-.|..+.++ ..+.
T Consensus 581 ~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~-----iPslisil~~~~~~~~~~l~~~aidvLttvvr~----tp~p 651 (1005)
T KOG2274|consen 581 LKYSEDPQVASLAQDLFEELLQIAANYGPMQERL-----IPSLISVLQLNADKAPAGLCAIAIDVLTTVLRN----TPSP 651 (1005)
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHH-----HHHHHHHHcCcccccCchhhHHHHHHHHHHHhc----CCCC
Confidence 43 23322 3345566666655566666665 588888887652 2344556677778878775 2333
Q ss_pred cchhHHhCCcHHHHHHh-ccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCch
Q 015496 299 EPPLFRDRFFLKSVVDL-TASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLD 352 (405)
Q Consensus 299 ~~~~l~~~g~l~~Lv~L-L~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~ 352 (405)
....+. .-+.|.+.++ |.++|......+-.+|.++...+.++......+.|..
T Consensus 652 L~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~ 705 (1005)
T KOG2274|consen 652 LPNLLI-CYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHN 705 (1005)
T ss_pred ccHHHH-HHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCcc
Confidence 333343 3455666665 5667999999999999999987666666666556654
No 272
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=52.97 E-value=1.3e+02 Score=33.74 Aligned_cols=152 Identities=13% Similarity=0.086 Sum_probs=88.6
Q ss_pred HHHcc-CCCCchhHHHhcCCHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCC--hHhHHHHHHcCcHHHHHHhhcCCCH-H
Q 015496 157 LLILV-EPIDNANDLSKLGGLSVLVGQLNH-PDTDIRKISAWILGKASQNN--PLVQKQVLELGALSKLMKMVKSSFV-E 231 (405)
Q Consensus 157 L~~Lv-e~iDnA~~~~~~Ggi~~Lv~lL~s-~~~~Ir~~Aa~~Lg~~aqNN--~~~Q~~vle~G~lp~Ll~LL~s~~~-~ 231 (405)
+.+.. +..++...|.+.||...+..+++. .+.+++..+..++++++--- .+.+..+..... ..+-.++...+. +
T Consensus 495 l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~-~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 495 LWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDF-SVFKVLLNKWDSIE 573 (699)
T ss_pred HHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH-HHHHHHHhhcchhh
Confidence 33433 467889999999999999999974 78999999999999998531 112211111110 111112222221 3
Q ss_pred HHHHHHHHHHHHhcC-----------------------ChhhHHHHHhcCcHHH-HHHhhcCCCccHHHHHHHHHHHHHH
Q 015496 232 EAVKALYTVSSLIRN-----------------------NLAGQEMFYVEAGDLM-LQDILGNSSFEIRLHRKAVSLVGDL 287 (405)
Q Consensus 232 v~~kAl~ALS~lir~-----------------------~~~~~~~f~~~gGi~~-L~~lL~s~~~~~kl~~kA~~lLs~L 287 (405)
....|...|+.++-+ .+.....+....-+.+ +..++.... ....+.=|+|++.++
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~-~~g~~lWal~ti~~~ 652 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSK-SDGSQLWALWTIKNV 652 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccC-CCchHHHHHHHHHHH
Confidence 333444444444433 2222222333333344 555555442 334577899999999
Q ss_pred hhchhccCCCCcchhHHhCCcHHHHHHh
Q 015496 288 AKCQLENMHKVEPPLFRDRFFLKSVVDL 315 (405)
Q Consensus 288 ~~~~~~~~~~~~~~~l~~~g~l~~Lv~L 315 (405)
+.+ +++....+.+.++++.+.++
T Consensus 653 ~~~-----~~~~~~~~~~~~~~~~~~~~ 675 (699)
T KOG3665|consen 653 LEQ-----NKEYCKLVRESNGFELIENI 675 (699)
T ss_pred HHc-----ChhhhhhhHhccchhhhhhc
Confidence 864 45567777778888777665
No 273
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=52.65 E-value=97 Score=34.40 Aligned_cols=57 Identities=14% Similarity=-0.014 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015496 231 EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (405)
Q Consensus 231 ~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~ 288 (405)
..|..++.-||.++|..|+....+.+..-+.-|+.+|..+ .+.-+..-|+.+|.-|.
T Consensus 83 ~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D-~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 83 SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFD-TSITVVSSALLVLIMLL 139 (668)
T ss_pred hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhc-ccHHHHHHHHHHHHHHh
Confidence 4578899999999999999999999999999999999877 36666667777777765
No 274
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=51.42 E-value=76 Score=36.64 Aligned_cols=91 Identities=13% Similarity=0.181 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHh
Q 015496 188 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDI 266 (405)
Q Consensus 188 ~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~-~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~l 266 (405)
+.||..+.-.+|+++=-..+..+ ..+|.|++-|.-. ...+|-..+-|++-+|-++....+.. +|.|...
T Consensus 945 ~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~Y-----iP~I~~~ 1014 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRY-----IPMIAAS 1014 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHh-----hHHHHHH
Confidence 45888888889988855444433 4679999888643 35678888888998888776555544 6889999
Q ss_pred hcCCCccHHHHHHHHHHHHHHhhc
Q 015496 267 LGNSSFEIRLHRKAVSLVGDLAKC 290 (405)
Q Consensus 267 L~s~~~~~kl~~kA~~lLs~L~~~ 290 (405)
|.++ ++-+|+.+.-+|++|.+.
T Consensus 1015 L~Dp--~~iVRrqt~ilL~rLLq~ 1036 (1529)
T KOG0413|consen 1015 LCDP--SVIVRRQTIILLARLLQF 1036 (1529)
T ss_pred hcCc--hHHHHHHHHHHHHHHHhh
Confidence 9987 677999999999999863
No 275
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=51.07 E-value=1.3e+02 Score=33.96 Aligned_cols=113 Identities=12% Similarity=0.030 Sum_probs=73.6
Q ss_pred cCCHHHHHHhcC-C-------CCHHHHHHHHHHHHHHhc--CChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 015496 173 LGGLSVLVGQLN-H-------PDTDIRKISAWILGKASQ--NNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 242 (405)
Q Consensus 173 ~Ggi~~Lv~lL~-s-------~~~~Ir~~Aa~~Lg~~aq--NN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~ 242 (405)
.|.++-++..|. + +++--...|.+.++++.. .-+..-..++++=.++.++.-+++..--.+.+|++-||-
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 456666677773 2 123344566777777665 222333445555566777777777666678999999998
Q ss_pred HhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496 243 LIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (405)
Q Consensus 243 lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~ 290 (405)
+--+.+. .-+-...++....++++. +..++..|+-++.-+..+
T Consensus 487 ~eeDfkd---~~ill~aye~t~ncl~nn--~lpv~ieAalAlq~fi~~ 529 (970)
T COG5656 487 IEEDFKD---NGILLEAYENTHNCLKNN--HLPVMIEAALALQFFIFN 529 (970)
T ss_pred HHHhccc---chHHHHHHHHHHHHHhcC--CcchhhhHHHHHHHHHhc
Confidence 8544443 333345667777888875 455788999999999864
No 276
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=49.46 E-value=2.1e+02 Score=26.13 Aligned_cols=105 Identities=16% Similarity=0.143 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh-
Q 015496 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM- 224 (405)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~L- 224 (405)
+...+..|++-+.-.+.+- .++ ..-.+|.|+.+..++++.+|..|...+..+.+..|..=..=+-. |+..-.++
T Consensus 21 ~~~vr~~Al~~l~~il~qG-Lvn---P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~~-gi~~af~~~ 95 (187)
T PF12830_consen 21 DDSVRLAALQVLELILRQG-LVN---PKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYSE-GIRLAFDYQ 95 (187)
T ss_pred CHHHHHHHHHHHHHHHhcC-CCC---hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHH
Confidence 3566778888777655431 111 22368999999999999999999999999998765433322212 22222222
Q ss_pred --hcCCCH-HH---HHHHHHHHHHHhcCChhhHHHHH
Q 015496 225 --VKSSFV-EE---AVKALYTVSSLIRNNLAGQEMFY 255 (405)
Q Consensus 225 --L~s~~~-~v---~~kAl~ALS~lir~~~~~~~~f~ 255 (405)
+..+.. .. ...-+..+=.+++++...+..|+
T Consensus 96 ~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl 132 (187)
T PF12830_consen 96 RRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFL 132 (187)
T ss_pred HHhcCCccccccccchHHHHHHHHHHhcccHhHHHHH
Confidence 212111 11 22233444456666667777774
No 277
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=49.25 E-value=1.2e+02 Score=31.49 Aligned_cols=93 Identities=15% Similarity=0.141 Sum_probs=62.5
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH-hHHHHHH
Q 015496 136 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPL-VQKQVLE 214 (405)
Q Consensus 136 al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~-~Q~~vle 214 (405)
.++...++..|.|+=.-.|+....+-++.|++.+ ++..+.+=|++.++.|...|..+++.|+.|..+ .+..|-.
T Consensus 12 ~v~KAT~e~nT~enW~~IlDvCD~v~~~~~~~kd-----~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsS 86 (462)
T KOG2199|consen 12 DVEKATDEKNTSENWSLILDVCDKVGSDPDGGKD-----CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSS 86 (462)
T ss_pred HHHHhcCcccccccHHHHHHHHHhhcCCCcccHH-----HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhh
Confidence 3444455544555544555555555566677776 566788889999999999999999999988432 3334445
Q ss_pred cCcHHHHHHhhcC-CCHHHH
Q 015496 215 LGALSKLMKMVKS-SFVEEA 233 (405)
Q Consensus 215 ~G~lp~Ll~LL~s-~~~~v~ 233 (405)
......|..++.+ ....|+
T Consensus 87 r~F~~el~al~~~~~h~kV~ 106 (462)
T KOG2199|consen 87 RDFTTELRALIESKAHPKVC 106 (462)
T ss_pred hhHHHHHHHHHhhcccHHHH
Confidence 5777788888874 444554
No 278
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=47.34 E-value=91 Score=25.77 Aligned_cols=89 Identities=16% Similarity=0.226 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHH
Q 015496 185 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQ 264 (405)
Q Consensus 185 s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~ 264 (405)
.+.+.|+..+.|++.+.- .... .+..+.+-+...++.-+..++|-+-+++++...-...+......+.+.
T Consensus 16 ~S~~~I~~lt~~a~~~~~-----~a~~-----iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~ 85 (114)
T cd03562 16 NSQPSIQTLTKLAIENRK-----HAKE-----IVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFL 85 (114)
T ss_pred ccHHHHHHHHHHHHHHHH-----HHHH-----HHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 367888888888888762 2222 234444555555556678899999999999755555555555577777
Q ss_pred HhhcCCCccHHHHHHHHHHHH
Q 015496 265 DILGNSSFEIRLHRKAVSLVG 285 (405)
Q Consensus 265 ~lL~s~~~~~kl~~kA~~lLs 285 (405)
...... +..+|.+...++.
T Consensus 86 ~~~~~~--~~~~r~kl~rl~~ 104 (114)
T cd03562 86 DAYEKV--DEKTRKKLERLLN 104 (114)
T ss_pred HHHHhC--CHHHHHHHHHHHH
Confidence 777643 6667776655543
No 279
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=47.23 E-value=2.6e+02 Score=31.70 Aligned_cols=138 Identities=16% Similarity=0.148 Sum_probs=86.7
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHH
Q 015496 182 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL 261 (405)
Q Consensus 182 lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~ 261 (405)
.|.+...+||..|+..+..++.-.. +++- -.-.+|.++.+...++--.|...+.+|..++.- .-+.|....-++
T Consensus 526 ~l~d~v~~Ir~~aa~~l~~l~~~~G--~~w~-~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v---~g~ei~~~~Llp 599 (759)
T KOG0211|consen 526 WLPDHVYSIREAAARNLPALVETFG--SEWA-RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEV---LGQEITCEDLLP 599 (759)
T ss_pred hhhhhHHHHHHHHHHHhHHHHHHhC--cchh-HHHhhHHHHHHhcCcccchhhHHHHHHHHHHHH---hccHHHHHHHhH
Confidence 3444567899999988888876433 2211 124578888888776545565556665544321 112233334567
Q ss_pred HHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015496 262 MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (405)
Q Consensus 262 ~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~ 335 (405)
++..+..++ ...+|.+++..+..+... .. ....+.-+.|.+..+....|.+++-.|.-|...+.
T Consensus 600 ~~~~l~~D~--vanVR~nvak~L~~i~~~----L~----~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 600 VFLDLVKDP--VANVRINVAKHLPKILKL----LD----ESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred HHHHhccCC--chhhhhhHHHHHHHHHhh----cc----hHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHH
Confidence 888877776 445788999999988742 11 24555667777777777778888877776666554
No 280
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=47.01 E-value=45 Score=37.77 Aligned_cols=72 Identities=11% Similarity=0.133 Sum_probs=55.0
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh-HhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 015496 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN 247 (405)
Q Consensus 176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~-~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~ 247 (405)
++.++..+.+.++.++......+.-..+.++ .+-..-.-.+.+|.++....+.+.+||..|..+++.+.+.+
T Consensus 373 ~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~ 445 (815)
T KOG1820|consen 373 SEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVH 445 (815)
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHh
Confidence 5666778888999999987777777777655 22222222468888999888888999999999999988865
No 281
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=46.80 E-value=5.1e+02 Score=31.66 Aligned_cols=138 Identities=17% Similarity=0.126 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHhc---CChHhHHHHHHc--CcHHHHHHhhcCC----CHHHHHHHHHHHHHHhcCChhh---------
Q 015496 189 DIRKISAWILGKASQ---NNPLVQKQVLEL--GALSKLMKMVKSS----FVEEAVKALYTVSSLIRNNLAG--------- 250 (405)
Q Consensus 189 ~Ir~~Aa~~Lg~~aq---NN~~~Q~~vle~--G~lp~Ll~LL~s~----~~~v~~kAl~ALS~lir~~~~~--------- 250 (405)
..-..|..|||.++. +|-+.-..++.. +.++.+=+-..+. ....-...++.+|-++|++.-.
T Consensus 1136 a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~ 1215 (1692)
T KOG1020|consen 1136 ATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTF 1215 (1692)
T ss_pred HHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccc
Confidence 344577788888886 555555544432 2333222221111 1133567999999999964221
Q ss_pred --HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChH--HHHH
Q 015496 251 --QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLD--LQEK 326 (405)
Q Consensus 251 --~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~--v~E~ 326 (405)
.-.++..+.+..|..+.+.. +..+|++|+-.++.+|-. +|. .+.+..+.+.+-..|...+.+ .+-.
T Consensus 1216 ~~~~~~~~e~v~~lL~~f~k~~--~~~lR~~al~~Lg~~ci~-----hp~---l~~~~~v~nly~~ila~~n~~~~~ki~ 1285 (1692)
T KOG1020|consen 1216 LQEGETLKEKVLILLMYFSKDK--DGELRRKALINLGFICIQ-----HPS---LFTSREVLNLYDEILADDNSDIKSKIQ 1285 (1692)
T ss_pred hhhhhhHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhh-----Cch---hhhhHHHHHHHHHHHhhhcccHHHHHH
Confidence 11233445556666666654 577999999999999963 222 455666666666777665333 2345
Q ss_pred HHHHHHHHhc
Q 015496 327 ALAAIKNLLQ 336 (405)
Q Consensus 327 al~aL~~L~~ 336 (405)
++..+.-++.
T Consensus 1286 ~l~n~~~yL~ 1295 (1692)
T KOG1020|consen 1286 LLQNLELYLL 1295 (1692)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 282
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=46.37 E-value=70 Score=27.01 Aligned_cols=39 Identities=13% Similarity=0.068 Sum_probs=31.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 015496 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV 256 (405)
Q Consensus 217 ~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~ 256 (405)
+|+.|+.-|.+++.+|...|+-.|-..+-+. ...+.++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHHH
Confidence 5789999999989999999999998888765 55555554
No 283
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.28 E-value=6.4e+02 Score=30.91 Aligned_cols=207 Identities=12% Similarity=0.081 Sum_probs=118.1
Q ss_pred hHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC--CchhHHHhcCCHHHHHHhcCCCCHHH
Q 015496 113 RQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI--DNANDLSKLGGLSVLVGQLNHPDTDI 190 (405)
Q Consensus 113 r~~~L~~a~~~~~~~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i--DnA~~~~~~Ggi~~Lv~lL~s~~~~I 190 (405)
-+++|-.+-..++.|| ++-+-|+..+. .++-..|..|.-=|--+..+- ....-+- ..+|.|.++=..|+..|
T Consensus 941 TYKELc~LASdl~qPd---LVYKFM~LAnh-~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~--kLIPrLyRY~yDP~~~V 1014 (1702)
T KOG0915|consen 941 TYKELCNLASDLGQPD---LVYKFMQLANH-NATWNSKKGAAFGFGAIAKQAGEKLEPYLK--KLIPRLYRYQYDPDKKV 1014 (1702)
T ss_pred HHHHHHHHHhhcCChH---HHHHHHHHhhh-hchhhcccchhhchHHHHHHHHHhhhhHHH--HhhHHHhhhccCCcHHH
Confidence 4677777777777764 55555555443 334333332222122111110 0011111 24788888777899999
Q ss_pred HHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--cCcHHHHHHhhc
Q 015496 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV--EAGDLMLQDILG 268 (405)
Q Consensus 191 r~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~--~gGi~~L~~lL~ 268 (405)
|..-..+=.++.+....+-+..++ ..+.-|+.-+.+..=.+|+.++.||+-++|+.+ .+.|.+ ..-|..+.+.+.
T Consensus 1015 q~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~kewRVReasclAL~dLl~g~~--~~~~~e~lpelw~~~fRvmD 1091 (1702)
T KOG0915|consen 1015 QDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTSKEWRVREASCLALADLLQGRP--FDQVKEKLPELWEAAFRVMD 1091 (1702)
T ss_pred HHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccchhHHHHHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHHHHHH
Confidence 999999999999875555554443 355666666655444789999999999999865 344443 245666777666
Q ss_pred CCCccHHHH---HHHHHHHHHHhhchhccCCCC--------cchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496 269 NSSFEIRLH---RKAVSLVGDLAKCQLENMHKV--------EPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (405)
Q Consensus 269 s~~~~~kl~---~kA~~lLs~L~~~~~~~~~~~--------~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~ 337 (405)
+-+ ..+| .+++..++-||.---.-.++. ..+.+.+.|++ +.-..++..++.++.-|+..
T Consensus 1092 DIK--EsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim--------s~v~evr~~si~tl~dl~Ks 1161 (1702)
T KOG0915|consen 1092 DIK--ESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM--------SKVNEVRRFSIGTLMDLAKS 1161 (1702)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc--------cchHHHHHHHHHHHHHHHHh
Confidence 532 2233 356677777764210000111 11223333322 33457888888888888765
Q ss_pred C
Q 015496 338 R 338 (405)
Q Consensus 338 ~ 338 (405)
+
T Consensus 1162 s 1162 (1702)
T KOG0915|consen 1162 S 1162 (1702)
T ss_pred c
Confidence 4
No 284
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=46.06 E-value=1.7e+02 Score=29.97 Aligned_cols=94 Identities=16% Similarity=0.031 Sum_probs=57.0
Q ss_pred cCCCCHHHHHHHHHHHHHccCCCCc-------------hhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHh
Q 015496 142 NSTLSLEDSQRALQELLILVEPIDN-------------ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLV 208 (405)
Q Consensus 142 ~~~~t~e~k~~AL~~L~~Lve~iDn-------------A~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~ 208 (405)
++..+...|..|+--+.-+...... -.+|...-.+|-|. -=.+..|=+|..|++.+.+...-=|+.
T Consensus 264 ~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~ 342 (370)
T PF08506_consen 264 NPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE 342 (370)
T ss_dssp -TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH
T ss_pred CCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH
Confidence 4555566777787777766655432 12233232333333 111456889999999999988754432
Q ss_pred HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHH
Q 015496 209 QKQVLELGALSKLMKMVKSSFVEEAVKALYTV 240 (405)
Q Consensus 209 Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~AL 240 (405)
+ + .+.+|.++..|.+++.-|+.-|.+||
T Consensus 343 ~--l--~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 343 Q--L--LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp H--H--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred H--H--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 2 2 35899999999998888888777765
No 285
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=45.97 E-value=1.9e+02 Score=34.17 Aligned_cols=110 Identities=14% Similarity=0.064 Sum_probs=73.4
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcC---ChHhHHHHHH---cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 015496 176 LSVLVGQLNHPDTDIRKISAWILGKASQN---NPLVQKQVLE---LGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA 249 (405)
Q Consensus 176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqN---N~~~Q~~vle---~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~ 249 (405)
+..|+.+|++.+-.+|..-..++|+++-. +++ ++...+ .-.+..|.+-+.+-+.-+|.|++.-...|++-+..
T Consensus 314 l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e-~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~ 392 (1251)
T KOG0414|consen 314 LTLLVDLLDSESYTLRNAVLEICANLVASELRDEE-LEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSI 392 (1251)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchh-hhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCC
Confidence 55677888889999999999999998842 222 111111 12566666666677788999999999998876533
Q ss_pred hHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496 250 GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (405)
Q Consensus 250 ~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~ 290 (405)
....+ ...+...+.-+.+. +.-+|++|+.+++.+...
T Consensus 393 p~~~~--~eV~~la~grl~Dk--SslVRk~Ai~Ll~~~L~~ 429 (1251)
T KOG0414|consen 393 PLGSR--TEVLELAIGRLEDK--SSLVRKNAIQLLSSLLDR 429 (1251)
T ss_pred CccHH--HHHHHHHhcccccc--cHHHHHHHHHHHHHHHhc
Confidence 22111 11234444556555 466899999999998753
No 286
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=45.90 E-value=1.4e+02 Score=24.68 Aligned_cols=72 Identities=18% Similarity=0.111 Sum_probs=47.3
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHhcCcHHHHHHh----hcCCCccHHHHHHHHHHHHHHh
Q 015496 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL-AGQEMFYVEAGDLMLQDI----LGNSSFEIRLHRKAVSLVGDLA 288 (405)
Q Consensus 217 ~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~-~~~~~f~~~gGi~~L~~l----L~s~~~~~kl~~kA~~lLs~L~ 288 (405)
++..|.+-|.+.+..+.-+|++.|-.+++|.. .....|....-+.-++.+ ......+..+|.++..++...+
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 45667777777788889999999999999964 445555554433333332 1111236778999988877643
No 287
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=45.88 E-value=2.2e+02 Score=29.88 Aligned_cols=81 Identities=19% Similarity=0.151 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCH-------H-HHHHHHHHHHHHhcCChhhH-HHHHh
Q 015496 186 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV-------E-EAVKALYTVSSLIRNNLAGQ-EMFYV 256 (405)
Q Consensus 186 ~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~-------~-v~~kAl~ALS~lir~~~~~~-~~f~~ 256 (405)
++-.+-..|..||.|++-+.+.+|+.+++......+++.+...-. + .-.+.++-|+.+= +..+ +.++.
T Consensus 109 ~d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale---~~~Rsql~~~ 185 (532)
T KOG4464|consen 109 ADMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALE---TDHRSQLIAE 185 (532)
T ss_pred cchHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhh---HHHHHHHHHH
Confidence 345788899999999999999999999999888888877654311 1 1245666666552 2333 44567
Q ss_pred cCcHHHHHHhhcC
Q 015496 257 EAGDLMLQDILGN 269 (405)
Q Consensus 257 ~gGi~~L~~lL~s 269 (405)
.+|++.+...+.+
T Consensus 186 l~Gl~~lt~~led 198 (532)
T KOG4464|consen 186 LLGLELLTNWLED 198 (532)
T ss_pred hcccHHHHHHhhc
Confidence 8999999999865
No 288
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=44.76 E-value=3.2e+02 Score=27.36 Aligned_cols=103 Identities=17% Similarity=0.092 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHHHHhcCChHhHHHHHHc------------CcHHHHHHhhcCC-----CHHHHHHHHHHHHHHhcCCh
Q 015496 186 PDTDIRKISAWILGKASQNNPLVQKQVLEL------------GALSKLMKMVKSS-----FVEEAVKALYTVSSLIRNNL 248 (405)
Q Consensus 186 ~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~------------G~lp~Ll~LL~s~-----~~~v~~kAl~ALS~lir~~~ 248 (405)
.++---+.|+.++..+..+|+.+++.+++- ..|+.+..+|... ++.++..-+.-|+.-+-+++
T Consensus 109 ~dpy~~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p 188 (312)
T PF04869_consen 109 LDPYRCWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECP 188 (312)
T ss_dssp S-HHHHHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-H
T ss_pred CCHHHHHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCH
Confidence 345455789999999999999999988753 1466677766542 24456667778888889999
Q ss_pred hhHHHHHhcC-cHHHHHHhhc-CCCccHHHHHHHHHHHHHHh
Q 015496 249 AGQEMFYVEA-GDLMLQDILG-NSSFEIRLHRKAVSLVGDLA 288 (405)
Q Consensus 249 ~~~~~f~~~g-Gi~~L~~lL~-s~~~~~kl~~kA~~lLs~L~ 288 (405)
.+...|+..+ .++.|+.... ++..++-+|-=++++|.-..
T Consensus 189 ~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicy 230 (312)
T PF04869_consen 189 DAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICY 230 (312)
T ss_dssp HHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHH
Confidence 9999999875 7899999753 33456767776777776543
No 289
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=44.19 E-value=28 Score=21.65 Aligned_cols=28 Identities=25% Similarity=0.440 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcC
Q 015496 189 DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS 227 (405)
Q Consensus 189 ~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s 227 (405)
.+|..|+++||++. +| .+++.|++.+++
T Consensus 2 ~vR~~aa~aLg~~~--~~---------~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLG--DE---------EAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcC--CH---------hHHHHHHHHhcC
Confidence 58999999999984 33 245666666654
No 290
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=44.06 E-value=87 Score=33.39 Aligned_cols=82 Identities=16% Similarity=0.128 Sum_probs=60.8
Q ss_pred hhHHHhcCCHHHHH-H---hcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 015496 167 ANDLSKLGGLSVLV-G---QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 242 (405)
Q Consensus 167 A~~~~~~Ggi~~Lv-~---lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~ 242 (405)
-..++-.||||.+- . --.+.+.++|..|-.+||.+++..|..= .-+.+.+..|.+-|..+.++++...--|||+
T Consensus 363 l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~--~~d~~li~~LF~sL~~~~~evr~sIqeALss 440 (501)
T PF13001_consen 363 LRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLF--SKDLSLIEFLFDSLEDESPEVRVSIQEALSS 440 (501)
T ss_pred HHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccc--cccHHHHHHHHHHhhCcchHHHHHHHHHHHH
Confidence 34455578888771 0 1234689999999999999999988642 1245788888888877778899888888888
Q ss_pred HhcCChhh
Q 015496 243 LIRNNLAG 250 (405)
Q Consensus 243 lir~~~~~ 250 (405)
++.++...
T Consensus 441 l~~af~~~ 448 (501)
T PF13001_consen 441 LAPAFKDL 448 (501)
T ss_pred HHHHHhcc
Confidence 88776543
No 291
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=44.01 E-value=3e+02 Score=30.60 Aligned_cols=58 Identities=16% Similarity=0.156 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChHHHHHHHHHHHHHhcC
Q 015496 275 RLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQL 337 (405)
Q Consensus 275 kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~-D~~v~E~al~aL~~L~~~ 337 (405)
..|..++.+++++++. .|...-.|.+..+++.|.++|..+ ++.+...|+.+|..|+-.
T Consensus 83 ~~Rl~~L~Ll~~~v~~-----qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 83 SYRLQALTLLGHFVRS-----QPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred hhHHHHHHHHHHHHhc-----CCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence 3577999999999974 466777888999999999999877 888889999999888854
No 292
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.83 E-value=24 Score=36.13 Aligned_cols=61 Identities=21% Similarity=0.145 Sum_probs=47.9
Q ss_pred HHHHccC-CCCchhHHHhcCCHHHHHHhcC--CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcC
Q 015496 156 ELLILVE-PIDNANDLSKLGGLSVLVGQLN--HPDTDIRKISAWILGKASQNNPLVQKQVLELG 216 (405)
Q Consensus 156 ~L~~Lve-~iDnA~~~~~~Ggi~~Lv~lL~--s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G 216 (405)
-+..+|. ..++-+.+..+||++.++.-.+ ..+|=||+...-|+..+.|||.+.|+.+-+..
T Consensus 379 ~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~kme 442 (478)
T KOG2676|consen 379 FIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGKME 442 (478)
T ss_pred HHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhcCC
Confidence 4445553 3456666777899999987554 56899999999999999999999999886653
No 293
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=42.75 E-value=1.1e+02 Score=30.63 Aligned_cols=75 Identities=17% Similarity=0.190 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHccCCCCchhHHHhcC--CHHHHHHhcCCC---CHHHHHHHHHHHHHHhcCChHhHHHHHH------cCc
Q 015496 149 DSQRALQELLILVEPIDNANDLSKLG--GLSVLVGQLNHP---DTDIRKISAWILGKASQNNPLVQKQVLE------LGA 217 (405)
Q Consensus 149 ~k~~AL~~L~~Lve~iDnA~~~~~~G--gi~~Lv~lL~s~---~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle------~G~ 217 (405)
.|+.|+-.+.+...+-+....|...+ .+.-|++++..+ ...+|..|..+|..+++..+...+.+-. +|.
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGi 317 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGI 317 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCccc
Confidence 45667777766665556677777777 888999999743 5889999999999999988877775433 366
Q ss_pred HHHHHH
Q 015496 218 LSKLMK 223 (405)
Q Consensus 218 lp~Ll~ 223 (405)
++.+++
T Consensus 318 L~~llR 323 (329)
T PF06012_consen 318 LPQLLR 323 (329)
T ss_pred HHHHHH
Confidence 776665
No 294
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=42.74 E-value=3.8e+02 Score=28.30 Aligned_cols=79 Identities=10% Similarity=0.059 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcC------CCccHHHHHHHHHHHHHHhhchhccCCCCcchhH-
Q 015496 231 EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN------SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLF- 303 (405)
Q Consensus 231 ~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s------~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l- 303 (405)
.+...|+-+|+|++-+++.+++.|++..-...+.+.+.. +++..-+-.+-+|+++.|- .+.+..+
T Consensus 112 ~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale--------~~~Rsql~ 183 (532)
T KOG4464|consen 112 HVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALE--------TDHRSQLI 183 (532)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhh--------HHHHHHHH
Confidence 567889999999999999999999988766655555421 1122233445667776652 2333333
Q ss_pred HhCCcHHHHHHhcc
Q 015496 304 RDRFFLKSVVDLTA 317 (405)
Q Consensus 304 ~~~g~l~~Lv~LL~ 317 (405)
.+.+.++.+-+.|.
T Consensus 184 ~~l~Gl~~lt~~le 197 (532)
T KOG4464|consen 184 AELLGLELLTNWLE 197 (532)
T ss_pred HHhcccHHHHHHhh
Confidence 44566666666654
No 295
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=41.43 E-value=2.9e+02 Score=27.99 Aligned_cols=137 Identities=15% Similarity=0.079 Sum_probs=85.8
Q ss_pred HhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhHHHHHHc-CcHHHHHHh-hc---CC--C---HHHHHHHHHH
Q 015496 171 SKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLEL-GALSKLMKM-VK---SS--F---VEEAVKALYT 239 (405)
Q Consensus 171 ~~~Ggi~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~-G~lp~Ll~L-L~---s~--~---~~v~~kAl~A 239 (405)
.+...++.|..+-. ...+.+|..+...+.++.+. .++.++.+ ....++.+| ++ .. . +..-..-++.
T Consensus 6 l~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~---~~~plL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~lL~~ 82 (353)
T PF10257_consen 6 LQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQ---SQQPLLPHRSVHRPLQRLLLRSCGESRSASPTEKELVELLNT 82 (353)
T ss_pred HHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHh---cccccccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHHHHH
Confidence 34456777777665 46799999999999999975 33334443 555667676 43 21 1 2224578999
Q ss_pred HHHHhcCChhhHHHHHhcCc--------------------------HHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhc
Q 015496 240 VSSLIRNNLAGQEMFYVEAG--------------------------DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE 293 (405)
Q Consensus 240 LS~lir~~~~~~~~f~~~gG--------------------------i~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~ 293 (405)
|+.-+|.+|.....|...+. +..|+..+.+.. ++-.+|.-.+-.++.-.
T Consensus 83 lc~~i~~~P~ll~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~eg---~ig~~Are~LLll~~l~-- 157 (353)
T PF10257_consen 83 LCSKIRKDPSLLNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSEG---RIGDFAREGLLLLMSLA-- 157 (353)
T ss_pred HHHHHHhCHHHHHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcCc---HHHHHHHHHHHHHHhCC--
Confidence 99999999998998886543 356677777652 34445555555544311
Q ss_pred cCCCCcchhHHh-CCcHHHHHHh
Q 015496 294 NMHKVEPPLFRD-RFFLKSVVDL 315 (405)
Q Consensus 294 ~~~~~~~~~l~~-~g~l~~Lv~L 315 (405)
..++.....+++ ..+++.++.-
T Consensus 158 ~~~~~~~~~i~~~S~fc~~latg 180 (353)
T PF10257_consen 158 SEDPALAQYIVEHSDFCPVLATG 180 (353)
T ss_pred CCCcHHHHHHHHcchhHHHHHHH
Confidence 124445556666 4666655543
No 296
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=40.51 E-value=12 Score=23.15 Aligned_cols=26 Identities=27% Similarity=0.580 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc
Q 015496 190 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK 226 (405)
Q Consensus 190 Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~ 226 (405)
||..|+++||.+.. + -++|.|++.|+
T Consensus 1 VR~~Aa~aLg~igd--~---------~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD--P---------RAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S--H---------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC--H---------HHHHHHHHHhc
Confidence 68899999998764 2 35677776653
No 297
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=40.09 E-value=3.6e+02 Score=26.19 Aligned_cols=96 Identities=10% Similarity=0.065 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC--hhhHHHHH--hcCcH
Q 015496 185 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN--LAGQEMFY--VEAGD 260 (405)
Q Consensus 185 s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~--~~~~~~f~--~~gGi 260 (405)
.++...-..|..+|+.. -+.-++|+|+++++.+++.+- .+.++. ......+. -.|-+
T Consensus 53 ~~~~~~~~~a~~LLaq~-----------re~~A~~~li~l~~~~~~~~~--------~l~GD~~tE~l~~ilasv~~G~~ 113 (249)
T PF06685_consen 53 DEEYNLHFYALYLLAQF-----------REERALPPLIRLFSQDDDFLE--------DLFGDFITEDLPRILASVGDGDI 113 (249)
T ss_pred CcchHHHHHHHHHHHHH-----------hhhhhHHHHHHHHcCCcchHH--------HHHcchhHhHHHHHHHHHhCCCH
Confidence 33444556777777653 345789999999986654211 011110 01111111 13457
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHH
Q 015496 261 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (405)
Q Consensus 261 ~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~ 304 (405)
+.|..++.+++.+.-+|..|+.++..++.. ++..++.++
T Consensus 114 ~~L~~li~~~~~~~yvR~aa~~aL~~l~~~-----~~~~Re~vi 152 (249)
T PF06685_consen 114 EPLKELIEDPDADEYVRMAAISALAFLVHE-----GPISREEVI 152 (249)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHc-----CCCCHHHHH
Confidence 788888888877888999999999999864 454455544
No 298
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=39.88 E-value=1.7e+02 Score=28.80 Aligned_cols=90 Identities=12% Similarity=0.112 Sum_probs=51.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCC
Q 015496 218 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 297 (405)
Q Consensus 218 lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~ 297 (405)
|..|++=+..++.-.|..+.|.+|.+- ++. .++.|.+.|.+.+..+-+|..|+.+|..++.
T Consensus 189 I~al~~~l~~~SalfrhEvAfVfGQl~--s~~---------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-------- 249 (289)
T KOG0567|consen 189 INALIDGLADDSALFRHEVAFVFGQLQ--SPA---------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD-------- 249 (289)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhhcc--chh---------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--------
Confidence 333444444444444555556555552 222 3566666666554556677778877777763
Q ss_pred CcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHH
Q 015496 298 VEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334 (405)
Q Consensus 298 ~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L 334 (405)
...++.|.+.+..++.-+++-+..+|.-+
T Consensus 250 --------e~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 250 --------EDCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred --------HHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 23566667777766666666666555543
No 299
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=39.36 E-value=1.6e+02 Score=24.89 Aligned_cols=94 Identities=21% Similarity=0.127 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhh-cCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhC-CcH
Q 015496 232 EAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL-GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR-FFL 309 (405)
Q Consensus 232 v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL-~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~-g~l 309 (405)
.-.+.+..|+....+... ... .+..|..-| .++..+.+..-||+.+|.+|+.+ +++.....+.+. ..+
T Consensus 19 p~~~~l~eIa~~t~~~~~-~~~-----I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~n----G~~~~~~~~~~~~~~I 88 (125)
T PF01417_consen 19 PPGKLLAEIAQLTYNSKD-CQE-----IMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKN----GSERFVDELRDHIDII 88 (125)
T ss_dssp --HHHHHHHHHHTTSCHH-HHH-----HHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHH----S-HHHHHHHHHTHHHH
T ss_pred cCHHHHHHHHHHHhcccc-HHH-----HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHH----CCHHHHHHHHHHHHHH
Confidence 355677888888876633 222 356777777 44445788999999999999985 566666666544 444
Q ss_pred HHHHHh--ccC-C-C--hHHHHHHHHHHHHHh
Q 015496 310 KSVVDL--TAS-A-D--LDLQEKALAAIKNLL 335 (405)
Q Consensus 310 ~~Lv~L--L~~-~-D--~~v~E~al~aL~~L~ 335 (405)
..+.++ ... + | ..||++|-..+.-|.
T Consensus 89 ~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~ 120 (125)
T PF01417_consen 89 RELQDFQYVDPKGKDQGQNVREKAKEILELLN 120 (125)
T ss_dssp HGGGG---BBTTSTBHHHHHHHHHHHHHHHHT
T ss_pred hhcceeeccCCCCccHHHHHHHHHHHHHHHhC
Confidence 444333 111 1 1 247777766555443
No 300
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=38.81 E-value=58 Score=32.11 Aligned_cols=61 Identities=18% Similarity=0.077 Sum_probs=42.1
Q ss_pred hhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh-------HhH-------HHHHHcCcHHHHHHhhcC
Q 015496 167 ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP-------LVQ-------KQVLELGALSKLMKMVKS 227 (405)
Q Consensus 167 A~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~-------~~Q-------~~vle~G~lp~Ll~LL~s 227 (405)
+....+..-+..++..|.+++...|..|+.+|.-++||.- .+. ..+.+.|+++.|+.+|+.
T Consensus 53 ~~~~~~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 53 LSFDQRKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred cchhhHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3344444556677777788888888999999999988732 111 223456899999888864
No 301
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=38.80 E-value=3.2e+02 Score=25.17 Aligned_cols=88 Identities=18% Similarity=0.087 Sum_probs=50.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHH--HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh-cCChhhHHH
Q 015496 177 SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVL--ELGALSKLMKMVKSSFVEEAVKALYTVSSLI-RNNLAGQEM 253 (405)
Q Consensus 177 ~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vl--e~G~lp~Ll~LL~s~~~~v~~kAl~ALS~li-r~~~~~~~~ 253 (405)
|.|+.||...+ ++.....+|+.+++. +...++ ..|+.+-|.+.+-+.+...-.+|++--.++. .-+......
T Consensus 6 plLIsCL~~q~--~k~s~~KiL~~iVs~---Va~~v~~~~~~~W~eL~d~Ils~~~~e~~kA~~IF~~L~~~l~~efl~~ 80 (174)
T PF04510_consen 6 PLLISCLTMQE--TKESDFKILRRIVSH---VAYEVFDLQEGGWDELSDCILSLSENEPVKAFHIFICLPMPLYGEFLIP 80 (174)
T ss_pred HHHHHHHHhhc--ccHhHHHHHHHHHHH---HHHHHHhcCCCCchhHHHHHHHhhccchHHHHHHHHhCCchhhhhHHHH
Confidence 56678997432 223333455555532 222343 5688888888877644444577888888775 334444444
Q ss_pred HHhcCcHHHHHHhhcCC
Q 015496 254 FYVEAGDLMLQDILGNS 270 (405)
Q Consensus 254 f~~~gGi~~L~~lL~s~ 270 (405)
|++. -++.+.+.|.++
T Consensus 81 ~~~~-L~~~~~~~L~~p 96 (174)
T PF04510_consen 81 FMEN-LLPEISKVLLPP 96 (174)
T ss_pred HHHH-HHHHHHHHcCCc
Confidence 5443 555556666655
No 302
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=36.92 E-value=1.9e+02 Score=23.42 Aligned_cols=52 Identities=19% Similarity=0.264 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHHHhcC----ChHhHHHHHHcCcHHHHHHhhcCCC--HHHHHHHHHHHHHH
Q 015496 187 DTDIRKISAWILGKASQN----NPLVQKQVLELGALSKLMKMVKSSF--VEEAVKALYTVSSL 243 (405)
Q Consensus 187 ~~~Ir~~Aa~~Lg~~aqN----N~~~Q~~vle~G~lp~Ll~LL~s~~--~~v~~kAl~ALS~l 243 (405)
+-.+|..||.+|+.++.+ ++..|.. .+..|.+.+.+++ ....--|+..|+.+
T Consensus 19 h~~LRd~AA~lL~~I~~~~~~~~~~L~~R-----i~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 19 HWALRDFAASLLAQICRKFSSSYPTLQPR-----ITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred hHHHHHHHHHHHHHHHHHhccccchHHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 568999999999999975 3334443 4567777777554 35677888888887
No 303
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.58 E-value=1.5e+02 Score=36.74 Aligned_cols=111 Identities=11% Similarity=0.035 Sum_probs=76.8
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhhHHH
Q 015496 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEM 253 (405)
Q Consensus 175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~-~~v~~kAl~ALS~lir~~~~~~~~ 253 (405)
.+..+++.|.++++.+|+.++.+++-++|-- ++...=++....+++-+.+.. +-.|.--..|++++-|+.......
T Consensus 877 ~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v---~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~ 953 (2067)
T KOG1822|consen 877 ALTLIVNSLINPNPKLRCAAAEALARLAQVV---GSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG 953 (2067)
T ss_pred HHHHHhhhhccCChHHHHHHHHHHHHHHHhc---cccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence 4566677788899999999999999999842 222222344566666666644 445778888999998875433222
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 254 f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~ 289 (405)
=.-..++..|..+..++ .++.+|+-++.++..++.
T Consensus 954 qhl~t~v~illal~~Ds-~~p~VqtwSL~al~~i~~ 988 (2067)
T KOG1822|consen 954 QHLNTSVSILLALATDS-TSPVVQTWSLHALALILD 988 (2067)
T ss_pred hhcccHHHHHHHHhhcC-CCchhhhhHHHHHHHHHc
Confidence 22345788888887776 466788888888887764
No 304
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=36.21 E-value=6.5e+02 Score=28.09 Aligned_cols=164 Identities=13% Similarity=0.088 Sum_probs=85.8
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCChHhHHHHH---HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC
Q 015496 182 QLNHPDTDIRKISAWILGKASQNNPLVQKQVL---ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 258 (405)
Q Consensus 182 lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vl---e~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~g 258 (405)
.+.+-++++++.|.-+|.-++.+.+-.-.-+. ....+..++..+. .++..+.-++..|+|+..| +..++.|...
T Consensus 552 ~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~- 628 (745)
T KOG0301|consen 552 ILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR- 628 (745)
T ss_pred HHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH-
Confidence 33445788999999999988887543332222 1245666666665 3345567789999999876 7777777654
Q ss_pred cHHHHHHhh---cCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhc----cC-CChHHHHHHHHH
Q 015496 259 GDLMLQDIL---GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT----AS-ADLDLQEKALAA 330 (405)
Q Consensus 259 Gi~~L~~lL---~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL----~~-~D~~v~E~al~a 330 (405)
...+...+ ++. .+..+++-.+.+.-|+.--.. ...+ +.+.++.+...+ .. +|.+..-..+.|
T Consensus 629 -~~~i~~~~~~~~s~-~~knl~ia~atlaln~sv~l~--~~~~------~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~A 698 (745)
T KOG0301|consen 629 -LESILDPVIEASSL-SNKNLQIALATLALNYSVLLI--QDNE------QLEGKEVLLSAISTLLEPVDDLEAIYRLLVA 698 (745)
T ss_pred -HHHHhhhhhhhhcc-cchhHHHHHHHHHHHHHHHHH--hccc------ccchHHHHHHHHHhhcccchhHHHHHHHHHH
Confidence 22222222 121 123344444444444432110 0111 123333333332 22 244333466778
Q ss_pred HHHHhcCChhhHHHHHhcCCchHHHHHHH
Q 015496 331 IKNLLQLRTTEALVLKDFCGLDTALERLR 359 (405)
Q Consensus 331 L~~L~~~~~~~~~~v~~~~Gl~~~L~~L~ 359 (405)
|.+|...+...++.- +.-++.....+++
T Consensus 699 lgtL~t~~~~~~~~A-~~~~v~sia~~~~ 726 (745)
T KOG0301|consen 699 LGTLMTVDASVIQLA-KNRSVDSIAKKLK 726 (745)
T ss_pred HHhhccccHHHHHHH-HhcCHHHHHHHHH
Confidence 888887654333333 3556544444443
No 305
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=36.12 E-value=2.4e+02 Score=23.68 Aligned_cols=69 Identities=13% Similarity=0.226 Sum_probs=48.0
Q ss_pred HHHHHHHhhcCC--CCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCC
Q 015496 133 IQIAIDDLNNST--LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKASQNN 205 (405)
Q Consensus 133 mk~al~~L~~~~--~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s--~~~~Ir~~Aa~~Lg~~aqNN 205 (405)
|..--+++++.. .+..+|..++..+++++.-.. ..+ ....|.+..+|++ ..+++|..|..+-....+.=
T Consensus 13 l~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g--~~i--~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 13 LAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMG--KHI--SSALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 444445566654 577899999999999987321 121 2356777788875 67889999988888777653
No 306
>PRK14707 hypothetical protein; Provisional
Probab=36.01 E-value=1.1e+03 Score=30.47 Aligned_cols=138 Identities=10% Similarity=0.039 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc
Q 015496 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK 226 (405)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL-~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~ 226 (405)
..+..|..--..+..+.+..+.|... ++.-.++-| +-++...-..|+.+|+..-...|..+..+--.+.-..|-.|-+
T Consensus 810 ~Cr~AA~~LA~rLa~dp~Lr~af~AQ-~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e~~LR~aL~~QevantLNALSK 888 (2710)
T PRK14707 810 ACAAAASALAARVADDPRLREAFDVQ-HVATVLNAMSKWPDNAVCAAAAGAMAERLADEPELRHTLTAHGVVIVLNALSK 888 (2710)
T ss_pred HHHHHHHHHHHHHhcChhHHHhcCHH-HHHHHHHHhccCCCchHHHHHHHHHHHHHhcChhhhhccchHHHHHHHhhhcc
Confidence 34444333333344444555554443 466666655 4688888889999999888888877665532222223333333
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhc-CCCccHHHHHHHHHHHHHHh
Q 015496 227 SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG-NSSFEIRLHRKAVSLVGDLA 288 (405)
Q Consensus 227 s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~-s~~~~~kl~~kA~~lLs~L~ 288 (405)
=++.....+|.-+|..-+.+.+..++.|- .-|+.-.++.|+ -+ .....+.-+..+..-|.
T Consensus 889 WPd~~~C~~AA~aLA~rL~~d~~Lrqal~-aQ~VAN~LNALSKWP-d~~~Cr~Aa~aLA~rLa 949 (2710)
T PRK14707 889 WPNVPVCAAAASALAERLADEPELRKALS-AHRVATALNALSKWP-DIPVCATAASALAERLS 949 (2710)
T ss_pred CCCcHHHHHHHHHHHHHHhcCHHHHhhcc-HHHHHHHHhhhccCC-CchHHHHHHHHHHHHhc
Confidence 35556677888889888888887777764 344555555554 33 23333444444444444
No 307
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=35.67 E-value=90 Score=37.17 Aligned_cols=147 Identities=15% Similarity=0.163 Sum_probs=91.3
Q ss_pred cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHH-cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhH
Q 015496 173 LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLE-LGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ 251 (405)
Q Consensus 173 ~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle-~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~ 251 (405)
.|.+|.|-.-|.+++...|..|..++|-+.+.+. .|-. -. -.....++.-+...+.++|.+++-.++.++-++|...
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~-~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~ 335 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKD-SQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIA 335 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcch-hhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhh
Confidence 4677888777888999999999999999998632 3322 11 1344455566666678899999999998888877654
Q ss_pred HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHH
Q 015496 252 EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAI 331 (405)
Q Consensus 252 ~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL 331 (405)
.... -...|.. .+...++++++.++........ ..-.++.. +++.+.+-+......||..|...|
T Consensus 336 ~~~~---~~~~l~~--~~~D~~~rir~~v~i~~~~v~~---------~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~L 400 (1266)
T KOG1525|consen 336 KAST---ILLALRE--RDLDEDVRVRTQVVIVACDVMK---------FKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGL 400 (1266)
T ss_pred hHHH---HHHHHHh--hcCChhhhheeeEEEEEeehhH---------hhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4331 1122221 2211233333333222222211 11112223 677777778888899999999999
Q ss_pred HHHhc
Q 015496 332 KNLLQ 336 (405)
Q Consensus 332 ~~L~~ 336 (405)
..+..
T Consensus 401 aqlYk 405 (1266)
T KOG1525|consen 401 AQLYK 405 (1266)
T ss_pred HHHHH
Confidence 88876
No 308
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=35.50 E-value=7.2e+02 Score=28.33 Aligned_cols=89 Identities=9% Similarity=0.096 Sum_probs=63.9
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 015496 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (405)
Q Consensus 175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f 254 (405)
.++.++..++++.-=+|.+||..++++. .+.....+-..+......++.+.+-+++..|.-||..+++|. .....
T Consensus 461 iv~hv~P~f~s~ygfL~Srace~is~~e---eDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~-q~h~k- 535 (970)
T COG5656 461 IVNHVIPAFRSNYGFLKSRACEFISTIE---EDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE-QSHEK- 535 (970)
T ss_pred HHHHhhHhhcCcccchHHHHHHHHHHHH---HhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch-hhhHH-
Confidence 5667777888888889999999999994 334444444456677778888866789999999999999986 33333
Q ss_pred HhcCcHHHHHHhhc
Q 015496 255 YVEAGDLMLQDILG 268 (405)
Q Consensus 255 ~~~gGi~~L~~lL~ 268 (405)
..+...+...++|+
T Consensus 536 ~sahVp~tmekLLs 549 (970)
T COG5656 536 FSAHVPETMEKLLS 549 (970)
T ss_pred HHhhhhHHHHHHHH
Confidence 34455555555554
No 309
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.46 E-value=1.8e+02 Score=30.98 Aligned_cols=66 Identities=18% Similarity=0.192 Sum_probs=51.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh-HhHHHHHHcCcHHHHHHhhcCC-C-HHHHHHHHHHHH
Q 015496 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVKSS-F-VEEAVKALYTVS 241 (405)
Q Consensus 176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~-~~Q~~vle~G~lp~Ll~LL~s~-~-~~v~~kAl~ALS 241 (405)
+..|-+-|.+.++.++..|..+|-+|+.|-- .+...|.+.+.++.++++.+.. . ..||.|++-.|=
T Consensus 40 vralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~ 108 (470)
T KOG1087|consen 40 VRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELID 108 (470)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHH
Confidence 3345566677788999999999999999843 4455788889999999999876 3 478988887664
No 310
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=34.81 E-value=3.3e+02 Score=28.99 Aligned_cols=160 Identities=14% Similarity=0.067 Sum_probs=92.2
Q ss_pred HHHHcCC-CCHHHHHHHHHHHhh--c--C-----CCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCC--C
Q 015496 120 LMEKLKT-PSDAQLIQIAIDDLN--N--S-----TLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP--D 187 (405)
Q Consensus 120 a~~~~~~-~~d~~lmk~al~~L~--~--~-----~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~--~ 187 (405)
.++.+.. -+|.+++...+..+. . + ..+..-|...|.-|. ...--++.+- ..+..+...|.++ +
T Consensus 260 ~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~---kS~~Aa~~~~--~~~~i~~~~l~~~~~~ 334 (501)
T PF13001_consen 260 LLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLS---KSVIAATSFP--NILQIVFDGLYSDNTN 334 (501)
T ss_pred HHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHH---HhHHHHhCCc--cHHHHHhccccCCccc
Confidence 4444443 367888888888877 2 1 123445555544444 3333232221 2344455566665 7
Q ss_pred HHHHHHHHHHH---HHHhcCChHhHHHHH----HcCcHHHHHHh-----hcCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 015496 188 TDIRKISAWIL---GKASQNNPLVQKQVL----ELGALSKLMKM-----VKSSFVEEAVKALYTVSSLIRNNLAGQEMFY 255 (405)
Q Consensus 188 ~~Ir~~Aa~~L---g~~aqNN~~~Q~~vl----e~G~lp~Ll~L-----L~s~~~~v~~kAl~ALS~lir~~~~~~~~f~ 255 (405)
..+|..+..-+ .....+-+..+-.-+ ..|+.|.+ +. ..+++...|..+--+||.+++..|.... -
T Consensus 335 ~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~-~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~--~ 411 (501)
T PF13001_consen 335 SKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLI-QDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFS--K 411 (501)
T ss_pred cccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCcccc-ccccccCCCcccHHHHHHHHHHHHHHHccCccccc--c
Confidence 78888887777 665555443333333 33454444 11 0122356799999999999999876421 1
Q ss_pred hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496 256 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 256 ~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~ 289 (405)
+.+-+..|..-|..+ +..++..+--+|+.|+.
T Consensus 412 d~~li~~LF~sL~~~--~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 412 DLSLIEFLFDSLEDE--SPEVRVSIQEALSSLAP 443 (501)
T ss_pred cHHHHHHHHHHhhCc--chHHHHHHHHHHHHHHH
Confidence 244566666667544 45567777888888874
No 311
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=34.80 E-value=1.6e+02 Score=27.10 Aligned_cols=118 Identities=15% Similarity=0.178 Sum_probs=48.7
Q ss_pred hHhHHHHHHcCcHHHHHHhhcCCC------------------HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHh-
Q 015496 206 PLVQKQVLELGALSKLMKMVKSSF------------------VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDI- 266 (405)
Q Consensus 206 ~~~Q~~vle~G~lp~Ll~LL~s~~------------------~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~l- 266 (405)
..-|+.+.+.|++..++.+++.+- ..+-..+..-|..++++|+.++..+.++=. .+...
T Consensus 33 ~~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~~~--~l~~~~ 110 (207)
T PF01365_consen 33 RERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKHLD--FLISIF 110 (207)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-------H
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHh--HHHHHH
Confidence 467888888999999999886421 123456778888999999999999887522 22222
Q ss_pred hcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015496 267 LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336 (405)
Q Consensus 267 L~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~ 336 (405)
+... ...-.-+.-++..+.. .+++....+.+.. +..++++|.... -+..-+..|..|..
T Consensus 111 ~~~~---~~~~~~~~d~l~~i~~-----dN~~L~~~i~e~~-I~~~i~ll~~~g--r~~~~L~~L~~lc~ 169 (207)
T PF01365_consen 111 MQLQ---IGYGLGALDVLTEIFR-----DNPELCESISEEH-IEKFIELLRKHG--RQPRYLDFLSSLCV 169 (207)
T ss_dssp HCCC---H-TTHHHHHHHHHHHT-----T-----------------------------------------
T ss_pred HHhh---ccCCchHHHHHHHHHH-----CcHHHHHHhhHHH-HHHHHHHHHHcC--CChHHHHHHhhhcc
Confidence 2221 1111235666777764 3555666665444 888888887622 22234445555544
No 312
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=33.89 E-value=4.5e+02 Score=25.51 Aligned_cols=72 Identities=15% Similarity=0.181 Sum_probs=50.1
Q ss_pred cCCHHHHHHhcCCCCHH--------HHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCH--HHHHHHHHHHHH
Q 015496 173 LGGLSVLVGQLNHPDTD--------IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV--EEAVKALYTVSS 242 (405)
Q Consensus 173 ~Ggi~~Lv~lL~s~~~~--------Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~--~v~~kAl~ALS~ 242 (405)
--.+++++++++.++.. +=..-..+++++++ |-++.|-+++.++.. =+|..|+.||..
T Consensus 72 ~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~------------G~~~~L~~li~~~~~~~yvR~aa~~aL~~ 139 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGD------------GDIEPLKELIEDPDADEYVRMAAISALAF 139 (249)
T ss_pred hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhC------------CCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 45799999999765532 22223334444443 556777788877764 368899999999
Q ss_pred HhcCChhhHHHHHh
Q 015496 243 LIRNNLAGQEMFYV 256 (405)
Q Consensus 243 lir~~~~~~~~f~~ 256 (405)
++..++..++.+++
T Consensus 140 l~~~~~~~Re~vi~ 153 (249)
T PF06685_consen 140 LVHEGPISREEVIQ 153 (249)
T ss_pred HHHcCCCCHHHHHH
Confidence 99999888887764
No 313
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=33.80 E-value=91 Score=28.77 Aligned_cols=69 Identities=16% Similarity=0.125 Sum_probs=52.2
Q ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHH----hhcCCCHHHHHHHHHHHHHHhcCCh
Q 015496 177 SVLVGQLNH-PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK----MVKSSFVEEAVKALYTVSSLIRNNL 248 (405)
Q Consensus 177 ~~Lv~lL~s-~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~----LL~s~~~~v~~kAl~ALS~lir~~~ 248 (405)
..|+..|.+ .+..+..+...+++.++||.|+.+- +.|.++.++. ++.+.+.+++..++.++++++.-.+
T Consensus 104 ~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 104 RGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence 445566654 5788889999999999999998775 4577776664 5556667889999999998876544
No 314
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=33.68 E-value=3.4e+02 Score=23.98 Aligned_cols=87 Identities=21% Similarity=0.149 Sum_probs=59.2
Q ss_pred HHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHH-HHcC-cHHHHHH-hhcCCC--HHHHHHHHHHHHHH
Q 015496 169 DLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV-LELG-ALSKLMK-MVKSSF--VEEAVKALYTVSSL 243 (405)
Q Consensus 169 ~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~v-le~G-~lp~Ll~-LL~s~~--~~v~~kAl~ALS~l 243 (405)
.+++....+.+++.+.++++.+-..++.++.++... .+..+ .+.+ .++.++. ++.++. ...|.-++-++..+
T Consensus 68 ~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~---~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l 144 (168)
T PF12783_consen 68 NLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSR---FRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILREL 144 (168)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Confidence 455566778888888777799999999999999964 22221 1222 3445554 666554 35677899999999
Q ss_pred hcCChhhHHHHHhcC
Q 015496 244 IRNNLAGQEMFYVEA 258 (405)
Q Consensus 244 ir~~~~~~~~f~~~g 258 (405)
+++..-..+.|.+++
T Consensus 145 ~~~p~~l~~lf~NYD 159 (168)
T PF12783_consen 145 CKDPQFLVDLFVNYD 159 (168)
T ss_pred HhChhHHHHHHHHcC
Confidence 987665666666543
No 315
>PLN03205 ATR interacting protein; Provisional
Probab=32.97 E-value=3.8e+02 Score=28.22 Aligned_cols=162 Identities=12% Similarity=0.104 Sum_probs=94.2
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhc---CChHhHHHHHHcCcHHH---HHHhhc-CCCHHHHHHHHHHHHHHhcC-
Q 015496 175 GLSVLVGQLNHPDTDIRKISAWILGKASQ---NNPLVQKQVLELGALSK---LMKMVK-SSFVEEAVKALYTVSSLIRN- 246 (405)
Q Consensus 175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aq---NN~~~Q~~vle~G~lp~---Ll~LL~-s~~~~v~~kAl~ALS~lir~- 246 (405)
.+++|+++..-++..+.-.+.++|-.+-| ||.+--++-.+.+.+.. ..+..- +..+.++..|+.-.--|++.
T Consensus 324 LlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmss 403 (652)
T PLN03205 324 LVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMST 403 (652)
T ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhcc
Confidence 35677777777788888888887776665 34432233333344332 223322 22344565565544434333
Q ss_pred C-hhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhch----------hc-----cCCC-----CcchhHHh
Q 015496 247 N-LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ----------LE-----NMHK-----VEPPLFRD 305 (405)
Q Consensus 247 ~-~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~----------~~-----~~~~-----~~~~~l~~ 305 (405)
+ ...++.|...-.++-+.++|+.. .-..+|+.|+.++.-|.... .+ ..+. ...+.|.
T Consensus 404 na~~eREkFG~~~VfESiaQLLkkE-aGl~VqKealhLLfLLLNCpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~fS- 481 (652)
T PLN03205 404 DAYTARESFVSKEVFESISLLLRKE-GGLHVRKEAIHLFYLLLNCPKLYDRFDSLHEEKNSSDTENDSEGNFFALEAFG- 481 (652)
T ss_pred chhHHHHHhcchHHHHHHHHHHHHh-ccchhhHHHHHHHHHHHcCcHHHHHHhcCCccccccccccccccccccHHHHH-
Confidence 2 33477787777888888999865 35678999988887664321 00 0011 1111111
Q ss_pred CCcHHHHHHhccC-----CChHHHHHHHHHHHHHhcCCh
Q 015496 306 RFFLKSVVDLTAS-----ADLDLQEKALAAIKNLLQLRT 339 (405)
Q Consensus 306 ~g~l~~Lv~LL~~-----~D~~v~E~al~aL~~L~~~~~ 339 (405)
.++..|.+++.. .|.+++..+...|..+++.++
T Consensus 482 -sIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk 519 (652)
T PLN03205 482 -KIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGN 519 (652)
T ss_pred -HHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCC
Confidence 245556677654 378888899988888887654
No 316
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=30.54 E-value=5.8e+02 Score=25.80 Aligned_cols=150 Identities=14% Similarity=0.119 Sum_probs=92.3
Q ss_pred HHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhhHHHHHh-cCcHHHHHHh-hcCCC--c-cHHHHHHHHH
Q 015496 209 QKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYV-EAGDLMLQDI-LGNSS--F-EIRLHRKAVS 282 (405)
Q Consensus 209 Q~~vle~G~lp~Ll~LL~s~~-~~v~~kAl~ALS~lir~~~~~~~~f~~-~gGi~~L~~l-L~s~~--~-~~kl~~kA~~ 282 (405)
-+.+++++.+..|.++-..+. +.++..++..++.++..... .|+. .....++.++ ++... . ...+...-+.
T Consensus 2 lEyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~---plL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~ 78 (353)
T PF10257_consen 2 LEYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQ---PLLPHRSVHRPLQRLLLRSCGESRSASPTEKELVE 78 (353)
T ss_pred hHHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhccc---ccccchhhhhhHHHHHHHHhCCCCCCchHHHHHHH
Confidence 356788899999999998765 57899999999999876332 2433 3456677777 54321 1 3346677778
Q ss_pred HHHHHhhchhccCCCCcchhHH--------------------------hCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015496 283 LVGDLAKCQLENMHKVEPPLFR--------------------------DRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336 (405)
Q Consensus 283 lLs~L~~~~~~~~~~~~~~~l~--------------------------~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~ 336 (405)
++..+|..- ..+|.....|. +-.+...|+..+.++ -.+-+.|..+|-.+++
T Consensus 79 lL~~lc~~i--~~~P~ll~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~e-g~ig~~Are~LLll~~ 155 (353)
T PF10257_consen 79 LLNTLCSKI--RKDPSLLNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSE-GRIGDFAREGLLLLMS 155 (353)
T ss_pred HHHHHHHHH--HhCHHHHHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcC-cHHHHHHHHHHHHHHh
Confidence 888888631 11222222221 124567788888777 4677778888877776
Q ss_pred CC--hh-hHHHHHhcCCchHHHH-HHHHHHHH
Q 015496 337 LR--TT-EALVLKDFCGLDTALE-RLRQQLQE 364 (405)
Q Consensus 337 ~~--~~-~~~~v~~~~Gl~~~L~-~L~~~~~~ 364 (405)
.+ +. ..+-+.+...+.+.+. .|-..|..
T Consensus 156 l~~~~~~~~~~i~~~S~fc~~latgL~alYs~ 187 (353)
T PF10257_consen 156 LASEDPALAQYIVEHSDFCPVLATGLGALYSQ 187 (353)
T ss_pred CCCCCcHHHHHHHHcchhHHHHHHHHHHHHHh
Confidence 65 22 2344554466655433 33344433
No 317
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=30.02 E-value=7.5e+02 Score=26.92 Aligned_cols=128 Identities=21% Similarity=0.215 Sum_probs=71.1
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCC----------------CHH---HHHHHHHHHHHccCC-CCchhHHHh-
Q 015496 114 QMEIKELMEKLKTPSDAQLIQIAIDDLNNSTL----------------SLE---DSQRALQELLILVEP-IDNANDLSK- 172 (405)
Q Consensus 114 ~~~L~~a~~~~~~~~d~~lmk~al~~L~~~~~----------------t~e---~k~~AL~~L~~Lve~-iDnA~~~~~- 172 (405)
+-+.++..+.+.+ ++..++++|+..|.+..- +.. .-+.-|-.|..++.. .+|-+-|..
T Consensus 206 QlYy~~It~a~~g-~~~~~r~eAL~sL~TDsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lep 284 (576)
T KOG2549|consen 206 QLYYKEITEACTG-SDEPLRQEALQSLETDSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEP 284 (576)
T ss_pred HHHHHHHHHHHhc-CCHHHHHHHHHhhccCccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhh
Confidence 3444566555555 778889999999987540 101 111222223322222 244333322
Q ss_pred --cCCHHHHHHhcCC----------CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC--HHHHHHHHH
Q 015496 173 --LGGLSVLVGQLNH----------PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF--VEEAVKALY 238 (405)
Q Consensus 173 --~Ggi~~Lv~lL~s----------~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~--~~v~~kAl~ 238 (405)
.-.+|.++.|+=+ ..-.+|--||..++.++.+-...-+. ++--.+..|.+.+.+.. .....-|+.
T Consensus 285 Ylh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~YGai~ 363 (576)
T KOG2549|consen 285 YLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHYGAIA 363 (576)
T ss_pred HHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhhhHHH
Confidence 2357777776632 12348999999999998876554444 44556666776665542 234445555
Q ss_pred HHHHH
Q 015496 239 TVSSL 243 (405)
Q Consensus 239 ALS~l 243 (405)
.|+.+
T Consensus 364 gL~~l 368 (576)
T KOG2549|consen 364 GLSEL 368 (576)
T ss_pred HHHHh
Confidence 55544
No 318
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=29.79 E-value=4.4e+02 Score=26.59 Aligned_cols=62 Identities=6% Similarity=-0.009 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC----------CHHHHHHHHHHHHHHhcCChh
Q 015496 187 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS----------FVEEAVKALYTVSSLIRNNLA 249 (405)
Q Consensus 187 ~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~----------~~~v~~kAl~ALS~lir~~~~ 249 (405)
+-.+-.....++..+.+| |...-...=+-.+|.++.++-+. +-.+|..|...|+.+++.+..
T Consensus 230 nl~~L~~lm~~v~ALl~N-~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~ 301 (343)
T cd08050 230 NLALLIYLMRMVRALLDN-PNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFST 301 (343)
T ss_pred cHHHHHHHHHHHHHHhcC-CCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCC
Confidence 455556666677777765 44444444445888888776322 124677888888888876544
No 319
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=29.66 E-value=7.5e+02 Score=26.77 Aligned_cols=139 Identities=14% Similarity=0.078 Sum_probs=76.7
Q ss_pred CCCHHHHHHhHHHHHHHHHHcC-C-CCHHHHHHHHHH-HhhcCC-CCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHH
Q 015496 104 RLSPSELKKRQMEIKELMEKLK-T-PSDAQLIQIAID-DLNNST-LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVL 179 (405)
Q Consensus 104 ~~s~e~l~~r~~~L~~a~~~~~-~-~~d~~lmk~al~-~L~~~~-~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~L 179 (405)
..+.+++ +.++++|+++.. | ...++.++..+. .....+ .+..+...-|.+|...|..+|+. . .+.+..+
T Consensus 6 ~~s~~~~---~~~V~~AL~~~~~Gd~~~Y~~L~~~l~~~~~~~d~~~~~~l~~~L~~L~~~Vs~Ld~~--~--~~LV~ai 78 (563)
T PF05327_consen 6 EFSDEMY---KSFVRSALESHEKGDSSQYDELVEQLSDPSESKDAISVSQLIRWLKALSSCVSLLDSS--C--KQLVEAI 78 (563)
T ss_dssp ---HHHH---HHHHHHHHHHHHTT--HHHHHHHHHHHS-TT-TTS--HHHHHHHHHHHHHGGGGG-SC--C--HHHHHHH
T ss_pred hhCHHHH---HHHHHHHHHHHhcCCHHHHHHHHHHHcccccCcccccHHHHHHHHHHHHHHHHHhhhH--H--HHHHHHH
Confidence 3444443 568889998873 3 223444444442 112222 24567788899999999888763 1 2235566
Q ss_pred HHhcC-CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHH--------------HHHHHHHHHHHHh
Q 015496 180 VGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVE--------------EAVKALYTVSSLI 244 (405)
Q Consensus 180 v~lL~-s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~--------------v~~kAl~ALS~li 244 (405)
+++-- .-+++++..-...|++++..++..-..++ ..|++.+..+... +....-.+|..|+
T Consensus 79 l~~~W~~~~~~~v~~y~~Fl~~Lvsa~~~yl~~vl-----~~LV~~f~p~~~~~~~~~~~~~~~~~~~~~~vH~~L~~Il 153 (563)
T PF05327_consen 79 LSLNWLGRDEDFVEAYIQFLINLVSAQPKYLSPVL-----SMLVKNFIPPPSSIAEWPGCPPEKRREIYERVHDALQKIL 153 (563)
T ss_dssp HT-TGGGS-HHHHHHHHHHHHHHHHH-GGGHHHHH-----HHHHHGGGS-HHHHHH---------------HHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHH-----HHHHHhccCCCccccccchhhhhhhhhhHHHHHHHHHHHH
Confidence 66532 35778888888889999887777666554 4555555443211 2245777777777
Q ss_pred cCChhhHHHH
Q 015496 245 RNNLAGQEMF 254 (405)
Q Consensus 245 r~~~~~~~~f 254 (405)
+-.|.+...+
T Consensus 154 ~lvP~s~~~L 163 (563)
T PF05327_consen 154 RLVPTSPSFL 163 (563)
T ss_dssp HH-GGGHHHH
T ss_pred HHcCCCHHHH
Confidence 7777655444
No 320
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=29.46 E-value=3.3e+02 Score=22.55 Aligned_cols=65 Identities=15% Similarity=0.155 Sum_probs=45.1
Q ss_pred HHHhhc--CCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCC
Q 015496 137 IDDLNN--STLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKASQNN 205 (405)
Q Consensus 137 l~~L~~--~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s--~~~~Ir~~Aa~~Lg~~aqNN 205 (405)
-+.+.+ ...+..+|..++..++++++-.. ..+. ...|.+..+|++ ..+++|..|+.+-....++=
T Consensus 17 ~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~--~~i~--~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 17 SDVLNDLRGKKPIPEKKRALRSIEELIKLGG--SHIS--SARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHhccccCCCHHHHHHHHHHHHHHHHHhH--HHHH--HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 344444 44578899999999999987321 1221 246777778864 56789999998888887753
No 321
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=29.40 E-value=6.3e+02 Score=31.67 Aligned_cols=130 Identities=12% Similarity=0.089 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhc----CCCCHHHHHHHHHHHHHHhcC--------ChHhHHHHHHc
Q 015496 149 DSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQL----NHPDTDIRKISAWILGKASQN--------NPLVQKQVLEL 215 (405)
Q Consensus 149 ~k~~AL~~L~~Lve-~iDnA~~~~~~Ggi~~Lv~lL----~s~~~~Ir~~Aa~~Lg~~aqN--------N~~~Q~~vle~ 215 (405)
.+.-.|+.|-++.. |++ .-.++-...|..+-..+ .+++..++..|...|..++.- |-..|+.+
T Consensus 1108 pr~FsLqKLveIa~~Nm~-Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkef--- 1183 (1780)
T PLN03076 1108 PRVFSLTKIVEIAHYNMN-RIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEF--- 1183 (1780)
T ss_pred CchhHHHHHHHHHHhccc-chheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHH---
Confidence 35666776666553 343 22333345566665543 245788999999888887752 33455554
Q ss_pred CcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCC--CccHHHHHHHHHHHHHHhh
Q 015496 216 GALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS--SFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 216 G~lp~Ll~LL~-s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~--~~~~kl~~kA~~lLs~L~~ 289 (405)
+.+|..++. +.+.+++...+.++..|+...... +. .||..+..++... .....+-+.|.-.+..++.
T Consensus 1184 --LkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~n---Ik--SGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~ 1253 (1780)
T PLN03076 1184 --MKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNN---VK--SGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIR 1253 (1780)
T ss_pred --HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhh---hh--cCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 466666554 445789999999999998754432 22 3999999998731 1244566666666666654
No 322
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=29.13 E-value=84 Score=26.60 Aligned_cols=39 Identities=13% Similarity=0.042 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccH
Q 015496 235 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEI 274 (405)
Q Consensus 235 kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~ 274 (405)
..+-.++.+. .+|.....|++.|+++.|+.+|..++.|+
T Consensus 65 ~~Ik~l~~La-~~P~LYp~lv~l~~v~sL~~LL~HeN~DI 103 (108)
T PF08216_consen 65 EEIKKLSVLA-TAPELYPELVELGAVPSLLGLLSHENTDI 103 (108)
T ss_pred HHHHHHHHcc-CChhHHHHHHHcCCHHHHHHHHCCCCcce
Confidence 3555666554 46888999999999999999998876664
No 323
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=28.85 E-value=7.5e+02 Score=26.49 Aligned_cols=143 Identities=11% Similarity=0.070 Sum_probs=74.5
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhc--CCHHHHHHhcCCCCH-HHHHHHHHHHHHHhcCChHh
Q 015496 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL--GGLSVLVGQLNHPDT-DIRKISAWILGKASQNNPLV 208 (405)
Q Consensus 132 lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~--Ggi~~Lv~lL~s~~~-~Ir~~Aa~~Lg~~aqNN~~~ 208 (405)
++--.+++|.+.. +.-.|..||..|+.++.+= +..|.+. =.+..++..-...++ -++..+=-|+.++++..|..
T Consensus 330 iL~~l~EvL~d~~-~~~~k~laLrvL~~ml~~Q--~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~ 406 (516)
T KOG2956|consen 330 ILLLLLEVLSDSE-DEIIKKLALRVLREMLTNQ--PARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ 406 (516)
T ss_pred HHHHHHHHHccch-hhHHHHHHHHHHHHHHHhc--hHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh
Confidence 3444556665532 4456778888888877541 1122211 134445555444444 44444445667777776644
Q ss_pred HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--cCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 015496 209 QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV--EAGDLMLQDILGNSSFEIRLHRKAVSLVGD 286 (405)
Q Consensus 209 Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~--~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~ 286 (405)
.-. .+..++-+.+.+....++-.+--++..-+ ++.+.. ....|.+++...+. +..+|+-|+|+|.+
T Consensus 407 ~I~--------~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~--~EeL~~ll~diaP~~iqay~S~--SS~VRKtaVfCLVa 474 (516)
T KOG2956|consen 407 CIV--------NISPLILTADEPRAVAVIKMLTKLFERLS--AEELLNLLPDIAPCVIQAYDST--SSTVRKTAVFCLVA 474 (516)
T ss_pred HHH--------HHhhHHhcCcchHHHHHHHHHHHHHhhcC--HHHHHHhhhhhhhHHHHHhcCc--hHHhhhhHHHhHHH
Confidence 332 22333333333333333333333333211 222221 34567777777775 55689999999999
Q ss_pred Hhh
Q 015496 287 LAK 289 (405)
Q Consensus 287 L~~ 289 (405)
+..
T Consensus 475 mv~ 477 (516)
T KOG2956|consen 475 MVN 477 (516)
T ss_pred HHH
Confidence 874
No 324
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=27.87 E-value=4.9e+02 Score=24.08 Aligned_cols=78 Identities=12% Similarity=0.073 Sum_probs=55.7
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHH--cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHH
Q 015496 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLE--LGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE 252 (405)
Q Consensus 175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle--~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~ 252 (405)
-+|.+++-|.......++.|...+..+.+. ...+.++- -..+++|-.-|.+.++++...++.+|..++..++..-+
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~--~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLER--GGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHh--cchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 367777888888888888888888887765 12222332 24566666778888899999999999999877665444
Q ss_pred HH
Q 015496 253 MF 254 (405)
Q Consensus 253 ~f 254 (405)
++
T Consensus 117 aL 118 (183)
T PF10274_consen 117 AL 118 (183)
T ss_pred HH
Confidence 44
No 325
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=26.89 E-value=3.1e+02 Score=31.37 Aligned_cols=103 Identities=18% Similarity=0.136 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCC-CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH
Q 015496 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPL 207 (405)
Q Consensus 129 d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~-iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~ 207 (405)
+++.+.+.++.|.++.. .++...++-|.+-|.. .|.|- -+|.+-+..++.-=.+...--+..|...||++--+-
T Consensus 23 ~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~pgvd~aa-~vka~fl~~i~~~~~~~~~i~~~~a~~~l~~m~gg~-- 97 (844)
T TIGR00117 23 NANQMAALVELLKNPPA--GEEEFLLDLLTNRVPPGVDEAA-YVKAGFLAAIAKGEAKCPLISPEKAIELLGTMQGGY-- 97 (844)
T ss_pred CHHHHHHHHHHhcCCCC--ccHHHHHHHHHhCCCCCCChHH-HHHHHHHHHHHcCCCCCcccCHHHHHHHHhhccCCC--
Confidence 45666666777766532 2233345555554433 34333 233333333332111112222556777777765431
Q ss_pred hHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 015496 208 VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIR 245 (405)
Q Consensus 208 ~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir 245 (405)
-+++|+.+|.+++.++...|.-+|++.+-
T Consensus 98 ---------~~~~l~~~~~~~~~~~a~~a~~~l~~~~~ 126 (844)
T TIGR00117 98 ---------NVHPLIDALDSQDANIAPIAAKALSHTLL 126 (844)
T ss_pred ---------CHHHHHHHHhCCCHHHHHHHHHHHhceEE
Confidence 25777788877666777777777776543
No 326
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=26.68 E-value=4.4e+02 Score=23.18 Aligned_cols=77 Identities=16% Similarity=0.065 Sum_probs=48.6
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHH-hhcCCCccHHHHHHHHHHHHHHhh
Q 015496 212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQD-ILGNSSFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 212 vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~-lL~s~~~~~kl~~kA~~lLs~L~~ 289 (405)
+++....+.|++.+.+++..+-..++..+..+.+.+....+.=++ =-+..+.. ++.+++.+..-|.-++-.+..+|.
T Consensus 69 ~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele-~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 69 LLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELE-VFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 456678889999988877777777888888877654332211111 01233333 566554345567778888999885
No 327
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=26.63 E-value=6.7e+02 Score=25.26 Aligned_cols=130 Identities=16% Similarity=0.119 Sum_probs=70.0
Q ss_pred CCCHHHHHHhHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCC----------------------CHHHHHHHHHHHHHcc
Q 015496 104 RLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTL----------------------SLEDSQRALQELLILV 161 (405)
Q Consensus 104 ~~s~e~l~~r~~~L~~a~~~~~~~~d~~lmk~al~~L~~~~~----------------------t~e~k~~AL~~L~~Lv 161 (405)
.+|.| -+.+.++..+.+.+ ++....+.+++.|.+..- +.......+.-+.-|+
T Consensus 171 ~LS~E----lq~yf~~It~a~~~-~~~~~r~~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl 245 (343)
T cd08050 171 VLSKE----LQLYFEEITEALVG-SNEEKRREALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALL 245 (343)
T ss_pred ccCHH----HHHHHHHHHHHHhC-CCHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHh
Confidence 45665 34555666655544 445667778888776431 0111122233333344
Q ss_pred CCCCchhHHHhcCCHHHHHHhcCC----CC------HHHHHHHHHHHHHHhcC----ChHhHHHHHHcCcHHHHHHhhcC
Q 015496 162 EPIDNANDLSKLGGLSVLVGQLNH----PD------TDIRKISAWILGKASQN----NPLVQKQVLELGALSKLMKMVKS 227 (405)
Q Consensus 162 e~iDnA~~~~~~Ggi~~Lv~lL~s----~~------~~Ir~~Aa~~Lg~~aqN----N~~~Q~~vle~G~lp~Ll~LL~s 227 (405)
.|..---+..=.-.+|+++.||-+ .. -.+|..||.+|+.++.. ++..+..+ +..|.+.+.+
T Consensus 246 ~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri-----~~tl~k~l~d 320 (343)
T cd08050 246 DNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRI-----TRTLLKALLD 320 (343)
T ss_pred cCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHH-----HHHHHHHHcC
Confidence 443222222223368999988732 22 47999999999999854 22333333 3356655554
Q ss_pred CC-H-HHHHHHHHHHHHH
Q 015496 228 SF-V-EEAVKALYTVSSL 243 (405)
Q Consensus 228 ~~-~-~v~~kAl~ALS~l 243 (405)
+. + ...--|+..|+.+
T Consensus 321 ~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 321 PKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred CCCCcchhhHHHHHHHHh
Confidence 43 2 3355666666655
No 328
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.46 E-value=1.8e+02 Score=30.92 Aligned_cols=71 Identities=14% Similarity=0.067 Sum_probs=48.6
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHH-HHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015496 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE-MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 287 (405)
Q Consensus 217 ~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~-~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L 287 (405)
++..|-+-+.+....++.-||..|=.++.|+..... .|.+.+.+.=++.+.+....+.++|.|++.+|..=
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W 110 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTW 110 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHH
Confidence 344455555555556677777777778888665544 55566667767777776535788999999888654
No 329
>PRK14707 hypothetical protein; Provisional
Probab=26.14 E-value=1.5e+03 Score=29.21 Aligned_cols=176 Identities=12% Similarity=0.083 Sum_probs=95.7
Q ss_pred HHHHHHHH-HccCCCCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcC-
Q 015496 151 QRALQELL-ILVEPIDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS- 227 (405)
Q Consensus 151 ~~AL~~L~-~Lve~iDnA~~~~~~Ggi~~Lv~lL-~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s- 227 (405)
..|...|. .++++.+--.+|..- |+.-+++-| +-++..+=..|+..|+.-.-.+++.++.+--.+ |...+.-|+.
T Consensus 392 ~~aa~~LA~~l~~d~~l~~~~~~Q-~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~-va~~LnalSKW 469 (2710)
T PRK14707 392 AAAASALAEHVVDDLELRKGLDPQ-GVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPIN-VTQALDALSKW 469 (2710)
T ss_pred HHHHHHHHHHhccChhhhhhcchh-hHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHH-HHHHHHHhhcC
Confidence 34444444 466777666666655 455555555 568888888999999988888898888764444 3334444433
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCC
Q 015496 228 SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF 307 (405)
Q Consensus 228 ~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g 307 (405)
++..+...|..+|..=+.+.+...+.|--.+....|-.+=+-+ +......-+.|+...+.. .......|...+
T Consensus 470 Pd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~P-d~~~c~~A~~~lA~rl~~------~~~l~~~~~~~~ 542 (2710)
T PRK14707 470 PDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWP-DTPICAEAASALAERVVD------ELQLRKAFDAHQ 542 (2710)
T ss_pred CCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHhcc------chhhhhhhhhHH
Confidence 5556666677777776666666666665444444444433333 223333334444444331 112222233333
Q ss_pred cHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015496 308 FLKSVVDLTASADLDLQEKALAAIKNLL 335 (405)
Q Consensus 308 ~l~~Lv~LL~~~D~~v~E~al~aL~~L~ 335 (405)
+...+-.+-+.++.+..+.+...|..+.
T Consensus 543 ~~~~lnalSKwp~s~~C~~A~~~iA~~l 570 (2710)
T PRK14707 543 VVNTLKALSKWPDKQLCAVAASGLAERL 570 (2710)
T ss_pred HHHHHHhhhcCCchhHHHHHHHHHHHHh
Confidence 3333333334455555555554555443
No 330
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=26.09 E-value=4.3e+02 Score=25.63 Aligned_cols=170 Identities=15% Similarity=0.091 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHccCCC-----CchhHHHhcCCHH-HHHHhcCC--CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHH
Q 015496 148 EDSQRALQELLILVEPI-----DNANDLSKLGGLS-VLVGQLNH--PDTDIRKISAWILGKASQNNPLVQKQVLELGALS 219 (405)
Q Consensus 148 e~k~~AL~~L~~Lve~i-----DnA~~~~~~Ggi~-~Lv~lL~s--~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp 219 (405)
++....|.+|...+... +-++.+.+.+.++ -|+.+|.+ .++.+-..++.++.+++. |--.
T Consensus 9 ~dcl~~LkdL~r~lr~dd~~~~~v~r~lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~--P~~~---------- 76 (266)
T PF04821_consen 9 DDCLECLKDLKRFLRRDDEDQRDVRRQLGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTW--PIEL---------- 76 (266)
T ss_pred HhHHHHHHHHHHHHHHhCcchHHHHHHHHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCC--CHHH----------
Confidence 45666666666655322 2255566666666 66777743 478899999999999885 2111
Q ss_pred HHHHhhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhh----cC-----CCccHHHHHHHHHHHHHHhh
Q 015496 220 KLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL----GN-----SSFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 220 ~Ll~LL~s~-~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL----~s-----~~~~~kl~~kA~~lLs~L~~ 289 (405)
+ ..+. .+........-+ ...-.....+|.+.+.+..++..+ .. +..+..+...++.++.|+..
T Consensus 77 -~---~~~~~~~~~~~~~~~~l---~~~l~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~ 149 (266)
T PF04821_consen 77 -L---VESQPKDKNQRRNIPEL---LKYLQSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLA 149 (266)
T ss_pred -h---ccCCCCChHHHHHHHHH---HHHHHHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhc
Confidence 0 1111 011111111111 111112233444444444444433 11 12366778889999999975
Q ss_pred chhccCC------------CCcchhHHhCCcHHHHHHhccCC-ChHHHHHHHHHHHHHhcC
Q 015496 290 CQLENMH------------KVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQL 337 (405)
Q Consensus 290 ~~~~~~~------------~~~~~~l~~~g~l~~Lv~LL~~~-D~~v~E~al~aL~~L~~~ 337 (405)
=.. .+. ......|.+.|+..-|+.+..+. ..++....+..+..|..+
T Consensus 150 Ip~-~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~ 209 (266)
T PF04821_consen 150 IPD-PPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKG 209 (266)
T ss_pred CCC-CcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcC
Confidence 210 000 01233456778888888887765 345555777777777765
No 331
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=26.07 E-value=1.1e+02 Score=34.97 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=17.8
Q ss_pred CCCHHHHHHhHHHHHHHHHHc
Q 015496 104 RLSPSELKKRQMEIKELMEKL 124 (405)
Q Consensus 104 ~~s~e~l~~r~~~L~~a~~~~ 124 (405)
.-|+||+++.|++|++||+.+
T Consensus 519 gAsdeEI~~Lm~eLR~Am~~y 539 (851)
T TIGR02302 519 GASDEEIKQLTDKLRAAMQTY 539 (851)
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 358889999999999999754
No 332
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=26.04 E-value=3.2e+02 Score=24.95 Aligned_cols=29 Identities=14% Similarity=0.114 Sum_probs=15.5
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 015496 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRN 246 (405)
Q Consensus 216 G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~ 246 (405)
..+|.+++||.-+ ..+...+.-|..-+++
T Consensus 70 ~~F~~l~~LL~~~--~y~~~ll~Glv~S~G~ 98 (193)
T PF12612_consen 70 EYFPRLVKLLDLP--EYRYSLLSGLVVSAGG 98 (193)
T ss_pred HHHHHHHHHhccH--HHHHHHHhHHHhcCCC
Confidence 4677788777653 3444444444433333
No 333
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=25.89 E-value=1.3e+02 Score=34.27 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=17.2
Q ss_pred CCHHHHHHhHHHHHHHHHHc
Q 015496 105 LSPSELKKRQMEIKELMEKL 124 (405)
Q Consensus 105 ~s~e~l~~r~~~L~~a~~~~ 124 (405)
-|.|||+++|++|++||+.+
T Consensus 489 As~eEI~rLm~eLR~A~~~y 508 (820)
T PF13779_consen 489 ASDEEIARLMQELREAMQDY 508 (820)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 47789999999999999754
No 334
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=25.67 E-value=1.5e+02 Score=20.93 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=22.0
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHhcCChhhHHH
Q 015496 311 SVVDLTASADLDLQEKALAAIKNLLQLRTTEALV 344 (405)
Q Consensus 311 ~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~ 344 (405)
.++++|..++...+++.+.+|..+++-+++..+.
T Consensus 11 vl~~fl~~~~~~~~~~llpvi~tlL~fs~~e~~~ 44 (46)
T PF01465_consen 11 VLLQFLESREPSEREQLLPVIATLLKFSPEEKQK 44 (46)
T ss_dssp HHHHHHTTSS---HHHHHHHHHHHTT--HHHHHH
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHHCCCHHHHHh
Confidence 3567777777888888889999998887665444
No 335
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=25.45 E-value=3e+02 Score=24.68 Aligned_cols=87 Identities=10% Similarity=0.053 Sum_probs=62.7
Q ss_pred cCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhc-cCCChHH
Q 015496 245 RNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT-ASADLDL 323 (405)
Q Consensus 245 r~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL-~~~D~~v 323 (405)
+|++..-+.|.+.+.+..+.++++.. ....++......++-|..+- .++...-.+.+++.+..++..- .-.|.++
T Consensus 13 q~~~~~Fd~F~E~nil~~f~~il~~~-~~~~V~~QlLQtlsiLiqNi---~~~~slyyllSnn~iN~iI~~~~d~~~ee~ 88 (149)
T PF09758_consen 13 QNDPSFFDFFMEKNILSTFVRILKQS-RSSSVKLQLLQTLSILIQNI---RSETSLYYLLSNNHINEIITYPFDFSDEEV 88 (149)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHhc---CCCcceEEEecchHHHHHHhcCCCCCcchh
Confidence 45667788999999999999999873 45667888888888887652 3444555667788888877653 3346677
Q ss_pred HHHHHHHHHHHh
Q 015496 324 QEKALAAIKNLL 335 (405)
Q Consensus 324 ~E~al~aL~~L~ 335 (405)
...=...|..|+
T Consensus 89 l~yYIsfLK~lS 100 (149)
T PF09758_consen 89 LSYYISFLKTLS 100 (149)
T ss_pred HHHHHHHHHHHH
Confidence 776666666665
No 336
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.40 E-value=9.9e+02 Score=29.44 Aligned_cols=181 Identities=13% Similarity=0.086 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHccCCCCchhHHHhc-CCHHHHHHhcCCCCHHHHHHH---HHHHHHHhc-----CChHhHHHHHHcCcHH
Q 015496 149 DSQRALQELLILVEPIDNANDLSKL-GGLSVLVGQLNHPDTDIRKIS---AWILGKASQ-----NNPLVQKQVLELGALS 219 (405)
Q Consensus 149 ~k~~AL~~L~~Lve~iDnA~~~~~~-Ggi~~Lv~lL~s~~~~Ir~~A---a~~Lg~~aq-----NN~~~Q~~vle~G~lp 219 (405)
.|+.+.-+|.+|+...++-....++ ..|..+.+-.+.-.+.+|..| |.+|+.++- -|+.--+.+++ ..+|
T Consensus 1055 VReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~-~iLP 1133 (1702)
T KOG0915|consen 1055 VREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALD-IILP 1133 (1702)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHH-HHHH
Confidence 5678888999998877654444443 456666666555557777654 555555442 23433333432 4677
Q ss_pred HHHH--hhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCC
Q 015496 220 KLMK--MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 297 (405)
Q Consensus 220 ~Ll~--LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~ 297 (405)
.|+. ++ ++-+++|.-++..+.-++.+.+.....+. ..-++.|+.+.+.- .+..+---++.+ .+.-.+. .+.
T Consensus 1134 fLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s~l-E~~vLnYls~r~-~~~e~ea---lDt 1206 (1702)
T KOG0915|consen 1134 FLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHF-PKLIPLLLNAYSEL-EPQVLNYLSLRL-INIETEA---LDT 1206 (1702)
T ss_pred HHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchh-hHHHHHHHHHcccc-chHHHHHHHHhh-hhhHHHH---HHH
Confidence 7774 33 55578999999999999998776444332 22355555555543 122221122222 2221111 111
Q ss_pred CcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496 298 VEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (405)
Q Consensus 298 ~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~ 337 (405)
...+.....-+...+-.+++.-|..+.|.-.--+..+..+
T Consensus 1207 ~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~ 1246 (1702)
T KOG0915|consen 1207 LRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRG 1246 (1702)
T ss_pred HHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 1111122234555555566666666666555555555443
No 337
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=24.96 E-value=3.3e+02 Score=30.93 Aligned_cols=62 Identities=18% Similarity=0.198 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhH
Q 015496 185 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ 251 (405)
Q Consensus 185 s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~ 251 (405)
.+=+.++.+|..+|..+-.|-|++-..+ +..|+.-|..+...+..+|.|-|-.|.+.||...
T Consensus 315 D~L~~vk~raL~ti~~lL~~kPEqE~~L-----L~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK 376 (988)
T KOG2038|consen 315 DPLEEVKKRALKTIYDLLTNKPEQENNL-----LVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMK 376 (988)
T ss_pred ccHHHHHHHHHHHHHHHHhCCcHHHHHH-----HHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcce
Confidence 3558899999999999999999876643 4667777777777889999999999999988753
No 338
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=24.46 E-value=2.1e+02 Score=22.74 Aligned_cols=47 Identities=11% Similarity=0.113 Sum_probs=35.7
Q ss_pred cHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhc
Q 015496 217 ALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG 268 (405)
Q Consensus 217 ~lp~Ll~LL~s-~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~ 268 (405)
.+.|+..++.+ .+.++|...+.+|..++..+.... ..||+.+..++.
T Consensus 18 fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i-----~SGW~~if~il~ 65 (86)
T PF09324_consen 18 FLKPFEYIMSNNPSIDVRELILECILQILQSRGENI-----KSGWKVIFSILR 65 (86)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHH-----HhccHHHHHHHH
Confidence 45788888654 457899999999999997665332 258999988885
No 339
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=24.13 E-value=4.7e+02 Score=22.54 Aligned_cols=72 Identities=17% Similarity=0.117 Sum_probs=44.4
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC--cHHHHHHhhcC------CCccHHHHHHHHHHHHHHh
Q 015496 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA--GDLMLQDILGN------SSFEIRLHRKAVSLVGDLA 288 (405)
Q Consensus 217 ~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~g--Gi~~L~~lL~s------~~~~~kl~~kA~~lLs~L~ 288 (405)
.+..|.+=|++.++.|+.|+|--|-.+|++.++.....+..+ .|..+..+=.. +.....+|..|--++.-|.
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 356788888888888999999999999988765444443322 33333333221 1123556666666666554
No 340
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=23.51 E-value=91 Score=22.30 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q 015496 4 RRNRIASRALWLLVLLMITMAIG 26 (405)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~ 26 (405)
|||+.+-.++++++++.+++..+
T Consensus 13 ~~nk~a~~gl~il~~~vl~ai~~ 35 (56)
T PF12911_consen 13 RRNKLAVIGLIILLILVLLAIFA 35 (56)
T ss_pred HhCchHHHHHHHHHHHHHHHHHH
Confidence 68888888888888887776665
No 341
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=23.47 E-value=3e+02 Score=29.30 Aligned_cols=42 Identities=14% Similarity=0.274 Sum_probs=33.9
Q ss_pred CcchhHHhCCcHHHHHHhccCC-ChHHHHHHHHHHHHHhcCCh
Q 015496 298 VEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLRT 339 (405)
Q Consensus 298 ~~~~~l~~~g~l~~Lv~LL~~~-D~~v~E~al~aL~~L~~~~~ 339 (405)
...+.+.+.++++.|+++|... +.+++..|+..|+.+...+.
T Consensus 53 ~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 53 GILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred HHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 4555677899999999999754 88999999999888876543
No 342
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=22.69 E-value=2e+02 Score=28.24 Aligned_cols=62 Identities=19% Similarity=0.253 Sum_probs=45.5
Q ss_pred HHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC-------hhh-------HHHHHhcCCchHHHHHHHHHHHH
Q 015496 303 FRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR-------TTE-------ALVLKDFCGLDTALERLRQQLQE 364 (405)
Q Consensus 303 l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~-------~~~-------~~~v~~~~Gl~~~L~~L~~~~~~ 364 (405)
..+..++..+++-|.+.|...+-.++++|.+++++. .++ ...+.+.+|+.+....|+..++.
T Consensus 56 ~~~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~~~~~ 131 (293)
T PF07923_consen 56 DQRKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKMFIEN 131 (293)
T ss_pred hhHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 445688899999999999999999999999999874 111 23345456666777777766644
No 343
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=22.58 E-value=2.6e+02 Score=23.15 Aligned_cols=61 Identities=20% Similarity=0.368 Sum_probs=41.4
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 015496 179 LVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA 249 (405)
Q Consensus 179 Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~ 249 (405)
.++-|..+.+.|+..+.|++.+.-.. + . .+..+.+-+...+.+-+...+|-+..++++...
T Consensus 5 ~L~~L~~s~~~I~~lt~~~~~~~~~a-~----~-----Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~ 65 (121)
T smart00582 5 KLESLNNSQESIQTLTKWAIEHASHA-K----E-----IVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKR 65 (121)
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHH-H----H-----HHHHHHHHHHhCCccceehhHHhHHHHHHHHhh
Confidence 44555667889999999999876533 1 1 334445555554455677899999999998643
No 344
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=22.45 E-value=2.2e+02 Score=22.68 Aligned_cols=52 Identities=25% Similarity=0.359 Sum_probs=39.5
Q ss_pred hCCcHHHHHHhcc-CCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHHH
Q 015496 305 DRFFLKSVVDLTA-SADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQ 361 (405)
Q Consensus 305 ~~g~l~~Lv~LL~-~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~ 361 (405)
+..+++.+..++. ..+.++|+..+.++.+++.. +...++ .|....+.-|..-
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~---~~~~i~--SGW~~if~il~~a 67 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQS---RGENIK--SGWKVIFSILRAA 67 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH---hHHHHH--hccHHHHHHHHHH
Confidence 4567777888754 45899999999999999964 445554 7888888888643
No 345
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=21.77 E-value=3.3e+02 Score=22.48 Aligned_cols=69 Identities=17% Similarity=0.147 Sum_probs=44.8
Q ss_pred CcHHHHHHhhcC----CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496 216 GALSKLMKMVKS----SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 216 G~lp~Ll~LL~s----~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~ 289 (405)
|.+..+-..+.+ .+...+.+++.+|+.+++-..+....|. +-+..+|++.-....++..|+.+-..+..
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~-----pQI~a~L~sal~~~~l~~~al~~W~~fi~ 83 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSAR-----PQIMACLQSALEIPELREEALSCWNCFIK 83 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHH-----HHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 566666666655 2346799999999999996666555443 44555555431123477778777777765
No 346
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=21.68 E-value=1.5e+02 Score=22.21 Aligned_cols=32 Identities=25% Similarity=0.398 Sum_probs=26.0
Q ss_pred CCHHHHHHhc-C-CCCHHHHHHHHHHHHHHhcCC
Q 015496 174 GGLSVLVGQL-N-HPDTDIRKISAWILGKASQNN 205 (405)
Q Consensus 174 Ggi~~Lv~lL-~-s~~~~Ir~~Aa~~Lg~~aqNN 205 (405)
|.+..|+.++ + +.++.+|..|+-.|-+....+
T Consensus 14 ~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~ 47 (77)
T PF03810_consen 14 GFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKN 47 (77)
T ss_dssp CHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHc
Confidence 5677888888 4 348999999999999988765
No 347
>PF11894 DUF3414: Protein of unknown function (DUF3414); InterPro: IPR021827 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 764 to 2011 amino acids in length. This protein has a conserved LLG sequence motif.
Probab=21.51 E-value=2.7e+02 Score=34.51 Aligned_cols=60 Identities=8% Similarity=0.142 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhcCChHhHHHHHHc---CcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChh
Q 015496 190 IRKISAWILGKASQNNPLVQKQVLEL---GALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLA 249 (405)
Q Consensus 190 Ir~~Aa~~Lg~~aqNN~~~Q~~vle~---G~lp~Ll~LL~s~~-~~v~~kAl~ALS~lir~~~~ 249 (405)
.-..-..+|+.++++++..+..+.+. ..++.|++++..+- ..++...+.+|++++...+.
T Consensus 580 ~L~a~L~Li~~V~~~s~~ar~~l~~~~~~~~~~~L~~L~~~~vp~~Lkaai~~~Laal~~~~~~ 643 (1691)
T PF11894_consen 580 MLSAYLRLISSVVRNSEQARSALLENPNWNPIDILFGLLSCPVPPSLKAAIFNALAALAAKSPE 643 (1691)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHhCCCCchHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCHH
Confidence 44666789999999999999999876 47999999998864 47899999999999633433
No 348
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.38 E-value=1.3e+03 Score=29.12 Aligned_cols=119 Identities=15% Similarity=0.083 Sum_probs=64.5
Q ss_pred cHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHH------HHhh
Q 015496 217 ALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG------DLAK 289 (405)
Q Consensus 217 ~lp~Ll~LL~s~~-~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs------~L~~ 289 (405)
++..++.+-.++. +.|+.-+++|++-++..+.+....+++..-.-.+.-++..+.....+..+--..+. ++.+
T Consensus 959 ~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alit 1038 (2067)
T KOG1822|consen 959 SVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALIT 1038 (2067)
T ss_pred HHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHH
Confidence 4667777777665 48999999999999887777776665544333333334433323333333322332 3333
Q ss_pred chh----ccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015496 290 CQL----ENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336 (405)
Q Consensus 290 ~~~----~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~ 336 (405)
.-+ .|+.++....++. .++-...-++.++|+.++..+..++.++.-
T Consensus 1039 tlgpeL~~N~~~d~t~~~rt-s~la~~allls~~d~lnqa~ai~clqqlhl 1088 (2067)
T KOG1822|consen 1039 TLGPELGPNGDKDSTSTLRT-SCLAACALLLSHSDPLNQAAAIKCLQQLHL 1088 (2067)
T ss_pred hcccccCCCCcccchhHHHH-HHHHHHHHhcCCCccchHHHHHHHHHHHHh
Confidence 211 1222222222222 222223334566688888888888877654
No 349
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=20.94 E-value=1.7e+02 Score=24.62 Aligned_cols=44 Identities=11% Similarity=-0.043 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcC-ChHhHHHHHHcCcHHHHHHhhcC
Q 015496 184 NHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMKMVKS 227 (405)
Q Consensus 184 ~s~~~~Ir~~Aa~~Lg~~aqN-N~~~Q~~vle~G~lp~Ll~LL~s 227 (405)
...+-++-..+..+|...+|+ +++.|..+.+...+..+..+|..
T Consensus 63 ~~~~~~~~~q~~~tL~E~iQGPC~eNQ~~l~~s~~~~~i~~lL~~ 107 (109)
T PF08454_consen 63 NSDNIELIIQCFDTLTEFIQGPCIENQIALANSKFLDIINDLLSK 107 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHhHHHHHHccHHHHHHHHHhh
Confidence 445667778889999999999 99999999999999998888853
No 350
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=20.57 E-value=4.1e+02 Score=20.52 Aligned_cols=50 Identities=20% Similarity=0.215 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHH
Q 015496 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILG 199 (405)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL-~s~~~~Ir~~Aa~~Lg 199 (405)
+.+..+.+|..|..+- .-.++.+.-.+-..|+.| +|+++.|+..|..++.
T Consensus 19 ~~~~~~~~L~~L~~~~----it~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~ 69 (76)
T cd00183 19 EVSRLLDLLRLLKKLP----LTVEILKETRIGKKVNSLRKHSNEKIRKLAKALIK 69 (76)
T ss_pred CHHHHHHHHHHHhcCC----CCHHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5566667777777642 333455556677778877 5788999988887764
No 351
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=20.24 E-value=1.2e+02 Score=27.26 Aligned_cols=7 Identities=43% Similarity=0.738 Sum_probs=4.2
Q ss_pred CcchhHH
Q 015496 1 MNTRRNR 7 (405)
Q Consensus 1 ~~~~~~~ 7 (405)
||+||.+
T Consensus 1 M~~~r~r 7 (155)
T PRK13159 1 MNATRKQ 7 (155)
T ss_pred CChhhhh
Confidence 7766644
No 352
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=20.19 E-value=1.2e+02 Score=27.52 Aligned_cols=39 Identities=21% Similarity=0.043 Sum_probs=16.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhhhHHHhhccCCCcccccc
Q 015496 1 MNTRRNRIASRALWLLVLLMITMAIGRAERVNNSSSAGLFWST 43 (405)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (405)
||+||.+ |.+|+++.+..++++. +-.....+++..+|-|
T Consensus 1 M~~~r~r---Rl~~v~~~~~~~~~a~-~Lvl~al~~n~~yF~t 39 (159)
T PRK13150 1 MNLRRKN---RLWVVCAVLAGLGLTT-ALVLYALRANIDLFYT 39 (159)
T ss_pred CChhhhh---HHHHHHHHHHHHHHHH-HHHHHHHhhCccEEeC
Confidence 7766644 2222222223333333 3344444444444444
No 353
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=20.16 E-value=2.5e+02 Score=27.96 Aligned_cols=81 Identities=23% Similarity=0.137 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHccCCCCchhHHHh-cCCHHHHHHhcCCC--CHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHH
Q 015496 145 LSLEDSQRALQELLILVEPIDNANDLSK-LGGLSVLVGQLNHP--DTDIRKISAWILGKASQNNPLVQKQVLELGALSKL 221 (405)
Q Consensus 145 ~t~e~k~~AL~~L~~Lve~iDnA~~~~~-~Ggi~~Lv~lL~s~--~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~L 221 (405)
.+.|+..-.+..++.+..+.+....=.. ..--..++.++-++ ..++|..|..++..+...+|.. +....+..+
T Consensus 174 ~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l 249 (339)
T PF12074_consen 174 ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGL 249 (339)
T ss_pred CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHH
Q ss_pred HHhhcCCC
Q 015496 222 MKMVKSSF 229 (405)
Q Consensus 222 l~LL~s~~ 229 (405)
-..+...+
T Consensus 250 ~~~l~~~~ 257 (339)
T PF12074_consen 250 WKWLSSSE 257 (339)
T ss_pred HHHHHhcc
Done!