Query 015496
Match_columns 405
No_of_seqs 272 out of 1211
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 13:38:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015496.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015496hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xqr_A HSPBP1 protein; armadil 100.0 1.7E-38 5.7E-43 311.0 21.6 263 115-392 14-289 (296)
2 3ul1_B Importin subunit alpha- 99.9 5.6E-26 1.9E-30 236.3 25.1 262 133-403 59-339 (510)
3 3tpo_A Importin subunit alpha- 99.9 3.6E-25 1.2E-29 230.9 27.1 262 133-403 78-358 (529)
4 4hxt_A De novo protein OR329; 99.9 1.9E-22 6.4E-27 186.5 24.4 216 133-358 4-220 (252)
5 3nmw_A APC variant protein; AR 99.9 9E-24 3.1E-28 211.4 15.6 249 147-403 46-328 (354)
6 4b8j_A Importin subunit alpha- 99.9 5.2E-22 1.8E-26 205.4 29.2 260 133-403 76-352 (528)
7 4db6_A Armadillo repeat protei 99.9 1.5E-22 5.1E-27 184.0 21.6 191 137-336 18-209 (210)
8 1xm9_A Plakophilin 1; armadill 99.9 2.8E-22 9.5E-27 206.0 23.6 175 133-317 4-195 (457)
9 4db8_A Armadillo-repeat protei 99.9 2.6E-22 8.8E-27 187.2 21.2 205 146-358 25-230 (252)
10 3tpo_A Importin subunit alpha- 99.9 7.5E-22 2.6E-26 205.8 24.3 261 133-403 121-400 (529)
11 3now_A UNC-45 protein, SD10334 99.9 1.4E-22 4.8E-27 221.1 18.8 264 131-403 377-688 (810)
12 3ul1_B Importin subunit alpha- 99.9 4.9E-22 1.7E-26 206.6 21.0 261 133-403 102-381 (510)
13 4hxt_A De novo protein OR329; 99.9 1.4E-21 4.6E-26 180.8 21.4 222 173-403 1-235 (252)
14 1wa5_B Importin alpha subunit; 99.9 6.4E-21 2.2E-25 197.8 28.0 260 133-403 89-364 (530)
15 4db6_A Armadillo repeat protei 99.9 2.3E-21 7.9E-26 176.1 21.1 181 171-359 9-189 (210)
16 3nmw_A APC variant protein; AR 99.9 1.4E-21 4.9E-26 195.4 21.3 209 147-358 98-313 (354)
17 3nmz_A APC variant protein; pr 99.9 4.4E-22 1.5E-26 205.5 17.3 246 151-403 166-444 (458)
18 4db8_A Armadillo-repeat protei 99.9 4E-21 1.4E-25 179.0 19.8 196 132-336 55-251 (252)
19 4b8j_A Importin subunit alpha- 99.9 1.4E-20 4.9E-25 194.6 23.2 260 133-403 119-394 (528)
20 2jdq_A Importin alpha-1 subuni 99.9 5.9E-20 2E-24 184.2 26.0 262 133-403 22-299 (450)
21 3nmz_A APC variant protein; pr 99.9 8.9E-21 3E-25 195.7 20.1 210 147-358 214-430 (458)
22 2jdq_A Importin alpha-1 subuni 99.9 5.8E-20 2E-24 184.2 24.6 261 132-403 65-341 (450)
23 1xm9_A Plakophilin 1; armadill 99.8 2.9E-20 9.9E-25 191.0 20.8 175 175-359 3-195 (457)
24 1wa5_B Importin alpha subunit; 99.8 6.8E-20 2.3E-24 190.0 23.7 261 133-403 132-406 (530)
25 3now_A UNC-45 protein, SD10334 99.8 3.1E-20 1.1E-24 202.7 20.1 261 131-403 421-731 (810)
26 3tt9_A Plakophilin-2; cell adh 99.8 1.5E-19 5.1E-24 170.9 18.5 178 175-360 9-205 (233)
27 1jdh_A Beta-catenin; beta-cate 99.8 5.4E-19 1.8E-23 181.1 24.0 264 132-403 60-379 (529)
28 1xqr_A HSPBP1 protein; armadil 99.8 2.4E-19 8.4E-24 175.1 20.2 205 188-401 54-271 (296)
29 3l6x_A Catenin delta-1; cateni 99.8 1.1E-19 3.9E-24 192.2 17.0 266 133-403 50-470 (584)
30 2z6h_A Catenin beta-1, beta-ca 99.8 1.4E-18 4.8E-23 185.0 25.1 265 131-403 56-376 (644)
31 3tt9_A Plakophilin-2; cell adh 99.8 5.9E-19 2E-23 166.8 16.4 197 133-336 10-229 (233)
32 3l6x_A Catenin delta-1; cateni 99.8 5.5E-18 1.9E-22 179.3 21.8 179 172-358 46-243 (584)
33 2z6g_A B-catenin; FULL-length, 99.8 1.3E-17 4.3E-22 182.2 24.8 264 132-403 193-512 (780)
34 1jdh_A Beta-catenin; beta-cate 99.7 9.2E-17 3.1E-21 164.5 20.6 216 134-359 188-407 (529)
35 2z6h_A Catenin beta-1, beta-ca 99.7 1.9E-16 6.6E-21 168.5 22.1 259 134-402 185-520 (644)
36 2z6g_A B-catenin; FULL-length, 99.7 1.1E-15 3.7E-20 166.9 19.5 221 174-403 399-657 (780)
37 3opb_A SWI5-dependent HO expre 99.5 4.2E-13 1.4E-17 145.0 16.4 217 132-360 458-708 (778)
38 3opb_A SWI5-dependent HO expre 99.5 8.7E-13 3E-17 142.6 17.3 167 166-338 449-637 (778)
39 3grl_A General vesicular trans 99.4 8.2E-12 2.8E-16 132.1 19.6 241 112-359 38-320 (651)
40 3grl_A General vesicular trans 99.2 6.9E-10 2.4E-14 117.5 20.2 220 127-358 17-262 (651)
41 4gmo_A Putative uncharacterize 99.1 6.3E-10 2.2E-14 119.8 13.4 170 175-351 35-228 (684)
42 3ltj_A Alpharep-4; protein eng 99.0 6.1E-08 2.1E-12 86.9 19.5 154 129-334 12-165 (201)
43 3ltm_A Alpha-REP4; protein eng 98.9 6.1E-08 2.1E-12 87.6 18.1 154 130-335 18-171 (211)
44 3ltj_A Alpharep-4; protein eng 98.8 4.9E-08 1.7E-12 87.6 14.3 151 133-335 47-197 (201)
45 3ltm_A Alpha-REP4; protein eng 98.8 4.9E-08 1.7E-12 88.2 13.9 154 133-338 52-205 (211)
46 4gmo_A Putative uncharacterize 98.8 2.2E-08 7.4E-13 107.8 12.8 192 136-335 39-257 (684)
47 1oyz_A Hypothetical protein YI 98.8 4.7E-07 1.6E-11 85.3 18.9 121 183-335 100-220 (280)
48 1oyz_A Hypothetical protein YI 98.7 5.1E-07 1.8E-11 85.0 17.6 146 146-335 104-249 (280)
49 4fdd_A Transportin-1; heat rep 98.4 5.1E-07 1.7E-11 98.5 10.1 174 150-335 338-511 (852)
50 1te4_A Conserved protein MTH18 98.4 2.3E-08 7.9E-13 84.6 -0.5 119 174-333 12-130 (131)
51 1b3u_A Protein (protein phosph 98.4 6.8E-06 2.3E-10 84.3 16.3 177 145-335 176-352 (588)
52 1b3u_A Protein (protein phosph 98.3 5.2E-06 1.8E-10 85.1 14.3 172 146-335 415-586 (588)
53 3dad_A FH1/FH2 domain-containi 98.3 3E-05 1E-09 76.2 18.8 193 128-326 115-326 (339)
54 2qk2_A LP04448P; mini spindles 98.3 1.1E-05 3.8E-10 74.7 15.0 173 145-336 27-205 (242)
55 4fdd_A Transportin-1; heat rep 98.3 6E-06 2E-10 90.0 15.2 180 146-337 269-472 (852)
56 2vgl_B AP-2 complex subunit be 98.3 1E-05 3.4E-10 85.3 16.2 161 112-290 29-190 (591)
57 3b2a_A TON_1937, putative unch 98.3 5.9E-05 2E-09 70.7 19.1 186 132-338 34-220 (265)
58 2vgl_B AP-2 complex subunit be 98.3 2.6E-05 8.9E-10 82.1 18.7 166 146-339 26-192 (591)
59 1ibr_B P95, importin beta-1 su 98.1 6.3E-05 2.1E-09 74.6 17.2 199 130-337 171-438 (462)
60 2qk1_A Protein STU2; STU2P, XM 98.1 9.4E-05 3.2E-09 69.6 17.2 182 145-336 28-220 (249)
61 2bpt_A Importin beta-1 subunit 98.1 4.2E-05 1.4E-09 82.2 14.9 183 148-340 346-533 (861)
62 1w63_A Adapter-related protein 98.0 0.0001 3.4E-09 78.2 17.0 199 113-338 51-265 (618)
63 1qgr_A Protein (importin beta 98.0 4.7E-05 1.6E-09 82.0 14.1 180 149-338 344-539 (876)
64 1te4_A Conserved protein MTH18 98.0 5.3E-06 1.8E-10 69.8 5.0 87 176-286 44-130 (131)
65 3qml_C Protein SLS1, nucleotid 98.0 3E-05 1E-09 75.1 10.2 136 148-289 43-189 (315)
66 1u6g_C TIP120 protein, CAND1; 97.9 0.00013 4.5E-09 82.6 16.7 192 134-338 9-206 (1230)
67 1ibr_B P95, importin beta-1 su 97.9 3.3E-05 1.1E-09 76.6 10.5 199 130-337 34-247 (462)
68 1w63_A Adapter-related protein 97.8 0.00067 2.3E-08 71.8 19.0 163 147-339 48-211 (618)
69 2bpt_A Importin beta-1 subunit 97.8 6.5E-05 2.2E-09 80.8 10.4 196 131-337 498-712 (861)
70 3b2a_A TON_1937, putative unch 97.8 0.00037 1.3E-08 65.3 14.0 149 175-339 34-182 (265)
71 1u6g_C TIP120 protein, CAND1; 97.8 0.00074 2.5E-08 76.4 19.1 216 113-337 23-285 (1230)
72 2vgl_A Adaptor protein complex 97.7 0.0015 5.2E-08 69.3 19.0 167 144-338 49-218 (621)
73 1qgr_A Protein (importin beta 97.7 0.00084 2.9E-08 72.2 17.3 200 130-338 171-397 (876)
74 2qk2_A LP04448P; mini spindles 97.7 0.0007 2.4E-08 62.3 14.1 147 130-290 55-206 (242)
75 3tjz_B Coatomer subunit gamma; 97.5 0.013 4.4E-07 58.2 20.7 187 127-339 22-208 (355)
76 2db0_A 253AA long hypothetical 97.3 0.03 1E-06 50.8 19.6 188 131-346 32-220 (253)
77 2qk1_A Protein STU2; STU2P, XM 97.3 0.0058 2E-07 57.3 15.4 174 112-289 32-220 (249)
78 3dad_A FH1/FH2 domain-containi 97.2 0.0087 3E-07 58.8 15.9 153 179-339 123-289 (339)
79 2vgl_A Adaptor protein complex 97.2 0.0052 1.8E-07 65.1 14.9 129 146-290 87-217 (621)
80 4ffb_C Protein STU2; tubulin f 97.1 0.021 7.2E-07 53.7 16.8 180 146-337 22-213 (278)
81 2db0_A 253AA long hypothetical 96.8 0.066 2.3E-06 48.6 16.0 140 175-337 108-247 (253)
82 4ady_A RPN2, 26S proteasome re 96.4 0.12 4E-06 57.4 18.4 152 175-366 542-697 (963)
83 3eg5_B Protein diaphanous homo 95.9 0.46 1.6E-05 47.3 18.8 168 151-324 85-282 (383)
84 3tjz_B Coatomer subunit gamma; 95.9 0.77 2.6E-05 45.3 19.9 157 112-289 43-205 (355)
85 3eg5_B Protein diaphanous homo 95.6 2.1 7.1E-05 42.5 22.0 241 100-359 5-274 (383)
86 2of3_A ZYG-9; multifunctional 95.6 0.51 1.7E-05 44.8 16.5 171 146-337 59-237 (266)
87 2f31_A Diaphanous protein homo 95.5 0.25 8.6E-06 45.6 14.1 155 162-322 32-214 (233)
88 2iw3_A Elongation factor 3A; a 95.0 0.7 2.4E-05 51.5 17.9 184 131-336 133-324 (986)
89 1ho8_A Vacuolar ATP synthase s 95.0 1.8 6.3E-05 44.2 19.4 217 132-359 78-328 (480)
90 4ady_A RPN2, 26S proteasome re 94.9 0.27 9.3E-06 54.5 14.1 137 176-336 579-719 (963)
91 2fv2_A RCD1 required for cell 94.9 0.47 1.6E-05 44.8 13.6 207 131-346 3-233 (268)
92 2bnx_A Diaphanous protein homo 94.8 1.2 4.2E-05 44.2 17.5 158 162-325 36-221 (386)
93 3ibv_A Exportin-T; karyopherin 94.4 0.57 1.9E-05 52.2 15.4 112 126-246 1-120 (980)
94 3u0r_A Apoptosis inhibitor 5; 94.3 0.36 1.2E-05 49.5 12.3 122 185-333 39-160 (507)
95 4hat_C Exportin-1; heat repeat 94.3 0.36 1.2E-05 54.1 13.5 145 186-339 465-621 (1023)
96 2f31_A Diaphanous protein homo 94.1 0.88 3E-05 41.9 13.7 143 214-360 41-209 (233)
97 2x19_B Importin-13; nuclear tr 93.9 0.72 2.5E-05 50.4 14.8 138 184-338 459-601 (963)
98 1wa5_C Importin alpha RE-expor 93.4 0.77 2.6E-05 50.5 14.0 181 146-337 418-629 (960)
99 1ho8_A Vacuolar ATP synthase s 93.0 0.064 2.2E-06 55.0 4.2 82 166-247 385-478 (480)
100 3ebb_A Phospholipase A2-activa 92.9 2.9 0.0001 40.2 15.7 174 103-289 75-263 (304)
101 2iw3_A Elongation factor 3A; a 92.9 1.2 4E-05 49.8 14.3 153 151-320 70-226 (986)
102 3gs3_A Symplekin, LD45768P; he 92.8 6.3 0.00022 36.9 22.0 131 146-289 28-173 (257)
103 2x19_B Importin-13; nuclear tr 92.6 1.6 5.4E-05 47.6 14.9 136 145-289 461-599 (963)
104 2fv2_A RCD1 required for cell 92.5 1.2 4E-05 42.2 11.6 199 79-289 2-224 (268)
105 1wa5_C Importin alpha RE-expor 92.4 2.6 8.8E-05 46.3 16.3 193 135-337 459-671 (960)
106 2x1g_F Cadmus; transport prote 92.1 0.85 2.9E-05 50.0 12.0 131 146-289 477-615 (971)
107 2bnx_A Diaphanous protein homo 92.0 1 3.6E-05 44.7 11.5 141 215-359 46-212 (386)
108 1upk_A MO25 protein; transfera 91.9 6.4 0.00022 38.4 16.5 143 193-341 142-288 (341)
109 2x1g_F Cadmus; transport prote 91.2 1.6 5.4E-05 47.8 13.0 134 186-337 476-616 (971)
110 1lsh_A Lipovitellin (LV-1N, LV 91.0 1.2 3.9E-05 50.2 11.7 126 185-344 451-584 (1056)
111 3qml_C Protein SLS1, nucleotid 90.7 2.2 7.7E-05 41.2 11.7 108 217-335 72-188 (315)
112 3m1i_C Exportin-1; heat repeat 90.4 6.3 0.00022 43.7 17.0 161 189-364 428-596 (1049)
113 1lsh_A Lipovitellin (LV-1N, LV 90.0 2.8 9.5E-05 47.1 13.6 196 101-332 319-539 (1056)
114 3m1i_C Exportin-1; heat repeat 89.8 3.5 0.00012 45.7 14.3 147 186-338 465-620 (1049)
115 3o2t_A Symplekin; heat repeat, 89.8 13 0.00045 36.9 16.9 195 131-340 25-260 (386)
116 4hat_C Exportin-1; heat repeat 89.5 1.9 6.7E-05 48.2 11.9 135 219-364 454-596 (1023)
117 3c2g_A SYS-1 protein; beta-cat 87.6 5.4 0.00018 39.6 11.9 183 151-335 261-472 (619)
118 4ffb_C Protein STU2; tubulin f 87.1 7 0.00024 36.1 12.4 145 179-336 14-168 (278)
119 3ebb_A Phospholipase A2-activa 86.8 9.8 0.00034 36.4 13.4 147 130-280 146-297 (304)
120 3gjx_A Exportin-1; transport, 86.6 17 0.00058 40.9 17.1 109 127-246 24-142 (1073)
121 1mhq_A ADP-ribosylation factor 86.3 2.1 7.3E-05 36.7 7.6 68 176-243 40-114 (148)
122 1x5b_A Signal transducing adap 86.0 2.1 7.1E-05 37.4 7.5 67 176-242 54-122 (163)
123 1upk_A MO25 protein; transfera 85.9 24 0.00083 34.4 15.6 182 152-337 142-333 (341)
124 1juq_A ADP-ribosylation factor 85.8 2.1 7E-05 37.8 7.4 69 176-244 52-127 (171)
125 3ldz_A STAM-1, signal transduc 85.6 2 6.8E-05 36.5 7.0 68 176-243 44-112 (140)
126 3u0r_A Apoptosis inhibitor 5; 85.0 15 0.00052 37.6 14.2 121 146-289 41-163 (507)
127 2of3_A ZYG-9; multifunctional 84.1 17 0.0006 34.1 13.5 141 180-336 52-196 (266)
128 1lrv_A LRV, leucine-rich repea 83.2 0.5 1.7E-05 44.1 2.3 44 178-239 78-121 (244)
129 1lrv_A LRV, leucine-rich repea 82.6 0.46 1.6E-05 44.4 1.8 21 177-197 101-121 (244)
130 3g2s_A C-terminal fragment of 82.2 7.1 0.00024 33.5 9.2 70 176-245 50-126 (149)
131 1elk_A Target of MYB1; superhe 78.7 6.5 0.00022 33.9 7.8 67 176-242 55-127 (157)
132 3ldz_A STAM-1, signal transduc 77.9 5.5 0.00019 33.7 7.0 89 236-335 25-113 (140)
133 1dvp_A HRS, hepatocyte growth 77.1 6.2 0.00021 35.8 7.5 67 176-242 44-112 (220)
134 3zyq_A Hepatocyte growth facto 76.3 5.5 0.00019 36.5 7.0 69 176-244 47-117 (226)
135 3oc3_A Helicase MOT1, MOT1; re 74.7 7.8 0.00027 40.9 8.1 160 148-335 243-403 (800)
136 1x5b_A Signal transducing adap 72.9 7.9 0.00027 33.6 6.8 89 236-335 35-124 (163)
137 2xpp_A IWS1, ECU08_0440; trans 72.7 14 0.00048 31.6 8.1 87 148-238 35-129 (145)
138 3a6p_A Exportin-5; exportin-5, 72.6 41 0.0014 38.0 14.3 105 133-246 13-126 (1204)
139 3l9t_A Putative uncharacterize 72.4 53 0.0018 30.4 12.5 137 180-344 77-215 (240)
140 1mhq_A ADP-ribosylation factor 71.6 11 0.00036 32.3 7.2 89 236-335 21-115 (148)
141 3g2s_A C-terminal fragment of 71.1 15 0.00051 31.5 8.0 109 217-336 11-126 (149)
142 1juq_A ADP-ribosylation factor 69.9 8.1 0.00028 33.9 6.2 109 217-336 13-128 (171)
143 3gjx_A Exportin-1; transport, 66.4 94 0.0032 34.9 15.3 137 186-338 491-646 (1073)
144 3l9t_A Putative uncharacterize 65.7 84 0.0029 29.0 12.3 119 147-289 85-207 (240)
145 3zyq_A Hepatocyte growth facto 63.7 9.2 0.00031 35.0 5.4 109 216-335 7-117 (226)
146 3ibv_A Exportin-T; karyopherin 61.8 68 0.0023 35.5 13.0 151 182-336 201-361 (980)
147 4atg_A TAF6; transcription, TF 59.7 96 0.0033 27.7 12.0 157 104-287 4-192 (196)
148 1elk_A Target of MYB1; superhe 51.9 29 0.001 29.7 6.4 90 236-335 36-129 (157)
149 1dvp_A HRS, hepatocyte growth 49.0 26 0.00088 31.6 5.8 88 237-335 26-114 (220)
150 3pst_A Protein DOA1; protein d 44.6 2.5E+02 0.0086 28.0 12.9 71 150-226 243-314 (425)
151 3a6p_A Exportin-5; exportin-5, 39.7 2.8E+02 0.0097 31.1 13.7 131 186-336 25-162 (1204)
152 3rru_A TOM1L1 protein; structu 38.8 65 0.0022 27.5 6.4 73 176-248 55-133 (152)
153 1vdy_A Hypothetical protein (R 36.8 46 0.0016 28.2 5.1 91 236-337 31-131 (140)
154 3l3f_X Protein DOA1, DOA1/UFD3 34.1 3.4E+02 0.012 26.4 13.1 128 150-289 180-326 (362)
155 3oc3_A Helicase MOT1, MOT1; re 31.5 1.4E+02 0.0047 31.7 8.4 139 177-335 177-327 (800)
156 1sz9_A PCF11 protein; RNA poly 29.9 2.4E+02 0.0083 23.5 9.3 90 186-287 23-112 (144)
157 4flb_A Regulation of nuclear P 29.8 43 0.0015 27.4 3.7 62 176-247 10-71 (132)
158 3gae_A Protein DOA1; UFD3, CDC 26.4 2.6E+02 0.0088 25.5 8.8 164 104-289 34-217 (253)
159 1et1_A Parathyroid hormone; he 26.1 35 0.0012 21.9 1.8 13 112-124 19-31 (34)
160 1bwx_A Parathyroid hormone; pe 25.5 36 0.0012 22.5 1.8 13 112-124 19-31 (39)
161 3l3f_X Protein DOA1, DOA1/UFD3 25.2 4.8E+02 0.016 25.3 11.7 133 191-338 180-328 (362)
162 1nzn_A CGI-135 protein, fissio 25.0 1.7E+02 0.0056 24.2 6.4 50 185-241 32-81 (126)
163 3rru_A TOM1L1 protein; structu 24.0 1.1E+02 0.0038 26.0 5.3 91 236-336 36-130 (152)
164 3h3g_B Parathyroid hormone-rel 23.7 45 0.0015 19.7 1.8 17 108-125 5-21 (24)
165 3o2t_A Symplekin; heat repeat, 22.7 5.5E+02 0.019 25.1 12.4 113 216-335 63-182 (386)
166 1vsy_5 Proteasome activator BL 22.2 1.4E+02 0.0049 33.1 7.1 160 121-289 786-966 (997)
167 3pst_A Protein DOA1; protein d 20.8 6.3E+02 0.021 25.1 11.9 134 191-339 243-392 (425)
No 1
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=100.00 E-value=1.7e-38 Score=311.00 Aligned_cols=263 Identities=24% Similarity=0.287 Sum_probs=215.6
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHhhcC----------CCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHH-hc
Q 015496 115 MEIKELMEKLKTPSDAQLIQIAIDDLNNS----------TLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVG-QL 183 (405)
Q Consensus 115 ~~L~~a~~~~~~~~d~~lmk~al~~L~~~----------~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~-lL 183 (405)
.||.++|+ ++||++++||+++.+|.++ +.+.++|..|++.|.++++++|||++|++.||+|+|+. +|
T Consensus 14 ~~~~~~~~--~~~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL 91 (296)
T 1xqr_A 14 VPRGSHMR--GQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYL 91 (296)
T ss_dssp ------CC--SCHHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTT
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHH
Confidence 57777775 4589999999999999997 44668999999999999999999999999999999999 99
Q ss_pred CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHH
Q 015496 184 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 262 (405)
Q Consensus 184 ~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~-~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~ 262 (405)
+++++.+|..|+|+||++++|||.+|+.+++.|++|+|+.+|+++ +..++++|+|||||++|++++..+.|.+.||+++
T Consensus 92 ~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~ 171 (296)
T 1xqr_A 92 EAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSV 171 (296)
T ss_dssp TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHH
Confidence 999999999999999999999999999999999999999999864 6889999999999999999999999999999999
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhH
Q 015496 263 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEA 342 (405)
Q Consensus 263 L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~ 342 (405)
|+.+|+++ +.+++++|+|+|++|+.+ +++.+..+++.|+++.|+.+|.++|.+++++++++|.+|+.+.+...
T Consensus 172 L~~lL~~~--d~~v~~~A~~aLs~L~~~-----~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~ 244 (296)
T 1xqr_A 172 LMRAMQQQ--VQKLKVKSAFLLQNLLVG-----HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGV 244 (296)
T ss_dssp HHHHHHSS--CHHHHHHHHHHHHHHHHH-----CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCC--CHHHHHHHHHHHHHHHhC-----ChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHH
Confidence 99999986 789999999999999963 56788899999999999999999999999999999999998744333
Q ss_pred HHHHhcCCchHHHHHHHHHHHHhhhchhhhh-hHHHHHHHHHHHHHHHhhh
Q 015496 343 LVLKDFCGLDTALERLRQQLQEVMLEEDQRD-YAMDVEALRREVELIFFRK 392 (405)
Q Consensus 343 ~~v~~~~Gl~~~L~~L~~~~~~l~~~~~q~~-~~~d~~~l~~e~~~~~~~k 392 (405)
..+. . +-......|...++.+-. ++ +-..++......+.+|.+.
T Consensus 245 ~~~~-~-~~~~l~~lL~~~~~~lq~----~e~~~e~~~~~~~il~~~f~~~ 289 (296)
T 1xqr_A 245 RECR-E-PELGLEELLRHRCQLLQQ----HEEYQEELEFCEKLLQTCFSSP 289 (296)
T ss_dssp HHHH-C-GGGCHHHHHHHHHHHHTT----CGGGHHHHHHHHHHHHHHCC--
T ss_pred HHHh-c-cHHHHHHHHHHHHHHccc----hHHHHHHHHHHHHHHHHHcCCC
Confidence 3332 1 112233344333333321 22 3333455666667777543
No 2
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.94 E-value=5.6e-26 Score=236.34 Aligned_cols=262 Identities=17% Similarity=0.223 Sum_probs=221.0
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCc--hhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhH
Q 015496 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN--ANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQ 209 (405)
Q Consensus 133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDn--A~~~~~~Ggi~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aqNN~~~Q 209 (405)
+.+.++.+.+. +++.+..|...++.++....| .+.+++.|++|+||++|+ ++++.+|..|+|+|+|++.+|++.+
T Consensus 59 i~~~v~~l~s~--d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 59 VEDIVKGINSN--NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp HHHHHHHHTSS--CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 55666777654 678899999999998755444 578999999999999997 5679999999999999999999999
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCC---ccHHHHHHHHHHHHH
Q 015496 210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS---FEIRLHRKAVSLVGD 286 (405)
Q Consensus 210 ~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~---~~~kl~~kA~~lLs~ 286 (405)
+.+++.|++|.|+++|++++..++..|+|||+||+.+++..++.+.+.||+++|+.++.++. ....+++.++|++++
T Consensus 137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 216 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 216 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998653 235678999999999
Q ss_pred HhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHHH----H
Q 015496 287 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQ----L 362 (405)
Q Consensus 287 L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~----~ 362 (405)
++.++ ..........++++.|+.+|.+++.+++..++++|.+|+..+.+..+.+. ..|+.+.|..|..+ .
T Consensus 217 l~~~~-----~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~v 290 (510)
T 3ul1_B 217 LCRNK-----NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVV-KKGVVPQLVKLLGATELPI 290 (510)
T ss_dssp HHCCC-----SSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHH-TTTCHHHHHHHHTCSCHHH
T ss_pred Hhhcc-----cchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHH-hcccchhhhhhhcCCChhh
Confidence 99742 12222334468999999999999999999999999999998877777777 66666666665521 1
Q ss_pred --------HHhhh-chhhhhhHHHHHHHHHHHHHHHhhhccccccchhcc
Q 015496 363 --------QEVML-EEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCWN 403 (405)
Q Consensus 363 --------~~l~~-~~~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~~~~~ 403 (405)
..+.+ ++.+++++.+.++++....++.+++ ..|++++||+
T Consensus 291 ~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~-~~v~~~A~~a 339 (510)
T 3ul1_B 291 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPK-TNIQKEATWT 339 (510)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSS-HHHHHHHHHH
T ss_pred hhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCC-HHHHHHHHHH
Confidence 12344 6789999999999999999999999 8999999996
No 3
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.94 E-value=3.6e-25 Score=230.93 Aligned_cols=262 Identities=17% Similarity=0.217 Sum_probs=221.2
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCC--chhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhH
Q 015496 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPID--NANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQ 209 (405)
Q Consensus 133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iD--nA~~~~~~Ggi~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aqNN~~~Q 209 (405)
+.+.++.+.+. +++.+..|+..+..++..-. ....+++.|++|+|+.+|. ++++.+|..|+|+|++++.+++..+
T Consensus 78 l~~lv~~l~s~--d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 78 VEDIVKGINSN--NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp HHHHHHHHTSS--CHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 45556666554 67889999999998875443 3578999999999999996 5679999999999999999999999
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCC---ccHHHHHHHHHHHHH
Q 015496 210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS---FEIRLHRKAVSLVGD 286 (405)
Q Consensus 210 ~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~---~~~kl~~kA~~lLs~ 286 (405)
+.+++.|++|.|+.+|.+++..++..|+|||+||+.+++..++.+++.||+++|+.+|..+. ....+++.++|++++
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998652 235678999999999
Q ss_pred HhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHHH----H
Q 015496 287 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQ----L 362 (405)
Q Consensus 287 L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~----~ 362 (405)
++.++ ..........++++.|+.+|.+++.+++..++++|.+|+..+.+..+.+. ..|+.+.|..|..+ .
T Consensus 236 l~~~~-----~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~-~~g~i~~Lv~lL~~~~~~v 309 (529)
T 3tpo_A 236 LCRNK-----NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVV-KKGVVPQLVKLLGATELPI 309 (529)
T ss_dssp HHCCC-----TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH-TTTCHHHHHHHHTCSCHHH
T ss_pred HHhcc-----cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHH-hccchHHHHHHhcCCChhH
Confidence 99752 12222334468999999999999999999999999999998887778887 66666666665521 1
Q ss_pred --------HHhhh-chhhhhhHHHHHHHHHHHHHHHhhhccccccchhcc
Q 015496 363 --------QEVML-EEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCWN 403 (405)
Q Consensus 363 --------~~l~~-~~~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~~~~~ 403 (405)
..+.+ ++.+++.+.+.++++...+++.+++ ..|++++||+
T Consensus 310 ~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~-~~i~~~a~~a 358 (529)
T 3tpo_A 310 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPK-TNIQKEATWT 358 (529)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCC-HHHHHHHHHH
Confidence 22444 6789999999999999999999999 8999999996
No 4
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.91 E-value=1.9e-22 Score=186.54 Aligned_cols=216 Identities=18% Similarity=0.225 Sum_probs=191.2
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCC-chhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015496 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPID-NANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (405)
Q Consensus 133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iD-nA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~ 211 (405)
+...++.+.+++ .+.+..|+..|..++...+ +...+.+.|++++|+.+|+++++++|..|+++|++++.+++..+..
T Consensus 4 i~~L~~~L~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 4 VEKLVKLLTSTD--SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp HHHHHHHTTCSC--HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 455667777654 7889999999999987664 8899999999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhch
Q 015496 212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 291 (405)
Q Consensus 212 vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~ 291 (405)
+++.|+++.|+.+++++++.++..|+++|++++.+++.....+.+.|+++.|+.+++++ +..++..++++|.+|+..
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~~- 158 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASG- 158 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTS-
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcC-
Confidence 99999999999999999999999999999999999999999999999999999999986 678999999999999852
Q ss_pred hccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHH
Q 015496 292 LENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 358 (405)
Q Consensus 292 ~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L 358 (405)
++.....+.+.|+++.|+.+|.+++..+++.++++|.+|+......++.+. ..|+.+.|..+
T Consensus 159 ----~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~~~i~~L~~l 220 (252)
T 4hxt_A 159 ----PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIV-DAGGVEVLQKL 220 (252)
T ss_dssp ----CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHH-HTTHHHHHHHG
T ss_pred ----CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH-HCCCHHHHHHH
Confidence 445556788899999999999999999999999999999987677777777 55554444444
No 5
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.90 E-value=9e-24 Score=211.37 Aligned_cols=249 Identities=12% Similarity=0.101 Sum_probs=204.5
Q ss_pred HHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC-----------CCHHHHHHHHHHHHHHhcCChHhHHHHHHc
Q 015496 147 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH-----------PDTDIRKISAWILGKASQNNPLVQKQVLEL 215 (405)
Q Consensus 147 ~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s-----------~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~ 215 (405)
.+++..|+..|.++.-+.++...|++.||+++|+.+|.+ .++++|+.|+|+|.+++.+++..+..|...
T Consensus 46 ~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 356677888888888888899999999999999999942 357899999999999999998888888655
Q ss_pred -CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhcCcHHHHHHhh-cCCCccHHHHHHHHHHHHHHhhchh
Q 015496 216 -GALSKLMKMVKSSFVEEAVKALYTVSSLIRN-NLAGQEMFYVEAGDLMLQDIL-GNSSFEIRLHRKAVSLVGDLAKCQL 292 (405)
Q Consensus 216 -G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~-~~~~~~~f~~~gGi~~L~~lL-~s~~~~~kl~~kA~~lLs~L~~~~~ 292 (405)
|+||.|+++|++++++++..|+|||+|+..+ ++..+..+.+.||+++|+.+| +++ +..+++.|+.+|.+|+..
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~--~~~~~~~A~~aL~nLs~~-- 201 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK--KESTLKSVLSALWNLSAH-- 201 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHTT--
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC--CHHHHHHHHHHHHHHHcc--
Confidence 5599999999999999999999999999985 677899999999999999985 444 567899999999999852
Q ss_pred ccCCCCcchhHH-hCCcHHHHHHhccCCCh----HHHHHHHHHHHHHhc---CChhhHHHHHhcCCchHHHHHHHH---H
Q 015496 293 ENMHKVEPPLFR-DRFFLKSVVDLTASADL----DLQEKALAAIKNLLQ---LRTTEALVLKDFCGLDTALERLRQ---Q 361 (405)
Q Consensus 293 ~~~~~~~~~~l~-~~g~l~~Lv~LL~~~D~----~v~E~al~aL~~L~~---~~~~~~~~v~~~~Gl~~~L~~L~~---~ 361 (405)
.++.+..+. ..|.++.|+++|.+++. ++++.++++|.+|+. ..++.++.+.+.+++++++..|+. .
T Consensus 202 ---~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 278 (354)
T 3nmw_A 202 ---CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLT 278 (354)
T ss_dssp ---CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHH
T ss_pred ---ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChH
Confidence 334455666 78999999999987654 599999999999996 567788888855555555555542 1
Q ss_pred HHH--------hhh-chhhhhhHHHHHHHHHHHHHHHhhhccccccchhcc
Q 015496 362 LQE--------VML-EEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCWN 403 (405)
Q Consensus 362 ~~~--------l~~-~~~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~~~~~ 403 (405)
.+. +.. +.+|++++.+.++++..++++.... .++++++||.
T Consensus 279 v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~-~~i~~~A~~a 328 (354)
T 3nmw_A 279 IVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH-KMIAMGSAAA 328 (354)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHH
Confidence 111 332 5779999999999999999998777 7899999995
No 6
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.90 E-value=5.2e-22 Score=205.41 Aligned_cols=260 Identities=17% Similarity=0.226 Sum_probs=218.5
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC--CchhHHHhcCCHHHHHHhcCCCC-HHHHHHHHHHHHHHhcCChHhH
Q 015496 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPI--DNANDLSKLGGLSVLVGQLNHPD-TDIRKISAWILGKASQNNPLVQ 209 (405)
Q Consensus 133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i--DnA~~~~~~Ggi~~Lv~lL~s~~-~~Ir~~Aa~~Lg~~aqNN~~~Q 209 (405)
+...++.|.++ +++.+..|+..|..++... ++...++..|++|.|+.+|.+++ +.+|..|+|+|++++.+++..+
T Consensus 76 l~~lv~~L~s~--~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 76 LPAMIGGVYSD--DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp HHHHHHHHTSS--CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 56667777654 5788999999999886543 56788999999999999999876 9999999999999999999999
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496 210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 210 ~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~ 289 (405)
..+++.|++|.|+.+|.++++.++..|+|+|++++.+++..+..+...|+++.|+.+|..+ .+..+++.++|+|++|+.
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~-~~~~v~~~a~~~L~~L~~ 232 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH-TKLSMLRNATWTLSNFCR 232 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT-CCHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC-CCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999999544 367899999999999996
Q ss_pred chhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHHH----H---
Q 015496 290 CQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQ----L--- 362 (405)
Q Consensus 290 ~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~----~--- 362 (405)
.. +. .......|+++.|+.+|.++|.++++.++++|.+|+...+...+.+. ..|+.+.|..+... .
T Consensus 233 ~~-----~~-~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~-~~g~v~~Lv~lL~~~~~~v~~~ 305 (528)
T 4b8j_A 233 GK-----PQ-PSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLLHPSPSVLIP 305 (528)
T ss_dssp SS-----SC-CCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHH-HTTCHHHHHHHTTCSCHHHHHH
T ss_pred CC-----CC-CcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH-HcCHHHHHHHHHcCCChhHHHH
Confidence 41 22 22344589999999999999999999999999999988776667777 44555555554421 1
Q ss_pred -----HHhhh-chhhhhhHHHHHHHHHHHHHHHhh-hccccccchhcc
Q 015496 363 -----QEVML-EEDQRDYAMDVEALRREVELIFFR-KLGKVGTRLCWN 403 (405)
Q Consensus 363 -----~~l~~-~~~q~~~~~d~~~l~~e~~~~~~~-kl~~i~~~~~~~ 403 (405)
..+.. ++.+++.+.+.+.++...+++.+. + ..+++++||+
T Consensus 306 a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~~v~~~A~~~ 352 (528)
T 4b8j_A 306 ALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLK-KSIKKEACWT 352 (528)
T ss_dssp HHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCC-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCc-HHHHHHHHHH
Confidence 11333 567888888999999999999988 6 7999999996
No 7
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.90 E-value=1.5e-22 Score=183.96 Aligned_cols=191 Identities=18% Similarity=0.266 Sum_probs=174.2
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHcc-CCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc
Q 015496 137 IDDLNNSTLSLEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 215 (405)
Q Consensus 137 l~~L~~~~~t~e~k~~AL~~L~~Lv-e~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~ 215 (405)
...+.+. +.+.+..|+..|.++. .+.++...+.+.|+++.|+++|+++++.+|..|+|+|++++.+++..++.+++.
T Consensus 18 ~~LL~s~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 95 (210)
T 4db6_A 18 VQQLNSP--DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 95 (210)
T ss_dssp HHHTTCS--CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHhcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHC
Confidence 3444443 5788899999999998 556778899999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccC
Q 015496 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (405)
Q Consensus 216 G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~ 295 (405)
|++|.|+.+|+++++.++..|+|+|++++.+++...+.+++.|+++.|+.+++++ +..++..|+++|.+|+..
T Consensus 96 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~----- 168 (210)
T 4db6_A 96 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASG----- 168 (210)
T ss_dssp TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTS-----
T ss_pred CCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHHcC-----
Confidence 9999999999999999999999999999999999999999999999999999986 678999999999999953
Q ss_pred CCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015496 296 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336 (405)
Q Consensus 296 ~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~ 336 (405)
+++.+..+.+.|+++.|++++.+++.++++.|+.+|.+|++
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 45667788899999999999999999999999999999974
No 8
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.90 E-value=2.8e-22 Score=206.05 Aligned_cols=175 Identities=13% Similarity=0.114 Sum_probs=145.6
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCc-hhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015496 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN-ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (405)
Q Consensus 133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDn-A~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~ 211 (405)
+...+..|.++ +++.+..|+..|..++..-++ ...+.+.||+|+|+.+|+++++.+|..|+|+|.+++.+|++++..
T Consensus 4 l~~lv~~L~s~--~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 4 IPKAVQYLSSQ--DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHHHHHHSS--CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHCCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 34456667665 457899999999998866555 449999999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhc--------CCC------ccHHH
Q 015496 212 VLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG--------NSS------FEIRL 276 (405)
Q Consensus 212 vle~G~lp~Ll~LL~-s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~--------s~~------~~~kl 276 (405)
+++.|++|+|+++|+ +++++++..|+|+|+|++.+ +..+..+++ ||+++|+.+|. ++. .+..+
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v 159 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHH
Confidence 999999999999999 77889999999999999988 778888999 99999999993 221 24667
Q ss_pred HHHHHHHHHHHhhchhccCCCCcchhHHhC-CcHHHHHHhcc
Q 015496 277 HRKAVSLVGDLAKCQLENMHKVEPPLFRDR-FFLKSVVDLTA 317 (405)
Q Consensus 277 ~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~-g~l~~Lv~LL~ 317 (405)
++.|+|+|+||+.. ++.+..+.+. |+++.|+.+|.
T Consensus 160 ~~~a~~aL~nLs~~------~~~~~~i~~~~g~i~~Lv~lL~ 195 (457)
T 1xm9_A 160 FFNATGCLRNLSSA------DAGRQTMRNYSGLIDSLMAYVQ 195 (457)
T ss_dssp HHHHHHHHHHHTTS------HHHHHHHTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHccC------HHHHHHHHHcCCCHHHHHHHHH
Confidence 88999999999952 4455566665 66666665554
No 9
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.90 E-value=2.6e-22 Score=187.17 Aligned_cols=205 Identities=18% Similarity=0.244 Sum_probs=177.8
Q ss_pred CHHHHHHHHHHHHHcc-CCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh
Q 015496 146 SLEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (405)
Q Consensus 146 t~e~k~~AL~~L~~Lv-e~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~L 224 (405)
+.+.+..|+..|..++ .+.++...+.+.|++++|+.+|+++++++|..|+++|++++.+++..+..+++.|++|.|+.+
T Consensus 25 ~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 104 (252)
T 4db8_A 25 DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 104 (252)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHH
Confidence 3467778888885544 345567789999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHH
Q 015496 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (405)
Q Consensus 225 L~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~ 304 (405)
|+++++.++..|+++|++++.+.+.....+.+.|+++.|+.+|+++ +..++..|+++|.+|+.. +++....+.
T Consensus 105 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~-----~~~~~~~~~ 177 (252)
T 4db8_A 105 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASG-----GNEQIQAVI 177 (252)
T ss_dssp GGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTS-----CHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHcC-----ChHHHHHHH
Confidence 9999999999999999999988777668999999999999999886 678999999999999952 445666788
Q ss_pred hCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHH
Q 015496 305 DRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 358 (405)
Q Consensus 305 ~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L 358 (405)
+.|+++.|+.+|.+++..+++.++++|.+|+...++.++.+. ..|+.+.|..+
T Consensus 178 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~l 230 (252)
T 4db8_A 178 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVK-EAGALEKLEQL 230 (252)
T ss_dssp HTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHTT
T ss_pred HCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHH-HCCcHHHHHHH
Confidence 899999999999999999999999999999987777777777 55554444433
No 10
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.89 E-value=7.5e-22 Score=205.81 Aligned_cols=261 Identities=15% Similarity=0.169 Sum_probs=217.2
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCC-CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015496 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (405)
Q Consensus 133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~-iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~ 211 (405)
+...++.|... .+++.+..|...|.+++.. .++...+++.|++|+|+.+|.++++++|..|+|+|++++.+++..+..
T Consensus 121 ip~Lv~lL~~~-~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~ 199 (529)
T 3tpo_A 121 IPKFVSFLGKT-DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDL 199 (529)
T ss_dssp HHHHHHHHTCT-TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHH
Confidence 34456666544 3577888899999998754 457788999999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHhhcCCC-----HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 015496 212 VLELGALSKLMKMVKSSF-----VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGD 286 (405)
Q Consensus 212 vle~G~lp~Ll~LL~s~~-----~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~ 286 (405)
+++.|++++|+.++.+++ ..+...++|+|++++++..+........|+++.|+.++.++ +..++..|+|+|++
T Consensus 200 i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~--~~~v~~~a~~aL~~ 277 (529)
T 3tpo_A 200 VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN--DPEVLADSCWAISY 277 (529)
T ss_dssp HHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCC--cHHHHHHHHHHHHH
Confidence 999999999999998754 34577899999999999877666666678999999999986 67789999999999
Q ss_pred HhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHH----HH
Q 015496 287 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ----QL 362 (405)
Q Consensus 287 L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~----~~ 362 (405)
|+.+ +++....+.+.|+++.|+.+|.+++..+++.++++|.+|+.+.+..++.+. ..|+.+.|..|.. ..
T Consensus 278 l~~~-----~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~-~~g~l~~L~~LL~~~~~~i 351 (529)
T 3tpo_A 278 LTDG-----PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNI 351 (529)
T ss_dssp HHSS-----CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTGGGGHHHHTTCSSHHH
T ss_pred hhhh-----hhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHh-hcccHHHHHHHHcCCCHHH
Confidence 9852 445566788899999999999999999999999999999998877788887 4555455554442 22
Q ss_pred HH--------hhh-chhhhhhHHHHHHHHHHHHHHHhhhccccccchhcc
Q 015496 363 QE--------VML-EEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCWN 403 (405)
Q Consensus 363 ~~--------l~~-~~~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~~~~~ 403 (405)
+. +.. +.+|.+.+.+.+.++..+.++.+.. ..+++++||.
T Consensus 352 ~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~~A~~a 400 (529)
T 3tpo_A 352 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKTQKAAAWA 400 (529)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCC-HHHHHHHHHH
Confidence 11 223 5778889999999999999999888 6899999995
No 11
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.89 E-value=1.4e-22 Score=221.15 Aligned_cols=264 Identities=9% Similarity=-0.001 Sum_probs=213.6
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHh-cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh---
Q 015496 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK-LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP--- 206 (405)
Q Consensus 131 ~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~-~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~--- 206 (405)
.+.+.+...|.++..+.+.+..|.+.|.+|..+.+....++. .|++|+|+.+|+++++.++..|+|+|+|++.+++
T Consensus 377 ~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~ 456 (810)
T 3now_A 377 KLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQE 456 (810)
T ss_dssp HHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCC
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhh
Confidence 456667777777655668899999999999999888888886 6899999999999999999999999999998653
Q ss_pred --------------------------HhH---HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 015496 207 --------------------------LVQ---KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE 257 (405)
Q Consensus 207 --------------------------~~Q---~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~ 257 (405)
.++ +.+++.|++|.|+.+++++++.+++.|+|+|+|++. ++..+..++++
T Consensus 457 ~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~ 535 (810)
T 3now_A 457 MLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQE 535 (810)
T ss_dssp CCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHT
T ss_pred hhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHC
Confidence 234 788999999999999999999999999999999996 46799999999
Q ss_pred CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcc-hhHHhCCcHHHHHHhccCC-ChHHHHHHHHHHHHHh
Q 015496 258 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP-PLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLL 335 (405)
Q Consensus 258 gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~-~~l~~~g~l~~Lv~LL~~~-D~~v~E~al~aL~~L~ 335 (405)
||+++|+.+|+++ +...|+.|+|+|++|+.+ .+++.. ..-...|+++.|+++|.++ +...+..|++||.+|+
T Consensus 536 Gaip~Lv~LL~s~--~~~~k~~Aa~AL~nL~~~----~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa 609 (810)
T 3now_A 536 GGVKALLRMALEG--TEKGKRHATQALARIGIT----INPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLA 609 (810)
T ss_dssp THHHHHHHHHHSS--CHHHHHHHHHHHHHHHHH----SCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHccC--CHHHHHHHHHHHHHHhcC----CChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 9999999999986 567899999999999964 232210 0001236999999999876 4445578999999999
Q ss_pred cCChhhHHHHHhcCCchHHHHHHHHHH------------HHhhh-chhhhhhHHHHHHHHHHHHHHHhhhccccccchhc
Q 015496 336 QLRTTEALVLKDFCGLDTALERLRQQL------------QEVML-EEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCW 402 (405)
Q Consensus 336 ~~~~~~~~~v~~~~Gl~~~L~~L~~~~------------~~l~~-~~~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~~~~ 402 (405)
..+++.++.+.+. |..+.|..|..+- ..+++ ++.|++++.+.+.++..+.++.+.+ .++++++||
T Consensus 610 ~~~d~~~~~Ii~a-G~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d-~~vq~~Aa~ 687 (810)
T 3now_A 610 SMNESVRQRIIKE-QGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDED-EETATACAG 687 (810)
T ss_dssp TSCHHHHHHHHHT-THHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSS-HHHHHHHHH
T ss_pred cCCHHHHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCC-HHHHHHHHH
Confidence 9887777777744 4455555554321 12444 5677888744789999999999988 799999999
Q ss_pred c
Q 015496 403 N 403 (405)
Q Consensus 403 ~ 403 (405)
+
T Consensus 688 A 688 (810)
T 3now_A 688 A 688 (810)
T ss_dssp H
T ss_pred H
Confidence 6
No 12
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.89 E-value=4.9e-22 Score=206.63 Aligned_cols=261 Identities=15% Similarity=0.181 Sum_probs=215.6
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015496 133 IQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (405)
Q Consensus 133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve-~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~ 211 (405)
+...++.|.+.+ +++-+..|...|.+++. +.++...+++.|++|+|+.+|+++++++|..|+|+|++++.+++..+..
T Consensus 102 ip~LV~lL~~~~-~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~ 180 (510)
T 3ul1_B 102 IPKFVSFLGKTD-CSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDL 180 (510)
T ss_dssp HHHHHHHTTCTT-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHCCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 344566666543 56788889999999864 5578889999999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHhhcCCC-----HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 015496 212 VLELGALSKLMKMVKSSF-----VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGD 286 (405)
Q Consensus 212 vle~G~lp~Ll~LL~s~~-----~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~ 286 (405)
+++.|++++|+.++.+++ ..+...++|++++++++..+........|+++.|+.++.++ +..++..|+|+|++
T Consensus 181 v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~--~~~v~~~A~~aL~~ 258 (510)
T 3ul1_B 181 VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN--DPEVLADSCWAISY 258 (510)
T ss_dssp HHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcC--CHHHHHHHHHHHHH
Confidence 999999999999998754 34577899999999998766666666678899999999986 67799999999999
Q ss_pred HhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHH----HH
Q 015496 287 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ----QL 362 (405)
Q Consensus 287 L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~----~~ 362 (405)
|+.+ +++....+.+.|+++.|+.+|.+++..+++.++++|.+++...+..++.+. ..|+.+.|..|.. ..
T Consensus 259 L~~~-----~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~-~~g~l~~L~~LL~~~~~~v 332 (510)
T 3ul1_B 259 LTDG-----PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNI 332 (510)
T ss_dssp HTSS-----CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTGGGGCC-CTTCSSHHH
T ss_pred Hhhc-----hhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHh-hccchHHHHHHhcCCCHHH
Confidence 9852 345566788899999999999999999999999999999998877777887 4454444444431 11
Q ss_pred HH--------hhh-chhhhhhHHHHHHHHHHHHHHHhhhccccccchhcc
Q 015496 363 QE--------VML-EEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCWN 403 (405)
Q Consensus 363 ~~--------l~~-~~~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~~~~~ 403 (405)
+. +.. +.+|.+.+.+.+.++..++++.+.- ..+++++||.
T Consensus 333 ~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~~Aa~a 381 (510)
T 3ul1_B 333 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKTQKEAAWA 381 (510)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHH
Confidence 11 323 5778899999999999999998887 6899999995
No 13
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.89 E-value=1.4e-21 Score=180.75 Aligned_cols=222 Identities=16% Similarity=0.158 Sum_probs=191.9
Q ss_pred cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHH
Q 015496 173 LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE 252 (405)
Q Consensus 173 ~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~ 252 (405)
+|+++.|+.+|+++++++|..|+++|++++.+++..+..+++.|+++.|+++++++++.++..|+++|++++.+++..+.
T Consensus 1 ~~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 1 MNDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CCHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred HHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHH
Q 015496 253 MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIK 332 (405)
Q Consensus 253 ~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~ 332 (405)
.+.+.||++.|+.+|+++ +..++..|+++|.+|+. .+++....+.+.|+++.|+++|.+++..++..++++|.
T Consensus 81 ~~~~~~~i~~l~~ll~~~--~~~v~~~a~~~L~~l~~-----~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~ 153 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTST--DSEVQKEAARALANIAS-----GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALA 153 (252)
T ss_dssp HHHHTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHTT-----SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHc-----CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999999976 67899999999999995 24567778889999999999999999999999999999
Q ss_pred HHhcCChhhHHHHHhcCCchHHHHHHHH----HHH--------Hhhh-chhhhhhHHHHHHHHHHHHHHHhhhccccccc
Q 015496 333 NLLQLRTTEALVLKDFCGLDTALERLRQ----QLQ--------EVML-EEDQRDYAMDVEALRREVELIFFRKLGKVGTR 399 (405)
Q Consensus 333 ~L~~~~~~~~~~v~~~~Gl~~~L~~L~~----~~~--------~l~~-~~~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~ 399 (405)
+|+...+..++.+. ..|+.+.|..+.. ..+ .+.. +..++++..+.+.++...+++.++. ..++++
T Consensus 154 ~l~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~v~~~ 231 (252)
T 4hxt_A 154 NIASGPDEAIKAIV-DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTD-SEVQKE 231 (252)
T ss_dssp HHTTSCHHHHHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHH
T ss_pred HHHcCCHHHHHHHH-HCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCc-HHHHHH
Confidence 99987777767777 4565555555542 111 1233 5667778888888888888888776 688999
Q ss_pred hhcc
Q 015496 400 LCWN 403 (405)
Q Consensus 400 ~~~~ 403 (405)
++|.
T Consensus 232 a~~~ 235 (252)
T 4hxt_A 232 AQRA 235 (252)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9885
No 14
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.88 E-value=6.4e-21 Score=197.77 Aligned_cols=260 Identities=14% Similarity=0.166 Sum_probs=216.3
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC--CchhHHHhcCCHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCChHhH
Q 015496 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPI--DNANDLSKLGGLSVLVGQLNHP-DTDIRKISAWILGKASQNNPLVQ 209 (405)
Q Consensus 133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i--DnA~~~~~~Ggi~~Lv~lL~s~-~~~Ir~~Aa~~Lg~~aqNN~~~Q 209 (405)
+...++.|.+. +++.+..|+..|..++... .+...+++.|++|.|+.+|.++ ++.+|..|+|+|++++.+++..+
T Consensus 89 i~~lv~~L~s~--~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 89 LPQMTQQLNSD--DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp HHHHHHHHSCS--SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 44555666654 5788999999999987643 3456788999999999999986 89999999999999999999999
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496 210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 210 ~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~ 289 (405)
..+++.|++|.|+.+|.++++.++..|+|+|++++.+++...+.+...|+++.|+.++.+. +..+++.|+|+|++|+.
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN--KPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC--CHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC--CHHHHHHHHHHHHHHhC
Confidence 9999999999999999998999999999999999999899999999999999999999984 67899999999999996
Q ss_pred chhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHHH----H---
Q 015496 290 CQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQ----L--- 362 (405)
Q Consensus 290 ~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~----~--- 362 (405)
+. + .........++++.|+.+|.++|..++..++++|.+|+....+..+.+. ..|+.+.|..+..+ .
T Consensus 245 ~~----~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~~v~~Lv~lL~~~~~~v~~~ 318 (530)
T 1wa5_B 245 GK----K-PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVI-DVRIPKRLVELLSHESTLVQTP 318 (530)
T ss_dssp CS----S-SCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHH-HTTCHHHHHHGGGCSCHHHHHH
T ss_pred CC----C-CCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHH-hcCcHHHHHHHHCCCChhhHHH
Confidence 41 1 2223455689999999999999999999999999999987766667776 45555555444321 1
Q ss_pred -----HHhhh-chhhhhhHHHHHHHHHHHHHHHhhhccccccchhcc
Q 015496 363 -----QEVML-EEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCWN 403 (405)
Q Consensus 363 -----~~l~~-~~~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~~~~~ 403 (405)
..+.. ++.+++.+.+.+.++....++.++. ..+++++||+
T Consensus 319 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~vr~~A~~a 364 (530)
T 1wa5_B 319 ALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPK-ENIKKEACWT 364 (530)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCC-HHHHHHHHHH
Confidence 11333 4667888888899999999999987 7999999995
No 15
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.88 E-value=2.3e-21 Score=176.07 Aligned_cols=181 Identities=19% Similarity=0.202 Sum_probs=160.2
Q ss_pred HhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh
Q 015496 171 SKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG 250 (405)
Q Consensus 171 ~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~ 250 (405)
...|+.++|+.+|+++++++|..|+|+|++++.+++..+..+++.|++|.|+++|+++++.++..|+++|++++.+++..
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 44688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHH
Q 015496 251 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAA 330 (405)
Q Consensus 251 ~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~a 330 (405)
.+.+++.||++.|+.+|+++ +..++..|+++|.+|+. .+++....+.+.|+++.|+++|.+++..+++.++++
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~-----~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a 161 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIAS-----GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 161 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTT-----SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCC--cHHHHHHHHHHHHHHHc-----CCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999987 67899999999999995 245566678899999999999999999999999999
Q ss_pred HHHHhcCChhhHHHHHhcCCchHHHHHHH
Q 015496 331 IKNLLQLRTTEALVLKDFCGLDTALERLR 359 (405)
Q Consensus 331 L~~L~~~~~~~~~~v~~~~Gl~~~L~~L~ 359 (405)
|.+|+..++..+..+. ..|+.+.|..+.
T Consensus 162 L~~l~~~~~~~~~~~~-~~g~i~~L~~ll 189 (210)
T 4db6_A 162 LSNIASGGNEQKQAVK-EAGALEKLEQLQ 189 (210)
T ss_dssp HHHHHTSCHHHHHHHH-HTTHHHHHHHGG
T ss_pred HHHHHcCCcHHHHHHH-HCCCHHHHHHHH
Confidence 9999998777777777 556655544443
No 16
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.88 E-value=1.4e-21 Score=195.39 Aligned_cols=209 Identities=17% Similarity=0.165 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHHHccCCCC-chhHHHhcCC-HHHHHHhcCCCCHHHHHHHHHHHHHHhcC-ChHhHHHHHHcCcHHHHHH
Q 015496 147 LEDSQRALQELLILVEPID-NANDLSKLGG-LSVLVGQLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMK 223 (405)
Q Consensus 147 ~e~k~~AL~~L~~Lve~iD-nA~~~~~~Gg-i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqN-N~~~Q~~vle~G~lp~Ll~ 223 (405)
++-+..|...|.+++..-+ +...+...|| +|+|+.+|+++++++|..|+|+|++++.+ |+..+..|.+.|+||+|++
T Consensus 98 ~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~ 177 (354)
T 3nmw_A 98 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME 177 (354)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHH
Confidence 4678899999999987665 5555656767 99999999999999999999999999986 7889999999999999999
Q ss_pred hh-cCCCHHHHHHHHHHHHHHhcCChhhHHHHH-hcCcHHHHHHhhcCCCcc--HHHHHHHHHHHHHHhhchhccCCCCc
Q 015496 224 MV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFY-VEAGDLMLQDILGNSSFE--IRLHRKAVSLVGDLAKCQLENMHKVE 299 (405)
Q Consensus 224 LL-~s~~~~v~~kAl~ALS~lir~~~~~~~~f~-~~gGi~~L~~lL~s~~~~--~kl~~kA~~lLs~L~~~~~~~~~~~~ 299 (405)
+| ++++..++..|+.||.|+..+++..+..+. ..||+++|+.+|.+++.. ..++..|+++|+||+..- ..+++.
T Consensus 178 lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~--a~~~~~ 255 (354)
T 3nmw_A 178 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI--ATNEDH 255 (354)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHH--TTCHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhc--cCCHHH
Confidence 74 667788999999999999887777777887 789999999999876321 258999999999998410 024567
Q ss_pred chhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHH
Q 015496 300 PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 358 (405)
Q Consensus 300 ~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L 358 (405)
+..+.+.|+++.|+.+|.+++..+++.|+++|.+|+....++++.+. ..|..+.|..|
T Consensus 256 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~-~~G~i~~Lv~L 313 (354)
T 3nmw_A 256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALW-DMGAVSMLKNL 313 (354)
T ss_dssp HHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHH-HTTHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHH-HCCCHHHHHHH
Confidence 78899999999999999999999999999999999976677888888 44554444443
No 17
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.88 E-value=4.4e-22 Score=205.45 Aligned_cols=246 Identities=13% Similarity=0.111 Sum_probs=201.4
Q ss_pred HHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcC-----------CCCHHHHHHHHHHHHHHhcCChHhHHHHHHc-CcH
Q 015496 151 QRALQELLILVEPIDNANDLSKLGGLSVLVGQLN-----------HPDTDIRKISAWILGKASQNNPLVQKQVLEL-GAL 218 (405)
Q Consensus 151 ~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~-----------s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~-G~l 218 (405)
..|...|.++..+.+|...|.+.||+++|+.+|. +.++.+|+.|+|+|.+++.+++..+..+... |+|
T Consensus 166 ~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaI 245 (458)
T 3nmz_A 166 CPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCM 245 (458)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcH
Confidence 3788888888888889999999999999999994 2457899999999999999998888877655 559
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCC
Q 015496 219 SKLMKMVKSSFVEEAVKALYTVSSLIRN-NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 297 (405)
Q Consensus 219 p~Ll~LL~s~~~~v~~kAl~ALS~lir~-~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~ 297 (405)
|.|+++|++++++++..|+|||+++..+ ++..+..+.+.||+++|+.+|.+. .+..+++.|+.+|.||+.+ .+
T Consensus 246 p~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s-~~~~v~~~A~~aL~nLs~~-----~~ 319 (458)
T 3nmz_A 246 RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV-KKESTLKSVLSALWNLSAH-----CT 319 (458)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTC-CSHHHHHHHHHHHHHHHHH-----CH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcC-CCHHHHHHHHHHHHHHccC-----CH
Confidence 9999999999999999999999999885 677889999999999999986543 2677899999999999862 22
Q ss_pred CcchhHH-hCCcHHHHHHhccCCCh----HHHHHHHHHHHHHhc---CChhhHHHHHhcCCchHHHHHHHH---HHHH--
Q 015496 298 VEPPLFR-DRFFLKSVVDLTASADL----DLQEKALAAIKNLLQ---LRTTEALVLKDFCGLDTALERLRQ---QLQE-- 364 (405)
Q Consensus 298 ~~~~~l~-~~g~l~~Lv~LL~~~D~----~v~E~al~aL~~L~~---~~~~~~~~v~~~~Gl~~~L~~L~~---~~~~-- 364 (405)
+.+..+. ..|.++.|+.+|.+++. ++++.|+++|.+|+. ..++.++.+.+.+++++++..|+. ..+.
T Consensus 320 ~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A 399 (458)
T 3nmz_A 320 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNA 399 (458)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHH
Confidence 3455666 78999999999998754 599999999999996 567788888855555555555541 1111
Q ss_pred ------hhh-chhhhhhHHHHHHHHHHHHHHHhhhccccccchhcc
Q 015496 365 ------VML-EEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCWN 403 (405)
Q Consensus 365 ------l~~-~~~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~~~~~ 403 (405)
+.. +.+|++++.+.++++..++++.... .++++.+||.
T Consensus 400 ~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~-~~v~~~Aa~A 444 (458)
T 3nmz_A 400 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH-KMIAMGSAAA 444 (458)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSS-HHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHH
Confidence 332 5789999999999999999987766 7899999985
No 18
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.87 E-value=4e-21 Score=179.05 Aligned_cols=196 Identities=17% Similarity=0.222 Sum_probs=177.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015496 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (405)
Q Consensus 132 lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve-~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~ 210 (405)
.+...++.+.+++ .+.+..|+..|.+++. +.++...+.+.|++++|+.+|+++++.+|..|+|+|++++.+++..+.
T Consensus 55 ~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 132 (252)
T 4db8_A 55 ALPALVQLLSSPN--EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132 (252)
T ss_dssp HHHHHHHGGGCSC--HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHH
Confidence 4556677777653 7889999999999997 567888999999999999999999999999999999999998887768
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (405)
Q Consensus 211 ~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~ 290 (405)
.+++.|++|.|++++++++..++..|+++|++++.+++.....+.+.|+++.|+.+++++ +..++..|+++|.+|+.
T Consensus 133 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~- 209 (252)
T 4db8_A 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIAS- 209 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS--SHHHHHHHHHHHHHHTT-
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCC--CHHHHHHHHHHHHHHhc-
Confidence 899999999999999999999999999999999999989899999999999999999986 67899999999999995
Q ss_pred hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015496 291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336 (405)
Q Consensus 291 ~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~ 336 (405)
.+++....+.+.|+++.|+.++.++++++++.|+++|.+|+.
T Consensus 210 ----~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 210 ----GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp ----SCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred ----CCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 355667788899999999999999999999999999999874
No 19
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.86 E-value=1.4e-20 Score=194.58 Aligned_cols=260 Identities=15% Similarity=0.161 Sum_probs=214.9
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCC-CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015496 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (405)
Q Consensus 133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~-iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~ 211 (405)
+...++.|.+++ +++.+..|+..|..+... .++...++..|++++|+.+|.++++.+|..|+|+|++++.+++..+..
T Consensus 119 v~~Lv~lL~~~~-~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 197 (528)
T 4b8j_A 119 VPRFVQFLTRED-FPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDL 197 (528)
T ss_dssp HHHHHHHHTCTT-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHH
Confidence 455666666542 478889999999999875 577888999999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496 212 VLELGALSKLMKMV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (405)
Q Consensus 212 vle~G~lp~Ll~LL-~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~ 290 (405)
+++.|+++.|+.++ .+++..++..|+|+|++++++.+... .....|+++.|+.+|.++ +..++..|+++|++|+..
T Consensus 198 i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~l~~L~~lL~~~--~~~v~~~a~~aL~~l~~~ 274 (528)
T 4b8j_A 198 VLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPS-FEQTRPALPALARLIHSN--DEEVLTDACWALSYLSDG 274 (528)
T ss_dssp HHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCC-HHHHTTHHHHHHHHTTCC--CHHHHHHHHHHHHHHTSS
T ss_pred HHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHcC
Confidence 99999999999999 56678899999999999999864433 344589999999999876 678999999999999852
Q ss_pred hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHHHH-----HH-
Q 015496 291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQL-----QE- 364 (405)
Q Consensus 291 ~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~~-----~~- 364 (405)
.+.....+.+.|+++.|+.+|.+++..+++.|+++|++|+.+.....+.+. ..|+.+.|..+..+- +.
T Consensus 275 -----~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~v~~~ 348 (528)
T 4b8j_A 275 -----TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCII-DHQALPCLLSLLTQNLKKSIKKE 348 (528)
T ss_dssp -----CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH-TTTHHHHHHHHHHSCCCHHHHHH
T ss_pred -----CHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHH-HhhhHHHHHHHHcCCCcHHHHHH
Confidence 344456778899999999999999999999999999999998777777777 566666655554322 11
Q ss_pred -------hhh-chhhhhhHHHHHHHHHHHHHHHhhhccccccchhcc
Q 015496 365 -------VML-EEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCWN 403 (405)
Q Consensus 365 -------l~~-~~~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~~~~~ 403 (405)
+.. +.++.++..+.+.++...+++.+.. ..+++++||.
T Consensus 349 A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~v~~~a~~a 394 (528)
T 4b8j_A 349 ACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAE-FDIKKEAAWA 394 (528)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSC-HHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCC-HHHHHHHHHH
Confidence 222 4567777778888888999988876 6899999985
No 20
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.86 E-value=5.9e-20 Score=184.20 Aligned_cols=262 Identities=17% Similarity=0.206 Sum_probs=209.8
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccC--CCCchhHHHhc-CCHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCChHh
Q 015496 133 IQIAIDDLNNSTLSLEDSQRALQELLILVE--PIDNANDLSKL-GGLSVLVGQLNHP-DTDIRKISAWILGKASQNNPLV 208 (405)
Q Consensus 133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve--~iDnA~~~~~~-Ggi~~Lv~lL~s~-~~~Ir~~Aa~~Lg~~aqNN~~~ 208 (405)
+...++.+.++ +++.+..|+..|..++. .-.....+++. |+++.|+.+|+++ ++.+|..|+++|++++.++++.
T Consensus 22 l~~l~~~l~s~--~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~ 99 (450)
T 2jdq_A 22 TSDMIEMIFSK--SPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ 99 (450)
T ss_dssp CHHHHHHHHSS--CHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 34455666544 57788999999998763 22234566777 9999999999987 8999999999999999999999
Q ss_pred HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015496 209 QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (405)
Q Consensus 209 Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~ 288 (405)
+..+++.|++|.|+++++++++.++..|+++|++++.+++..++.+++.|+++.|+.+++++ .+..+++.|++++.+|+
T Consensus 100 ~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~v~~~a~~~L~~l~ 178 (450)
T 2jdq_A 100 TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ-NRLTMTRNAVWALSNLC 178 (450)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC-CCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988999999999999999999964 36789999999999999
Q ss_pred hchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHH---HH---
Q 015496 289 KCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ---QL--- 362 (405)
Q Consensus 289 ~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~---~~--- 362 (405)
.. .++.....+. .++++.|+.+|.++|..+++.++++|.+|+....+.++.+...++++..+..|.. ..
T Consensus 179 ~~----~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~ 253 (450)
T 2jdq_A 179 RG----KSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSP 253 (450)
T ss_dssp CC----SSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHH
T ss_pred CC----CCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHH
Confidence 64 1122222333 7899999999999999999999999999998766666666634444444444431 11
Q ss_pred -----HHhhh-chhhhhhHHHHHHHHHHHHHHHhhhccccccchhcc
Q 015496 363 -----QEVML-EEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCWN 403 (405)
Q Consensus 363 -----~~l~~-~~~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~~~~~ 403 (405)
..+.. .+++++...+.+.++...+++.++. ..+++++||.
T Consensus 254 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~vr~~a~~~ 299 (450)
T 2jdq_A 254 ALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPK-ESIKKEACWT 299 (450)
T ss_dssp HHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHH
T ss_pred HHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCC-HHHHHHHHHH
Confidence 11333 4567777778889999999998887 7899999985
No 21
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.86 E-value=8.9e-21 Score=195.68 Aligned_cols=210 Identities=16% Similarity=0.160 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHHccCCCC-chhHHHhcCC-HHHHHHhcCCCCHHHHHHHHHHHHHHhcC-ChHhHHHHHHcCcHHHHHH
Q 015496 147 LEDSQRALQELLILVEPID-NANDLSKLGG-LSVLVGQLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMK 223 (405)
Q Consensus 147 ~e~k~~AL~~L~~Lve~iD-nA~~~~~~Gg-i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqN-N~~~Q~~vle~G~lp~Ll~ 223 (405)
.+-+..|...|.+++.+-+ +...+...|| +|+|+.+|.++++++|..|+|+|++++.+ ++..+..|.+.|++|+|++
T Consensus 214 ~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~ 293 (458)
T 3nmz_A 214 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME 293 (458)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHH
Confidence 4567889999999987665 4445556666 99999999999999999999999999986 7889999999999999999
Q ss_pred hh-cCCCHHHHHHHHHHHHHHhcCChhhHHHHH-hcCcHHHHHHhhcCCCcc--HHHHHHHHHHHHHHhhchhccCCCCc
Q 015496 224 MV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFY-VEAGDLMLQDILGNSSFE--IRLHRKAVSLVGDLAKCQLENMHKVE 299 (405)
Q Consensus 224 LL-~s~~~~v~~kAl~ALS~lir~~~~~~~~f~-~~gGi~~L~~lL~s~~~~--~kl~~kA~~lLs~L~~~~~~~~~~~~ 299 (405)
+| ++++..++..|+.||.|+..+++..+..+. ..||+++|+.+|.+++.. ..++.+|+|+|+||+... ..+++.
T Consensus 294 lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~--a~~~~~ 371 (458)
T 3nmz_A 294 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI--ATNEDH 371 (458)
T ss_dssp HHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHH--TTCHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcc--cCCHHH
Confidence 75 556788899999999999887777777887 799999999999876322 258999999999998410 024567
Q ss_pred chhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHH
Q 015496 300 PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 358 (405)
Q Consensus 300 ~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L 358 (405)
+..+.+.|+++.|+.+|.+++.++++.|+++|.+|+....++++.+.+.+++++++..|
T Consensus 372 ~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL 430 (458)
T 3nmz_A 372 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLI 430 (458)
T ss_dssp HHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTT
T ss_pred HHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence 88899999999999999999999999999999999976677888888555555544444
No 22
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.86 E-value=5.8e-20 Score=184.25 Aligned_cols=261 Identities=14% Similarity=0.167 Sum_probs=211.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCC-CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015496 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (405)
Q Consensus 132 lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~-iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~ 210 (405)
.+...++.+.+. .+.+.+..|+..|..++.. .++...+++.|+++.|+.+|+++++.+|..|+|+|++++.+++..+.
T Consensus 65 ~i~~L~~~L~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 65 VVARFVEFLKRK-ENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp HHHHHHHHHTCT-TCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHCCC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 455556666654 2578888999999998864 46677788899999999999999999999999999999999999999
Q ss_pred HHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCC-hhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015496 211 QVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (405)
Q Consensus 211 ~vle~G~lp~Ll~LL~s-~~~~v~~kAl~ALS~lir~~-~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~ 288 (405)
.+++.|++|.|+.++.+ ++..++..|+|+|++++++. +.....++ .++++.|+.++.++ +..++..++|++.+|+
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~--~~~v~~~a~~~L~~l~ 220 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVS--DTDVLADACWALSYLS 220 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCC--CHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccC--CHHHHHHHHHHHHHHH
Confidence 99999999999999996 57899999999999999876 43333333 78999999999876 6789999999999998
Q ss_pred hchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHH----HHHH
Q 015496 289 KCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ----QLQE 364 (405)
Q Consensus 289 ~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~----~~~~ 364 (405)
.. .++....+.+.|+++.|+.+|.+++..+++.++++|.+|+...+...+.+. ..|+.+.|..+.. ..+.
T Consensus 221 ~~-----~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~~vr~ 294 (450)
T 2jdq_A 221 DG-----PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVIL-NCSALQSLLHLLSSPKESIKK 294 (450)
T ss_dssp SS-----SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH-TTTHHHHHHHHTTCSSHHHHH
T ss_pred CC-----CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHH-HCccHHHHHHHHcCCCHHHHH
Confidence 53 334556677889999999999999999999999999999988776666666 4566565555542 1111
Q ss_pred --------hhh-chhhhhhHHHHHHHHHHHHHHHhhhccccccchhcc
Q 015496 365 --------VML-EEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCWN 403 (405)
Q Consensus 365 --------l~~-~~~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~~~~~ 403 (405)
+.. +.++.+...+.+.++...+++.++. ..+++++||.
T Consensus 295 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~-~~v~~~a~~~ 341 (450)
T 2jdq_A 295 EACWTISNITAGNRAQIQTVIDANIFPALISILQTAE-FRTRKEAAWA 341 (450)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSC-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC-HHHHHHHHHH
Confidence 222 4556677777788888899988877 6899999995
No 23
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.85 E-value=2.9e-20 Score=191.00 Aligned_cols=175 Identities=15% Similarity=0.194 Sum_probs=152.9
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 015496 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (405)
Q Consensus 175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f 254 (405)
.+|.|+.+|+++++++|..|+++|++++.+|+.++..+.+.|++|.|+++|+++++.++..|+|||.|++.++++....+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred HhcCcHHHHHHhhc-CCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhcc--------C-------
Q 015496 255 YVEAGDLMLQDILG-NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA--------S------- 318 (405)
Q Consensus 255 ~~~gGi~~L~~lL~-s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~--------~------- 318 (405)
+++||+++|+.+|+ ++ +..++..|+|+|.||+. +++.+..+.+ |.++.|+.+|. +
T Consensus 83 ~~~G~i~~Lv~lL~~~~--~~~~~~~a~~aL~nLa~------~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e 153 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTG--NAEIQKQLTGLLWNLSS------TDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSRE 153 (457)
T ss_dssp HHTTCHHHHHHHHTTCC--CHHHHHHHHHHHHHHHT------SSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------
T ss_pred HHcCCHHHHHHHHhhCC--CHHHHHHHHHHHHHHhc------CHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcc
Confidence 99999999999998 54 67899999999999995 3567777888 99999999993 2
Q ss_pred -CChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHH-HHH
Q 015496 319 -ADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALE-RLR 359 (405)
Q Consensus 319 -~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~-~L~ 359 (405)
.+.+++..|+++|.+|+.. ++.++.+.+..|+.+.|. .|+
T Consensus 154 ~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~ 195 (457)
T 1xm9_A 154 VVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQ 195 (457)
T ss_dssp CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHH
Confidence 2566777999999999987 678888884415544444 444
No 24
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.85 E-value=6.8e-20 Score=190.03 Aligned_cols=261 Identities=15% Similarity=0.181 Sum_probs=213.9
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC-CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015496 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (405)
Q Consensus 133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i-DnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~ 211 (405)
+...++.|.++ .+.+.+..|+..|..++... ++...++..|++++|+.+|.++++.+|..|+|+|++++.+++..+..
T Consensus 132 i~~Lv~~L~~~-~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~ 210 (530)
T 1wa5_B 132 VPRLVEFMREN-QPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 210 (530)
T ss_dssp HHHHHHTTSTT-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHH
Confidence 44455555543 25678889999999998754 56778888999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhch
Q 015496 212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 291 (405)
Q Consensus 212 vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~ 291 (405)
+++.|++|.|+.++.+++..++..|+|+|++++++..+....+...|+++.|+.+|.++ +..++..|+++|.+|+..
T Consensus 211 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~~- 287 (530)
T 1wa5_B 211 VLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM--DTETLVDACWAISYLSDG- 287 (530)
T ss_dssp HHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC--CHHHHHHHHHHHHHHHSS-
T ss_pred HHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC--CHHHHHHHHHHHHHHhCC-
Confidence 99999999999999998889999999999999998644445666789999999999876 678999999999999952
Q ss_pred hccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHHH----HHH---
Q 015496 292 LENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQ----LQE--- 364 (405)
Q Consensus 292 ~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~----~~~--- 364 (405)
.++....+.+.|+++.|+.+|.+++..+++.++++|.+|+.+.+...+.+. ..|+.+.|..+... .+.
T Consensus 288 ----~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~vr~~A~ 362 (530)
T 1wa5_B 288 ----PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVI-NAGVLPALRLLLSSPKENIKKEAC 362 (530)
T ss_dssp ----CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred ----CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHH-HcchHHHHHHHHcCCCHHHHHHHH
Confidence 344566778889999999999999999999999999999988777777776 45665555555421 111
Q ss_pred -----hhh-chhhhhhHHHHHHHHHHHHHHHhhhccccccchhcc
Q 015496 365 -----VML-EEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCWN 403 (405)
Q Consensus 365 -----l~~-~~~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~~~~~ 403 (405)
+.. +.++.++..+.+.++...+++.++. ..+++++||.
T Consensus 363 ~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~a 406 (530)
T 1wa5_B 363 WTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE-YKTKKEACWA 406 (530)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSC-HHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC-HHHHHHHHHH
Confidence 222 4557777777788888888888776 6899999985
No 25
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.84 E-value=3.1e-20 Score=202.74 Aligned_cols=261 Identities=11% Similarity=0.009 Sum_probs=204.8
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCC------------------------------c---hhHHHhcCCHH
Q 015496 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPID------------------------------N---ANDLSKLGGLS 177 (405)
Q Consensus 131 ~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iD------------------------------n---A~~~~~~Ggi~ 177 (405)
..+...++.+.+. +..-...|+..|.+++...| + ...+++.|++|
T Consensus 421 g~Ip~LV~LL~s~--d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp 498 (810)
T 3now_A 421 ASIHALMDLARGG--NQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITT 498 (810)
T ss_dssp HHHHHHHHHHHTT--CGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred chHHHHHHHhCCC--ChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHH
Confidence 3455566666653 33456677777777776432 1 15678899999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH---
Q 015496 178 VLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF--- 254 (405)
Q Consensus 178 ~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f--- 254 (405)
+|+.+|+++++.+|+.|+|+|+|++. +++++..+++.|++|+|+.+|.++++..+..|.|||++++.+..+. ..|
T Consensus 499 ~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~-~~~~~~ 576 (810)
T 3now_A 499 ALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPE-VSFSGQ 576 (810)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHH-HHTTTH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChh-hhhcch
Confidence 99999999999999999999999996 5789999999999999999999999999999999999999864332 222
Q ss_pred HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHH
Q 015496 255 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334 (405)
Q Consensus 255 ~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L 334 (405)
...|++++|+.+|.++ .+...+..|+++|+||+.. +++.+..+++.|+++.|+.+|.+++..+++.|+++|++|
T Consensus 577 ~~~~aIppLv~LL~~~-~~~l~~~eAl~AL~NLa~~-----~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NL 650 (810)
T 3now_A 577 RSLDVIRPLLNLLQQD-CTALENFESLMALTNLASM-----NESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNL 650 (810)
T ss_dssp HHHHTHHHHHHTTSTT-SCHHHHHHHHHHHHHHTTS-----CHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHH
T ss_pred hhhcHHHHHHHHhCCC-CcHHHHHHHHHHHHHHhcC-----CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 1257999999999865 2444566899999999953 456777889999999999999999999999999999999
Q ss_pred hcCChhhHHHHHhcCCchHHHHHHHHH----HHH--------hhh-chhhhhhHHH-HHHHHHHHHHHHhhhccccccch
Q 015496 335 LQLRTTEALVLKDFCGLDTALERLRQQ----LQE--------VML-EEDQRDYAMD-VEALRREVELIFFRKLGKVGTRL 400 (405)
Q Consensus 335 ~~~~~~~~~~v~~~~Gl~~~L~~L~~~----~~~--------l~~-~~~q~~~~~d-~~~l~~e~~~~~~~kl~~i~~~~ 400 (405)
+.+++ .+..+....|..+.|..|... .+. +.. ++.|.+++.+ .+.++..++++.++- .++++++
T Consensus 651 a~~~~-~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d-~~vq~~A 728 (810)
T 3now_A 651 VMSED-VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPS-PAVQHRG 728 (810)
T ss_dssp TTSHH-HHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSS-HHHHHHH
T ss_pred hCChH-HHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCC-HHHHHHH
Confidence 98754 555555346776666666521 221 222 4668888888 789999999998877 7999999
Q ss_pred hcc
Q 015496 401 CWN 403 (405)
Q Consensus 401 ~~~ 403 (405)
||.
T Consensus 729 ~~a 731 (810)
T 3now_A 729 IVI 731 (810)
T ss_dssp HHH
T ss_pred HHH
Confidence 995
No 26
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.83 E-value=1.5e-19 Score=170.90 Aligned_cols=178 Identities=14% Similarity=0.147 Sum_probs=152.9
Q ss_pred CHHHHHHhcCCCCH--HHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHH
Q 015496 175 GLSVLVGQLNHPDT--DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE 252 (405)
Q Consensus 175 gi~~Lv~lL~s~~~--~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~ 252 (405)
.+|++|++|+++++ .+|..|+++|.+++.+|+..+..|.+.|+||+|+++|+++++.++..|+|||.|+..+++.+..
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 58999999999887 9999999999999999999999999999999999999999999999999999999998899999
Q ss_pred HHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhcc---------------
Q 015496 253 MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA--------------- 317 (405)
Q Consensus 253 ~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~--------------- 317 (405)
.+.++||+++|+++|++. .+..+++.|+.+|.+|+. .++.+..+.+. .++.|++++.
T Consensus 89 ~I~~~GaI~~Lv~lL~~~-~~~~~~e~a~~aL~nLS~------~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~ 160 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQT-RDLETKKQITGLLWNLSS------NDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKAN 160 (233)
T ss_dssp HHHHTTHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHT------SGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCC
T ss_pred HHHHcCCHHHHHHHHccC-CCHHHHHHHHHHHHHHHc------ChhhHHHHHhc-cHHHHHHHHhccccCCccccccccc
Confidence 999999999999999843 256789999999999984 34556667664 5889988763
Q ss_pred -CCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCc-hHHHHHHHH
Q 015496 318 -SADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL-DTALERLRQ 360 (405)
Q Consensus 318 -~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl-~~~L~~L~~ 360 (405)
..|.++++.|..+|.+|+..+++.|+.+++..|+ ++++..|+.
T Consensus 161 ~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~ 205 (233)
T 3tt9_A 161 GLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRG 205 (233)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHh
Confidence 1377999999999999998777889999866676 444444443
No 27
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.83 E-value=5.4e-19 Score=181.12 Aligned_cols=264 Identities=15% Similarity=0.150 Sum_probs=201.8
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015496 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (405)
Q Consensus 132 lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~ 211 (405)
.+...++.|.+. .+.+.+..|+..|..+..+.++...+.+.|++++|+.+|+++++.+|..|+++|++++.+++..+..
T Consensus 60 ~i~~Lv~~L~~~-~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 138 (529)
T 1jdh_A 60 MVSAIVRTMQNT-NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 138 (529)
T ss_dssp HHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred hHHHHHHHHhcC-CCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHH
Confidence 445556666654 3678888999999999888889999999999999999999999999999999999999998889999
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhch
Q 015496 212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 291 (405)
Q Consensus 212 vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~ 291 (405)
+.+.|++|.|++++.+++..++..++.+|++++.+++..+..+.+.||++.|+.+|+++. +...+..++.++.+|+.+
T Consensus 139 i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~- 216 (529)
T 1jdh_A 139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVC- 216 (529)
T ss_dssp HHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTS-
T ss_pred HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC-hHHHHHHHHHHHHHHhcC-
Confidence 999999999999999988899999999999999999999999999999999999887542 233333344444444321
Q ss_pred hccCCCCcchhHHh---------------------------------------CCcHHHHHHhccCCChHHHHHHHHHHH
Q 015496 292 LENMHKVEPPLFRD---------------------------------------RFFLKSVVDLTASADLDLQEKALAAIK 332 (405)
Q Consensus 292 ~~~~~~~~~~~l~~---------------------------------------~g~l~~Lv~LL~~~D~~v~E~al~aL~ 332 (405)
++.+..+.+ .++++.|+.+|.++|.++++.++++|.
T Consensus 217 -----~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 291 (529)
T 1jdh_A 217 -----SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS 291 (529)
T ss_dssp -----TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred -----cccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 112222222 256777788888889999999999999
Q ss_pred HHhcCChhhHHHHHhcCCchHHHHHHHHH-----HHH--------hhhc----hhhhhhHHHHHHHHHHHHHHHhhhccc
Q 015496 333 NLLQLRTTEALVLKDFCGLDTALERLRQQ-----LQE--------VMLE----EDQRDYAMDVEALRREVELIFFRKLGK 395 (405)
Q Consensus 333 ~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~-----~~~--------l~~~----~~q~~~~~d~~~l~~e~~~~~~~kl~~ 395 (405)
+|+..+.+.++.+.+.+|++..+..|... .+. +... +.-+..+.+.+.++....++.+++-..
T Consensus 292 ~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~ 371 (529)
T 1jdh_A 292 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP 371 (529)
T ss_dssp HHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHH
T ss_pred HHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchH
Confidence 99987766778887566666655555431 111 1111 112345667788888899998887238
Q ss_pred cccchhcc
Q 015496 396 VGTRLCWN 403 (405)
Q Consensus 396 i~~~~~~~ 403 (405)
+++++||+
T Consensus 372 v~~~a~~~ 379 (529)
T 1jdh_A 372 LIKATVGL 379 (529)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999996
No 28
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.83 E-value=2.4e-19 Score=175.07 Aligned_cols=205 Identities=14% Similarity=0.012 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHh
Q 015496 188 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK-MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDI 266 (405)
Q Consensus 188 ~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~-LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~l 266 (405)
.+-|..|+..|..++.+ .+....+.+.|++|+|+. +|+++++.++..|+|+|++++.+++..++.+++.||+++|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 46789999999999985 567888999999999999 9999999999999999999999999999999999999999999
Q ss_pred hcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 015496 267 LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLK 346 (405)
Q Consensus 267 L~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~ 346 (405)
|+++ .+..++++|+|+|++|+++ ++.....|.+.|+++.|+.+|.++|..++..|+++|.+|+.++.+.++.+.
T Consensus 133 L~~~-~~~~v~~~A~~ALsnl~~~-----~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv 206 (296)
T 1xqr_A 133 LDRD-ACDTVRVKALFAISCLVRE-----QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLC 206 (296)
T ss_dssp HHHC-SCHHHHHHHHHHHHHHHTT-----CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HccC-CCHHHHHHHHHHHHHHHcC-----CcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 9864 2577999999999999963 344556788899999999999999999999999999999988777888888
Q ss_pred hcCCchHHHHHHHHH----H-----HHhhh-chhhhhhHHHHHHHH-HHHHHHHhhhccccc-cchh
Q 015496 347 DFCGLDTALERLRQQ----L-----QEVML-EEDQRDYAMDVEALR-REVELIFFRKLGKVG-TRLC 401 (405)
Q Consensus 347 ~~~Gl~~~L~~L~~~----~-----~~l~~-~~~q~~~~~d~~~l~-~e~~~~~~~kl~~i~-~~~~ 401 (405)
..|+.+.|..|... + +.+-. -..+++...++...+ ...+++.+.+ ++++ ||+|
T Consensus 207 -~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~-~~lq~~e~~ 271 (296)
T 1xqr_A 207 -SMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRC-QLLQQHEEY 271 (296)
T ss_dssp -HTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHH-HHHTTCGGG
T ss_pred -HcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHH-HHccchHHH
Confidence 55665555555421 1 11211 112444444555442 3455565555 7777 7765
No 29
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.82 E-value=1.1e-19 Score=192.16 Aligned_cols=266 Identities=15% Similarity=0.108 Sum_probs=197.0
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcC-ChHhHH
Q 015496 133 IQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQN-NPLVQK 210 (405)
Q Consensus 133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve-~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqN-N~~~Q~ 210 (405)
+...++.|.+. +++.+..|...|..++. +.++...+.+.||||+||.+|+++++++|+.|+|+|++++.+ |++++.
T Consensus 50 i~~LV~~L~s~--~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 50 LPEVIAMLGFR--LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp HHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred HHHHHHHHCCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 45556777654 57888889999999884 678889999999999999999999999999999999999996 799999
Q ss_pred HHHHcCcHHHHHHhhcC-CCHHHHH-------------------------------------------------------
Q 015496 211 QVLELGALSKLMKMVKS-SFVEEAV------------------------------------------------------- 234 (405)
Q Consensus 211 ~vle~G~lp~Ll~LL~s-~~~~v~~------------------------------------------------------- 234 (405)
.|+++|+||+|+++|++ .+.+++.
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~ 207 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWES 207 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHH
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHH
Confidence 99999999999999986 3444333
Q ss_pred ---HHHHHHHHHhcCChhhHHHHHhcCc-HHHHHHhhcC----CCccHHHHHHHHHHHHHHhhchh-ccC----------
Q 015496 235 ---KALYTVSSLIRNNLAGQEMFYVEAG-DLMLQDILGN----SSFEIRLHRKAVSLVGDLAKCQL-ENM---------- 295 (405)
Q Consensus 235 ---kAl~ALS~lir~~~~~~~~f~~~gG-i~~L~~lL~s----~~~~~kl~~kA~~lLs~L~~~~~-~~~---------- 295 (405)
.|.++|.|++.+++..++.+++++| ++.|+.++++ ...+.+.+..|+++|.||+.... +.+
T Consensus 208 V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~ 287 (584)
T 3l6x_A 208 VLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAP 287 (584)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcc
Confidence 3455555565555566677777655 4577777653 11244567777888877765310 000
Q ss_pred ----------------------------------CC----------------------CcchhHHhCCcHHHHHHhccCC
Q 015496 296 ----------------------------------HK----------------------VEPPLFRDRFFLKSVVDLTASA 319 (405)
Q Consensus 296 ----------------------------------~~----------------------~~~~~l~~~g~l~~Lv~LL~~~ 319 (405)
++ ..+..+.+.+.++.|++||.++
T Consensus 288 ~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~ 367 (584)
T 3l6x_A 288 NVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE 367 (584)
T ss_dssp --------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCS
T ss_pred cccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCC
Confidence 00 0111334468899999999999
Q ss_pred ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHHH-------------------HHHhhh-chhhhhhHHHHH
Q 015496 320 DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQ-------------------LQEVML-EEDQRDYAMDVE 379 (405)
Q Consensus 320 D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~-------------------~~~l~~-~~~q~~~~~d~~ 379 (405)
+..+++.|+++|.+|+.+.. .+..+. .+|+++++..|... +..+++ +.+|++.+.+.+
T Consensus 368 ~~~v~~~A~~aL~nLs~~~~-~~~~I~-~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g 445 (584)
T 3l6x_A 368 HERVVKAASGALRNLAVDAR-NKELIG-KHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQ 445 (584)
T ss_dssp CHHHHHHHHHHHHHHHTTCS-CHHHHH-HHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhCChh-HHHHHH-hCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCC
Confidence 99999999999999998865 445554 66665555544421 112444 688999999999
Q ss_pred HHHHHHHHHHhh--hccccccchhcc
Q 015496 380 ALRREVELIFFR--KLGKVGTRLCWN 403 (405)
Q Consensus 380 ~l~~e~~~~~~~--kl~~i~~~~~~~ 403 (405)
.++..++++.+. + +++.|.|||.
T Consensus 446 ~I~~Lv~LL~s~~~~-~~v~k~Aa~v 470 (584)
T 3l6x_A 446 GIEKLVLINKSGNRS-EKEVRAAALV 470 (584)
T ss_dssp HHHHHHHHHTCSSSC-HHHHHHHHHH
T ss_pred ChHHHHHHHhCCCCC-hHHHHHHHHH
Confidence 999999999875 5 7899999984
No 30
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.82 E-value=1.4e-18 Score=184.99 Aligned_cols=265 Identities=15% Similarity=0.125 Sum_probs=209.2
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015496 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (405)
Q Consensus 131 ~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~ 210 (405)
..+...++.|.+. .+.+.+..|+..|..+..+.++...+.+.|++++|+.+|+++++.+|..|+++|++++.+++..+.
T Consensus 56 ~~i~~Lv~~L~~~-~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~ 134 (644)
T 2z6h_A 56 QMVSAIVRTMQNT-NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 134 (644)
T ss_dssp HHHHHHHHHHHSC-CCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred ChHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHH
Confidence 3455666777654 367888899999999988888899999999999999999999999999999999999999888999
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (405)
Q Consensus 211 ~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~ 290 (405)
.+.+.|++|.|+++|++++..++..++.+|++++.+++..+..+.+.||++.|+.+|++. ....++..++.++.+|+.
T Consensus 135 ~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~~~~~~a~~~L~nLs~- 212 (644)
T 2z6h_A 135 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY-TYEKLLWTTSRVLKVLSV- 212 (644)
T ss_dssp HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTC-CCHHHHHHHHHHHHHHTT-
T ss_pred HHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcC-ChHHHHHHHHHHHHHHhc-
Confidence 999999999999999998888888889999999988899999999999999999999976 356778889999999874
Q ss_pred hhccCCCCcchhHHhCCcHHH---------------------------------------HHHhccCCChHHHHHHHHHH
Q 015496 291 QLENMHKVEPPLFRDRFFLKS---------------------------------------VVDLTASADLDLQEKALAAI 331 (405)
Q Consensus 291 ~~~~~~~~~~~~l~~~g~l~~---------------------------------------Lv~LL~~~D~~v~E~al~aL 331 (405)
.++.+..+.+.|+++. |+.+|.++|.++++.++++|
T Consensus 213 -----~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL 287 (644)
T 2z6h_A 213 -----CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL 287 (644)
T ss_dssp -----CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred -----CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3344555555555544 45556667888899999999
Q ss_pred HHHhcCChhhHHHHHhcCCchHHHHHHHHH-----HHH--------hhh---chhhhhh-HHHHHHHHHHHHHHHhhhcc
Q 015496 332 KNLLQLRTTEALVLKDFCGLDTALERLRQQ-----LQE--------VML---EEDQRDY-AMDVEALRREVELIFFRKLG 394 (405)
Q Consensus 332 ~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~-----~~~--------l~~---~~~q~~~-~~d~~~l~~e~~~~~~~kl~ 394 (405)
.+|+..+...++.+.+.+|+...+..|... .+. +.. ++.+.+. +.+.+.++...+++.+++-.
T Consensus 288 ~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~ 367 (644)
T 2z6h_A 288 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 367 (644)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCH
T ss_pred HHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCch
Confidence 999887666777777455555555555431 111 111 1123333 55678899999999888634
Q ss_pred ccccchhcc
Q 015496 395 KVGTRLCWN 403 (405)
Q Consensus 395 ~i~~~~~~~ 403 (405)
.+++++||+
T Consensus 368 ~v~~~a~~~ 376 (644)
T 2z6h_A 368 PLIKATVGL 376 (644)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 899999996
No 31
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.80 E-value=5.9e-19 Score=166.84 Aligned_cols=197 Identities=13% Similarity=0.141 Sum_probs=161.5
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcc-CCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015496 133 IQIAIDDLNNSTLSLEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (405)
Q Consensus 133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lv-e~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~ 211 (405)
+..+++.|.+++...+.+..|...|..++ .+.++...+...||+|+||++|+++++++|+.|+|+|.+++.+|++++..
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 34456677766544566777888888887 45678889999999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhc---C-----------CCccHHH
Q 015496 212 VLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG---N-----------SSFEIRL 276 (405)
Q Consensus 212 vle~G~lp~Ll~LL~-s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~---s-----------~~~~~kl 276 (405)
|.+.|+||+|+++|+ +++.++++.|..+|-++.. ++.....+.+ +|+++|+.++. + ...+..+
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-NDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-ChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHHH
Confidence 999999999999998 5678888888877777754 4556666665 58999998763 0 1136789
Q ss_pred HHHHHHHHHHHhhchhccCCCCcchhHHhC-CcHHHHHHhccC------CChHHHHHHHHHHHHHhc
Q 015496 277 HRKAVSLVGDLAKCQLENMHKVEPPLFRDR-FFLKSVVDLTAS------ADLDLQEKALAAIKNLLQ 336 (405)
Q Consensus 277 ~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~-g~l~~Lv~LL~~------~D~~v~E~al~aL~~L~~ 336 (405)
+.+|+.+|.||+. .+++.+..+++. |+++.|+.+++. .|...+|.++.+|.+|+-
T Consensus 168 ~~na~~~L~nLss-----~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 168 FYNVTGCLRNMSS-----AGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHHTT-----SCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 9999999999985 355788889876 889999999875 266899999999999974
No 32
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.79 E-value=5.5e-18 Score=179.33 Aligned_cols=179 Identities=15% Similarity=0.116 Sum_probs=156.1
Q ss_pred hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-Chhh
Q 015496 172 KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN-NLAG 250 (405)
Q Consensus 172 ~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~-~~~~ 250 (405)
..+++++||.+|.++++++|+.|+++|.+++.+++..+..|.+.|+||+|+++|++++..++..|+|||.||+.+ ++.+
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence 457899999999999999999999999999999999999999999999999999999999999999999999986 6899
Q ss_pred HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhcc-------------
Q 015496 251 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA------------- 317 (405)
Q Consensus 251 ~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~------------- 317 (405)
+..++++||+++|+.+|++. .+..+++.|+++|.+|+. +++.+..+.+ +.++.|+++|.
T Consensus 126 k~~I~~~GaIp~LV~LL~s~-~~~~~~e~aa~aL~nLS~------~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~ 197 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKA-RDMDLTEVITGTLWNLSS------HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNED 197 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHC-CSHHHHHHHHHHHHHHTT------SGGGHHHHHH-HTHHHHHHHTHHHHHCCC------
T ss_pred HHHHHHcCCHHHHHHHHcCC-CCHHHHHHHHHHHHHHhC------CchhhHHHHh-ccHHHHHHHHhccccccccccccc
Confidence 99999999999999999974 256789999999999984 3456667775 56999999871
Q ss_pred -----CCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHH
Q 015496 318 -----SADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 358 (405)
Q Consensus 318 -----~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L 358 (405)
..|.++++.|..+|.+|+..+++.++.+++..|+.+.|..+
T Consensus 198 ~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~ 243 (584)
T 3l6x_A 198 CKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFI 243 (584)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHH
Confidence 23689999999999999998777788888677775444443
No 33
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.78 E-value=1.3e-17 Score=182.25 Aligned_cols=264 Identities=15% Similarity=0.152 Sum_probs=202.8
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015496 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (405)
Q Consensus 132 lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~ 211 (405)
.+...++.|.+. .+.+.+..|+..|..+....++...+.+.|++++|+.+|+++++.+|..|+++|++++.+++..+..
T Consensus 193 ~i~~Lv~~L~~~-~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~ 271 (780)
T 2z6g_A 193 MVSAIVRTMQNT-NDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMA 271 (780)
T ss_dssp HHHHHHHHHHHC-CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred hHHHHHHHHcCC-CCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHH
Confidence 344445555544 3678899999999998888888889999999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhch
Q 015496 212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 291 (405)
Q Consensus 212 vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~ 291 (405)
+.+.|++|.|++++.+++..++..++.+|.+++.+++..+..+.+.||++.|+.+++++. +...+..++.++.+|+..
T Consensus 272 v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~-~~~~~~~a~~aL~~Ls~~- 349 (780)
T 2z6g_A 272 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVC- 349 (780)
T ss_dssp HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTS-
T ss_pred HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhhcC-
Confidence 999999999999999988889999999999999888999999999999999999998763 334444555555555531
Q ss_pred hccCCCCcchhHHh---------------------------------------CCcHHHHHHhccCCChHHHHHHHHHHH
Q 015496 292 LENMHKVEPPLFRD---------------------------------------RFFLKSVVDLTASADLDLQEKALAAIK 332 (405)
Q Consensus 292 ~~~~~~~~~~~l~~---------------------------------------~g~l~~Lv~LL~~~D~~v~E~al~aL~ 332 (405)
+..+..+.+ .++++.|+.+|.+.|.++++.|+++|.
T Consensus 350 -----~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~ 424 (780)
T 2z6g_A 350 -----SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS 424 (780)
T ss_dssp -----TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 111222222 356777788888889999999999999
Q ss_pred HHhcCChhhHHHHHhcCCchHHHHHHHH-----HHHH--------hhhchhh----hhhHHHHHHHHHHHHHHHhhhccc
Q 015496 333 NLLQLRTTEALVLKDFCGLDTALERLRQ-----QLQE--------VMLEEDQ----RDYAMDVEALRREVELIFFRKLGK 395 (405)
Q Consensus 333 ~L~~~~~~~~~~v~~~~Gl~~~L~~L~~-----~~~~--------l~~~~~q----~~~~~d~~~l~~e~~~~~~~kl~~ 395 (405)
+|+..+...++.+.+.+|+...+..|.. ..+. +.....+ +..+.+.+.++....++.+++-..
T Consensus 425 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~ 504 (780)
T 2z6g_A 425 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWP 504 (780)
T ss_dssp HHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHH
T ss_pred HHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHH
Confidence 9998877777778755666666666653 1111 1111111 234556677888888888887238
Q ss_pred cccchhcc
Q 015496 396 VGTRLCWN 403 (405)
Q Consensus 396 i~~~~~~~ 403 (405)
+++++||+
T Consensus 505 v~~~A~~a 512 (780)
T 2z6g_A 505 LIKATVGL 512 (780)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999995
No 34
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.74 E-value=9.2e-17 Score=164.49 Aligned_cols=216 Identities=18% Similarity=0.156 Sum_probs=173.6
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHH
Q 015496 134 QIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVL 213 (405)
Q Consensus 134 k~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vl 213 (405)
...+..+.+.+ ....+..+...|..+....++...+.+.|++++|+.++.++++.++..|+|+|++++.+.+... .
T Consensus 188 ~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~ 263 (529)
T 1jdh_A 188 QALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---G 263 (529)
T ss_dssp HHHHHHHHHCC-CHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---C
T ss_pred HHHHHHHHhCC-hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---H
Confidence 34445555543 3445556777788888788888999999999999999999999999999999999998765422 1
Q ss_pred HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhc
Q 015496 214 ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE 293 (405)
Q Consensus 214 e~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~ 293 (405)
..|++|.|++++.++++.++..|+++|++++.+++..+..+.+.||++.|+.+|.+++.+..++..|+++|.+|+..
T Consensus 264 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~--- 340 (529)
T 1jdh_A 264 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR--- 340 (529)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS---
T ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC---
Confidence 24889999999999999999999999999999988899999999999999999976323467999999999999853
Q ss_pred cCCCC---cchhHHhCCcHHHHHHhccCCC-hHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHH
Q 015496 294 NMHKV---EPPLFRDRFFLKSVVDLTASAD-LDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 359 (405)
Q Consensus 294 ~~~~~---~~~~l~~~g~l~~Lv~LL~~~D-~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~ 359 (405)
+++ .+..+.+.|.++.|+.+|.+++ ..+++.++++|.+++.++. .++.+.+.+++++.+..|+
T Consensus 341 --~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~i~~L~~ll~ 407 (529)
T 1jdh_A 341 --HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLV 407 (529)
T ss_dssp --STTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHH
T ss_pred --CchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcCCHHHHHHHHH
Confidence 222 3567888999999999999886 5999999999999998654 4566663444444444444
No 35
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.73 E-value=1.9e-16 Score=168.47 Aligned_cols=259 Identities=18% Similarity=0.170 Sum_probs=189.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHH--------------------------------
Q 015496 134 QIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVG-------------------------------- 181 (405)
Q Consensus 134 k~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~-------------------------------- 181 (405)
...+..+.+.. ..+.+..++..|..+....++...+++.|++++|+.
T Consensus 185 ~~Lv~lL~~~~-~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~ 263 (644)
T 2z6h_A 185 QALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEG 263 (644)
T ss_dssp HHHHHHHTTCC-CHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHH
T ss_pred HHHHHHHHcCC-hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhh
Confidence 34445555442 334455566666666666667777777776666655
Q ss_pred -------hcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCh---h
Q 015496 182 -------QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNL---A 249 (405)
Q Consensus 182 -------lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~--~~~v~~kAl~ALS~lir~~~---~ 249 (405)
+|+++++++|..|+|+|++++.+++..++.+++.|+++.|+.++.+. .+.++..|+++|++++.+++ .
T Consensus 264 ~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~ 343 (644)
T 2z6h_A 264 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEM 343 (644)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHH
Confidence 45557788999999999999999999999999999999999999863 37899999999999998655 3
Q ss_pred hHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC----------
Q 015496 250 GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA---------- 319 (405)
Q Consensus 250 ~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~---------- 319 (405)
.+..++..||++.|+.+|+++ .+..+++.|+|+|+||+.+ +..+..+.+.|+++.|+++|.+.
T Consensus 344 ~q~~v~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nLa~~------~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~ 416 (644)
T 2z6h_A 344 AQNAVRLHYGLPVVVKLLHPP-SHWPLIKATVGLIRNLALC------PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 416 (644)
T ss_dssp HHHHHHHTTHHHHHHHTTSTT-CCHHHHHHHHHHHHHHTTS------GGGHHHHHHTTHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHccChHHHHHHhCcc-CchHHHHHHHHHHHHHccC------HHHHHHHHHcCCHHHHHHHHhccchhhhhHhhh
Confidence 466688999999999999986 3467899999999999853 34557888999999999998763
Q ss_pred ------------ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHHH---HHH--------hhhchhhhhhHH
Q 015496 320 ------------DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQ---LQE--------VMLEEDQRDYAM 376 (405)
Q Consensus 320 ------------D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~---~~~--------l~~~~~q~~~~~ 376 (405)
+.++++.++.+|.+|+... ..+..+.+.+++++.+..|... .+. +..+.+.+....
T Consensus 417 al~n~~~~~~~~~~~v~~~a~~aL~~La~~~-~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~ 495 (644)
T 2z6h_A 417 GGTQQQFVEGVRMEEIVEGCTGALHILARDV-HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIE 495 (644)
T ss_dssp -------CCSSCHHHHHHHHHHHHHHHTTSH-HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred ccccchhcccccHHHHHHHHHHHHHHHhcCH-HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 3567888999999999764 5677777456665555555421 111 222333455555
Q ss_pred HHHHHHHHHHHHHhhhccccccchhc
Q 015496 377 DVEALRREVELIFFRKLGKVGTRLCW 402 (405)
Q Consensus 377 d~~~l~~e~~~~~~~kl~~i~~~~~~ 402 (405)
+.+.++...+++.++- ..|++-++|
T Consensus 496 ~~g~l~~L~~ll~~~~-~~vr~~A~~ 520 (644)
T 2z6h_A 496 AEGATAPLTELLHSRN-EGVATYAAA 520 (644)
T ss_dssp HTTCHHHHHHHTTCSC-HHHHHHHHH
T ss_pred HcCChhHHHHHHcCCC-HHHHHHHHH
Confidence 6666777777766665 567666665
No 36
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.67 E-value=1.1e-15 Score=166.95 Aligned_cols=221 Identities=19% Similarity=0.215 Sum_probs=168.1
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChh--
Q 015496 174 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNLA-- 249 (405)
Q Consensus 174 Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~--~~~v~~kAl~ALS~lir~~~~-- 249 (405)
|+++.|+.+|+++++.+|..|+|+|++++.+++..++.+++.|+++.|+++|.+. .+.++..|+++|++|+.+++.
T Consensus 399 ~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~ 478 (780)
T 2z6g_A 399 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAE 478 (780)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHH
Confidence 4566666777778899999999999999999999999999999999999999763 358999999999999887655
Q ss_pred -hHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCC--------
Q 015496 250 -GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASAD-------- 320 (405)
Q Consensus 250 -~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D-------- 320 (405)
.+..+...||++.|+.+|.++ .+..++..|+|+|+||+.+ +.....+.+.|+++.|+++|.+.+
T Consensus 479 ~~~~~v~~~~~l~~L~~lL~~~-~~~~v~~~A~~aL~nLa~~------~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa 551 (780)
T 2z6g_A 479 MAQNAVRLHYGLPVVVKLLHPP-SHWPLIKATVGLIRNLALC------PANHAPLREQGAIPRLVQLLVRAHQDTQRRTS 551 (780)
T ss_dssp HHHHHHHHTTCHHHHHHTTSTT-CCHHHHHHHHHHHHHHHSS------HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHhcCC-ChHHHHHHHHHHHHHHhcC------HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHh
Confidence 356888999999999999986 3457999999999999853 334567889999999999987543
Q ss_pred --------------hHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHH---HHH--------HhhhchhhhhhH
Q 015496 321 --------------LDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ---QLQ--------EVMLEEDQRDYA 375 (405)
Q Consensus 321 --------------~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~---~~~--------~l~~~~~q~~~~ 375 (405)
.++++.++.+|.+|+.. ...+..+.+.+++++++..|.. ..+ .+..+...+...
T Consensus 552 ~al~nq~~~~~~~~~~v~~~a~~aL~~La~~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i 630 (780)
T 2z6g_A 552 MGGTQQQFVEGVRMEEIVEACTGALHILARD-IHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAI 630 (780)
T ss_dssp ------CCSTTCCHHHHHHHHHHHHHHHTTS-HHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred hccccchhhcccChHHHHHHHHHHHHHHhcC-hhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 45788899999999865 4566777756666555555542 111 122233344555
Q ss_pred HHHHHHHHHHHHHHhhhccccccchhcc
Q 015496 376 MDVEALRREVELIFFRKLGKVGTRLCWN 403 (405)
Q Consensus 376 ~d~~~l~~e~~~~~~~kl~~i~~~~~~~ 403 (405)
.+.+.++....++.++- ..+++.++|.
T Consensus 631 ~~~g~i~~L~~Ll~~~~-~~Vr~~A~~a 657 (780)
T 2z6g_A 631 EAEGATAPLTELLHSRN-EGVATYAAAV 657 (780)
T ss_dssp HHTTCHHHHHHGGGCSC-HHHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCCC-HHHHHHHHHH
Confidence 56666777777777666 6777776663
No 37
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.47 E-value=4.2e-13 Score=144.96 Aligned_cols=217 Identities=14% Similarity=0.185 Sum_probs=162.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHH---HHHHHHHHHHHHh-cCChH
Q 015496 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTD---IRKISAWILGKAS-QNNPL 207 (405)
Q Consensus 132 lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~---Ir~~Aa~~Lg~~a-qNN~~ 207 (405)
.+.-.+..+.+. ++..|..|...|..+..+.++...+++.||+++|+.+|.+.... .|..|+.+|+++. ..||.
T Consensus 458 vIp~Lv~Ll~S~--s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~ 535 (778)
T 3opb_A 458 LISFLKREMHNL--SPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPG 535 (778)
T ss_dssp HHHHHHHHGGGS--CHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHH
T ss_pred CHHHHHHHHcCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHH
Confidence 344445555543 67889999999999999999999999999999999999876544 8999999999999 45665
Q ss_pred hHHHHHH---cCcHHHHHHhhcC--CCH------------HHHHHHHHHHHHHhcCC----hhhHHHHHhc-CcHHHHHH
Q 015496 208 VQKQVLE---LGALSKLMKMVKS--SFV------------EEAVKALYTVSSLIRNN----LAGQEMFYVE-AGDLMLQD 265 (405)
Q Consensus 208 ~Q~~vle---~G~lp~Ll~LL~s--~~~------------~v~~kAl~ALS~lir~~----~~~~~~f~~~-gGi~~L~~ 265 (405)
.- |-. .|++|+|+.||.. +.. -.+..|+.||.|++... +..+..++.. |+++.|..
T Consensus 536 ~~--f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~ 613 (778)
T 3opb_A 536 LI--FKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIEN 613 (778)
T ss_dssp HH--SSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HH--cCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHH
Confidence 52 211 3999999999983 211 12668999999999875 2446777885 99999999
Q ss_pred hhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcc-hhHHhC------CcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015496 266 ILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP-PLFRDR------FFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (405)
Q Consensus 266 lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~-~~l~~~------g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~ 338 (405)
+|.++ +..+|+.|+++++||+.+ ++.+ ..+.+. +-++.|+.++.++|.++|..|++||.+++...
T Consensus 614 LL~s~--n~~VrrAA~elI~NL~~~------~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~ 685 (778)
T 3opb_A 614 LMLDE--NVPLQRSTLELISNMMSH------PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTI 685 (778)
T ss_dssp GGGCS--SHHHHHHHHHHHHHHHTS------GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHhCC--CHHHHHHHHHHHHHHhCC------cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 99986 567999999999999953 3322 233221 23788999999999999999999999997543
Q ss_pred hh-hHHHHHhcCCchHHHHHHHH
Q 015496 339 TT-EALVLKDFCGLDTALERLRQ 360 (405)
Q Consensus 339 ~~-~~~~v~~~~Gl~~~L~~L~~ 360 (405)
+. ++..+....|+...+..|+.
T Consensus 686 ~~ia~~ll~~~~gi~~Ll~lL~~ 708 (778)
T 3opb_A 686 PLIAKELLTKKELIENAIQVFAD 708 (778)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHccccHHHHHHHHhc
Confidence 43 44444433577777776665
No 38
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.46 E-value=8.7e-13 Score=142.55 Aligned_cols=167 Identities=12% Similarity=0.148 Sum_probs=135.0
Q ss_pred chhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHH---HHHHHHHHHHH
Q 015496 166 NANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVE---EAVKALYTVSS 242 (405)
Q Consensus 166 nA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~---v~~kAl~ALS~ 242 (405)
|...+.+.|++|+|+.+++++++.+|..|+|+|.+++. +++++..+++.|++++|+.+|.+.+.. .+..|+.||++
T Consensus 449 ~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALAr 527 (778)
T 3opb_A 449 NEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTR 527 (778)
T ss_dssp HHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 34567789999999999999999999999999999985 599999999999999999999987654 79999999999
Q ss_pred HhcCChhhHHHHHh---cCcHHHHHHhhcC-CCc-----------cHHHHHHHHHHHHHHhhchhccCC---CCcchhHH
Q 015496 243 LIRNNLAGQEMFYV---EAGDLMLQDILGN-SSF-----------EIRLHRKAVSLVGDLAKCQLENMH---KVEPPLFR 304 (405)
Q Consensus 243 lir~~~~~~~~f~~---~gGi~~L~~lL~s-~~~-----------~~kl~~kA~~lLs~L~~~~~~~~~---~~~~~~l~ 304 (405)
+.-...+.. .|-. .|++++|+.+|.. +.. +..-+..|+.+|+||+.. ++ ++.+..++
T Consensus 528 Llis~np~~-~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~----~~n~~E~~r~~Ii 602 (778)
T 3opb_A 528 MLIFTNPGL-IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASS----ETSDGEEVCKHIV 602 (778)
T ss_dssp HHHTSCHHH-HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHC----CSHHHHHHHHHHH
T ss_pred HHhcCCHHH-HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcC----CcccchHHHHHHH
Confidence 885543322 3421 4999999999983 211 112366899999999963 21 23466677
Q ss_pred hC-CcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015496 305 DR-FFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (405)
Q Consensus 305 ~~-g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~ 338 (405)
+. |+++.|.++|.+++..+|..|+.+|++|+..+
T Consensus 603 ~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~ 637 (778)
T 3opb_A 603 STKVYWSTIENLMLDENVPLQRSTLELISNMMSHP 637 (778)
T ss_dssp HSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSG
T ss_pred HhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc
Confidence 75 99999999999999999999999999999864
No 39
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.40 E-value=8.2e-12 Score=132.13 Aligned_cols=241 Identities=18% Similarity=0.166 Sum_probs=181.8
Q ss_pred HhHHHHHHHHHHcC--CCCHH--HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCC------------------chhH
Q 015496 112 KRQMEIKELMEKLK--TPSDA--QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPID------------------NAND 169 (405)
Q Consensus 112 ~r~~~L~~a~~~~~--~~~d~--~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iD------------------nA~~ 169 (405)
.||.-+..+ +++. -+..+ .-|+..+.+|.+...+.|--..+|+.|..+....+ ++..
T Consensus 38 DRR~Av~~L-k~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~ 116 (651)
T 3grl_A 38 DRRNAVRAL-KSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEI 116 (651)
T ss_dssp HHHHHHHHH-HHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHH
Confidence 366665544 3332 23332 33788888888877677766677888877554332 3344
Q ss_pred HHh-cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH-hHHHHHHc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 015496 170 LSK-LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPL-VQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRN 246 (405)
Q Consensus 170 ~~~-~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~-~Q~~vle~-G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~ 246 (405)
|.+ .++++.|+.+|++.+-.+|..|..+|..++.++|. .|+.|+.. +|++.|+.+|+++.+.+|-.++..|++++++
T Consensus 117 f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~ 196 (651)
T 3grl_A 117 FIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRS 196 (651)
T ss_dssp HHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTT
T ss_pred HHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcC
Confidence 543 57899999999999999999999999999999999 99999976 9999999999999999999999999999999
Q ss_pred ChhhHHHHHhcCcHHHHHHhhcCCCc--cHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChH--
Q 015496 247 NLAGQEMFYVEAGDLMLQDILGNSSF--EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLD-- 322 (405)
Q Consensus 247 ~~~~~~~f~~~gGi~~L~~lL~s~~~--~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~-- 322 (405)
++..|+.+.-.||++.|..++..... --.+...++.++.||++ .++.....|.+.|+++.|..+|..++..
T Consensus 197 n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr-----~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~ 271 (651)
T 3grl_A 197 NGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLK-----NNNSNQNFFKEGSYIQRMKPWFEVGDENSG 271 (651)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHT-----TCHHHHHHHHHTTCGGGGGGGGCCCSCSSC
T ss_pred CHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHh-----cCHHHHHHHHHcCCHHHHHHHhCCCccccc
Confidence 99999998889999999999975421 23477889999999996 3667788999999999999999865321
Q ss_pred ----HHHH---HHHHHHHHhcCCh------hhHHHHHhcCCchHHHHHHH
Q 015496 323 ----LQEK---ALAAIKNLLQLRT------TEALVLKDFCGLDTALERLR 359 (405)
Q Consensus 323 ----v~E~---al~aL~~L~~~~~------~~~~~v~~~~Gl~~~L~~L~ 359 (405)
.... ++.++.-|+..+. .+...+. .+|+...|.+|.
T Consensus 272 W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~-~~g~l~~Ll~ll 320 (651)
T 3grl_A 272 WSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMF-QCGLLQQLCTIL 320 (651)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH-HTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH-HCCCHHHHHHHH
Confidence 2223 6666777766532 2445565 555544444443
No 40
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.20 E-value=6.9e-10 Score=117.52 Aligned_cols=220 Identities=16% Similarity=0.167 Sum_probs=177.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhcC
Q 015496 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKASQN 204 (405)
Q Consensus 127 ~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s--~~~~Ir~~Aa~~Lg~~aqN 204 (405)
++..+.+....+-+.+. .-.|+|..|+..|..+..+. ..-+..+|+++|+..|+. .+.++-..+..+|.++...
T Consensus 17 qs~~etI~~L~~Rl~~~-tl~eDRR~Av~~Lk~~sk~y---~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~ 92 (651)
T 3grl_A 17 HTEAETIQKLCDRVASS-TLLDDRRNAVRALKSLSKKY---RLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISN 92 (651)
T ss_dssp -CHHHHHHHHHHHHHHC-CSHHHHHHHHHHHHHTTTTT---TTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCC
T ss_pred CChhhHHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHh---HHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 35667888888888874 46799999999999996443 345557799999999964 6888888999999888776
Q ss_pred ChH-----------------hHHHHH-HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh-hHHHHHhc-CcHHHHH
Q 015496 205 NPL-----------------VQKQVL-ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVE-AGDLMLQ 264 (405)
Q Consensus 205 N~~-----------------~Q~~vl-e~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~-~~~~f~~~-gGi~~L~ 264 (405)
++. ..+.++ +.+.++.|+.+|++++-.+|..++-.|+.++.+++. .++.++.. +|++.|+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv 172 (651)
T 3grl_A 93 DEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM 172 (651)
T ss_dssp C--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHH
T ss_pred CCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHH
Confidence 654 223444 458999999999998889999999999999999988 78888865 9999999
Q ss_pred HhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCCh----HHHHHHHHHHHHHhcCChh
Q 015496 265 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADL----DLQEKALAAIKNLLQLRTT 340 (405)
Q Consensus 265 ~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~----~v~E~al~aL~~L~~~~~~ 340 (405)
.+|+++ ...+|..++.+|.+|+. .+++..+.+.-+|..+.|++++..... -+.+.++..|.+|+..+..
T Consensus 173 ~lL~d~--rE~iRneallLL~~Lt~-----~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~s 245 (651)
T 3grl_A 173 DLLADS--REVIRNDGVLLLQALTR-----SNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNS 245 (651)
T ss_dssp GGGGCS--SHHHHHHHHHHHHHHHT-----TCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhCc--hHHHHHHHHHHHHHHhc-----CCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHH
Confidence 999986 45699999999999995 466777777778999999999987543 7889999999999999776
Q ss_pred hHHHHHhcCCchHHHHHH
Q 015496 341 EALVLKDFCGLDTALERL 358 (405)
Q Consensus 341 ~~~~v~~~~Gl~~~L~~L 358 (405)
....|+ +.|..+.|..|
T Consensus 246 NQ~~Fr-Et~~i~~L~~L 262 (651)
T 3grl_A 246 NQNFFK-EGSYIQRMKPW 262 (651)
T ss_dssp HHHHHH-HTTCGGGGGGG
T ss_pred HHHHHH-HcCCHHHHHHH
Confidence 778888 55555554444
No 41
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.07 E-value=6.3e-10 Score=119.79 Aligned_cols=170 Identities=12% Similarity=0.091 Sum_probs=137.1
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHH-HhhcCCCHHHHHHHHHHHHHHhcC-ChhhHH
Q 015496 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM-KMVKSSFVEEAVKALYTVSSLIRN-NLAGQE 252 (405)
Q Consensus 175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll-~LL~s~~~~v~~kAl~ALS~lir~-~~~~~~ 252 (405)
.+.|+++.|+|++++.|..||++|+++++ ++..++.++..|++++++ .+|.+++.++|..|.+||.|++.+ .+....
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 56788899999999999999999999997 688999999999998876 568888899999999999999876 467788
Q ss_pred HHHhcCcHHHHHHhhcCCC------------cc-------HHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHH
Q 015496 253 MFYVEAGDLMLQDILGNSS------------FE-------IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 313 (405)
Q Consensus 253 ~f~~~gGi~~L~~lL~s~~------------~~-------~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv 313 (405)
.++..|++++|..++++.. .. ..+...++.+|.+||.. +.+....+...+.++.|+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~-----s~~~~~~v~~~~~l~~l~ 188 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALA-----RDEIHEAVATKQTILRLL 188 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHH-----CHHHHHHHHTCHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhC-----CHHHHHHHHhcccHHHHH
Confidence 8899999999999985310 00 11334577888898853 445566777889999999
Q ss_pred HhccCC---ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCc
Q 015496 314 DLTASA---DLDLQEKALAAIKNLLQLRTTEALVLKDFCGL 351 (405)
Q Consensus 314 ~LL~~~---D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl 351 (405)
.+|.+. ..+++..++.+|..|+....+..+.+.+ .|.
T Consensus 189 ~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~-~~~ 228 (684)
T 4gmo_A 189 FRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITD-DQE 228 (684)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHT-CCS
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHh-cch
Confidence 988543 4689999999999999988777788874 444
No 42
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.96 E-value=6.1e-08 Score=86.91 Aligned_cols=154 Identities=16% Similarity=0.147 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHh
Q 015496 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLV 208 (405)
Q Consensus 129 d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~ 208 (405)
+.......++.|.++ +.+.+..|+..|..+-. .+.++.|+.+|+++++.+|..|+++|+.+..
T Consensus 12 ~~~~~~~~i~~L~~~--~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----- 74 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDD--SYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----- 74 (201)
T ss_dssp CHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred CCcchHHHHHHhcCC--CHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----
Confidence 344455566777665 56788888888876532 2568999999999999999999999998753
Q ss_pred HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015496 209 QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (405)
Q Consensus 209 Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~ 288 (405)
..+++.|+.+|.++++.+|..|+++|+.+. .+ ..++.|..++.++ +..+|..|++++..+.
T Consensus 75 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--~~---------~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 75 ------ERAVEPLIKALKDEDGWVRQSAAVALGQIG--DE---------RAVEPLIKALKDE--DWFVRIAAAFALGEIG 135 (201)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--CG---------GGHHHHHHHTTCS--SHHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--cH---------HHHHHHHHHHcCC--CHHHHHHHHHHHHHhC
Confidence 257899999999988999999999999873 22 3678888888875 6778999999998874
Q ss_pred hchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHH
Q 015496 289 KCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334 (405)
Q Consensus 289 ~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L 334 (405)
. ...++.|..+|.+++..++..++.+|..+
T Consensus 136 ~----------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 136 D----------------ERAVEPLIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp C----------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred C----------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 1 34778899999999999999999999988
No 43
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.92 E-value=6.1e-08 Score=87.60 Aligned_cols=154 Identities=16% Similarity=0.122 Sum_probs=121.5
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhH
Q 015496 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ 209 (405)
Q Consensus 130 ~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q 209 (405)
.+.+...++.|.++ +...+..|+..|..+-. -++++.|+.+|.++++.+|..|+++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~--~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDD--SYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCC--CHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 34455556666644 57788888888887532 2578999999999999999999999998863
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496 210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 210 ~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~ 289 (405)
.++++.|+.+|.++++.+|..|+++|+.+.. + ..++.|+.++.++ +..+|..|+++|..+..
T Consensus 80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--E---------RAVEPLIKALKDE--DWFVRIAAAFALGEIGD 141 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G---------GGHHHHHHHTTCS--SHHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHHhCC--CHHHHHHHHHHHHHcCC
Confidence 3578999999998888999999999998732 2 3678888888775 67789999999988741
Q ss_pred chhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015496 290 CQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (405)
Q Consensus 290 ~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~ 335 (405)
...++.|..+|.+++..++..++.+|..+.
T Consensus 142 ----------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 142 ----------------ERAVEPLIKALKDEDGWVRQSAADALGEIG 171 (211)
T ss_dssp ----------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred ----------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 236788889998889999999999998884
No 44
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.84 E-value=4.9e-08 Score=87.56 Aligned_cols=151 Identities=15% Similarity=0.136 Sum_probs=121.8
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHH
Q 015496 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV 212 (405)
Q Consensus 133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~v 212 (405)
+...++.+.++ +...+..|+..|..+-. .+.++.|+.+|+++++.+|..|+++|+.+..
T Consensus 47 ~~~L~~~l~~~--~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------- 105 (201)
T 3ltj_A 47 VEPLIKALKDE--DAWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--------- 105 (201)
T ss_dssp HHHHHHHTTCS--SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------
Confidence 44455566543 56788888888876532 2578999999999999999999999999753
Q ss_pred HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchh
Q 015496 213 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQL 292 (405)
Q Consensus 213 le~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~ 292 (405)
..+++.|+.++.++++.+|..|+++|+.+- . ...++.|..++.++ +..+|..|+++|..+..
T Consensus 106 --~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~d~--~~~vr~~A~~aL~~~~~--- 167 (201)
T 3ltj_A 106 --ERAVEPLIKALKDEDWFVRIAAAFALGEIG--D---------ERAVEPLIKALKDE--DGWVRQSAADALGEIGG--- 167 (201)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT--C---------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCS---
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--C---------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc---
Confidence 247899999999999999999999999983 2 24678899999876 67799999999998741
Q ss_pred ccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015496 293 ENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (405)
Q Consensus 293 ~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~ 335 (405)
...++.|..++..++..++..|..+|..+-
T Consensus 168 -------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 168 -------------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -------------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 236778888898899999999999998874
No 45
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.82 E-value=4.9e-08 Score=88.19 Aligned_cols=154 Identities=14% Similarity=0.125 Sum_probs=121.8
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHH
Q 015496 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV 212 (405)
Q Consensus 133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~v 212 (405)
+...++.+.++ +...+..|+..|..+-. .+.++.|+.+|+++++.+|..|+++|+.+..
T Consensus 52 ~~~L~~~l~~~--~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------- 110 (211)
T 3ltm_A 52 VEPLIKALKDE--DAWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--------- 110 (211)
T ss_dssp HHHHHHHTTCS--CHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------
Confidence 44455566654 67888888888887632 3578999999999999999999999999863
Q ss_pred HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchh
Q 015496 213 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQL 292 (405)
Q Consensus 213 le~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~ 292 (405)
.++++.|++++.+++..+|..|+++|+.+- .+ ..++.|..+++++ +..+|..|+.+|..+..
T Consensus 111 --~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--~~---------~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~--- 172 (211)
T 3ltm_A 111 --ERAVEPLIKALKDEDWFVRIAAAFALGEIG--DE---------RAVEPLIKALKDE--DGWVRQSAADALGEIGG--- 172 (211)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--CG---------GGHHHHHHHTTCS--SHHHHHHHHHHHHHHCS---
T ss_pred --HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CH---------HHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc---
Confidence 257899999999999999999999999982 22 3678899999875 67899999999998741
Q ss_pred ccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015496 293 ENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (405)
Q Consensus 293 ~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~ 338 (405)
...++.|..++..++..++..|..+|..+....
T Consensus 173 -------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 173 -------------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp -------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred -------------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 246778888899999999999999999887643
No 46
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.81 E-value=2.2e-08 Score=107.83 Aligned_cols=192 Identities=15% Similarity=0.085 Sum_probs=146.3
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHH-hcCCCCHHHHHHHHHHHHHHhcC-ChHhHHHHH
Q 015496 136 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVG-QLNHPDTDIRKISAWILGKASQN-NPLVQKQVL 213 (405)
Q Consensus 136 al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~-lL~s~~~~Ir~~Aa~~Lg~~aqN-N~~~Q~~vl 213 (405)
.++.|.++ +.++|..|+..|.+++++..+...+.+.|++.+++. +|..++.+||..|+++|+|++.. .+++...++
T Consensus 39 ll~~L~S~--~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~ 116 (684)
T 4gmo_A 39 VLKDLKSP--DAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLY 116 (684)
T ss_dssp HHHHHSSS--CCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHcCCC--CHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHH
Confidence 34556554 567899999999999998888889999999998765 78889999999999999999975 588999999
Q ss_pred HcCcHHHHHHhhcCCCH---------------------HHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcC-CC
Q 015496 214 ELGALSKLMKMVKSSFV---------------------EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN-SS 271 (405)
Q Consensus 214 e~G~lp~Ll~LL~s~~~---------------------~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s-~~ 271 (405)
+.|++++|+.++++... .+...++++|.+++.++..+.+.+...++++.|+.+|.+ +.
T Consensus 117 ~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~ 196 (684)
T 4gmo_A 117 RLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADI 196 (684)
T ss_dssp HTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCC
T ss_pred HcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCC
Confidence 99999999999863211 123467888888988888999999999999999998843 33
Q ss_pred ccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcH---HHHHHhccCCChHHHHHHHHHHHHHh
Q 015496 272 FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFL---KSVVDLTASADLDLQEKALAAIKNLL 335 (405)
Q Consensus 272 ~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l---~~Lv~LL~~~D~~v~E~al~aL~~L~ 335 (405)
....++..|+.+|+.|+. .++.....+.+.+.. ..+..+.++.+ ..+..++..|.++.
T Consensus 197 ~~~~v~~~a~~~L~~ls~-----dn~~~~~~i~~~~~~~~~~~ll~~~~~~~-~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 197 APQDIYEEAISCLTTLSE-----DNLKVGQAITDDQETHVYDVLLKLATGTD-PRAVMACGVLHNVF 257 (684)
T ss_dssp SCHHHHHHHHHHHHHHHT-----TCHHHHHHHHTCCSSCHHHHHHHHHHSSC-TTHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhc-----cCHHHHHHHHhcchHHHHHHHHHHhcCCc-HHHHHHHHHHHhHh
Confidence 457789999999999985 345556666666543 33333333444 34556666777663
No 47
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.76 E-value=4.7e-07 Score=85.27 Aligned_cols=121 Identities=10% Similarity=0.079 Sum_probs=82.4
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHH
Q 015496 183 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 262 (405)
Q Consensus 183 L~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~ 262 (405)
++++++.+|..|+++|+.+...++.... .+++.|+.+++++++.+|..|+++|+.+.. ...++.
T Consensus 100 ~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~~~~~~ 163 (280)
T 1oyz_A 100 LNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPL 163 (280)
T ss_dssp HHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHH
T ss_pred hcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----------HHHHHH
Confidence 3566777777777777777655553332 346777777777777777777777776532 136777
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015496 263 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (405)
Q Consensus 263 L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~ 335 (405)
|+.+++++ +..+|..|++++..+.. . ....++.|+.+|..++..++..++.+|..+.
T Consensus 164 L~~~l~d~--~~~vr~~a~~aL~~~~~------~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 164 LINLLKDP--NGDVRNWAAFAININKY------D--------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp HHHHHTCS--SHHHHHHHHHHHHHHTC------C--------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCC--CHHHHHHHHHHHHhhcc------C--------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 78887765 55677888888877631 1 1245677888888888888888888888775
No 48
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.71 E-value=5.1e-07 Score=85.03 Aligned_cols=146 Identities=11% Similarity=0.035 Sum_probs=110.2
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015496 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (405)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL 225 (405)
+...+..++..|..+...... ..-..++.|+.+|+++++.+|..|+++|+.+.. .+++|.|+.++
T Consensus 104 ~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l 168 (280)
T 1oyz_A 104 SACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLINLL 168 (280)
T ss_dssp CHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHH
Confidence 456666677776665321110 112357888999999999999999999998753 25899999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh
Q 015496 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (405)
Q Consensus 226 ~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~ 305 (405)
++++..+|..|+++|+.+..+.+ ..++.|..+++++ +..+|..|+++|..+. +
T Consensus 169 ~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~--~~~vR~~A~~aL~~~~----------------~ 221 (280)
T 1oyz_A 169 KDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK--NEEVRIEAIIGLSYRK----------------D 221 (280)
T ss_dssp TCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS--CHHHHHHHHHHHHHTT----------------C
T ss_pred cCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC--CHHHHHHHHHHHHHhC----------------C
Confidence 99999999999999999843333 2468899999876 6778999999998864 1
Q ss_pred CCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015496 306 RFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (405)
Q Consensus 306 ~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~ 335 (405)
...++.|+.+|..++ ++..++.+|..+.
T Consensus 222 ~~~~~~L~~~l~d~~--vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 222 KRVLSVLCDELKKNT--VYDDIIEAAGELG 249 (280)
T ss_dssp GGGHHHHHHHHTSSS--CCHHHHHHHHHHC
T ss_pred HhhHHHHHHHhcCcc--HHHHHHHHHHhcC
Confidence 357888999997655 8888898888874
No 49
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.43 E-value=5.1e-07 Score=98.48 Aligned_cols=174 Identities=14% Similarity=0.074 Sum_probs=121.6
Q ss_pred HHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC
Q 015496 150 SQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF 229 (405)
Q Consensus 150 k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~ 229 (405)
+..|...|..++.... ..+.. ..++.+..++++++..+|..|+++||+++.+.++.... .-.+.+|.|+.++++++
T Consensus 338 r~~a~~~L~~la~~~~--~~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~ 413 (852)
T 4fdd_A 338 RKCSAAALDVLANVYR--DELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKK 413 (852)
T ss_dssp HHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHhcc--HHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCC
Confidence 4455555555543322 12222 35677778888999999999999999999987653332 22468999999999999
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcH
Q 015496 230 VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFL 309 (405)
Q Consensus 230 ~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l 309 (405)
+.+|..|+|+|+.++...++....-+-.+.++.|+..+.++ +.++|..|++++.+++... .+...+.+ ..++
T Consensus 414 ~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~--~~~vr~~a~~aL~~l~~~~----~~~l~~~l--~~ll 485 (852)
T 4fdd_A 414 ALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS--NKRVQEAACSAFATLEEEA----CTELVPYL--AYIL 485 (852)
T ss_dssp HHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHH----GGGGGGGH--HHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHh----hHhhHhHH--HHHH
Confidence 99999999999998875332111111124678888888775 6789999999999999642 22233332 4678
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHh
Q 015496 310 KSVVDLTASADLDLQEKALAAIKNLL 335 (405)
Q Consensus 310 ~~Lv~LL~~~D~~v~E~al~aL~~L~ 335 (405)
+.|+.++...+......++.++..++
T Consensus 486 ~~L~~~l~~~~~~~~~~~~~ai~~l~ 511 (852)
T 4fdd_A 486 DTLVFAFSKYQHKNLLILYDAIGTLA 511 (852)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 88888887777666666777777775
No 50
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.42 E-value=2.3e-08 Score=84.58 Aligned_cols=119 Identities=10% Similarity=0.070 Sum_probs=89.2
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 015496 174 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM 253 (405)
Q Consensus 174 Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~ 253 (405)
..++.++.+|+++++.+|..|+++|+.+... .++.|+.+|+++++.+|..|+++|+.+- .+
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~--~~----- 72 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQ--DE----- 72 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGC--SH-----
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcC--CH-----
Confidence 4678888999999999999999999876421 3689999999888999999999999873 22
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHH
Q 015496 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKN 333 (405)
Q Consensus 254 f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~ 333 (405)
..++.|..+|+++ +..+|..|+++|..+.. ...++.|..+|..+|..++..|+.+|..
T Consensus 73 ----~a~~~L~~~L~d~--~~~VR~~A~~aL~~~~~----------------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 73 ----RAVEPLIKLLEDD--SGFVRSGAARSLEQIGG----------------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ----HHHHHHHHHHHHC--CTHHHHHHHHHHHHHCS----------------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ----HHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc----------------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2478888888765 56789999999998741 2357888999988899999999888764
No 51
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.37 E-value=6.8e-06 Score=84.28 Aligned_cols=177 Identities=11% Similarity=0.010 Sum_probs=122.5
Q ss_pred CCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh
Q 015496 145 LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (405)
Q Consensus 145 ~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~L 224 (405)
.+.+.|..|++.|..+++..... ......+|.+..+++++++.+|..|+.+++.++...+.- ......+|.+..+
T Consensus 176 ~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~ 250 (588)
T 1b3u_A 176 DTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQA 250 (588)
T ss_dssp SCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHH
Confidence 36788889999999888765432 223456888889999999999999999999999865432 2234578899999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHH
Q 015496 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (405)
Q Consensus 225 L~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~ 304 (405)
+++++..+|..|+.+|+.++....+ .......++.+..+++++ +..+|..|++.+..++.. ..++......
T Consensus 251 ~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~----~~~~~~~~~~ 321 (588)
T 1b3u_A 251 AEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCEN----LSADCRENVI 321 (588)
T ss_dssp HTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHT----SCTTTHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHH----hChhhhhhHH
Confidence 9888889999999999999865322 122345678899999876 667899999999999863 2222111011
Q ss_pred hCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015496 305 DRFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (405)
Q Consensus 305 ~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~ 335 (405)
-..+++.+..++...+..++..++.+|..++
T Consensus 322 ~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~ 352 (588)
T 1b3u_A 322 MSQILPCIKELVSDANQHVKSALASVIMGLS 352 (588)
T ss_dssp HHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 2244555555555555555555555554443
No 52
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.33 E-value=5.2e-06 Score=85.13 Aligned_cols=172 Identities=11% Similarity=0.020 Sum_probs=124.0
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015496 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (405)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL 225 (405)
+...+..+++.+..++...... +..-..+|.++.+|..++..+|..|+.+++.++..... ...-...+|.|+.++
T Consensus 415 ~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~ 489 (588)
T 1b3u_A 415 KWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK---EWAHATIIPKVLAMS 489 (588)
T ss_dssp SHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHTHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc---hhHHHHHHHHHHHHh
Confidence 3455666666666554332211 11112467888899999999999999999999875332 122346789999988
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh
Q 015496 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (405)
Q Consensus 226 ~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~ 305 (405)
.+++..+|..++++++.++..... .++....++.|..+++++ +..+|..+++++..++.. .++ .+..
T Consensus 490 ~~~~~~~R~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~l~d~--~~~Vr~~a~~~l~~l~~~----~~~----~~~~ 556 (588)
T 1b3u_A 490 GDPNYLHRMTTLFCINVLSEVCGQ---DITTKHMLPTVLRMAGDP--VANVRFNVAKSLQKIGPI----LDN----STLQ 556 (588)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHH---HHHHHHTHHHHHHGGGCS--CHHHHHHHHHHHHHHGGG----SCH----HHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHhhCCCC--CchHHHHHHHHHHHHHHH----hch----hhhH
Confidence 888889999999999999875332 233345778899988876 567899999999999853 221 2334
Q ss_pred CCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015496 306 RFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (405)
Q Consensus 306 ~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~ 335 (405)
..+++.|..++...|.++++.|..++..|.
T Consensus 557 ~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 557 SEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 567788888888889999999999998774
No 53
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.32 E-value=3e-05 Score=76.16 Aligned_cols=193 Identities=17% Similarity=0.104 Sum_probs=145.1
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-ccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 015496 128 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLI-LVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP 206 (405)
Q Consensus 128 ~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~-Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~ 206 (405)
++......+++.|.+. +.+++..+|-.|.. +-++.+.|..|+..||+..|+......+.+.+..+..+++.+.-. .
T Consensus 115 sps~ra~~iiekL~~~--~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~-v 191 (339)
T 3dad_A 115 QLSVRVNAILEKLYSS--SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLF-V 191 (339)
T ss_dssp CHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTS-H
T ss_pred CcHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhc-c
Confidence 4556777888888865 57889999999999 557899999999999999999999999999999999999999964 3
Q ss_pred HhHHHHH-HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh-------cCc---HHHHHHhhcC-CCccH
Q 015496 207 LVQKQVL-ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV-------EAG---DLMLQDILGN-SSFEI 274 (405)
Q Consensus 207 ~~Q~~vl-e~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~-------~gG---i~~L~~lL~s-~~~~~ 274 (405)
.--+.++ ....|..+..++.+....+...|+.-|-+++-..+.....+.+ ..| ++.|+.+|++ +..+.
T Consensus 192 ~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~ 271 (339)
T 3dad_A 192 DGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADP 271 (339)
T ss_dssp HHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCH
T ss_pred ccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCH
Confidence 4444455 3467888999999877788888888888888776655544433 223 8899999972 12478
Q ss_pred HHHHHHHHHHHHHhhchhccCCC----CcchhHHhCCcHHHHHHhccCC--ChHHHHH
Q 015496 275 RLHRKAVSLVGDLAKCQLENMHK----VEPPLFRDRFFLKSVVDLTASA--DLDLQEK 326 (405)
Q Consensus 275 kl~~kA~~lLs~L~~~~~~~~~~----~~~~~l~~~g~l~~Lv~LL~~~--D~~v~E~ 326 (405)
.++.+|..+|..+.... ++. +..+.+.+.|+=..+..++... |++++++
T Consensus 272 elq~~amtLIN~lL~~a---pd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 272 ELLVYTVTLINKTLAAL---PDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHHHHHHHHC---SSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC---CChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 89999999999988641 222 2334455566666666666654 6666654
No 54
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.31 E-value=1.1e-05 Score=74.65 Aligned_cols=173 Identities=10% Similarity=0.107 Sum_probs=128.4
Q ss_pred CCHHHHHHHHHHHHHccCC-CCc-hhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCCh-HhHHHHHHcCcHHH
Q 015496 145 LSLEDSQRALQELLILVEP-IDN-ANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSK 220 (405)
Q Consensus 145 ~t~e~k~~AL~~L~~Lve~-iDn-A~~~~~~Ggi~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aqNN~-~~Q~~vle~G~lp~ 220 (405)
.+-..|..|+..|..+++. .+. ..++.+ .++.|...|. ..+..+|..|+.+++.++..-. .....+ ...+|.
T Consensus 27 ~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~--i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~--~~ilp~ 102 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTDHPKLENGEYGA--LVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA--SACVPS 102 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHCSSBCCCCCHH--HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH--HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCCCCHHH--HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHH
Confidence 3678889999999988865 221 223332 3677888884 8999999999999999996411 111111 247899
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCC--
Q 015496 221 LMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV-- 298 (405)
Q Consensus 221 Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~-- 298 (405)
|+..+.+.+..+|..|..||.+++...+ .+. -++.|...+++. +..+|..++.+|..++.. ..++
T Consensus 103 ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~-----ll~~l~~~l~~~--~~~vr~~~l~~l~~~l~~----~~~~~~ 169 (242)
T 2qk2_A 103 LLEKFKEKKPNVVTALREAIDAIYASTS--LEA-----QQESIVESLSNK--NPSVKSETALFIARALTR----TQPTAL 169 (242)
T ss_dssp HHHGGGCCCHHHHHHHHHHHHHHHTTSC--HHH-----HHHHHHHHTTCS--CHHHHHHHHHHHHHHHTT----CCGGGC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHcCC--HHH-----HHHHHHHHHcCC--ChHHHHHHHHHHHHHHHH----cCCCCc
Confidence 9999999999999999999999987643 222 356777888875 678999999999997642 2222
Q ss_pred cchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015496 299 EPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336 (405)
Q Consensus 299 ~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~ 336 (405)
....+ ..+++.|+.+|...+..+|..|..++..+..
T Consensus 170 ~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 170 NKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred cHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 12233 2689999999999999999999999999874
No 55
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.31 E-value=6e-06 Score=90.02 Aligned_cols=180 Identities=14% Similarity=0.082 Sum_probs=127.8
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHh--cCCHHHHHHhc-----------CC-----------CCHHHHHHHHHHHHHH
Q 015496 146 SLEDSQRALQELLILVEPIDNANDLSK--LGGLSVLVGQL-----------NH-----------PDTDIRKISAWILGKA 201 (405)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~~~~--~Ggi~~Lv~lL-----------~s-----------~~~~Ir~~Aa~~Lg~~ 201 (405)
+.+.+..|++-+..+++.....+.+.. ...+|.++..+ .. .+-.+|..|+.+|+.+
T Consensus 269 ~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~l 348 (852)
T 4fdd_A 269 DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVL 348 (852)
T ss_dssp SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHH
Confidence 567788888888888765422221111 13466666666 22 2235799999999999
Q ss_pred hcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHH
Q 015496 202 SQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAV 281 (405)
Q Consensus 202 aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~ 281 (405)
+...++ .++. ..+|.+..++.+++..+|..|+++|++++.+.......+ -.+.++.|..+++++ +..+|..|+
T Consensus 349 a~~~~~---~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~-l~~~l~~l~~~l~d~--~~~Vr~~a~ 421 (852)
T 4fdd_A 349 ANVYRD---ELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY-LPELIPHLIQCLSDK--KALVRSITC 421 (852)
T ss_dssp HHHHGG---GGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGG-HHHHHHHHHHHTTCS--SHHHHHHHH
T ss_pred HHhccH---HHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHHcCCC--CHHHHHHHH
Confidence 986542 2222 467888889988888999999999999998776433222 245788999999876 678999999
Q ss_pred HHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496 282 SLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (405)
Q Consensus 282 ~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~ 337 (405)
|++..++.... ....... -.++++.+++.|..+++.+++.|+++|.+++..
T Consensus 422 ~~l~~l~~~~~---~~~~~~~--~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 422 WTLSRYAHWVV---SQPPDTY--LKPLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp HHHHHTHHHHH---HSCTTTT--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---cchHHHH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 99999986321 0111111 136788899999888999999999999999853
No 56
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.31 E-value=1e-05 Score=85.25 Aligned_cols=161 Identities=16% Similarity=0.169 Sum_probs=115.5
Q ss_pred HhHHHHHHHHHHc-CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHH
Q 015496 112 KRQMEIKELMEKL-KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI 190 (405)
Q Consensus 112 ~r~~~L~~a~~~~-~~~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~I 190 (405)
+|.+-+++++-.+ .|.+.....-..++.+.++ +.+.|..+.-.+..+.+.. .++. .-.+..+.+.|+++++.+
T Consensus 29 ~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~s~--~~~~Krl~yl~l~~~~~~~---~e~~-~l~~n~l~kdL~~~n~~i 102 (591)
T 2vgl_B 29 KRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTD--NLELKKLVYLYLMNYAKSQ---PDMA-IMAVNSFVKDCEDPNPLI 102 (591)
T ss_dssp HHHHHHHHHHHHHHTTCCCGGGHHHHHHTTSSS--CHHHHHHHHHHHHHHHHHS---HHHH-HTTHHHHGGGSSSSSHHH
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcccC---chHH-HHHHHHHHHHcCCCCHHH
Confidence 3556666665443 3444334444556655443 5677766666666654421 1222 234677888899999999
Q ss_pred HHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCC
Q 015496 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 270 (405)
Q Consensus 191 r~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~ 270 (405)
|..|..+|+++. +++....+ +|.+.+++.++++.+|.+|++|+..+.+.++.... ..+.++.|..+|.++
T Consensus 103 r~~AL~~L~~i~--~~~~~~~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~---~~~~~~~l~~lL~d~ 172 (591)
T 2vgl_B 103 RALAVRTMGCIR--VDKITEYL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE---DQGFLDSLRDLIADS 172 (591)
T ss_dssp HHHHHHHHHTCC--SGGGHHHH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH---HHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHcCC--hHHHHHHH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc---cccHHHHHHHHhCCC
Confidence 999999999986 56555543 58899999999999999999999999998876443 245678999999875
Q ss_pred CccHHHHHHHHHHHHHHhhc
Q 015496 271 SFEIRLHRKAVSLVGDLAKC 290 (405)
Q Consensus 271 ~~~~kl~~kA~~lLs~L~~~ 290 (405)
+..++..|+.++..++..
T Consensus 173 --d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 173 --NPMVVANAVAALSEISES 190 (591)
T ss_dssp --CHHHHHHHHHHHHHHTTS
T ss_pred --ChhHHHHHHHHHHHHHhh
Confidence 678999999999999853
No 57
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.30 E-value=5.9e-05 Score=70.68 Aligned_cols=186 Identities=13% Similarity=0.149 Sum_probs=143.5
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHH-hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015496 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLS-KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (405)
Q Consensus 132 lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~-~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~ 210 (405)
..-..++.|.+ .+..-+.++|..|++++...|-.-... =-.+++.++.++.+.|+.+-..|..||+++..|.|-.-+
T Consensus 34 ~l~~L~~LL~d--kD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 34 ALFLILELAGE--DDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred HHHHHHHHHhc--cchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 34445555543 367889999999999998765433333 336899999999999999999999999999999998777
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (405)
Q Consensus 211 ~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~ 290 (405)
.+.+ .+..|..++.++++-.+..|.-.++.+ +--.. .. ..+..|..++.|+ +..+|.-+..++.+++..
T Consensus 112 ~y~K--l~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~-~~-----~V~~~l~sLl~Sk--d~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 112 TFLK--AAKTLVSLLESPDDMMRIETIDVLSKL-QPLED-SK-----LVRTYINELVVSP--DLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp HHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCC-CH-----HHHHHHHHHHTCS--SHHHHHHHHHHHHHHGGG
T ss_pred HHHH--HHHHHHHHhcCCCchHHHHHHHHhCcC-Ccccc-hH-----HHHHHHHHHHhCC--ChhHHHHHHHHHHHhhcc
Confidence 7764 567888999988888888888888887 22111 12 2467889999765 788999999999999864
Q ss_pred hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015496 291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (405)
Q Consensus 291 ~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~ 338 (405)
..+++... .++.-+.++|++.|+.+++.|+.++..+++.+
T Consensus 181 ---S~D~~i~~-----~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 181 ---SADSGHLT-----LILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp ---CSSCCCGG-----GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred ---cCCHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 23444333 35556888999999999999999999999763
No 58
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.28 E-value=2.6e-05 Score=82.06 Aligned_cols=166 Identities=16% Similarity=0.161 Sum_probs=128.0
Q ss_pred CHHHHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh
Q 015496 146 SLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (405)
Q Consensus 146 t~e~k~~AL~~L~~Lve-~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~L 224 (405)
+.+.|..++..+-++.- ..|. ..+++.+++++.+++..+|..+.-.+..++..+|+... -+++.|.+-
T Consensus 26 ~~~~k~~~~~kli~~~~~G~d~------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~-----l~~n~l~kd 94 (591)
T 2vgl_B 26 KKEKRKEAVKKVIAAMTVGKDV------SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAI-----MAVNSFVKD 94 (591)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCC------GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHH-----TTHHHHGGG
T ss_pred CHHHHHHHHHHHHHHHHCCCCh------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHH-----HHHHHHHHH
Confidence 34566666666655432 2221 23688899999999999999999999999987776543 346788888
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHH
Q 015496 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (405)
Q Consensus 225 L~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~ 304 (405)
+.++++.+|..|+.+||++. .+.....+ ++.+..++.++ ++.+|++|++++..++.. +++ .+.
T Consensus 95 L~~~n~~ir~~AL~~L~~i~--~~~~~~~l-----~~~l~~~L~d~--~~~VRk~A~~al~~i~~~-----~p~---~~~ 157 (591)
T 2vgl_B 95 CEDPNPLIRALAVRTMGCIR--VDKITEYL-----CEPLRKCLKDE--DPYVRKTAAVCVAKLHDI-----NAQ---MVE 157 (591)
T ss_dssp SSSSSHHHHHHHHHHHHTCC--SGGGHHHH-----HHHHHHHSSCS--CHHHHHHHHHHHHHHHHS-----SCC---CHH
T ss_pred cCCCCHHHHHHHHHHHHcCC--hHHHHHHH-----HHHHHHHcCCC--ChHHHHHHHHHHHHHHhh-----Chh---hcc
Confidence 99989999999999999984 44444433 46788889875 788999999999999862 343 334
Q ss_pred hCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCCh
Q 015496 305 DRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 339 (405)
Q Consensus 305 ~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~ 339 (405)
+.++++.+..+|..+|+.++..|+.+|..+.....
T Consensus 158 ~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 158 DQGFLDSLRDLIADSNPMVVANAVAALSEISESHP 192 (591)
T ss_dssp HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCC
Confidence 46899999999999999999999999999987643
No 59
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.14 E-value=6.3e-05 Score=74.58 Aligned_cols=199 Identities=14% Similarity=0.133 Sum_probs=124.5
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCc-h--hHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 015496 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN-A--NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP 206 (405)
Q Consensus 130 ~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDn-A--~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~ 206 (405)
..++...+..+.+.+.+.+.|..|+..+..+++-+.. - ..+.+. .++.+..++.++++++|..++++++.++...+
T Consensus 171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~ 249 (462)
T 1ibr_B 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHF-IMQVVCEATQCPDTRVRVAALQNLVKIMSLYY 249 (462)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHH-HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3456666677776544678888888888886654321 0 111111 35566677788999999999999999998765
Q ss_pred HhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh------------------hh---H----HHH-------
Q 015496 207 LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL------------------AG---Q----EMF------- 254 (405)
Q Consensus 207 ~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~------------------~~---~----~~f------- 254 (405)
+.-...+..+.++.++..+++.++.++..|+..++.+++... .. . ..+
T Consensus 250 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~ 329 (462)
T 1ibr_B 250 QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT 329 (462)
T ss_dssp GGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHH
Confidence 421111111566667777776667777777777776654310 00 0 000
Q ss_pred --------------------------Hh-------cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCC-cc
Q 015496 255 --------------------------YV-------EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV-EP 300 (405)
Q Consensus 255 --------------------------~~-------~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~-~~ 300 (405)
.. ...++.+...++++ +.++|..|+++++.++.+ ..++ ..
T Consensus 330 l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~--~~~~r~aal~~l~~l~~~----~~~~~~~ 403 (462)
T 1ibr_B 330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEG----PEPSQLK 403 (462)
T ss_dssp TTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSS----SCTTTTC
T ss_pred HHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHhcC----CcHHHHH
Confidence 00 01233344445543 566777788888877742 2211 11
Q ss_pred hhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496 301 PLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (405)
Q Consensus 301 ~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~ 337 (405)
+.+ ..+++.++.+|..+++.+|..|+++|++++..
T Consensus 404 ~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 404 PLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp TTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 222 46899999999999999999999999999853
No 60
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.13 E-value=9.4e-05 Score=69.63 Aligned_cols=182 Identities=9% Similarity=0.020 Sum_probs=129.1
Q ss_pred CCHHHHHHHHHHHHH-ccCC-CCc---hhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCC--hHhH-HHHHHc
Q 015496 145 LSLEDSQRALQELLI-LVEP-IDN---ANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNN--PLVQ-KQVLEL 215 (405)
Q Consensus 145 ~t~e~k~~AL~~L~~-Lve~-iDn---A~~~~~~Ggi~~Lv~lL-~s~~~~Ir~~Aa~~Lg~~aqNN--~~~Q-~~vle~ 215 (405)
..-.+|..|++.|.. +++. .+. ..++.+ .+..|.+.| +..+..++..|+.+|+.++.+= +..+ ....
T Consensus 28 ~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~--~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~-- 103 (249)
T 2qk1_A 28 SKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSN--LLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVS-- 103 (249)
T ss_dssp SSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHH--HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHH--
T ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcccHHH--HHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHH--
Confidence 367889999999999 8753 121 123333 267777888 6889999999999999999642 2333 2222
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccC
Q 015496 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (405)
Q Consensus 216 G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~ 295 (405)
-.+|.++..+.+....++..+.+|+-+++.+..+....-.-...++.|...|+++ +..+|..++.+|..++.. .
T Consensus 104 ~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k--~~~vk~~al~~l~~~~~~----~ 177 (249)
T 2qk1_A 104 LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK--TPQIRMECTQLFNASMKE----E 177 (249)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHH----C
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHH----c
Confidence 3689999999998899999999999999886532110000001456778888876 568999999999999863 1
Q ss_pred CC--CcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015496 296 HK--VEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336 (405)
Q Consensus 296 ~~--~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~ 336 (405)
.. ..........+++.|..++...+.++|+.|..++..+..
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 11 111112225799999999999999999999999998863
No 61
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.06 E-value=4.2e-05 Score=82.23 Aligned_cols=183 Identities=9% Similarity=0.099 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh-HhHHHHHHcCcHHHHHHhhc
Q 015496 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVK 226 (405)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~-~~Q~~vle~G~lp~Ll~LL~ 226 (405)
..+..|.+.|..++.... ..+.. ..++.+...+++++..+|..|++++|.++.+.. +.-...++ ..+|.|+..+.
T Consensus 346 ~~r~~a~~~L~~l~~~~~--~~~~~-~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~ 421 (861)
T 2bpt_A 346 NVSMSAGACLQLFAQNCG--NHILE-PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMN 421 (861)
T ss_dssp HHHHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGG
T ss_pred cHHHHHHHHHHHHHHHcc--HhHHH-HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcC
Confidence 345566666666554332 11111 235556667788899999999999999998753 32222332 57899999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhhH--HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHH
Q 015496 227 SSFVEEAVKALYTVSSLIRNNLAGQ--EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (405)
Q Consensus 227 s~~~~v~~kAl~ALS~lir~~~~~~--~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~ 304 (405)
++++.+|..++|+|+.++...++.. ..+ -...++.|...++++ .+++..|++++.+++..-.+.......+.+
T Consensus 422 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~~l~~~~- 496 (861)
T 2bpt_A 422 DQSLQVKETTAWCIGRIADSVAESIDPQQH-LPGVVQACLIGLQDH---PKVATNCSWTIINLVEQLAEATPSPIYNFY- 496 (861)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHGGGSCTTTT-HHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH-
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhhcCCHHH-HHHHHHHHHHHhccC---hHHHHHHHHHHHHHHHhcccccchhhHHHH-
Confidence 9889999999999999987533210 011 113467788888763 678999999999998641000011122222
Q ss_pred hCCcHHHHHHhccCCC--hHHHHHHHHHHHHHhcCChh
Q 015496 305 DRFFLKSVVDLTASAD--LDLQEKALAAIKNLLQLRTT 340 (405)
Q Consensus 305 ~~g~l~~Lv~LL~~~D--~~v~E~al~aL~~L~~~~~~ 340 (405)
..+++.|+.++.+.| ..++..++.+|..++.....
T Consensus 497 -~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~ 533 (861)
T 2bpt_A 497 -PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATD 533 (861)
T ss_dssp -HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG
T ss_pred -HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcch
Confidence 256788888888644 78999999999999865443
No 62
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.03 E-value=0.0001 Score=78.15 Aligned_cols=199 Identities=15% Similarity=0.118 Sum_probs=135.3
Q ss_pred hHHHHHHHHHHc-CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHH
Q 015496 113 RQMEIKELMEKL-KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIR 191 (405)
Q Consensus 113 r~~~L~~a~~~~-~~~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir 191 (405)
|.+-+++++-.+ .|.+.....-++++.+.++ +.+.|..+.-.+..+.+.- .++.-+ .+..|.+-|+++++-+|
T Consensus 51 k~~~l~kli~~~~~G~d~~~~~~~vik~~~s~--~~~~Krl~Yl~~~~~~~~~---~e~~~l-~in~l~kDL~~~n~~vr 124 (618)
T 1w63_A 51 RCRNVAKLLYMHMLGYPAHFGQLECLKLIASQ--KFTDKRIGYLGAMLLLDER---QDVHLL-MTNCIKNDLNHSTQFVQ 124 (618)
T ss_dssp HHHHHHHHHHHHHTTCCCGGGHHHHHHHHHSS--SHHHHHHHHHHHHHHCCCC---HHHHHH-HHHHHHHHHSCSSSHHH
T ss_pred HHHHHHHHHHHHHcCCCCcchHHHHHHHHcCC--chHHHHHHHHHHHHHhCCC---cHHHHH-HHHHHHHhcCCCCHhHH
Confidence 334455444322 2333233344445555533 5667766666677665432 232221 46677888899999999
Q ss_pred HHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCC
Q 015496 192 KISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS 271 (405)
Q Consensus 192 ~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~ 271 (405)
..|+++||++. +++.-+ ..++.+.+++.++++.+|.+|+.|+..+.+.+|.... +-++.|..+|.+.
T Consensus 125 ~lAL~~L~~i~--~~~~~~-----~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~- 191 (618)
T 1w63_A 125 GLALCTLGCMG--SSEMCR-----DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEK- 191 (618)
T ss_dssp HHHHHHHHHHC--CHHHHH-----HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCC-
T ss_pred HHHHHHHHhcC--CHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCC-
Confidence 99999999998 354332 4678999999999999999999999999998887554 4566777888765
Q ss_pred ccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC---------------CChHHHHHHHHHHHHHhc
Q 015496 272 FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS---------------ADLDLQEKALAAIKNLLQ 336 (405)
Q Consensus 272 ~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~---------------~D~~v~E~al~aL~~L~~ 336 (405)
+..++..|++++..++.. +++....+. .+++.++.+|.. .++-.|..++.+|..+..
T Consensus 192 -d~~V~~~Al~~L~~i~~~-----~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~ 263 (618)
T 1w63_A 192 -NHGVLHTSVVLLTEMCER-----SPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGR 263 (618)
T ss_dssp -CHHHHHHHHHHHHHHCCS-----HHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTT
T ss_pred -CHhHHHHHHHHHHHHHHh-----ChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCC
Confidence 678999999999999842 222222232 567777776652 477788888888888876
Q ss_pred CC
Q 015496 337 LR 338 (405)
Q Consensus 337 ~~ 338 (405)
..
T Consensus 264 ~~ 265 (618)
T 1w63_A 264 ND 265 (618)
T ss_dssp TC
T ss_pred CC
Confidence 53
No 63
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.01 E-value=4.7e-05 Score=82.01 Aligned_cols=180 Identities=15% Similarity=0.194 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh-HhHHHHHHcCcHHHHHHhhcC
Q 015496 149 DSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVKS 227 (405)
Q Consensus 149 ~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~-~~Q~~vle~G~lp~Ll~LL~s 227 (405)
.|..|...|..+++... ..+.. ..++.+...|.+++..+|..|++++|.++.+.+ +.-...+ ...+|.|+..+++
T Consensus 344 ~r~~a~~~l~~l~~~~~--~~~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d 419 (876)
T 1qgr_A 344 PCKAAGVCLMLLATCCE--DDIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKD 419 (876)
T ss_dssp HHHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHCc--HhhHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCC
Confidence 45566666655544322 12221 345666677888999999999999999998764 3222222 3589999999999
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhH--HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhc-------c---C
Q 015496 228 SFVEEAVKALYTVSSLIRNNLAGQ--EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE-------N---M 295 (405)
Q Consensus 228 ~~~~v~~kAl~ALS~lir~~~~~~--~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~-------~---~ 295 (405)
++..+|..|+|+|+.++...++.. ..++ ...++.|...+.++ .+++..+++++.+++....+ . .
T Consensus 420 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~ 495 (876)
T 1qgr_A 420 PSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSAE---PRVASNVCWAFSSLAEAAYEAADVADDQEEPA 495 (876)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCC
T ss_pred CCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhhhcccccccccccc
Confidence 889999999999999998765421 0111 23567777888763 67899999999999864210 0 0
Q ss_pred CCCcchhHHhCCcHHHHHHhccCC---ChHHHHHHHHHHHHHhcCC
Q 015496 296 HKVEPPLFRDRFFLKSVVDLTASA---DLDLQEKALAAIKNLLQLR 338 (405)
Q Consensus 296 ~~~~~~~l~~~g~l~~Lv~LL~~~---D~~v~E~al~aL~~L~~~~ 338 (405)
.....+.+ ..+++.|..++... +..++..++.++..++...
T Consensus 496 ~~~l~~~~--~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~ 539 (876)
T 1qgr_A 496 TYCLSSSF--ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNS 539 (876)
T ss_dssp CCSSTTTH--HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTC
T ss_pred chhhhHhH--HHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHC
Confidence 01122232 25788888888764 3578888999999888653
No 64
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.99 E-value=5.3e-06 Score=69.80 Aligned_cols=87 Identities=17% Similarity=0.208 Sum_probs=72.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 015496 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY 255 (405)
Q Consensus 176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~ 255 (405)
++.|+.+|+++++.+|..|+++|+.+.. + .+++.|+.++++++..+|..|+++|+.+- .+
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~--~~------- 103 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------RAVEPLIKLLEDDSGFVRSGAARSLEQIG--GE------- 103 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------HHHHHHHHHHHHCCTHHHHHHHHHHHHHC--SH-------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--cH-------
Confidence 7999999999999999999999999863 2 35899999999888899999999999873 22
Q ss_pred hcCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 015496 256 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGD 286 (405)
Q Consensus 256 ~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~ 286 (405)
.+++.|..+++++ +..+|..|+++|..
T Consensus 104 --~a~~~L~~~l~d~--~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 104 --RVRAAMEKLAETG--TGFARKVAVNYLET 130 (131)
T ss_dssp --HHHHHHHHHTTSC--CTHHHHHHHHHGGG
T ss_pred --HHHHHHHHHHhCC--CHHHHHHHHHHHHh
Confidence 3578889999865 56788888887653
No 65
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=97.96 E-value=3e-05 Score=75.09 Aligned_cols=136 Identities=15% Similarity=0.188 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHH--hcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc--CcHHHHH-
Q 015496 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVG--QLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLM- 222 (405)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~--lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~--G~lp~Ll- 222 (405)
+.-..||+.|+++.+++...-.|+... +..|-+ |..+..+.+|..|+++||.+-+|||.+-+.|.+. ..+..+.
T Consensus 43 ~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~ 121 (315)
T 3qml_C 43 ARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMA 121 (315)
T ss_dssp HHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHH
Confidence 345689999999999999888887643 444444 4456788999999999999999999999988875 3333333
Q ss_pred ---HhhcC---CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496 223 ---KMVKS---SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 223 ---~LL~s---~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~ 289 (405)
.++.. ....+.+.-+++|..++.+.. .| ...|+..|..++...+.+..+|+|++-++.++-.
T Consensus 122 ~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~----~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 122 ALSNLNDSNHRSSNILIKRYLSILNELPVTSE----DL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHCC--CCCHHHHHHHHHHHHHSCCCST----TC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHhcChH----hh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 33322 234556777999999998752 24 3568888888886433367789999999999874
No 66
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.94 E-value=0.00013 Score=82.59 Aligned_cols=192 Identities=10% Similarity=0.085 Sum_probs=133.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCc-hhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHH
Q 015496 134 QIAIDDLNNSTLSLEDSQRALQELLILVEPIDN-ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV 212 (405)
Q Consensus 134 k~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDn-A~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~v 212 (405)
...++.+.++ +.+.|..|+..|...+...-. ...-.....++.+++.|.++++.+|..|+.+|+.++..-+..+
T Consensus 9 ~~lL~~l~s~--d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~--- 83 (1230)
T 1u6g_C 9 SNLLEKMTSS--DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ--- 83 (1230)
T ss_dssp HHHHHHTTCS--SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH---
T ss_pred HHHHHhcCCC--CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHH---
Confidence 3444444443 567888888888776533100 0011112357788999999999999999999999998765411
Q ss_pred HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh-----HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015496 213 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-----QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 287 (405)
Q Consensus 213 le~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~-----~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L 287 (405)
+ ...++.|+..+.++++.+|..|..+|+.++....+. .....-...++.|...+.+. .+..++..|+.++..+
T Consensus 84 ~-~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~-~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 84 V-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ-EDVSVQLEALDIMADM 161 (1230)
T ss_dssp H-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC-SCHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHH
Confidence 1 236788899888888888999999999998775442 01111234678888888842 3678899999999999
Q ss_pred hhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015496 288 AKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (405)
Q Consensus 288 ~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~ 338 (405)
+.. ..+...+.+ ..+++.+...|.+++..+|+.|+.+|..++...
T Consensus 162 ~~~----~~~~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~ 206 (1230)
T 1u6g_C 162 LSR----QGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSC 206 (1230)
T ss_dssp HHH----TCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC
T ss_pred HHH----hHhHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhc
Confidence 853 122222222 357788888898889999999999999998654
No 67
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.94 E-value=3.3e-05 Score=76.62 Aligned_cols=199 Identities=10% Similarity=0.002 Sum_probs=134.9
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhH------H------HhcCCHHHHHHhcCCCCHHHHHHHHHH
Q 015496 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAND------L------SKLGGLSVLVGQLNHPDTDIRKISAWI 197 (405)
Q Consensus 130 ~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~------~------~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~ 197 (405)
+..+...+.++.+.+.+.+.|..|...|..++.......+ . .+...-..|+..|.++++.+ ..++.+
T Consensus 34 ~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~ 112 (462)
T 1ibr_B 34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQC 112 (462)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHH
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHH
Confidence 4566677788888666788899998889988755321110 0 11122345778888888888 999999
Q ss_pred HHHHhcCChHhHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCC-hhhHHHHHhcCcHHHHHHhhcCCCccH
Q 015496 198 LGKASQNNPLVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNSSFEI 274 (405)
Q Consensus 198 Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~--~~~v~~kAl~ALS~lir~~-~~~~~~f~~~gGi~~L~~lL~s~~~~~ 274 (405)
|+.++........ -.+.+|.|+..+.++ ++.++..|+.+|+.+++.. +.....+. ...++.+..+++++..+.
T Consensus 113 i~~ia~~~~~~~~---w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~ 188 (462)
T 1ibr_B 113 VAGIACAEIPVNQ---WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSN 188 (462)
T ss_dssp HHHHHHHHGGGTC---CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCH
T ss_pred HHHHHHHhccccc---cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCH
Confidence 9999975211101 137899999999988 8889999999999999865 22211111 135678888888752257
Q ss_pred HHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496 275 RLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (405)
Q Consensus 275 kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~ 337 (405)
.+|..|+.++.+++..-.++... ......+++.+..++.++|.+++..++.+|..++..
T Consensus 189 ~vr~~a~~~l~~~~~~~~~~~~~----~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~ 247 (462)
T 1ibr_B 189 NVKLAATNALLNSLEFTKANFDK----ESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSL 247 (462)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHTS----HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 78999999999976320000000 001112467777788888999999999999998854
No 68
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.83 E-value=0.00067 Score=71.80 Aligned_cols=163 Identities=11% Similarity=-0.022 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015496 147 LEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (405)
Q Consensus 147 ~e~k~~AL~~L~~Lve-~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL 225 (405)
...|..++..+-++.- ..|. .-|+..+++++.+++.++|....-.+...+..+|+.... ++..|.+-+
T Consensus 48 ~~~k~~~l~kli~~~~~G~d~------~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l-----~in~l~kDL 116 (618)
T 1w63_A 48 NTYRCRNVAKLLYMHMLGYPA------HFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL-----MTNCIKNDL 116 (618)
T ss_dssp TTTHHHHHHHHHHHHHTTCCC------GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCC------cchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH-----HHHHHHHhc
Confidence 3457777777776432 2232 237888889999999999999999999999888764433 467888889
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh
Q 015496 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (405)
Q Consensus 226 ~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~ 305 (405)
.++++.+|..|+.+||++. .+.... ..++.+..+|.++ +..+|++|+.++..++.. +|+. .
T Consensus 117 ~~~n~~vr~lAL~~L~~i~--~~~~~~-----~l~~~l~~~L~~~--~~~VRk~A~~al~~l~~~-----~p~~----v- 177 (618)
T 1w63_A 117 NHSTQFVQGLALCTLGCMG--SSEMCR-----DLAGEVEKLLKTS--NSYLRKKAALCAVHVIRK-----VPEL----M- 177 (618)
T ss_dssp SCSSSHHHHHHHHHHHHHC--CHHHHH-----HHHHHHHHHHHSC--CHHHHHHHHHHHHHHHHH-----CGGG----G-
T ss_pred CCCCHhHHHHHHHHHHhcC--CHHHHH-----HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHH-----ChHH----H-
Confidence 9989999999999999995 233222 3467888889876 678999999999999863 3332 2
Q ss_pred CCcHHHHHHhccCCChHHHHHHHHHHHHHhcCCh
Q 015496 306 RFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 339 (405)
Q Consensus 306 ~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~ 339 (405)
.++++.+..+|...|+.++..|+.+|..+.....
T Consensus 178 ~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~ 211 (618)
T 1w63_A 178 EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSP 211 (618)
T ss_dssp GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhCh
Confidence 2688889999999999999999999999987543
No 69
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.79 E-value=6.5e-05 Score=80.77 Aligned_cols=196 Identities=12% Similarity=0.145 Sum_probs=131.1
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCch-hHHHhcCCHHHHHHhcCC---------------CCHHHHHHH
Q 015496 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNA-NDLSKLGGLSVLVGQLNH---------------PDTDIRKIS 194 (405)
Q Consensus 131 ~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA-~~~~~~Ggi~~Lv~lL~s---------------~~~~Ir~~A 194 (405)
.+|...+..+.+.+.+.+.|..+++.+..++...... ..+. ...+|+++..|.. ....+|..+
T Consensus 498 ~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~ 576 (861)
T 2bpt_A 498 ALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETS-ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNI 576 (861)
T ss_dssp HHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHH-HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHH-HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHH
Confidence 5566666777654433466777888888877654322 1111 1356777776642 246789999
Q ss_pred HHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCcc
Q 015496 195 AWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFE 273 (405)
Q Consensus 195 a~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~-~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~ 273 (405)
+.+|+++++..+..-...+ ...++.++.++++.+. .++..++.++++++.........++. ..++.|...++++ +
T Consensus 577 ~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~--~ 652 (861)
T 2bpt_A 577 LTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV--D 652 (861)
T ss_dssp HHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT--T
T ss_pred HHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccc--c
Confidence 9999999987553111111 2467888888887766 78999999999998765443333322 3678888888654 4
Q ss_pred HHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC--ChHHHHHHHHHHHHHhcC
Q 015496 274 IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQL 337 (405)
Q Consensus 274 ~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~--D~~v~E~al~aL~~L~~~ 337 (405)
..++..++.++.+++.. ..+...+.+ ..+++.+...+.++ |.++++.++.+++.++..
T Consensus 653 ~~vr~~a~~~l~~l~~~----~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~ 712 (861)
T 2bpt_A 653 SPVSITAVGFIADISNS----LEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFGDIASN 712 (861)
T ss_dssp SHHHHHHHHHHHHHHHH----TGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----hchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHH
Confidence 56899999999999863 222222222 35777778888765 488999999999998853
No 70
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.79 E-value=0.00037 Score=65.30 Aligned_cols=149 Identities=14% Similarity=0.200 Sum_probs=119.8
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 015496 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (405)
Q Consensus 175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f 254 (405)
-+..|+.+|...++.++.+|..+|..+-..-|.......=...++.++.+++++++.+..+|+.+|..++.+.|..-+.|
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y 113 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF 113 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence 35567778888899999999999999998765555555556789999999999999999999999999999988888877
Q ss_pred HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHH
Q 015496 255 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334 (405)
Q Consensus 255 ~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L 334 (405)
.. ....|..+++++ +.-++..|+-.+.-| .- ..+ ..+++..+..++.+.|..++..+++++.++
T Consensus 114 ~K--l~~aL~dlik~~--~~il~~eaae~Lgkl-kv----~~~-------~~~V~~~l~sLl~Skd~~vK~agl~~L~ei 177 (265)
T 3b2a_A 114 LK--AAKTLVSLLESP--DDMMRIETIDVLSKL-QP----LED-------SKLVRTYINELVVSPDLYTKVAGFCLFLNM 177 (265)
T ss_dssp HH--HHHHHHHHTTSC--CHHHHHHHHHHHHHC-CB----SCC-------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHhcCC--CchHHHHHHHHhCcC-Cc----ccc-------hHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 65 356788888866 455778888877776 10 111 235777888899999999999999999999
Q ss_pred hcCCh
Q 015496 335 LQLRT 339 (405)
Q Consensus 335 ~~~~~ 339 (405)
+..++
T Consensus 178 a~~S~ 182 (265)
T 3b2a_A 178 LNSSA 182 (265)
T ss_dssp GGGCS
T ss_pred hcccC
Confidence 98654
No 71
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.77 E-value=0.00074 Score=76.43 Aligned_cols=216 Identities=15% Similarity=0.161 Sum_probs=142.6
Q ss_pred hHHHHHHHHHHcCCC------C-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC
Q 015496 113 RQMEIKELMEKLKTP------S-DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH 185 (405)
Q Consensus 113 r~~~L~~a~~~~~~~------~-d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s 185 (405)
|+.-...+.+.+..+ . ....+...++.+.+ .+.+.|..|+..|..+++.... ..+. ..++.|+..|.+
T Consensus 23 R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d--~~~~vR~~A~~~L~~l~~~~~~-~~~~--~i~~~Ll~~l~d 97 (1230)
T 1u6g_C 23 RFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED--KNGEVQNLAVKCLGPLVSKVKE-YQVE--TIVDTLCTNMLS 97 (1230)
T ss_dssp HHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHHHTTSCH-HHHH--HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhCCH-HHHH--HHHHHHHHHhcC
Confidence 554445555544321 1 33667777888874 3678888999999998876643 2222 247778888888
Q ss_pred CCHHHHHHHHHHHHHHhcCChHh------HHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC
Q 015496 186 PDTDIRKISAWILGKASQNNPLV------QKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 258 (405)
Q Consensus 186 ~~~~Ir~~Aa~~Lg~~aqNN~~~------Q~~vle~G~lp~Ll~LL~-s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~g 258 (405)
+++.+|..|+.+|+.++..-+.. +... -...+|.|+..+. +++..++..|+.+++.++...+.....+. ..
T Consensus 98 ~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~-~~ 175 (1230)
T 1u6g_C 98 DKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH-PS 175 (1230)
T ss_dssp SSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH-HH
T ss_pred CcHHHHHHHHHHHHHHHHhCCCcccccchHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHH-HH
Confidence 89999999999999999754432 1112 2357899999998 47788999999999999865433211111 23
Q ss_pred cHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhc---------------cC-CCCcch---------------hHHh--
Q 015496 259 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE---------------NM-HKVEPP---------------LFRD-- 305 (405)
Q Consensus 259 Gi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~---------------~~-~~~~~~---------------~l~~-- 305 (405)
.++.|...+.++ +..+|..|+.++..++....+ .. ++..+. .+..
T Consensus 176 ll~~l~~~L~~~--~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l 253 (1230)
T 1u6g_C 176 ILTCLLPQLTSP--RLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYL 253 (1230)
T ss_dssp HHHHHGGGGGCS--SHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSC
T ss_pred HHHHHHHHHcCC--cHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 456777777765 567899999999888753100 00 001110 1111
Q ss_pred CCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496 306 RFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (405)
Q Consensus 306 ~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~ 337 (405)
..+++.+...+..++.++++.++.++..++..
T Consensus 254 ~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 254 EKIIPLVVKFCNVDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 35677777778778888999999999888764
No 72
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.69 E-value=0.0015 Score=69.28 Aligned_cols=167 Identities=16% Similarity=0.035 Sum_probs=128.6
Q ss_pred CCCHHHHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHH
Q 015496 144 TLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM 222 (405)
Q Consensus 144 ~~t~e~k~~AL~~L~~Lve-~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll 222 (405)
..+...|..++..+-++.- ..|. .-|+..+++++.+++..+|..+--.+...+..+|+.-.. ++..+.
T Consensus 49 ~~~~~~k~~~l~Kli~l~~~G~d~------s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~ 117 (621)
T 2vgl_A 49 ALDGYSKKKYVCKLLFIFLLGHDI------DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL-----INNAIK 117 (621)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSCCC------CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCC------chhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHH
Confidence 3467788888777776532 1221 247899999999999999999999999999988865433 356777
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhh--cCCCccHHHHHHHHHHHHHHhhchhccCCCCcc
Q 015496 223 KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL--GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP 300 (405)
Q Consensus 223 ~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL--~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~ 300 (405)
+=+.++++-+|.-|+.+||++. .+...+. -++.+..++ .+. ++.+|++|+.++..+... +|+.
T Consensus 118 kDl~~~n~~ir~lALr~L~~i~--~~e~~~~-----l~~~v~~~l~~~d~--~~~VRK~A~~al~kl~~~-----~p~~- 182 (621)
T 2vgl_A 118 NDLASRNPTFMGLALHCIANVG--SREMAEA-----FAGEIPKILVAGDT--MDSVKQSAALCLLRLYRT-----SPDL- 182 (621)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHC--CHHHHHH-----HTTHHHHHHHCSSS--CHHHHHHHHHHHHHHHHH-----CGGG-
T ss_pred HhcCCCCHHHHHHHHHHhhccC--CHHHHHH-----HHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHHh-----Chhh-
Confidence 7888888999999999999993 3443332 357788888 543 788999999999999863 3322
Q ss_pred hhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015496 301 PLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (405)
Q Consensus 301 ~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~ 338 (405)
+...++++.+.++|...|+.++..|+.++..+....
T Consensus 183 --~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~ 218 (621)
T 2vgl_A 183 --VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN 218 (621)
T ss_dssp --CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred --cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence 222589999999999889999999999999998643
No 73
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.69 E-value=0.00084 Score=72.21 Aligned_cols=200 Identities=15% Similarity=0.085 Sum_probs=136.0
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCch--hHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH
Q 015496 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNA--NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPL 207 (405)
Q Consensus 130 ~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA--~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~ 207 (405)
..++...+..+.+++.+.+.+..|+..|..+++.+... ........++.+..++.++++++|..|+++++.++...++
T Consensus 171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 250 (876)
T 1qgr_A 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 250 (876)
T ss_dssp HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHH
Confidence 34555566666665446788888999998877644311 1111112466777788888999999999999999988776
Q ss_pred hHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh-----------------HHHHHh---cCcHHHHHHhh
Q 015496 208 VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-----------------QEMFYV---EAGDLMLQDIL 267 (405)
Q Consensus 208 ~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~-----------------~~~f~~---~gGi~~L~~lL 267 (405)
.-...+....++.++..+.+.++.++..|+..++++++..... ...+.. ...++.+...+
T Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l 330 (876)
T 1qgr_A 251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (876)
T ss_dssp GCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHh
Confidence 5444444478899999888888899999999999887642100 000100 12355666666
Q ss_pred cCC-----CccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015496 268 GNS-----SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (405)
Q Consensus 268 ~s~-----~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~ 338 (405)
... ..+.++|+-|..++..++..- .+ .+. ..+++.+...+.+.+..+++.++.+++.++.+.
T Consensus 331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~----~~----~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~ 397 (876)
T 1qgr_A 331 TKQDENDDDDDWNPCKAAGVCLMLLATCC----ED----DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGP 397 (876)
T ss_dssp TCCCSSCCTTCCCHHHHHHHHHHHHHHHH----GG----GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS
T ss_pred hcccccccccccHHHHHHHHHHHHHHHHC----cH----hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCC
Confidence 421 124467888999999998531 11 122 256777788888889999999999999998754
No 74
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.67 E-value=0.0007 Score=62.34 Aligned_cols=147 Identities=8% Similarity=0.102 Sum_probs=109.2
Q ss_pred HHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHccCCCCchhHHHh--cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 015496 130 AQLIQIAIDDLN-NSTLSLEDSQRALQELLILVEPIDNANDLSK--LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP 206 (405)
Q Consensus 130 ~~lmk~al~~L~-~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~--~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~ 206 (405)
.+++......+. +. ....+..|+..+..++..... .|.. ...+|+++..+..+++.+|..|+.+|.+++.+.+
T Consensus 55 ~~i~~~L~~~l~kd~--~~~V~~~a~~~l~~la~~l~~--~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~ 130 (242)
T 2qk2_A 55 GALVSALKKVITKDS--NVVLVAMAGKCLALLAKGLAK--RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS 130 (242)
T ss_dssp HHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHHGG--GGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC
Confidence 355555556664 43 567788888888888754422 2222 2368899999999999999999999999998654
Q ss_pred HhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-hhh-HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHH
Q 015496 207 LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN-LAG-QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLV 284 (405)
Q Consensus 207 ~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~-~~~-~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lL 284 (405)
.. ..+|.|+..+++.++.+|..++..|+.++..+ +.. ....+ ..-++.|..++.+. +.++|..|..++
T Consensus 131 -~~------~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l-~~l~p~l~~~l~D~--~~~VR~~A~~~l 200 (242)
T 2qk2_A 131 -LE------AQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL-KLLTTSLVKTLNEP--DPTVRDSSAEAL 200 (242)
T ss_dssp -HH------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH-HHHHHHHHHHHTSS--CHHHHHHHHHHH
T ss_pred -HH------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH-HHHHHHHHHHhcCC--ChHHHHHHHHHH
Confidence 21 35788999999988999999999999977665 321 12222 25678999999875 677999999999
Q ss_pred HHHhhc
Q 015496 285 GDLAKC 290 (405)
Q Consensus 285 s~L~~~ 290 (405)
..++..
T Consensus 201 ~~l~~~ 206 (242)
T 2qk2_A 201 GTLIKL 206 (242)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999853
No 75
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.46 E-value=0.013 Score=58.19 Aligned_cols=187 Identities=11% Similarity=0.076 Sum_probs=132.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 015496 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP 206 (405)
Q Consensus 127 ~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~ 206 (405)
++....++++ ..++++..++.-+..++..+.++.-.-+.=....-...+..+++++.+++..+|...--.+-+++.-++
T Consensus 22 ~~k~~v~qe~-r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~ 100 (355)
T 3tjz_B 22 LEKSAVLQEA-RVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAE 100 (355)
T ss_dssp CCHHHHHHHG-GGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSS
T ss_pred chHHHHHHHH-HHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHH
Confidence 4445556663 566666666554455666666654332211111112346777889999999999999999988887633
Q ss_pred HhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 015496 207 LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGD 286 (405)
Q Consensus 207 ~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~ 286 (405)
+.+ =++..|.+=++++++-+|..|+.++|++.- +...+. ..+.+.++|.+. ++.+|++|+.+...
T Consensus 101 ---e~i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~~-----l~~~lk~~L~d~--~pyVRk~A~l~~~k 165 (355)
T 3tjz_B 101 ---DVI---IVTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQA-----IERYMKQAIVDK--VPSVSSSALVSSLH 165 (355)
T ss_dssp ---CGG---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHHH-----HHHHHHHHHTCS--SHHHHHHHHHHHHH
T ss_pred ---HHH---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHHH-----HHHHHHHHcCCC--CHHHHHHHHHHHHH
Confidence 223 257788888888899999999999999952 333333 346788888886 67899999999999
Q ss_pred HhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCCh
Q 015496 287 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 339 (405)
Q Consensus 287 L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~ 339 (405)
|+. ..| .+++ +|+..+-+++...++-++-+|+.+|..+...+.
T Consensus 166 L~~-----~~p----e~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~ 208 (355)
T 3tjz_B 166 LLK-----CSF----DVVK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR 208 (355)
T ss_dssp HTT-----TCH----HHHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH
T ss_pred Hhc-----cCH----HHHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch
Confidence 984 233 2443 699999999999999999999999999887543
No 76
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.34 E-value=0.03 Score=50.81 Aligned_cols=188 Identities=13% Similarity=0.181 Sum_probs=132.3
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhH
Q 015496 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQ 209 (405)
Q Consensus 131 ~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL-~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q 209 (405)
+.+++.+..|.+.-.+ .+..|+..+..+.+....+-. -.+..|+-++ ++..-++-..-+.++|.++.-||+.-
T Consensus 32 ~~l~~lI~~LDDDlwt--V~kNAl~vi~~i~~~~~el~e----pl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v 105 (253)
T 2db0_A 32 SVLKKLIELLDDDLWT--VVKNAISIIMVIAKTREDLYE----PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV 105 (253)
T ss_dssp HHHHHHHHHTTCSCHH--HHHHHHHHHHHHHTTCGGGHH----HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhccHHHH--HHHhHHHHHHHHHHHhHHHHH----HHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH
Confidence 3445555555554322 355677777776665532111 0234455555 36778887888999999999999766
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496 210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 210 ~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~ 289 (405)
. +.+|.|..-..-+++..+..--|+|.-|.|.||.....+ +.-+..++.+++.. =+.-|+.+++.+..
T Consensus 106 ~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v-----~rdi~smltskd~~--Dkl~aLnFi~alGe 173 (253)
T 2db0_A 106 K-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASI-----VRDFMSMLSSKNRE--DKLTALNFIEAMGE 173 (253)
T ss_dssp H-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHTSCSSHH--HHHHHHHHHHTCCT
T ss_pred H-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHH-----HHHHHHHhcCCChH--HHHHHHHHHHHHhc
Confidence 5 456999999998899999999999999999999765443 45566778876322 34467777776643
Q ss_pred chhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 015496 290 CQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLK 346 (405)
Q Consensus 290 ~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~ 346 (405)
++ ...+ .-++|.|..+|..+|.-++.-|..+|.+++..++.-|..+.
T Consensus 174 n~--------~~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~ 220 (253)
T 2db0_A 174 NS--------FKYV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI 220 (253)
T ss_dssp TT--------HHHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred cC--------cccc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH
Confidence 21 1122 46899999999999999999999999999988766555554
No 77
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.0058 Score=57.25 Aligned_cols=174 Identities=9% Similarity=0.104 Sum_probs=117.1
Q ss_pred HhHHHHHHHHH-HcCC-------CCH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCC--chh-HHHhcCCHHHH
Q 015496 112 KRQMEIKELME-KLKT-------PSD-AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPID--NAN-DLSKLGGLSVL 179 (405)
Q Consensus 112 ~r~~~L~~a~~-~~~~-------~~d-~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iD--nA~-~~~~~Ggi~~L 179 (405)
+|++-+..+.. .+.+ ..+ .+++......+.+. .....+..|+..+..+++... .-. .+.. -.+|++
T Consensus 32 eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D-~n~~v~~~A~~al~~la~~l~~~~f~~~y~~-~llp~l 109 (249)
T 2qk1_A 32 DRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKD-ANIQAVALAAQSVELICDKLKTPGFSKDYVS-LVFTPL 109 (249)
T ss_dssp HHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHHCTTTSCHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHhcccccccHHHHH-HHHHHH
Confidence 36666665555 3321 122 35566666666322 245667788888888775432 111 2222 258899
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH---Hh
Q 015496 180 VGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF---YV 256 (405)
Q Consensus 180 v~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f---~~ 256 (405)
+..+....+.||..|..++-+++.+-+.....-.=...++.|+..+++.+..+|..++..|+.++...+..-..| +.
T Consensus 110 l~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~ 189 (249)
T 2qk1_A 110 LDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLK 189 (249)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHH
Confidence 999998899999999999999987542110000001267889999999889999999999999998765421232 22
Q ss_pred cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496 257 EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 257 ~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~ 289 (405)
-.-++.|..++.+. +..+|..|..++..++.
T Consensus 190 ~~iip~l~~~l~D~--~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 190 DEVVPIVIQIVNDT--QPAIRTIGFESFAILIK 220 (249)
T ss_dssp TTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHH
Confidence 46789999999875 67799999999999985
No 78
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.21 E-value=0.0087 Score=58.76 Aligned_cols=153 Identities=14% Similarity=0.093 Sum_probs=118.0
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh-c
Q 015496 179 LVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV-E 257 (405)
Q Consensus 179 Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~-~ 257 (405)
++.-|.+.+..-+..|..-|..+.|.....-..|++.+|+..|+++..+.+.+....++.|++++.- +..+.+.+++ .
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~-~v~Gm~gvvs~~ 201 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML-FVDGMLGVVAHS 201 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT-SHHHHHHHHHCH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh-ccccccchhCCH
Confidence 4444556677778899999999777767777889999999999999999888999999999999975 6677777775 3
Q ss_pred CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh----------CCcHHHHHHhcc---CCChHHH
Q 015496 258 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD----------RFFLKSVVDLTA---SADLDLQ 324 (405)
Q Consensus 258 gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~----------~g~l~~Lv~LL~---~~D~~v~ 324 (405)
..+..|..++.+. +..+.+.|+.+|-.++.. ++.....+.+ ..-...|+.+|. +.|.+++
T Consensus 202 ~fI~~lyslv~s~--~~~V~k~AL~LL~v~V~~-----se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq 274 (339)
T 3dad_A 202 DTIQWLYTLCASL--SRLVVKTALKLLLVFVEY-----SENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELL 274 (339)
T ss_dssp HHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHH
T ss_pred HHHHHHHHHHcCc--cHHHHHHHHHHHHHHHcc-----CcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHH
Confidence 5788888888864 678889999999999863 2222222221 124778999997 6799999
Q ss_pred HHHHHHHHHHhcCCh
Q 015496 325 EKALAAIKNLLQLRT 339 (405)
Q Consensus 325 E~al~aL~~L~~~~~ 339 (405)
.+|+..|-.+....+
T Consensus 275 ~~amtLIN~lL~~ap 289 (339)
T 3dad_A 275 VYTVTLINKTLAALP 289 (339)
T ss_dssp HHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhcCC
Confidence 999988887776543
No 79
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.15 E-value=0.0052 Score=65.14 Aligned_cols=129 Identities=12% Similarity=0.125 Sum_probs=99.3
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015496 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (405)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL 225 (405)
+.+.|..+.-.+..+.+.- .++.-+ .+..+.+-|+++++-+|..|..+|+++. +|+.-+ ..+|.+.+++
T Consensus 87 ~~~~Krl~YL~l~~~~~~~---~e~~~L-~iN~l~kDl~~~n~~ir~lALr~L~~i~--~~e~~~-----~l~~~v~~~l 155 (621)
T 2vgl_A 87 RYTEKQIGYLFISVLVNSN---SELIRL-INNAIKNDLASRNPTFMGLALHCIANVG--SREMAE-----AFAGEIPKIL 155 (621)
T ss_dssp CHHHHHHHHHHHHHSCCCC---HHHHHH-HHHHHHHHHHSCCHHHHHHHHHHHHHHC--CHHHHH-----HHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHccCC---cHHHHH-HHHHHHHhcCCCCHHHHHHHHHHhhccC--CHHHHH-----HHHHHHHHHH
Confidence 5678887877788776442 222211 3556667788999999999999999996 455444 3568899999
Q ss_pred --cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496 226 --KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (405)
Q Consensus 226 --~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~ 290 (405)
.+.++-||.+|+.|+..+.+.+|.... ..+.++.|..+|.+. +..++..|+.++..++..
T Consensus 156 ~~~d~~~~VRK~A~~al~kl~~~~p~~~~---~~~~~~~l~~lL~d~--d~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 156 VAGDTMDSVKQSAALCLLRLYRTSPDLVP---MGDWTSRVVHLLNDQ--HLGVVTAATSLITTLAQK 217 (621)
T ss_dssp HCSSSCHHHHHHHHHHHHHHHHHCGGGCC---CCSCHHHHHHHTTCS--CHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHHHHHHHhChhhcC---chhHHHHHHHHhCCC--CccHHHHHHHHHHHHHHh
Confidence 778899999999999999998876443 136789999999765 678999999999999863
No 80
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.021 Score=53.69 Aligned_cols=180 Identities=12% Similarity=0.034 Sum_probs=117.2
Q ss_pred CHHHHHHHHHHHHHccCCCCc---hh-HHHhcCCHHH-HHHhcCCCCHHHHHHHHHHHHHHhcCChH-----hHHHHHHc
Q 015496 146 SLEDSQRALQELLILVEPIDN---AN-DLSKLGGLSV-LVGQLNHPDTDIRKISAWILGKASQNNPL-----VQKQVLEL 215 (405)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDn---A~-~~~~~Ggi~~-Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~-----~Q~~vle~ 215 (405)
.=..|..|++.|..++..... .+ .+...+-+.. +-..+...|..++..|+.+|..++..-.. ......-.
T Consensus 22 ~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~ 101 (278)
T 4ffb_C 22 LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLIS 101 (278)
T ss_dssp SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHH
Confidence 346788899988887754321 11 1222344444 44678889999999999999998864221 11111223
Q ss_pred CcHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhcc
Q 015496 216 GALSKLMK-MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 294 (405)
Q Consensus 216 G~lp~Ll~-LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~ 294 (405)
..+|.|+. .+.+....++..|+.++..++....+... .++.+...+++. +++++..++..|..+....
T Consensus 102 ~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~------~~e~l~~~l~~K--npkv~~~~l~~l~~~l~~f--- 170 (278)
T 4ffb_C 102 TWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ------SVELVIPFFEKK--LPKLIAAAANCVYELMAAF--- 170 (278)
T ss_dssp HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH------HHHHHGGGGGCS--CHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH------HHHHHHHHHhcc--CHHHHHHHHHHHHHHHHHh---
Confidence 56788885 47787888898898888887754332211 135666677765 6889999999999887532
Q ss_pred CCCCcch-hHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496 295 MHKVEPP-LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (405)
Q Consensus 295 ~~~~~~~-~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~ 337 (405)
...... ...-..+++.+..+|.+.|.+||+.|..++..+...
T Consensus 171 -g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 171 -GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp -TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred -CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 111110 111123566788889999999999999999988764
No 81
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.75 E-value=0.066 Score=48.63 Aligned_cols=140 Identities=16% Similarity=0.189 Sum_probs=106.8
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 015496 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (405)
Q Consensus 175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f 254 (405)
.+|.+..-+.-.++.+|..-..+|+.++.+||..-..+ +.-+..++.+++..-+..|+.-|+.+--+++....
T Consensus 108 vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v-----~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~-- 180 (253)
T 2db0_A 108 MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASI-----VRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVN-- 180 (253)
T ss_dssp HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHG--
T ss_pred hHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHH-----HHHHHHHhcCCChHHHHHHHHHHHHHhccCccccC--
Confidence 45666666677899999999999999999999887655 46788999988876788889888888666554333
Q ss_pred HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHH
Q 015496 255 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334 (405)
Q Consensus 255 ~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L 334 (405)
.-++-|..+|.++ +.-+|..|+-++.+|+. .+|..++ ++..-++=++..+..++.++-.+|+.|
T Consensus 181 ---PfLprL~aLL~D~--deiVRaSaVEtL~~lA~-----~npklRk------ii~~kl~e~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 181 ---PFLPRIINLLHDG--DEIVRASAVEALVHLAT-----LNDKLRK------VVIKRLEELNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp ---GGHHHHHGGGGCS--SHHHHHHHHHHHHHHHT-----SCHHHHH------HHHHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred ---cchHHHHHHHcCc--chhhhHHHHHHHHHHHH-----cCHHHHH------HHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 3468999999987 56689999999999995 3443222 334445556777788999999898887
Q ss_pred hcC
Q 015496 335 LQL 337 (405)
Q Consensus 335 ~~~ 337 (405)
+-.
T Consensus 245 ~l~ 247 (253)
T 2db0_A 245 LLL 247 (253)
T ss_dssp HHC
T ss_pred HHH
Confidence 754
No 82
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.38 E-value=0.12 Score=57.39 Aligned_cols=152 Identities=14% Similarity=0.129 Sum_probs=99.8
Q ss_pred CHHHHHHhcC-CCCHHHHHHHHHHHHHHhc--CChHhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhh
Q 015496 175 GLSVLVGQLN-HPDTDIRKISAWILGKASQ--NNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAG 250 (405)
Q Consensus 175 gi~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aq--NN~~~Q~~vle~G~lp~Ll~LL~s-~~~~v~~kAl~ALS~lir~~~~~ 250 (405)
.++.+++.|. +.++-+|..|+.++|-+.- +|+ .+|..|++.+.+ .++.+|..|+.+|+-+.-+.+..
T Consensus 542 ~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~---------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 542 LADDLITKMLASDESLLRYGGAFTIALAYAGTGNN---------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH---------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH---------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHH
Confidence 4666777664 5677788877777764443 343 235666666544 45788999999999876555432
Q ss_pred HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHH
Q 015496 251 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAA 330 (405)
Q Consensus 251 ~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~a 330 (405)
++.++..|... .+.-+|+-|++++.-++.+ ++ ...++..|..++...|.+|+..|+.+
T Consensus 613 ---------v~rlv~~L~~~-~d~~VR~gAalALGli~aG-----n~-------~~~aid~L~~L~~D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 613 ---------VPRIVQLLSKS-HNAHVRCGTAFALGIACAG-----KG-------LQSAIDVLDPLTKDPVDFVRQAAMIA 670 (963)
T ss_dssp ---------HHHHTTTGGGC-SCHHHHHHHHHHHHHHTSS-----SC-------CHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred ---------HHHHHHHHHhc-CCHHHHHHHHHHHHHhccC-----CC-------cHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 34445544433 3678999999999998743 22 12356677777888899999999999
Q ss_pred HHHHhcCChhhHHHHHhcCCchHHHHHHHHHHHHhh
Q 015496 331 IKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVM 366 (405)
Q Consensus 331 L~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~~~~l~ 366 (405)
|+.+..+..+ ...|++..++.++....
T Consensus 671 LG~Ig~gtnn---------a~~~rva~~l~~L~~~~ 697 (963)
T 4ady_A 671 LSMILIQQTE---------KLNPQVADINKNFLSVI 697 (963)
T ss_dssp HHHHSTTCCT---------TTCTTHHHHHHHHHHHH
T ss_pred HHHHhcCCcc---------ccchHHHHHHHHHHHHH
Confidence 9999876433 22234555555554444
No 83
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=95.93 E-value=0.46 Score=47.31 Aligned_cols=168 Identities=17% Similarity=0.118 Sum_probs=116.0
Q ss_pred HHHHHHHHHcc--CCCCchhHHHhcCCHHHHHHhcC-----------CCCHHHHHHHHHHHHHHhcCChHhHHHHHHc-C
Q 015496 151 QRALQELLILV--EPIDNANDLSKLGGLSVLVGQLN-----------HPDTDIRKISAWILGKASQNNPLVQKQVLEL-G 216 (405)
Q Consensus 151 ~~AL~~L~~Lv--e~iDnA~~~~~~Ggi~~Lv~lL~-----------s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~-G 216 (405)
...+..|+-.+ .+++.-..|+ .+|+..|+..|. ..+..++.....||..+. ||..--+.++++ .
T Consensus 85 ~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N~~~G~~~vl~~~~ 162 (383)
T 3eg5_B 85 LSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEE 162 (383)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-SSHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-cchhhHHHHHcChH
Confidence 34566666644 4568888998 889999999884 124578889999999888 667677777765 7
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-hh-HHHHHh----------cCcHHHHHHhhcCCCccHHHHHHHHHHH
Q 015496 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL-AG-QEMFYV----------EAGDLMLQDILGNSSFEIRLHRKAVSLV 284 (405)
Q Consensus 217 ~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~-~~-~~~f~~----------~gGi~~L~~lL~s~~~~~kl~~kA~~lL 284 (405)
++..|...+.+..+.++..|+--|+.+|--.. .+ ...+++ ..-+..++..|.+. .+..++..+..+|
T Consensus 163 ~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~-~~~e~~~~~m~lI 241 (383)
T 3eg5_B 163 GILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIALKVGCLQLI 241 (383)
T ss_dssp HHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT-SCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHcc-CcHHHHHHHHHHH
Confidence 88999999999888888888877777665432 22 333321 23478888989875 4677888899999
Q ss_pred HHHhhchhccCCC----CcchhHHhCCcHHHHHHhccCCChHHH
Q 015496 285 GDLAKCQLENMHK----VEPPLFRDRFFLKSVVDLTASADLDLQ 324 (405)
Q Consensus 285 s~L~~~~~~~~~~----~~~~~l~~~g~l~~Lv~LL~~~D~~v~ 324 (405)
..++.+. ++- ..+..|...|+.+.+-.+=...+.++.
T Consensus 242 N~li~~~---~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~ 282 (383)
T 3eg5_B 242 NALITPA---EELDFRVHIRSELMRLGLHQVLQELREIENEDMK 282 (383)
T ss_dssp HHHHTTC---CCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHHH
T ss_pred HHHHcCC---CCHHHHHHHHHHHHHCChHHHHHHHhcCCChhHH
Confidence 9988531 111 133456677888877764333454443
No 84
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=95.87 E-value=0.77 Score=45.32 Aligned_cols=157 Identities=8% Similarity=0.020 Sum_probs=105.1
Q ss_pred HhHHHHHHHHHHcC-CCC-HH----HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC
Q 015496 112 KRQMEIKELMEKLK-TPS-DA----QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH 185 (405)
Q Consensus 112 ~r~~~L~~a~~~~~-~~~-d~----~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s 185 (405)
+.++-+++++-.+. |.+ .. .+.-..++.+.+. +.+.|.-..--+..+....+.+- =....|.+-+++
T Consensus 43 kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~--d~~lKrLvYLyl~~~~~~~~e~i-----Lv~Nsl~kDl~~ 115 (355)
T 3tjz_B 43 KCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSN--DPTLRRMCYLTIKEMSCIAEDVI-----IVTSSLTKDMTG 115 (355)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCC--CHHHHHHHHHHHHHHTTTSSCGG-----GGHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhCCCHHHHH-----HHHHHHHhhcCC
Confidence 45667777765542 322 11 1222223344443 56677666666666554433221 146677788889
Q ss_pred CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHH
Q 015496 186 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQD 265 (405)
Q Consensus 186 ~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~ 265 (405)
+++-+|..|.++++++.. |+.-+. ..+.+-+.+.+.++-||.+|+.+...+++.+|+..+ +.++-+..
T Consensus 116 ~N~~iR~lALRtL~~I~~--~~m~~~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~~~~l~~ 183 (355)
T 3tjz_B 116 KEDSYRGPAVRALCQITD--STMLQA-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK-----RWVNEAQE 183 (355)
T ss_dssp SCHHHHHHHHHHHHHHCC--TTTHHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHH
T ss_pred CcHhHHHHHHHHHhcCCC--HHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHHH
Confidence 999999999999999985 333332 456788888888999999999999999988887544 45677788
Q ss_pred hhcCCCccHHHHHHHHHHHHHHhh
Q 015496 266 ILGNSSFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 266 lL~s~~~~~kl~~kA~~lLs~L~~ 289 (405)
++.+. +.-++-.|+.++..++.
T Consensus 184 ll~d~--n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 184 AASSD--NIMVQYHALGLLYHVRK 205 (355)
T ss_dssp HTTCS--SHHHHHHHHHHHHHHHT
T ss_pred HhcCC--CccHHHHHHHHHHHHHh
Confidence 88765 56677888888888774
No 85
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=95.59 E-value=2.1 Score=42.54 Aligned_cols=241 Identities=15% Similarity=0.131 Sum_probs=129.9
Q ss_pred hccCCCCHHHHHHhHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHH
Q 015496 100 QDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVL 179 (405)
Q Consensus 100 ~~~~~~s~e~l~~r~~~L~~a~~~~~~~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~L 179 (405)
+...+||++++. +-+++.|+.++.+.+.. +.+.+. +.+.|-.-+..-..- .... ...-....--.-.
T Consensus 5 ~~~~~~se~ev~---~~F~~mL~~mnl~~ek~------~~l~~~--~~e~Kw~mi~~~~~~-~~~~-~~~~~~~~sP~~y 71 (383)
T 3eg5_B 5 QSLQDISDEQVL---VLFEQMLVDMNLNEEKQ------QPLREK--DIVIKREMVSQYLHT-SKAG-MNQKESSRSAMMY 71 (383)
T ss_dssp ----------CC---HHHHHHHHHTTCCHHHH------HHHHSS--CHHHHHHHHHHHHHH-C----------CCCHHHH
T ss_pred hhcccCCHHHHH---HHHHHHHHHcCCCHHHH------HHHHhC--CHHHHHHHHHHHHHH-hhhc-cccccCCCCHHHH
Confidence 356778887652 33477888888765433 333333 445553322211100 0000 0000111222234
Q ss_pred HHhcCCCC-HHHHHHHHHHHHHHhcCC--hHhHHHHHHcCcHHHHHHhhcC-----------CCHHHHHHHHHHHHHHhc
Q 015496 180 VGQLNHPD-TDIRKISAWILGKASQNN--PLVQKQVLELGALSKLMKMVKS-----------SFVEEAVKALYTVSSLIR 245 (405)
Q Consensus 180 v~lL~s~~-~~Ir~~Aa~~Lg~~aqNN--~~~Q~~vle~G~lp~Ll~LL~s-----------~~~~v~~kAl~ALS~lir 245 (405)
+..|.+.. .+-......-|...-.++ .-++ .|. .+|+..|+.+|.. .+......++.+|.++.
T Consensus 72 i~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~-~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm- 148 (383)
T 3eg5_B 72 IQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQ-TFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM- 148 (383)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHH-HHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-
T ss_pred HHHHHhcccchhHHHHHHHHHHHHhhCccHHHH-HHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-
Confidence 55554432 111111122222222333 3333 344 7889999988852 11244567788888776
Q ss_pred CChhhHHHHHhc-CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccC-CCCcchhH------HhCCcHHHHHHhcc
Q 015496 246 NNLAGQEMFYVE-AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM-HKVEPPLF------RDRFFLKSVVDLTA 317 (405)
Q Consensus 246 ~~~~~~~~f~~~-gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~-~~~~~~~l------~~~g~l~~Lv~LL~ 317 (405)
++..+.+.++.+ +++..|..+|.++ ..+++.-|+-+++.+|....+.. .+...+++ .+..-...+++.|.
T Consensus 149 N~~~G~~~vl~~~~~i~~l~~~L~s~--~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~ 226 (383)
T 3eg5_B 149 NNKFGIKTMLETEEGILLLVRAMDPA--VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK 226 (383)
T ss_dssp SSHHHHHHHHTCSSHHHHHHHTCCTT--SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred cchhhHHHHHcChHHHHHHHHHhCCC--chHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 667788888774 6789999999876 67889999999999996410000 11111111 22344566888888
Q ss_pred C-CChHHHHHHHHHHHHHhcCChhh------HHHHHhcCCchHHHHHHH
Q 015496 318 S-ADLDLQEKALAAIKNLLQLRTTE------ALVLKDFCGLDTALERLR 359 (405)
Q Consensus 318 ~-~D~~v~E~al~aL~~L~~~~~~~------~~~v~~~~Gl~~~L~~L~ 359 (405)
. .+.+++..++..+-.++..+++. |..+. .+|+.+.+.+|+
T Consensus 227 ~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~-~~Gl~~il~~lr 274 (383)
T 3eg5_B 227 SGTSIALKVGCLQLINALITPAEELDFRVHIRSELM-RLGLHQVLQELR 274 (383)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH-HTTHHHHHHHHT
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCChHHHHHHHh
Confidence 7 58899999998888888876542 45566 899999999887
No 86
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.57 E-value=0.51 Score=44.79 Aligned_cols=171 Identities=12% Similarity=0.023 Sum_probs=110.4
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHH-HHHhcCCCCHHHHHHHHHHHHHHhcC----ChHhHHHHHHcCcHHH
Q 015496 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSV-LVGQLNHPDTDIRKISAWILGKASQN----NPLVQKQVLELGALSK 220 (405)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~-Lv~lL~s~~~~Ir~~Aa~~Lg~~aqN----N~~~Q~~vle~G~lp~ 220 (405)
+-..+..|++.|...+++.. ...+....++-. +.--+.++|+.+-..+..+|..+..- +......-. .-.+|.
T Consensus 59 d~k~~~~ale~L~~~l~~~~-~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea-~~~lP~ 136 (266)
T 2of3_A 59 DFKQHLAALDSLVRLADTSP-RSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEV-SAFVPY 136 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHCH-HHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH-HHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhCh-HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHH-HHHHHH
Confidence 45778888888888765421 111222222211 11122367899999999988887532 111111100 136799
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcc
Q 015496 221 LMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP 300 (405)
Q Consensus 221 Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~ 300 (405)
|+.-+.++.+.+|.++-..+-.+..-+++. ..++.+...+++. +.|.|..++..+.++.... ...
T Consensus 137 LveKlGd~k~~vR~~~r~il~~l~~v~~~~-------~v~~~l~~g~ksK--N~R~R~e~l~~l~~li~~~----G~~-- 201 (266)
T 2of3_A 137 LLLKTGEAKDNMRTSVRDIVNVLSDVVGPL-------KMTPMLLDALKSK--NARQRSECLLVIEYYITNA----GIS-- 201 (266)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHH----CSG--
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHccC--CHHHHHHHHHHHHHHHHhc----CCC--
Confidence 999998888888876655554443323321 1346677788876 5889999999999998542 111
Q ss_pred hhHHhCCcH---HHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496 301 PLFRDRFFL---KSVVDLTASADLDLQEKALAAIKNLLQL 337 (405)
Q Consensus 301 ~~l~~~g~l---~~Lv~LL~~~D~~v~E~al~aL~~L~~~ 337 (405)
....+ +.+..++...|..+|+.|++++..+...
T Consensus 202 ----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 202 ----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp ----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred ----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 13467 9999999999999999999999977654
No 87
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=95.53 E-value=0.25 Score=45.63 Aligned_cols=155 Identities=17% Similarity=0.100 Sum_probs=101.6
Q ss_pred CCCCchhHHHhcCCHHHHHHhcCC----C-------CHHHHHHHHHHHHHHhcCChHhHHHHHHc-CcHHHHHHhhcCCC
Q 015496 162 EPIDNANDLSKLGGLSVLVGQLNH----P-------DTDIRKISAWILGKASQNNPLVQKQVLEL-GALSKLMKMVKSSF 229 (405)
Q Consensus 162 e~iDnA~~~~~~Ggi~~Lv~lL~s----~-------~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~-G~lp~Ll~LL~s~~ 229 (405)
.+++....| ..||+..|+.+|.. + +..++..+..||..+. ||..--+.++.+ +++..|...|.++.
T Consensus 32 ~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~~i~~l~~~L~s~~ 109 (233)
T 2f31_A 32 NPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAV 109 (233)
T ss_dssp SCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSSHHHHHHTTCCTTS
T ss_pred CCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcHHHHHHHHHhCCCC
Confidence 356778888 57899999988752 1 4577889999998887 666666777764 68899999998888
Q ss_pred HHHHHHHHHHHHHHhcCCh-hh-HHHHHh----------cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCC
Q 015496 230 VEEAVKALYTVSSLIRNNL-AG-QEMFYV----------EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 297 (405)
Q Consensus 230 ~~v~~kAl~ALS~lir~~~-~~-~~~f~~----------~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~ 297 (405)
..++..++--|+.+|--.. .+ ...+++ ..-+..+++.+++. .+..++..+..+|..++.+. .+.
T Consensus 110 ~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~-~~~e~~~~~m~lIN~li~~~---~dl 185 (233)
T 2f31_A 110 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIALKVGCLQLINALITPA---EEL 185 (233)
T ss_dssp HHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT-SCHHHHHHHHHHHHHHHTTC---CCH
T ss_pred chHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC-ChHHHHHHHHHHHHHHHCCC---CCH
Confidence 8888877766665554332 13 333321 22456778888754 36778888888888888531 111
Q ss_pred ----CcchhHHhCCcHHHHHHhccCCChH
Q 015496 298 ----VEPPLFRDRFFLKSVVDLTASADLD 322 (405)
Q Consensus 298 ----~~~~~l~~~g~l~~Lv~LL~~~D~~ 322 (405)
..+..|...|+.+.+-.+=...+++
T Consensus 186 ~~R~~lR~ef~~~Gl~~il~~l~~~~~~~ 214 (233)
T 2f31_A 186 DFRVHIRSELMRLGLHQVLQELREIENED 214 (233)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHCChHHHHHHHhccCCHH
Confidence 1234455667766665543333333
No 88
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.04 E-value=0.7 Score=51.51 Aligned_cols=184 Identities=15% Similarity=0.169 Sum_probs=123.0
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCC--chhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc--CCh
Q 015496 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPID--NANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQ--NNP 206 (405)
Q Consensus 131 ~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iD--nA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aq--NN~ 206 (405)
.++...++.+.+.. .=..|..||+-+..+++..- .+..|- ..+|.+-.++....++|+..|..++..+|+ .|.
T Consensus 133 ~~~~~~~~~~~~~~-kw~~k~~~l~~~~~~~~~~~~~~~~~~~--~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~ 209 (986)
T 2iw3_A 133 ALLPHLTNAIVETN-KWQEKIAILAAFSAMVDAAKDQVALRMP--ELIPVLSETMWDTKKEVKAAATAAMTKATETVDNK 209 (986)
T ss_dssp HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHSHHHHHHHHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCT
T ss_pred HHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHhHHHHHHhcc--chhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCc
Confidence 34445555554432 34679999999999987541 122222 346777778888899999999999999987 455
Q ss_pred HhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC---ChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHH
Q 015496 207 LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN---NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSL 283 (405)
Q Consensus 207 ~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~---~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~l 283 (405)
++. ..+|.|++.+.+++. --+++..||+..-- ..+.... -+|+|.+.|... ...++|+++-.
T Consensus 210 d~~------~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~~-----~~p~l~r~l~~~--~~~~~r~~~~~ 274 (986)
T 2iw3_A 210 DIE------RFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLSI-----MVPLLSRGLNER--ETGIKRKSAVI 274 (986)
T ss_dssp TTG------GGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHHH-----HHHHHHHHHTSS--SHHHHHHHHHH
T ss_pred chh------hhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHHH-----HHHHHHhhhccC--cchhheeeEEE
Confidence 544 468999999988753 34578888874322 2222222 257778888765 44578999999
Q ss_pred HHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC-CChHHHHHHHHHHHHHhc
Q 015496 284 VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS-ADLDLQEKALAAIKNLLQ 336 (405)
Q Consensus 284 Ls~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~-~D~~v~E~al~aL~~L~~ 336 (405)
+-|||.=- .+|.....|. ..++|.|-+.... .|+++||.+-+|+..|..
T Consensus 275 ~~n~~~lv---~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 275 IDNMCKLV---EDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTLRR 324 (986)
T ss_dssp HHHHHTTC---CCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred Ecchhhhc---CCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 99999621 2332222222 3566666665544 599999999999999853
No 89
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=94.96 E-value=1.8 Score=44.25 Aligned_cols=217 Identities=12% Similarity=0.062 Sum_probs=123.8
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC----CchhHHHhcCCHH--HHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 015496 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPI----DNANDLSKLGGLS--VLVGQLNHPDTDIRKISAWILGKASQNN 205 (405)
Q Consensus 132 lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i----DnA~~~~~~Ggi~--~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN 205 (405)
..+-.+..+.... ..+-..-.|--+.+++... ..+.-|.+..... ++-.++..++.-..-.|+.+++-+++++
T Consensus 78 ~~~~~l~lL~~~~-~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~ 156 (480)
T 1ho8_A 78 TLIPLIHLLSTSD-NEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG 156 (480)
T ss_dssp THHHHHHHHHSCC-CHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHhhcC-hHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence 3455666666532 4454444555555665442 2234455543322 2333455555666677777777777766
Q ss_pred hHhHHHHHHcCcHH--HHHHhhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhcCc--HHHHHHhhc----CC------
Q 015496 206 PLVQKQVLELGALS--KLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--DLMLQDILG----NS------ 270 (405)
Q Consensus 206 ~~~Q~~vle~G~lp--~Ll~LL~s~-~~~v~~kAl~ALS~lir~~~~~~~~f~~~gG--i~~L~~lL~----s~------ 270 (405)
+...+..- ..+. -++..|.+. +...+--++.+++.++|. +..+..|.+++| ++++..+++ +.
T Consensus 157 ~~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~ 233 (480)
T 1ho8_A 157 LHNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIV 233 (480)
T ss_dssp TCCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred CccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence 55333221 1122 355556553 344455788899999884 677888988766 455544332 11
Q ss_pred -----CccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcH--HHHHHhccCC-ChHHHHHHHHHHHHHhcCChh--
Q 015496 271 -----SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFL--KSVVDLTASA-DLDLQEKALAAIKNLLQLRTT-- 340 (405)
Q Consensus 271 -----~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l--~~Lv~LL~~~-D~~v~E~al~aL~~L~~~~~~-- 340 (405)
+....++-.+++++--|.. +++..+.+...++. ..|+++++.. ...+...++.++.||+..+..
T Consensus 234 ~~~~~~~~~Ql~Y~~ll~iWlLSF------~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~ 307 (480)
T 1ho8_A 234 ATNSNHLGIQLQYHSLLLIWLLTF------NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQH 307 (480)
T ss_dssp -----CCHHHHHHHHHHHHHHHTT------SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTH
T ss_pred cccCCCccHHHHHHHHHHHHHHHc------CHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhh
Confidence 1135567777877777765 33455566666644 5677767653 567888888899999976421
Q ss_pred ---hHHHHHhcCCchHHHHHHH
Q 015496 341 ---EALVLKDFCGLDTALERLR 359 (405)
Q Consensus 341 ---~~~~v~~~~Gl~~~L~~L~ 359 (405)
..+.+. .+++++.+..|.
T Consensus 308 ~~~~~~~~~-~~~~l~~l~~L~ 328 (480)
T 1ho8_A 308 KKVIKQLLL-LGNALPTVQSLS 328 (480)
T ss_dssp HHHHHHHHH-HHCHHHHHHHHH
T ss_pred hhHHHHHHH-HccchHHHHHHh
Confidence 122333 344455555554
No 90
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.92 E-value=0.27 Score=54.49 Aligned_cols=137 Identities=11% Similarity=0.061 Sum_probs=95.1
Q ss_pred HHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 015496 176 LSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV-KSSFVEEAVKALYTVSSLIRNNLAGQEM 253 (405)
Q Consensus 176 i~~Lv~lL-~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL-~s~~~~v~~kAl~ALS~lir~~~~~~~~ 253 (405)
+..|+..+ ++.+..+|..|+..||-++.++| ..++.++.+| ++.++.+|..|.+|||-+..+++. .
T Consensus 579 Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-~-- 646 (963)
T 4ady_A 579 VKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-Q-- 646 (963)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-H--
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-H--
Confidence 44455544 46788999999999999988776 3467788755 456788999999999999877652 1
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC--CChHHHHHHHHHH
Q 015496 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS--ADLDLQEKALAAI 331 (405)
Q Consensus 254 f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~--~D~~v~E~al~aL 331 (405)
..++.|..+.++. +..+++.|+.++.-+..+. ++...+.+ ..+++.|...... .|...+=.+..|.
T Consensus 647 ----~aid~L~~L~~D~--d~~Vrq~Ai~ALG~Ig~gt----nna~~~rv--a~~l~~L~~~~~dk~~d~~~~fga~iAq 714 (963)
T 4ady_A 647 ----SAIDVLDPLTKDP--VDFVRQAAMIALSMILIQQ----TEKLNPQV--ADINKNFLSVITNKHQEGLAKFGACVAQ 714 (963)
T ss_dssp ----HHHHHHHHHHTCS--SHHHHHHHHHHHHHHSTTC----CTTTCTTH--HHHHHHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred ----HHHHHHHHHccCC--CHHHHHHHHHHHHHHhcCC----ccccchHH--HHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 2457788887765 6678999999999987542 22222233 2355667776643 4666776666666
Q ss_pred HHHhc
Q 015496 332 KNLLQ 336 (405)
Q Consensus 332 ~~L~~ 336 (405)
+-+-.
T Consensus 715 Gll~a 719 (963)
T 4ady_A 715 GIMNA 719 (963)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 65543
No 91
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=94.86 E-value=0.47 Score=44.82 Aligned_cols=207 Identities=15% Similarity=0.109 Sum_probs=132.7
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC-CchhHHHhc-CCHHHHHH-------hcCCCC-----HHHHHHHHH
Q 015496 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSKL-GGLSVLVG-------QLNHPD-----TDIRKISAW 196 (405)
Q Consensus 131 ~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i-DnA~~~~~~-Ggi~~Lv~-------lL~s~~-----~~Ir~~Aa~ 196 (405)
+.|.+.+..|.++ +.|+.|+.+|..--|+. |.|--+-.. |-+..|++ .|+.+. ..--+.|..
T Consensus 3 ~~i~qli~~L~~p----~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLa 78 (268)
T 2fv2_A 3 EKIYQWINELSSP----ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALA 78 (268)
T ss_dssp HHHHHHHHHTSST----TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc----hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHH
Confidence 3445555666655 45899999998877765 445555444 55556653 222211 122355555
Q ss_pred HHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC-----HHHHHHHHHHHHHHhcCC-hhhHHHHHhcCcHHHHHHhhcCC
Q 015496 197 ILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-----VEEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNS 270 (405)
Q Consensus 197 ~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~-----~~v~~kAl~ALS~lir~~-~~~~~~f~~~gGi~~L~~lL~s~ 270 (405)
.+-.+|+ +|+.+..|++.+..-.|...|+..+ +-+|-.++..||++++.. ++....+.+.+.++...+.+..+
T Consensus 79 LlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~G 157 (268)
T 2fv2_A 79 LLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESG 157 (268)
T ss_dssp HHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHS
T ss_pred HHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhc
Confidence 6666775 7999999999987666667776544 346889999999999874 55566667889999999999887
Q ss_pred CccHHHHHHHHHHHHHHhhch--hccCCCCcchhHHh-CCcHHHHHHh-ccCCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 015496 271 SFEIRLHRKAVSLVGDLAKCQ--LENMHKVEPPLFRD-RFFLKSVVDL-TASADLDLQEKALAAIKNLLQLRTTEALVLK 346 (405)
Q Consensus 271 ~~~~kl~~kA~~lLs~L~~~~--~~~~~~~~~~~l~~-~g~l~~Lv~L-L~~~D~~v~E~al~aL~~L~~~~~~~~~~v~ 346 (405)
+.--|.-|.|.+.-+.... +.-. =...+.|.. ..++..++.- ...+++.+..++.++-..|++++ ..+..++
T Consensus 158 --selSKtvAtfIlqKIL~dd~GL~Yi-C~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~-rar~aL~ 233 (268)
T 2fv2_A 158 --SELSKTVATFILQKILLDDTGLAYI-CQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP-RAREALR 233 (268)
T ss_dssp --CHHHHHHHHHHHHHHHHSHHHHHHH-TSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH-HHHHHHH
T ss_pred --cHHHHHHHHHHHHHHhccchhHHHH-HccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH-HHHHHHH
Confidence 4456888999988886421 0000 001112211 1344444443 35568899999999999998753 2344443
No 92
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=94.79 E-value=1.2 Score=44.23 Aligned_cols=158 Identities=16% Similarity=0.107 Sum_probs=106.5
Q ss_pred CCCCchhHHHhcCCHHHHHHhcCC----C-------CHHHHHHHHHHHHHHhcCChHhHHHHHHc-CcHHHHHHhhcCCC
Q 015496 162 EPIDNANDLSKLGGLSVLVGQLNH----P-------DTDIRKISAWILGKASQNNPLVQKQVLEL-GALSKLMKMVKSSF 229 (405)
Q Consensus 162 e~iDnA~~~~~~Ggi~~Lv~lL~s----~-------~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~-G~lp~Ll~LL~s~~ 229 (405)
.+++....|. .||+..|+.+|.. . +..++..+..||..+. ||...-+.++.+ +++..|...|.++.
T Consensus 36 ~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm-N~~~Gl~~vl~~~~~i~~l~~sL~s~~ 113 (386)
T 2bnx_A 36 NPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAV 113 (386)
T ss_dssp SCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-SSHHHHHHHHHSSSHHHHHHHTCCTTS
T ss_pred CCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CCHHHHHHHHcCcHHHHHHHHHhCCCC
Confidence 3567788886 6899999887741 1 4578899999999887 566666667665 78999999998888
Q ss_pred HHHHHHHHHHHHHHhcCCh-hh-HHHHH----------hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCC
Q 015496 230 VEEAVKALYTVSSLIRNNL-AG-QEMFY----------VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 297 (405)
Q Consensus 230 ~~v~~kAl~ALS~lir~~~-~~-~~~f~----------~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~ 297 (405)
..++..++--|+.+|--.. .+ ...++ +..-+..|+..+.+. .+..++..++.+|..|+.+. ++.
T Consensus 114 ~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~-~~~e~~~a~m~lIN~lv~~~---~dl 189 (386)
T 2bnx_A 114 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIALKVGCLQLINALITPA---EEL 189 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT-SCHHHHHHHHHHHHHHHTTC---SCH
T ss_pred chHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcC-ChHHHHHHHHHHHHHHHCCC---CCH
Confidence 8888777665655554322 23 33222 223466788888754 46778889999999998531 111
Q ss_pred ----CcchhHHhCCcHHHHHHhccCCChHHHH
Q 015496 298 ----VEPPLFRDRFFLKSVVDLTASADLDLQE 325 (405)
Q Consensus 298 ----~~~~~l~~~g~l~~Lv~LL~~~D~~v~E 325 (405)
..+..|...|+.+.+-.+-...++++..
T Consensus 190 ~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~ 221 (386)
T 2bnx_A 190 DFRVHIRSELMRLGLHQVLQELREIENEDMKV 221 (386)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHHHHCChHHHHHHHhccCChhHHH
Confidence 2345567788888776665445554443
No 93
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=94.41 E-value=0.57 Score=52.25 Aligned_cols=112 Identities=13% Similarity=0.030 Sum_probs=83.4
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCC---CHHHHHHHHHHHHHHh
Q 015496 126 TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP---DTDIRKISAWILGKAS 202 (405)
Q Consensus 126 ~~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~---~~~Ir~~Aa~~Lg~~a 202 (405)
||.+++.+.+|++..-++..+.+.|..|.+-|+.+=++.+ +|.....+|.++ ++.+|..|+.+|-+..
T Consensus 1 ~~m~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~---------aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I 71 (980)
T 3ibv_A 1 GPMSAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSST---------GWKICHEIFSEKTKYKPSTRLICLQTLSEKV 71 (980)
T ss_dssp --CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTT---------HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChh---------HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 4667788888998777888889999999888888765543 888999999653 7999999999999988
Q ss_pred cCChHh----HHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcC
Q 015496 203 QNNPLV----QKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRN 246 (405)
Q Consensus 203 qNN~~~----Q~~vle~G~lp~Ll~LL~-s~~~~v~~kAl~ALS~lir~ 246 (405)
+.-|.. +...++...+..+.+.-. .++..++.|...+++.++..
T Consensus 72 ~~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~ 120 (980)
T 3ibv_A 72 REWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQ 120 (980)
T ss_dssp HHCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHH
T ss_pred HhCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Confidence 744444 556666666666665211 23456889999999988765
No 94
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=94.31 E-value=0.36 Score=49.47 Aligned_cols=122 Identities=11% Similarity=0.108 Sum_probs=87.6
Q ss_pred CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHH
Q 015496 185 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQ 264 (405)
Q Consensus 185 s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~ 264 (405)
.+++..+..|+..|......-|..++. +|..+++|..+++..+|..|+..|..+|++ .....+ .++|.
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~ki-----aDvL~ 106 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPRV-----ADILT 106 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHHH-----HHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhhH-----HHHHH
Confidence 357999999999999999999999986 568899999999999999999999999998 444443 57999
Q ss_pred HhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHH
Q 015496 265 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKN 333 (405)
Q Consensus 265 ~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~ 333 (405)
++|+++ +..-..-+-..|..|... ++ .+.+..+...+.++|..+||+++..|..
T Consensus 107 QlLqtd--d~~E~~~V~~sL~sllk~-----Dp--------k~tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 107 QLLQTD--DSAEFNLVNNALLSIFKM-----DA--------KGTLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp HHTTCC--CHHHHHHHHHHHHHHHHH-----CH--------HHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHhcc--chHHHHHHHHHHHHHHhc-----Ch--------HHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 999976 222233344444444431 11 2344444444444567777777776643
No 95
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=94.30 E-value=0.36 Score=54.11 Aligned_cols=145 Identities=10% Similarity=0.070 Sum_probs=87.1
Q ss_pred CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC---CH--HHHHHHHHHHHHHhc---CChhhHHHHHhc
Q 015496 186 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS---FV--EEAVKALYTVSSLIR---NNLAGQEMFYVE 257 (405)
Q Consensus 186 ~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~---~~--~v~~kAl~ALS~lir---~~~~~~~~f~~~ 257 (405)
.+=..++.++|++|.++.+-..-+..-.=..++|.|+.+.... ++ -++..++|.||...+ .++....
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~----- 539 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR----- 539 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-----
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-----
Confidence 5678899999999999976443333222235788888888631 12 245567799987554 2232211
Q ss_pred CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhch---hcc-CCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHH
Q 015496 258 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ---LEN-MHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKN 333 (405)
Q Consensus 258 gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~---~~~-~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~ 333 (405)
..+..|...+.++ ..+++..|++++.+||..- +.. ...+..+.+. .++..+...+..-+..-+..+..+++.
T Consensus 540 ~vl~~L~~~l~~~--~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~--~il~~l~~~~~~l~~~~~~~lyeai~~ 615 (1023)
T 4hat_C 540 TVILKLFEFMHET--HEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQ--TIIRDIQKTTADLQPQQVHTFYKACGI 615 (1023)
T ss_dssp HHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHH--HHHHTHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHH--HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2345566666554 4679999999999999631 000 0000011111 233334444444577777899999999
Q ss_pred HhcCCh
Q 015496 334 LLQLRT 339 (405)
Q Consensus 334 L~~~~~ 339 (405)
+++..+
T Consensus 616 vi~~~~ 621 (1023)
T 4hat_C 616 IISEER 621 (1023)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 987644
No 96
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=94.11 E-value=0.88 Score=41.89 Aligned_cols=143 Identities=17% Similarity=0.186 Sum_probs=98.3
Q ss_pred HcCcHHHHHHhhcC----C-------CHHHHHHHHHHHHHHhcCChhhHHHHHh-cCcHHHHHHhhcCCCccHHHHHHHH
Q 015496 214 ELGALSKLMKMVKS----S-------FVEEAVKALYTVSSLIRNNLAGQEMFYV-EAGDLMLQDILGNSSFEIRLHRKAV 281 (405)
Q Consensus 214 e~G~lp~Ll~LL~s----~-------~~~v~~kAl~ALS~lir~~~~~~~~f~~-~gGi~~L~~lL~s~~~~~kl~~kA~ 281 (405)
..+|+..|+.+|.. + +......++.+|-++. ++..+.+.++. .+++..|...|.++ ..+++.-++
T Consensus 41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~~i~~l~~~L~s~--~~~~r~~~l 117 (233)
T 2f31_A 41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPA--VPNMMIDAA 117 (233)
T ss_dssp HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSSHHHHHHTTCCTT--SHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcHHHHHHHHHhCCC--CchHHHHHH
Confidence 56888888888753 1 1233556778887776 66778888876 46789999999876 678899999
Q ss_pred HHHHHHhhchhccC-CCCcchhH------HhCCcHHHHHHhccC-CChHHHHHHHHHHHHHhcCChhh------HHHHHh
Q 015496 282 SLVGDLAKCQLENM-HKVEPPLF------RDRFFLKSVVDLTAS-ADLDLQEKALAAIKNLLQLRTTE------ALVLKD 347 (405)
Q Consensus 282 ~lLs~L~~~~~~~~-~~~~~~~l------~~~g~l~~Lv~LL~~-~D~~v~E~al~aL~~L~~~~~~~------~~~v~~ 347 (405)
-+++.+|....+++ .+...+.+ .+..-...+++.|.. .+.+++..++..+-.+....++- |..+.
T Consensus 118 eLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~- 196 (233)
T 2f31_A 118 KLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELM- 196 (233)
T ss_dssp HHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH-
T ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-
Confidence 99999996420001 11111221 222344557777774 57899999998888888876542 45666
Q ss_pred cCCchHHHHHHHH
Q 015496 348 FCGLDTALERLRQ 360 (405)
Q Consensus 348 ~~Gl~~~L~~L~~ 360 (405)
.+|+.+.+.+|+.
T Consensus 197 ~~Gl~~il~~l~~ 209 (233)
T 2f31_A 197 RLGLHQVLQELRE 209 (233)
T ss_dssp HTTHHHHHHHHHH
T ss_pred HCChHHHHHHHhc
Confidence 8999999999974
No 97
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=93.94 E-value=0.72 Score=50.36 Aligned_cols=138 Identities=13% Similarity=0.069 Sum_probs=91.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh---cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcH
Q 015496 184 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV---KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 260 (405)
Q Consensus 184 ~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL---~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi 260 (405)
.+.+-..+..|++++|.++.+-.... ...++.++..+ .++++.++..++|+||.+.+...... .++ ...+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHH
Confidence 45677889999999999997633211 23344455443 33467799999999998875322211 232 3577
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC--ChHHHHHHHHHHHHHhcCC
Q 015496 261 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQLR 338 (405)
Q Consensus 261 ~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~--D~~v~E~al~aL~~L~~~~ 338 (405)
+.|...|++ .+++..|++++.+||.. ......+.+ ..++..+..++..+ +.+.++.+..+++.++...
T Consensus 532 ~~l~~~l~~----~~V~~~A~~al~~l~~~----~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 532 PLVLHALGN----PELSVSSVSTLKKICRE----CKYDLPPYA--ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL 601 (963)
T ss_dssp HHHHHHTTC----GGGHHHHHHHHHHHHHH----TGGGCTTTH--HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCC----chHHHHHHHHHHHHHHH----HHHHHHhhH--HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence 888888864 35789999999999963 222222222 24555666667653 5788999999999998643
No 98
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=93.40 E-value=0.77 Score=50.52 Aligned_cols=181 Identities=9% Similarity=0.030 Sum_probs=103.1
Q ss_pred CHHHHHHHHHHHHHccCCCC----chh------HHHhcCCHHHHHHhcCCC---CHHHHHHHHHHHHHHhcCChHhHHHH
Q 015496 146 SLEDSQRALQELLILVEPID----NAN------DLSKLGGLSVLVGQLNHP---DTDIRKISAWILGKASQNNPLVQKQV 212 (405)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iD----nA~------~~~~~Ggi~~Lv~lL~s~---~~~Ir~~Aa~~Lg~~aqNN~~~Q~~v 212 (405)
+-..|..|+-.+.-+.+... ... ++... ....++..|.++ ++-+|..|+|+||..+..-+ ...
T Consensus 418 ~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~-l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~---~~~ 493 (960)
T 1wa5_C 418 NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDF-FTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KAQ 493 (960)
T ss_dssp CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHH-HHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HHH
T ss_pred hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHH-HHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC---HHH
Confidence 34567777777776654321 111 22111 011234455555 89999999999999987521 122
Q ss_pred HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-------h-hHHHHHh--cCcHHHHHHhhcCCC-ccHH--HHHH
Q 015496 213 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL-------A-GQEMFYV--EAGDLMLQDILGNSS-FEIR--LHRK 279 (405)
Q Consensus 213 le~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~-------~-~~~~f~~--~gGi~~L~~lL~s~~-~~~k--l~~k 279 (405)
+ ...++.++..|.+++..|+..|++||.+++.+.. . ....+.. ...++.|..++.... .+.+ ....
T Consensus 494 l-~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~ 572 (960)
T 1wa5_C 494 L-IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEF 572 (960)
T ss_dssp H-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHH
T ss_pred H-HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHH
Confidence 2 3467888888888788899999999999987421 1 1111211 124455666666531 0111 1235
Q ss_pred HHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhc----cC-CChHHHHHHHHHHHHHhcC
Q 015496 280 AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT----AS-ADLDLQEKALAAIKNLLQL 337 (405)
Q Consensus 280 A~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL----~~-~D~~v~E~al~aL~~L~~~ 337 (405)
+..++..++.. ..++..+.+. .+++.|...+ ++ ++..+...++.+|+.++..
T Consensus 573 l~~al~~vv~~----~~~~~~p~~~--~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~ 629 (960)
T 1wa5_C 573 LMRSIFRVLQT----SEDSIQPLFP--QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNY 629 (960)
T ss_dssp HHHHHHHHHHH----HTTTTGGGHH--HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH----HHHhhhhHHH--HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 66666666542 1233333222 2444444443 22 4677888888899888765
No 99
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=93.02 E-value=0.064 Score=55.03 Aligned_cols=82 Identities=15% Similarity=0.131 Sum_probs=69.3
Q ss_pred chhHHHhc--CCHHHHHHhcCC----------CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHH
Q 015496 166 NANDLSKL--GGLSVLVGQLNH----------PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA 233 (405)
Q Consensus 166 nA~~~~~~--Ggi~~Lv~lL~s----------~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~ 233 (405)
||..|.+. ..+..|+++|++ .++.+.+-||.=||..++..|..+..+-+.|+=..+++|+.+++++||
T Consensus 385 Na~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr 464 (480)
T 1ho8_A 385 NIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVK 464 (480)
T ss_dssp HSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHH
Confidence 44444442 246778888963 478899999999999999999999998899999999999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 015496 234 VKALYTVSSLIRNN 247 (405)
Q Consensus 234 ~kAl~ALS~lir~~ 247 (405)
..|+.|+.-++.++
T Consensus 465 ~~AL~avQklm~~~ 478 (480)
T 1ho8_A 465 YEALKATQAIIGYT 478 (480)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887764
No 100
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=92.95 E-value=2.9 Score=40.17 Aligned_cols=174 Identities=12% Similarity=0.090 Sum_probs=98.7
Q ss_pred CCCCHHHHHHhHHHHHHHHHHcC-----CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHH
Q 015496 103 QRLSPSELKKRQMEIKELMEKLK-----TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLS 177 (405)
Q Consensus 103 ~~~s~e~l~~r~~~L~~a~~~~~-----~~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~ 177 (405)
.+++|+++. -|.++++.+. .+++ ..+.-..+++ ..+.+.+.-++|-|+-++-+.+.+..|...+.-.
T Consensus 75 ~~Ls~~el~----~L~~l~~~l~~~s~~~~~~-~~l~~l~kil---~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~ 146 (304)
T 3ebb_A 75 KKLTEDDLI----LLEKILSLICNSSSEKPTV-QQLQILWKAI---NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGA 146 (304)
T ss_dssp GCCCHHHHH----HHHHHHHHHHTTCSSCCCH-HHHHHHHHHH---TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHH
T ss_pred cCcCHHHHH----HHHHHHHHHhccCCCccch-HHHHHHHHHH---cCCHHhHHHHHHHHHHHHcCccHHHHhhccccch
Confidence 468998763 3344443331 2222 2333333443 3556788899999998876665555555443323
Q ss_pred HHH----HhcC-CCCHHHHHHHHHHHHHHhcCChHhHHHHHHc--CcHHHHHHhhcCCCHHHHHHH---HHHHHHHhcCC
Q 015496 178 VLV----GQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSSFVEEAVKA---LYTVSSLIRNN 247 (405)
Q Consensus 178 ~Lv----~lL~-s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~--G~lp~Ll~LL~s~~~~v~~kA---l~ALS~lir~~ 247 (405)
.++ ..+. ...+..+..++++++|+.++ +..++.++.. ..++.+...+.+++..++..+ ++-++......
T Consensus 147 ~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~ 225 (304)
T 3ebb_A 147 QFSSHLINLLNPKGKPANQLLALRTFCNCFVG-QAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKD 225 (304)
T ss_dssp HHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-chhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhc
Confidence 333 4443 24577899999999999986 5577766653 344445555555566766543 33333332221
Q ss_pred hhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496 248 LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 248 ~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~ 289 (405)
.. .+.-. --+..+..++... .+....-+++-++.+|+.
T Consensus 226 ~~-~~~~~--~ll~~l~~il~~~-~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 226 HN-IEGKA--QCLSLISTILEVV-QDLEATFRLLVALGTLIS 263 (304)
T ss_dssp CC-HHHHH--HHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHT
T ss_pred CC-chHHH--HHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHh
Confidence 11 11111 1344555556543 356677889999999985
No 101
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.89 E-value=1.2 Score=49.76 Aligned_cols=153 Identities=13% Similarity=0.145 Sum_probs=109.0
Q ss_pred HHHHHHHHHccCCCCc--hhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcC-ChHhHHHHHHcCcHHHHHHhhcC
Q 015496 151 QRALQELLILVEPIDN--ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMKMVKS 227 (405)
Q Consensus 151 ~~AL~~L~~Lve~iDn--A~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqN-N~~~Q~~vle~G~lp~Ll~LL~s 227 (405)
+.|+..+..+++.... .-.-+-.+.+|.++..+......+|..|..++..++++ ||.... ..+|.|+..+.+
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~-----~~~~~~~~~~~~ 144 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIK-----ALLPHLTNAIVE 144 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHH-----HHHHHHHHHhcc
Confidence 6677777777754432 22233346788888988888899999999888888875 454443 458999999976
Q ss_pred CC-HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhC
Q 015496 228 SF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR 306 (405)
Q Consensus 228 ~~-~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~ 306 (405)
.. =..+..|+..|..++...+. +-...--..+|.+..++-+. ...++..|..++..+|..- .|.+. .
T Consensus 145 ~~kw~~k~~~l~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~d~--k~~v~~~~~~~~~~~~~~~---~n~d~------~ 212 (986)
T 2iw3_A 145 TNKWQEKIAILAAFSAMVDAAKD-QVALRMPELIPVLSETMWDT--KKEVKAAATAAMTKATETV---DNKDI------E 212 (986)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSHH-HHHHHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHGGGC---CCTTT------G
T ss_pred ccchHHHHHHHHHHHHHHHHhHH-HHHHhccchhcchHhhcccC--cHHHHHHHHHHHHHHHhcC---CCcch------h
Confidence 54 36688899999999876643 22223346789999999876 4567888888999998631 23221 3
Q ss_pred CcHHHHHHhccCCC
Q 015496 307 FFLKSVVDLTASAD 320 (405)
Q Consensus 307 g~l~~Lv~LL~~~D 320 (405)
.++|.|++.+.+++
T Consensus 213 ~~~~~~~~~~~~p~ 226 (986)
T 2iw3_A 213 RFIPSLIQCIADPT 226 (986)
T ss_dssp GGHHHHHHHHHCTT
T ss_pred hhHHHHHHHhcChh
Confidence 57899999998875
No 102
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=92.83 E-value=6.3 Score=36.94 Aligned_cols=131 Identities=8% Similarity=0.064 Sum_probs=92.8
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015496 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (405)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL 225 (405)
+.++|+..|....+++-+-|.+ -+- .-++.++.+-..++.++|...+..|..++...++... ..++.|..++
T Consensus 28 ~~~~kl~~L~qa~el~~~~dp~-ll~--~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~Ll 99 (257)
T 3gs3_A 28 SPSTKCELLAKVQETVLGSCAE-LAE--EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP-----HVINVVSMLL 99 (257)
T ss_dssp CHHHHHHHHHHHHHHHTTTTGG-GHH--HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHccCHh-HHH--HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 4579999999999977554432 222 2477778877678999999999999999976665443 4578899999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCc--------H-------HHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--------D-------LMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 226 ~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gG--------i-------~~L~~lL~s~~~~~kl~~kA~~lLs~L~~ 289 (405)
+++++.+.++++-+.+++- +...+.+...++ | ..++..+.+. +..+|..+.-++..+..
T Consensus 100 ~d~d~~V~K~~I~~~~~iY---~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~--n~gvkl~~iKF~e~vIl 173 (257)
T 3gs3_A 100 RDNSAQVIKRVIQACGSIY---KNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNE--NDGIRTNAIKFLEGVVV 173 (257)
T ss_dssp TCSCHHHHHHHHHHHHHHH---HHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSS--CHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHH---HHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccC--CcchHHHHHHHHHHHHH
Confidence 9888889888888888764 333333333332 2 2344445554 67788899988888763
No 103
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=92.61 E-value=1.6 Score=47.65 Aligned_cols=136 Identities=14% Similarity=0.116 Sum_probs=85.3
Q ss_pred CCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhc---CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHH
Q 015496 145 LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL---NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKL 221 (405)
Q Consensus 145 ~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL---~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~L 221 (405)
.+-..+..++-.+.-+.+.+.... ..-++.++..| ..+++.||..++|+||..+.--.... .++ ...++.|
T Consensus 461 ~~w~~~eaal~al~~i~~~~~~~~----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~~l 534 (963)
T 2x19_B 461 YSWQHTEALLYGFQSIAETIDVNY----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVLPLV 534 (963)
T ss_dssp CCHHHHHHHHHHHHHHTTSCCSSC----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHHHH
T ss_pred CchHHHHHHHHHHHHHHhhcCchh----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHHHH
Confidence 355677777777777766653211 11233344333 34688999999999998875211111 222 3788999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496 222 MKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 222 l~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~ 289 (405)
+..+.+ +.++..|++|+.++++..+....-++ ..-++.|..++..+..+...+..+..++..++.
T Consensus 535 ~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~ 599 (963)
T 2x19_B 535 LHALGN--PELSVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLS 599 (963)
T ss_dssp HHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence 988865 67899999999999976543221111 123445556666532355678788888888874
No 104
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=92.52 E-value=1.2 Score=42.17 Aligned_cols=199 Identities=16% Similarity=0.131 Sum_probs=132.4
Q ss_pred hHHHHHHHhhcCCCccccchhhccCCCCHHHHHHhHHHHH----HHHHHcCCCCHHHHHHHHHHHhhc---CCCCHH--H
Q 015496 79 IDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIK----ELMEKLKTPSDAQLIQIAIDDLNN---STLSLE--D 149 (405)
Q Consensus 79 l~~LLkwsi~~s~~~~~~~~~~~~~~~s~e~l~~r~~~L~----~a~~~~~~~~d~~lmk~al~~L~~---~~~t~e--~ 149 (405)
++.+.+|-.+-.+|+....+-. ++.|||+-.. -.+.++| ..+.+++|.+.+.-. +..+.. +
T Consensus 2 ~~~i~qli~~L~~p~~Re~AL~--------eLsk~Re~~~~La~~LW~S~G--tia~LLQEIisiYp~lspp~Lt~~~Sn 71 (268)
T 2fv2_A 2 REKIYQWINELSSPETRENALL--------ELSKKRESVPDLAPMLWHSFG--TIAALLQEIVNIYPSINPPTLTAHQSN 71 (268)
T ss_dssp CHHHHHHHHHTSSTTTHHHHHH--------HHHHHTTTCTTHHHHHHHSTT--HHHHHHHHHHHTGGGBTTBCCCHHHHH
T ss_pred hHHHHHHHHHhcCchhHHHHHH--------HHHHhhhccccHHHHHHhccC--HHHHHHHHHHHHcccCCCcccCHHHHh
Confidence 4677889888777766322211 1112222111 2345444 356778888877643 233332 3
Q ss_pred H-HHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCC-----CHHHHHHHHHHHHHHhc-CChHhHHHHHHcCcHHHHH
Q 015496 150 S-QRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP-----DTDIRKISAWILGKASQ-NNPLVQKQVLELGALSKLM 222 (405)
Q Consensus 150 k-~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~-----~~~Ir~~Aa~~Lg~~aq-NN~~~Q~~vle~G~lp~Ll 222 (405)
| ..||--|.-.+.+.|....|.+....-.|..+|+.. .+-+|-.+..+||.+++ +++++-...++.+.+|..+
T Consensus 72 RVcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL 151 (268)
T 2fv2_A 72 RVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL 151 (268)
T ss_dssp HHHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence 4 456666777778899999999998777777788632 37799999999999997 5778888888999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCChhhHHH-------HHhc-CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496 223 KMVKSSFVEEAVKALYTVSSLIRNNLAGQEM-------FYVE-AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 223 ~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~-------f~~~-gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~ 289 (405)
+.+..+++--+..|.+-+..|+-+. .+... |... ..+..++.-+... .+.++.+.++.+..-|+.
T Consensus 152 rime~GselSKtvAtfIlqKIL~dd-~GL~YiC~t~eRF~av~~vL~~mV~~l~~~-ps~RLLKhiircYlRLsd 224 (268)
T 2fv2_A 152 RIMESGSELSKTVATFILQKILLDD-TGLAYICQTYERFSHVAMILGKMVLQLSKE-PSARLLKHVVRCYLRLSD 224 (268)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHSH-HHHHHHTSSHHHHHHHHHHHHHHHHHTTTS-CCHHHHHHHHHHHHHHTT
T ss_pred HHHhhccHHHHHHHHHHHHHHhccc-hhHHHHHccHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHhc
Confidence 9999999888889999998887653 33333 3221 1222223223222 367888888888777764
No 105
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=92.36 E-value=2.6 Score=46.32 Aligned_cols=193 Identities=9% Similarity=0.096 Sum_probs=116.6
Q ss_pred HHHHHhhcCC-CCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-------h
Q 015496 135 IAIDDLNNST-LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNN-------P 206 (405)
Q Consensus 135 ~al~~L~~~~-~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN-------~ 206 (405)
..+..+.++. ..+--|..|+..+..+.+.+. ...+. ..++.+++.|.++++.||..||++|.+++.+. +
T Consensus 459 ~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~-~~~l~--~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~ 535 (960)
T 1wa5_C 459 EIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT-KAQLI--ELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAF 535 (960)
T ss_dssp HTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC-HHHHH--HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCB
T ss_pred HhHHHhcCCCCCCceehHHHHHHHHHHHhhCC-HHHHH--HHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccc
Confidence 3455565542 245678889999999887762 22222 35788888888888999999999999988741 1
Q ss_pred Hh-HHHHHH--cCcHHHHHHhhcCCC---HH--HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhh----cCCCccH
Q 015496 207 LV-QKQVLE--LGALSKLMKMVKSSF---VE--EAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL----GNSSFEI 274 (405)
Q Consensus 207 ~~-Q~~vle--~G~lp~Ll~LL~s~~---~~--v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL----~s~~~~~ 274 (405)
.. +..+.. ...++.|+.++.... .. ....++.||+.++.........+.. .-++.|...+ +++ .+.
T Consensus 536 ~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~~~~~-~~~ 613 (960)
T 1wa5_C 536 IFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNP-SNP 613 (960)
T ss_dssp SSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSC-CCH
T ss_pred cccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhCC-CCc
Confidence 21 222211 145667777777641 11 2345677777665533222111111 1223344333 333 356
Q ss_pred HHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496 275 RLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (405)
Q Consensus 275 kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~ 337 (405)
.++..++-+|+.+++. .+++....+ ...+++.+...|.....++.+.+...+..++..
T Consensus 614 ~~~~~~~e~l~~l~~~----~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 614 RFTHYTFESIGAILNY----TQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp HHHHHHHHHHHHHHHT----SCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc----CCcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHh
Confidence 6777788888888863 233333333 345667777888777677888888888777643
No 106
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=92.08 E-value=0.85 Score=49.98 Aligned_cols=131 Identities=10% Similarity=0.086 Sum_probs=81.7
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHH---hcC--CCCHHHHHHHHHHHHHHhcC---ChHhHHHHHHcCc
Q 015496 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVG---QLN--HPDTDIRKISAWILGKASQN---NPLVQKQVLELGA 217 (405)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~---lL~--s~~~~Ir~~Aa~~Lg~~aqN---N~~~Q~~vle~G~ 217 (405)
+-..++.|+-.+.-+.+.+..... ..++.++. .|. .+++.||..|+|+||..+.- +++.- ...
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~~----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l-----~~v 547 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEEK----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI-----PPA 547 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH-----HHH
T ss_pred cHHHHHHHHHHHHHHHhhcChhhh----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH-----HHH
Confidence 335777888888877776542211 22333333 333 24899999999999988742 22111 135
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496 218 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 218 lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~ 289 (405)
++.|+..++ +.++..|.+|+.+++++......-++ ..-+..|..++..+..+.+.+..+..++..++.
T Consensus 548 l~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~ 615 (971)
T 2x1g_F 548 INLLVRGLN---SSMSAQATLGLKELCRDCQLQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMS 615 (971)
T ss_dssp HHHHHHHHH---SSCHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC---hHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence 666776663 56789999999999987654333222 234556667777643456778888888998875
No 107
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=91.99 E-value=1 Score=44.74 Aligned_cols=141 Identities=16% Similarity=0.174 Sum_probs=96.6
Q ss_pred cCcHHHHHHhhcC----C-------CHHHHHHHHHHHHHHhcCChhhHHHHHhc-CcHHHHHHhhcCCCccHHHHHHHHH
Q 015496 215 LGALSKLMKMVKS----S-------FVEEAVKALYTVSSLIRNNLAGQEMFYVE-AGDLMLQDILGNSSFEIRLHRKAVS 282 (405)
Q Consensus 215 ~G~lp~Ll~LL~s----~-------~~~v~~kAl~ALS~lir~~~~~~~~f~~~-gGi~~L~~lL~s~~~~~kl~~kA~~ 282 (405)
.+|+..|+.+|.. + +......++.+|-+++ |+..+.+.++.+ +++..|..+|.++ .++++..++-
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm-N~~~Gl~~vl~~~~~i~~l~~sL~s~--~~~~r~~vle 122 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPA--VPNMMIDAAK 122 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-SSHHHHHHHHHSSSHHHHHHHTCCTT--SHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CCHHHHHHHHcCcHHHHHHHHHhCCC--CchHHHHHHH
Confidence 5777777777642 1 1234567788888776 567777777764 6889999999875 6788889999
Q ss_pred HHHHHhhchhccC-CCCcchhH------HhCCcHHHHHHhcc-CCChHHHHHHHHHHHHHhcCChhh------HHHHHhc
Q 015496 283 LVGDLAKCQLENM-HKVEPPLF------RDRFFLKSVVDLTA-SADLDLQEKALAAIKNLLQLRTTE------ALVLKDF 348 (405)
Q Consensus 283 lLs~L~~~~~~~~-~~~~~~~l------~~~g~l~~Lv~LL~-~~D~~v~E~al~aL~~L~~~~~~~------~~~v~~~ 348 (405)
+++.+|....+++ .+...+.+ .+..-...+++.+. +.+.+++..++..+-.++...++- |..+. .
T Consensus 123 LL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~-~ 201 (386)
T 2bnx_A 123 LLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELM-R 201 (386)
T ss_dssp HHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH-H
T ss_pred HHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-H
Confidence 9999996420001 11111111 22334455777776 458899999998888888877642 46677 8
Q ss_pred CCchHHHHHHH
Q 015496 349 CGLDTALERLR 359 (405)
Q Consensus 349 ~Gl~~~L~~L~ 359 (405)
+|+.+.+.+|+
T Consensus 202 ~GL~~il~~Lr 212 (386)
T 2bnx_A 202 LGLHQVLQELR 212 (386)
T ss_dssp TTHHHHHHHHT
T ss_pred CChHHHHHHHh
Confidence 99999999887
No 108
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=91.92 E-value=6.4 Score=38.45 Aligned_cols=143 Identities=15% Similarity=0.115 Sum_probs=103.6
Q ss_pred HHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC---cHHHHHHhhcC
Q 015496 193 ISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA---GDLMLQDILGN 269 (405)
Q Consensus 193 ~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~g---Gi~~L~~lL~s 269 (405)
.+-.+|..++. ++.....++..+.+-.+.+.+..++=++..-|...+-.+...|+.....|+..+ -+...-.+|.+
T Consensus 142 ~~G~mLRecir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S 220 (341)
T 1upk_A 142 NCGIMLRECIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHS 220 (341)
T ss_dssp HHHHHHHHHHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence 33444444444 355666666667777788888877767788888888888777888777888755 35566778888
Q ss_pred CCccHHHHHHHHHHHHHHhhchhccCCCCcch-hHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhh
Q 015496 270 SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPP-LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTE 341 (405)
Q Consensus 270 ~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~-~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~ 341 (405)
+ +.=.||.++-+|+.|.... .+..... .+.+..-++.++.+|++....+|-.|-....-.+..+...
T Consensus 221 ~--NYVTkRQSlKLLgelLldr---~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~ 288 (341)
T 1upk_A 221 E--NYVTKRQSLKLLGELLLDR---HNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKT 288 (341)
T ss_dssp S--SHHHHHHHHHHHHHHHHSG---GGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCC
T ss_pred C--cchhHHHHHHHHHHHHhCc---hHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCC
Confidence 7 5668999999999998531 2222222 2344578899999999999999999999999888876543
No 109
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=91.25 E-value=1.6 Score=47.82 Aligned_cols=134 Identities=12% Similarity=0.056 Sum_probs=83.4
Q ss_pred CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh---c--CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcH
Q 015496 186 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV---K--SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 260 (405)
Q Consensus 186 ~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL---~--s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi 260 (405)
.+-..+..|..+++.++.+-+... ...++.++.++ . +.++.+|..++|+||.+........+ ++ ...+
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~-~l-~~vl 548 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA-YI-PPAI 548 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CH-HHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH-HH-HHHH
Confidence 466789999999999998644322 13444444433 3 23678999999999987643211111 11 1234
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC--ChHHHHHHHHHHHHHhcC
Q 015496 261 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQL 337 (405)
Q Consensus 261 ~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~--D~~v~E~al~aL~~L~~~ 337 (405)
+.|+..|. .+++..|++++.+||.. ......+.+ ..++..+..++..+ +.+.++.+..++..++..
T Consensus 549 ~~l~~~l~-----~~v~~~A~~al~~l~~~----~~~~l~p~~--~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 549 NLLVRGLN-----SSMSAQATLGLKELCRD----CQLQLKPYA--DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHHHHHH-----SSCHHHHHHHHHHHHHH----CHHHHHHHH--HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC-----hHHHHHHHHHHHHHHHH----HHHhccccH--HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 56666663 24689999999999953 221111121 24666777777773 678999999999998864
No 110
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=91.01 E-value=1.2 Score=50.17 Aligned_cols=126 Identities=11% Similarity=0.153 Sum_probs=80.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcC-------CCHHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 015496 185 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-------SFVEEAVKALYTVSSLIRNNLAGQEMFYVE 257 (405)
Q Consensus 185 s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s-------~~~~v~~kAl~ALS~lir~~~~~~~~f~~~ 257 (405)
..+.+-+..+..+|||+.. | ..++.|.+++.. ....++..|++||..+....|...
T Consensus 451 ~~~~~~~~~~LkaLGN~g~--p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v------ 513 (1056)
T 1lsh_A 451 RAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV------ 513 (1056)
T ss_dssp TTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH------
T ss_pred cCChHHHHHHHHHhhccCC--h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH------
Confidence 4455556666667776664 2 357777777742 134678889999999887665432
Q ss_pred CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC-CChHHHHHHHHHHHHHhc
Q 015496 258 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS-ADLDLQEKALAAIKNLLQ 336 (405)
Q Consensus 258 gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~-~D~~v~E~al~aL~~L~~ 336 (405)
-++|..++.+...+..+|.-|+..|-. + +| ....+..++..+.. .+..|.--+...|.+++.
T Consensus 514 --~~il~~i~~n~~e~~EvRiaA~~~Lm~-t-------~P-------~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 514 --QEIVLPIFLNVAIKSELRIRSCIVFFE-S-------KP-------SVALVSMVAVRLRREPNLQVASFVYSQMRSLSR 576 (1056)
T ss_dssp --HHHHHHHHHCTTSCHHHHHHHHHHHHH-T-------CC-------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHhcCCCCChHHHHHHHHHHHH-H-------Cc-------CHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHh
Confidence 245666775554566777766655532 1 12 13467777777776 478888888888888887
Q ss_pred CChhhHHH
Q 015496 337 LRTTEALV 344 (405)
Q Consensus 337 ~~~~~~~~ 344 (405)
...-+.+.
T Consensus 577 s~~P~~~~ 584 (1056)
T 1lsh_A 577 SSNPEFRD 584 (1056)
T ss_dssp CCSGGGHH
T ss_pred cCCcchHH
Confidence 64334333
No 111
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=90.71 E-value=2.2 Score=41.16 Aligned_cols=108 Identities=17% Similarity=0.134 Sum_probs=69.9
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc--CcHH----HHHHhhcCCC-ccHHHHHHHHHHHHHHhh
Q 015496 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE--AGDL----MLQDILGNSS-FEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 217 ~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~--gGi~----~L~~lL~s~~-~~~kl~~kA~~lLs~L~~ 289 (405)
.+..|+ +..+.++.++.+|...|++.+||||++.+.+.+. +-+. -|..++...+ ....++++-+.+|.-|+.
T Consensus 72 lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~ 150 (315)
T 3qml_C 72 LLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPV 150 (315)
T ss_dssp HHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCC
T ss_pred HHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhc
Confidence 334444 3344456789999999999999999999977653 2222 2333333211 123567778888888875
Q ss_pred chhccCCCCcchhHHhCCcHHHHHHhccCC--ChHHHHHHHHHHHHHh
Q 015496 290 CQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLL 335 (405)
Q Consensus 290 ~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~--D~~v~E~al~aL~~L~ 335 (405)
+ +. .|. ...+..|.+++... +.+++.+++..+..+.
T Consensus 151 ~------~~---~F~-~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 151 T------SE---DLP-IYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp C------ST---TC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred C------hH---hhh-hccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 2 21 232 33456777776666 9999999999998776
No 112
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=90.38 E-value=6.3 Score=43.69 Aligned_cols=161 Identities=12% Similarity=0.093 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcC--CCHHHHHHHHHHHHHHhcCChhh-HHHHHhcCcHHHHHH
Q 015496 189 DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS--SFVEEAVKALYTVSSLIRNNLAG-QEMFYVEAGDLMLQD 265 (405)
Q Consensus 189 ~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s--~~~~v~~kAl~ALS~lir~~~~~-~~~f~~~gGi~~L~~ 265 (405)
..+..+..+|-.++...+.. ++. -.++.|-+.+.+ .+-..+..++||+|++....... ...|+ ...++.|..
T Consensus 428 ~~~~~~~~~L~~l~~~~~~~---~l~-~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l-~~v~~~l~~ 502 (1049)
T 3m1i_C 428 QLYKSEREVLVYLTHLNVID---TEE-IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLD 502 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCHHH---HHH-HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHH---HHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHH-HHHHHHHHH
Confidence 34666777888887544321 111 123444444543 23456889999999997654332 12221 123344444
Q ss_pred hhcC--CC-ccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhH
Q 015496 266 ILGN--SS-FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEA 342 (405)
Q Consensus 266 lL~s--~~-~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~ 342 (405)
+... ++ ....++..++|+++.++..- ..++ +.+ ..+++.++..+.++++.++..|+.++.+++. +++
T Consensus 503 l~~~~~~~~~~~~v~~~~~~~lgry~~~~--~~~~---~~l--~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~---~~~ 572 (1049)
T 3m1i_C 503 LTVKKRGKDNKAVVASDIMYVVGQYPRFL--KAHW---NFL--RTVILKLFEFMHETHEGVQDMACDTFIKIVQ---KCK 572 (1049)
T ss_dssp HTTSSCSHHHHHHHHHHHHHHHHHCHHHH--HHCH---HHH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH---HHT
T ss_pred HHhhhccccchHHHHHHHHHHHHHHHHHH--HhHH---HHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH---HHH
Confidence 3221 10 13444446889999876421 0111 122 2466777778888889999999999999996 344
Q ss_pred HHHH--hcCCchHHHHHHHHHHHH
Q 015496 343 LVLK--DFCGLDTALERLRQQLQE 364 (405)
Q Consensus 343 ~~v~--~~~Gl~~~L~~L~~~~~~ 364 (405)
..+. +.+.+.|.+..+.+.+..
T Consensus 573 ~~l~~~~~~~~~p~~~~il~~l~~ 596 (1049)
T 3m1i_C 573 YHFVIQQPRESEPFIQTIIRDIQK 596 (1049)
T ss_dssp HHHHSCCTTCSSCHHHHHHHTHHH
T ss_pred HHhhcccCCCCCcHHHHHHHHHHH
Confidence 4432 122233445555444433
No 113
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=89.97 E-value=2.8 Score=47.07 Aligned_cols=196 Identities=15% Similarity=0.150 Sum_probs=110.1
Q ss_pred ccCCCCHHHHH----------HhHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHH
Q 015496 101 DVQRLSPSELK----------KRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDL 170 (405)
Q Consensus 101 ~~~~~s~e~l~----------~r~~~L~~a~~~~~~~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~ 170 (405)
-.+.++.|+++ +-|.|+.+++-..|.+.-...|++ .+.+...+..+...++-.+..++.. + ..
T Consensus 319 ~lR~~~~e~L~~l~~~~~~~~~~r~~~lDal~~aGT~~a~~~i~~---~i~~~~l~~~ea~~~l~~~~~~~~P-t--~e- 391 (1056)
T 1lsh_A 319 FLRNVDAGVLQSIWHKLHQQKDYRRWILDAVPAMATSEALLFLKR---TLASEQLTSAEATQIVASTLSNQQA-T--RE- 391 (1056)
T ss_dssp HHTTSCHHHHHHHHHHHTTSHHHHHHHHHHHHHHCSHHHHHHHHH---HHHTTCSCHHHHHHHHHHHHHTCCC-C--HH-
T ss_pred HHhcCCHHHHHHHHHHHhccHHHHHHHHHHhHhcCCHHHHHHHHH---HHHcCCCCHHHHHHHHHHhhccCCC-C--HH-
Confidence 34567776653 123566666666555433344444 4566666766654454444444321 1 11
Q ss_pred HhcCCHHHHHHhcCC----CCHHHHHHHHHHHHHHhc----CChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 015496 171 SKLGGLSVLVGQLNH----PDTDIRKISAWILGKASQ----NNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 242 (405)
Q Consensus 171 ~~~Ggi~~Lv~lL~s----~~~~Ir~~Aa~~Lg~~aq----NN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~ 242 (405)
.+..+..++.+ .++.+|..|.-++|+++. +++.|...+++ -....|.+.+...+...+..++.||+|
T Consensus 392 ----~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~-~i~~~l~~~~~~~~~~~~~~~LkaLGN 466 (1056)
T 1lsh_A 392 ----SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQ-PLHDLLSQSSDRAKEEEIVLALKALGN 466 (1056)
T ss_dssp ----HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTH-HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH-HHHHHHHHHHhcCChHHHHHHHHHhhc
Confidence 23445566654 467888888888888774 23222211110 122234444556666678889999999
Q ss_pred HhcCChhhHHHHHhcCcHHHHHHhhcC-----CCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhc-
Q 015496 243 LIRNNLAGQEMFYVEAGDLMLQDILGN-----SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT- 316 (405)
Q Consensus 243 lir~~~~~~~~f~~~gGi~~L~~lL~s-----~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL- 316 (405)
+ +++. .++.|..++.. .+...++|..|+++|..+... .| ..+-+.+..+.
T Consensus 467 ~--g~p~---------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~-----~p--------~~v~~il~~i~~ 522 (1056)
T 1lsh_A 467 A--GQPN---------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR-----DP--------RKVQEIVLPIFL 522 (1056)
T ss_dssp H--TCGG---------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT-----CH--------HHHHHHHHHHHH
T ss_pred c--CChh---------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhh-----ch--------HHHHHHHHHHhc
Confidence 8 3453 45666666642 223577888899998888631 11 11223445555
Q ss_pred -cCCChHHHHHHHHHHH
Q 015496 317 -ASADLDLQEKALAAIK 332 (405)
Q Consensus 317 -~~~D~~v~E~al~aL~ 332 (405)
...++++|-.|+..|.
T Consensus 523 n~~e~~EvRiaA~~~Lm 539 (1056)
T 1lsh_A 523 NVAIKSELRIRSCIVFF 539 (1056)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHH
Confidence 3457888887776554
No 114
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=89.81 E-value=3.5 Score=45.73 Aligned_cols=147 Identities=12% Similarity=0.074 Sum_probs=81.7
Q ss_pred CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC-----CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcH
Q 015496 186 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS-----FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 260 (405)
Q Consensus 186 ~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~-----~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi 260 (405)
.+-..+..|++++|.++.......+.-+-...++.|+.+.... .+-++..++|++|.+.+-..... .++. ..+
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~-~~l~-~vl 542 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW-NFLR-TVI 542 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCH-HHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHH-HHHH-HHH
Confidence 5667899999999999875433322111122444455543321 12345468899997654322111 2221 345
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHhhchhcc---C-CCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015496 261 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN---M-HKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336 (405)
Q Consensus 261 ~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~---~-~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~ 336 (405)
+.|+..+.++ +.+++..|++++.+||..-... . ..+..+.+ ..++..+..++..-+.+-......++..++.
T Consensus 543 ~~ll~~l~~~--~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~--~~il~~l~~~~~~~~~~~~~~~~eai~~ii~ 618 (1049)
T 3m1i_C 543 LKLFEFMHET--HEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI--QTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1049)
T ss_dssp HHHHHHTTSS--CHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH--HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 6677777764 6789999999999999631000 0 00000111 1244444455555566666777788888765
Q ss_pred CC
Q 015496 337 LR 338 (405)
Q Consensus 337 ~~ 338 (405)
..
T Consensus 619 ~~ 620 (1049)
T 3m1i_C 619 EE 620 (1049)
T ss_dssp TC
T ss_pred cC
Confidence 43
No 115
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=89.76 E-value=13 Score=36.90 Aligned_cols=195 Identities=12% Similarity=0.093 Sum_probs=123.5
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015496 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (405)
Q Consensus 131 ~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~ 210 (405)
+.+-+++....... .++|+..|..+.+++-+-|- .-+ -.-++.++.+-..++.+||...+..|..++...++..-
T Consensus 25 ~~v~~lln~A~~~~--~~~Kl~~L~q~~EL~l~~dp-sLl--~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~ 99 (386)
T 3o2t_A 25 ERVVDLLNQAALIT--NDSKITVLKQVQELIINKDP-TLL--DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLL 99 (386)
T ss_dssp HHHHHHHHHHHHCC--STHHHHHHHHHHHHHHTTCG-GGG--GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHhhhccC--hHHHHHHHHHHHHHHhccCH-HHH--HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444432 36799999999997544332 111 23588899988888999999999999999975554432
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCc--------HH-------HHHHhhcCCCccHH
Q 015496 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--------DL-------MLQDILGNSSFEIR 275 (405)
Q Consensus 211 ~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gG--------i~-------~L~~lL~s~~~~~k 275 (405)
.+++.|..||.++++.+.++++-+.+++- +...+.++..++ |. .++..+.+. +..
T Consensus 100 -----~~l~~L~~LL~d~d~~V~K~~I~~~tslY---pl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~--n~G 169 (386)
T 3o2t_A 100 -----KLIANLNMLLRDENVNVVKKAILTMTQLY---KVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSD--NDG 169 (386)
T ss_dssp -----HHHHHHHHHHTCSSHHHHHHHHHHHHHHH---HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCS--SHH
T ss_pred -----HHHHHHHHHHcCCCHHHHHHHHHHHHHHH---HHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccC--Ccc
Confidence 45788899998888888888888888874 344444444333 22 334445554 677
Q ss_pred HHHHHHHHHHHHhhchhcc-CCCC---------------------cchhHHh--CCcHHHHHHhccCC--ChHHHHHHHH
Q 015496 276 LHRKAVSLVGDLAKCQLEN-MHKV---------------------EPPLFRD--RFFLKSVVDLTASA--DLDLQEKALA 329 (405)
Q Consensus 276 l~~kA~~lLs~L~~~~~~~-~~~~---------------------~~~~l~~--~g~l~~Lv~LL~~~--D~~v~E~al~ 329 (405)
+|..++-++..+..-+... .+++ ....+.. .+++..|+..+..+ +.-....+++
T Consensus 170 Vrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~ln 249 (386)
T 3o2t_A 170 IRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALG 249 (386)
T ss_dssp HHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHH
Confidence 8889998888876322100 0100 0112222 37788888888764 3445566777
Q ss_pred HHHHHhcCChh
Q 015496 330 AIKNLLQLRTT 340 (405)
Q Consensus 330 aL~~L~~~~~~ 340 (405)
.|..|+.....
T Consensus 250 sLa~Iak~RP~ 260 (386)
T 3o2t_A 250 SLANIARQRPM 260 (386)
T ss_dssp HHHHHHHHSGG
T ss_pred HHHHHHHhcHH
Confidence 77777765443
No 116
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=89.52 E-value=1.9 Score=48.20 Aligned_cols=135 Identities=12% Similarity=0.132 Sum_probs=79.7
Q ss_pred HHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhh-HHHHHhcCcHHHHHHhhcCC-CccHH--HHHHHHHHHHHHhhchh
Q 015496 219 SKLMKMVKSS--FVEEAVKALYTVSSLIRNNLAG-QEMFYVEAGDLMLQDILGNS-SFEIR--LHRKAVSLVGDLAKCQL 292 (405)
Q Consensus 219 p~Ll~LL~s~--~~~v~~kAl~ALS~lir~~~~~-~~~f~~~gGi~~L~~lL~s~-~~~~k--l~~kA~~lLs~L~~~~~ 292 (405)
+.|-+.+.++ +=..++.++||+|++..+-.+. ...|+ ...++.|+.++... ..+.+ ++.-++|+++..+..-
T Consensus 454 ~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl- 531 (1023)
T 4hat_C 454 SKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFL- 531 (1023)
T ss_dssp HHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHH-
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHH-HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHH-
Confidence 3444444432 3366899999999998764433 22332 34667788877531 11333 4445779998876531
Q ss_pred ccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHH--hcCCchHHHHHHHHHHHH
Q 015496 293 ENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLK--DFCGLDTALERLRQQLQE 364 (405)
Q Consensus 293 ~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~--~~~Gl~~~L~~L~~~~~~ 364 (405)
..+++ .+ ..+++.|.+.+..+++.+++.|++++.+|++ +|+..+. +.+...|.+..+.+.+..
T Consensus 532 -~~~~~---~L--~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~---~c~~~l~~~~~~e~~p~~~~il~~l~~ 596 (1023)
T 4hat_C 532 -KAHWN---FL--RTVILKLFEFMHETHEGVQDMACDTFIKIVQ---KCKYHFVIQQPRESEPFIQTIIRDIQK 596 (1023)
T ss_dssp -HHCHH---HH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH---HHTHHHHSCCTTCSSCHHHHHHHTHHH
T ss_pred -hccHH---HH--HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH---HHHHHhhccCCCCCchhHHHHHHHHHH
Confidence 01111 11 2355556666766778999999999999985 4666653 122334555555554444
No 117
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=87.58 E-value=5.4 Score=39.60 Aligned_cols=183 Identities=14% Similarity=0.197 Sum_probs=125.1
Q ss_pred HHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc-CCC
Q 015496 151 QRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SSF 229 (405)
Q Consensus 151 ~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~-s~~ 229 (405)
.+++|-|--|.++-+-.+-|++..|+..+-...+.++.++-...+..|-.++-.-.-+.. --...+|.+++.+. +++
T Consensus 261 tR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t--~L~e~LPFi~~~i~~h~e 338 (619)
T 3c2g_A 261 IRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKT--PLENILPFLLRLIEIHPD 338 (619)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTS--CCTTHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhc--cccccchHHHHHhccCCC
Confidence 467777777777777777899999999999999999999999999888876643211110 01367899988885 566
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcC-CC----ccHHHHHHHHHHHHHHhhch---h----ccCCC
Q 015496 230 VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN-SS----FEIRLHRKAVSLVGDLAKCQ---L----ENMHK 297 (405)
Q Consensus 230 ~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s-~~----~~~kl~~kA~~lLs~L~~~~---~----~~~~~ 297 (405)
+++...-..-|||.+.|..+..+.-+..|++..|-..+.. +. .+..-+..||..++|-.+.- + +..+.
T Consensus 339 DdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NG 418 (619)
T 3c2g_A 339 DEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNG 418 (619)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTS
T ss_pred cceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCC
Confidence 7888888999999999999999988999999999888642 11 23334556777776644320 0 11111
Q ss_pred ----------CcchhHHhCCcHHHHHHhccCC--C----hHHHHHHHHHHHHHh
Q 015496 298 ----------VEPPLFRDRFFLKSVVDLTASA--D----LDLQEKALAAIKNLL 335 (405)
Q Consensus 298 ----------~~~~~l~~~g~l~~Lv~LL~~~--D----~~v~E~al~aL~~L~ 335 (405)
...-.|++..+++.|..+|..+ | .+++...++...-++
T Consensus 419 qr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~Lvl 472 (619)
T 3c2g_A 419 ETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLL 472 (619)
T ss_dssp CCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHh
Confidence 1122466678888888887764 2 234555555444443
No 118
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=87.08 E-value=7 Score=36.06 Aligned_cols=145 Identities=14% Similarity=0.006 Sum_probs=93.1
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH--HH-HHcCc-HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh---H
Q 015496 179 LVGQLNHPDTDIRKISAWILGKASQNNPLVQK--QV-LELGA-LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG---Q 251 (405)
Q Consensus 179 Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~--~v-le~G~-lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~---~ 251 (405)
|-.-|.|.+=..|..|..-|..+.++++.... .. ...+. .+.+-+.+.+.+..+..+++-+|..++...... .
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 45678889999999999999998887664322 11 12333 344556777778889999999999988754321 1
Q ss_pred HHHH--hcCcHHHHHH-hhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHH
Q 015496 252 EMFY--VEAGDLMLQD-ILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKAL 328 (405)
Q Consensus 252 ~~f~--~~gGi~~L~~-lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al 328 (405)
..+. -...++.|+. ++.+. ..+++..+..++..++.. ..+ . ..++..+...+.+.++.++..++
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~--k~~~~~~a~~~l~~~~~~----~~~--~-----~~~~e~l~~~l~~Knpkv~~~~l 160 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSS--RATTKTQSMSCILSLCGL----DTS--I-----TQSVELVIPFFEKKLPKLIAAAA 160 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCC--CHHHHHHHHHHHHHHHHT----SSS--S-----HHHHHHHGGGGGCSCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCc--cHHHHHHHHHHHHHHHHh----cCc--H-----HHHHHHHHHHHhccCHHHHHHHH
Confidence 2221 1233455553 46654 567888888888887742 111 0 12456677778888999999888
Q ss_pred HHHHHHhc
Q 015496 329 AAIKNLLQ 336 (405)
Q Consensus 329 ~aL~~L~~ 336 (405)
..|..++.
T Consensus 161 ~~l~~~l~ 168 (278)
T 4ffb_C 161 NCVYELMA 168 (278)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887764
No 119
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=86.79 E-value=9.8 Score=36.45 Aligned_cols=147 Identities=13% Similarity=0.008 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhc--CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH
Q 015496 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL--GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPL 207 (405)
Q Consensus 130 ~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~--Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~ 207 (405)
..++...+..+.+ ...+..+.-++.-+.++........-+... ..+..+..++.+++..+|..++.++-|++--+-+
T Consensus 146 ~~l~~~l~~~~~~-~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~ 224 (304)
T 3ebb_A 146 AQFSSHLINLLNP-KGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHK 224 (304)
T ss_dssp HHHHHHHHHTTCT-TSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcCC-CCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhh
Confidence 3445444454443 335667888899999988776544444332 1234444555668999999999999998853111
Q ss_pred h--HHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHH
Q 015496 208 V--QKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKA 280 (405)
Q Consensus 208 ~--Q~~vle~G~lp~Ll~LL~s-~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA 280 (405)
. .+.. .-.+..+..++.. .+.+....++-|||+++...+...+.....|.-..+..+.+.+ .+.|+..-+
T Consensus 225 ~~~~~~~--~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~-~~~kv~~~~ 297 (304)
T 3ebb_A 225 DHNIEGK--AQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVS-EPAKVSECC 297 (304)
T ss_dssp SCCHHHH--HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCC-SSHHHHHHH
T ss_pred cCCchHH--HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCC-CchhHHHHH
Confidence 0 0111 1145555566654 3467788999999999977555444444455555566655553 366665543
No 120
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=86.63 E-value=17 Score=40.91 Aligned_cols=109 Identities=13% Similarity=0.061 Sum_probs=74.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcC-
Q 015496 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQN- 204 (405)
Q Consensus 127 ~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aqN- 204 (405)
|-|.+.+.+++..+-++ +.+.|..|.+-|..+-.+. ++|..+..+|. +.++.+|..|+.+|-+..+.
T Consensus 24 ~~Dv~~Le~lv~~ly~p--~~~~r~qA~~~L~q~q~sp---------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~ 92 (1073)
T 3gjx_A 24 KLDINLLDNVVNCLYHG--EGAQQRMAQEVLTHLKEHP---------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTR 92 (1073)
T ss_dssp CCSHHHHHHHHHTTTCS--SHHHHHHHHHHHHTSSCCS---------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHcCc---------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Confidence 33566666777776665 4677888888888776554 36787778775 46899999999999999874
Q ss_pred ---ChHhHHHHHHcCcHHHHHHhhcCC-----CHHHHHHHHHHHHHHhcC
Q 015496 205 ---NPLVQKQVLELGALSKLMKMVKSS-----FVEEAVKALYTVSSLIRN 246 (405)
Q Consensus 205 ---N~~~Q~~vle~G~lp~Ll~LL~s~-----~~~v~~kAl~ALS~lir~ 246 (405)
-|..+...++...+..+.+...++ ++.++.|..-+++.+++.
T Consensus 93 W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~ 142 (1073)
T 3gjx_A 93 WKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQ 142 (1073)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHH
Confidence 244555566666666666654432 345667777777777654
No 121
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=86.34 E-value=2.1 Score=36.75 Aligned_cols=68 Identities=12% Similarity=0.127 Sum_probs=55.0
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcC-ChHhHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHH
Q 015496 176 LSVLVGQLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSL 243 (405)
Q Consensus 176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqN-N~~~Q~~vle~G~lp~Ll~LL~s------~~~~v~~kAl~ALS~l 243 (405)
+..|.+-|++.++.++..|..+|-++++| -+.++..|.....+..|++++.. .+..|+.|.+.-|-.-
T Consensus 40 ~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 40 PWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 44555667899999999999999999999 56788888888999999999974 3568888877665554
No 122
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=85.97 E-value=2.1 Score=37.40 Aligned_cols=67 Identities=13% Similarity=0.173 Sum_probs=52.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcC-ChHhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHH
Q 015496 176 LSVLVGQLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSS 242 (405)
Q Consensus 176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqN-N~~~Q~~vle~G~lp~Ll~LL~s-~~~~v~~kAl~ALS~ 242 (405)
+..|.+-|++.++.++..|..+|-.+++| -+.++..|.....+..|++++.. .++.|+.|++..|-.
T Consensus 54 ~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~ 122 (163)
T 1x5b_A 54 LKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVE 122 (163)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 33455667889999999999999999999 46778777777888889998875 456888887765544
No 123
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=85.90 E-value=24 Score=34.39 Aligned_cols=182 Identities=10% Similarity=0.060 Sum_probs=126.4
Q ss_pred HHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcC---cHHHHHHhhcCC
Q 015496 152 RALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELG---ALSKLMKMVKSS 228 (405)
Q Consensus 152 ~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G---~lp~Ll~LL~s~ 228 (405)
.+-.-|++++.....|.-+...+.+..+.++...++=+|-..|...+-.+-..+...-..++..+ .+...-+||.++
T Consensus 142 ~~G~mLRecir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~ 221 (341)
T 1upk_A 142 NCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE 221 (341)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC
Confidence 33444555555555566566666677788888999999999999999999888887777777654 466777899998
Q ss_pred CHHHHHHHHHHHHHHhcC--ChhhHHHHHh-cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh
Q 015496 229 FVEEAVKALYTVSSLIRN--NLAGQEMFYV-EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (405)
Q Consensus 229 ~~~v~~kAl~ALS~lir~--~~~~~~~f~~-~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~ 305 (405)
+=-++.+++--||.++-+ |......++. ..-+..++.+|+++ +-.+|..|...+--++.++ +-++.....+..
T Consensus 222 NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~--sk~Iq~EAFhVFKvFVANP--~K~~~I~~IL~~ 297 (341)
T 1upk_A 222 NYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK--SRNIQFEAFHVFKVFVANP--NKTQPILDILLK 297 (341)
T ss_dssp SHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHCS--SCCHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc--hhchhhhhhhheeeeeeCC--CCChHHHHHHHH
Confidence 877899999999998765 5555555554 35688999999987 4567889998888777642 233344455544
Q ss_pred C--CcHHHHHHhccCC--ChHHHHHHHHHHHHHhcC
Q 015496 306 R--FFLKSVVDLTASA--DLDLQEKALAAIKNLLQL 337 (405)
Q Consensus 306 ~--g~l~~Lv~LL~~~--D~~v~E~al~aL~~L~~~ 337 (405)
+ .++..|-++.... |.++.+.=...+..+...
T Consensus 298 Nr~kLl~fl~~f~~d~~eDeqF~dEK~~lI~~I~~L 333 (341)
T 1upk_A 298 NQAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDL 333 (341)
T ss_dssp THHHHHHHHHHTTTTC-CCSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHHhC
Confidence 3 6666666665533 555655444445555443
No 124
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=85.84 E-value=2.1 Score=37.76 Aligned_cols=69 Identities=16% Similarity=0.141 Sum_probs=55.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHh
Q 015496 176 LSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLI 244 (405)
Q Consensus 176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN-~~~Q~~vle~G~lp~Ll~LL~s------~~~~v~~kAl~ALS~li 244 (405)
+..|.+-|++.++.++..|..+|-++++|- +.++..|.....+..|++++.. .+..|+.|++..|-.-.
T Consensus 52 ~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 52 VRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 445666778999999999999999999994 5678778888899999999963 24688888877666543
No 125
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=85.62 E-value=2 Score=36.52 Aligned_cols=68 Identities=15% Similarity=0.176 Sum_probs=52.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 015496 176 LSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 243 (405)
Q Consensus 176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN-~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~l 243 (405)
+..|.+-|.+.++.++..|..+|-++++|- +..+..|.....+..|+++++..++.|+.+.+..|-+-
T Consensus 44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W 112 (140)
T 3ldz_A 44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEW 112 (140)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 445566678899999999999999999984 55666666667788888888767788888876655543
No 126
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=84.95 E-value=15 Score=37.61 Aligned_cols=121 Identities=13% Similarity=0.107 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHHccCC-CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh
Q 015496 146 SLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (405)
Q Consensus 146 t~e~k~~AL~~L~~Lve~-iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~L 224 (405)
+...|.-|.+.+-.+... .+.++. .+..++.++...+..||.+|..-|..+|.+ ..+. .....|.+|
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~------kiaDvL~Ql 108 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLP------RVADILTQL 108 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHH------HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhh------hHHHHHHHH
Confidence 345566666666655433 233333 455666677777889999999999999987 3222 245788999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHH-HHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM-LQDILGNSSFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 225 L~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~-L~~lL~s~~~~~kl~~kA~~lLs~L~~ 289 (405)
|.+++.......=.+|-++.+.++.+ -+.. +.++..+ +..+|.+++.+|..=..
T Consensus 109 Lqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~---~e~~Rer~lkFi~~kl~ 163 (507)
T 3u0r_A 109 LQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQG---EDIVRERAIKFLSTKLK 163 (507)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHS---CHHHHHHHHHHHHHHGG
T ss_pred HhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHccc---chHHHHHHHHHHHHHHh
Confidence 99988776777777888888877643 2222 2333333 45688888888776554
No 127
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=84.06 E-value=17 Score=34.09 Aligned_cols=141 Identities=14% Similarity=0.054 Sum_probs=87.8
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhc----CChhhHHHHH
Q 015496 180 VGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIR----NNLAGQEMFY 255 (405)
Q Consensus 180 v~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir----~~~~~~~~f~ 255 (405)
...|-+.+..-+..|+..|......+++.....++. .++-+.--+.+.+..+..+++-.|..++. .+....+. -
T Consensus 52 ~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDl-l~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~-e 129 (266)
T 2of3_A 52 MSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDL-LLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE-E 129 (266)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHH-HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH-H
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH-H
Confidence 445566677888888888888777666443332221 22222212235577787788888777642 11111100 0
Q ss_pred hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015496 256 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (405)
Q Consensus 256 ~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~ 335 (405)
..--+|.|+.=+.+. ..++|..+-.++..++.- .--..+.+.+++-+.+.+...++-++..+.++.
T Consensus 130 a~~~lP~LveKlGd~--k~~vR~~~r~il~~l~~v------------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li 195 (266)
T 2of3_A 130 VSAFVPYLLLKTGEA--KDNMRTSVRDIVNVLSDV------------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYI 195 (266)
T ss_dssp HHHHHHHHHHGGGCS--SHHHHHHHHHHHHHHHHH------------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--hHHHHHHHHHHHHHHHHH------------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 011357777777765 466888888888777631 112357778888899999999999999998887
Q ss_pred c
Q 015496 336 Q 336 (405)
Q Consensus 336 ~ 336 (405)
.
T Consensus 196 ~ 196 (266)
T 2of3_A 196 T 196 (266)
T ss_dssp H
T ss_pred H
Confidence 4
No 128
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=83.21 E-value=0.5 Score=44.12 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=27.5
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHH
Q 015496 178 VLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYT 239 (405)
Q Consensus 178 ~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~A 239 (405)
.+..+++++++.||..|+..+. .+.|..++++++..||..+...
T Consensus 78 ~l~~L~~D~~~~VR~~aA~~L~------------------~~~L~~ll~D~d~~VR~~aA~~ 121 (244)
T 1lrv_A 78 ALTPLIRDSDEVVRRAVAYRLP------------------REQLSALMFDEDREVRITVADR 121 (244)
T ss_dssp GGGGGTTCSSHHHHHHHHTTSC------------------SGGGGGTTTCSCHHHHHHHHHH
T ss_pred HHHHHccCcCHHHHHHHHHHCC------------------HHHHHHHHcCCCHHHHHHHHHh
Confidence 4556778888999988886431 1345555655566666555553
No 129
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=82.60 E-value=0.46 Score=44.36 Aligned_cols=21 Identities=19% Similarity=0.102 Sum_probs=15.3
Q ss_pred HHHHHhcCCCCHHHHHHHHHH
Q 015496 177 SVLVGQLNHPDTDIRKISAWI 197 (405)
Q Consensus 177 ~~Lv~lL~s~~~~Ir~~Aa~~ 197 (405)
+.|..+++.+++.||..++.-
T Consensus 101 ~~L~~ll~D~d~~VR~~aA~~ 121 (244)
T 1lrv_A 101 EQLSALMFDEDREVRITVADR 121 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHh
Confidence 346667778888888887763
No 130
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=82.22 E-value=7.1 Score=33.50 Aligned_cols=70 Identities=16% Similarity=0.106 Sum_probs=54.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhc
Q 015496 176 LSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIR 245 (405)
Q Consensus 176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN-~~~Q~~vle~G~lp~Ll~LL~s------~~~~v~~kAl~ALS~lir 245 (405)
+..|.+-|.+.++.++..|..+|-++++|- +.++..|.....+..|++++.. .+..|+.|.+..|-+-..
T Consensus 50 ~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 50 TRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 445556678899999999999999999985 3456777777889999999974 357888888776665443
No 131
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=78.67 E-value=6.5 Score=33.90 Aligned_cols=67 Identities=12% Similarity=0.059 Sum_probs=51.9
Q ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHH-HHHhhcC---CCHHHHHHHHHHHHH
Q 015496 176 LSVLVGQLN-HPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSK-LMKMVKS---SFVEEAVKALYTVSS 242 (405)
Q Consensus 176 i~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aqNN-~~~Q~~vle~G~lp~-Ll~LL~s---~~~~v~~kAl~ALS~ 242 (405)
+..|.+-|+ +.++.++..|..+|-++++|- +..+..|.....+.. |++++.. ++..|+.|++..|-.
T Consensus 55 ~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~ 127 (157)
T 1elk_A 55 LRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQS 127 (157)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Confidence 345566666 589999999999999999995 788888888888988 8898853 235788887765554
No 132
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=77.91 E-value=5.5 Score=33.69 Aligned_cols=89 Identities=13% Similarity=0.119 Sum_probs=65.2
Q ss_pred HHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHh
Q 015496 236 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDL 315 (405)
Q Consensus 236 Al~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~L 315 (405)
.+-.|+-+++..+.+... .+..|.+-|++. ++.++..|+.++-.++. |.++.....+.+..++..++.+
T Consensus 25 ~ileicD~I~~~~~~~k~-----a~rai~Krl~~~--n~~~ql~AL~LLe~~vk----NcG~~f~~evas~~Fl~el~~l 93 (140)
T 3ldz_A 25 LILDICDKVGQSRTGPKD-----CLRSIMRRVNHK--DPHVAMQALTLLGACVS----NCGKIFHLEVCSRDFASEVSNV 93 (140)
T ss_dssp HHHHHHHHHTTSTTHHHH-----HHHHHHHHHTCS--SHHHHHHHHHHHHHHHH----HSCHHHHHHHSSHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcCHHH-----HHHHHHHHHcCC--ChHHHHHHHHHHHHHHH----hcCHHHHHHHhhHHHHHHHHHH
Confidence 555677777776543322 356677777765 56789999998888876 3555555566667888889888
Q ss_pred ccCCChHHHHHHHHHHHHHh
Q 015496 316 TASADLDLQEKALAAIKNLL 335 (405)
Q Consensus 316 L~~~D~~v~E~al~aL~~L~ 335 (405)
+...++.|+++++..+...+
T Consensus 94 ~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 94 LNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHSCHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHH
Confidence 87789999999998887765
No 133
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=77.11 E-value=6.2 Score=35.82 Aligned_cols=67 Identities=16% Similarity=0.204 Sum_probs=51.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHH
Q 015496 176 LSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSS 242 (405)
Q Consensus 176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN-~~~Q~~vle~G~lp~Ll~LL~s~-~~~v~~kAl~ALS~ 242 (405)
+..|.+-|.+.++.++..|..+|-++++|- +..+..|.....+..|++++.+. +..|+.+++.-+-.
T Consensus 44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~ 112 (220)
T 1dvp_A 44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQT 112 (220)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 344566678899999999999999999995 55777777777888888888653 46788877655444
No 134
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=76.35 E-value=5.5 Score=36.47 Aligned_cols=69 Identities=14% Similarity=0.216 Sum_probs=52.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh-HhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHh
Q 015496 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLI 244 (405)
Q Consensus 176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~-~~Q~~vle~G~lp~Ll~LL~s-~~~~v~~kAl~ALS~li 244 (405)
+..|.+-|++.++.++..|..+|-++++|-. ..+..|.....+..|.++++. .+..|+.|++..|-.-.
T Consensus 47 ~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 47 VNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 4456667789999999999999999999844 467777777788888888865 34678888777665543
No 135
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=74.70 E-value=7.8 Score=40.85 Aligned_cols=160 Identities=16% Similarity=0.098 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcC
Q 015496 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS 227 (405)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s 227 (405)
-.|+.+.+.|.-+ ..++.. ...+..++..+..+.=++|-.+.-.|..+ .+...+ -.+.++.++.-|.+
T Consensus 243 PVRETaAQtLGaL-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~DLL~~---Ld~Vv~aVL~GL~D 310 (800)
T 3oc3_A 243 PVRDAAAYLLSRI-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL---KEFVED---KDGLCRKLVSLLSS 310 (800)
T ss_dssp HHHHHHHHHHHHH-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---GGGCCC---HHHHHHHHHHHTTC
T ss_pred ehHHHHHHHHHHH-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH---HHHHHH---HHHHHHHHHhhcCC
Confidence 3555555555555 333332 34556666666677778888777777776 122221 13567888888999
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCC-CccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhC
Q 015496 228 SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS-SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR 306 (405)
Q Consensus 228 ~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~-~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~ 306 (405)
.++.|+.-|..+|..++ .+.....++ ..|-.+|.+- .-+. -......+|+.||..+ .. .-...
T Consensus 311 ~DDDVRAVAAetLiPIA--~p~~l~~LL-----~iLWd~L~~LDDLSA-STgSVMdLLAkL~s~p---~~-----a~~dp 374 (800)
T 3oc3_A 311 PDEDIKLLSAELLCHFP--ITDSLDLVL-----EKCWKNIESEELISV-SKTSNLSLLTKIYREN---PE-----LSIPP 374 (800)
T ss_dssp SSHHHHHHHHHHHTTSC--CSSTHHHHH-----HHHHHHHHTCCSCCT-THHHHHHHHHHHHHHC---TT-----CCCCS
T ss_pred cccHHHHHHHHHhhhhc--chhhHHHHH-----HHHHHHhhhhcccch-hhHHHHHHHHHHHcCC---cc-----cccCh
Confidence 89999999999999998 344333332 3344444321 0111 2345788999999752 11 11123
Q ss_pred CcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015496 307 FFLKSVVDLTASADLDLQEKALAAIKNLL 335 (405)
Q Consensus 307 g~l~~Lv~LL~~~D~~v~E~al~aL~~L~ 335 (405)
..+|.|-.+|++.-..||..++++|..++
T Consensus 375 ~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 375 ERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp GGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 88999999999999999999999998877
No 136
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=72.93 E-value=7.9 Score=33.62 Aligned_cols=89 Identities=13% Similarity=0.090 Sum_probs=63.8
Q ss_pred HHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHh
Q 015496 236 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDL 315 (405)
Q Consensus 236 Al~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~L 315 (405)
.+-.|+-+++..+.+... .+..|.+-|++. ++.++..|+.++-.++. |..+.+...+.+..++..|+.+
T Consensus 35 ~~leicD~I~~~~~~~ke-----A~ral~krl~~~--n~~vql~AL~LLd~~vk----NcG~~Fh~evas~~Fl~el~~l 103 (163)
T 1x5b_A 35 LIMDICDKVGSTPNGAKD-----CLKAIMKRVNHK--VPHVALQALTLLGACVA----NCGKIFHLEVCSRDFATEVRAV 103 (163)
T ss_dssp HHHHHHHHHHHSSSHHHH-----HHHHHHHHHTCS--SHHHHHHHHHHHHHHHH----HTCHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCccHHH-----HHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----HhhHHHHHHHhhHHHHHHHHHH
Confidence 344567777765433222 345677777765 56788999999988886 3555566667777889999888
Q ss_pred ccC-CChHHHHHHHHHHHHHh
Q 015496 316 TAS-ADLDLQEKALAAIKNLL 335 (405)
Q Consensus 316 L~~-~D~~v~E~al~aL~~L~ 335 (405)
+.. .++.|+++++..|..-.
T Consensus 104 ~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 104 IKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHTTCCHHHHHHHHHHHHHHH
T ss_pred HccCCCHHHHHHHHHHHHHHH
Confidence 876 58899999998777665
No 137
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=72.70 E-value=14 Score=31.62 Aligned_cols=87 Identities=16% Similarity=0.104 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcC------CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHH
Q 015496 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN------HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKL 221 (405)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~------s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~L 221 (405)
=.|+.-|..+...+...+....|.+.|.+..+-.-|. -++..||..-..+|.++ |-.++.+.+.|.-..+
T Consensus 35 ~~KlklL~~V~~~l~k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~l----PI~~e~Lk~SglGkvv 110 (145)
T 2xpp_A 35 TGKIENVEEISDILMSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTM----KIHKEHLVTSGVGKIV 110 (145)
T ss_dssp CHHHHHHHHHHHHHTCTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS----CCCHHHHHHHCHHHHH
T ss_pred HHHHhhHHHHHHHHhhHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHC----CCCHHHhhcCCCCcch
Confidence 3678888999998889999999999999999887775 16889999999999886 4345666666555555
Q ss_pred HHhhcCCC--HHHHHHHHH
Q 015496 222 MKMVKSSF--VEEAVKALY 238 (405)
Q Consensus 222 l~LL~s~~--~~v~~kAl~ 238 (405)
+-+-+++. ++.+..|-.
T Consensus 111 ~~l~k~~~et~~nk~la~~ 129 (145)
T 2xpp_A 111 YFYSINPKESKEVRASAKA 129 (145)
T ss_dssp HHHHHCTTSCHHHHHHHHH
T ss_pred hhhhcCCccCHHHHHHHHH
Confidence 55555543 455555443
No 138
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=72.56 E-value=41 Score=38.03 Aligned_cols=105 Identities=11% Similarity=-0.032 Sum_probs=71.4
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhc--CCCCHHHHHHHHHHHHHHhcCC----h
Q 015496 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL--NHPDTDIRKISAWILGKASQNN----P 206 (405)
Q Consensus 133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL--~s~~~~Ir~~Aa~~Lg~~aqNN----~ 206 (405)
+.+++..+-++..+.+.|..|-+.|..+-.+. .+|..+...| .+.++.+|..|+.+|-+..+.+ +
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~ 83 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMS 83 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSC
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCC
Confidence 45566666666667777888888887764433 2666666544 4568999999999999998641 3
Q ss_pred HhHHHHHHcCcHHHHHHhhcC---CCHHHHHHHHHHHHHHhcC
Q 015496 207 LVQKQVLELGALSKLMKMVKS---SFVEEAVKALYTVSSLIRN 246 (405)
Q Consensus 207 ~~Q~~vle~G~lp~Ll~LL~s---~~~~v~~kAl~ALS~lir~ 246 (405)
..++..++...+..+...... .+..++.+...+|+.|++.
T Consensus 84 ~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~ 126 (1204)
T 3a6p_A 84 RLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKR 126 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHH
Confidence 445555555566665544321 3467899999999998776
No 139
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=72.37 E-value=53 Score=30.36 Aligned_cols=137 Identities=8% Similarity=0.019 Sum_probs=87.5
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhc-CChhhHHHHHhc
Q 015496 180 VGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIR-NNLAGQEMFYVE 257 (405)
Q Consensus 180 v~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~-s~~~~v~~kAl~ALS~lir-~~~~~~~~f~~~ 257 (405)
..+.+++..++|..|+.+||.+ . + . ...++.+-..+. .++=.|+..+.-+++.++. .++..
T Consensus 77 ~~L~~~~~deVR~~Av~lLg~~-~--~-~------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~------- 139 (240)
T 3l9t_A 77 FLAYQSDVYQVRMYAVFLFGYL-S--K-D------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK------- 139 (240)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHT-T--T-S------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-------
T ss_pred HHHHhCcchHHHHHHHHHHHhc-c--C-c------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-------
Confidence 3455788899999999999987 2 1 1 124666666443 4444788888888888874 33331
Q ss_pred CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496 258 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (405)
Q Consensus 258 gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~ 337 (405)
-++.+....+++ +.-+||-|.-.+.--+.. +.... .-.-+++.|..+...++..||..+.++|..++..
T Consensus 140 -~l~~~~~W~~d~--n~~VRR~Ase~~rpW~~~------~~~k~--dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 140 -ALPIIDEWLKSS--NLHTRRAATEGLRIWTNR------PYFKE--NPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp -THHHHHHHHHCS--SHHHHHHHHHHTCSGGGS------TTTTT--CHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHhcCC--CHHHHHHHHHhhHHHhcc------chhhc--CHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 356677777776 677888665444332210 10000 0113566666667777889999999999999987
Q ss_pred ChhhHHH
Q 015496 338 RTTEALV 344 (405)
Q Consensus 338 ~~~~~~~ 344 (405)
.++-...
T Consensus 209 ~Pd~V~~ 215 (240)
T 3l9t_A 209 FPDLVKI 215 (240)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 6554333
No 140
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=71.61 E-value=11 Score=32.30 Aligned_cols=89 Identities=8% Similarity=0.096 Sum_probs=65.2
Q ss_pred HHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHh
Q 015496 236 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDL 315 (405)
Q Consensus 236 Al~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~L 315 (405)
..-.|+-+++..+.+-. .++..|.+-|+++ ++.++..|+.++-.++. |.++.+...+.+..|+..|+.+
T Consensus 21 ~~leicD~I~~~~~~~k-----~a~rai~krl~~~--n~~vql~AL~LLe~~vk----NCG~~fh~evas~~Fl~eL~kl 89 (148)
T 1mhq_A 21 AIQNFCEQVNTDPNGPT-----HAPWLLAHKIQSP--QEKEALYALTVLEMCMN----HCGEKFHSEVAKFRFLNELIKV 89 (148)
T ss_dssp HHHHHHHHHHHSSHHHH-----HHHHHHHHHHTCS--SHHHHHHHHHHHHHHHH----HSCHHHHHHHTSHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCccHH-----HHHHHHHHHhcCC--CHHHHHHHHHHHHHHHH----HcCHHHHHHHhhHHHHHHHHHH
Confidence 34456667666543222 2356677777765 67889999999999886 4566666677788999999999
Q ss_pred ccC------CChHHHHHHHHHHHHHh
Q 015496 316 TAS------ADLDLQEKALAAIKNLL 335 (405)
Q Consensus 316 L~~------~D~~v~E~al~aL~~L~ 335 (405)
+.. .+..|+++++..+..-+
T Consensus 90 ~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 90 LSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp TCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HccccCCCCCCHHHHHHHHHHHHHHH
Confidence 874 47899999998888775
No 141
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=71.12 E-value=15 Score=31.45 Aligned_cols=109 Identities=10% Similarity=0.126 Sum_probs=75.6
Q ss_pred cHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccC
Q 015496 217 ALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (405)
Q Consensus 217 ~lp~Ll~LL~s~~-~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~ 295 (405)
.+..++.-..++. .+.--..+-.|+-+++..+.+-.. .+..|.+-|++. ++.++..|+.++-.++. |.
T Consensus 11 ~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~-----a~ral~krl~~~--n~~v~l~AL~LLe~cvk----NC 79 (149)
T 3g2s_A 11 TLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPL-----ATRLLAHKIQSP--QEWEAIQALTVLETCMK----SC 79 (149)
T ss_dssp CHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHH-----HHHHHHHHHTCS--SHHHHHHHHHHHHHHHH----HC
T ss_pred cHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHH-----HHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----hc
Confidence 4455555555443 111223566777788776543222 356777777765 67889999999998886 46
Q ss_pred CCCcchhHHhCCcHHHHHHhccC------CChHHHHHHHHHHHHHhc
Q 015496 296 HKVEPPLFRDRFFLKSVVDLTAS------ADLDLQEKALAAIKNLLQ 336 (405)
Q Consensus 296 ~~~~~~~l~~~g~l~~Lv~LL~~------~D~~v~E~al~aL~~L~~ 336 (405)
.+.+...+.+..|+..|+.++.. .+..|+++++..+..-+.
T Consensus 80 G~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 80 GKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp CHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 66666677778899999999863 578999999988887763
No 142
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=69.95 E-value=8.1 Score=33.86 Aligned_cols=109 Identities=10% Similarity=0.119 Sum_probs=74.1
Q ss_pred cHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccC
Q 015496 217 ALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (405)
Q Consensus 217 ~lp~Ll~LL~s~~-~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~ 295 (405)
.+..+|.-..++. .+.--..+-.|+-+++..+.+... .+..|.+-|++. +..++..|+.++-.++.+ .
T Consensus 13 ~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~-----A~ral~krl~~~--n~~vql~AL~LLd~~vkN----C 81 (171)
T 1juq_A 13 SLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQI-----AVRLLAHKIQSP--QEWEALQALTVLEACMKN----C 81 (171)
T ss_dssp CHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHH-----HHHHHHHHHTCS--SHHHHHHHHHHHHHHHHH----S
T ss_pred cHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHH-----HHHHHHHHhcCC--CHHHHHHHHHHHHHHHHH----c
Confidence 3555555555432 111123455777777776543222 356777778876 678899999999998863 5
Q ss_pred CCCcchhHHhCCcHHHHHHhccC------CChHHHHHHHHHHHHHhc
Q 015496 296 HKVEPPLFRDRFFLKSVVDLTAS------ADLDLQEKALAAIKNLLQ 336 (405)
Q Consensus 296 ~~~~~~~l~~~g~l~~Lv~LL~~------~D~~v~E~al~aL~~L~~ 336 (405)
.+.+...+.+..++..|+.++.. .+..|+++++..|..-..
T Consensus 82 G~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 82 GRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 55566667778899999999863 378999999988887763
No 143
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=66.43 E-value=94 Score=34.88 Aligned_cols=137 Identities=11% Similarity=0.102 Sum_probs=75.7
Q ss_pred CCHHHHHHHHHHHHHHhcCChHhHH-HHHHcCcHHHHHHhhcCCC-----HHHHHHHHHHHHHHhc---CChhhHHHHHh
Q 015496 186 PDTDIRKISAWILGKASQNNPLVQK-QVLELGALSKLMKMVKSSF-----VEEAVKALYTVSSLIR---NNLAGQEMFYV 256 (405)
Q Consensus 186 ~~~~Ir~~Aa~~Lg~~aqNN~~~Q~-~vle~G~lp~Ll~LL~s~~-----~~v~~kAl~ALS~lir---~~~~~~~~f~~ 256 (405)
.+-.....++|++|.++..-..-.+ .++ -..++.|+.+..... .-++...+|.+|...| .|+...+
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~L-p~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~---- 565 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFL-VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK---- 565 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH----
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchH-HHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH----
Confidence 3577889999999999854332222 222 245666666664432 1234455687776433 2333222
Q ss_pred cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh------CCcHHHHHHhc----cCCChHHHHH
Q 015496 257 EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD------RFFLKSVVDLT----ASADLDLQEK 326 (405)
Q Consensus 257 ~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~------~g~l~~Lv~LL----~~~D~~v~E~ 326 (405)
..+..|...+.++ +..++.-|+.++..+|.. ... .++. .-++..++..+ ..-+++-...
T Consensus 566 -~vl~~L~~~m~~~--~~~vq~aA~~af~~i~~~----C~~----~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~ 634 (1073)
T 3gjx_A 566 -TVVNKLFEFMHET--HDGVQDMACDTFIKIAQK----CRR----HFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHT 634 (1073)
T ss_dssp -HHHHHHHHHTTCC--STTHHHHHHHHHHHHHHH----TGG----GGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHH
T ss_pred -HHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHH----HHH----HHhhccccccchHHHHHHHHHHHHHHhcCHHHHHH
Confidence 2345566666654 456899999999999853 111 1111 11333333322 2224555666
Q ss_pred HHHHHHHHhcCC
Q 015496 327 ALAAIKNLLQLR 338 (405)
Q Consensus 327 al~aL~~L~~~~ 338 (405)
...+++.+++.-
T Consensus 635 lyeav~~vi~~~ 646 (1073)
T 3gjx_A 635 FYEAVGYMIGAQ 646 (1073)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhC
Confidence 677777776543
No 144
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=65.71 E-value=84 Score=29.02 Aligned_cols=119 Identities=12% Similarity=0.001 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHH-hcCCCCHHHHHHHHHHHHHHhc-CChHhHHHHHHcCcHHHHHHh
Q 015496 147 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVG-QLNHPDTDIRKISAWILGKASQ-NNPLVQKQVLELGALSKLMKM 224 (405)
Q Consensus 147 ~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~-lL~s~~~~Ir~~Aa~~Lg~~aq-NN~~~Q~~vle~G~lp~Ll~L 224 (405)
.+.|.-|...|..+ . .+ ...++.+.. +-..++=.||..++.+++..+. -.|+. .++.+...
T Consensus 85 deVR~~Av~lLg~~-~-~~-------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--------~l~~~~~W 147 (240)
T 3l9t_A 85 YQVRMYAVFLFGYL-S-KD-------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--------ALPIIDEW 147 (240)
T ss_dssp HHHHHHHHHHHHHT-T-TS-------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--------THHHHHHH
T ss_pred hHHHHHHHHHHHhc-c-Cc-------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--------HHHHHHHH
Confidence 46777777766665 2 11 113455555 3345777999999999999985 55542 67888999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcC--ChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496 225 VKSSFVEEAVKALYTVSSLIRN--NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 225 L~s~~~~v~~kAl~ALS~lir~--~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~ 289 (405)
..+++..+|.-|+-.+-.-+.. .....+. .++.|..+..++ +.-+|+-..|.|.+++.
T Consensus 148 ~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~-----ll~iL~~L~~D~--s~yVrKSVan~LrD~SK 207 (240)
T 3l9t_A 148 LKSSNLHTRRAATEGLRIWTNRPYFKENPNE-----AIRRIADLKEDV--SEYVRKSVGNALRDISK 207 (240)
T ss_dssp HHCSSHHHHHHHHHHTCSGGGSTTTTTCHHH-----HHHHHHTTTTCS--CHHHHHHHHHHHHHHHT
T ss_pred hcCCCHHHHHHHHHhhHHHhccchhhcCHHH-----HHHHHHHhcCCh--HHHHHHHHHHHHHHHhh
Confidence 9999999988776654221111 0111111 345555544444 67899999999999985
No 145
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=63.69 E-value=9.2 Score=34.96 Aligned_cols=109 Identities=13% Similarity=0.220 Sum_probs=72.8
Q ss_pred CcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhcc
Q 015496 216 GALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 294 (405)
Q Consensus 216 G~lp~Ll~LL~s~~-~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~ 294 (405)
+.+..+|.-..++. .+.--..+-.|+-+++..+.+-.. .+..|.+-|++. ++.++..|+.++-.++.+
T Consensus 7 ~~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~-----a~ral~krl~~~--n~~v~l~aL~LLe~~vkN---- 75 (226)
T 3zyq_A 7 GTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKY-----AVNSIKKKVNDK--NPHVALYALEVMESVVKN---- 75 (226)
T ss_dssp CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHH-----HHHHHHHHHTCS--SHHHHHHHHHHHHHHHHH----
T ss_pred chHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHH-----HHHHHHHHHcCC--CHHHHHHHHHHHHHHHHh----
Confidence 34555665555543 111223556677777765443222 356677778765 677899999999998864
Q ss_pred CCCCcchhHHhCCcHHHHHHhccC-CChHHHHHHHHHHHHHh
Q 015496 295 MHKVEPPLFRDRFFLKSVVDLTAS-ADLDLQEKALAAIKNLL 335 (405)
Q Consensus 295 ~~~~~~~~l~~~g~l~~Lv~LL~~-~D~~v~E~al~aL~~L~ 335 (405)
..+.....+.+..++..|+.++.. .+..|+++++..|...+
T Consensus 76 cG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 76 CGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred cchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 455455566667788888888754 48899999998888776
No 146
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=61.77 E-value=68 Score=35.49 Aligned_cols=151 Identities=6% Similarity=-0.022 Sum_probs=92.5
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh--hHHHHHhcCc
Q 015496 182 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA--GQEMFYVEAG 259 (405)
Q Consensus 182 lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~--~~~~f~~~gG 259 (405)
++.+.++.++..+..+|+....--| ...+++.+.++.+.++|.+ ++++..|+-+|..+++.... ....++..=.
T Consensus 201 ~~~~~~~~l~~~~L~~l~s~i~wi~--~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~ 276 (980)
T 3ibv_A 201 YSNAKNYGTVGLCLQVYAQWVSWIN--INLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILN 276 (980)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTSC--HHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHHhhcC--HHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHh
Confidence 3344788999999999999997433 3456667889999999975 67889999999998877533 2222232201
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhc-cCCC-----CcchhHHh--CCcHHHHHHhccCCChHHHHHHHHHH
Q 015496 260 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE-NMHK-----VEPPLFRD--RFFLKSVVDLTASADLDLQEKALAAI 331 (405)
Q Consensus 260 i~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~-~~~~-----~~~~~l~~--~g~l~~Lv~LL~~~D~~v~E~al~aL 331 (405)
+...+..+.....|..+.++.+.++..++..-.. ...+ +....... .++++.+..++.+++.++-..++..+
T Consensus 277 L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw 356 (980)
T 3ibv_A 277 LNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFL 356 (980)
T ss_dssp HHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 1111222221123566777777777666432100 0111 00111111 26889999999999888888888777
Q ss_pred HHHhc
Q 015496 332 KNLLQ 336 (405)
Q Consensus 332 ~~L~~ 336 (405)
..++.
T Consensus 357 ~~~l~ 361 (980)
T 3ibv_A 357 SDLLV 361 (980)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76653
No 147
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=59.73 E-value=96 Score=27.65 Aligned_cols=157 Identities=18% Similarity=0.179 Sum_probs=86.8
Q ss_pred CCCHHHHHHhHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCC---------------------CCHHHHHHHHHHHHHccC
Q 015496 104 RLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNST---------------------LSLEDSQRALQELLILVE 162 (405)
Q Consensus 104 ~~s~e~l~~r~~~L~~a~~~~~~~~d~~lmk~al~~L~~~~---------------------~t~e~k~~AL~~L~~Lve 162 (405)
.+|.| -+.+.++..+.+.+ ...++|++.|++.. .+.+.....+....-|+.
T Consensus 4 ~LS~E----lq~yf~~It~a~~~----~~r~~aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~ 75 (196)
T 4atg_A 4 MLPKE----LQLYFDKILSMIKS----DMKDIAIECLEKESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIK 75 (196)
T ss_dssp GSCHH----HHHHHHHHHHHHTS----TTHHHHHHHHHHCSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred ccCHH----HHHHHHHHHHHHHh----HHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHc
Confidence 35555 24455555555443 34666777665433 122333334555555555
Q ss_pred CCC--chhHHHhcCCHHHHHHhc-C-C-CCHHHHHHHHHHHHHHhcC----ChHhHHHHHHcCcHHHHHHhhcCCC--HH
Q 015496 163 PID--NANDLSKLGGLSVLVGQL-N-H-PDTDIRKISAWILGKASQN----NPLVQKQVLELGALSKLMKMVKSSF--VE 231 (405)
Q Consensus 163 ~iD--nA~~~~~~Ggi~~Lv~lL-~-s-~~~~Ir~~Aa~~Lg~~aqN----N~~~Q~~vle~G~lp~Ll~LL~s~~--~~ 231 (405)
|.. --.-++. .+|+++.|+ . + ....+|..||.+|+.++.. ++..|..+ +..+.+.+.++. ..
T Consensus 76 N~~l~lepYlH~--LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI-----~~tl~k~l~dp~~~l~ 148 (196)
T 4atg_A 76 NKHVFIDPYLHQ--ILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRV-----LKTLKGVWMDPNRSED 148 (196)
T ss_dssp CTTCCCGGGHHH--HHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHH-----HHHHHHHHTCTTSCHH
T ss_pred CCCCChHHHHHH--HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHH-----HHHHHHHHcCCCCChH
Confidence 532 2233443 589999887 2 2 2338999999999999964 34444443 456666665543 46
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015496 232 EAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 287 (405)
Q Consensus 232 v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L 287 (405)
..--|++.|+.+- +.+...++ +|-|..+.+.- .+.|....+.++
T Consensus 149 t~YGAi~GL~~lG---~~~vr~~l----lP~l~~~~~~~-----~~~~~~~~~~~~ 192 (196)
T 4atg_A 149 SQYGALYCLSILS---KNVVNTVI----REHAEEYKRTI-----GKKKVTNLLDNV 192 (196)
T ss_dssp HHHHHHHHHHHHC---HHHHHTHH----HHHHHHHHHHT-----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhH---HHHHHHhh----hcCHHHHHHHH-----HHHHHHHHHHHH
Confidence 6778888888772 24333332 45555544432 234444444444
No 148
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=51.89 E-value=29 Score=29.67 Aligned_cols=90 Identities=13% Similarity=0.096 Sum_probs=62.0
Q ss_pred HHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHH-HHH
Q 015496 236 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKS-VVD 314 (405)
Q Consensus 236 Al~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~-Lv~ 314 (405)
..-.|+-+++..+.+... .+..|.+-|++. .+..++..|+.++-.+.. |..+.....+.+..++.. |+.
T Consensus 36 ~~leicD~I~~~~~~~k~-----a~ral~krl~~~-~n~~v~l~AL~LLd~~vk----NcG~~fh~eva~~~fl~e~Lvk 105 (157)
T 1elk_A 36 LNMEICDIINETEEGPKD-----ALRAVKKRIVGN-KNFHEVMLALTVLETCVK----NCGHRFHVLVASQDFVESVLVR 105 (157)
T ss_dssp HHHHHHHHHHHSSSHHHH-----HHHHHHHHHTTC-CCHHHHHHHHHHHHHHHH----HSCHHHHHHHTSHHHHHHHTHH
T ss_pred HHHHHHHHHhCCCccHHH-----HHHHHHHHhccC-CCHHHHHHHHHHHHHHHH----HhCHHHHHHHhhHHHHHHHHHH
Confidence 344566677665433222 346677777642 267788899999998886 356666666777789998 788
Q ss_pred hccC---CChHHHHHHHHHHHHHh
Q 015496 315 LTAS---ADLDLQEKALAAIKNLL 335 (405)
Q Consensus 315 LL~~---~D~~v~E~al~aL~~L~ 335 (405)
++.. .+..|+++++..+..-.
T Consensus 106 ~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 106 TILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HhccCCCCcHHHHHHHHHHHHHHH
Confidence 8843 35689999998877765
No 149
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=48.99 E-value=26 Score=31.60 Aligned_cols=88 Identities=6% Similarity=0.003 Sum_probs=61.4
Q ss_pred HHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhc
Q 015496 237 LYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT 316 (405)
Q Consensus 237 l~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL 316 (405)
+-.|+-+++..+.+... .+..|.+-|+++ ++.++..|+.++-.++.+ ..+.+...+.+..++..|+.++
T Consensus 26 ~leicd~i~~~~~~~k~-----a~r~l~krl~~~--n~~~~l~aL~Lle~~vkN----cG~~f~~eva~~~fl~~l~~l~ 94 (220)
T 1dvp_A 26 ILLICDEINQKDVTPKN-----AFAAIKKKMNSP--NPHSSCYSLLVLESIVKN----CGAPVHEEVFTKENCEMFSSFL 94 (220)
T ss_dssp HHHHHHHHHTTSSCHHH-----HHHHHHHHHTCS--SHHHHHHHHHHHHHHHHH----SHHHHHHHHSSHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCcCHHH-----HHHHHHHHHcCC--CHHHHHHHHHHHHHHHhc----cCHHHHHHHHhHHHHHHHHHHh
Confidence 44577777765443222 345666667765 677899999999999864 4444445566667888888887
Q ss_pred cC-CChHHHHHHHHHHHHHh
Q 015496 317 AS-ADLDLQEKALAAIKNLL 335 (405)
Q Consensus 317 ~~-~D~~v~E~al~aL~~L~ 335 (405)
.. .+..++++++..+..-.
T Consensus 95 ~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 95 ESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHCSCHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHH
Confidence 64 47899999998877765
No 150
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=44.56 E-value=2.5e+02 Score=28.00 Aligned_cols=71 Identities=11% Similarity=0.188 Sum_probs=48.5
Q ss_pred HHHHHHHHHHccCCCCchhHHHhcCCHHHHH-HhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc
Q 015496 150 SQRALQELLILVEPIDNANDLSKLGGLSVLV-GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK 226 (405)
Q Consensus 150 k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv-~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~ 226 (405)
+.-++|-|+.++-....+..+.. ++ ..+.+.++..+..++++++|+-++-..-++.+........+++.+.
T Consensus 243 ~FPaLDLLRl~v~~p~~~~~l~~------li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~ 314 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYSSDIKD------YIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETID 314 (425)
T ss_dssp CHHHHHHHHHHGGGCSCGGGGHH------HHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSC
T ss_pred ccHHHHHHHHHHcCCchHHHHHH------HHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHH
Confidence 77899999998877776654332 33 2344668999999999999999875434444433233566777664
No 151
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=39.70 E-value=2.8e+02 Score=31.15 Aligned_cols=131 Identities=8% Similarity=-0.042 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh--cCCCHHHHHHHHHHHHHHhcCC----hhhHHHHHhcCc
Q 015496 186 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV--KSSFVEEAVKALYTVSSLIRNN----LAGQEMFYVEAG 259 (405)
Q Consensus 186 ~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL--~s~~~~v~~kAl~ALS~lir~~----~~~~~~f~~~gG 259 (405)
.+++.|..|-..|..+-++ | .+...+...| .+.+..+|--|+-.|-+.++.+ ++.....++..-
T Consensus 25 ~~~~~r~~Ae~~L~~~~~~-p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~l 94 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKEK-C---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSV 94 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHH-C---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhC-c---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 3677888888888776433 2 2344444433 3345778888888888877642 333444444444
Q ss_pred HHHHHHhhcCC-CccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015496 260 DLMLQDILGNS-SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336 (405)
Q Consensus 260 i~~L~~lL~s~-~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~ 336 (405)
+..+....... ..+..++.+.+.++..++..- -|+.- ..+++.++.++.+ +...++.++.+|..|..
T Consensus 95 l~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d----~p~~W-----p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 95 MELIANGTLNILEEENHIKDALSRIVVEMIKRE----WPQHW-----PDMLIELDTLSKQ-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp HHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHH----STTTC-----TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccccccccHHHHHHHHHHHHHHHHHh----Ccccc-----hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 44444332110 125779999999999998641 12111 3577888888866 55678889998888864
No 152
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=38.82 E-value=65 Score=27.47 Aligned_cols=73 Identities=11% Similarity=0.164 Sum_probs=49.7
Q ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHH-HHHhhcCC---CHHHHHHHHHHHHHHhcCCh
Q 015496 176 LSVLVGQLN-HPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSK-LMKMVKSS---FVEEAVKALYTVSSLIRNNL 248 (405)
Q Consensus 176 i~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aqNN-~~~Q~~vle~G~lp~-Ll~LL~s~---~~~v~~kAl~ALS~lir~~~ 248 (405)
+..|.+-|. +.++.++..|..+|-++++|- +.++..|.....+.. |++++... +..|+.|.+..|-+-...++
T Consensus 55 ~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~ 133 (152)
T 3rru_A 55 VKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFP 133 (152)
T ss_dssp HHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhC
Confidence 344555555 468888889999999999984 344555655566654 77777642 35789888888877665443
No 153
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=36.78 E-value=46 Score=28.15 Aligned_cols=91 Identities=13% Similarity=0.104 Sum_probs=56.8
Q ss_pred HHHHHHHHhcCChh-hHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhC-CcHHHHH
Q 015496 236 ALYTVSSLIRNNLA-GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR-FFLKSVV 313 (405)
Q Consensus 236 Al~ALS~lir~~~~-~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~-g~l~~Lv 313 (405)
.+--|+.++++++. .... .++.|..-|.++ +..++.||+.+|.+||.+ .++.+...+.++ ..|+.+.
T Consensus 31 lm~EIA~~T~~s~~~~~~e-----im~~L~kRL~~k--~~~vk~KaL~lL~yL~~~----Gs~~f~~~~r~~~~~Ik~l~ 99 (140)
T 1vdy_A 31 KLEEICDLLRSSHVSIVKE-----FSEFILKRLDNK--SPIVKQKALRLIKYAVGK----SGSEFRREMQRNSVAVRNLF 99 (140)
T ss_dssp HHHHHHHHHHHSCHHHHHH-----HHHHHHHHHTSS--SHHHHHHHHHHHHHHTTT----SCHHHHHHHHHTTHHHHTTT
T ss_pred HHHHHHHHHHhcchhHHHH-----HHHHHHHHhcCC--CcceeehHHHHHHHHHHh----CCHHHHHHHHHhHHHHHHHH
Confidence 34456667666532 1222 356777778876 456899999999999974 556566666554 4444444
Q ss_pred HhccCCC--------hHHHHHHHHHHHHHhcC
Q 015496 314 DLTASAD--------LDLQEKALAAIKNLLQL 337 (405)
Q Consensus 314 ~LL~~~D--------~~v~E~al~aL~~L~~~ 337 (405)
++=..+| ..||+.|-.++..|.+.
T Consensus 100 ~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d~ 131 (140)
T 1vdy_A 100 HYKGHPDPLKGDALNKAVRETAHETISAIFSE 131 (140)
T ss_dssp TCCCCCCTTTSSCHHHHHHHHHHHHHHHHTCC
T ss_pred hcCCCCCcccccchhHHHHHHHHHHHHHHhCc
Confidence 4422223 56888887777777654
No 154
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=34.06 E-value=3.4e+02 Score=26.42 Aligned_cols=128 Identities=12% Similarity=0.142 Sum_probs=70.9
Q ss_pred HHHHHHHHHHccCCCCchhHHHhcCCHHHHH-HhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcC-
Q 015496 150 SQRALQELLILVEPIDNANDLSKLGGLSVLV-GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS- 227 (405)
Q Consensus 150 k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv-~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s- 227 (405)
+.-++|-|+-++-....+..+.. ++ ..+.+..+..+..++++++|+-++-..-++.+........+++.+.+
T Consensus 180 ~FP~LDLLRl~v~~~~~~~~l~~------li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~ 253 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYSSDIKD------YIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTE 253 (362)
T ss_dssp CHHHHHHHHHHGGGCSCGGGGHH------HHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSC
T ss_pred cchHHHHHHHHhcCCChHHHHHH------HHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHH
Confidence 77899999998877776554332 33 23446689999999999999998754344444322223455555522
Q ss_pred ---CC----HHHHHH---HHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcC----C---CccHHHHHHHHHHHHHHhh
Q 015496 228 ---SF----VEEAVK---ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN----S---SFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 228 ---~~----~~v~~k---Al~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s----~---~~~~kl~~kA~~lLs~L~~ 289 (405)
.. ..++.. .++-+|......+.. ......+..++.. . ..+....-+++-++.+|+.
T Consensus 254 ~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~------~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 254 FSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD------LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC------TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred hhhcccCCCchHHHHHHHHHHHHHHHHhcccch------HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 11 123322 223333322211110 1223455555541 1 1244567788888999884
No 155
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=31.48 E-value=1.4e+02 Score=31.68 Aligned_cols=139 Identities=12% Similarity=0.035 Sum_probs=88.0
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHH--HHcCcHHHHHHhhc--------CCC--HHHHHHHHHHHHHHh
Q 015496 177 SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV--LELGALSKLMKMVK--------SSF--VEEAVKALYTVSSLI 244 (405)
Q Consensus 177 ~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~v--le~G~lp~Ll~LL~--------s~~--~~v~~kAl~ALS~li 244 (405)
..|+.-|-++.=++|--||-.|..+.......-... .+....-+|+-+|. ++. .+||+-|..+||.+
T Consensus 177 E~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL- 255 (800)
T 3oc3_A 177 EQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI- 255 (800)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-
T ss_pred HHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-
Confidence 455566667788999999999888764322100000 00023334443332 222 47899999999999
Q ss_pred cCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHH
Q 015496 245 RNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQ 324 (405)
Q Consensus 245 r~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~ 324 (405)
++-++. ...+..|+..+..+ .=.+|--+.-.|.++ ..- .. . =.++++.++..|...|.||+
T Consensus 256 ~hLp~e------~~IL~qLV~~l~~~--~WEVRHGGLLGLKYL-~DL---L~-----~--Ld~Vv~aVL~GL~D~DDDVR 316 (800)
T 3oc3_A 256 YPLIGP------NDIIEQLVGFLDSG--DWQVQFSGLIALGYL-KEF---VE-----D--KDGLCRKLVSLLSSPDEDIK 316 (800)
T ss_dssp TTTSCS------CCHHHHHTTGGGCS--CHHHHHHHHHHHHHT-GGG---CC-----C--HHHHHHHHHHHTTCSSHHHH
T ss_pred HhCChh------HHHHHHHHhhcCCC--CeeehhhhHHHHHHH-HHH---HH-----H--HHHHHHHHHhhcCCcccHHH
Confidence 776554 34455555444443 456777788888887 210 11 1 24678888899999999999
Q ss_pred HHHHHHHHHHh
Q 015496 325 EKALAAIKNLL 335 (405)
Q Consensus 325 E~al~aL~~L~ 335 (405)
..|+.+|.-++
T Consensus 317 AVAAetLiPIA 327 (800)
T 3oc3_A 317 LLSAELLCHFP 327 (800)
T ss_dssp HHHHHHHTTSC
T ss_pred HHHHHHhhhhc
Confidence 99999888877
No 156
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=29.93 E-value=2.4e+02 Score=23.46 Aligned_cols=90 Identities=7% Similarity=0.061 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHH
Q 015496 186 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQD 265 (405)
Q Consensus 186 ~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~ 265 (405)
+-+.|.....|++-+ .+.-..|+ ..+-+-+....++-+.-++|-+-+++++...-.......+-.+.+.+
T Consensus 23 Sk~~I~~LT~~a~~~-----~~~a~~Iv-----~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~ 92 (144)
T 1sz9_A 23 SRPIITTLTKLAEEN-----ISCAQYFV-----DAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKR 92 (144)
T ss_dssp CHHHHHHHHHHHHHT-----GGGHHHHH-----HHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHH
T ss_pred cHhHHHHHHHHHHHH-----HHHHHHHH-----HHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 445666655555553 33333333 33444444456777889999999999996554445555667777777
Q ss_pred hhcCCCccHHHHHHHHHHHHHH
Q 015496 266 ILGNSSFEIRLHRKAVSLVGDL 287 (405)
Q Consensus 266 lL~s~~~~~kl~~kA~~lLs~L 287 (405)
..... +...|.+...++.-=
T Consensus 93 ~~~~~--d~~~r~k~~rL~~~W 112 (144)
T 1sz9_A 93 TYLLV--DNTTRTKLINMFKLW 112 (144)
T ss_dssp HHHTS--CHHHHHHHHHHHHHH
T ss_pred HHHhC--CHHHHHHHHHHHHHH
Confidence 77653 566777777666544
No 157
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=29.82 E-value=43 Score=27.38 Aligned_cols=62 Identities=16% Similarity=0.334 Sum_probs=43.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 015496 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN 247 (405)
Q Consensus 176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~ 247 (405)
+...++-|+.+.+.|+..+.|++-+.-. -..+ +..+.+-+...+++-+...+|-+..++++.
T Consensus 10 l~~~L~~L~~s~~sI~~~s~w~l~h~~~-----a~~I-----v~~i~~~l~~~~~~~KL~~LYL~ndIl~ns 71 (132)
T 4flb_A 10 LDRKFQSVTNTMESIQGLSSWCIENKKH-----HSTI-----VYHWMKWLRRSAYPHRLNLFYLANDVIQNC 71 (132)
T ss_dssp HHHHHHHCCSSHHHHHHHHHHHHHTGGG-----HHHH-----HHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCcccHHHHHHHHHHHHHhHHH-----HHHH-----HHHHHHHHHcCChhhHHHHHHHHHHHHHHh
Confidence 4445566677789999999999986432 2222 344445555566777889999999999875
No 158
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=26.41 E-value=2.6e+02 Score=25.55 Aligned_cols=164 Identities=12% Similarity=0.127 Sum_probs=90.6
Q ss_pred CCCHHHHHHhHHHHHHHHHHcCCCCHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHH-H
Q 015496 104 RLSPSELKKRQMEIKELMEKLKTPSDAQ-LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLV-G 181 (405)
Q Consensus 104 ~~s~e~l~~r~~~L~~a~~~~~~~~d~~-lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv-~ 181 (405)
+++|+++. -++.++..+ .+..+ +..-+.+++.+= + .+.-++|-++-++-+...+..+.. ++ .
T Consensus 34 ~ls~~el~----~l~~~l~~l--~~~~~~~~~~~~ki~~~W--P--~~fP~lDllRl~~~~~~~~~~l~~------~l~~ 97 (253)
T 3gae_A 34 TFDDEILA----QIGGALHDI--DESWELLLSFANTIRSNW--E--IKTPAYDIVRLIVKKLPYSSDIKD------YIEE 97 (253)
T ss_dssp CSCHHHHH----HHHHHHTCH--HHHHHHHHHHHHHHHHHC--S--CCHHHHHHHHHHGGGCSCGGGGHH------HHHH
T ss_pred CCCHHHHH----HHHHHHhcc--cccHHHHHHHHHHHHHhC--C--ccchHHHHHHHHHcCCchHHHHHH------HHHH
Confidence 78998763 344444211 11122 223344555432 2 477899999998877766654443 22 2
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcC----C----CHHHHHHH---HHHHHHHhcCChhh
Q 015496 182 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS----S----FVEEAVKA---LYTVSSLIRNNLAG 250 (405)
Q Consensus 182 lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s----~----~~~v~~kA---l~ALS~lir~~~~~ 250 (405)
.+.+.++..+..++++++|+-++....++.+........+++.+.+ . +..++..+ ++-+|....+.+.
T Consensus 98 ~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~- 176 (253)
T 3gae_A 98 GLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS- 176 (253)
T ss_dssp HTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS-
T ss_pred hcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc-
Confidence 3345688999999999999998765456666544345555655432 1 12344332 3333333322221
Q ss_pred HHHHHhcCcHHHHHHhhcC----C---CccHHHHHHHHHHHHHHhh
Q 015496 251 QEMFYVEAGDLMLQDILGN----S---SFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 251 ~~~f~~~gGi~~L~~lL~s----~---~~~~kl~~kA~~lLs~L~~ 289 (405)
+......+..++.. . ..+....-+++-++.+|+.
T Consensus 177 -----~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 177 -----DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp -----CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 12233444454442 1 1244567788889999885
No 159
>1et1_A Parathyroid hormone; helical dimer, hormone/growth factor complex; 0.90A {Homo sapiens} SCOP: j.15.1.1 PDB: 1hpy_A 1zwa_A 1hph_A 1zwb_A 1zwd_A 1zwc_A 1zwe_A 1hth_A* 1fvy_A 3c4m_C*
Probab=26.06 E-value=35 Score=21.88 Aligned_cols=13 Identities=8% Similarity=0.246 Sum_probs=11.0
Q ss_pred HhHHHHHHHHHHc
Q 015496 112 KRQMEIKELMEKL 124 (405)
Q Consensus 112 ~r~~~L~~a~~~~ 124 (405)
+|+.||++.|+.+
T Consensus 19 ~R~~WLq~~l~~v 31 (34)
T 1et1_A 19 ERVEWLRKKLQDV 31 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 6999999999753
No 160
>1bwx_A Parathyroid hormone; peptide hormone, solution structure; NMR {Homo sapiens} SCOP: j.15.1.1 PDB: 1zwf_A 1zwg_A* 2l1x_A
Probab=25.47 E-value=36 Score=22.47 Aligned_cols=13 Identities=8% Similarity=0.246 Sum_probs=11.3
Q ss_pred HhHHHHHHHHHHc
Q 015496 112 KRQMEIKELMEKL 124 (405)
Q Consensus 112 ~r~~~L~~a~~~~ 124 (405)
+|++||++.|+.+
T Consensus 19 ~R~~WLq~~L~~v 31 (39)
T 1bwx_A 19 ERVEWLRKKLQDV 31 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 5999999999865
No 161
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=25.23 E-value=4.8e+02 Score=25.33 Aligned_cols=133 Identities=11% Similarity=0.050 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhh--
Q 015496 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMK-MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL-- 267 (405)
Q Consensus 191 r~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~-LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL-- 267 (405)
++.+.-++.-++-..+.. +.+..++. .+.+..+..+--++..++|+..+....++.+....-...+...+
T Consensus 180 ~FP~LDLLRl~v~~~~~~-------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcCCChH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHH
Confidence 888888888877654421 23333442 23344567788899999999876543444442211122333333
Q ss_pred --cCCC--ccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhcc---------CCChHHHHHHHHHHHHH
Q 015496 268 --GNSS--FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA---------SADLDLQEKALAAIKNL 334 (405)
Q Consensus 268 --~s~~--~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~---------~~D~~v~E~al~aL~~L 334 (405)
.+.. .+..++.-++.++.|++..... .+. +...+..+++++. ..|.+..-.++.||++|
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~--~~~------~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL 324 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTK--GNS------DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNL 324 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHH--TCS------CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHH
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhc--ccc------hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHH
Confidence 1111 1345788888999999753210 010 1234456666665 25888999999999999
Q ss_pred hcCC
Q 015496 335 LQLR 338 (405)
Q Consensus 335 ~~~~ 338 (405)
+..+
T Consensus 325 ~~~~ 328 (362)
T 3l3f_X 325 ATVE 328 (362)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 8643
No 162
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=25.01 E-value=1.7e+02 Score=24.16 Aligned_cols=50 Identities=12% Similarity=0.112 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 015496 185 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVS 241 (405)
Q Consensus 185 s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS 241 (405)
+.+.+.++.-||+|.. ++++.-++ -||..|-.+++++++.-+..++|-|+
T Consensus 32 ~~s~~~~F~yAw~Lv~--S~~~~d~~-----~GI~lLe~l~~~~~p~~~Rd~lY~LA 81 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVR--TRYNDDIR-----KGIVLLEELLPKGSKEEQRDYVFYLA 81 (126)
T ss_dssp CCCHHHHHHHHHHHTT--SSSHHHHH-----HHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHc--CCCHHHHH-----HHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 5788999999999987 55555444 37788889998876666667777555
No 163
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=24.00 E-value=1.1e+02 Score=25.98 Aligned_cols=91 Identities=20% Similarity=0.276 Sum_probs=58.4
Q ss_pred HHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHH-HHH
Q 015496 236 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKS-VVD 314 (405)
Q Consensus 236 Al~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~-Lv~ 314 (405)
.+-.|+-+++..+.+-. ..+..|.+-|+.+ .+.+++..|+.++-.++. |..+.+...+.+..++.. |+.
T Consensus 36 ~ileicD~In~~~~~pk-----eA~ral~KRl~~~-~n~~~~l~AL~LLe~cvk----NCG~~fh~eiask~Fl~e~L~k 105 (152)
T 3rru_A 36 QFMHICDIINTTQDGPK-----DAVKALKKRISKN-YNHKEIQLTLSLIDMCVQ----NCGPSFQSLIVKKEFVKENLVK 105 (152)
T ss_dssp HHHHHHHHHHHSTTHHH-----HHHHHHHHHHTTC-CBHHHHHHHHHHHHHHHH----HSCHHHHHHHSSHHHHTTTTGG
T ss_pred HHHHHHHHHhCCCccHH-----HHHHHHHHHHcCC-CChHHHHHHHHHHHHHHH----hcCHHHHHHHHhhHhHHHHHHH
Confidence 44556666665443222 2356666667642 266777788888888876 355555555655667764 677
Q ss_pred hccC---CChHHHHHHHHHHHHHhc
Q 015496 315 LTAS---ADLDLQEKALAAIKNLLQ 336 (405)
Q Consensus 315 LL~~---~D~~v~E~al~aL~~L~~ 336 (405)
++.. .+..|+++++..|...+.
T Consensus 106 l~~~~~~~~~~Vk~kil~li~~Wa~ 130 (152)
T 3rru_A 106 LLNPRYNLPLDIQNRILNFIKTWSQ 130 (152)
T ss_dssp GGSGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HhcCCCCCcHHHHHHHHHHHHHHHH
Confidence 7653 245799999999888874
No 164
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=23.71 E-value=45 Score=19.65 Aligned_cols=17 Identities=18% Similarity=0.557 Sum_probs=13.1
Q ss_pred HHHHHhHHHHHHHHHHcC
Q 015496 108 SELKKRQMEIKELMEKLK 125 (405)
Q Consensus 108 e~l~~r~~~L~~a~~~~~ 125 (405)
.++ +|+-||.++|+.+.
T Consensus 5 Q~~-rRr~wL~~ll~~vh 21 (24)
T 3h3g_B 5 QDL-RRRFFLHHLIAEIH 21 (26)
T ss_dssp HHH-HHHHHHHHHHHHHC
T ss_pred HHH-HHHHHHHHHHHHhh
Confidence 345 69999999998653
No 165
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=22.71 E-value=5.5e+02 Score=25.12 Aligned_cols=113 Identities=12% Similarity=0.118 Sum_probs=73.0
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchh---
Q 015496 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQL--- 292 (405)
Q Consensus 216 G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~--- 292 (405)
+.++.++.+..+.+.++|...+.-|.-.+........ ..++.|..+|.+. +..+.++++.+..++....+
T Consensus 63 ~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~LL~d~--d~~V~K~~I~~~tslYpl~f~~i 135 (386)
T 3o2t_A 63 NFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLL-----KLIANLNMLLRDE--NVNVVKKAILTMTQLYKVALQWM 135 (386)
T ss_dssp GGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999888888988887777777665444332 2456788888764 56788888877776642110
Q ss_pred -ccCCCC--cchhHHh-CCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015496 293 -ENMHKV--EPPLFRD-RFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (405)
Q Consensus 293 -~~~~~~--~~~~l~~-~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~ 335 (405)
.+.+.. ....... ..+-..++.++.+.+..++-.++..+..+.
T Consensus 136 ~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 136 VKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred hcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 011110 0111211 134556777788889999999888887755
No 166
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=22.15 E-value=1.4e+02 Score=33.13 Aligned_cols=160 Identities=16% Similarity=0.075 Sum_probs=86.5
Q ss_pred HHHc-CCCCHHHHHHHHHHHhhcCC---CCHHHHHHHHHHHHHccC-C---CCchhHHHhcCCHHHHHHhcCCCC-HHHH
Q 015496 121 MEKL-KTPSDAQLIQIAIDDLNNST---LSLEDSQRALQELLILVE-P---IDNANDLSKLGGLSVLVGQLNHPD-TDIR 191 (405)
Q Consensus 121 ~~~~-~~~~d~~lmk~al~~L~~~~---~t~e~k~~AL~~L~~Lve-~---iDnA~~~~~~Ggi~~Lv~lL~s~~-~~Ir 191 (405)
+..+ ..+-..+.+...++.+.... .+- .|..+|.-++-++- + +.... +...+..++.+|.++. .+||
T Consensus 786 l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~---~~~i~~~v~~~L~D~q~~EVR 861 (997)
T 1vsy_5 786 YAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEE---KNKILEFVVSNLYNEQFVEVR 861 (997)
T ss_dssp HHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTH---HHHTHHHHTTTTTCSSCHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHH---HHHHHHHHHHHhcCCccHHHH
Confidence 5555 34445566666776665422 244 77777666554331 1 11111 1245778889999999 9999
Q ss_pred HHHHHHHHHHhcCC-h-HhHHHHHH---cCc-----HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhH--HHHHhcCc
Q 015496 192 KISAWILGKASQNN-P-LVQKQVLE---LGA-----LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ--EMFYVEAG 259 (405)
Q Consensus 192 ~~Aa~~Lg~~aqNN-~-~~Q~~vle---~G~-----lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~--~~f~~~gG 259 (405)
..|+.+|+.+.++. + .....+++ ... ...+-+-. +.+...+-.|+.+||+++..+|... ..++ -+.
T Consensus 862 e~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~-~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~-P~~ 939 (997)
T 1vsy_5 862 VRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKL-SKTDIKIHGNVLGLGAIISAFPYVFPLPPWI-PKN 939 (997)
T ss_dssp HHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHH-HHHCHHHHHHHHHHHHHHTTCSCCSSCCTHH-HHH
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhccccccccccc-chHHHHHHHHHHHHHHHHhhCCCCCCCCccc-HHH
Confidence 99999999999887 5 33322221 111 11110000 0000235578888999888887643 1221 011
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496 260 DLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (405)
Q Consensus 260 i~~L~~lL~s~~~~~kl~~kA~~lLs~L~~ 289 (405)
+..|.....++ .-++.-+-.+++++=+
T Consensus 940 l~~La~~~~~~---~~i~~tvk~tlseFkr 966 (997)
T 1vsy_5 940 LSNLSSWARTS---GMTGNAAKNTISEFKK 966 (997)
T ss_dssp HHHHHTTSSSC---SSHHHHTHHHHHHHHH
T ss_pred HHHHHHHhCCC---CchHHHHHHHHHHHHh
Confidence 22222223332 2256666777777754
No 167
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=20.82 E-value=6.3e+02 Score=25.10 Aligned_cols=134 Identities=10% Similarity=0.046 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcC
Q 015496 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMK-MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN 269 (405)
Q Consensus 191 r~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~-LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s 269 (405)
++.+.-++.-++-..+.. +.|..++. .+.+.++..+--++..++|+..+....++.+....-...+...+.+
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 788888888887664422 22333332 3334456778889999999987644344444221123444444421
Q ss_pred C----C--ccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhcc---------CCChHHHHHHHHHHHHH
Q 015496 270 S----S--FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA---------SADLDLQEKALAAIKNL 334 (405)
Q Consensus 270 ~----~--~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~---------~~D~~v~E~al~aL~~L 334 (405)
. . .+..++.-++.++.|++..... .+. +..++..+++++. ..|.+..-.++.||++|
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~--~~~------~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtL 387 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTK--GNS------DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNL 387 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHH--SCS------CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHH
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhc--ccc------hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHH
Confidence 1 0 1345788888999999753210 010 1234456666665 24888999999999999
Q ss_pred hcCCh
Q 015496 335 LQLRT 339 (405)
Q Consensus 335 ~~~~~ 339 (405)
+..++
T Consensus 388 v~~~~ 392 (425)
T 3pst_A 388 ATVEP 392 (425)
T ss_dssp HHHCH
T ss_pred HhcCH
Confidence 86543
Done!