Query 015498
Match_columns 405
No_of_seqs 222 out of 755
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 06:52:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015498.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015498hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0674 Calreticulin [Posttran 100.0 3E-136 6E-141 997.2 28.6 360 1-363 1-366 (406)
2 PF00262 Calreticulin: Calreti 100.0 2E-118 5E-123 896.3 12.2 312 19-331 1-367 (367)
3 KOG0675 Calnexin [Posttranslat 100.0 4E-106 9E-111 821.5 24.9 333 21-355 43-439 (558)
4 KOG0674 Calreticulin [Posttran 100.0 5.5E-41 1.2E-45 328.7 9.9 280 3-321 8-351 (406)
5 PF00262 Calreticulin: Calreti 100.0 1.5E-32 3.2E-37 276.7 -1.1 192 92-289 115-339 (367)
6 KOG0675 Calnexin [Posttranslat 99.9 6.2E-23 1.3E-27 211.5 12.3 200 93-298 159-394 (558)
7 PLN03161 Probable xyloglucan e 50.4 1.6E+02 0.0034 30.1 10.4 25 165-190 141-165 (291)
8 PF06439 DUF1080: Domain of Un 28.2 4.2E+02 0.009 23.4 10.7 26 165-191 127-152 (185)
9 KOG0163 Myosin class VI heavy 25.7 79 0.0017 36.5 4.0 10 94-103 506-515 (1259)
10 PF10262 Rdx: Rdx family; Int 25.1 65 0.0014 25.6 2.5 22 170-191 35-56 (76)
11 PF11025 GP40: Glycoprotein GP 24.1 2.2E+02 0.0048 26.4 5.9 72 99-191 4-75 (165)
12 PF10669 Phage_Gp23: Protein g 23.1 1.3E+02 0.0028 26.3 4.0 18 341-358 33-51 (121)
13 PF15240 Pro-rich: Proline-ric 22.8 45 0.00097 31.7 1.3 16 1-17 1-16 (179)
14 PF07691 PA14: PA14 domain; I 21.9 70 0.0015 27.2 2.3 25 167-191 59-83 (145)
15 KOG1996 mRNA splicing factor [ 21.1 1.2E+02 0.0026 31.4 4.0 22 327-348 83-104 (378)
No 1
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-136 Score=997.23 Aligned_cols=360 Identities=53% Similarity=1.041 Sum_probs=346.3
Q ss_pred ChHHH--HHHHHHhhccceeeccccccC--CCcccCeeeCCcccCCCCCCceEeecCcccCCCC-Ccceeeccccchhhh
Q 015498 1 MMLKL--LVLFLFFQISVSEIFFEERFD--DGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAI 75 (405)
Q Consensus 1 ~~~~~--~~~~~~~~~~~~~~~F~E~F~--~~w~~rWv~S~~~k~~~~~G~~~~~~gk~~g~~~-d~GL~~~~~ak~yai 75 (405)
||.++ ++||++++++++.|||.|.|. ++|..||++|++++. .+|.|.+++|+|+|++. |+||||+++||||||
T Consensus 1 ~~~~~~~~~ll~~v~~~sa~Vyf~E~F~d~~~w~~rwv~skhk~~--~fG~f~ls~g~f~g~~~~DkGiqTsqd~rfya~ 78 (406)
T KOG0674|consen 1 MLPSFWVLCLLALVALASAEVYFKEEFLDEDGWENRWVQSKHKSR--DFGKFVLSAGKFYGDEEKDKGIQTSQDARFYAI 78 (406)
T ss_pred CchhHHHHHHHHHHHHHhhhhhhhhhhcCCCCceEEEEEeecccc--ccCceEeccccccCcccccccccccccceeeee
Confidence 55553 345556678888999999995 579999999999863 68999999999999988 999999999999999
Q ss_pred hcCCCCCccCCCceEEEEEEeeecccccCCceeEEecccccccccCCCCCceeeecCCCcCCCCceEEEEEeeCCCcccc
Q 015498 76 SAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPI 155 (405)
Q Consensus 76 S~k~~~f~~k~k~LVvQYeVk~e~~idCGGaYiKLl~~~~d~~~f~~~tpY~IMFGPD~Cg~~~~kvH~Il~~~~~~~~i 155 (405)
|++|++|+|++++|||||+|||+|.|+|||||||||+.++||.+|+++|||.||||||+||++|+|||+||+|+++||+|
T Consensus 79 sa~F~~FsnK~kTLv~q~tVkheQ~~dcgggyiKl~~~d~Dq~~f~ges~y~iMfGPDICG~~tkKVhvil~ykg~nhli 158 (406)
T KOG0674|consen 79 SAKFKPFSNKGKTLVIQFTVKHEQKIDCGGGYIKLFPADLDQTDFHGESPYNIMFGPDICGFGTKKVHVILNYKGKNHLI 158 (406)
T ss_pred ecccccccccCceEEEEEEecccccccCCceeEEeeecccchhhcCCCcccccccCCcccCCCCceEEEEEecccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccCCCccceeeEEeCCCCceEEEEcceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCcccCCCCCCCCCCCC
Q 015498 156 KKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYD 235 (405)
Q Consensus 156 kk~~~~~~d~~tHlYTLIl~pd~tyei~ID~~~~~~Gsl~~Dwd~~pp~~I~Dp~~~KP~DWdd~~~I~Dp~~~KPedWd 235 (405)
++.++|++|++|||||||||||+||+|+|||+.+.+|||.+||+++||++|.||.++||+||+++++|+||+++||++|+
T Consensus 159 kK~i~Ck~D~~tHlYTlIlRPd~TYeVkIDn~~~esGsle~DWdll~~KKikdP~a~KPedWDer~~I~DpeD~Kp~dwe 238 (406)
T KOG0674|consen 159 KKDIRCKDDELTHLYTLILRPDATYEVKIDNQQVESGSLEDDWDLLPPKKIKDPDAKKPEDWDEREYIPDPEDKKPQDWE 238 (406)
T ss_pred ccccccccCCcceeEEEEecCCCeeEEEEcccccccCccccccccccccccCCccccCcccchhhccCCCccccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCccccccCCCCCCCCcccccccCcceEeE
Q 015498 236 SIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGI 315 (405)
Q Consensus 236 ~~p~~I~DP~a~kP~dWd~~~dG~W~~p~I~NP~ykG~W~p~~I~NP~Ykg~W~~~~I~NP~y~~d~~~~~~~~i~~iG~ 315 (405)
.|.+||||+|+||+|||++|||+|+||||+||.|+|+|+|++|+||+|||.|.+|+|+||.|.+++++|.+.+|++|||
T Consensus 239 -~pehipDpdakKpedWddemDGEWe~P~i~nPey~gewkPkqi~np~yKg~w~hp~i~npey~~d~~ly~~~ni~~lgl 317 (406)
T KOG0674|consen 239 -KPEHIPDPDAKKPEDWDDEMDGEWEAPMIPNPEYKGEWKPKQIKNPAYKGKWIHPEIDNPEYPDDPELYHYENIGVLGL 317 (406)
T ss_pred -cccccCCcccCCcccccccccCCcCCCCCCCccccCccCcccccCccccceeeccccCCCcCCCCcceeeecccceeee
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeeecCceeeeeEecCCHHHHHHHHHHhhcc-hhHhhhcHHHHHHHH
Q 015498 316 EVWQVKAGSVYDNILICDDPAYAKQVVEEVLSN-REIEKEGFEEAEKVR 363 (405)
Q Consensus 316 ElW~~~~g~~FDNili~dd~~~A~~~~~~t~~~-~~~E~~~~~~~e~~~ 363 (405)
+||||+||+||||||||+|+++|++++++||+. +.+|++|++++++.+
T Consensus 318 dLWQVKSgtIFDN~LitdD~eyA~k~~~eTwg~~k~~ek~~~~~~~k~q 366 (406)
T KOG0674|consen 318 DLWQVKSGTIFDNFLITDDEEYAEKFANETWGKTKDAEKEMKDKADKEQ 366 (406)
T ss_pred eEEEeecceeecceEecCCHHHHHHHHHhhhcccccHHHHhhhhhhhhc
Confidence 999999999999999999999999999999998 999999999876444
No 2
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes. It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
Probab=100.00 E-value=2.3e-118 Score=896.30 Aligned_cols=312 Identities=52% Similarity=1.014 Sum_probs=236.1
Q ss_pred eccccccCCC--cccCeeeCCcccCC---CCCCceEeecCcccC-CCCCcceeeccccchhhhhcCC-CCCccCCCceEE
Q 015498 19 IFFEERFDDG--WRSRWVISDWKRSE---GKAGYFKHTAGKWHG-DPDDKGIQTHTDARHYAISAKI-PEFSNKNRTLVV 91 (405)
Q Consensus 19 ~~F~E~F~~~--w~~rWv~S~~~k~~---~~~G~~~~~~gk~~g-~~~d~GL~~~~~ak~yaiS~k~-~~f~~k~k~LVv 91 (405)
|||+|+|+++ |.+|||+|++++++ .+.|+|.+++|++++ ..+|+||||+++|||||||++| +||++++++|||
T Consensus 1 v~F~E~F~~~~~~~~rWv~S~~~k~~~~~~y~G~W~~~~~~~~~~~~~DkGLv~~~~ak~yaIS~kl~kPf~~~~k~LVv 80 (367)
T PF00262_consen 1 VYFFETFDDGDDWKSRWVQSEAKKDDEIAKYDGKWELEAGKWYPGFEGDKGLVTKSDAKHYAISAKLDKPFSNKDKDLVV 80 (367)
T ss_dssp EEEEE---SGGGGGGTEEE--SSST--------EEEEEB-SSTSSTTTTBEEEEESSSEEEEEEEEEEEEE-STTS-EEE
T ss_pred CeEeEecCCCCcccCceeeCCCcCcCccccCceEEEEecccccCCCcCceeeEeccchhhhhhhhhCCCccccCCCcEEE
Confidence 6899999975 99999999999864 568999999997775 5669999999999999999999 589999999999
Q ss_pred EEEEeeecccccCCceeEEeccccccc-ccCCCCCceeeecCCCcCCCCceEEEEEeeCC-------CccccccCCcccC
Q 015498 92 QYSIRFEQDIECGGGYIKLLSAYVNQK-KFGGDAPYSLMFGPDICGTQKKHLHVILSYQG-------QNYPIKKELECET 163 (405)
Q Consensus 92 QYeVk~e~~idCGGaYiKLl~~~~d~~-~f~~~tpY~IMFGPD~Cg~~~~kvH~Il~~~~-------~~~~ikk~~~~~~ 163 (405)
|||||||++|+|||||||||+...++. +|+++|||+||||||+|| .+++|||||||++ .+|+.++++.+.+
T Consensus 81 QYeVK~q~~idCGGaYIKLL~~~~~~~~~f~~~TpY~IMFGPD~CG-~~~kvHfI~~~~nP~~~~~~e~~l~~~p~~~~~ 159 (367)
T PF00262_consen 81 QYEVKFQQGIDCGGAYIKLLPASFDQEENFSDKTPYSIMFGPDKCG-SSNKVHFIFRHKNPITGEIEEKHLKKPPISCFT 159 (367)
T ss_dssp EEEEEETT--SEEE--EEEEBTTSSGGGG-STTS-ESEEEEEEEES-TTEEEEEEEEEE-TTTEETTEEEE-SSSSB-HH
T ss_pred EEEEEeecceeccceEEEEecCccchhhhcCCCCCceEEeCCccCC-CCceEEEEEEecCCCCCcccceecccCCccccc
Confidence 999999999999999999999988887 999999999999999999 6677999997742 3566677778899
Q ss_pred CCccceeeEEeCCCCceEEEEcceeecCCCCCCCCC--CCCCccccCCCCCCCCCCCCCcccCCCCCCCCCCCC------
Q 015498 164 DKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWD--ILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYD------ 235 (405)
Q Consensus 164 d~~tHlYTLIl~pd~tyei~ID~~~~~~Gsl~~Dwd--~~pp~~I~Dp~~~KP~DWdd~~~I~Dp~~~KPedWd------ 235 (405)
|++||||||||+|||||+|+|||+++.+|||++||+ ++||++|+||+++||+||||+++|+||+|+||+|||
T Consensus 160 D~~tHlYTLii~~dntyeI~IDg~~~~~G~L~~df~Pp~~ppk~I~Dp~d~KP~DW~d~~~I~Dp~~~KPedWdE~~p~~ 239 (367)
T PF00262_consen 160 DKLTHLYTLIIRPDNTYEIRIDGEVVKSGSLLEDFDPPFNPPKEIDDPNDKKPEDWDDREKIPDPNAKKPEDWDEDEPEF 239 (367)
T ss_dssp SSSEEEEEEEEETTTEEEEEETTEEEEEEEHHHHSE--ESS-SCEE-TTT--TTT-TTTSEEC-SSTT--TTTSSS--SE
T ss_pred CCCcceEEEEEcCCCeEEEEECCEEeeccccccccccCcCChhcccCccccCCcchhhhcccCCccccCcccccccCccc
Confidence 999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred --------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------------------CCCCCCCCCcCCCCC
Q 015498 236 --------------SIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNP------------------AYKGPWRPKRIKNPN 283 (405)
Q Consensus 236 --------------~~p~~I~DP~a~kP~dWd~~~dG~W~~p~I~NP------------------~ykG~W~p~~I~NP~ 283 (405)
++|++||||+|+||+|||+++||+|+||||+|| +|||+|+||||+||+
T Consensus 240 I~D~~a~kP~~W~edep~~IpDp~a~kP~dWdde~dGeWe~P~I~NP~C~~~gCG~w~~p~i~Np~YkG~W~pp~I~NP~ 319 (367)
T PF00262_consen 240 IPDPDAVKPEGWLEDEPEYIPDPEAKKPEDWDDEEDGEWEAPMIPNPKCKEPGCGEWKPPMIKNPNYKGKWKPPMIPNPN 319 (367)
T ss_dssp EE-TT----SS-BSSS-SEEE-TT--S-TT--CCCCSS----EEE-CGGTTS-BSS----EEE-TT--SS----EEE-TT
T ss_pred ccCccccCCcchhhCCCcccCCCCCCCCCCCCccccCCccCCccCCCcccCCCccccccccccCccccCCccccccCCcc
Confidence 689999999999999999999999999999999 999999999999999
Q ss_pred CCCCccccccCCCCCCCCcccccccCcceEeEeEeeeecCceeeeeEe
Q 015498 284 YKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILI 331 (405)
Q Consensus 284 Ykg~W~~~~I~NP~y~~d~~~~~~~~i~~iG~ElW~~~~g~~FDNili 331 (405)
|+|+|+|++|+||+|++|.+++.+.+|++||||||||++|++||||||
T Consensus 320 YkG~W~p~~I~NP~y~~d~~p~~~~~i~~ig~ElW~~~~~~~FDNi~i 367 (367)
T PF00262_consen 320 YKGEWKPRKIPNPDYFEDPNPYNFEPIGAIGFELWQMSSGIIFDNILI 367 (367)
T ss_dssp ---S----EEE-TT--SSTTTT--S-EEEEEEEEEESSS-EEEEEEEE
T ss_pred ccccccccccCCCcccCCCCccccCceeEEEEEEEeccCCceeeeEEC
Confidence 999999999999999999999999999999999999999999999998
No 3
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-106 Score=821.52 Aligned_cols=333 Identities=40% Similarity=0.774 Sum_probs=297.2
Q ss_pred cccccCCC--cccCeeeCCcccCCC------CCCceEeecCcccCCCCCcceeeccccchhhhhcCC-CCCccCCCceEE
Q 015498 21 FEERFDDG--WRSRWVISDWKRSEG------KAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKI-PEFSNKNRTLVV 91 (405)
Q Consensus 21 F~E~F~~~--w~~rWv~S~~~k~~~------~~G~~~~~~gk~~g~~~d~GL~~~~~ak~yaiS~k~-~~f~~k~k~LVv 91 (405)
|.++|+.+ |. |||.|.++|++. +.|.|.+..++-.+.++|+||++++.|||||||+.| .||+++.++|||
T Consensus 43 f~d~Fd~~~~~~-rWi~S~akk~d~~~ei~kY~G~W~~ee~~~~~~~~D~GLvvkskakhhaI~a~L~~P~~~~~~plVV 121 (558)
T KOG0675|consen 43 FADHFDGGTAST-RWILSWAKKDDIDDEIAKYDGVWDLEEPPKSHLAGDYGLVVKSKAKHHAISAELEEPFNFKEKPLVV 121 (558)
T ss_pred chhcccccccce-eeeeeecccccccchhhhccceeeeccCccccCCcccceEeeccchhhHHHhhhcCCcccCCCCeEE
Confidence 66778753 55 899999987632 357777776665567889999999999999999999 689999999999
Q ss_pred EEEEeeecccccCCceeEEecc---cccccccCCCCCceeeecCCCcCCCCceEEEEEeeCC-Cccc-----cccCCc--
Q 015498 92 QYSIRFEQDIECGGGYIKLLSA---YVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQG-QNYP-----IKKELE-- 160 (405)
Q Consensus 92 QYeVk~e~~idCGGaYiKLl~~---~~d~~~f~~~tpY~IMFGPD~Cg~~~~kvH~Il~~~~-~~~~-----ikk~~~-- 160 (405)
||||+||.+++|||||||||+. ..++++|+++|||+||||||+|| .+++|||||||++ .++. .+.++.
T Consensus 122 QYEvk~qeg~eCGGAYlKLLs~~~~~~~l~~f~dktpy~ImFGPDKCG-~~~kvhFIf~hknp~tG~~~ekh~~~pp~~l 200 (558)
T KOG0675|consen 122 QYEVKFQEGLECGGAYLKLLSQGTAGENLKNFDDKTPYTIMFGPDKCG-ETNKVHFIFRHKNPITGEISEKHLKAPPSSL 200 (558)
T ss_pred EEEEecCCCcccchhHHHhhcccccccchhccCCCCCeEEEeCccccC-CcccEEEEEeeccCCCCeeehhhccCCCccc
Confidence 9999999999999999999998 36789999999999999999999 9999999999963 4433 355553
Q ss_pred --ccCCCccceeeEEeCCCCceEEEEcceeecCCCCCCCCC--CCCCccccCCCCCCCCCCCCCcccCCCCCCCCCCCCC
Q 015498 161 --CETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWD--ILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDS 236 (405)
Q Consensus 161 --~~~d~~tHlYTLIl~pd~tyei~ID~~~~~~Gsl~~Dwd--~~pp~~I~Dp~~~KP~DWdd~~~I~Dp~~~KPedWd~ 236 (405)
..+|++||||||||+|||||+|||||++|..|||++||. ++||++|+||++.||+|||+|+.||||+|+||+|||+
T Consensus 201 ~~~~~d~~tHLYTLvl~pd~sfeI~vDg~vv~~G~ll~Df~Ppv~Pp~eI~Dp~d~KP~dWDer~kIpDpnAvKPdDWDE 280 (558)
T KOG0675|consen 201 KKPFDDKLTHLYTLVLKPDNTFEIRVDGKVVYKGSLLTDFEPPVTPPKEIPDPSDKKPEDWDERAKIPDPNAVKPDDWDE 280 (558)
T ss_pred ccccccCCceeEEEEecCCCeEEEEecCcEEEecccccccCCCCCCccccCCcccCCccchhhhhcCCCcccCCccccCc
Confidence 567999999999999999999999999999999999995 8999999999999999999999999999999999994
Q ss_pred --------------------CCCCCCCCCCCCCCCCCCCCCCCCCC-------------------CCCCCCCCCCCCCCC
Q 015498 237 --------------------IPKEIPDPKAKKPDNWDEDEDGLWKP-------------------PKIPNPAYKGPWRPK 277 (405)
Q Consensus 237 --------------------~p~~I~DP~a~kP~dWd~~~dG~W~~-------------------p~I~NP~ykG~W~p~ 277 (405)
+|.+|+||+|+||+|||+++||+|+| |||.||+|||+|.+|
T Consensus 281 ~~P~~Ipd~davkP~~Wledep~~I~DP~A~KPedWdee~dGeWeap~I~NP~C~~~~GCG~wk~p~I~NP~YKGkw~~p 360 (558)
T KOG0675|consen 281 DAPLSIPDEDAVKPEGWLEDEPEYIPDPEAQKPEDWDEEEDGEWEAPMIINPKCKEASGCGEWKPPMINNPNYKGKWILP 360 (558)
T ss_pred CCCccCCCccccCCccccccCCcccCCcccCCCCCCCccccCccccccccCchhhcCCCCCcccCcccCCCccCCCCccc
Confidence 68999999999999999999887655 466677888888888
Q ss_pred cCCCCCCCCCccccccCCCCCCCCcccccccCcceEeEeEeeeecCceeeeeEecCCHHHHHHHHHHhhcc-hhHhhhc
Q 015498 278 RIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLSN-REIEKEG 355 (405)
Q Consensus 278 ~I~NP~Ykg~W~~~~I~NP~y~~d~~~~~~~~i~~iG~ElW~~~~g~~FDNili~dd~~~A~~~~~~t~~~-~~~E~~~ 355 (405)
||.||+|+|+|+||+|+||+|+++.+++.+.+|.+||||||+|+++++|||||||+|++.|+.+++.||.. ..+|++.
T Consensus 361 mI~NP~y~G~W~PRkI~NPdyfEd~~p~~~~pIsavglElWsMs~~IlfdNi~i~~~~e~a~~~~~~tw~~K~~~~~e~ 439 (558)
T KOG0675|consen 361 MIDNPNYQGIWKPRKIPNPDYFEDDKPFTLTPISAVGLELWSMSSNILFDNIIITKDIEVAEDIANFTWLLKAAAEREK 439 (558)
T ss_pred cccCccccCccccccCCCcccccccCcccccchhhhhhhhhhcCCCceeceeEEeccHHHHHHhhhhceeeehhhcccc
Confidence 88888888889999999999999999999999999999999999999999999999999999999999999 4555443
No 4
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-41 Score=328.66 Aligned_cols=280 Identities=30% Similarity=0.480 Sum_probs=236.1
Q ss_pred HHHHHHHH-Hhhccceeecc--ccccCCCcccCeeeC-CcccCCCCCCceEeecCcccC-----CCCCcceeeccccchh
Q 015498 3 LKLLVLFL-FFQISVSEIFF--EERFDDGWRSRWVIS-DWKRSEGKAGYFKHTAGKWHG-----DPDDKGIQTHTDARHY 73 (405)
Q Consensus 3 ~~~~~~~~-~~~~~~~~~~F--~E~F~~~w~~rWv~S-~~~k~~~~~G~~~~~~gk~~g-----~~~d~GL~~~~~ak~y 73 (405)
++||++++ +++.++++..| .+.|..+|.++-..| ..+++..++|+|...+.+..| +.+.++| +|+|.
T Consensus 8 ~~ll~~v~~~sa~Vyf~E~F~d~~~w~~rwv~skhk~~~fG~f~ls~g~f~g~~~~DkGiqTsqd~rfya~----sa~F~ 83 (406)
T KOG0674|consen 8 LCLLALVALASAEVYFKEEFLDEDGWENRWVQSKHKSRDFGKFVLSAGKFYGDEEKDKGIQTSQDARFYAI----SAKFK 83 (406)
T ss_pred HHHHHHHHHHhhhhhhhhhhcCCCCceEEEEEeeccccccCceEeccccccCcccccccccccccceeeee----ecccc
Confidence 45554444 34577888888 899999998665555 888888889999877665544 4567888 99999
Q ss_pred hhhcCCC----CCccCC-------CceEE---------------EEEEeeecccccCCceeEEecccccccccCCCCCce
Q 015498 74 AISAKIP----EFSNKN-------RTLVV---------------QYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYS 127 (405)
Q Consensus 74 aiS~k~~----~f~~k~-------k~LVv---------------QYeVk~e~~idCGGaYiKLl~~~~d~~~f~~~tpY~ 127 (405)
.+|++.+ +|++++ +.+|. ||+|||+++| ||.|..|++.+ + +|++ .++
T Consensus 84 ~FsnK~kTLv~q~tVkheQ~~dcgggyiKl~~~d~Dq~~f~ges~y~iMfGPDI-CG~~tkKVhvi-l---~ykg--~nh 156 (406)
T KOG0674|consen 84 PFSNKGKTLVIQFTVKHEQKIDCGGGYIKLFPADLDQTDFHGESPYNIMFGPDI-CGFGTKKVHVI-L---NYKG--KNH 156 (406)
T ss_pred cccccCceEEEEEEecccccccCCceeEEeeecccchhhcCCCcccccccCCcc-cCCCCceEEEE-E---eccc--ccc
Confidence 9999986 577774 56665 9999999999 99999999998 6 7877 688
Q ss_pred eeecCCCcCCCCceEEE---EEeeCCCccccccCCc-ccCCCccceeeEEeCCCCceEEEEcceeecCCCCCCCCCCCCC
Q 015498 128 LMFGPDICGTQKKHLHV---ILSYQGQNYPIKKELE-CETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPP 203 (405)
Q Consensus 128 IMFGPD~Cg~~~~kvH~---Il~~~~~~~~ikk~~~-~~~d~~tHlYTLIl~pd~tyei~ID~~~~~~Gsl~~Dwd~~pp 203 (405)
++-.-..|. ++..+|| ||| ++.+|+++++.. +++++|...|.|+....- ...+.+.++||+. .
T Consensus 157 likK~i~Ck-~D~~tHlYTlIlR-Pd~TYeVkIDn~~~esGsle~DWdll~~KKi---------kdP~a~KPedWDe--r 223 (406)
T KOG0674|consen 157 LIKKDIRCK-DDELTHLYTLILR-PDATYEVKIDNQQVESGSLEDDWDLLPPKKI---------KDPDAKKPEDWDE--R 223 (406)
T ss_pred hhccccccc-cCCcceeEEEEec-CCCeeEEEEcccccccCcccccccccccccc---------CCccccCcccchh--h
Confidence 998999998 7777777 888 889999999984 689999999999765321 1446779999998 6
Q ss_pred ccccCCCCCCCCCCCCCcccCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 015498 204 RKIKAVNAKKPADWDDREYIDDPNAVKPEGYDS------IPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPK 277 (405)
Q Consensus 204 ~~I~Dp~~~KP~DWdd~~~I~Dp~~~KPedWd~------~p~~I~DP~a~kP~dWd~~~dG~W~~p~I~NP~ykG~W~p~ 277 (405)
..|+||+|+||+||+-+++||||+++||+|||+ +++|||+|+++ |+|+|.+|.||+|||.|.+|
T Consensus 224 ~~I~DpeD~Kp~dwe~pehipDpdakKpedWddemDGEWe~P~i~nPey~----------gewkPkqi~np~yKg~w~hp 293 (406)
T KOG0674|consen 224 EYIPDPEDKKPQDWEKPEHIPDPDAKKPEDWDDEMDGEWEAPMIPNPEYK----------GEWKPKQIKNPAYKGKWIHP 293 (406)
T ss_pred ccCCCccccCccccccccccCCcccCCcccccccccCCcCCCCCCCcccc----------CccCcccccCccccceeecc
Confidence 899999999999999999999999999999997 59999999998 99999999999999999999
Q ss_pred cCCCCCCCCC----------------cc---ccccCCCCCCCCcccccccCcceEeEeEeeee
Q 015498 278 RIKNPNYKGK----------------WK---IPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVK 321 (405)
Q Consensus 278 ~I~NP~Ykg~----------------W~---~~~I~NP~y~~d~~~~~~~~i~~iG~ElW~~~ 321 (405)
+|.||.|... |+ ..+++|-..++|+++ ...+|-|+|...
T Consensus 294 ~i~npey~~d~~ly~~~ni~~lgldLWQVKSgtIFDN~LitdD~ey-----A~k~~~eTwg~~ 351 (406)
T KOG0674|consen 294 EIDNPEYPDDPELYHYENIGVLGLDLWQVKSGTIFDNFLITDDEEY-----AEKFANETWGKT 351 (406)
T ss_pred ccCCCcCCCCcceeeecccceeeeeEEEeecceeecceEecCCHHH-----HHHHHHhhhccc
Confidence 9999999876 76 788999999999887 566788999854
No 5
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes. It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
Probab=99.97 E-value=1.5e-32 Score=276.70 Aligned_cols=192 Identities=34% Similarity=0.581 Sum_probs=99.7
Q ss_pred EEEEeeecccccCCceeEEecccc---cccccCCCCCceeeecCCCcCCCCceEEE---EEeeCCCccccccCCc-ccCC
Q 015498 92 QYSIRFEQDIECGGGYIKLLSAYV---NQKKFGGDAPYSLMFGPDICGTQKKHLHV---ILSYQGQNYPIKKELE-CETD 164 (405)
Q Consensus 92 QYeVk~e~~idCGGaYiKLl~~~~---d~~~f~~~tpY~IMFGPD~Cg~~~~kvH~---Il~~~~~~~~ikk~~~-~~~d 164 (405)
.|+|||++++ ||.... +|-+ + ++..- -...+++..-|-.|. .+..+|| ||+ ++.+|+|+.+.. ...+
T Consensus 115 pY~IMFGPD~-CG~~~k-vHfI-~~~~nP~~~-~~~e~~l~~~p~~~~-~D~~tHlYTLii~-~dntyeI~IDg~~~~~G 188 (367)
T PF00262_consen 115 PYSIMFGPDK-CGSSNK-VHFI-FRHKNPITG-EIEEKHLKKPPISCF-TDKLTHLYTLIIR-PDNTYEIRIDGEVVKSG 188 (367)
T ss_dssp -ESEEEEEEE-ESTTEE-EEEE-EEEE-TTTE-ETTEEEE-SSSSB-H-HSSSEEEEEEEEE-TTTEEEEEETTEEEEEE
T ss_pred CceEEeCCcc-CCCCce-EEEE-EEecCCCCC-cccceecccCCcccc-cCCCcceEEEEEc-CCCeEEEEECCEEeecc
Confidence 7999999999 999776 8877 3 22211 112467777888896 7788888 777 666999988874 4566
Q ss_pred Cccceee--EE-----eCCCCc-eEEEEcceee--cCCCCCCCCCCCCCccccCCCCCCCCCCCC--CcccCCCCCCCCC
Q 015498 165 KLTHFYT--FI-----LRPDAS-YSILIDNRER--DSGSMYTDWDILPPRKIKAVNAKKPADWDD--REYIDDPNAVKPE 232 (405)
Q Consensus 165 ~~tHlYT--LI-----l~pd~t-yei~ID~~~~--~~Gsl~~Dwd~~pp~~I~Dp~~~KP~DWdd--~~~I~Dp~~~KPe 232 (405)
.|...+. |+ -.|+.. =+=.+|-+.+ .....++||+...|++|+||++.||++|++ +++|+||+|+||+
T Consensus 189 ~L~~df~Pp~~ppk~I~Dp~d~KP~DW~d~~~I~Dp~~~KPedWdE~~p~~I~D~~a~kP~~W~edep~~IpDp~a~kP~ 268 (367)
T PF00262_consen 189 SLLEDFDPPFNPPKEIDDPNDKKPEDWDDREKIPDPNAKKPEDWDEDEPEFIPDPDAVKPEGWLEDEPEYIPDPEAKKPE 268 (367)
T ss_dssp EHHHHSE--ESS-SCEE-TTT--TTT-TTTSEEC-SSTT--TTTSSS--SEEE-TT----SS-BSSS-SEEE-TT--S-T
T ss_pred ccccccccCcCChhcccCccccCCcchhhhcccCCccccCcccccccCcccccCccccCCcchhhCCCcccCCCCCCCCC
Confidence 6666666 32 223211 1111222222 234455666655566666666666666665 5899999999999
Q ss_pred CCCC------CCCCCCCCCCCCCC--CC------CCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCcc
Q 015498 233 GYDS------IPKEIPDPKAKKPD--NW------DEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWK 289 (405)
Q Consensus 233 dWd~------~p~~I~DP~a~kP~--dW------d~~~dG~W~~p~I~NP~ykG~W~p~~I~NP~Ykg~W~ 289 (405)
|||+ ++++|+||.|..|- -| |.++.|+|+||||+||+|+|+|+|++|+||+|...=.
T Consensus 269 dWdde~dGeWe~P~I~NP~C~~~gCG~w~~p~i~Np~YkG~W~pp~I~NP~YkG~W~p~~I~NP~y~~d~~ 339 (367)
T PF00262_consen 269 DWDDEEDGEWEAPMIPNPKCKEPGCGEWKPPMIKNPNYKGKWKPPMIPNPNYKGEWKPRKIPNPDYFEDPN 339 (367)
T ss_dssp T--CCCCSS----EEE-CGGTTS-BSS----EEE-TT--SS----EEE-TT---S----EEE-TT--SSTT
T ss_pred CCCccccCCccCCccCCCcccCCCccccccccccCccccCCccccccCCccccccccccccCCCcccCCCC
Confidence 9997 58999999888732 13 6688999999999999999999999999999998743
No 6
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=6.2e-23 Score=211.54 Aligned_cols=200 Identities=28% Similarity=0.468 Sum_probs=132.4
Q ss_pred EEEeeecccccCCceeEEecccccccccCCC-CCceeeecCCC--cCCCCceEEE---EEeeCCCccccccCCcc-cCCC
Q 015498 93 YSIRFEQDIECGGGYIKLLSAYVNQKKFGGD-APYSLMFGPDI--CGTQKKHLHV---ILSYQGQNYPIKKELEC-ETDK 165 (405)
Q Consensus 93 YeVk~e~~idCGGaYiKLl~~~~d~~~f~~~-tpY~IMFGPD~--Cg~~~~kvH~---Il~~~~~~~~ikk~~~~-~~d~ 165 (405)
|++||+++- || +-.|+|-+-..-.-.+|. +-++.-+=|-. -.+.++++|+ |++ ++++++|..+-.. ..+
T Consensus 159 y~ImFGPDK-CG-~~~kvhFIf~hknp~tG~~~ekh~~~pp~~l~~~~~d~~tHLYTLvl~-pd~sfeI~vDg~vv~~G- 234 (558)
T KOG0675|consen 159 YTIMFGPDK-CG-ETNKVHFIFRHKNPITGEISEKHLKAPPSSLKKPFDDKLTHLYTLVLK-PDNTFEIRVDGKVVYKG- 234 (558)
T ss_pred eEEEeCccc-cC-CcccEEEEEeeccCCCCeeehhhccCCCcccccccccCCceeEEEEec-CCCeEEEEecCcEEEec-
Confidence 999999999 99 566776662111122332 22333333331 2446777887 566 5677777555431 121
Q ss_pred ccceeeEE---e------CCC-CceEEEEccee--ecCCCCCCCCCCCCCccccCCCCCCCCCCCCC--cccCCCCCCCC
Q 015498 166 LTHFYTFI---L------RPD-ASYSILIDNRE--RDSGSMYTDWDILPPRKIKAVNAKKPADWDDR--EYIDDPNAVKP 231 (405)
Q Consensus 166 ~tHlYTLI---l------~pd-~tyei~ID~~~--~~~Gsl~~Dwd~~pp~~I~Dp~~~KP~DWdd~--~~I~Dp~~~KP 231 (405)
+||+.++ . .|+ ..++=+-+-.. ..+..+++|||...|.+|+|+++.||++|.+. ++|+||+|+||
T Consensus 235 -~ll~Df~Ppv~Pp~eI~Dp~d~KP~dWDer~kIpDpnAvKPdDWDE~~P~~Ipd~davkP~~Wledep~~I~DP~A~KP 313 (558)
T KOG0675|consen 235 -SLLTDFEPPVTPPKEIPDPSDKKPEDWDERAKIPDPNAVKPDDWDEDAPLSIPDEDAVKPEGWLEDEPEYIPDPEAQKP 313 (558)
T ss_pred -ccccccCCCCCCccccCCcccCCccchhhhhcCCCcccCCccccCcCCCccCCCccccCCccccccCCcccCCcccCCC
Confidence 1222221 1 121 11221211111 23556889999888999999999999999884 69999999999
Q ss_pred CCCCC------CCCCCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCccccccCCC
Q 015498 232 EGYDS------IPKEIPDPKAKK---------PDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNP 296 (405)
Q Consensus 232 edWd~------~p~~I~DP~a~k---------P~dWd~~~dG~W~~p~I~NP~ykG~W~p~~I~NP~Ykg~W~~~~I~NP 296 (405)
+|||+ ++++|.||.|++ |-.=|..+.|.|.+|||.||+|+|.|+||+|+||+|...=+| .+-+|
T Consensus 314 edWdee~dGeWeap~I~NP~C~~~~GCG~wk~p~I~NP~YKGkw~~pmI~NP~y~G~W~PRkI~NPdyfEd~~p-~~~~p 392 (558)
T KOG0675|consen 314 EDWDEEEDGEWEAPMIINPKCKEASGCGEWKPPMINNPNYKGKWILPMIDNPNYQGIWKPRKIPNPDYFEDDKP-FTLTP 392 (558)
T ss_pred CCCCccccCccccccccCchhhcCCCCCcccCcccCCCccCCCCccccccCccccCccccccCCCcccccccCc-ccccc
Confidence 99997 578888888885 223367888999999999999999999999999999887443 23444
Q ss_pred CC
Q 015498 297 EF 298 (405)
Q Consensus 297 ~y 298 (405)
.|
T Consensus 393 Is 394 (558)
T KOG0675|consen 393 IS 394 (558)
T ss_pred hh
Confidence 43
No 7
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=50.42 E-value=1.6e+02 Score=30.06 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=20.4
Q ss_pred CccceeeEEeCCCCceEEEEcceeec
Q 015498 165 KLTHFYTFILRPDASYSILIDNRERD 190 (405)
Q Consensus 165 ~~tHlYTLIl~pd~tyei~ID~~~~~ 190 (405)
.--|.|++.=.|+ .-..+|||+.+.
T Consensus 141 ~dFHtYsI~Wtp~-~I~wyVDG~~iR 165 (291)
T PLN03161 141 ADFHNYTIHWNPS-EVVWYVDGTPIR 165 (291)
T ss_pred cCcEEEEEEEchh-hEEEEECCEEEE
Confidence 3459999999886 468899999886
No 8
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=28.20 E-value=4.2e+02 Score=23.36 Aligned_cols=26 Identities=0% Similarity=0.102 Sum_probs=17.9
Q ss_pred CccceeeEEeCCCCceEEEEcceeecC
Q 015498 165 KLTHFYTFILRPDASYSILIDNRERDS 191 (405)
Q Consensus 165 ~~tHlYTLIl~pd~tyei~ID~~~~~~ 191 (405)
.--|=+++++. .+++.|.|||+.+..
T Consensus 127 ~~W~~~~I~~~-g~~i~v~vnG~~v~~ 152 (185)
T PF06439_consen 127 GEWNTVRIVVK-GNRITVWVNGKPVAD 152 (185)
T ss_dssp TSEEEEEEEEE-TTEEEEEETTEEEEE
T ss_pred CceEEEEEEEE-CCEEEEEECCEEEEE
Confidence 34455555554 678999999997754
No 9
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=25.74 E-value=79 Score=36.54 Aligned_cols=10 Identities=30% Similarity=0.896 Sum_probs=5.0
Q ss_pred EEeeeccccc
Q 015498 94 SIRFEQDIEC 103 (405)
Q Consensus 94 eVk~e~~idC 103 (405)
+|-|....||
T Consensus 506 ei~f~DNqDc 515 (1259)
T KOG0163|consen 506 EIEFTDNQDC 515 (1259)
T ss_pred ceEeccchhH
Confidence 3445555555
No 10
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=25.10 E-value=65 Score=25.63 Aligned_cols=22 Identities=5% Similarity=0.054 Sum_probs=16.8
Q ss_pred eeEEeCCCCceEEEEcceeecC
Q 015498 170 YTFILRPDASYSILIDNRERDS 191 (405)
Q Consensus 170 YTLIl~pd~tyei~ID~~~~~~ 191 (405)
.+|+....+.|||.+||+.+-|
T Consensus 35 v~~~~~~~G~FEV~v~g~lI~S 56 (76)
T PF10262_consen 35 VELSPGSTGAFEVTVNGELIFS 56 (76)
T ss_dssp EEEEEESTT-EEEEETTEEEEE
T ss_pred EEEEeccCCEEEEEEccEEEEE
Confidence 4566677899999999998763
No 11
>PF11025 GP40: Glycoprotein GP40 of Cryptosporidium; InterPro: IPR021035 This entry represents proteins that are highly conserved in Cryptosporidium spp. Many members are annotated as being a 60 kDa glycoprotein.
Probab=24.06 E-value=2.2e+02 Score=26.38 Aligned_cols=72 Identities=15% Similarity=0.339 Sum_probs=37.9
Q ss_pred cccccCCceeEEecccccccccCCCCCceeeecCCCcCCCCceEEEEEeeCCCccccccCCcccCCCccceeeEEeCCCC
Q 015498 99 QDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDA 178 (405)
Q Consensus 99 ~~idCGGaYiKLl~~~~d~~~f~~~tpY~IMFGPD~Cg~~~~kvH~Il~~~~~~~~ikk~~~~~~d~~tHlYTLIl~pd~ 178 (405)
+.-+||..|+--|....-...+.-. -|+|...|.+- .-...++..++..+.+ |+- +.++
T Consensus 4 pkeeCgtsFvmWf~~GtpvaTlkcg-~YTiVyAP~k~------------------~t~PaPrYISGev~~V-tFe-ksd~ 62 (165)
T PF11025_consen 4 PKEECGTSFVMWFGEGTPVATLKCG-DYTIVYAPEKD------------------QTDPAPRYISGEVKSV-TFE-KSDS 62 (165)
T ss_pred chhhcceeEEEEecCCcceEEEecC-CEEEEEccccC------------------CCCCCCceeecceEEE-EEe-ccCC
Confidence 3457999998877664211222211 24444444432 1112233444443332 222 3689
Q ss_pred ceEEEEcceeecC
Q 015498 179 SYSILIDNRERDS 191 (405)
Q Consensus 179 tyei~ID~~~~~~ 191 (405)
|..|+|||+....
T Consensus 63 TvkIkvd~kefst 75 (165)
T PF11025_consen 63 TVKIKVDGKEFST 75 (165)
T ss_pred eEEEEECCeEccc
Confidence 9999999987653
No 12
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=23.15 E-value=1.3e+02 Score=26.34 Aligned_cols=18 Identities=17% Similarity=0.326 Sum_probs=9.1
Q ss_pred HHHHhhcc-hhHhhhcHHH
Q 015498 341 VVEEVLSN-REIEKEGFEE 358 (405)
Q Consensus 341 ~~~~t~~~-~~~E~~~~~~ 358 (405)
++..-|.. +..-.+|.++
T Consensus 33 i~~~IW~~~r~~r~~MKEE 51 (121)
T PF10669_consen 33 ITKSIWHDSRQVRIRMKEE 51 (121)
T ss_pred HHHHHhhhHHHHHHHHHHH
Confidence 34556766 4444445443
No 13
>PF15240 Pro-rich: Proline-rich
Probab=22.76 E-value=45 Score=31.73 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=8.5
Q ss_pred ChHHHHHHHHHhhccce
Q 015498 1 MMLKLLVLFLFFQISVS 17 (405)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (405)
||+.||. ++||++++|
T Consensus 1 MLlVLLS-vALLALSSA 16 (179)
T PF15240_consen 1 MLLVLLS-VALLALSSA 16 (179)
T ss_pred ChhHHHH-HHHHHhhhc
Confidence 6666654 334455554
No 14
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=21.93 E-value=70 Score=27.20 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=21.4
Q ss_pred cceeeEEeCCCCceEEEEcceeecC
Q 015498 167 THFYTFILRPDASYSILIDNRERDS 191 (405)
Q Consensus 167 tHlYTLIl~pd~tyei~ID~~~~~~ 191 (405)
+-.|||.+..++.+++.|||+.+..
T Consensus 59 ~G~y~f~~~~~d~~~l~idg~~vid 83 (145)
T PF07691_consen 59 TGTYTFSLTSDDGARLWIDGKLVID 83 (145)
T ss_dssp SEEEEEEEEESSEEEEEETTEEEEE
T ss_pred CceEEEEEEecccEEEEECCEEEEc
Confidence 4569999999999999999998753
No 15
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=21.12 E-value=1.2e+02 Score=31.37 Aligned_cols=22 Identities=18% Similarity=0.081 Sum_probs=9.4
Q ss_pred eeeEecCCHHHHHHHHHHhhcc
Q 015498 327 DNILICDDPAYAKQVVEEVLSN 348 (405)
Q Consensus 327 DNili~dd~~~A~~~~~~t~~~ 348 (405)
|||+++-.-.+.+.-+...+.+
T Consensus 83 dpi~~g~~a~~~~~~v~~EYdP 104 (378)
T KOG1996|consen 83 DPISFGPKAATDEEHVKCEYDP 104 (378)
T ss_pred CcccccccccccccchhhhcCC
Confidence 5555554443333333333333
Done!