Query 015499
Match_columns 405
No_of_seqs 343 out of 1009
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 13:41:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015499.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015499hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 1.4E-35 4.8E-40 238.4 4.4 76 207-282 1-76 (76)
2 1wj2_A Probable WRKY transcrip 100.0 4E-35 1.4E-39 236.8 3.3 75 207-281 4-78 (78)
3 2ayd_A WRKY transcription fact 100.0 7.4E-31 2.5E-35 211.0 4.2 64 55-118 11-75 (76)
4 1wj2_A Probable WRKY transcrip 100.0 2.8E-30 9.5E-35 208.6 6.1 64 55-118 14-78 (78)
5 2rpr_A Flywch-type zinc finger 68.0 2.4 8.3E-05 33.5 2.1 50 56-117 22-74 (87)
6 2rpr_A Flywch-type zinc finger 63.1 2.6 8.9E-05 33.3 1.4 59 209-280 13-74 (87)
7 1odh_A MGCM1; transcription fa 32.4 26 0.0009 31.8 2.9 22 99-120 139-160 (174)
8 1cz6_A Protein (androctonin); 28.0 14 0.00049 23.5 0.3 8 80-87 16-23 (26)
9 1odh_A MGCM1; transcription fa 12.1 1.5E+02 0.005 27.0 3.2 39 243-284 122-161 (174)
10 1xiw_B T-cell surface glycopro 9.9 40 0.0014 26.3 -1.1 27 59-85 17-53 (79)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=1.4e-35 Score=238.43 Aligned_cols=76 Identities=66% Similarity=1.271 Sum_probs=73.1
Q ss_pred CceeeecccccCCCCccchhhhcCCcccCCCCCCccccccCCCCCCcccchhhccCCCCeEEEEEecccCCCCCCC
Q 015499 207 PRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTA 282 (405)
Q Consensus 207 ~~v~v~t~s~~~~~~DGy~WRKYGQK~ikgn~~pRsYyrCt~~gC~a~K~Vqr~~~D~~~~~~tY~G~HnH~~p~~ 282 (405)
.||+|++.+++++++|||+|||||||.|||+++||+|||||.+||+|+|+|||+.+|+.+++|||+|+|||+.|..
T Consensus 1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~~ 76 (76)
T 2ayd_A 1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPPG 76 (76)
T ss_dssp CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCCC
T ss_pred CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCCC
Confidence 3789999999999999999999999999999999999999999999999999999999999999999999998863
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=4e-35 Score=236.75 Aligned_cols=75 Identities=79% Similarity=1.317 Sum_probs=69.6
Q ss_pred CceeeecccccCCCCccchhhhcCCcccCCCCCCccccccCCCCCCcccchhhccCCCCeEEEEEecccCCCCCC
Q 015499 207 PRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPT 281 (405)
Q Consensus 207 ~~v~v~t~s~~~~~~DGy~WRKYGQK~ikgn~~pRsYyrCt~~gC~a~K~Vqr~~~D~~~~~~tY~G~HnH~~p~ 281 (405)
.+|+++|.+++++++|||+|||||||.|||+++||+|||||.+||+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999884
No 3
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.96 E-value=7.4e-31 Score=211.04 Aligned_cols=64 Identities=55% Similarity=1.029 Sum_probs=59.7
Q ss_pred CCCCCCCccccccCcccCCCCCCCCCccccCCCccccceeEEecc-CCceEEEEEcCCCCCCCCC
Q 015499 55 SMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPKPQ 118 (405)
Q Consensus 55 ~~~~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~akK~ve~~~-dg~~~~i~Y~G~HnH~~p~ 118 (405)
....+|||+|||||||.|||++|||+|||||+++|+|+|+|||+. |+++++|+|+|+|||+.|.
T Consensus 11 ~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 11 FDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp SSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 345799999999999999999999999999999999999999975 7889999999999999885
No 4
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.96 E-value=2.8e-30 Score=208.55 Aligned_cols=64 Identities=53% Similarity=1.001 Sum_probs=59.5
Q ss_pred CCCCCCCccccccCcccCCCCCCCCCccccCCCccccceeEEec-cCCceEEEEEcCCCCCCCCC
Q 015499 55 SMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERS-HDGQITEIIYKGTHDHPKPQ 118 (405)
Q Consensus 55 ~~~~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~akK~ve~~-~dg~~~~i~Y~G~HnH~~p~ 118 (405)
.-+.+|||+|||||||.|||++|||+|||||+++|+|+|+|||+ .|++++.|+|+|+|||+.|.
T Consensus 14 ~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 14 VDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp CCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred CCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 34579999999999999999999999999999999999999996 57889999999999999873
No 5
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=68.03 E-value=2.4 Score=33.46 Aligned_cols=50 Identities=16% Similarity=0.361 Sum_probs=32.7
Q ss_pred CCCCCCccccccCcccCCCCCCCCCccccCC---CccccceeEEeccCCceEEEEEcCCCCCCCC
Q 015499 56 MPSDDGYNWRKYGQKHVKGSEFPRSYYKCTH---PNCEVKKLFERSHDGQITEIIYKGTHDHPKP 117 (405)
Q Consensus 56 ~~~~DGy~WRKYGQK~ikgs~~pRsYYrCt~---~~C~akK~ve~~~dg~~~~i~Y~G~HnH~~p 117 (405)
...-|||...+--+ ...+.|.+|+. ..|.|+=.... ++ ++..+.|||++.
T Consensus 22 ~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~~----~~~~~~HnH~p~ 74 (87)
T 2rpr_A 22 FLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--HR----IMVMRSHCHQPD 74 (87)
T ss_dssp EEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--TE----EEECSCCSSCCC
T ss_pred EEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--CC----EECCCCcCCCCc
Confidence 34689998776422 13468999986 37999744332 22 446789999753
No 6
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=63.12 E-value=2.6 Score=33.29 Aligned_cols=59 Identities=17% Similarity=0.384 Sum_probs=36.4
Q ss_pred eeeecccccCCCCccchhhhcCCcccCCCCCCccccccCC---CCCCcccchhhccCCCCeEEEEEecccCCCCC
Q 015499 209 VVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTN---AGCPVRKHVERASHDPKAVITTYEGKHNHDVP 280 (405)
Q Consensus 209 v~v~t~s~~~~~~DGy~WRKYGQK~ikgn~~pRsYyrCt~---~gC~a~K~Vqr~~~D~~~~~~tY~G~HnH~~p 280 (405)
++........++-|||...+--+ ...+.|.+|+. .+|.|+=.... +. + ...+.|||++.
T Consensus 13 fv~s~rG~~~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~---~~--~--~~~~~HnH~p~ 74 (87)
T 2rpr_A 13 FLRTSLGGRFLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG---HR--I--MVMRSHCHQPD 74 (87)
T ss_dssp EEEETTTEEEEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET---TE--E--EECSCCSSCCC
T ss_pred EEEcCCCCcEEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC---CC--E--ECCCCcCCCCc
Confidence 33333334557889998775321 13468999984 58999855442 11 2 35688999653
No 7
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=32.43 E-value=26 Score=31.79 Aligned_cols=22 Identities=45% Similarity=0.868 Sum_probs=14.8
Q ss_pred cCCceEEEEEcCCCCCCCCCCc
Q 015499 99 HDGQITEIIYKGTHDHPKPQLS 120 (405)
Q Consensus 99 ~dg~~~~i~Y~G~HnH~~p~~~ 120 (405)
++|..+..--+|.|+||+|...
T Consensus 139 h~~~~ifFqaKG~HDHpRPe~k 160 (174)
T 1odh_A 139 HDGRFIFFQSKGEHDHPRPETK 160 (174)
T ss_dssp ECSSBEEEEEECCCCSCCCCCH
T ss_pred EcCCEEEEecccccCCCCCCCc
Confidence 3444434445899999999863
No 8
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=27.97 E-value=14 Score=23.46 Aligned_cols=8 Identities=63% Similarity=1.381 Sum_probs=6.6
Q ss_pred CccccCCC
Q 015499 80 SYYKCTHP 87 (405)
Q Consensus 80 sYYrCt~~ 87 (405)
.|||||.+
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 59999964
No 9
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=12.15 E-value=1.5e+02 Score=26.99 Aligned_cols=39 Identities=28% Similarity=0.595 Sum_probs=25.3
Q ss_pred ccccC-CCCCCcccchhhccCCCCeEEEEEecccCCCCCCCCC
Q 015499 243 YYKCT-NAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTART 284 (405)
Q Consensus 243 YyrCt-~~gC~a~K~Vqr~~~D~~~~~~tY~G~HnH~~p~~~~ 284 (405)
-+.|. +-|=||+ +..| +|...+...=+|.|+|+.|.+..
T Consensus 122 ~~~Crgh~GyPVT-hFWr--h~~~~ifFqaKG~HDHpRPe~k~ 161 (174)
T 1odh_A 122 LIPCRGHGGFPVT-NFWR--HDGRFIFFQSKGEHDHPRPETKL 161 (174)
T ss_dssp EECCCTBTTBCCE-EEEE--ECSSBEEEEEECCCCSCCCCCHH
T ss_pred eEeccCcCCCcce-EEEE--EcCCEEEEecccccCCCCCCCcc
Confidence 34554 3455664 4444 35556667889999999998743
No 10
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=9.86 E-value=40 Score=26.32 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=19.1
Q ss_pred CCCccccccCccc--------CC--CCCCCCCccccC
Q 015499 59 DDGYNWRKYGQKH--------VK--GSEFPRSYYKCT 85 (405)
Q Consensus 59 ~DGy~WRKYGQK~--------ik--gs~~pRsYYrCt 85 (405)
..++.|-|-|... +. ...-||+||.|.
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~ 53 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCN 53 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEec
Confidence 5678999988642 23 334499999994
Done!