BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015501
(405 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From
Flaveria Bidentis
Length = 385
Score = 622 bits (1605), Expect = e-179, Method: Compositional matrix adjust.
Identities = 294/353 (83%), Positives = 326/353 (92%), Gaps = 6/353 (1%)
Query: 52 SVNQVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANH 111
S +Q+QAP+ P + +C+GVFCLTYDLKAEEETKSWKK++N+AVSGAAGMI+NH
Sbjct: 4 SSDQIQAPL------PAKQKPECFGVFCLTYDLKAEEETKSWKKIINVAVSGAAGMISNH 57
Query: 112 LLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE 171
LLFKLA+GEV GPDQPI+LKLLGSERS ALEGVAMELEDSL+PLLR+V IGI+PYE+F+
Sbjct: 58 LLFKLASGEVFGPDQPISLKLLGSERSFAALEGVAMELEDSLYPLLRQVSIGIDPYEIFQ 117
Query: 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI 231
DAEWALLIGAKPRGPGMERA LLDINGQIFAEQGKALNAVAS NVKV+VVGNPCNTNALI
Sbjct: 118 DAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNAVASPNVKVMVVGNPCNTNALI 177
Query: 232 CLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNAR 291
CLKNAP+IP KNFHALTRLDENRAKCQLALKAGVFYDKVSN+TIWGNHSTTQVPDFLNA+
Sbjct: 178 CLKNAPNIPPKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAK 237
Query: 292 INGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPE 351
I+G+PV E+I+D KWLE+ FT +Q RGG+LIKKWGRSSAASTAVSIVDA++SLVTPTPE
Sbjct: 238 IHGIPVTEVIRDRKWLEDEFTNMVQTRGGVLIKKWGRSSAASTAVSIVDAIRSLVTPTPE 297
Query: 352 GDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404
GDWFS+GVYTNGNPYGIAEDIVFSMPCRSKGDGDYE VKDVIFDDYL K+I K
Sbjct: 298 GDWFSTGVYTNGNPYGIAEDIVFSMPCRSKGDGDYEFVKDVIFDDYLSKKIKK 350
>pdb|7MDH|A Chain A, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|B Chain B, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|C Chain C, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|D Chain D, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
Length = 375
Score = 603 bits (1556), Expect = e-173, Method: Compositional matrix adjust.
Identities = 287/332 (86%), Positives = 310/332 (93%)
Query: 73 DCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL 132
DC+GVFC TYDLKAE++TKSWKK+VNIAVSGAAGMI+NHLLFKLA+GEV G DQPIALKL
Sbjct: 9 DCFGVFCTTYDLKAEDKTKSWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKL 68
Query: 133 LGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAG 192
LGSERS QALEGVAMELEDSL+PLLREV IGI+PYE+FED +WALLIGAKPRGPGMERA
Sbjct: 69 LGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAA 128
Query: 193 LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDE 252
LLDINGQIFA+QGKALNAVAS+NVKV+VVGNPCNTNALICLKNAP IPAKNFHALTRLDE
Sbjct: 129 LLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHALTRLDE 188
Query: 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFT 312
NRAKCQLALKAGVFYDKVSN+TIWGNHSTTQVPDFLNA+I+G PVKE+IK KWLEE FT
Sbjct: 189 NRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFT 248
Query: 313 ETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDI 372
T+QKRGG LI+KWGRSSAASTAVSI DA+KSLVTPTPEGDWFS+GVYT GNPYGIAEDI
Sbjct: 249 ITVQKRGGALIQKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAEDI 308
Query: 373 VFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404
VFSMPCRSKGDGDYEL DV DD+L +RI K
Sbjct: 309 VFSMPCRSKGDGDYELATDVSNDDFLWERIKK 340
>pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZE|B Chain B, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZI|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZI|B Chain B, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
Length = 327
Score = 308 bits (789), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 161/309 (52%), Positives = 214/309 (69%), Gaps = 3/309 (0%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
K V +AV+GAAG I LLF++AAGE+LG DQP+ L+LLGSERS QALEGV MELED
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLGSERSFQALEGVVMELEDCA 61
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPLL ++ +P F+DA++ALL+GA PR GMER LL +NG+IF EQG+AL VA
Sbjct: 62 FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
++VKV+VVGNP NTNALI KNAP + +NF A+TRLD NRAK QLA K G D++ M
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAAS 333
T+WGNHS+T PD +A ++G P E++ D +W E+ F T+ +RG +I+ G SSAAS
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDGRPALELV-DMEWYEKVFIPTVAQRGAAIIQARGASSAAS 240
Query: 334 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVI 393
A + ++ ++ TPEGDW S V + G YGI E IV+S P +K DG Y +V+ +
Sbjct: 241 AANAAIEHIRDWALGTPEGDWVSMAVPSQGE-YGIPEGIVYSFPVTAK-DGAYRVVEGLE 298
Query: 394 FDDYLRKRI 402
+++ RKR+
Sbjct: 299 INEFARKRM 307
>pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|1IZ9|B Chain B, Crystal Structure Of Malate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|1Y7T|A Chain A, Crystal Structure Of Nad(H)-Depenent Malate Dehydrogenase
Complexed With Nadph
pdb|1Y7T|B Chain B, Crystal Structure Of Nad(H)-Depenent Malate Dehydrogenase
Complexed With Nadph
pdb|2CVQ|A Chain A, Crystal Structure Of Nad(H)-Dependent Malate Dehydrogenase
Complexed With Nadph
pdb|2CVQ|B Chain B, Crystal Structure Of Nad(H)-Dependent Malate Dehydrogenase
Complexed With Nadph
Length = 327
Score = 296 bits (757), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 155/309 (50%), Positives = 212/309 (68%), Gaps = 3/309 (0%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
K V +AV+GAAG I LLF++AAGE+LG DQP+ L+LL ++++ALEGV MELED
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPLL ++ +P F+DA++ALL+GA PR GMER LL +NG+IF EQG+AL VA
Sbjct: 62 FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
++VKV+VVGNP NTNALI KNAP + +NF A+TRLD NRAK QLA K G D++ M
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAAS 333
T+WGNHS+T PD +A ++G P E++ D +W E+ F T+ +RG +I+ G SSAAS
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDGRPALELV-DMEWYEKVFIPTVAQRGAAIIQARGASSAAS 240
Query: 334 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVI 393
A + ++ ++ TPEGDW S V + G YGI E IV+S P +K DG Y +V+ +
Sbjct: 241 AANAAIEHIRDWALGTPEGDWVSMAVPSQGE-YGIPEGIVYSFPVTAK-DGAYRVVEGLE 298
Query: 394 FDDYLRKRI 402
+++ RKR+
Sbjct: 299 INEFARKRM 307
>pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The
1.9 Angstroms Crystal Structure Of Malate Dehydrogenase
From The Thermophilic Bacterium Thermus Flavus
pdb|1BMD|B Chain B, Determinants Of Protein Thermostability Observed In The
1.9 Angstroms Crystal Structure Of Malate Dehydrogenase
From The Thermophilic Bacterium Thermus Flavus
Length = 327
Score = 295 bits (756), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 155/309 (50%), Positives = 212/309 (68%), Gaps = 3/309 (0%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
K V +AV+GAAG I LLF++AAGE+LG DQP+ L+LL ++++ALEGV MELED
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPLL ++ +P F+DA++ALL+GA PR GMER LL +NG+IF EQG+AL VA
Sbjct: 62 FPLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
++VKV+VVGNP NTNALI KNAP + +NF A+TRLD NRAK QLA K G D++ M
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAAS 333
T+WGNHS+T PD +A ++G P E++ D +W E+ F T+ +RG +I+ G SSAAS
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDGRPALELV-DMEWYEKVFIPTVAQRGAAIIQARGASSAAS 240
Query: 334 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVI 393
A + ++ ++ TPEGDW S V + G YGI E IV+S P +K DG Y +V+ +
Sbjct: 241 AANAAIEHIRDWALGTPEGDWVSMAVPSQGE-YGIPEGIVYSFPVTAK-DGAYRVVEGLE 298
Query: 394 FDDYLRKRI 402
+++ RKR+
Sbjct: 299 INEFARKRM 307
>pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site
Mutant (T189i) Of Malate Dehydrogenase From Thermus
Flavus With Increased Enzymatic Activity
pdb|1BDM|B Chain B, The Structure At 1.8 Angstroms Resolution Of A Single Site
Mutant (T189i) Of Malate Dehydrogenase From Thermus
Flavus With Increased Enzymatic Activity
Length = 327
Score = 293 bits (749), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 154/309 (49%), Positives = 211/309 (68%), Gaps = 3/309 (0%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
K V +AV+GAAG I LLF++AAGE+LG DQP+ L+LL ++++ALEGV MELED
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPLL ++ +P F+DA++ALL+GA PR GMER LL +NG+IF EQG+AL VA
Sbjct: 62 FPLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
++VKV+VVGNP NTNALI KNAP + +NF A+TRLD NRAK QLA K G D++ M
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAAS 333
T+WGNHS+ PD +A ++G P E++ D +W E+ F T+ +RG +I+ G SSAAS
Sbjct: 182 TVWGNHSSIMFPDLFHAEVDGRPALELV-DMEWYEKVFIPTVAQRGAAIIQARGASSAAS 240
Query: 334 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVI 393
A + ++ ++ TPEGDW S V + G YGI E IV+S P +K DG Y +V+ +
Sbjct: 241 AANAAIEHIRDWALGTPEGDWVSMAVPSQGE-YGIPEGIVYSFPVTAK-DGAYRVVEGLE 298
Query: 394 FDDYLRKRI 402
+++ RKR+
Sbjct: 299 INEFARKRM 307
>pdb|1B8P|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
pdb|1B8U|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
pdb|1B8V|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
Length = 329
Score = 268 bits (686), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 145/311 (46%), Positives = 209/311 (67%), Gaps = 5/311 (1%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQALEGVAMELED 151
K + +AV+GAAG I LLF++A G++LG DQP+ L+LL +E++ +AL+GV ME++D
Sbjct: 3 KTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDD 62
Query: 152 SLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211
FPLL + +P F+DA+ ALL+GA+PRGPGMER LL+ N QIF QGKA++AV
Sbjct: 63 CAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAV 122
Query: 212 ASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 271
ASRN+KV+VVGNP NTNA I +K+APS+PAKNF A+ RLD NRA Q+A K G +
Sbjct: 123 ASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSSIE 182
Query: 272 NMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSA 331
+ +WGNHS T D+ A+I+G VK++I D W + F T+ KRG +I G SSA
Sbjct: 183 KLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDARGVSSA 242
Query: 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKD 391
AS A + +D + V T G W + G+ ++G+ YGI E ++F P ++ +G+Y++V+
Sbjct: 243 ASAANAAIDHIHDWVLGT-AGKWTTMGIPSDGS-YGIPEGVIFGFPVTTE-NGEYKIVQG 299
Query: 392 VIFDDYLRKRI 402
+ D + ++RI
Sbjct: 300 LSIDAFSQERI 310
>pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Malate
Dehydrogenase At 2.5-Angstroms Resolution
pdb|4MDH|B Chain B, Refined Crystal Structure Of Cytoplasmic Malate
Dehydrogenase At 2.5-Angstroms Resolution
Length = 334
Score = 261 bits (666), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 141/311 (45%), Positives = 200/311 (64%), Gaps = 7/311 (2%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL+ + G V G DQPI L LL + L+GV MEL+D PL
Sbjct: 5 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL 64
Query: 157 LREVKIGINPYEL-FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN 215
L++V I + E+ F+D + A+L+G+ PR GMER LL N +IF QG AL+ A ++
Sbjct: 65 LKDV-IATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKS 123
Query: 216 VKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTI 275
VKVIVVGNP NTN L K+APSIP +NF LTRLD NRAK Q+ALK GV D V N+ I
Sbjct: 124 VKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVII 183
Query: 276 WGNHSTTQVPDFLNARI----NGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSA 331
WGNHS+TQ PD +A++ + V E +KD WL+ F T+Q+RG +IK SSA
Sbjct: 184 WGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSSA 243
Query: 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKD 391
S A +I D ++ + TPEG++ S G+ ++GN YG+ +D+++S P K D +++V+
Sbjct: 244 MSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIK-DKTWKIVEG 302
Query: 392 VIFDDYLRKRI 402
+ +D+ R+++
Sbjct: 303 LPINDFSREKM 313
>pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine
Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And
Tnad At 2.4 Angstroms Resolution
pdb|5MDH|B Chain B, Crystal Structure Of Ternary Complex Of Porcine
Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And
Tnad At 2.4 Angstroms Resolution
Length = 333
Score = 261 bits (666), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 141/311 (45%), Positives = 200/311 (64%), Gaps = 7/311 (2%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL+ + G V G DQPI L LL + L+GV MEL+D PL
Sbjct: 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL 63
Query: 157 LREVKIGINPYEL-FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN 215
L++V I + E+ F+D + A+L+G+ PR GMER LL N +IF QG AL+ A ++
Sbjct: 64 LKDV-IATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKS 122
Query: 216 VKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTI 275
VKVIVVGNP NTN L K+APSIP +NF LTRLD NRAK Q+ALK GV D V N+ I
Sbjct: 123 VKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVII 182
Query: 276 WGNHSTTQVPDFLNARI----NGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSA 331
WGNHS+TQ PD +A++ + V E +KD WL+ F T+Q+RG +IK SSA
Sbjct: 183 WGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSSA 242
Query: 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKD 391
S A +I D ++ + TPEG++ S G+ ++GN YG+ +D+++S P K D +++V+
Sbjct: 243 MSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIK-DKTWKIVEG 301
Query: 392 VIFDDYLRKRI 402
+ +D+ R+++
Sbjct: 302 LPINDFSREKM 312
>pdb|3D5T|A Chain A, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|B Chain B, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|C Chain C, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|D Chain D, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
Length = 331
Score = 253 bits (645), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 141/304 (46%), Positives = 199/304 (65%), Gaps = 3/304 (0%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+AV+GAAG IA LLF++A G++LG DQP+ L+LL ++ A++GV MEL+D FPLL
Sbjct: 12 VAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQAAVKGVVMELDDCAFPLLA 71
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218
V I +P F+DA+ ALL+GA+PR GMER LL N +IF QG ALN VASR+VKV
Sbjct: 72 GVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGAALNEVASRDVKV 131
Query: 219 IVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGN 278
+VVGNP NTNA I +K+AP +P KNF A+ RLD NRA QLA K+G + + +WGN
Sbjct: 132 LVVGNPANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIEKLAVWGN 191
Query: 279 HSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSI 338
HS T PDF A G + ++I D W + F T+ KRG +I+ G SSAAS A +
Sbjct: 192 HSPTMYPDFRFATAEGESLLKLINDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAA 251
Query: 339 VDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYL 398
+D ++ V T G W + G+ ++G+ YGI EDI++ +P + +G+Y+ V+ + D +
Sbjct: 252 IDHVRDWVLGT-NGKWVTMGIPSDGS-YGIPEDIIYGVPVICE-NGEYKRVEGLEIDAFS 308
Query: 399 RKRI 402
R+++
Sbjct: 309 REKM 312
>pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin
pdb|4H7P|B Chain B, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin
pdb|4I1I|A Chain A, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin In Complex
With Nad
pdb|4I1I|B Chain B, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin In Complex
With Nad
Length = 345
Score = 244 bits (623), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 141/321 (43%), Positives = 201/321 (62%), Gaps = 3/321 (0%)
Query: 84 LKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE 143
L+A+ + V +AV+GAAG I L+ +A G +LGP P+ L+LL E +L+AL
Sbjct: 12 LEAQTQGPGSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALA 71
Query: 144 GVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAE 203
GV ELED FPLL +V + +P F+ A++ GA PR GMER LL++N +IF E
Sbjct: 72 GVEAELEDCAFPLLDKVVVTADPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKE 131
Query: 204 QGKALNAVASRNVKVIVVGNPCNTNALICLKNAPS-IPAKNFHALTRLDENRAKCQLALK 262
QG+A+ AVA+ + +V+VVGNP NTNALI LK+A + ++ A+TRLD NRA LA K
Sbjct: 132 QGEAIAAVAASDCRVVVVGNPANTNALILLKSAQGKLNPRHVTAMTRLDHNRALSLLARK 191
Query: 263 AGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLL 322
AGV +V N+ IWGNHS+TQVPD +A I P +E IKD L++ F + ++ RG +
Sbjct: 192 AGVPVSQVRNVIIWGNHSSTQVPDTDSAVIGTTPAREAIKDDA-LDDDFVQVVRGRGAEI 250
Query: 323 IKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKG 382
I+ G SSA S A + VD + + TPEG + S GVY++ NPYG+ ++FS PC
Sbjct: 251 IQLRGLSSAMSAAKAAVDHVHDWIHGTPEGVYVSMGVYSDENPYGVPSGLIFSFPCTCHA 310
Query: 383 DGDYELVKDVIFDDYLRKRIA 403
G++ +V + D ++R+A
Sbjct: 311 -GEWTVVSGKLNGDLGKQRLA 330
>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
pdb|3FI9|B Chain B, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
Length = 343
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 131/295 (44%), Gaps = 29/295 (9%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPD----QPIALKLLGSERSLQALEGVAMELEDSLF 154
+ + GAAGMI +++ + AA L P+ P A+ LEGVA E+ F
Sbjct: 11 LTIVGAAGMIGSNMA-QTAAMMRLTPNLCLYDPFAV----------GLEGVAEEIRHCGF 59
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
L + + E DA++ + G PR GM R LL N +I A+ GK + +
Sbjct: 60 EGLN-LTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPD 118
Query: 215 NVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMT 274
VI++ NP + L+ L + P++ L LD R + +LA G+ V+N
Sbjct: 119 CKHVIIIFNPADITGLVTLIYSGLKPSQ-VTTLAGLDSTRLQSELAKHFGIKQSLVTNTR 177
Query: 275 IWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ---KRGGLLIKKWGRSSA 331
+G H A++NG P+ ++I K E + E Q K G +IK GRSS
Sbjct: 178 TYGGHGEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRGRSSF 237
Query: 332 ASTAVSIVDAMKSLVTPTPEGDWFS--SGVYTNGNPYGIAEDIVFSMPCRSKGDG 384
S + ++ +++ + G+ F +G Y N + E I+ +M DG
Sbjct: 238 QSPSYVSIEMIRAAMG----GEAFRWPAGCYVNVPGF---EHIMMAMETTITKDG 285
>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYG|B Chain B, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYE|A Chain A, Crystal Structure Of The Mj0490 Gene Product, The Family
Of LactateMALATE DEHYDROGENASE, DIMERIC STRUCTURE
Length = 313
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 130/298 (43%), Gaps = 19/298 (6%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIA--LKLLGSERSLQALEGVAMELEDSLF 154
+ + + GA+G + + LA +P L L+G E S+ LEG+ ++ D+L
Sbjct: 1 MKVTIIGASGRVGSATALLLAK-------EPFMKDLVLIGREHSINKLEGLREDIYDALA 53
Query: 155 PLLREVKIGINPYE---LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211
+ I + E + ++++ ++ PR GM R L N +I + K + +
Sbjct: 54 GTRSDANIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEI 113
Query: 212 ASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 271
+ K+ V+ NP + L ++ + F T LD R K +A GV D+V
Sbjct: 114 C--DTKIFVITNPVDVMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVR 171
Query: 272 NMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSA 331
I G H + VP I G+P+++ + + + E ++ +G +I+ G S
Sbjct: 172 T-RIIGEHGDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLKG-GSE 229
Query: 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELV 389
A +I++ ++ +V E + Y +G GI D+ +P + DG E+V
Sbjct: 230 FGPAAAILNVVRCIV--NNEKRLLTLSAYVDGEFDGI-RDVCIGVPVKIGRDGIEEVV 284
>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh)
Length = 319
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 108/236 (45%), Gaps = 17/236 (7%)
Query: 122 LGPDQPIALKLLGSERSL-------QALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174
+G AL + G R + + EG A++L P R I Y + ++
Sbjct: 11 VGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGT-PFTRRANIYAGDYADLKGSD 69
Query: 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLK 234
++ P+ PG R LL N ++ E + ++ A ++ VIVV NP + LK
Sbjct: 70 VVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSI-VIVVTNPVDVLTYFFLK 128
Query: 235 NAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARING 294
+ P K F + T LD R + +A G F + ++ + G H ++VP + A I G
Sbjct: 129 ESGMDPRKVFGSGTVLDTARLRTLIAQHCG-FSPRSVHVYVIGEHGDSEVPVWSGAMIGG 187
Query: 295 LPVKEIIK-----DHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSL 345
+P++ + + D K LE F E ++ +I++ G + A A+++ D ++S+
Sbjct: 188 IPLQNMCQVCQKCDSKILEN-FAEKTKRAAYEIIERKGATHYA-IALAVADIVESI 241
>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|B Chain B, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|C Chain C, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|D Chain D, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|E Chain E, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|F Chain F, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|G Chain G, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|H Chain H, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|I Chain I, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|J Chain J, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|K Chain K, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|L Chain L, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
Length = 328
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 12/210 (5%)
Query: 131 KLLGSERSLQALEGV----AMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAKPRG 185
K LG +EGV A++L + + KI G N YE ++++ ++ PR
Sbjct: 36 KDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNYEYLQNSDVVIITAGVPRK 95
Query: 186 PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFH 245
P M R+ LL +N +I + + N VI + NP + + K IPA
Sbjct: 96 PNMTRSDLLTVNAKIVGSVAENVGKYCP-NAFVICITNPLDA-MVYYFKEKSGIPANKVC 153
Query: 246 ALTR-LDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH 304
++ LD R +C L+ GV VS + + G H +P + I G+ + + ++
Sbjct: 154 GMSGVLDSARFRCNLSRALGVKPSDVSAIVV-GGHGDEMIPLTSSVTIGGILLSDFVEQG 212
Query: 305 KWLEEGFTETIQKR---GGLLIKKWGRSSA 331
K E I+K GG +++ SA
Sbjct: 213 KITHSQINEIIKKTAFGGGEIVELLKTGSA 242
>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV0|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 98/208 (47%), Gaps = 10/208 (4%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIF 201
+G A+++ +S L + K+ G N Y +++ ++ PR PGM R LL +N I
Sbjct: 39 QGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVVITAGLPRKPGMTREDLLSMNAGIV 98
Query: 202 AE-QGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTR-LDENRAKCQL 259
E G+ + S+N ++VV NP + + + + +P + + LD R + +
Sbjct: 99 REVTGRIME--HSKNPIIVVVSNPLDIMTHVAWQKS-GLPKERVIGMAGVLDSARFRSFI 155
Query: 260 ALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRG 319
A++ GV V+ + G H VP + G+PV ++I + E E + G
Sbjct: 156 AMELGVSMQDVT-ACVLGGHGDAMVPVVKYTTVAGIPVADLISAERIAE--LVERTRTGG 212
Query: 320 GLLIKKWGRSSA-ASTAVSIVDAMKSLV 346
++ + SA S A S+V+ ++S+V
Sbjct: 213 AEIVNHLKQGSAFYSPATSVVEMVESIV 240
>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|B Chain B, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|C Chain C, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|D Chain D, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
Length = 308
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 114/261 (43%), Gaps = 13/261 (4%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIF 201
+G A++L + L +++I G N YE ++ L+ R PGM R LL+ N
Sbjct: 37 QGEALDLAHAAAELGVDIRISGSNSYEDMRGSDIVLVTAGIGRKPGMTREQLLEANANTM 96
Query: 202 AEQGKALNAVASRNVKVIVVGNPCNTNALICLKNA--PSIPAKNFHALTRLDENRAKCQL 259
A+ + + A A ++ V++ NP + + K P F + LD R +
Sbjct: 97 ADLAEKIKAYA-KDAIVVITTNPVDAMTYVMYKKTGFPRERVIGFSGI--LDSARMAYYI 153
Query: 260 ALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRG 319
+ K GV + V N + G H P + + G+P++ ++ + +EE +ET+ G
Sbjct: 154 SQKLGVSFKSV-NAIVLGMHGQKMFPVPRLSSVGGVPLEHLMSKEE-IEEVVSETVNA-G 210
Query: 320 GLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCR 379
+ + G SS A +V ++++ + + +Y G YG DIV +P
Sbjct: 211 AKITELRGYSSNYGPAAGLVLTVEAIKRDSKR--IYPYSLYLQGE-YGY-NDIVAEVPAV 266
Query: 380 SKGDGDYELVKDVIFDDYLRK 400
G +++ + +D RK
Sbjct: 267 IGKSGIERIIELPLTEDEKRK 287
>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From
Salinibacter Ruber
Length = 314
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 95/229 (41%), Gaps = 10/229 (4%)
Query: 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222
G N Y ED++ ++ PR PGM R LL N +I + S + +IVV
Sbjct: 60 GTNDYGPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQF-VEGSPDSTIIVVA 118
Query: 223 NPCNTNALICLKNAPSIPAKNFHALTR-LDENRAKCQLALKAGVFYDKVSNMTIWGNHST 281
NP + + + A P + LD R + +A + V V + + G H
Sbjct: 119 NPLDVMTYVAYE-ASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQAL-LMGGHGD 176
Query: 282 TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDA 341
T VP + G+PV ++I D + E E + GG ++ G S+ + + +
Sbjct: 177 TMVPLPRYTTVGGIPVPQLIDDARIEE--IVERTKGAGGEIVDLMGTSAWYAPGAAAAEM 234
Query: 342 MKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVK 390
++++ Y +G YG+ +D+ +P + G E+++
Sbjct: 235 TEAILKDNKR--ILPCAAYCDGE-YGL-DDLFIGVPVKLGAGGVEEVIE 279
>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUY|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1UXG|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface.
pdb|1UXG|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
Length = 309
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 9/201 (4%)
Query: 128 IALKLLGSERSLQALEGV----AMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAK 182
+A K LG L +EGV A++L ++ +V++ G N Y +++ ++
Sbjct: 21 LAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGA 80
Query: 183 PRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAK 242
PR PGM R L+ +N I + A S N +I+V NP + + + + +
Sbjct: 81 PRKPGMSREDLIKVNADI-TRACISQAAPLSPNAVIIMVNNPLDAMTYLAAEVSGFPKER 139
Query: 243 NFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIK 302
LD R + +A++AGV + V M + G H VP + I+G+PV E I
Sbjct: 140 VIGQAGVLDAARYRTFIAMEAGVSVEDVQAM-LMGGHGDEMVPLPRFSTISGIPVSEFIA 198
Query: 303 DHKWLEEGFTETIQKRGGLLI 323
+ + E +K GG ++
Sbjct: 199 PDRLAQ--IVERTRKGGGEIV 217
>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXH|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXK|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXK|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 90/201 (44%), Gaps = 9/201 (4%)
Query: 128 IALKLLGSERSLQALEGV----AMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAK 182
+A K LG L +EGV A++L ++ +V++ G N Y +++ ++
Sbjct: 21 LAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGA 80
Query: 183 PRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAK 242
PR PGM R L+ +N I + A S N +I+V NP + + + + +
Sbjct: 81 PRKPGMSREDLIKVNADI-TRACISQAAPLSPNAVIIMVNNPLDAMTYLAAEVSGFPKER 139
Query: 243 NFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIK 302
LD R + +A++AGV V M + G H VP + I+G+PV E I
Sbjct: 140 VIGQAGVLDAARYRTFIAMEAGVSVQDVQAM-LMGGHGDEMVPLPRFSTISGIPVSEFIA 198
Query: 303 DHKWLEEGFTETIQKRGGLLI 323
+ + E +K GG ++
Sbjct: 199 PDRLAQ--IVERTRKGGGEIV 217
>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
pdb|1UR5|C Chain C, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
Length = 309
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 9/201 (4%)
Query: 128 IALKLLGSERSLQALEGV----AMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAK 182
+A K LG L +EGV A++L ++ +V++ G N Y +++ ++
Sbjct: 21 LAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGA 80
Query: 183 PRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAK 242
PR PGM R L+ +N I + A S N +I+V NP + + + + +
Sbjct: 81 PRKPGMSREDLIKVNADI-TRACISQAAPLSPNAVIIMVNNPLDAMTYLAAEVSGFPKER 139
Query: 243 NFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIK 302
LD R + +A++AGV + V M + G H VP + I+G+PV E I
Sbjct: 140 VIGQAGVLDAARYRTFIAMEAGVSVEDVQAM-LMGGHGDEMVPLPRFSCISGIPVSEFIA 198
Query: 303 DHKWLEEGFTETIQKRGGLLI 323
+ + E +K GG ++
Sbjct: 199 PDRLAQ--IVERTRKGGGEIV 217
>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXI|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXJ|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXJ|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 90/201 (44%), Gaps = 9/201 (4%)
Query: 128 IALKLLGSERSLQALEGV----AMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAK 182
+A K LG L +EGV A++L ++ +V++ G N Y +++ ++
Sbjct: 21 LAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGA 80
Query: 183 PRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAK 242
PR PGM R L+ +N I + A S N +I+V NP + + + + +
Sbjct: 81 PRKPGMSREDLIKVNADI-TRACISQAAPLSPNAVIIMVNNPLDAMTYLAAEVSGFPKER 139
Query: 243 NFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIK 302
LD R + +A++AGV V M + G H VP + I+G+PV E I
Sbjct: 140 VIGQAGVLDAARYRTFIAMEAGVSVKDVQAM-LMGGHGDEMVPLPRFSTISGIPVSEFIA 198
Query: 303 DHKWLEEGFTETIQKRGGLLI 323
+ + E +K GG ++
Sbjct: 199 PDRLAQ--IVERTRKGGGEIV 217
>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVI|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|E Chain E, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|F Chain F, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
Length = 324
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 5/157 (3%)
Query: 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222
G N Y E A+ ++ PR PGM R LL IN ++ + G + A VI +
Sbjct: 66 GANDYAAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAF-VICIT 124
Query: 223 NPCNTNALICLKNAPSIPAKNFHALTR-LDENRAKCQLALKAGVFYDKVSNMTIWGNHST 281
NP + + L+ +PA + LD R + L+ + V + V+ + + G H
Sbjct: 125 NPLDA-MVWALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVT-VFVLGGHGD 182
Query: 282 TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKR 318
+ VP + + G+P+ +++K W + + I +R
Sbjct: 183 SMVPLARYSTVAGIPLPDLVK-MGWTSQDKLDKIIQR 218
>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum
Cth-1135
Length = 318
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 109/252 (43%), Gaps = 13/252 (5%)
Query: 144 GVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAE 203
G AM++ L P + ++ + Y +D + ++ R PG R L N I E
Sbjct: 47 GEAMDINHGL-PFMGQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKE 105
Query: 204 QGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKA 263
+ + + V ++VV NP + + K + K + T LD R + L+ K
Sbjct: 106 VTQNIMKYYNHGV-ILVVSNPVDIITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKL 164
Query: 264 GVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK--WLEEG---FTETIQKR 318
GV V I G H +Q+P + I G + E I D K + EE E ++
Sbjct: 165 GVDVKNVHGYII-GEHGDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTA 223
Query: 319 GGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPC 378
G +IK G ++ AVSI +++L+ + + G NG YGI ED+ S+P
Sbjct: 224 GATIIKNKG-ATYYGIAVSINTIVETLL--KNQNTIRTVGTVING-MYGI-EDVAISLPS 278
Query: 379 RSKGDGDYELVK 390
+G E+++
Sbjct: 279 IVNSEGVQEVLQ 290
>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 82/186 (44%), Gaps = 7/186 (3%)
Query: 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222
G N Y D++ ++ PR PGM R LL N I E + S+N +IVV
Sbjct: 60 GSNDYADTADSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMK-HSKNPIIIVVS 118
Query: 223 NPCNTNALICLKNAPSIPAKNFHALTR-LDENRAKCQLALKAGVFYDKVSNMTIWGNHST 281
NP + + + +P + + LD R + +A++ GV + N + G H
Sbjct: 119 NPLDIMTHVAWVRS-GLPKERVIGMAGVLDAARFRSFIAMELGVSMQDI-NACVLGGHGD 176
Query: 282 TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSA-ASTAVSIVD 340
VP + G+P+ +++ + E + G +++ + SA + A S+V+
Sbjct: 177 AMVPVVKYTTVAGIPISDLLPAETI--DKLVERTRNGGAEIVEHLKQGSAFYAPASSVVE 234
Query: 341 AMKSLV 346
++S+V
Sbjct: 235 MVESIV 240
>pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form
pdb|1SOV|B Chain B, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form
pdb|1SOW|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxalate
pdb|1SOW|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxalate
Length = 328
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 96/236 (40%), Gaps = 17/236 (7%)
Query: 165 NPYELFEDAEWALLIGAKPRGPGME-----RAGLLDINGQIFAEQGKALNAVASRNVKVI 219
N YE ++ ++ + PG R LL N +I E + + VI
Sbjct: 69 NQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAF-VI 127
Query: 220 VVGNPCNTNALICLKNAPSIPAKNFHALTR-LDENRAKCQLALKAGVFYDKVSNMTIWGN 278
VV NP + + C A +P + LD R + +A + + + T+ G
Sbjct: 128 VVTNPLDC-MVKCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDI-QATVIGT 185
Query: 279 HSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ---KRGGLLIKKWGRSSA-AST 334
H +P +NG P++E IK K E E ++ K GG +++ G+ SA +
Sbjct: 186 HGDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRLLGQGSAYYAP 245
Query: 335 AVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVK 390
A+S + ++ + E VY G YG+ D+ +P G G ++++
Sbjct: 246 ALSAITMAQAFL--KDEKRVLPCSVYCQGE-YGL-HDMFIGLPAVIGGGGIEQVIE 297
>pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxq
pdb|3CZM|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxq
Length = 326
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 95/239 (39%), Gaps = 23/239 (9%)
Query: 165 NPYELFEDAEWALLIGAKPRGPGME-----RAGLLDINGQIFAEQGKALNAVASRNVKVI 219
N YE ++ ++ + PG R LL N +I E + + VI
Sbjct: 69 NQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAF-VI 127
Query: 220 VVGNPCNTNALICLKNAPSIPAKNFHALTR-LDENRAKCQLALKAGVFYDKVSNMTIWGN 278
VV NP + + C A +P + LD R + +A + + + T+ G
Sbjct: 128 VVTNPLDC-MVKCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDI-QATVIGT 185
Query: 279 HSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ---KRGGLLIKKWGRSSA---- 331
H +P +NG P++E IK K E E ++ K GG +++ G+ SA
Sbjct: 186 HGDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRLLGQGSAYYAP 245
Query: 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVK 390
A +A+++ A E VY G YG+ D+ +P G G ++++
Sbjct: 246 ALSAITMAQAFLK-----DEKRVLPCSVYCQGE-YGL-HDMFIGLPAVIGGGGIEQVIE 297
>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 94/207 (45%), Gaps = 8/207 (3%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIF 201
+G A+++ +S L + K+ G N Y +++ ++ PR PGM R LL N I
Sbjct: 39 QGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIV 98
Query: 202 AEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTR-LDENRAKCQLA 260
E + S+N +IVV NP + + + +P + + LD R + +A
Sbjct: 99 KEVTDNIMK-HSKNPIIIVVSNPLDIMTHVAWVRS-GLPKERVIGMAGVLDAARFRSFIA 156
Query: 261 LKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGG 320
++ GV + N + G H VP + G+P+ +++ + E + G
Sbjct: 157 MELGVSMQDI-NACVLGGHGDAMVPVVKYTTVAGIPISDLLPAETI--DKLVERTRNGGA 213
Query: 321 LLIKKWGRSSA-ASTAVSIVDAMKSLV 346
+++ + SA + A S+V+ ++S+V
Sbjct: 214 EIVEHLKQGSAFYAPASSVVEMVESIV 240
>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|B Chain B, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|C Chain C, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|D Chain D, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
Length = 321
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 90/229 (39%), Gaps = 14/229 (6%)
Query: 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222
G N Y+ E+++ ++ PR PG R LL IN ++ G+ + N VI +
Sbjct: 64 GTNDYKDLENSDVVIVTAGVPRKPGXSRDDLLGINIKVXQTVGEGIKH-NCPNAFVICIT 122
Query: 223 NPCN--TNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHS 280
NP + N L P K LD R + LA + V +V + G H
Sbjct: 123 NPLDIXVNXLQKFSGVPD--NKIVGXAGVLDSARFRTFLADELNVSVQQVQ-AYVXGGHG 179
Query: 281 TTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKR---GGLLIK--KWGRSSAASTA 335
T VP + + G+ +++++K+ K +E + + GG ++ K G + A A
Sbjct: 180 DTXVPLTKXSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALLKTGSAYYAPAA 239
Query: 336 VSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDG 384
I A L + YG+ ED+ +P +G
Sbjct: 240 AGIQXAESFL---KDKKXILPCAAKVKAGXYGLDEDLFVGVPTEISANG 285
>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|B Chain B, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|C Chain C, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|D Chain D, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
Length = 313
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 81/184 (44%), Gaps = 12/184 (6%)
Query: 144 GVAMELEDSLFPLLREVK--IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIF 201
GVA +L S P +K G +P E A+ L+ R PG +RA L ++N I
Sbjct: 44 GVAADL--SHIPTHVSIKGYAGEDPTPALEGADVVLISAGVARKPGXDRADLFNVNAGIV 101
Query: 202 AEQGKALNAVASRNVKVIVVGNPCNTNALIC---LKNAPSIPAKNFHALTRLDENRAKCQ 258
+ + AV N + ++ NP NT I LK A + +T LD R++
Sbjct: 102 KSLAERI-AVVCPNACIGIITNPVNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETF 160
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPV--KEIIKDHKWLEEGFTETIQ 316
+A G +V I G+ T +P L +++ G+ +EI K ++ TE ++
Sbjct: 161 VAELKGQDPGEVRVPVIGGHSGVTILP--LLSQVEGVEFSDEEIAALTKRIQNAGTEVVE 218
Query: 317 KRGG 320
+ G
Sbjct: 219 AKAG 222
>pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|B Chain B, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|C Chain C, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|D Chain D, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
Length = 331
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 87/218 (39%), Gaps = 25/218 (11%)
Query: 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI 231
D+EW+ R LL N +I E G+ + + +IVV NP + +
Sbjct: 96 DSEWS-------------RNDLLPFNSKIIREIGQNIKKYCPKTF-IIVVTNPLDCMVKV 141
Query: 232 CLKNAPSIPAKNFHALT-RLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNA 290
+ A +P + LD R + +A V V T+ G H VP
Sbjct: 142 -MXEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDV-QATVIGTHGDCMVPLVRYI 199
Query: 291 RINGLPVKEIIKD----HKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLV 346
+NG P+++ IKD K LEE E + GG +++ G+ SA + AM +
Sbjct: 200 TVNGYPIQKFIKDGVVTEKQLEE-IAEHTKVSGGEIVRFLGQGSAYYAPAASAVAMATSF 258
Query: 347 TPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDG 384
E VY NG YG+ +D+ +P G G
Sbjct: 259 L-NDEKRVIPCSVYCNGE-YGL-KDMFIGLPAVIGGAG 293
>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|B Chain B, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|C Chain C, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|D Chain D, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|E Chain E, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|F Chain F, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
Length = 326
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 3/167 (1%)
Query: 143 EGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFA 202
+G A++LED+L P KI Y +DA+ ++ P+ PG R L++ N +I
Sbjct: 48 KGDAIDLEDAL-PFTSPKKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILK 106
Query: 203 EQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALK 262
+ + N +V NP + K + + + T LD R + +A
Sbjct: 107 SIVDPI-VDSGFNGIFLVAANPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAKM 165
Query: 263 AGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEE 309
V V + I G H T+ P + +A I G+ + E +K H ++E
Sbjct: 166 VNVDARSV-HAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIKE 211
>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|B Chain B, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|C Chain C, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|D Chain D, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|E Chain E, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|F Chain F, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|G Chain G, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|H Chain H, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
Length = 331
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 129/328 (39%), Gaps = 47/328 (14%)
Query: 80 LTYDLKAEEETKSWKKMVNIAVSGAAGM-IANHLLFKLAAGEVLGPDQPIALKLLGSERS 138
L Y+L EE+T K + + GA GM A +L K A E+ D I KL G
Sbjct: 7 LIYNLLKEEQTPQNK--ITVVGVGAVGMACAISILMKDLADELALVD-VIEDKLKGEMMD 63
Query: 139 LQALEGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 197
LQ SLF LR KI Y + +++ ++ + G R L+ N
Sbjct: 64 LQ---------HGSLF--LRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRN 112
Query: 198 GQIFAEQGKALNAVA-SRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAK 256
IF + N V S N K+++V NP + + K + + + LD R +
Sbjct: 113 VNIF--KFIIPNVVKYSPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFR 170
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD------------- 303
+ + GV + + + G H + VP + + G+ +K + D
Sbjct: 171 YLMGERLGV-HPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEV 229
Query: 304 HKWLEEGFTETIQKRGGLLIKKWGRS-SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTN 362
HK + E E I+ +G W S A A SI MK+L P
Sbjct: 230 HKQVVESAYEVIKLKG---YTSWAIGLSVADLAESI---MKNLRRVHPVSTMIKG----- 278
Query: 363 GNPYGIAEDIVFSMPCRSKGDGDYELVK 390
YGI +D+ S+PC +G +LVK
Sbjct: 279 --LYGIKDDVFLSVPCILGQNGISDLVK 304
>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|B Chain B, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|C Chain C, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|D Chain D, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
Length = 337
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 129/328 (39%), Gaps = 47/328 (14%)
Query: 80 LTYDLKAEEETKSWKKMVNIAVSGAAGM-IANHLLFKLAAGEVLGPDQPIALKLLGSERS 138
L Y+L EE+T K + + GA GM A +L K A E+ D I KL G
Sbjct: 7 LIYNLLKEEQTPQNK--ITVVGVGAVGMACAISILMKDLADELALVD-VIEDKLKGEMMD 63
Query: 139 LQALEGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 197
LQ SLF LR KI Y + +++ ++ + G R L+ N
Sbjct: 64 LQ---------HGSLF--LRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRN 112
Query: 198 GQIFAEQGKALNAVA-SRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAK 256
IF + N V S N K+++V NP + + K + + + LD R +
Sbjct: 113 VNIF--KFIIPNVVKYSPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFR 170
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD------------- 303
+ + GV + + + G H + VP + + G+ +K + D
Sbjct: 171 YLMGERLGV-HPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEV 229
Query: 304 HKWLEEGFTETIQKRGGLLIKKWGRS-SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTN 362
HK + E E I+ +G W S A A SI MK+L P
Sbjct: 230 HKQVVESAYEVIKLKG---YTSWAIGLSVADLAESI---MKNLRRVHPVSTMIKG----- 278
Query: 363 GNPYGIAEDIVFSMPCRSKGDGDYELVK 390
YGI +D+ S+PC +G +LVK
Sbjct: 279 --LYGIKDDVFLSVPCILGQNGISDLVK 304
>pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form
pdb|1PZF|A Chain A, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|B Chain B, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|C Chain C, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|D Chain D, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZH|A Chain A, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|B Chain B, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|C Chain C, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|D Chain D, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
Length = 331
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 87/218 (39%), Gaps = 25/218 (11%)
Query: 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI 231
D+EW+ R LL N +I E G+ + + +IVV NP + +
Sbjct: 96 DSEWS-------------RNDLLPFNSKIIREIGQNIKKYCPKTF-IIVVTNPLDCMVKV 141
Query: 232 CLKNAPSIPAKNFHALT-RLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNA 290
+ A +P + LD R + +A V V T+ G H VP
Sbjct: 142 -MCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDV-QATVIGTHGDCMVPLVRYI 199
Query: 291 RINGLPVKEIIKD----HKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLV 346
+NG P+++ IKD K LEE E + GG +++ G+ SA + AM +
Sbjct: 200 TVNGYPIQKFIKDGVVTEKQLEE-IAEHTKVSGGEIVRFLGQGSAYYAPAASAVAMATSF 258
Query: 347 TPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDG 384
E VY NG YG+ +D+ +P G G
Sbjct: 259 L-NDEKRVIPCSVYCNGE-YGL-KDMFIGLPAVIGGAG 293
>pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|C Chain C, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|D Chain D, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
Length = 329
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 87/218 (39%), Gaps = 25/218 (11%)
Query: 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI 231
D+EW+ R LL N +I E G+ + + +IVV NP + +
Sbjct: 94 DSEWS-------------RNDLLPFNSKIIREIGQNIKKYCPKTF-IIVVTNPLDCMVKV 139
Query: 232 CLKNAPSIPAKNFHALT-RLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNA 290
+ A +P + LD R + +A V V T+ G H VP
Sbjct: 140 -MCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDV-QATVIGTHGDCMVPLVRYI 197
Query: 291 RINGLPVKEIIKD----HKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLV 346
+NG P+++ IKD K LEE E + GG +++ G+ SA + AM +
Sbjct: 198 TVNGYPIQKFIKDGVVTEKQLEE-IAEHTKVSGGEIVRFLGQGSAYYAPAASAVAMATSF 256
Query: 347 TPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDG 384
E VY NG YG+ +D+ +P G G
Sbjct: 257 L-NDEKRVIPCSVYCNGE-YGL-KDMFIGLPAVIGGAG 291
>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|C Chain C, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|D Chain D, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
Length = 304
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 4/148 (2%)
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
P+ ++ + DA+ +L + PG R LL+ N IF E + A
Sbjct: 50 PVSHGTRVWHGGHSELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPD 109
Query: 215 NVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMT 274
V ++V NP + + + AP P + T LD R + +A AGV
Sbjct: 110 AV-LLVTSNPVDLLTDLATQLAPGQPV--IGSGTVLDSARFRHLMAQHAGVDGTHAHGY- 165
Query: 275 IWGNHSTTQVPDFLNARINGLPVKEIIK 302
+ G H ++V + +A + G+PV + ++
Sbjct: 166 VLGEHGDSEVLAWSSAMVAGMPVADFMQ 193
>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|B Chain B, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|C Chain C, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|D Chain D, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|E Chain E, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|F Chain F, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|G Chain G, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|H Chain H, Structure Of Tt0471 Protein From Thermus Thermophilus
Length = 310
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 2/146 (1%)
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
P V + Y E A +L + PG R LLD N Q+FA+ + A
Sbjct: 50 PFAHPVWVRAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPE 109
Query: 215 NVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMT 274
V ++V NP + + + + P + + T LD R + LA V V +
Sbjct: 110 AV-LLVATNPVDVXTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSV-HAY 167
Query: 275 IWGNHSTTQVPDFLNARINGLPVKEI 300
+ G H ++V + +A++ G+P+ E
Sbjct: 168 VLGEHGDSEVLVWSSAQVGGVPLLEF 193
>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate
Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms
Resolution
Length = 325
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 3/167 (1%)
Query: 143 EGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFA 202
+G A++L ++L P KI Y +DA+ ++ P+ PG R L++ N +I
Sbjct: 47 KGDAIDLSNAL-PFTSPKKIYSAEYSDAKDADLVVITAGAPKQPGETRLDLVNKNLKILK 105
Query: 203 EQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALK 262
+ + N+ +V NP + K + + + T LD R + +A
Sbjct: 106 SIVDPI-VDSGFNLIFLVAANPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEM 164
Query: 263 AGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEE 309
V V + I G H T+ P + +A I G+ + E +K H ++E
Sbjct: 165 VNVDARSV-HAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIKE 210
>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|B Chain B, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|C Chain C, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|D Chain D, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
Length = 310
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 4/152 (2%)
Query: 150 EDSLF--PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKA 207
ED L P V + Y E A +L + PG R LLD N Q+FA+
Sbjct: 43 EDILHATPFAHPVWVRAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPR 102
Query: 208 LNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFY 267
+ A V ++V NP + + + + P + + T LD R + LA V
Sbjct: 103 VLEAAPEAV-LLVATNPVDVMTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAP 161
Query: 268 DKVSNMTIWGNHSTTQVPDFLNARINGLPVKE 299
V + + G H ++V + +A++ G+P+ E
Sbjct: 162 QSV-HAYVLGEHGDSEVLVWSSAQVGGVPLLE 192
>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V7P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
Length = 310
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 4/153 (2%)
Query: 150 EDSLF--PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKA 207
ED L P V + Y E A +L + PG R LLD N Q+FA+
Sbjct: 43 EDILHATPFAHPVWVRAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPR 102
Query: 208 LNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFY 267
+ A V ++V NP + + + + P + + T LD R + LA V
Sbjct: 103 VLEAAPEAV-LLVATNPVDVMTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAP 161
Query: 268 DKVSNMTIWGNHSTTQVPDFLNARINGLPVKEI 300
V + + G H ++V + +A++ G+P+ E
Sbjct: 162 QSV-HAYVLGEHGDSEVLVWSSAQVGGVPLLEF 193
>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|E Chain E, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|F Chain F, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|G Chain G, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|H Chain H, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
Length = 326
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/288 (22%), Positives = 119/288 (41%), Gaps = 18/288 (6%)
Query: 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
K VN AG + + F L +Q I +L+ + + + G M+L
Sbjct: 3 KHVNKVALIGAGFVGSSYAFALI-------NQGITDELVVIDVNKEKAMGDVMDLNHGKA 55
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
+ VK YE +DA+ + + PG R L++ N +IF +G +AS
Sbjct: 56 FAPQPVKTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIF--KGIVSEVMASG 113
Query: 215 NVKVIVVG-NPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
+ +V NP + K + + + T LD R + L+ G V +
Sbjct: 114 FDGIFLVATNPVDILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNV-HA 172
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEII-KDHKWLEEGFTETIQ--KRGGLLIKKWGRSS 330
I G H T++P + +A + G+PV E++ K+ + +E + + K I + ++
Sbjct: 173 HIIGEHGDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKKGAT 232
Query: 331 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPC 378
A+S+ K+++ E + Y +G YG A+D+ +P
Sbjct: 233 YYGVAMSLARITKAIL--HNENSILTVSTYLDGQ-YG-ADDVYIGVPA 276
>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQF|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
Length = 326
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/288 (22%), Positives = 118/288 (40%), Gaps = 18/288 (6%)
Query: 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
K VN AG + + F L +Q I +L+ + + + G M+L
Sbjct: 3 KHVNKVALIGAGFVGSSYAFALI-------NQGITDELVVIDVNKEKAMGDVMDLNHGKA 55
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
+ VK YE +DA+ + + PG R L++ N +IF +G +AS
Sbjct: 56 FAPQPVKTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIF--KGIVSEVMASG 113
Query: 215 NVKVIVVG-NPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
+ +V NP + K + + + T LD R + L+ G V
Sbjct: 114 FDGIFLVATNPVDILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAH 173
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEII-KDHKWLEEGFTETIQ--KRGGLLIKKWGRSS 330
I G H T++P + +A + G+PV E++ K+ + +E + + K I + ++
Sbjct: 174 II-GEHGDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKKGAT 232
Query: 331 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPC 378
A+S+ K+++ E + Y +G YG A+D+ +P
Sbjct: 233 YYGVAMSLARITKAIL--HNENSILTVSTYLDGQ-YG-ADDVYIGVPA 276
>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|C Chain C, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|E Chain E, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|G Chain G, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|3HHP|A Chain A, Malate Dehydrogenase Open Conformation
pdb|3HHP|B Chain B, Malate Dehydrogenase Open Conformation
pdb|3HHP|C Chain C, Malate Dehydrogenase Open Conformation
pdb|3HHP|D Chain D, Malate Dehydrogenase Open Conformation
Length = 312
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 111/260 (42%), Gaps = 30/260 (11%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE----GVAMELEDS 152
+ +AV GAAG I L +L P GSE SL + GVA++L S
Sbjct: 1 MKVAVLGAAGGIGQALAL------LLKTQLPS-----GSELSLYDIAPVTPGVAVDL--S 47
Query: 153 LFPLLREVK--IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNA 210
P ++K G + E A+ L+ R PGM+R+ L ++N I + +
Sbjct: 48 HIPTAVKIKGFSGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAK 107
Query: 211 VASRNVKVIVVGNPCNTNALIC---LKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFY 267
+ + ++ NP NT I LK A +T LD R+ +A G
Sbjct: 108 TCPKAC-IGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQP 166
Query: 268 DKVSNMTIWGNHSTTQVPDFLNARINGLPV--KEIIKDHKWLEEGFTETIQKR--GGLLI 323
+V I G+ T +P L +++ G+ +E+ K ++ TE ++ + GG
Sbjct: 167 GEVEVPVIGGHSGVTILP--LLSQVPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSAT 224
Query: 324 KKWGRSSAASTAVSIVDAMK 343
G+ +AA +S+V A++
Sbjct: 225 LSMGQ-AAARFGLSLVRALQ 243
>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXB|B Chain B, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXJ|A Chain A, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|B Chain B, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|C Chain C, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|D Chain D, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|3ZZN|A Chain A, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|B Chain B, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|C Chain C, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|D Chain D, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
Length = 310
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 65/155 (41%), Gaps = 8/155 (5%)
Query: 150 EDSLF--PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKA 207
ED L P V + Y E A +L + PG R LLD N Q+FA+
Sbjct: 43 EDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPR 102
Query: 208 LNAVASRNVKVIVVGNPCN--TNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGV 265
+ A V ++V NP + T L P P + + T LD R + LA V
Sbjct: 103 VLEAAPEAV-LLVATNPVDVMTQVAYALSGLP--PGRVVGSGTILDTARFRALLAEYLRV 159
Query: 266 FYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEI 300
V + + G H ++V + +A++ G+P+ E
Sbjct: 160 APQSV-HAYVLGEHGDSEVLVWSSAQVGGVPLLEF 193
>pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial
L-Lactate Dehydrogenase
pdb|1LLD|B Chain B, Molecular Basis Of Allosteric Activation Of Bacterial
L-Lactate Dehydrogenase
pdb|1LTH|T Chain T, T And R States In The Crystals Of Bacterial L-Lactate
Dehydrogenase Reveal The Mechanism For Allosteric
Control
pdb|1LTH|R Chain R, T And R States In The Crystals Of Bacterial L-Lactate
Dehydrogenase Reveal The Mechanism For Allosteric
Control
Length = 319
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 91/206 (44%), Gaps = 12/206 (5%)
Query: 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
K +AV GA G + + L F A G + I L+ + ER ++A E + M+ S +
Sbjct: 6 KPTKLAVIGA-GAVGSTLAFAAAQ---RGIAREIVLEDIAKER-VEA-EVLDMQHGSSFY 59
Query: 155 PLLREVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
P V I G + E+ DA+ ++ + PG R L+ I L VA
Sbjct: 60 P---TVSIDGSDDPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAP 116
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
N +++ NP + + K + F + T LD R + +A + GV V +
Sbjct: 117 -NAIYMLITNPVDIATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNV-HA 174
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKE 299
I G H ++VP + +A I G+P+ +
Sbjct: 175 YIAGEHGDSEVPLWESATIGGVPMSD 200
>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli
Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms
Resolution
pdb|2CMD|A Chain A, The Crystal Structure Of E.Coli Malate Dehydrogenase: A
Complex Of The Apoenzyme And Citrate At 1.87 Angstroms
Resolution
Length = 312
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 111/260 (42%), Gaps = 30/260 (11%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE----GVAMELEDS 152
+ +AV GAAG I L +L P GSE SL + GVA++L S
Sbjct: 1 MKVAVLGAAGGIGQALAL------LLKTQLPS-----GSELSLYDIAPVTPGVAVDL--S 47
Query: 153 LFPLLREVK--IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNA 210
P ++K G + E A+ L+ R PGM+R+ L ++N I + +
Sbjct: 48 HIPTAVKIKGFSGEDATPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAK 107
Query: 211 VASRNVKVIVVGNPCNTNALIC---LKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFY 267
+ + ++ NP NT I LK A +T LD R+ +A G
Sbjct: 108 TCPKAC-IGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQP 166
Query: 268 DKVSNMTIWGNHSTTQVPDFLNARINGLPV--KEIIKDHKWLEEGFTETIQKR--GGLLI 323
+V I G+ T +P L +++ G+ +E+ K ++ TE ++ + GG
Sbjct: 167 GEVEVPVIGGHSGVTILP--LLSQVPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSAT 224
Query: 324 KKWGRSSAASTAVSIVDAMK 343
G+ +AA +S+V A++
Sbjct: 225 LSMGQ-AAARFGLSLVRALQ 243
>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|B Chain B, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|C Chain C, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|D Chain D, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|A Chain A, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|B Chain B, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|C Chain C, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|D Chain D, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|E Chain E, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|F Chain F, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|3VKV|A Chain A, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|B Chain B, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|C Chain C, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|D Chain D, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|E Chain E, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|F Chain F, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
Length = 326
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 3/167 (1%)
Query: 143 EGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFA 202
+G A++L ++L P KI Y +DA+ ++ P+ PG R L++ N +I
Sbjct: 48 KGDAIDLSNAL-PFTSPKKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILK 106
Query: 203 EQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALK 262
+ + N +V NP + K + + + T LD R + +A
Sbjct: 107 SIVDPI-VDSGFNGIFLVAANPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEM 165
Query: 263 AGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEE 309
V V + I G H T+ P + +A I G+ + E +K H ++E
Sbjct: 166 VNVDARSV-HAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIKE 211
>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FM3|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FN7|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Lactic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FN7|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Lactic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FNZ|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Cofactor
(B-Nicotinamide Adenine Dinucleotide) And Inhibitor
(Oxamic Acid)
pdb|2FNZ|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Cofactor
(B-Nicotinamide Adenine Dinucleotide) And Inhibitor
(Oxamic Acid)
pdb|2FRM|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|C Chain C, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|D Chain D, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
Length = 321
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 73/186 (39%), Gaps = 27/186 (14%)
Query: 143 EGVAMELEDSLFPLLREVK-IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIF 201
+G A+++ S+ K IG N Y ++ ++ + P P +R+ LL N +I
Sbjct: 42 QGKALDITHSMVMFGSTSKVIGTNDYADISGSDVVIITASIPGRPKDDRSELLFGNARI- 100
Query: 202 AEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRL----------- 250
L++VA V C +IC+ N + +F ++ L
Sbjct: 101 ------LDSVAEG------VKKYCPNAFVICITNPLDVMVSHFQKVSGLPHNKVCGMAGV 148
Query: 251 -DENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEE 309
D +R + +A GV VS + G H VP + + G+P+ IK +E
Sbjct: 149 LDSSRFRTFIAQHFGVNASDVS-ANVIGGHGDGMVPATSSVSVGGVPLSSFIKQGLITQE 207
Query: 310 GFTETI 315
E +
Sbjct: 208 QIDEIV 213
>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|B Chain B, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|C Chain C, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|D Chain D, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5Q|A Chain A, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|B Chain B, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|C Chain C, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|D Chain D, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5R|A Chain A, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|B Chain B, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|C Chain C, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|D Chain D, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
Length = 304
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 97/244 (39%), Gaps = 26/244 (10%)
Query: 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226
YE ++ ++ PR PG R L N I + +L+ + + NP +
Sbjct: 66 YEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYIS-LTTSNPVD 124
Query: 227 TNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM--TIWGNHSTTQV 284
+ + RLD R + L+ + F V N+ TI G H QV
Sbjct: 125 LLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEE---FDAPVQNVEGTILGEHGDAQV 181
Query: 285 PDFLNARINGLPVKEIIKDHKW-----LEEGFTETIQKRGGLLIKKWGRSSAASTAVSIV 339
P F R++G E D K L+E + I+++G +WG A +
Sbjct: 182 PVFSKVRVDGTD-PEFSGDEKEQLLGDLQESAMDVIERKGA---TEWG------PARGVA 231
Query: 340 DAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLR 399
+++++ T G+ + V G +G ED F +P R +G E+V+ DDY +
Sbjct: 232 HMVEAILHDT--GEVLPASVKLEGE-FG-HEDTAFGVPVRLGSNGVEEIVE-WDLDDYEQ 286
Query: 400 KRIA 403
+A
Sbjct: 287 DLMA 290
>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1HLP|B Chain B, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1D3A|A Chain A, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
pdb|1D3A|B Chain B, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
Length = 303
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 97/244 (39%), Gaps = 26/244 (10%)
Query: 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226
YE ++ ++ PR PG R L N I + +L+ + + NP +
Sbjct: 65 YEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYIS-LTTSNPVD 123
Query: 227 TNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM--TIWGNHSTTQV 284
+ + RLD R + L+ + F V N+ TI G H QV
Sbjct: 124 LLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEE---FDAPVQNVEGTILGEHGDAQV 180
Query: 285 PDFLNARINGLPVKEIIKDHKW-----LEEGFTETIQKRGGLLIKKWGRSSAASTAVSIV 339
P F R++G E D K L+E + I+++G +WG A +
Sbjct: 181 PVFSKVRVDGTD-PEFSGDEKEQLLGDLQESAMDVIERKGA---TEWG------PARGVA 230
Query: 340 DAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLR 399
+++++ T G+ + V G +G ED F +P R +G E+V+ DDY +
Sbjct: 231 HMVEAILHDT--GEVLPASVKLEGE-FG-HEDTAFGVPVRLGSNGVEEIVE-WDLDDYEQ 285
Query: 400 KRIA 403
+A
Sbjct: 286 DLMA 289
>pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor Analog (3-Acetylpyridine Adenine
Dinucleotide).
pdb|2EWD|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor Analog (3-Acetylpyridine Adenine
Dinucleotide)
Length = 317
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 73/186 (39%), Gaps = 27/186 (14%)
Query: 143 EGVAMELEDSLFPLLREVK-IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIF 201
+G A+++ S+ K IG + Y ++ ++ + P P +R+ LL N +I
Sbjct: 42 QGKALDITHSMVMFGSTSKVIGTDDYADISGSDVVIITASIPGRPKDDRSELLFGNARI- 100
Query: 202 AEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRL----------- 250
L++VA V C +IC+ N + +F ++ L
Sbjct: 101 ------LDSVAEG------VKKYCPNAFVICITNPLDVMVSHFQKVSGLPHNKVCGMAGV 148
Query: 251 -DENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEE 309
D +R + +A GV VS + G H VP + + G+P+ IK +E
Sbjct: 149 LDSSRFRTFIAQHFGVNASDVS-ANVIGGHGDGMVPATSSVSVGGVPLSSFIKQGLITQE 207
Query: 310 GFTETI 315
E +
Sbjct: 208 QIDEIV 213
>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
pdb|2HLP|B Chain B, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
Length = 303
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 93/244 (38%), Gaps = 26/244 (10%)
Query: 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226
YE ++ ++ PR PG R L N I + +L+ + + NP +
Sbjct: 65 YEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYIS-LTTSNPVD 123
Query: 227 TNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM--TIWGNHSTTQV 284
+ + RLD R + L+ + F V N+ TI G H QV
Sbjct: 124 LLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEE---FDAPVQNVEGTILGEHGDAQV 180
Query: 285 PDFLNARINGLPVKEIIKDHKW-----LEEGFTETIQKRGGLLIKKWGRSSAASTAVSIV 339
P F R++G E D K L+E + I+++G +WG + + V +
Sbjct: 181 PVFSKVRVDGTD-PEFSGDEKEQLLGDLQESAMDVIERKGA---TEWGPARGVAHMVEAI 236
Query: 340 DAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLR 399
V P + V G +G ED F +P R +G E+V+ DDY +
Sbjct: 237 LHDTGRVLP--------ASVKLEGE-FG-HEDTAFGVPVRLGSNGVEEIVE-WDLDDYEQ 285
Query: 400 KRIA 403
+A
Sbjct: 286 DLMA 289
>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
Length = 312
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 110/260 (42%), Gaps = 30/260 (11%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE----GVAMELEDS 152
+ +AV GAAG I L +L P GSE SL + GVA++L S
Sbjct: 1 MKVAVLGAAGGIGQALAL------LLKTQLPS-----GSELSLYDIAPVTPGVAVDL--S 47
Query: 153 LFPLLREVK--IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNA 210
P ++K G + E A+ L+ R PGM+R+ L ++N I + +
Sbjct: 48 HIPTAVKIKGFSGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAK 107
Query: 211 VASRNVKVIVVGNPCNTNALIC---LKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFY 267
+ + ++ NP NT I LK A +T LD + +A G
Sbjct: 108 TCPKAC-IGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIICSNTFVAELKGKQP 166
Query: 268 DKVSNMTIWGNHSTTQVPDFLNARINGLPV--KEIIKDHKWLEEGFTETIQKR--GGLLI 323
+V I G+ T +P L +++ G+ +E+ K ++ TE ++ + GG
Sbjct: 167 GEVEVPVIGGHSGVTILP--LLSQVPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSAT 224
Query: 324 KKWGRSSAASTAVSIVDAMK 343
G+ +AA +S+V A++
Sbjct: 225 LSMGQ-AAARFGLSLVRALQ 243
>pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|B Chain B, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|C Chain C, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|D Chain D, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
Length = 318
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 70/163 (42%), Gaps = 5/163 (3%)
Query: 143 EGVAMELEDS-LFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIF 201
+G A++LED+ F +++ G Y +DA+ ++ P+ PG R L++ N I
Sbjct: 44 KGDALDLEDAQAFTAPKKIYSG--EYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNIL 101
Query: 202 AEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLAL 261
+ K + + +V NP + K + + + T LD +R + L
Sbjct: 102 SSIVKPVVDSGFDGI-FLVAANPVDILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGK 160
Query: 262 KAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH 304
+ V V + I G H ++ + A I PV+++ K+
Sbjct: 161 QFNVDPRSV-DAYIMGEHGDSEFAAYSTATIGTRPVRDVAKEQ 202
>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|B Chain B, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|C Chain C, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|D Chain D, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|E Chain E, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|F Chain F, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|G Chain G, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|H Chain H, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|4I8X|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I9H|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9N|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9U|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
Length = 331
Score = 34.7 bits (78), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 107/266 (40%), Gaps = 35/266 (13%)
Query: 142 LEGVAMELED-SLFPLLREVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQ 199
L+G M+L+ SLF LR KI Y + +++ ++ + G R L+ N
Sbjct: 57 LKGEMMDLQHGSLF--LRTPKIVSGKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVN 114
Query: 200 IFAEQGKALNAVA-SRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
IF + N V S + K++VV NP + + K + + + LD R +
Sbjct: 115 IF--KFIIPNVVKYSPHCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYL 172
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD-------------HK 305
+ + GV + + I G H + VP + + G+ +K + + HK
Sbjct: 173 MGERLGV-HALSCHGWILGEHGDSSVPVWSGMNVAGVSLKTLHPELGTDADKEQWKQVHK 231
Query: 306 WLEEGFTETIQKRGGLLIKKWGRS-SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGN 364
+ + E I+ +G W S A A SI MK+L P
Sbjct: 232 QVVDSAYEVIKLKG---YTTWAIGLSVADLAESI---MKNLRRVHPISTMLK-------G 278
Query: 365 PYGIAEDIVFSMPCRSKGDGDYELVK 390
YGI ED+ S+PC +G ++VK
Sbjct: 279 LYGIKEDVFLSVPCVLGQNGISDVVK 304
>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Nadh
pdb|2X0J|A Chain A, 2.8 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Etheno-Nad
Length = 294
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Query: 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVV 221
+G Y L + +E ++ R PGM R L N I + K + A + K++VV
Sbjct: 59 VGGADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPES-KILVV 117
Query: 222 GNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQL 259
NP + I K + + F +LD R K +L
Sbjct: 118 TNPMDVMTYIMWKESGKPRNEVFGMGNQLDSQRLKERL 155
>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDT|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
Length = 332
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 131/329 (39%), Gaps = 49/329 (14%)
Query: 80 LTYDLKAEEETKSWKKMVNIAVSGAAGM-IANHLLFKLAAGEVLGPDQPIALKLLGSERS 138
L ++L EE K + + GA GM A +L K A E IAL + ++
Sbjct: 8 LIHNLLKEEHVPHNK--ITVVGVGAVGMACAISILMKELADE-------IALVDVMEDK- 57
Query: 139 LQALEGVAMELED-SLFPLLREVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDI 196
L+G M+L+ SLF LR KI Y + ++ ++ + G R L+
Sbjct: 58 ---LKGEMMDLQHGSLF--LRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQR 112
Query: 197 NGQIFAEQGKALNAVA-SRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRA 255
N IF + N V S N K++VV NP + + K + + + LD R
Sbjct: 113 NVNIF--KFIIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARF 170
Query: 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD------------ 303
+ + + GV + + I G H + VP + + G+ +K + +
Sbjct: 171 RYLMGERLGV-HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKA 229
Query: 304 -HKWLEEGFTETIQKRGGLLIKKWGRS-SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYT 361
HK + + E I+ +G W S A A SI MK+L P
Sbjct: 230 VHKEVVDSAYEVIKLKG---YTSWAIGLSVADLAESI---MKNLRRVHPISTMIKG---- 279
Query: 362 NGNPYGIAEDIVFSMPCRSKGDGDYELVK 390
YGI E++ S+PC +G ++VK
Sbjct: 280 ---LYGIKENVFLSVPCILGQNGISDVVK 305
>pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus
pdb|3D0O|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus
pdb|3D4P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus Complexed With Nad And Pyruvate
pdb|3D4P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus Complexed With Nad And Pyruvate
Length = 317
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 84/195 (43%), Gaps = 8/195 (4%)
Query: 125 DQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPR 184
+Q I +L+ + + + G M+L+ + V++ Y DA+ ++ +
Sbjct: 27 NQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGAAQ 86
Query: 185 GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-NPCNTNALICLKNAPSIPAKN 243
PG R L+ N +IF + +AS+ + +V NP + A K + +
Sbjct: 87 KPGETRLDLVSKNLKIF--KSIVGEVMASKFDGIFLVATNPVDILAYATWKFSGLPKERV 144
Query: 244 FHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD 303
+ T LD R + L+ V V + I G H T++P + +A I G P+K +++
Sbjct: 145 IGSGTILDSARFRLLLSEAFDVAPRSV-DAQIIGEHGDTELPVWSHANIAGQPLKTLLEQ 203
Query: 304 H----KWLEEGFTET 314
+E+ F +T
Sbjct: 204 RPEGKAQIEQIFVQT 218
>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|B Chain B, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|C Chain C, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|D Chain D, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ2|A Chain A, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|B Chain B, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|C Chain C, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|D Chain D, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJE|A Chain A, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|B Chain B, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|C Chain C, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|D Chain D, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJH|A Chain A, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|B Chain B, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|C Chain C, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|D Chain D, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJI|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJJ|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJK|A Chain A, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|B Chain B, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|C Chain C, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|D Chain D, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJL|A Chain A, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|B Chain B, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|C Chain C, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|D Chain D, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJN|A Chain A, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|B Chain B, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|C Chain C, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|D Chain D, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJO|A Chain A, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|B Chain B, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|C Chain C, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|D Chain D, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AL4|A Chain A, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|B Chain B, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|C Chain C, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|D Chain D, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
Length = 331
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 111/289 (38%), Gaps = 36/289 (12%)
Query: 128 IALKLLGSERSL-----QALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAK 182
I +K L E +L L+G M+L+ L + Y + +++ ++
Sbjct: 38 ILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYSVTANSKLVIITAGA 97
Query: 183 PRGPGMERAGLLDINGQIFAEQGKALNAVA-SRNVKVIVVGNPCNTNALICLKNAPSIPA 241
+ G R L+ N IF + N V S K+++V NP + + K +
Sbjct: 98 RQQEGESRLNLVQRNVNIF--KFIIPNVVKYSPQCKLLIVSNPVDILTYVAWKISGFPKN 155
Query: 242 KNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVK--- 298
+ + LD R + + + GV + + + G H + VP + + G+ +K
Sbjct: 156 RVIGSGCNLDSARFRYLMGERLGV-HPLSCHGWVLGEHGDSSVPVWSGVNVAGVSLKSLN 214
Query: 299 ---------EIIKD-HKWLEEGFTETIQKRGGLLIKKWGRS-SAASTAVSIVDAMKSLVT 347
E KD HK + + E I+ +G W S A A SI MK+L
Sbjct: 215 PQLGTDADKEQWKDVHKQVVDSAYEVIKLKG---YTSWAIGLSVADLAESI---MKNLRR 268
Query: 348 PTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDD 396
P YGI ED+ S+PC +G ++VK + D
Sbjct: 269 VHPISTMIK-------GLYGIKEDVFLSVPCILGQNGISDVVKVTLTPD 310
>pdb|4AJ4|A Chain A, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|B Chain B, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|C Chain C, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|D Chain D, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
Length = 332
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 111/289 (38%), Gaps = 36/289 (12%)
Query: 128 IALKLLGSERSL-----QALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAK 182
I +K L E +L L+G M+L+ L + Y + +++ ++
Sbjct: 39 ILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYSVTANSKLVIITAGA 98
Query: 183 PRGPGMERAGLLDINGQIFAEQGKALNAVA-SRNVKVIVVGNPCNTNALICLKNAPSIPA 241
+ G R L+ N IF + N V S K+++V NP + + K +
Sbjct: 99 RQQEGESRLNLVQRNVNIF--KFIIPNVVKYSPQCKLLIVSNPVDILTYVAWKISGFPKN 156
Query: 242 KNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVK--- 298
+ + LD R + + + GV + + + G H + VP + + G+ +K
Sbjct: 157 RVIGSGCNLDSARFRYLMGERLGV-HPLSCHGWVLGEHGDSSVPVWSGVNVAGVSLKSLN 215
Query: 299 ---------EIIKD-HKWLEEGFTETIQKRGGLLIKKWGRS-SAASTAVSIVDAMKSLVT 347
E KD HK + + E I+ +G W S A A SI MK+L
Sbjct: 216 PQLGTDADKEQWKDVHKQVVDSAYEVIKLKG---YTSWAIGLSVADLAESI---MKNLRR 269
Query: 348 PTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDD 396
P YGI ED+ S+PC +G ++VK + D
Sbjct: 270 VHPISTMIK-------GLYGIKEDVFLSVPCILGQNGISDVVKVTLTPD 311
>pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r)
Fro Staphylococcus Aureus Complexed With Nad And
Pyruvate
pdb|3H3J|B Chain B, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r)
Fro Staphylococcus Aureus Complexed With Nad And
Pyruvate
Length = 317
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 84/195 (43%), Gaps = 8/195 (4%)
Query: 125 DQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPR 184
+Q I +L+ + + + G M+L+ + V++ Y DA+ ++ +
Sbjct: 27 NQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGARQ 86
Query: 185 GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-NPCNTNALICLKNAPSIPAKN 243
PG R L+ N +IF + +AS+ + +V NP + A K + +
Sbjct: 87 KPGETRLDLVSKNLKIF--KSIVGEVMASKFDGIFLVATNPVDILAYATWKFSGLPKERV 144
Query: 244 FHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD 303
+ T LD R + L+ V V + I G H T++P + +A I G P+K +++
Sbjct: 145 IGSGTILDSARFRLLLSEAFDVAPRSV-DAQIIGEHGDTELPVWSHANIAGQPLKTLLEQ 203
Query: 304 H----KWLEEGFTET 314
+E+ F +T
Sbjct: 204 RPEGKAQIEQIFVQT 218
>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|B Chain B, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|C Chain C, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|D Chain D, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
Length = 331
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 106/286 (37%), Gaps = 42/286 (14%)
Query: 128 IALKLLGSERSL-----QALEGVAMELED-SLFPLLREVKIGINPYELFEDAEWALLIGA 181
I LK L E +L L G A++L+ SLF ++ G Y + +++ ++
Sbjct: 38 ILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFG-KDYNVSANSKLVIITAG 96
Query: 182 KPRGPGMERAGLLDINGQIFAEQGKALNAVASRN---VKVIVVGNPCNTNALICLKNAPS 238
G R LL N I KA+ +N K+IVV NP + + K +
Sbjct: 97 ARMVSGQTRLDLLQRNVAIM----KAIVPGVIQNSPDCKIIVVTNPVDILTYVVWKISGF 152
Query: 239 IPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVK 298
+ + LD R + + K GV + G H + VP + + G+ +K
Sbjct: 153 PVGRVIGSGCNLDSARFRYLIGEKLGVNPTSCHGWVL-GEHGDSSVPIWSGVNVAGVTLK 211
Query: 299 EI-------------IKDHKWLEEGFTETIQKRGGLLIKKWGRS-SAASTAVSIVDAMKS 344
+ HK + EG E + +G W S A SI+ +K
Sbjct: 212 SLNPAIGTDKNKQHWKNVHKQVVEGGYEVLDMKG---YTSWAIGLSVTDLARSILKNLKR 268
Query: 345 LVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVK 390
+ T F +GI E++ S+PC G + VK
Sbjct: 269 VHPVTTLVKGF----------HGIKEEVFLSIPCVLGESGITDFVK 304
>pdb|2KA5|A Chain A, Nmr Structure Of The Protein Tm1081
Length = 125
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 365 PYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKV 405
PY I +D+V MP + + L K +FD++L K K+
Sbjct: 15 PYKIVDDVVILMPNKELNIENAHLFKKWVFDEFLNKGYNKI 55
>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
pdb|2X0R|B Chain B, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
Length = 304
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 95/244 (38%), Gaps = 26/244 (10%)
Query: 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226
YE ++ ++ PR PG R L N I + +L+ + + NP +
Sbjct: 66 YEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYIS-LTTSNPVD 124
Query: 227 TNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM--TIWGNHSTTQV 284
+ + RLD R + L+ + F V N+ TI G H QV
Sbjct: 125 LLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEE---FDAPVQNVEGTILGEHGDAQV 181
Query: 285 PDFLNARINGLPVKEIIKDHKW-----LEEGFTETIQKRGGLLIKKWGRSSAASTAVSIV 339
P F ++G E D K L+E + I+++G +WG A +
Sbjct: 182 PVFSKVSVDGTD-PEFSGDEKEQLLGDLQESAMDVIERKGA---TEWG------PARGVA 231
Query: 340 DAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLR 399
+++++ T G+ + V G +G ED F +P +G E+V+ DDY +
Sbjct: 232 HMVEAILHDT--GEVLPASVKLEGE-FG-HEDTAFGVPVSLGSNGVEEIVE-WDLDDYEQ 286
Query: 400 KRIA 403
+A
Sbjct: 287 DLMA 290
>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|B Chain B, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|C Chain C, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|D Chain D, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
Length = 303
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 95/244 (38%), Gaps = 26/244 (10%)
Query: 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226
YE ++ ++ PR PG R L N I + +L+ + + NP +
Sbjct: 65 YEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYIS-LTTSNPVD 123
Query: 227 TNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM--TIWGNHSTTQV 284
+ + RLD R + L+ + F V N+ TI G H QV
Sbjct: 124 LLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEE---FDAPVQNVEGTILGEHGDAQV 180
Query: 285 PDFLNARINGLPVKEIIKDHKW-----LEEGFTETIQKRGGLLIKKWGRSSAASTAVSIV 339
P F ++G E D K L+E + I+++G +WG A +
Sbjct: 181 PVFSKVSVDGTD-PEFSGDEKEQLLGDLQESAMDVIERKGA---TEWG------PARGVA 230
Query: 340 DAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLR 399
+++++ T G+ + V G +G ED F +P +G E+V+ DDY +
Sbjct: 231 HMVEAILHDT--GEVLPASVKLEGE-FG-HEDTAFGVPVSLGSNGVEEIVE-WDLDDYEQ 285
Query: 400 KRIA 403
+A
Sbjct: 286 DLMA 289
>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|B Chain B, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|C Chain C, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|D Chain D, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|E Chain E, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|F Chain F, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|G Chain G, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|H Chain H, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
Length = 316
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 2/159 (1%)
Query: 144 GVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAE 203
G AM+ + V I Y+ DA+ ++ + PG R L+D N IF
Sbjct: 46 GDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRS 105
Query: 204 QGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKA 263
+++ A + + +V NP + K + + + T LD R + L
Sbjct: 106 IVESVMASGFQGL-FLVATNPVDILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYF 164
Query: 264 GVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIK 302
V V I G H T++P + A I +P++++++
Sbjct: 165 SVAPQNVHAYII-GEHGDTELPVWSQAYIGVMPIRKLVE 202
>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|B Chain B, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|C Chain C, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|D Chain D, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|A Chain A, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|B Chain B, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|C Chain C, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|D Chain D, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
Length = 317
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 2/159 (1%)
Query: 144 GVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAE 203
G AM+ + V I Y+ DA+ ++ + PG R L+D N IF
Sbjct: 46 GDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRS 105
Query: 204 QGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKA 263
+++ A + + +V NP + K + + + T LD R + L
Sbjct: 106 IVESVMASGFQGL-FLVATNPVDILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYF 164
Query: 264 GVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIK 302
V V I G H T++P + A I +P++++++
Sbjct: 165 SVAPQNVHAYII-GEHGDTELPVWSQAYIGVMPIRKLVE 202
>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Thermotoga Maritima
Length = 385
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 265 VFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIK 324
V ++ +N+ G+H TT + L R +KE+ K EGF E ++++G L+K
Sbjct: 251 VIVNERANVLEPGDHGTTFGGNPLACRAGVTVIKELTK------EGFLEEVEEKGNYLMK 304
Query: 325 KWGRSSAASTAVSIVDAMKSLV 346
K V+ V M ++
Sbjct: 305 KLQEMKEEYDVVADVRGMGLMI 326
>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
pdb|5LDH|B Chain B, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
Length = 334
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 107/270 (39%), Gaps = 31/270 (11%)
Query: 142 LEGVAMELED-SLFPLLREVKIGINP-YELFEDAEWALLIGAKPRGPGMERAGLLDINGQ 199
L+G M+L+ SLF L+ KI N Y + +++ ++ + G R L+ N
Sbjct: 59 LKGEMMDLQHGSLF--LQTPKIVANKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVN 116
Query: 200 IFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQL 259
+F + S N +IVV NP + + K + + + LD R + +
Sbjct: 117 VFKFIIPQI-VKYSPNCIIIVVSNPVDILTYVAWKLSGLPKHRVIGSGCNLDSARFRYLM 175
Query: 260 ALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD-------------HKW 306
K GV + + I G H + V + + G+ ++++ + HK
Sbjct: 176 GEKLGV-HPSSCHGWILGEHGDSSVAVWSGVNVAGVVLQQLNPEMGTDNDSENWKEVHKM 234
Query: 307 LEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPY 366
+ E E I+ +G W + +S+ D ++S++ S+ V Y
Sbjct: 235 VVESAYEVIKLKG---YTNW------AIGLSVADLIESMLKNLSRIHPVSTMVQ---GMY 282
Query: 367 GIAEDIVFSMPCRSKGDGDYELVKDVIFDD 396
GI ++ S+PC G ++ + DD
Sbjct: 283 GIENEVFLSLPCVLNARGLTSVINQKLKDD 312
>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|B Chain B, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|C Chain C, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|D Chain D, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
Length = 333
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 75/192 (39%), Gaps = 26/192 (13%)
Query: 218 VIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG 277
+IVV NP + + K + + + LD R + +A K G+ + + I G
Sbjct: 133 IIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGI-HPSSCHGWILG 191
Query: 278 NHSTTQVPDFLNARINGLPVKEIIKD-------------HKWLEEGFTETIQKRGGLLIK 324
H + V + + G+ ++E+ + HK + E E I+ +G
Sbjct: 192 EHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEVIKLKG---YT 248
Query: 325 KWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDG 384
W + +S+ D ++S++ S+ V YGI ++ S+PC G
Sbjct: 249 NW------AIGLSVADLIESMLKNLSRIHPVSTMV---KGMYGIENEVFLSLPCILNARG 299
Query: 385 DYELVKDVIFDD 396
++ + DD
Sbjct: 300 LTSVINQKLKDD 311
>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I0Z|B Chain B, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
Length = 333
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 75/192 (39%), Gaps = 26/192 (13%)
Query: 218 VIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG 277
+IVV NP + + K + + + LD R + +A K G+ + + I G
Sbjct: 133 IIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGI-HPSSCHGWILG 191
Query: 278 NHSTTQVPDFLNARINGLPVKEIIKD-------------HKWLEEGFTETIQKRGGLLIK 324
H + V + + G+ ++E+ + HK + E E I+ +G
Sbjct: 192 EHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEVIKLKG---YT 248
Query: 325 KWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDG 384
W + +S+ D ++S++ S+ V YGI ++ S+PC G
Sbjct: 249 NW------AIGLSVADLIESMLKNLSRIHPVSTMV---KGMYGIENEVFLSLPCILNARG 299
Query: 385 DYELVKDVIFDD 396
++ + DD
Sbjct: 300 LTSVINQKLKDD 311
>pdb|3SYJ|A Chain A, Crystal Structure Of The Haemophilus Influenzae Hap
Adhesin
Length = 1011
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 281 TTQVPDFLNAR---INGLPVKEIIKDHKWLEEGF-TETIQKRGG 320
T + LN R + G+P EI+ DH W+ F E Q +GG
Sbjct: 594 TPHAYNHLNKRWSEMEGIPQGEIVWDHDWINRTFKAENFQIKGG 637
>pdb|3F43|A Chain A, Crystal Structure Of A Putative Anti-sigma Factor
Antagonist (tm1081) From Thermotoga Maritima At 1.59 A
Resolution
Length = 125
Score = 28.1 bits (61), Expect = 8.1, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 365 PYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKV 405
PY I +D+V P + + L K +FD++L K K+
Sbjct: 15 PYKIVDDVVILXPNKELNIENAHLFKKWVFDEFLNKGYNKI 55
>pdb|1FNN|A Chain A, Crystal Structure Of Cdc6p From Pyrobaculum Aerophilum
pdb|1FNN|B Chain B, Crystal Structure Of Cdc6p From Pyrobaculum Aerophilum
Length = 389
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
Query: 145 VAMELEDSLFPL--LREVKIGINPYELFEDAEWALLI-----GAKPRGPGMERAGLLDIN 197
+ + L + LF L +R +KI PY F DAE + I G +PR + L D+
Sbjct: 284 IGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPRVHSQLWSYLNDLR 343
Query: 198 --GQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLK 234
G + Q K V R + + P +T + K
Sbjct: 344 EKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITK 382
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,743,609
Number of Sequences: 62578
Number of extensions: 490141
Number of successful extensions: 1335
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 1258
Number of HSP's gapped (non-prelim): 77
length of query: 405
length of database: 14,973,337
effective HSP length: 101
effective length of query: 304
effective length of database: 8,652,959
effective search space: 2630499536
effective search space used: 2630499536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)